Query 005802
Match_columns 676
No_of_seqs 594 out of 3532
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 07:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-39 4.5E-44 349.8 38.2 501 66-626 63-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4E-37 1.4E-41 330.5 38.4 449 123-627 82-548 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.3E-25 1.5E-29 223.0 39.6 368 233-610 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 9.4E-25 3.2E-29 220.4 36.7 350 266-625 6-369 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.5E-26 5E-31 236.7 22.7 214 241-540 7-221 (501)
6 4g26_A Pentatricopeptide repea 99.9 4.6E-26 1.6E-30 233.0 20.2 184 225-440 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.9E-22 1E-26 210.6 31.8 427 193-626 7-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.8E-22 1.3E-26 209.7 30.0 241 356-601 237-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.4E-21 8E-26 204.9 29.6 422 193-626 26-493 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.2E-20 4.1E-25 194.6 32.5 335 223-620 25-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 7.1E-20 2.4E-24 188.8 32.4 377 189-613 23-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.1E-20 1.1E-24 196.3 27.6 428 125-599 25-500 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 1.5E-16 5.1E-21 172.1 49.0 564 5-619 659-1340(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 6.1E-16 2.1E-20 167.4 52.3 200 161-382 1106-1306(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 6.2E-18 2.1E-22 168.4 33.7 301 294-624 3-335 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 2.5E-17 8.5E-22 164.0 32.1 321 225-608 4-353 (359)
17 3hym_B Cell division cycle pro 99.8 5.2E-17 1.8E-21 159.6 28.1 275 333-611 30-321 (330)
18 3hym_B Cell division cycle pro 99.8 5.8E-17 2E-21 159.2 27.9 266 354-626 20-301 (330)
19 1fch_A Peroxisomal targeting s 99.8 2.5E-17 8.5E-22 164.7 23.1 278 339-622 39-357 (368)
20 2xm6_A Protein corresponding t 99.8 1.2E-15 4E-20 158.5 35.6 356 205-607 56-452 (490)
21 1b89_A Protein (clathrin heavy 99.8 4.9E-17 1.7E-21 157.9 21.5 183 204-412 15-197 (449)
22 1b89_A Protein (clathrin heavy 99.8 3.3E-16 1.1E-20 152.1 27.0 346 172-556 15-370 (449)
23 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4.1E-21 152.6 23.1 270 332-616 6-286 (291)
24 2ooe_A Cleavage stimulation fa 99.7 9.8E-15 3.3E-19 153.2 38.9 409 191-626 12-494 (530)
25 2xm6_A Protein corresponding t 99.7 1.4E-14 4.7E-19 150.5 38.0 355 223-626 38-434 (490)
26 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.9E-20 145.8 27.5 249 363-627 6-267 (291)
27 1fch_A Peroxisomal targeting s 99.7 1.2E-16 4.1E-21 159.7 21.2 277 340-626 16-316 (368)
28 4eqf_A PEX5-related protein; a 99.7 1.2E-16 4.2E-21 159.4 19.9 231 393-626 66-312 (365)
29 4eqf_A PEX5-related protein; a 99.7 2.1E-16 7.1E-21 157.7 20.9 259 356-620 65-352 (365)
30 2ooe_A Cleavage stimulation fa 99.7 1.8E-14 6.3E-19 151.1 34.6 214 373-593 255-495 (530)
31 3cv0_A Peroxisome targeting si 99.7 4E-16 1.4E-20 153.0 20.5 258 358-622 23-313 (327)
32 4g1t_A Interferon-induced prot 99.7 4E-15 1.4E-19 154.1 27.8 370 223-635 50-470 (472)
33 2pl2_A Hypothetical conserved 99.6 3E-15 1E-19 136.5 16.3 193 424-622 2-212 (217)
34 3spa_A Mtrpol, DNA-directed RN 99.6 2E-16 6.8E-21 165.9 8.8 147 57-206 128-286 (1134)
35 3uq3_A Heat shock protein STI1 99.6 1.5E-14 5E-19 136.3 20.9 212 400-625 13-237 (258)
36 4g1t_A Interferon-induced prot 99.6 9.4E-14 3.2E-18 143.8 28.6 383 189-602 48-471 (472)
37 3cv0_A Peroxisome targeting si 99.6 3.1E-14 1.1E-18 139.5 21.8 231 391-626 20-271 (327)
38 3spa_A Mtrpol, DNA-directed RN 99.6 3.9E-16 1.3E-20 163.8 8.3 126 425-551 125-258 (1134)
39 3uq3_A Heat shock protein STI1 99.6 6.3E-14 2.2E-18 131.9 18.9 234 358-603 7-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.3E-13 4.3E-18 131.3 20.5 241 369-618 18-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.6 4.1E-13 1.4E-17 137.0 23.9 375 168-624 11-421 (452)
42 2ho1_A Type 4 fimbrial biogene 99.6 2.9E-13 1E-17 126.9 20.9 198 427-626 37-240 (252)
43 2vq2_A PILW, putative fimbrial 99.6 4.7E-13 1.6E-17 122.9 21.2 199 426-626 7-213 (225)
44 3u4t_A TPR repeat-containing p 99.5 7.1E-13 2.4E-17 125.9 22.3 222 401-627 12-253 (272)
45 3u4t_A TPR repeat-containing p 99.5 2.4E-13 8.3E-18 129.1 18.5 175 430-609 77-269 (272)
46 1ouv_A Conserved hypothetical 99.5 2.6E-12 8.8E-17 122.0 25.3 191 428-627 39-254 (273)
47 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-13 5.3E-18 127.9 15.7 200 425-627 21-225 (243)
48 3e4b_A ALGK; tetratricopeptide 99.5 1.9E-12 6.6E-17 132.0 23.5 272 340-627 89-390 (452)
49 3vtx_A MAMA; tetratricopeptide 99.5 5.3E-13 1.8E-17 118.2 16.8 166 457-627 4-173 (184)
50 2q7f_A YRRB protein; TPR, prot 99.5 3.6E-13 1.2E-17 125.5 15.9 181 426-609 56-241 (243)
51 2h6f_A Protein farnesyltransfe 99.5 8.1E-13 2.8E-17 130.3 18.6 216 404-626 109-350 (382)
52 2ho1_A Type 4 fimbrial biogene 99.5 3E-12 1E-16 120.0 21.8 171 426-599 70-247 (252)
53 2vq2_A PILW, putative fimbrial 99.5 4.7E-12 1.6E-16 116.2 21.3 200 398-601 14-222 (225)
54 2pl2_A Hypothetical conserved 99.5 2E-12 6.9E-17 117.6 18.0 205 355-587 4-211 (217)
55 2h6f_A Protein farnesyltransfe 99.5 2.7E-12 9.4E-17 126.5 19.7 244 357-608 98-366 (382)
56 1ouv_A Conserved hypothetical 99.5 1.8E-11 6.2E-16 116.1 24.8 226 355-594 5-255 (273)
57 3sf4_A G-protein-signaling mod 99.5 9.3E-13 3.2E-17 133.3 16.1 268 327-594 11-340 (406)
58 4abn_A Tetratricopeptide repea 99.4 5E-13 1.7E-17 137.3 13.8 206 409-620 85-317 (474)
59 4a1s_A PINS, partner of inscut 99.4 8.2E-13 2.8E-17 134.0 15.2 263 362-624 54-372 (411)
60 3ro2_A PINS homolog, G-protein 99.4 1.8E-12 6E-17 127.3 16.9 263 363-625 12-333 (338)
61 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.6E-12 5.4E-17 123.7 15.8 218 404-626 17-246 (275)
62 3sf4_A G-protein-signaling mod 99.4 6E-12 2E-16 127.3 20.6 272 261-556 11-334 (406)
63 4e6h_A MRNA 3'-END-processing 99.4 1.4E-09 4.7E-14 114.6 36.5 436 106-596 50-576 (679)
64 3vtx_A MAMA; tetratricopeptide 99.4 9.9E-12 3.4E-16 109.9 15.7 166 426-595 4-175 (184)
65 4i17_A Hypothetical protein; T 99.4 1.2E-11 4E-16 113.9 16.2 188 426-625 6-210 (228)
66 4gyw_A UDP-N-acetylglucosamine 99.4 5.6E-12 1.9E-16 134.5 16.0 161 458-623 9-173 (723)
67 3ulq_A Response regulator aspa 99.3 1.7E-11 5.9E-16 122.7 16.8 223 401-624 112-368 (383)
68 3as5_A MAMA; tetratricopeptide 99.3 1.7E-11 5.7E-16 108.5 14.2 163 461-626 11-175 (186)
69 2ond_A Cleavage stimulation fa 99.3 8.6E-11 2.9E-15 113.5 20.1 218 373-596 33-276 (308)
70 3nf1_A KLC 1, kinesin light ch 99.3 3.1E-12 1.1E-16 124.1 9.4 240 357-624 28-307 (311)
71 3ro2_A PINS homolog, G-protein 99.3 7.1E-11 2.4E-15 115.7 19.0 134 460-593 185-335 (338)
72 4a1s_A PINS, partner of inscut 99.3 1.5E-11 5.1E-16 124.6 14.4 235 359-593 89-375 (411)
73 4e6h_A MRNA 3'-END-processing 99.3 7.3E-09 2.5E-13 109.1 34.5 215 411-627 328-573 (679)
74 4abn_A Tetratricopeptide repea 99.3 5.6E-11 1.9E-15 122.0 17.3 179 443-626 84-289 (474)
75 2ond_A Cleavage stimulation fa 99.3 5.7E-10 1.9E-14 107.7 22.6 214 409-628 33-274 (308)
76 4i17_A Hypothetical protein; T 99.2 2.7E-10 9.4E-15 104.6 17.7 205 390-606 5-225 (228)
77 3ulq_A Response regulator aspa 99.2 1.2E-09 4.2E-14 109.1 23.6 227 335-591 113-369 (383)
78 3as5_A MAMA; tetratricopeptide 99.2 4E-10 1.4E-14 99.5 17.7 168 428-598 9-181 (186)
79 1hz4_A MALT regulatory protein 99.2 4.8E-09 1.6E-13 104.5 27.1 258 365-623 23-321 (373)
80 3qky_A Outer membrane assembly 99.2 3.5E-10 1.2E-14 106.3 17.1 203 427-670 15-247 (261)
81 3nf1_A KLC 1, kinesin light ch 99.2 3.5E-11 1.2E-15 116.6 10.1 241 325-593 27-310 (311)
82 3q15_A PSP28, response regulat 99.2 4E-09 1.4E-13 105.1 24.3 163 460-623 184-364 (378)
83 3mv2_B Coatomer subunit epsilo 99.2 2.8E-09 9.7E-14 99.2 20.8 197 446-670 85-305 (310)
84 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.4E-09 8.2E-14 97.8 17.8 182 427-628 4-217 (225)
85 4gyw_A UDP-N-acetylglucosamine 99.1 4.7E-10 1.6E-14 119.7 13.9 163 425-592 7-176 (723)
86 3q15_A PSP28, response regulat 99.1 2.8E-08 9.5E-13 99.0 25.8 162 428-590 183-365 (378)
87 3edt_B KLC 2, kinesin light ch 99.1 1.3E-09 4.4E-14 103.7 14.7 222 403-624 12-281 (283)
88 4ga2_A E3 SUMO-protein ligase 99.1 1.1E-10 3.8E-15 98.8 5.7 138 468-610 7-149 (150)
89 2fo7_A Synthetic consensus TPR 99.1 1.9E-09 6.6E-14 89.3 13.0 128 496-625 4-133 (136)
90 1hz4_A MALT regulatory protein 99.1 1.6E-07 5.4E-12 93.4 29.2 230 232-485 22-280 (373)
91 4ga2_A E3 SUMO-protein ligase 99.0 3E-10 1E-14 96.1 7.3 124 499-625 3-130 (150)
92 3qou_A Protein YBBN; thioredox 99.0 5.1E-09 1.7E-13 99.6 16.2 175 443-622 102-282 (287)
93 1qqe_A Vesicular transport pro 99.0 9.6E-10 3.3E-14 105.0 11.2 201 407-622 32-267 (292)
94 3gyz_A Chaperone protein IPGC; 99.0 1.1E-09 3.8E-14 91.9 10.1 103 524-626 30-135 (151)
95 3qky_A Outer membrane assembly 99.0 5E-09 1.7E-13 98.3 15.6 203 389-613 12-250 (261)
96 2vgx_A Chaperone SYCD; alterna 99.0 1.3E-09 4.3E-14 91.9 9.7 109 515-626 9-120 (148)
97 2pzi_A Probable serine/threoni 99.0 3.9E-09 1.3E-13 113.4 15.7 167 438-610 402-583 (681)
98 2r5s_A Uncharacterized protein 99.0 3.8E-09 1.3E-13 92.2 12.5 159 460-623 8-172 (176)
99 3mv2_B Coatomer subunit epsilo 99.0 4.2E-08 1.4E-12 91.4 19.6 180 411-598 85-290 (310)
100 4gco_A Protein STI-1; structur 99.0 2.7E-09 9.1E-14 86.9 10.0 101 524-624 7-110 (126)
101 2fo7_A Synthetic consensus TPR 99.0 1.7E-08 5.9E-13 83.3 14.7 131 460-593 3-135 (136)
102 2xcb_A PCRH, regulatory protei 98.9 7E-09 2.4E-13 86.8 11.6 102 524-625 12-116 (142)
103 2vsy_A XCC0866; transferase, g 98.9 7.6E-09 2.6E-13 109.3 14.7 158 440-602 2-169 (568)
104 3rjv_A Putative SEL1 repeat pr 98.9 5.6E-08 1.9E-12 87.6 18.4 162 456-626 16-199 (212)
105 3urz_A Uncharacterized protein 98.9 1.4E-08 5E-13 91.2 13.6 154 434-593 11-189 (208)
106 1qqe_A Vesicular transport pro 98.9 1.5E-08 5.1E-13 96.7 14.0 174 442-626 32-230 (292)
107 3edt_B KLC 2, kinesin light ch 98.9 2.9E-08 9.8E-13 94.2 15.8 163 428-590 86-281 (283)
108 1hh8_A P67PHOX, NCF-2, neutrop 98.9 4.8E-08 1.6E-12 88.3 15.7 87 463-556 11-98 (213)
109 2pzi_A Probable serine/threoni 98.9 5.1E-09 1.7E-13 112.5 10.4 153 469-627 402-566 (681)
110 4gco_A Protein STI-1; structur 98.8 2E-08 6.7E-13 81.7 10.2 113 489-604 8-124 (126)
111 3urz_A Uncharacterized protein 98.8 3.6E-08 1.2E-12 88.7 12.9 161 461-627 7-189 (208)
112 3u3w_A Transcriptional activat 98.8 2.3E-07 8E-12 88.5 18.9 160 464-623 81-265 (293)
113 2ifu_A Gamma-SNAP; membrane fu 98.8 3.6E-08 1.2E-12 94.8 12.4 219 369-617 4-254 (307)
114 2e2e_A Formate-dependent nitri 98.8 4.3E-08 1.5E-12 85.6 11.9 121 503-626 20-146 (177)
115 2vsy_A XCC0866; transferase, g 98.8 5.6E-08 1.9E-12 102.6 14.8 146 406-556 3-155 (568)
116 2qfc_A PLCR protein; TPR, HTH, 98.8 1.5E-07 5E-12 89.9 16.4 164 460-623 77-265 (293)
117 3dra_A Protein farnesyltransfe 98.8 1.3E-06 4.4E-11 82.4 21.9 211 409-623 50-286 (306)
118 3upv_A Heat shock protein STI1 98.8 5.7E-08 2E-12 79.2 11.2 119 529-667 4-124 (126)
119 3qou_A Protein YBBN; thioredox 98.8 7.7E-08 2.6E-12 91.3 13.6 134 491-627 115-251 (287)
120 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.4E-07 1.2E-11 83.4 17.4 185 392-597 4-220 (225)
121 1a17_A Serine/threonine protei 98.7 1.1E-07 3.9E-12 81.8 12.5 127 494-623 14-145 (166)
122 2lni_A Stress-induced-phosphop 98.7 1.1E-07 3.6E-12 78.3 11.2 115 493-610 16-133 (133)
123 2r5s_A Uncharacterized protein 98.7 1.4E-07 4.9E-12 82.1 12.4 130 495-627 8-140 (176)
124 2vyi_A SGTA protein; chaperone 98.7 1.5E-07 5.1E-12 77.1 11.3 118 493-612 12-131 (131)
125 1hxi_A PEX5, peroxisome target 98.7 6E-08 2.1E-12 78.2 8.5 96 531-626 19-116 (121)
126 1na0_A Designed protein CTPR3; 98.7 2.2E-07 7.6E-12 75.2 12.0 115 493-609 9-125 (125)
127 2kck_A TPR repeat; tetratricop 98.7 9.3E-08 3.2E-12 75.8 9.4 99 529-627 6-109 (112)
128 1p5q_A FKBP52, FK506-binding p 98.7 9.6E-08 3.3E-12 92.9 10.9 95 529-623 196-293 (336)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.3E-07 1.8E-11 81.3 15.2 145 430-594 9-154 (213)
130 3rjv_A Putative SEL1 repeat pr 98.6 1.2E-06 4.1E-11 78.8 17.2 172 411-592 5-199 (212)
131 2c2l_A CHIP, carboxy terminus 98.6 4.5E-08 1.5E-12 92.6 8.0 191 426-624 3-199 (281)
132 3gyz_A Chaperone protein IPGC; 98.6 1E-07 3.5E-12 79.9 9.2 103 490-595 32-138 (151)
133 2uy1_A Cleavage stimulation fa 98.6 9.6E-05 3.3E-09 75.5 32.0 365 193-590 16-413 (493)
134 2ifu_A Gamma-SNAP; membrane fu 98.6 7E-07 2.4E-11 85.8 15.3 163 393-556 37-222 (307)
135 4gcn_A Protein STI-1; structur 98.6 1.6E-07 5.5E-12 76.5 8.9 96 529-624 8-112 (127)
136 3sz7_A HSC70 cochaperone (SGT) 98.6 1.6E-07 5.6E-12 80.6 9.4 107 493-602 11-120 (164)
137 2uy1_A Cleavage stimulation fa 98.6 2E-05 7E-10 80.5 26.2 216 241-486 196-412 (493)
138 3q49_B STIP1 homology and U bo 98.6 3.7E-07 1.3E-11 75.6 11.0 99 528-626 8-108 (137)
139 1elw_A TPR1-domain of HOP; HOP 98.6 4.1E-07 1.4E-11 72.8 11.0 96 529-624 4-101 (118)
140 3u3w_A Transcriptional activat 98.6 4.2E-06 1.4E-10 79.7 19.7 158 433-590 81-266 (293)
141 2vgx_A Chaperone SYCD; alterna 98.6 8.5E-08 2.9E-12 80.6 6.6 104 493-599 21-127 (148)
142 4f3v_A ESX-1 secretion system 98.6 9.8E-07 3.4E-11 81.1 14.0 184 439-627 18-240 (282)
143 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.8E-11 78.4 14.1 153 470-623 4-175 (203)
144 1na0_A Designed protein CTPR3; 98.5 7.1E-07 2.4E-11 72.2 10.5 98 529-626 9-108 (125)
145 2xcb_A PCRH, regulatory protei 98.5 4.2E-07 1.4E-11 75.8 9.2 108 494-604 19-129 (142)
146 3dra_A Protein farnesyltransfe 98.5 4.8E-05 1.6E-09 71.7 24.2 224 372-603 49-301 (306)
147 2lni_A Stress-induced-phosphop 98.5 4.7E-07 1.6E-11 74.4 9.4 98 528-625 15-114 (133)
148 2e2e_A Formate-dependent nitri 98.5 5.4E-07 1.8E-11 78.5 10.1 126 469-598 21-152 (177)
149 2fbn_A 70 kDa peptidylprolyl i 98.5 6.5E-07 2.2E-11 79.6 10.6 95 530-624 89-186 (198)
150 1elw_A TPR1-domain of HOP; HOP 98.5 1.3E-06 4.6E-11 69.7 11.6 110 493-605 4-116 (118)
151 3upv_A Heat shock protein STI1 98.5 6E-07 2.1E-11 73.0 9.6 110 494-606 5-123 (126)
152 2dba_A Smooth muscle cell asso 98.5 1.7E-06 5.7E-11 72.6 12.6 110 493-605 28-143 (148)
153 3rkv_A Putative peptidylprolyl 98.5 7.8E-07 2.7E-11 76.1 10.5 64 561-624 63-126 (162)
154 3sz7_A HSC70 cochaperone (SGT) 98.5 1E-06 3.4E-11 75.6 10.8 96 529-624 11-108 (164)
155 2xev_A YBGF; tetratricopeptide 98.5 8.9E-07 3E-11 72.3 10.0 90 535-624 8-105 (129)
156 2vyi_A SGTA protein; chaperone 98.4 8.5E-07 2.9E-11 72.4 9.7 99 528-626 11-111 (131)
157 2hr2_A Hypothetical protein; a 98.4 2.1E-07 7.3E-12 76.9 5.8 93 533-625 15-132 (159)
158 2fbn_A 70 kDa peptidylprolyl i 98.4 4.6E-07 1.6E-11 80.6 8.1 120 502-624 13-151 (198)
159 2dba_A Smooth muscle cell asso 98.4 1.4E-06 4.9E-11 73.0 10.6 98 528-625 27-129 (148)
160 4f3v_A ESX-1 secretion system 98.4 6.7E-07 2.3E-11 82.2 8.8 136 461-601 105-247 (282)
161 2qfc_A PLCR protein; TPR, HTH, 98.4 5.1E-06 1.8E-10 79.1 14.9 161 430-590 78-266 (293)
162 3gw4_A Uncharacterized protein 98.4 2.4E-06 8.2E-11 76.2 11.6 152 439-590 4-176 (203)
163 3q49_B STIP1 homology and U bo 98.4 1.4E-06 4.8E-11 72.0 9.3 100 491-593 7-109 (137)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.9E-06 9.8E-11 86.3 13.1 96 529-624 317-415 (457)
165 1a17_A Serine/threonine protei 98.3 2.5E-06 8.6E-11 73.1 10.3 98 529-626 13-112 (166)
166 1elr_A TPR2A-domain of HOP; HO 98.3 1.5E-06 5.3E-11 70.9 8.5 94 530-623 5-107 (131)
167 1wao_1 Serine/threonine protei 98.3 2.2E-06 7.4E-11 87.6 11.3 113 468-585 16-134 (477)
168 2if4_A ATFKBP42; FKBP-like, al 98.3 9.3E-07 3.2E-11 86.0 7.9 148 460-627 181-331 (338)
169 1wao_1 Serine/threonine protei 98.3 8.3E-07 2.8E-11 90.7 7.8 118 499-619 12-134 (477)
170 3k9i_A BH0479 protein; putativ 98.3 4.2E-07 1.4E-11 72.8 4.3 82 542-623 3-89 (117)
171 1hxi_A PEX5, peroxisome target 98.3 2.4E-06 8.3E-11 68.6 8.5 97 496-595 20-119 (121)
172 3q7a_A Farnesyltransferase alp 98.3 7E-05 2.4E-09 71.3 19.4 191 430-623 91-330 (349)
173 2c2l_A CHIP, carboxy terminus 98.3 4.6E-06 1.6E-10 78.7 11.3 113 492-607 3-118 (281)
174 4b4t_Q 26S proteasome regulato 98.3 1.6E-05 5.4E-10 80.6 15.9 163 461-623 58-244 (434)
175 1ihg_A Cyclophilin 40; ppiase 98.2 3.1E-06 1.1E-10 83.2 9.5 89 529-617 273-363 (370)
176 1p5q_A FKBP52, FK506-binding p 98.2 8E-06 2.7E-10 79.3 12.2 128 458-590 147-294 (336)
177 3k9i_A BH0479 protein; putativ 98.2 1.4E-06 4.7E-11 69.7 5.6 94 506-599 3-99 (117)
178 2kck_A TPR repeat; tetratricop 98.2 7.2E-06 2.5E-10 64.6 9.9 101 493-595 6-111 (112)
179 4gcn_A Protein STI-1; structur 98.2 3.4E-06 1.2E-10 68.4 7.9 96 495-593 10-115 (127)
180 2xev_A YBGF; tetratricopeptide 98.2 1.8E-05 6.2E-10 64.3 12.4 102 498-602 7-117 (129)
181 3rkv_A Putative peptidylprolyl 98.2 2.4E-06 8.2E-11 73.0 7.2 78 529-606 63-143 (162)
182 2l6j_A TPR repeat-containing p 98.2 5.6E-07 1.9E-11 71.2 2.9 94 527-620 2-103 (111)
183 1elr_A TPR2A-domain of HOP; HO 98.2 4.5E-06 1.5E-10 68.0 8.4 110 495-607 6-124 (131)
184 3ro3_A PINS homolog, G-protein 98.2 2.6E-06 8.8E-11 72.6 7.1 129 495-623 11-157 (164)
185 3dss_A Geranylgeranyl transfer 98.1 0.00024 8.1E-09 67.4 20.1 178 443-624 90-304 (331)
186 3q7a_A Farnesyltransferase alp 98.1 0.0013 4.4E-08 62.6 23.8 228 368-603 66-345 (349)
187 2hr2_A Hypothetical protein; a 98.1 7.3E-06 2.5E-10 67.7 6.8 74 531-604 59-145 (159)
188 3ma5_A Tetratricopeptide repea 98.0 1.5E-05 5.3E-10 61.3 8.1 67 558-624 4-70 (100)
189 1zu2_A Mitochondrial import re 98.0 2.8E-06 9.4E-11 70.0 3.9 87 541-627 14-123 (158)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.7E-05 9.1E-10 79.2 12.0 98 529-626 268-382 (457)
191 1na3_A Designed protein CTPR2; 98.0 1.8E-05 6.3E-10 59.5 8.1 81 529-609 9-91 (91)
192 1ihg_A Cyclophilin 40; ppiase 98.0 2.6E-05 8.9E-10 76.5 11.2 66 560-625 272-337 (370)
193 4b4t_Q 26S proteasome regulato 98.0 6.1E-05 2.1E-09 76.3 14.0 158 466-623 12-203 (434)
194 3ro3_A PINS homolog, G-protein 98.0 2.1E-05 7.3E-10 66.7 8.9 133 460-592 11-160 (164)
195 2kat_A Uncharacterized protein 98.0 1E-05 3.6E-10 64.2 6.3 77 548-624 4-82 (115)
196 1dce_A Protein (RAB geranylger 98.0 0.00016 5.5E-09 75.2 16.7 167 443-613 45-244 (567)
197 2if4_A ATFKBP42; FKBP-like, al 98.0 1.1E-05 3.9E-10 78.2 7.6 151 428-596 180-334 (338)
198 3n71_A Histone lysine methyltr 97.9 1.3E-05 4.5E-10 81.1 7.5 123 503-625 319-465 (490)
199 3bee_A Putative YFRE protein; 97.9 5.5E-05 1.9E-09 56.7 8.4 70 558-627 3-75 (93)
200 3dss_A Geranylgeranyl transfer 97.9 0.00043 1.5E-08 65.6 16.2 186 439-627 41-270 (331)
201 1klx_A Cysteine rich protein B 97.8 0.00013 4.3E-09 60.0 10.1 90 535-626 31-128 (138)
202 1pc2_A Mitochondria fission pr 97.8 8.6E-05 2.9E-09 60.4 8.0 90 558-673 29-123 (152)
203 3n71_A Histone lysine methyltr 97.8 4.9E-05 1.7E-09 77.0 8.1 116 537-670 317-450 (490)
204 2l6j_A TPR repeat-containing p 97.7 8.8E-05 3E-09 58.1 7.6 68 559-626 2-69 (111)
205 3lvg_A Clathrin heavy chain 1; 97.7 3.4E-06 1.2E-10 81.2 -0.9 84 455-551 450-534 (624)
206 3qwp_A SET and MYND domain-con 97.6 0.00013 4.3E-09 72.8 9.1 116 536-669 294-427 (429)
207 1zu2_A Mitochondrial import re 97.6 4E-05 1.4E-09 63.1 4.2 86 507-595 16-125 (158)
208 2kat_A Uncharacterized protein 97.6 0.00019 6.5E-09 56.7 8.1 80 511-593 3-85 (115)
209 1dce_A Protein (RAB geranylger 97.6 0.00095 3.2E-08 69.4 15.0 151 472-627 43-224 (567)
210 1na3_A Designed protein CTPR2; 97.6 0.00015 5.3E-09 54.2 6.7 66 560-625 8-73 (91)
211 3qww_A SET and MYND domain-con 97.5 7.1E-05 2.4E-09 74.4 5.4 103 542-662 311-431 (433)
212 1klx_A Cysteine rich protein B 97.4 0.0018 6.2E-08 52.9 11.9 111 472-591 9-127 (138)
213 3ma5_A Tetratricopeptide repea 97.4 0.00039 1.3E-08 53.2 6.7 65 529-593 7-73 (100)
214 1nzn_A CGI-135 protein, fissio 97.3 0.001 3.5E-08 51.9 8.5 90 558-673 32-126 (126)
215 2kc7_A BFR218_protein; tetratr 97.3 0.00048 1.7E-08 52.5 6.3 64 535-598 6-72 (99)
216 2kc7_A BFR218_protein; tetratr 97.2 0.0013 4.4E-08 50.0 8.4 84 500-594 7-94 (99)
217 3lvg_A Clathrin heavy chain 1; 97.2 0.0014 4.9E-08 63.4 9.9 394 24-449 82-534 (624)
218 3ly7_A Transcriptional activat 97.1 0.0089 3.1E-07 56.8 13.7 137 456-594 192-343 (372)
219 1wy6_A Hypothetical protein ST 97.0 0.062 2.1E-06 41.8 15.3 141 468-627 17-157 (172)
220 3ly7_A Transcriptional activat 97.0 0.0033 1.1E-07 59.8 10.3 135 489-627 190-342 (372)
221 3u64_A Protein TP_0956; tetrat 97.0 0.017 5.7E-07 52.5 14.1 103 529-631 154-276 (301)
222 1y8m_A FIS1; mitochondria, unk 97.0 0.011 3.9E-07 46.8 11.2 90 558-673 36-129 (144)
223 3qww_A SET and MYND domain-con 96.9 0.0026 9E-08 63.2 9.0 92 505-596 310-422 (433)
224 3o48_A Mitochondria fission 1 96.8 0.004 1.4E-07 48.6 7.4 92 558-675 37-132 (134)
225 3qwp_A SET and MYND domain-con 96.8 0.0059 2E-07 60.8 10.2 99 500-598 294-413 (429)
226 1qsa_A Protein (soluble lytic 96.7 0.69 2.4E-05 48.0 28.7 113 473-589 229-347 (618)
227 3bee_A Putative YFRE protein; 96.7 0.014 4.7E-07 43.5 9.6 68 527-594 4-76 (93)
228 2v5f_A Prolyl 4-hydroxylase su 96.6 0.0083 2.8E-07 46.0 8.0 74 528-601 4-86 (104)
229 1pc2_A Mitochondria fission pr 96.3 0.014 4.7E-07 47.5 7.7 90 508-599 13-109 (152)
230 3mkq_A Coatomer beta'-subunit; 96.2 0.68 2.3E-05 50.7 24.0 127 298-450 633-759 (814)
231 3mkq_A Coatomer beta'-subunit; 96.2 0.1 3.5E-06 57.3 17.3 126 164-316 633-758 (814)
232 4ady_A RPN2, 26S proteasome re 95.8 2.8 9.6E-05 45.4 29.7 252 333-589 382-657 (963)
233 2v5f_A Prolyl 4-hydroxylase su 95.6 0.023 7.8E-07 43.4 6.2 66 561-626 5-77 (104)
234 3mkq_B Coatomer subunit alpha; 95.5 0.75 2.6E-05 38.4 15.0 104 435-556 13-116 (177)
235 4h7y_A Dual specificity protei 95.5 0.044 1.5E-06 43.8 7.1 52 575-626 74-125 (161)
236 4gns_B Protein CSD3, chitin bi 95.4 0.046 1.6E-06 57.7 9.4 59 564-622 340-398 (754)
237 1nzn_A CGI-135 protein, fissio 95.2 0.19 6.5E-06 39.2 9.9 90 508-599 16-112 (126)
238 1wy6_A Hypothetical protein ST 95.1 0.25 8.7E-06 38.5 10.0 141 135-291 17-157 (172)
239 3u64_A Protein TP_0956; tetrat 94.1 0.055 1.9E-06 49.2 5.2 82 509-593 179-272 (301)
240 3mkq_B Coatomer subunit alpha; 94.0 2.3 7.9E-05 35.5 16.4 99 337-453 17-115 (177)
241 4h7y_A Dual specificity protei 93.4 0.29 9.8E-06 39.2 7.4 55 542-596 73-129 (161)
242 3lpz_A GET4 (YOR164C homolog); 93.2 5.5 0.00019 37.2 19.0 165 195-382 38-213 (336)
243 3ffl_A Anaphase-promoting comp 91.3 0.5 1.7E-05 38.7 6.5 124 487-622 12-149 (167)
244 4b4t_P 26S proteasome regulato 90.8 10 0.00035 37.6 17.0 126 331-456 183-324 (445)
245 2wpv_A GET4, UPF0363 protein Y 90.1 12 0.0004 34.7 20.6 164 196-382 37-214 (312)
246 3ffl_A Anaphase-promoting comp 89.7 2.8 9.4E-05 34.4 9.6 24 533-556 126-149 (167)
247 3txn_A 26S proteasome regulato 88.6 18 0.00062 34.9 16.2 23 464-486 105-127 (394)
248 3o48_A Mitochondria fission 1 88.3 1.3 4.3E-05 34.7 6.4 71 527-597 38-114 (134)
249 1y8m_A FIS1; mitochondria, unk 88.0 4.4 0.00015 32.2 9.3 72 526-597 36-113 (144)
250 1zbp_A Hypothetical protein VP 87.8 4.1 0.00014 36.5 10.2 121 467-597 6-136 (273)
251 4fhn_B Nucleoporin NUP120; pro 87.3 10 0.00035 43.1 16.0 165 328-511 815-989 (1139)
252 1v54_E Cytochrome C oxidase po 87.3 2.4 8.2E-05 31.1 6.8 63 473-537 25-87 (109)
253 2ff4_A Probable regulatory pro 86.8 1.3 4.5E-05 43.2 7.3 58 566-623 176-233 (388)
254 4gns_B Protein CSD3, chitin bi 86.5 4.6 0.00016 42.8 11.5 51 503-556 347-398 (754)
255 3ltm_A Alpha-REP4; protein eng 85.9 16 0.00055 31.5 16.5 49 190-239 31-79 (211)
256 1wdy_A 2-5A-dependent ribonucl 84.8 21 0.0007 32.4 14.5 59 199-258 152-213 (285)
257 4fhn_B Nucleoporin NUP120; pro 84.4 30 0.001 39.3 17.8 148 197-346 817-992 (1139)
258 1qsa_A Protein (soluble lytic 84.3 42 0.0014 34.8 35.4 112 239-353 229-347 (618)
259 3lpz_A GET4 (YOR164C homolog); 83.1 30 0.001 32.3 22.2 165 429-624 37-216 (336)
260 2ff4_A Probable regulatory pro 82.6 7.4 0.00025 37.8 10.5 72 461-533 174-249 (388)
261 1v54_E Cytochrome C oxidase po 82.3 12 0.0004 27.6 8.4 63 239-302 25-87 (109)
262 2y69_E Cytochrome C oxidase su 81.8 5.1 0.00017 31.2 6.8 63 473-537 68-130 (152)
263 2uwj_G Type III export protein 79.8 15 0.00053 26.8 8.9 51 63-116 46-96 (115)
264 1zbp_A Hypothetical protein VP 79.8 2.6 8.8E-05 37.8 5.4 58 537-594 5-64 (273)
265 1n11_A Ankyrin; clathrin, BAND 79.7 49 0.0017 32.4 17.7 51 166-217 116-168 (437)
266 2uwj_G Type III export protein 78.7 17 0.00057 26.6 8.4 84 408-496 22-105 (115)
267 2p58_C Putative type III secre 77.9 18 0.00062 26.5 8.9 84 408-496 23-106 (116)
268 2qx5_A Nucleoporin NIC96; mRNA 77.6 72 0.0025 33.2 16.4 82 361-454 299-383 (661)
269 3esl_A Checkpoint serine/threo 77.5 15 0.00052 31.2 9.1 46 545-590 95-144 (202)
270 3ltj_A Alpharep-4; protein eng 75.7 36 0.0012 28.8 17.5 49 190-239 26-74 (201)
271 4b4t_P 26S proteasome regulato 75.6 66 0.0022 31.8 22.5 96 461-556 140-245 (445)
272 2y69_E Cytochrome C oxidase su 74.7 15 0.00052 28.7 7.5 60 106-168 71-130 (152)
273 2wpv_A GET4, UPF0363 protein Y 74.0 56 0.0019 30.2 22.4 168 429-624 35-217 (312)
274 3kea_A K1L; tropism, ANK repea 73.8 20 0.00069 32.8 10.3 51 165-215 131-181 (285)
275 1wdy_A 2-5A-dependent ribonucl 73.0 53 0.0018 29.5 14.4 22 197-218 7-28 (285)
276 4ady_A RPN2, 26S proteasome re 72.5 1.2E+02 0.004 33.2 30.2 394 162-571 232-671 (963)
277 4b4t_R RPN7, 26S proteasome re 72.4 11 0.00039 37.1 8.5 95 495-590 133-237 (429)
278 3kea_A K1L; tropism, ANK repea 71.7 53 0.0018 29.9 12.6 113 132-248 66-182 (285)
279 4a1g_A Mitotic checkpoint seri 68.1 32 0.0011 27.8 8.5 46 580-625 84-131 (152)
280 3eu9_A Huntingtin-interacting 68.0 60 0.0021 28.1 12.0 47 36-83 17-66 (240)
281 2zu6_B Programmed cell death p 67.4 51 0.0018 30.5 11.1 65 196-261 170-239 (307)
282 1k1a_A B-cell lymphoma 3-encod 64.4 58 0.002 28.4 11.0 16 202-217 86-101 (241)
283 4b4t_R RPN7, 26S proteasome re 64.4 28 0.00096 34.3 9.4 96 428-523 132-238 (429)
284 2wvi_A Mitotic checkpoint seri 62.7 41 0.0014 27.5 8.4 31 594-624 95-125 (164)
285 2p58_C Putative type III secre 61.1 46 0.0016 24.4 10.2 46 335-382 50-95 (116)
286 3esl_A Checkpoint serine/threo 60.9 57 0.002 27.7 9.1 45 275-319 95-140 (202)
287 1ug3_A EIF4GI, eukaryotic prot 60.5 1.1E+02 0.0039 28.7 14.0 26 60-85 15-40 (339)
288 3eu9_A Huntingtin-interacting 60.4 84 0.0029 27.2 11.5 19 65-83 15-33 (240)
289 3txn_A 26S proteasome regulato 59.2 1.3E+02 0.0044 29.0 19.7 124 326-451 20-163 (394)
290 3ltm_A Alpha-REP4; protein eng 59.1 84 0.0029 26.7 20.0 17 492-508 156-172 (211)
291 3hra_A Ankyrin repeat family p 58.4 61 0.0021 27.2 9.7 17 66-82 12-28 (201)
292 3ltj_A Alpharep-4; protein eng 57.8 85 0.0029 26.4 18.6 60 426-486 120-179 (201)
293 3bqo_A Telomeric repeat-bindin 56.6 43 0.0015 28.2 7.4 40 568-607 124-163 (211)
294 4b4t_S RPN3, 26S proteasome re 53.5 53 0.0018 32.8 9.0 25 495-519 233-257 (523)
295 4a1g_A Mitotic checkpoint seri 52.5 89 0.003 25.2 8.6 51 242-292 83-134 (152)
296 2nsz_A Programmed cell death p 48.9 53 0.0018 25.6 6.8 64 430-493 10-78 (129)
297 1n11_A Ankyrin; clathrin, BAND 47.7 2E+02 0.007 27.8 17.9 50 34-83 20-71 (437)
298 3eiq_C Programmed cell death p 47.7 76 0.0026 30.0 8.8 29 58-86 56-84 (358)
299 3aji_A 26S proteasome non-ATPa 44.7 1.5E+02 0.0051 25.4 10.6 15 66-80 13-27 (231)
300 3ljn_A Hypothetical protein; a 44.2 1.2E+02 0.0041 28.6 10.1 21 63-83 24-44 (364)
301 3l6a_A Eukaryotic translation 43.1 2.2E+02 0.0076 27.0 11.6 26 60-85 16-41 (364)
302 2d2s_A Exocyst complex compone 42.4 61 0.0021 28.5 6.8 86 465-554 25-116 (235)
303 2ion_A PDCD4, programmed cell 41.1 46 0.0016 26.9 5.4 63 430-492 12-79 (152)
304 2d2s_A Exocyst complex compone 40.5 1.1E+02 0.0038 26.9 8.2 23 131-153 24-46 (235)
305 4aez_C MAD3, mitotic spindle c 40.1 61 0.0021 28.1 6.2 48 543-590 131-179 (223)
306 2qx5_A Nucleoporin NIC96; mRNA 38.5 3.6E+02 0.012 28.1 21.7 81 299-382 299-382 (661)
307 1ya0_A SMG-7 transcript varian 38.2 65 0.0022 32.3 7.1 41 575-615 166-206 (497)
308 4b4t_S RPN3, 26S proteasome re 36.4 61 0.0021 32.4 6.4 69 529-597 231-306 (523)
309 3jxi_A Vanilloid receptor-rela 35.6 91 0.0031 27.5 7.4 55 231-285 9-72 (260)
310 3d9h_A CDNA FLJ77766, highly s 35.3 2.5E+02 0.0085 25.2 11.6 58 26-84 13-84 (285)
311 4gq2_M Nucleoporin NUP120; bet 35.1 2.3E+02 0.0079 31.3 11.5 86 499-590 816-926 (950)
312 4gq2_M Nucleoporin NUP120; bet 35.0 3.7E+02 0.013 29.6 13.2 57 330-389 815-871 (950)
313 2fu4_A Ferric uptake regulatio 33.2 1.2E+02 0.0041 20.9 7.0 62 248-310 6-68 (83)
314 2rfa_A Transient receptor pote 32.9 1.9E+02 0.0064 24.8 8.9 19 199-217 201-219 (232)
315 3utm_A Tankyrase-1; tankyrase, 32.5 3E+02 0.01 25.3 14.4 255 29-325 25-308 (351)
316 2zu6_B Programmed cell death p 31.9 2.7E+02 0.0091 25.6 9.6 55 328-382 6-64 (307)
317 3bu8_A Telomeric repeat-bindin 31.7 1.9E+02 0.0065 24.8 7.6 48 509-556 88-141 (235)
318 1oyz_A Hypothetical protein YI 31.7 2.8E+02 0.0095 24.7 21.8 19 292-310 140-158 (280)
319 2nsz_A Programmed cell death p 31.7 1.8E+02 0.006 22.6 7.3 62 329-391 11-77 (129)
320 3b7b_A Euchromatic histone-lys 31.3 2.5E+02 0.0085 24.0 11.7 23 265-287 213-235 (237)
321 1oyz_A Hypothetical protein YI 31.2 2.8E+02 0.0096 24.6 21.2 60 527-590 204-263 (280)
322 3jxi_A Vanilloid receptor-rela 31.0 1.9E+02 0.0066 25.3 8.8 18 98-116 13-30 (260)
323 2fe3_A Peroxide operon regulat 30.5 1.2E+02 0.0042 24.1 6.4 61 249-310 12-72 (145)
324 3ygs_P Procaspase 9; apoptosis 30.0 65 0.0022 23.5 4.2 36 340-375 52-87 (97)
325 2wvi_A Mitotic checkpoint seri 28.2 2.4E+02 0.0084 23.0 9.6 53 475-528 77-130 (164)
326 3b7b_A Euchromatic histone-lys 28.1 2.8E+02 0.0096 23.6 11.7 14 305-318 218-231 (237)
327 2w57_A Ferric uptake regulatio 28.1 1.9E+02 0.0065 23.1 7.2 63 248-311 6-69 (150)
328 1s70_B 130 kDa myosin-binding 28.0 3.3E+02 0.011 24.4 10.3 26 59-84 40-65 (299)
329 3twr_A Tankyrase-2; ankyrin re 28.0 2E+02 0.007 22.8 7.7 15 202-216 15-29 (165)
330 4ets_A Ferric uptake regulatio 27.0 1.5E+02 0.0053 24.0 6.5 70 372-442 13-84 (162)
331 3qil_A Clathrin heavy chain 1; 26.7 13 0.00043 28.4 -0.2 53 226-281 34-86 (125)
332 2etb_A Transient receptor pote 26.2 2E+02 0.0069 25.1 8.0 91 231-322 6-115 (256)
333 3bqo_A Telomeric repeat-bindin 26.1 1.2E+02 0.004 25.6 5.4 17 201-217 126-142 (211)
334 2cos_A Serine/threonine protei 25.3 47 0.0016 20.9 2.2 42 9-55 9-52 (54)
335 3aji_A 26S proteasome non-ATPa 25.0 3.2E+02 0.011 23.2 10.6 19 94-113 10-28 (231)
336 1bd8_A P19INK4D CDK4/6 inhibit 24.9 2.5E+02 0.0084 21.9 9.8 18 64-81 7-24 (156)
337 2fe3_A Peroxide operon regulat 24.6 1.7E+02 0.0059 23.1 6.3 62 482-545 11-72 (145)
338 3bu8_A Telomeric repeat-bindin 23.8 69 0.0024 27.4 3.6 42 566-607 119-160 (235)
339 3bge_A Predicted ATPase; struc 23.8 3.3E+02 0.011 23.0 8.1 46 228-273 8-56 (201)
340 2ion_A PDCD4, programmed cell 23.8 1.8E+02 0.0062 23.3 6.2 22 361-382 14-35 (152)
341 1mzb_A Ferric uptake regulatio 23.4 2.6E+02 0.009 21.7 7.1 61 249-310 8-69 (136)
342 2rfa_A Transient receptor pote 23.3 3.4E+02 0.012 23.0 10.3 56 232-291 126-183 (232)
343 3hra_A Ankyrin repeat family p 23.2 3.1E+02 0.011 22.5 9.0 14 279-292 158-171 (201)
344 3mv2_A Coatomer subunit alpha; 22.5 4.6E+02 0.016 24.2 13.7 61 552-626 196-258 (325)
345 2xig_A Ferric uptake regulatio 22.5 1.8E+02 0.0061 23.3 6.0 63 248-311 16-78 (150)
346 2etb_A Transient receptor pote 22.1 1.2E+02 0.0042 26.6 5.6 87 265-352 5-114 (256)
347 3twr_A Tankyrase-2; ankyrin re 20.8 3.1E+02 0.011 21.6 7.6 20 198-217 45-64 (165)
348 2r9g_A AAA ATPase, central reg 20.8 3.9E+02 0.013 22.6 10.2 66 225-291 12-85 (204)
349 2o03_A Probable zinc uptake re 20.7 1.8E+02 0.0062 22.5 5.5 44 230-273 16-59 (131)
350 2fu4_A Ferric uptake regulatio 20.7 2.1E+02 0.0072 19.6 5.8 60 482-543 6-66 (83)
351 2b7e_A PRE-mRNA processing pro 20.6 1.4E+02 0.0046 19.5 3.7 34 6-39 2-36 (59)
352 2xig_A Ferric uptake regulatio 20.5 2.4E+02 0.0084 22.4 6.4 61 483-545 17-77 (150)
353 2pnn_A Transient receptor pote 20.4 4.4E+02 0.015 23.1 9.6 18 304-321 240-257 (273)
354 3ubw_A 14-3-3E, 14-3-3 protein 20.3 4.6E+02 0.016 23.3 10.3 161 464-625 37-229 (261)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-39 Score=349.85 Aligned_cols=501 Identities=9% Similarity=-0.055 Sum_probs=269.1
Q ss_pred HHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHH
Q 005802 66 CIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGR 145 (676)
Q Consensus 66 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 145 (676)
..+.|.+..+...+..++.++...|+.++..+.+.|++. +|+.+|++|.. ..|+..++..+..+|...|+++.|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYK-CAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCch-HHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 455677777777787777778888888888888888888 88888888875 5677778888888888888888888
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCee
Q 005802 146 QLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAV 225 (676)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 225 (676)
.+++.+... .++..+++.++.+|.+.|++++|.++|+++...... ...+.+.+..+ . ...++..
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~-------~-~~~~~~~ 201 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD------EKNANKLLMQD-------G-GIKLEAS 201 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------------CCC-------S-SCCHHHH
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc------ccccccccccc-------c-ccchhHH
Confidence 888776543 344456666666666666666666666643221100 00000000000 0 0023567
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHH--HH-HHHHHHhCCCCchhHHHHHH
Q 005802 226 SWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAK--EI-HSWVLKNGLISNPFVSSGIV 301 (676)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~ 301 (676)
+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..+...+...+..+.+. .+ +..+...+..+...+++.++
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 78888888888888888888888887743 433 33443433333222221111 11 22222223233333444445
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC--CCchhHHHHHHHHHHcCChHHHHHHH
Q 005802 302 DVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE--KNVVVWTALFSGYVKAQNCEALFDLL 379 (676)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 379 (676)
..|.+.|++++|. ++|+++.+ ++..+|+.++..|.+.|++++|+.+|
T Consensus 280 ~~~~~~g~~~~A~-------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 280 NKTSHEDELRRAE-------------------------------DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp CTTTTHHHHHHHH-------------------------------HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCcchHHHHH-------------------------------HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5555555555555 55555444 44455555555555555555555555
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CC
Q 005802 380 SEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ER 456 (676)
Q Consensus 380 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 456 (676)
++++... +.+..++..++.++...|+.++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++. ..
T Consensus 329 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 329 TKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp HHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 5552211 2244445555555555555555555555554332 3445555555555555555555555555543 22
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMI 536 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 536 (676)
+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..++
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 482 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELG 482 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 34455556666666666666666666555532 224455555555566666666666666655432 122355555666
Q ss_pred HHHhhcCCHHHHHHHHHhCC-------CCCc--HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 537 DLYGRANQLEKAIEFMKSIP-------TEED--AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|...|++++|+..++++.+..|+++..|..++.+|.+
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 66666666666666555553 1343 44555566666666666666666666665556555566666666666
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 005802 608 EGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~~ 626 (676)
.|++++|.+.++++.+..+
T Consensus 563 ~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAISP 581 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred hCCHHHHHHHHHHHHhcCC
Confidence 6666666666665555433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-37 Score=330.53 Aligned_cols=449 Identities=10% Similarity=0.003 Sum_probs=358.3
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC-CCchhhHHHHHHH
Q 005802 123 MDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE-EVNLISKNAMVAA 201 (676)
Q Consensus 123 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 201 (676)
++...|+.++..+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+.. +++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 57788999999999999999999999999865 45667888888999999999999999887754 5677888888888
Q ss_pred HHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHH
Q 005802 202 CCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEI 281 (676)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (676)
|.+.|++++|+++|+++. +.+.. ..++.+.+. ...|.+++..++..++.++.+.|++++|.++
T Consensus 160 ~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETN-PFRKD-----EKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp HHHTTCHHHHHHHHCSSC-TTC---------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhHHHHHHHHhccC-Ccccc-----ccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888543 11110 011111111 1235666788999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH-HhccCC----CCc
Q 005802 282 HSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRH-FDSLTE----KNV 356 (676)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~----~~~ 356 (676)
|+++.+.+. .+...+..+...+...+..+.+. .. .+ +..+.. ...
T Consensus 223 ~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~--~~---------------------------~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 223 YKEALMVDA-KCYEAFDQLVSNHLLTADEEWDL--VL---------------------------KLNYSTYSKEDAAFLR 272 (597)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHH--HH---------------------------HSCTHHHHGGGHHHHH
T ss_pred HHHHHHhCc-hhhHHHHHHHHhhcccchhHHHH--HH---------------------------hcCCcccccchHHHHH
Confidence 999988752 24445555554443332222111 00 00 111111 123
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDM 436 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 436 (676)
..|+.++..|.+.|++++|..+|+++ ... +++..++..++..+.+.|++++|..+++.+.+.+ +.+..++..++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSI-NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLAS 348 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTS-TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHh-hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHH
Confidence 45666788888999999999999998 332 6899999999999999999999999999999876 5578889999999
Q ss_pred HHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHH
Q 005802 437 YSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 513 (676)
|.+.|++++|..+++.+. ..+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999875 3467899999999999999999999999998842 335779999999999999999999
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL- 590 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 590 (676)
++|+++.+. .+++..+|..++.+|.+.|++++|.++|+++. .+.++.+|..++.+|...|++++|+..++++.+.
T Consensus 428 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 999999753 23468899999999999999999999999987 5668899999999999999999999999999988
Q ss_pred -----cCCC-CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 591 -----EGNN-KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 591 -----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
.|++ ...|..++.+|.+.|++++|.+.++++.+.++.
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4443 568999999999999999999999999887653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=4.3e-25 Score=222.98 Aligned_cols=368 Identities=13% Similarity=0.065 Sum_probs=253.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 005802 233 GYVQNGDAEEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMN 311 (676)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 311 (676)
.+.+.|++++|...++.+... .|+. ..+..+...+...|+++.|...++...+.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 345556666666666655542 2332 333344444555666666666665555543 334555666666666666666
Q ss_pred HHHHHHHhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CchhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005802 312 YAESMLLLKGV--R-NSFSISSMIVGYSLQGNMEEARRHFDSLTE--K-NVVVWTALFSGYVKAQNCEALFDLLSEFVTK 385 (676)
Q Consensus 312 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 385 (676)
+|...|++... | +..+|..+...+...|++++|.+.|+++.+ | +...+..+...+...|++++|...|++++..
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66655554432 2 233455555556666666666666666543 3 3345666677777778888888888776433
Q ss_pred CCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHH
Q 005802 386 EGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYN 462 (676)
Q Consensus 386 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 462 (676)
.+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|++.. +.+..++.
T Consensus 165 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 165 --QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 23345667777777777788888887777777764 4456677777888888888888888887654 23566788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR 541 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 541 (676)
.+...+...|++++|.+.|+++.+. .| +..++..+..++.+.|++++|...++++.+. .+++..++..+...+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 8888888888888888888888874 34 4567788888888888888888888888753 23447788888888888
Q ss_pred cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 542 ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
.|++++|.+.++++. .+.+..++..++.++...|++++|...++++++..|+++..+..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 888888888888877 344667788888888888888888888888888888888888888888877663
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.4e-25 Score=220.44 Aligned_cols=350 Identities=15% Similarity=0.093 Sum_probs=305.3
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHH
Q 005802 266 LSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNME 342 (676)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 342 (676)
...+.+.|++++|...+..+.+.. +.+...+..+...+...|+++.|...+..... .+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455677899999999999998875 34566777888899999999999998876554 45678999999999999999
Q ss_pred HHHHHHhccCC--C-CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHHhhcChhHHHHHHHHH
Q 005802 343 EARRHFDSLTE--K-NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD-ALILVILLGACALQAALHPGKEIHAYI 418 (676)
Q Consensus 343 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 418 (676)
+|++.|+++.. | +..+|..+..++.+.|++++|+..|++++.. .|+ ...+..+...+...|++++|...+..+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999998864 4 4557999999999999999999999998543 344 445666777788899999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHh
Q 005802 419 LRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAV 494 (676)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ 494 (676)
.+.. +.+..++..+...+.+.|++++|...|+++. .| +...|..+...+...|++++|...+++.... .| +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 8875 5567889999999999999999999999886 33 5668889999999999999999999999884 45 477
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVC 571 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 571 (676)
++..+..++...|++++|...++++.+. .|+ ...|..++.++.+.|++++|.+.++++. .+++..++..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 8889999999999999999999999753 455 7889999999999999999999999987 667888999999999
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
...|++++|...++++.+..|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999998653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.5e-26 Score=236.70 Aligned_cols=214 Identities=11% Similarity=0.117 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 005802 241 EEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLL 319 (676)
Q Consensus 241 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 319 (676)
..+..+.+.+.++++.+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~----- 81 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS----- 81 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS-----
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh-----
Confidence 3455566777777765543 4578888999999999999999999999999999988888888887765443221
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHH
Q 005802 320 KGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILL 399 (676)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 399 (676)
+.+..+.|.++|++| ...|+.||..||+.+|
T Consensus 82 ------------------------------------------------~~~~l~~A~~lf~~M-~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 82 ------------------------------------------------PNPGLSRGFDIFKQM-IVDKVVPNEATFTNGA 112 (501)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHH-HHTTCCCCHHHHHHHH
T ss_pred ------------------------------------------------hcchHHHHHHHHHHH-HHhCCCCCHHHHHHHH
Confidence 234467888899999 8889999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHH
Q 005802 400 GACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAIL 479 (676)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 479 (676)
.+|++.|++++|..+++.|.+.|+.||..+|+++|.+|++. |++++|.+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-------------------------------g~~~~A~~ 161 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-------------------------------GDADKAYE 161 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-------------------------------TCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-------------------------------CCHHHHHH
Confidence 99999999999999999999988888777666665555554 44455555
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHh
Q 005802 480 LFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540 (676)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 540 (676)
+|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+. +..|+..||+.++..+.
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555444 55555555555555444
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.6e-26 Score=233.01 Aligned_cols=184 Identities=11% Similarity=0.165 Sum_probs=165.8
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhCCCCchh
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRN---------VKCAKEIHSWVLKNGLISNPF 295 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 295 (676)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccC----CCCchhHHHHHHHHHHcCC
Q 005802 296 VSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT----EKNVVVWTALFSGYVKAQN 371 (676)
Q Consensus 296 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~ 371 (676)
+|+.+|.+|++.|+++.|. ++|++|. .||..+||++|.+|++.|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~-------------------------------~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAF-------------------------------DMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHH-------------------------------HHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCHHHHH-------------------------------HHHHHHHHcCCCCccceehHHHHHHHHCCC
Confidence 9999999999988888888 5555554 4788999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005802 372 CEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC 440 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (676)
+++|.++|++| ...|+.||..||+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 156 ~~~A~~l~~~M-~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 156 ADKAYEVDAHM-VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999 888999999999999999999999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.9e-22 Score=210.59 Aligned_cols=427 Identities=11% Similarity=-0.003 Sum_probs=299.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC
Q 005802 193 ISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG 271 (676)
Q Consensus 193 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 271 (676)
..+......+.+.|++++|+..|+++.. .|+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3455566677777777777777766543 4566677777777777777777777777776643 2244566677777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCchhHHHH---HHHHHhcCCHHHH
Q 005802 272 LRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV----RNSFSISSM---IVGYSLQGNMEEA 344 (676)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l---i~~~~~~~~~~~a 344 (676)
.|++++|...++.+.+.+. ++......++..+.+......+.+.+..+.. ++...+... .............
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 7777777777777776653 3333333444433333222222222211100 000000000 0000001111111
Q ss_pred HHHHhccCC---------C-CchhHHHHHHHHHH---cCChHHHHHHHHHHHH-----cCCC-------CCCHhHHHHHH
Q 005802 345 RRHFDSLTE---------K-NVVVWTALFSGYVK---AQNCEALFDLLSEFVT-----KEGV-------VTDALILVILL 399 (676)
Q Consensus 345 ~~~~~~~~~---------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~~-------~p~~~~~~~ll 399 (676)
...+..... | +...+......+.. .|++++|+..|++++. .... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 122222211 1 13334444444444 8999999999999854 2111 22345677778
Q ss_pred HHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhH
Q 005802 400 GACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEK 476 (676)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 476 (676)
..+...|+++.|...++.+.+.... ...+..+...|...|++++|...++.+.+ .+...|..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999887644 88888999999999999999999998753 366788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 477 AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|...+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.+.|++++|.+.++++.
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999853 2356788889999999999999999999997641 2247788899999999999999999999876
Q ss_pred ----CCCc----HHHHHHHHHHHHH---hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 557 ----TEED----AVILGSFLNVCRL---NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 557 ----~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
..++ ...+..++.++.. .|++++|...++++.+..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 1222 3388889999999 9999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 005802 626 G 626 (676)
Q Consensus 626 ~ 626 (676)
+
T Consensus 480 ~ 480 (514)
T 2gw1_A 480 R 480 (514)
T ss_dssp S
T ss_pred c
Confidence 4
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.8e-22 Score=209.71 Aligned_cols=241 Identities=7% Similarity=-0.062 Sum_probs=199.3
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005802 356 VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVD 435 (676)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 435 (676)
...+..+...+...|++++|+..|++++... |+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 3467778888888999999999999874432 337777888888889999999999998887764 456778888999
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHH
Q 005802 436 MYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMG 512 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 512 (676)
.|...|++++|...|+... ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998764 3356788889999999999999999999998752 33567788888999999999999
Q ss_pred HHHHHHchhhcCCCCC----HHHHHHHHHHHhh---cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 513 EKYFNSMTADYKISPE----TDHYACMIDLYGR---ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 513 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
...++.+.....-.|+ ...+..+...+.. .|++++|.+.++++. .+.+...+..+..++...|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998754222232 3488899999999 999999999999887 555778889999999999999999999
Q ss_pred HHHHHcccCCCCccHHHH
Q 005802 584 EEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l 601 (676)
++++.+..|+++..+..+
T Consensus 472 ~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 472 FEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHH
Confidence 999999999988776665
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.4e-21 Score=204.88 Aligned_cols=422 Identities=13% Similarity=0.039 Sum_probs=291.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 005802 193 ISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACC 270 (676)
Q Consensus 193 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 270 (676)
..+..+...+.+.|++++|+..|++... +.+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 4455566667777777777777765432 3456667777777777777777777777777643 224556666777777
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHH
Q 005802 271 GLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR------NSFSISSMIVGYSLQGNMEEA 344 (676)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a 344 (676)
..|++++|...++ .... .|+. ....+..+...+....|...++..... ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 7777777777775 2222 1221 112233444444556666666665442 122334455556666777777
Q ss_pred HHHHhccCCCCch---hHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCC-----HhHHHHHHHHHHhhcCh
Q 005802 345 RRHFDSLTEKNVV---VWTALFSGYVK--------AQNCEALFDLLSEFVTKEGVVTD-----ALILVILLGACALQAAL 408 (676)
Q Consensus 345 ~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~ 408 (676)
...+......+.. ....+...+.. .|++++|+.++++++....-.++ ..++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 7777666654433 22333322222 24788888888887332211111 22455566677788899
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
+.|...+..+.+.. |+...+..+...+...|++++|...|+++. ..+..+|..+...+...|++++|...+++..
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999998888865 447788888889999999999999998775 3456788889999999999999999999998
Q ss_pred HCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----
Q 005802 486 EKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE---- 559 (676)
Q Consensus 486 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---- 559 (676)
+.. +.+...+..+...+...|++++|...++++... .|+ ...+..+...+...|++++|.+.++++. ..|
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 853 224667888888999999999999999998764 344 7788889999999999999999998876 111
Q ss_pred ---cHHHHHHHHHHHHHh----------CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 560 ---DAVILGSFLNVCRLN----------RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 560 ---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
....+.....++... |++++|+..++++.+..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 112244455667777 9999999999999999999999999999999999999999999999887654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.2e-20 Score=194.55 Aligned_cols=335 Identities=13% Similarity=0.068 Sum_probs=231.3
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005802 223 DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVD 302 (676)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (676)
+...+..+...+.+.|++++|+.+|+.+.... +.+..++..+..++...|+++.|...++.+.+.+. .+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 44556666666777777777777777666532 23455566666666666666666666666665531 22333333333
Q ss_pred HHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCC---c---hhHHHHHHHHHHcCChHHHH
Q 005802 303 VYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKN---V---VVWTALFSGYVKAQNCEALF 376 (676)
Q Consensus 303 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~li~~~~~~~~~~~a~ 376 (676)
+|.+.|+++. |.+.|+++.+.+ . ..+..++..+...
T Consensus 103 ~~~~~g~~~~-------------------------------A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 144 (450)
T 2y4t_A 103 LLLKQGKLDE-------------------------------AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ------- 144 (450)
T ss_dssp HHHHTTCHHH-------------------------------HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHcCCHHH-------------------------------HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------
Confidence 3333333333 336665554322 1 3344443331110
Q ss_pred HHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 005802 377 DLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI-- 454 (676)
Q Consensus 377 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 454 (676)
.+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++.
T Consensus 145 -----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 145 -----------------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp -----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11122333556667777777777666654 4566777778888888888888888888765
Q ss_pred -CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-hHHHHH------------HHHhhccCcHHHHHHHHHHch
Q 005802 455 -ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA-VTFVAI------------LSAFRHCGSVEMGEKYFNSMT 520 (676)
Q Consensus 455 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l------------l~~~~~~g~~~~a~~~~~~~~ 520 (676)
+.+..+|..+...+...|++++|+..|+++... .|+. ..+..+ ...|...|++++|...|+.+.
T Consensus 207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346778888889999999999999999998874 4543 334333 778899999999999999998
Q ss_pred hhcCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 521 ADYKISPE-----TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 521 ~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
.. .|+ ...+..++.++.+.|++++|++.++++. .+.+...|..++.+|...|++++|...++++++..|+
T Consensus 285 ~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 285 KT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred hc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 64 344 4578889999999999999999999987 5567889999999999999999999999999999999
Q ss_pred CCccHHHHHHH------------HHhcC-----ChhHHHHHHHH
Q 005802 594 NKARYVQLANV------------YAAEG-----NWAEMGRIRKQ 620 (676)
Q Consensus 594 ~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 620 (676)
++..+..++.+ |...| +.+++.+.+++
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999844 55555 55677777775
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=7.1e-20 Score=188.77 Aligned_cols=377 Identities=11% Similarity=0.042 Sum_probs=240.8
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHH
Q 005802 189 EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASAL 266 (676)
Q Consensus 189 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 266 (676)
+.+...+..+...+.+.|++++|+..|+++.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45677889999999999999999999987653 4577889999999999999999999999998854 23567888899
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 005802 267 SACCGLRNVKCAKEIHSWVLKNGLISNP---FVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEE 343 (676)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 343 (676)
..+...|++++|...++.+.+... .+. ..+..+...+...+ +..+...+...|++++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHH
Confidence 999999999999999999987642 233 45555555443321 2223334555566666
Q ss_pred HHHHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 005802 344 ARRHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILR 420 (676)
Q Consensus 344 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 420 (676)
|...|+++.+ .+...+..+...|.+.|++++|+..|++++.. .+.+..++..+...+...|++++|...++.+.+
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665555432 23444555555555555555555555554222 122334444444444444444444444444443
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----HhH
Q 005802 421 MGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-----AVT 495 (676)
Q Consensus 421 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~ 495 (676)
.. +.+...+..+.... ....+..+...+...|++++|...|+++.+. .|+ ...
T Consensus 240 ~~-p~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~ 297 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVK-------------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRS 297 (450)
T ss_dssp HC-TTCHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred hC-CChHHHHHHHHHHH-------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHH
Confidence 22 11111111110000 0001122367788888888888888888873 454 336
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHH--
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNV-- 570 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-- 570 (676)
+..+..++.+.|++++|...++.+... .| +...|..+..+|...|++++|.+.++++. ..| ++..+..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 677778888888888888888887643 34 47888888888888888888888888876 334 45555555532
Q ss_pred ----------HHHhC-----CHhHHHHHHHH-HHcccCCCCc----------cHHHHHHHHHhcCChhH
Q 005802 571 ----------CRLNR-----NAELAGEAEEK-LLRLEGNNKA----------RYVQLANVYAAEGNWAE 613 (676)
Q Consensus 571 ----------~~~~~-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 613 (676)
|...| +.+++.+.+++ +.+..|++.. .+..++.+|...|+.++
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22333 56777888886 6667776432 34455555555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=3.1e-20 Score=196.29 Aligned_cols=428 Identities=10% Similarity=-0.019 Sum_probs=287.5
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC--CCchhhHHHHHHHH
Q 005802 125 EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE--EVNLISKNAMVAAC 202 (676)
Q Consensus 125 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 202 (676)
...+..+...+.+.|+++.|...++.+.+.. +.+...+..+..+|.+.|++++|.+.++++.. +.+...+..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3456777777788888888888888887763 12334566677777777777777777765544 33445555566666
Q ss_pred HhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCcHhHHHHHHHHHhCCCChH
Q 005802 203 CREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGEN------GVRWNEHTFASALSACCGLRNVK 276 (676)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~ 276 (676)
...|++++|+..|+.+...|+ ..+..+..+...+....|...++.+... ...|+...
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~--------------- 166 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS--------------- 166 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH---------------
T ss_pred HHcCCHHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH---------------
Confidence 666666666666643332222 1122233333444445555555555432 11122222
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch---hHHHHHHHHH--------hcCCHHHHH
Q 005802 277 CAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF---SISSMIVGYS--------LQGNMEEAR 345 (676)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~--------~~~~~~~a~ 345 (676)
+..+....+.+.+...+......+.. ....+...+. ..|++++|.
T Consensus 167 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 167 ------------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp ------------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 22222333333333333322222211 1111111111 125677888
Q ss_pred HHHhccCCCCc----------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHH
Q 005802 346 RHFDSLTEKNV----------VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIH 415 (676)
Q Consensus 346 ~~~~~~~~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 415 (676)
.+++++.+.++ .++..+...+...|++++|+..|++.+.. .|+...+..+...+...|+++.|...+
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 88887765322 24666677888899999999999998443 455777888888888999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005802 416 AYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD 492 (676)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 492 (676)
..+.+.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+...|++++|...++++.+.. +.+
T Consensus 300 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 377 (537)
T 3fp2_A 300 QKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTL 377 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9988875 5567889999999999999999999999875 3356789999999999999999999999999853 334
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC----CHHHHHHHHHHHhhc----------CCHHHHHHHHHhCC--
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP----ETDHYACMIDLYGRA----------NQLEKAIEFMKSIP-- 556 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~-- 556 (676)
...+..+...+...|++++|...++++.....-.+ ....+..+..++.+. |++++|...++++.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 66888889999999999999999999865421111 123345556777788 99999999999987
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
.+.+...+..+..++...|++++|...++++.+..|.++....
T Consensus 458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 5567888999999999999999999999999999998766544
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.5e-16 Score=172.08 Aligned_cols=564 Identities=12% Similarity=0.090 Sum_probs=375.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC---------------CCcchHHHHHHHHHhc
Q 005802 5 NLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE---------------RNVFSWNTIISACIKS 69 (676)
Q Consensus 5 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~ll~~~~~~ 69 (676)
+.+.+++++..|.+.+++.+....-.+...|...=..+...++|++... .|+.+....|.+.++.
T Consensus 659 ~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~ 738 (1630)
T 1xi4_A 659 SVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKT 738 (1630)
T ss_pred CHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHh
Confidence 4678888999999877776665555555555555456666666666542 5788899999999999
Q ss_pred CChHHHHHHhccCC---------------CCCc---------ccH-HHHHHHHHhcCCChhHHHHHHHHhHhccCCCC--
Q 005802 70 HDLKQARSLFDSSP---------------HKDL---------VTY-NSMLCGYINAEGYEADALKLFIEMQSADEHIR-- 122 (676)
Q Consensus 70 g~~~~A~~~~~~~~---------------~~~~---------~~~-~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~-- 122 (676)
|.+.+.+++.++-. -||. ..| .-|+.-+.++ +.. .-+++|-.=.. ..-.
T Consensus 739 ~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n-~~~-~~ie~yv~~vn--p~~~p~ 814 (1630)
T 1xi4_A 739 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN-NLQ-KYIEIYVQKVN--PSRLPV 814 (1630)
T ss_pred CCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhc-Cch-hHHHHHHhccC--Ccccch
Confidence 99999888886543 0221 111 1222222222 222 22333311111 1111
Q ss_pred ---------CChhhHHHHHHHH-------------HccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHH-
Q 005802 123 ---------MDEFTVTSTLNLC-------------VKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEA- 179 (676)
Q Consensus 123 ---------p~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A- 179 (676)
-+......++..- -+.+++...+..++.-...| ..+..++++|...|...++-.+.
T Consensus 815 Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~f 893 (1630)
T 1xi4_A 815 VIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERF 893 (1630)
T ss_pred hhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHH
Confidence 1222233333322 22222222233333333333 44566899999999865543322
Q ss_pred ------------HHhhhhcCCCCch--hhH------HHHHHHHHhcCChhHHHH-HHhh---------------------
Q 005802 180 ------------CRVFEGCTEEVNL--ISK------NAMVAACCREGEMEMALK-TFWR--------------------- 217 (676)
Q Consensus 180 ------------~~~~~~~~~~~~~--~~~------~~l~~~~~~~g~~~~A~~-~~~~--------------------- 217 (676)
-+..++- +|.. ..| .-|++.+-+.|.+...-+ +.++
T Consensus 894 L~~n~~yd~~~vgkyce~r--Dp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Li 971 (1630)
T 1xi4_A 894 LRENPYYDSRVVGKYCEKR--DPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLI 971 (1630)
T ss_pred hhccCcccHHHHHHHHHhc--CcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHH
Confidence 1222221 1111 011 224444444433332211 1111
Q ss_pred -------CCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005802 218 -------QPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGV--RWNEHTFASALSACCGLRNVKCAKEIHSWVLKN 288 (676)
Q Consensus 218 -------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (676)
+++..++.--...+.+|...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +..+..++......
T Consensus 972 dqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~- 1049 (1630)
T 1xi4_A 972 DQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN- 1049 (1630)
T ss_pred HHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-
Confidence 11122333345567788899999999999999874321 01223444455555555 55666666555431
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 005802 289 GLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVK 368 (676)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 368 (676)
.....+...+...|.+++|..+|++... .....+.+ +...+++++|.++.++.. +..+|..+..++..
T Consensus 1050 ------~d~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1050 ------YDAPDIANIAISNELFEEAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred ------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 1234477788889999999999999752 22222333 237889999999999875 46688999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005802 369 AQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEI 448 (676)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 448 (676)
.|++++|+..|.+. -|...|..++.+|.+.|+++++.+++....+.. +++...+.++.+|++.+++++...
T Consensus 1118 ~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred CCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 99999999999762 577888899999999999999999999888765 444445569999999999996555
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC
Q 005802 449 IFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE 528 (676)
Q Consensus 449 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 528 (676)
.. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +
T Consensus 1189 fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n 1249 (1630)
T 1xi4_A 1189 FI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------S 1249 (1630)
T ss_pred HH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------C
Confidence 43 4556677888999999999999999999985 479999999999999999999998773 5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAE 608 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 608 (676)
..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++.++.++|.+...|.-|+.+|.+.
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 688999999999999999999987764 456667778999999999999999999999999999999998888888764
Q ss_pred --CChhHHHHHHH
Q 005802 609 --GNWAEMGRIRK 619 (676)
Q Consensus 609 --g~~~~A~~~~~ 619 (676)
++..++.+.+.
T Consensus 1328 ~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1328 KPQKMREHLELFW 1340 (1630)
T ss_pred CHHHHHHHHHHHH
Confidence 34555555544
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=6.1e-16 Score=167.38 Aligned_cols=200 Identities=13% Similarity=0.002 Sum_probs=96.0
Q ss_pred chhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCC
Q 005802 161 FAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGD 239 (676)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 239 (676)
.+|..+..++...|++++|+..|.+. .+...|..++..+.+.|++++|.+.+..... .+++...+.++.+|++.++
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 34555555555555555555555442 2444444455555555555555555533221 1222222335555555555
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 005802 240 AEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLL 319 (676)
Q Consensus 240 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 319 (676)
+++...+. . .|+...+..+...|...|+++.|..+|..+ ..|..+..+|.+.|+++.|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44322221 1 133344444555555555555555555542 2455555555555555555555544
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 320 KGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
. .+..+|..+..+|...|++..|......+ .-++..+..++..|.+.|.+++|+.+++..
T Consensus 1247 A--~n~~aWkev~~acve~~Ef~LA~~cgl~I-iv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1247 A--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred h--CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 23345555555555555555555544431 123334445555566666666666666543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=6.2e-18 Score=168.37 Aligned_cols=301 Identities=12% Similarity=0.023 Sum_probs=199.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CchhHHHHHHHHH
Q 005802 294 PFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE--K-NVVVWTALFSGYV 367 (676)
Q Consensus 294 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~ 367 (676)
+..+..+...+...|+++.|...+..... .+...+..+...+...|++++|...|+++.+ | +...|..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34455566666666666666666554432 2234444555555555555555555554432 1 3334455555555
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC---C-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 005802 368 KAQNCEALFDLLSEFVTKEGVVT---D-ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNM 443 (676)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (676)
..|++++|+..|++.+ . ..| + ...+..+..... ...+..+...+...|++
T Consensus 83 ~~~~~~~A~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVL-K--SNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHH-T--SCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHH-h--cCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 5555555555555541 1 122 1 111111100000 00112235677888888
Q ss_pred HHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHch
Q 005802 444 TYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMT 520 (676)
Q Consensus 444 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 520 (676)
++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888765 3356678888888889999999999999888753 3356778888888888999999999998887
Q ss_pred hhcCCCCC-HHHHH------------HHHHHHhhcCCHHHHHHHHHhCC--CCCcHH----HHHHHHHHHHHhCCHhHHH
Q 005802 521 ADYKISPE-TDHYA------------CMIDLYGRANQLEKAIEFMKSIP--TEEDAV----ILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 521 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~a~ 581 (676)
+. .|+ ...+. .+...+.+.|++++|.+.++++. .+.++. .+..+..++...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 54 344 33332 23667889999999999998877 333332 3445677889999999999
Q ss_pred HHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 582 EAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 582 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
..++++.+..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998864
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=2.5e-17 Score=164.00 Aligned_cols=321 Identities=13% Similarity=0.050 Sum_probs=217.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVY 304 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (676)
..+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~------ 75 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARL------ 75 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHH------
Confidence 345556666667777777777777766532 1234555666666666666666666666666553 12333444
Q ss_pred HhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCc------hhHHHHHHHHHHcCChHHHHHH
Q 005802 305 CKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNV------VVWTALFSGYVKAQNCEALFDL 378 (676)
Q Consensus 305 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~ 378 (676)
.+...+...|++++|...|+++.+.++ ..+..+.... .
T Consensus 76 -------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~---- 119 (359)
T 3ieg_A 76 -------------------------QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E---- 119 (359)
T ss_dssp -------------------------HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----
T ss_pred -------------------------HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----
Confidence 444445555555555588887765333 2232221100 0
Q ss_pred HHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 005802 379 LSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--- 455 (676)
Q Consensus 379 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 455 (676)
...+..+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 120 -------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 120 -------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred -------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 0112223344555566666666666655543 44566677777888888888888888877653
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHH------------HHHHHhhccCcHHHHHHHHHHchhh
Q 005802 456 RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFV------------AILSAFRHCGSVEMGEKYFNSMTAD 522 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~ 522 (676)
.+...+..+...+...|++++|...+++..+. .|+ ...+. .+...+...|++++|...++.+...
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35667888888888889999999988888874 343 23222 2355688899999999999999865
Q ss_pred cCCCCC-H----HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 523 YKISPE-T----DHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 523 ~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.|+ . ..+..+..++.+.|++++|++.++++. .+.++..+..+..++...|++++|...++++++.+|+++
T Consensus 264 ---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 264 ---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred ---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 344 2 335568889999999999999999887 555788999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhc
Q 005802 596 ARYVQLANVYAAE 608 (676)
Q Consensus 596 ~~~~~l~~~~~~~ 608 (676)
..+..|..++...
T Consensus 341 ~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 341 QIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.2e-17 Score=159.61 Aligned_cols=275 Identities=10% Similarity=0.032 Sum_probs=168.2
Q ss_pred HHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhc-Ch
Q 005802 333 VGYSLQGNMEEARRHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQA-AL 408 (676)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~ 408 (676)
..+...|++++|.++|+++.+ .+...+..++..+...|++++|...+++++... +.+...+..+...+...| ++
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhH
Confidence 333333444444455444432 233344555555566666666666666653321 223344555555555555 56
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
++|...++.+.+.. +.+...+..+...+...|++++|...|++.. +.+...+..+...+...|++++|.+.+++..
T Consensus 108 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 108 EHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666665555443 3345556666666777777777776666654 2234556667777777777777777777777
Q ss_pred HCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcC-------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 005802 486 EKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK-------ISPETDHYACMIDLYGRANQLEKAIEFMKSIP-- 556 (676)
Q Consensus 486 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 556 (676)
+.. +.+...+..+...+...|++++|...++++..... .+.....+..+..++.+.|++++|.+.++++.
T Consensus 187 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 187 SIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 642 23456666677777777777777777777654311 02225677777777777777777777777765
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH-HhcCCh
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY-AAEGNW 611 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 611 (676)
.+.+...+..+..++...|++++|...++++.+..|+++..+..++.++ ...|+.
T Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 4446667777777777777777777777777777777777777777776 344443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.8e-17 Score=159.23 Aligned_cols=266 Identities=13% Similarity=0.086 Sum_probs=229.2
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHH
Q 005802 354 KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTL 433 (676)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (676)
.+...+..+...+...|++++|+.+|++++... +.+...+..+...+...|++++|..++..+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 466678888999999999999999999985443 3344566667788889999999999999998865 5567888899
Q ss_pred HHHHHhcC-CHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 434 VDMYSKCG-NMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 434 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
...+...| ++++|...|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998763 356789999999999999999999999999853 22456677788999999999
Q ss_pred HHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--C---------CCcHHHHHHHHHHHHHhCCH
Q 005802 510 EMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--T---------EEDAVILGSFLNVCRLNRNA 577 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~---------~~~~~~~~~l~~~~~~~~~~ 577 (676)
++|...++++.. ..|+ ...+..+...+.+.|++++|...++++. . +.....+..+..++...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999974 3455 7889999999999999999999998876 1 34567899999999999999
Q ss_pred hHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 578 ELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++|...++++.+..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999998776543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.5e-17 Score=164.70 Aligned_cols=278 Identities=10% Similarity=-0.011 Sum_probs=206.2
Q ss_pred CCHHHHHH-HHhccCC--C-----CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhH
Q 005802 339 GNMEEARR-HFDSLTE--K-----NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHP 410 (676)
Q Consensus 339 ~~~~~a~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 410 (676)
|++++|.+ .+++... + +...+..+...+.+.|++++|+..|++++.. .+.+...+..+...+...|++++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHH
Confidence 44555555 5554432 1 2345666777777777777777777776332 23455566666777777777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHH---------------HHHHHHHcC
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNV---------------MIACYAHHG 472 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~ 472 (676)
|...++.+.+.. +.+..++..+...|...|++++|...++++.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777777664 44666777777777777888877777776542 2 2222211 233344889
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIE 550 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 550 (676)
++++|...++++.+..... +..++..+...+...|++++|...++++... .|+ ...+..+...+.+.|++++|++
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999853221 4778889999999999999999999999754 454 7889999999999999999999
Q ss_pred HHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-----------CccHHHHHHHHHhcCChhHHHHH
Q 005802 551 FMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-----------KARYVQLANVYAAEGNWAEMGRI 617 (676)
Q Consensus 551 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 617 (676)
.++++. .+.+...+..+..++...|++++|...++++++..|++ +..|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 999987 55678899999999999999999999999999998887 78899999999999999999998
Q ss_pred HHHHH
Q 005802 618 RKQMR 622 (676)
Q Consensus 618 ~~~~~ 622 (676)
+++..
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 87443
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.2e-15 Score=158.54 Aligned_cols=356 Identities=13% Similarity=0.080 Sum_probs=231.1
Q ss_pred cCChhHHHHHHhhCCCCCCeeeHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC----CCChH
Q 005802 205 EGEMEMALKTFWRQPELNDAVSWNTLISGYVQ----NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG----LRNVK 276 (676)
Q Consensus 205 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~ 276 (676)
.++.++|...|++.....+..++..|...|.. .+++++|+..|++..+.| +...+..+...+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 44555555554443323344444445455554 555555555555555433 22333333334433 44555
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC-CC
Q 005802 277 CAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE-KN 355 (676)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~ 355 (676)
+|...++...+.| ++..+..+...|.... ...++.++|.+.|++..+ .+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~---------------------------g~~~d~~~A~~~~~~a~~~~~ 182 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGD---------------------------GVTRDYVMAREWYSKAAEQGN 182 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---------------------------CCCCCHHHHHHHHHHHHHCCC
Confidence 5555555554443 2333333333343300 003445555566555433 34
Q ss_pred chhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh----hcChhHHHHHHHHHHHcCCCCCh
Q 005802 356 VVVWTALFSGYVK----AQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL----QAALHPGKEIHAYILRMGVQMDK 427 (676)
Q Consensus 356 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 427 (676)
...+..+...|.. .++.++|+.+|++. ...+ +...+..+...+.. .++.++|...++...+.+ +.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a-~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKS-ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 5556666666666 67777777777776 3332 34455555555554 667777777777776654 34
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHhHHH
Q 005802 428 KLISTLVDMYSK----CGNMTYAEIIFQNFIER-DLVLYNVMIACYAHH-----GHEEKAILLFEEMLEKGIKPDAVTFV 497 (676)
Q Consensus 428 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~ 497 (676)
..+..+...|.. .+++++|...|++..+. +...+..+...|... +++++|+.+|++..+.| +...+.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 555666667766 78899999988887644 566777788888877 89999999999998865 445666
Q ss_pred HHHHHhhccC---cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005802 498 AILSAFRHCG---SVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIPTEEDAVILGSFLNV 570 (676)
Q Consensus 498 ~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 570 (676)
.+...|...| ++++|.++|++..+. .+...+..|...|.. .+++++|++++++.....++..+..+...
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~ 408 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6777776656 889999999998764 357788888999988 89999999999998755678888888888
Q ss_pred HHH----hCCHhHHHHHHHHHHcccCC---CCccHHHHHHHHHh
Q 005802 571 CRL----NRNAELAGEAEEKLLRLEGN---NKARYVQLANVYAA 607 (676)
Q Consensus 571 ~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 607 (676)
|.. .+++++|...++++.+..|+ ++.....|+.++..
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 887 89999999999999999844 67777777776554
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=4.9e-17 Score=157.87 Aligned_cols=183 Identities=13% Similarity=0.123 Sum_probs=50.4
Q ss_pred hcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHH
Q 005802 204 REGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHS 283 (676)
Q Consensus 204 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (676)
+.|++++|.+.++++. .| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~~-~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4556666666666664 33 3677777777777777777777754 2466677777777777777777777666
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHH
Q 005802 284 WVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALF 363 (676)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 363 (676)
..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 65553 3446667777777777777777765553 255556777777777777777777777766 3677788
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHH
Q 005802 364 SGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK 412 (676)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 412 (676)
.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|.
T Consensus 156 ~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHH
Confidence 8888888888888888765 25566666666666666666663
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.3e-16 Score=152.14 Aligned_cols=346 Identities=12% Similarity=0.097 Sum_probs=137.5
Q ss_pred hccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 172 KCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMG 251 (676)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (676)
+.|++++|.++++++. ++.+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.+++..+
T Consensus 15 ~~~~ld~A~~fae~~~---~~~vWs~La~A~l~~g~~~eAIdsfik---a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4455666666666652 224666666666666777776666654 3455566666666666777777777555555
Q ss_pred hCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHH
Q 005802 252 ENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSM 331 (676)
Q Consensus 252 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 331 (676)
+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..+...|...|.++.|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 42 3445666666667777777766666653 255556777777777777777777777655 366677
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHH
Q 005802 332 IVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPG 411 (676)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 411 (676)
+..+.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|...... +...+.-...++..|.+.|.++++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHHHH
Confidence 777777777777777777763 666777777777777777777443322 222223344566667777777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHh--cCCHHHHHHHHhhcC---C-----CCcchHHHHHHHHHHcCChhHHHHHH
Q 005802 412 KEIHAYILRMGVQMDKKLISTLVDMYSK--CGNMTYAEIIFQNFI---E-----RDLVLYNVMIACYAHHGHEEKAILLF 481 (676)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~---~-----~~~~~~~~l~~~~~~~~~~~~A~~~~ 481 (676)
..+++...... +-...+|+-|..+|++ .+++.+..+.|..-. + .+...|..+.-.|...++++.|..
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~-- 303 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII-- 303 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH--
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH--
Confidence 77776666544 4455566666666654 445666666665433 1 256789999999999999998876
Q ss_pred HHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 482 EEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 482 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
.|.+. .|+......+.....+..+.+--.+...-.... .|. ..+-|+.++...=+...++.+|++..
T Consensus 304 -tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 304 -TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp -HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred -HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 44443 233333333333333444333222222222222 233 24555555555556666666665543
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.2e-16 Score=152.57 Aligned_cols=270 Identities=10% Similarity=0.016 Sum_probs=177.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcC
Q 005802 332 IVGYSLQGNMEEARRHFDSLTEKNV----VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAA 407 (676)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (676)
++-....|++..|+..++.....++ ...-.+..+|...|+++.|+..++. ..+|+..++..+...+...++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCc
Confidence 3445667888888888877665432 2344567788888888888875543 245566677777777777788
Q ss_pred hhHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005802 408 LHPGKEIHAYILRMGV-QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 408 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
.+.|...++.+...+. +.+...+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888887777654 33455566666777778888888887777 44566777777777777777778777777776
Q ss_pred CCCCCCHhHH---HHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcH
Q 005802 487 KGIKPDAVTF---VAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDA 561 (676)
Q Consensus 487 ~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 561 (676)
. .|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++. .+.++
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4 3543211 11223334457777777777777654 23346667777777777777777777777665 44466
Q ss_pred HHHHHHHHHHHHhCCHhH-HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 562 VILGSFLNVCRLNRNAEL-AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
.++..++..+...|+.++ +.++++++.+.+|+++.+. +...+.+.++++..
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 666666666666666654 4566677777777665432 34445555555543
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=9.8e-15 Score=153.22 Aligned_cols=409 Identities=11% Similarity=0.063 Sum_probs=264.9
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHhhCCC-CC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 005802 191 NLISKNAMVAACCREGEMEMALKTFWRQPE-LN-DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSA 268 (676)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 268 (676)
+...|..++. +.+.|++++|..+|+++.. .| +...|...+..+.+.|++++|..+|++.... .|+...+...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 4556666665 3556777777777766543 23 4556777777777777777888887777763 3565555544432
Q ss_pred H-hCCCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHHHhcCC-CCc---hhH
Q 005802 269 C-CGLRNVKCAKE----IHSWVLKN-GLIS-NPFVSSGIVDVYCK---------CENMNYAESMLLLKGV-RNS---FSI 328 (676)
Q Consensus 269 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~ 328 (676)
. ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 23455555544 55555543 4433 34556666555443 5677777777776654 211 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH-----HcC---CCCCCH--------
Q 005802 329 SSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFV-----TKE---GVVTDA-------- 392 (676)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~---~~~p~~-------- 392 (676)
..........|. ..+..++. .+.+++..|..++.+.. ... .++|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 111110000000 01111111 02244556666555420 111 134431
Q ss_pred hHHHHHHHHHHhh----cCh----hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 005802 393 LILVILLGACALQ----AAL----HPGKEIHAYILRMGVQMDKKLISTLVDMYSK-------CGNMT-------YAEIIF 450 (676)
Q Consensus 393 ~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~ 450 (676)
..|...+...... ++. ..+..+++.+.... +.++..+..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 2333333222111 122 35667788777753 5677888888888775 68887 899999
Q ss_pred hhcCC---C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHHchhhcC
Q 005802 451 QNFIE---R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGSVEMGEKYFNSMTADYK 524 (676)
Q Consensus 451 ~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 524 (676)
++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 98763 3 5668899999999999999999999999984 5653 47888888888899999999999999753
Q ss_pred CCCC-HHHHHHHHHH-HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc----
Q 005802 525 ISPE-TDHYACMIDL-YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA---- 596 (676)
Q Consensus 525 ~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---- 596 (676)
.|+ ...|...+.. +...|+.++|..+|++.. .+.++..|..++..+...|+.++|..+++++++..|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 343 3444333332 346899999999999887 4557889999999999999999999999999998777665
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 597 RYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.|...+......|+.+.+.++.+++.+.-+
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 777778888889999999999999887544
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=1.4e-14 Score=150.49 Aligned_cols=355 Identities=14% Similarity=0.083 Sum_probs=262.8
Q ss_pred CeeeHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC----CCChHHHHHHHHHHHHhCCCCch
Q 005802 223 DAVSWNTLISGYVQ----NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG----LRNVKCAKEIHSWVLKNGLISNP 294 (676)
Q Consensus 223 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 294 (676)
+..++..+...|.. .+++++|+..|+...+.| +...+..+-..+.. .++.++|...++...+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444455555554 556666666666655543 23344444444444 555666666665555543 23
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCC-CchhHHHHHHHHHH----c
Q 005802 295 FVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEK-NVVVWTALFSGYVK----A 369 (676)
Q Consensus 295 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~ 369 (676)
..+..|...|.... ...+++++|.+.|++..+. ++..+..+...|.. .
T Consensus 112 ~a~~~Lg~~y~~g~---------------------------g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 112 QAQQNLGVMYHEGN---------------------------GVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp HHHHHHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHcCC---------------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 33333333443300 0045566666777766543 45677778888877 7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh----hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC
Q 005802 370 QNCEALFDLLSEFVTKEGVVTDALILVILLGACAL----QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK----CG 441 (676)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 441 (676)
++.++|+..|++. ...+ +...+..+...+.. .++.++|...++...+.+ ++..+..+...|.. .+
T Consensus 165 ~d~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 165 RDYVMAREWYSKA-AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 8999999999998 4443 56777777777777 899999999999998865 56677788888876 78
Q ss_pred CHHHHHHHHhhcCC-CCcchHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc-----CcHHH
Q 005802 442 NMTYAEIIFQNFIE-RDLVLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHC-----GSVEM 511 (676)
Q Consensus 442 ~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~ 511 (676)
++++|...|++..+ .+...+..+...|.. .++.++|+++|++..+.| +...+..+...|... +++++
T Consensus 238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 99999999998764 466677788888888 899999999999998765 455666677777776 89999
Q ss_pred HHHHHHHchhhcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHH
Q 005802 512 GEKYFNSMTADYKISPETDHYACMIDLYGRAN---QLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAE 584 (676)
Q Consensus 512 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 584 (676)
|..++++..+. + +...+..+...|.+.| +.++|++++++.....++..+..+...|.. .+++++|...+
T Consensus 315 A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 315 AISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99999998764 2 4567778888888766 889999999998855788899999999988 89999999999
Q ss_pred HHHHcccCCCCccHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 005802 585 EKLLRLEGNNKARYVQLANVYAA----EGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 585 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 626 (676)
+++.+.. ++..+..|+.+|.. .+++++|...+++..+.++
T Consensus 391 ~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 391 RKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9998763 57889999999998 8999999999999998774
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.1e-15 Score=145.84 Aligned_cols=249 Identities=8% Similarity=0.058 Sum_probs=187.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCH--hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005802 363 FSGYVKAQNCEALFDLLSEFVTKEGVVTDA--LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC 440 (676)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (676)
+......|++..|+..++.. ....|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~---~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRV---KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHS---CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhc---ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 34456678888888888764 2334443 3445667788888888888865543 2356677778888888888
Q ss_pred CCHHHHHHHHhhcC----CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 005802 441 GNMTYAEIIFQNFI----ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKY 515 (676)
Q Consensus 441 g~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 515 (676)
|+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88999988888763 24 455666777888889999999988876 35677788888888889999999999
Q ss_pred HHHchhhcCCCCCHHH---HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 516 FNSMTADYKISPETDH---YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 516 ~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
++.+.+. .|+... ...++..+...|++++|..+|+++. .++++..+..+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9888754 355321 1233444555688999999988887 5667888888888889999999999999999988
Q ss_pred cCCCCccHHHHHHHHHhcCChhH-HHHHHHHHHhCCCc
Q 005802 591 EGNNKARYVQLANVYAAEGNWAE-MGRIRKQMRGMKGN 627 (676)
Q Consensus 591 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 627 (676)
+|+++.++..++.++...|++++ +.++++++.+..+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 99998889999988888998876 56788888776654
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.2e-16 Score=159.67 Aligned_cols=277 Identities=10% Similarity=0.015 Sum_probs=206.0
Q ss_pred CHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHH-HHHHHHHcCCCCC--CHhHHHHHHHHHHhhcChhHHHHHHH
Q 005802 340 NMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFD-LLSEFVTKEGVVT--DALILVILLGACALQAALHPGKEIHA 416 (676)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 416 (676)
.++.+...|+.+...+.. ++...|++++|+. .+++.+......| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555443322 3344578999998 8876522222222 35667888889999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005802 417 YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA 493 (676)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 493 (676)
.+.+.. +.+...+..+..+|...|++++|...|+++. +.+..++..+...+...|++++|...++++.... |+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCc
Confidence 999875 5677889999999999999999999999875 3467789999999999999999999999999853 432
Q ss_pred h-HHHH---------------HHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 494 V-TFVA---------------ILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 494 ~-~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
. .+.. .+..+...|++++|...++++.......++..++..+...+.+.|++++|++.++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2211 2333448899999999999998653222247889999999999999999999999987
Q ss_pred -CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 557 -TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 557 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.+.++..+..++.++...|++++|+..++++++..|+++..+..++.+|.+.|++++|...++++.+..+
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5557889999999999999999999999999999999999999999999999999999999999987543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.2e-16 Score=159.42 Aligned_cols=231 Identities=11% Similarity=0.005 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHH
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYA 469 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 469 (676)
..+..+...+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|...|+++. +.+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 335555555666666666666666666554 4456677778888888888888888887765 335668888888999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCH-----------hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDA-----------VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 538 (676)
..|++++|...++++.+. .|+. ..+..+...+...|++++|..+++++.....-.++...+..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999998873 3332 223345778899999999999999998763222258899999999
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 539 YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
|.+.|++++|++.++++. .+.+..+|..++.+|...|++++|+..++++++..|+++..+..++.+|...|++++|..
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999987 566788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 005802 617 IRKQMRGMKG 626 (676)
Q Consensus 617 ~~~~~~~~~~ 626 (676)
.++++.+..+
T Consensus 303 ~~~~al~~~~ 312 (365)
T 4eqf_A 303 NFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhCc
Confidence 9999987544
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=2.1e-16 Score=157.73 Aligned_cols=259 Identities=12% Similarity=-0.034 Sum_probs=199.0
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005802 356 VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVD 435 (676)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 435 (676)
...|..+...+.+.|++++|+..|++++... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4456677777777777777777777764332 3456667777777777777777777777777654 445677778888
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-C----------cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHhHHHHHHH
Q 005802 436 MYSKCGNMTYAEIIFQNFIE--R-D----------LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIK-PDAVTFVAILS 501 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 501 (676)
+|...|++++|...|+++.+ | + ...+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888877652 1 1 223345578889999999999999999985322 15788899999
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
.+...|++++|...++++.+. .|+ ..+|..+..+|.+.|++++|++.++++. .+.+..++..+..+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999764 344 8899999999999999999999999987 4556889999999999999999
Q ss_pred HHHHHHHHHHcccCC------------CCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 579 LAGEAEEKLLRLEGN------------NKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+|...+++++++.|+ +...+..|+.++...|+.+.|.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999776 367799999999999999999887764
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.8e-14 Score=151.12 Aligned_cols=214 Identities=9% Similarity=0.052 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh-------hcChh-------HHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005802 373 EALFDLLSEFVTKEGVVTDALILVILLGACAL-------QAALH-------PGKEIHAYILRMGVQMDKKLISTLVDMYS 438 (676)
Q Consensus 373 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (676)
.+++.+|++.+.. .+.+...|......+.. .|+++ +|..+++...+.-.+.+...+..++..+.
T Consensus 255 ~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3677788877443 23345566666666554 67876 78888888876334556888889999999
Q ss_pred hcCCHHHHHHHHhhcC--CC-Cc-chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHH-hhccCcHHHH
Q 005802 439 KCGNMTYAEIIFQNFI--ER-DL-VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSA-FRHCGSVEMG 512 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a 512 (676)
+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|.++|++..+. .|+ ...|...... +...|++++|
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999875 33 32 47888888889999999999999999875 333 3333322222 3358999999
Q ss_pred HHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-c----HHHHHHHHHHHHHhCCHhHHHHHHH
Q 005802 513 EKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-D----AVILGSFLNVCRLNRNAELAGEAEE 585 (676)
Q Consensus 513 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~ 585 (676)
..+|+...+. .|+ ...|..++..+.+.|+.++|..+|+++. ..| + ...|...+......|+.+.+..+.+
T Consensus 411 ~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 411 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998865 354 8889999999999999999999999987 222 2 3378888888889999999999999
Q ss_pred HHHcccCC
Q 005802 586 KLLRLEGN 593 (676)
Q Consensus 586 ~~~~~~p~ 593 (676)
++.+..|+
T Consensus 488 r~~~~~p~ 495 (530)
T 2ooe_A 488 RRFTAFRE 495 (530)
T ss_dssp HHHHHTHH
T ss_pred HHHHHCch
Confidence 99999885
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=4e-16 Score=153.02 Aligned_cols=258 Identities=9% Similarity=-0.055 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMY 437 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (676)
.+..+...+...|++++|+..|++++.. .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 4445555556666666666666665322 12244455555555666666666666666665543 34555666666677
Q ss_pred HhcCCHHHHHHHHhhcCC--C-CcchHHHH--------------HH-HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 005802 438 SKCGNMTYAEIIFQNFIE--R-DLVLYNVM--------------IA-CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI 499 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (676)
...|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777776666542 1 22222222 22 3667789999999999998853 3367788889
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCC
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRN 576 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 576 (676)
...+...|++++|...++++... .|+ ...+..+...+...|++++|.+.++++. .+.+...+..+..++...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999754 344 7889999999999999999999999887 45578889999999999999
Q ss_pred HhHHHHHHHHHHcccCC------------CCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 577 AELAGEAEEKLLRLEGN------------NKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 577 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+++|...++++.+..|. ++..+..++.+|...|++++|..++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999998 68899999999999999999999987543
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=4e-15 Score=154.15 Aligned_cols=370 Identities=12% Similarity=0.017 Sum_probs=200.9
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhC---C-
Q 005802 223 DAVSWNTLISGYVQNGDAEEGLKLFVRMGEN-----G--VRW-NEHTFASALSACCGLRNVKCAKEIHSWVLKNG---L- 290 (676)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~- 290 (676)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...++++.+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556888888889999999999999886541 1 122 34577788888888888888888888775531 0
Q ss_pred --C-CchhHHHHHHHHHHhc--CChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCC-CchhHHHHHH
Q 005802 291 --I-SNPFVSSGIVDVYCKC--ENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEK-NVVVWTALFS 364 (676)
Q Consensus 291 --~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~ 364 (676)
. ....++..+..++... +++++|...|++...- .| ++..+..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----------------------------~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----------------------------KPKNPEFTSGLAI 180 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----------------------------STTCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----------------------------CCCCHHHHHHHHH
Confidence 1 1223444444344333 3455666555443320 12 2222222222
Q ss_pred H---HHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHH----hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 005802 365 G---YVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACA----LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMY 437 (676)
Q Consensus 365 ~---~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (676)
. +...++.++|++.+++.+... +.+...+..+...+. ..++.++|...++...... +.+...+..+...|
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~ 257 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFY 257 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHH
Confidence 2 223344455555555442221 112222222222222 2234455555555554443 33444555555555
Q ss_pred HhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHH-------------------cCChhHHHHHHHHHHHCCCCCCHhH
Q 005802 438 SKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAH-------------------HGHEEKAILLFEEMLEKGIKPDAVT 495 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~-------------------~~~~~~A~~~~~~m~~~g~~p~~~~ 495 (676)
...|++++|...+++.. .| +..++..+..+|.. .+..+.|...+++..+.. +.+..+
T Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 336 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRV 336 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCC
T ss_pred HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhh
Confidence 55666666655555543 12 23334433333321 234677888888877743 234567
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH--HHHHHHHH-HHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPET--DHYACMID-LYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVC 571 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 571 (676)
+..+...+...|++++|...|++.... ...|.. ..+..+.. .+...|+.++|+..+++.. ..|+.....
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~------ 409 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE------ 409 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH------
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH------
Confidence 788888999999999999999988754 222221 12333333 2357789999999998876 555543332
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEE
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWV 635 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 635 (676)
+....+..++++.++.+|.++.+|..||.+|...|++++|++.+++..+.+...+...+|+
T Consensus 410 ---~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 ---KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2234566778888889999999999999999999999999999999998877665555554
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=3e-15 Score=136.47 Aligned_cols=193 Identities=13% Similarity=0.058 Sum_probs=157.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHH
Q 005802 424 QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAI 499 (676)
Q Consensus 424 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l 499 (676)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677788888889999999999999988753 35668888999999999999999999999884 45 46678888
Q ss_pred HHHhhcc-----------CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHH
Q 005802 500 LSAFRHC-----------GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILG 565 (676)
Q Consensus 500 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 565 (676)
..++... |++++|...+++..+. .|+ ...+..+..++...|++++|+..++++. . .++..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 8888888 9999999999999854 566 7889999999999999999999999987 5 7888999
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
.+..++...|++++|+..++++++.+|+++..+..++.++...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998653
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=165.91 Aligned_cols=147 Identities=10% Similarity=0.149 Sum_probs=128.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHhccCC-------CCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHH
Q 005802 57 FSWNTIISACIKSHDLKQARSLFDSSP-------HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVT 129 (676)
Q Consensus 57 ~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~ 129 (676)
.+||++|.+||+.|++++|.++|++|. .||++|||+||++||+.|+.+ +|.++|++|.+ .|+.||..||+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~-eA~~Lf~eM~~--~G~~PDvvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK-ELVYVLFMVKD--AGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHH--TTCCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHH-HHHHHHHHHHH--cCCCCcHHHHH
Confidence 489999999999999999999997653 699999999999999999999 99999999999 99999999999
Q ss_pred HHHHHHHccCCc-HHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCC----CchhhHHHHHHHHHh
Q 005802 130 STLNLCVKLLNV-GFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEE----VNLISKNAMVAACCR 204 (676)
Q Consensus 130 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~ 204 (676)
++|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++...++...+..+ +...+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999999888887777777776555442 223445566677776
Q ss_pred cC
Q 005802 205 EG 206 (676)
Q Consensus 205 ~g 206 (676)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.5e-14 Score=136.33 Aligned_cols=212 Identities=14% Similarity=0.062 Sum_probs=160.1
Q ss_pred HHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C----C----cchHHHHHHHHH
Q 005802 400 GACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R----D----LVLYNVMIACYA 469 (676)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~~~~~ 469 (676)
..+...|++++|...+..+.+.. .+...+..+..+|...|++++|...+++..+ | + ...|..+...+.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 33334444444444444444433 3444555555555555666666555555431 1 1 456777888888
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 548 (676)
..|++++|...|++..+. .|+.. .+...|++++|...++.+.. ..|+ ...+..+...+...|++++|
T Consensus 91 ~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999998883 45533 35566889999999998874 3455 77888899999999999999
Q ss_pred HHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 549 IEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 549 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
++.++++. .+.++..+..+..++...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999887 556788899999999999999999999999999999999999999999999999999999999987654
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=9.4e-14 Score=143.79 Aligned_cols=383 Identities=14% Similarity=0.049 Sum_probs=225.0
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-----------CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhC----
Q 005802 189 EVNLISKNAMVAACCREGEMEMALKTFWRQPE-----------LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGEN---- 253 (676)
Q Consensus 189 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 253 (676)
+.....|+.+...+...|+.++|++.|++... .....+|+.+..+|...|++++|...+++....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 34456789999999999999999998865321 234567999999999999999999999987642
Q ss_pred -C-CCC-cHhHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhcCChHHHHHHHHhcCC---
Q 005802 254 -G-VRW-NEHTFASALSACC--GLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDV---YCKCENMNYAESMLLLKGV--- 322 (676)
Q Consensus 254 -g-~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~--- 322 (676)
+ ..+ ...++.....++. ..+++++|...|+...+... .++..+..+..+ +...++.+.|.+.+++...
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 112 2345555544443 45679999999999998752 344455555444 4456777788877765443
Q ss_pred CCchhHHHHHHHHH----hcCCHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHH
Q 005802 323 RNSFSISSMIVGYS----LQGNMEEARRHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALIL 395 (676)
Q Consensus 323 ~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 395 (676)
.+...+..+...+. ..|+.++|.+.+++... .+..++..+...|...|++++|+..+++.+... +.+...+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHH
Confidence 23444544444433 34567778888876543 345567778888888888888888888864332 2233344
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcC
Q 005802 396 VILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHG 472 (676)
Q Consensus 396 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 472 (676)
..+...+...+.... ... . ..........+.++.|...++... ..+..++..+...+...|
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 444333322111000 000 0 000011111233566777777654 346678999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHh--HHHHHHH-HhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAV--TFVAILS-AFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAI 549 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 549 (676)
++++|++.|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+....... ...+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHH
Confidence 9999999999999854333221 2222222 2457799999999999887 445664332222 22334
Q ss_pred HHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHH
Q 005802 550 EFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLA 602 (676)
Q Consensus 550 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 602 (676)
+++++.. .+.++.+|..++.++...|++++|+..|+++++..|.+|.....+|
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4444443 4667889999999999999999999999999999998887776654
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=3.1e-14 Score=139.45 Aligned_cols=231 Identities=10% Similarity=-0.007 Sum_probs=195.6
Q ss_pred CHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHH
Q 005802 391 DALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIAC 467 (676)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 467 (676)
+...+......+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 33456677778889999999999999998875 5577888889999999999999999999875 3466788899999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHH--------------HH-HhhccCcHHHHHHHHHHchhhcCCCCCHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAI--------------LS-AFRHCGSVEMGEKYFNSMTADYKISPETDH 531 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 531 (676)
+...|++++|.+.++++.+. .|+.. .+..+ .. .+...|++++|...++++... .+.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 99999999999999999985 34332 33222 22 378889999999999999764 1235888
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
+..+...+.+.|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|+++..+..++.+|...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887 55578889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 005802 610 NWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~~ 626 (676)
++++|.+.++++.+..+
T Consensus 255 ~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 99999999999987544
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=3.9e-16 Score=163.76 Aligned_cols=126 Identities=13% Similarity=0.213 Sum_probs=95.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhc-------CCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005802 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNF-------IERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFV 497 (676)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 497 (676)
.-..+|++||++||+.|++++|.++|..| ..||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34457777777777777777777777554 25788888888888888888888888888888888888888888
Q ss_pred HHHHHhhccCc-HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005802 498 AILSAFRHCGS-VEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 498 ~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...++
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 88888888876 46788888888777 8888888888887766555444333333
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.3e-14 Score=131.94 Aligned_cols=234 Identities=11% Similarity=-0.011 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC--CC----hhHHH
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ--MD----KKLIS 431 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 431 (676)
.|..+...+...|++++|+..|++.+... ++...+..+...+...|++++|...+..+.+.... ++ ...+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 45666777777788888888887774433 66667777777777788888888777776664311 11 56778
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHH
Q 005802 432 TLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVE 510 (676)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~ 510 (676)
.+...|...|++++|...|++....+.. ...+...|++++|...++++... .| +...+..+...+...|+++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence 8888889999999999988877632211 24566778899999999999884 34 3567778888899999999
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 511 MGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
+|...++++... .+.+...+..+..++.+.|++++|++.++++. .+.++..+..+..++...|++++|...++++.
T Consensus 157 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999764 12347889999999999999999999999887 55568889999999999999999999999999
Q ss_pred ccc------CCCCccHHHHHH
Q 005802 589 RLE------GNNKARYVQLAN 603 (676)
Q Consensus 589 ~~~------p~~~~~~~~l~~ 603 (676)
+.. |.+...+..+..
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHH
T ss_pred HhChhhcCCCchHHHHHHHHH
Confidence 998 777666665544
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1.3e-13 Score=131.33 Aligned_cols=241 Identities=8% Similarity=-0.071 Sum_probs=181.9
Q ss_pred cCChHHHHHHHHHHHHcCCCC--CCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 005802 369 AQNCEALFDLLSEFVTKEGVV--TDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYA 446 (676)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 446 (676)
.|++++|+..|++++...... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 466777777777773332111 134556667777777788888888887777764 45677888888899999999999
Q ss_pred HHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhc
Q 005802 447 EIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADY 523 (676)
Q Consensus 447 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 523 (676)
...|++.. +.+...+..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 99988775 336778899999999999999999999999984 466555555555667779999999999887664
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 524 KISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 524 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.+++...+ .++..+...++.++|++.++++. ..| +...+..++.++...|++++|...++++++.+|++.
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 249 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF-- 249 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC--
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH--
Confidence 23333444 47777888889999999998887 222 256788889999999999999999999999998764
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~ 618 (676)
...+.++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 34477888999999998876
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=4.1e-13 Score=136.95 Aligned_cols=375 Identities=11% Similarity=0.043 Sum_probs=207.0
Q ss_pred HHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCCh---hHHHHHHhhCCCCCCeeeHHHHHHHHHhcC-----C
Q 005802 168 DMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEM---EMALKTFWRQPELNDAVSWNTLISGYVQNG-----D 239 (676)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 239 (676)
..+.+.|++++|.++|++.....+...+..+...+...|+. ++|+..|++.... +...+..+...+...+ +
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcC
Confidence 33344444444444444433322333333344444444555 5666666555523 5556666665444444 5
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 240 AEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNV---KCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 240 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
+++|+..|++..+.|... .+..+...|...+.. ..+.+.+......|. +.....+...|...+.++.+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~-- 161 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL-- 161 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH--
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH--
Confidence 677777777777755422 333344444333322 223334444433332 333444444444444433332
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCCHh
Q 005802 317 LLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQ---NCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
+++..+++.....++..+..|...|...| +.++|+..|++.
T Consensus 162 -------------------------~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a----------- 205 (452)
T 3e4b_A 162 -------------------------DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG----------- 205 (452)
T ss_dssp -------------------------HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred -------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH-----------
Confidence 33335555555555556666666666666 666666666664
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHhhcCCCCcchHHHHHHH-H
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC----GNMTYAEIIFQNFIERDLVLYNVMIAC-Y 468 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~ 468 (676)
.+.| +++...+..|..+|... +++++|...|+.....+...+..|... +
T Consensus 206 -------------------------a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 206 -------------------------VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLY 259 (452)
T ss_dssp -------------------------HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred -------------------------HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2222 22333233444444333 567777777776662255566666666 3
Q ss_pred --HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC-----cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh
Q 005802 469 --AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG-----SVEMGEKYFNSMTADYKISPETDHYACMIDLYGR 541 (676)
Q Consensus 469 --~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 541 (676)
...+++++|+++|++..+.| +...+..|...|. .| ++++|..+|++.. .-+...+..|...|..
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRR 330 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHC
Confidence 45789999999999988876 5566666666666 45 9999999998875 2356777778877776
Q ss_pred ----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHH--HhcCCh
Q 005802 542 ----ANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVY--AAEGNW 611 (676)
Q Consensus 542 ----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~ 611 (676)
..++++|.++|++.....++.....+...|.. .++.++|...++++.+..+. .....+..+. ...++.
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~ 408 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQR 408 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHH
Confidence 34899999999988766667777777777763 45899999999999887554 3334444443 234567
Q ss_pred hHHHHHHHHHHhC
Q 005802 612 AEMGRIRKQMRGM 624 (676)
Q Consensus 612 ~~A~~~~~~~~~~ 624 (676)
++|..+.++.++.
T Consensus 409 ~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 409 AEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7788887776653
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2.9e-13 Score=126.88 Aligned_cols=198 Identities=10% Similarity=0.032 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF 503 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 503 (676)
...+..+...+...|++++|...|+++. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455666677777777777777777654 2355677788888888899999999998888753 23567778888888
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 580 (676)
...|++++|..+++++... +..|+ ...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999988752 35564 6778888889999999999999998876 445677888888899999999999
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
...++++.+..|.++..+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999998888899999999999999999999999887654
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=4.7e-13 Score=122.95 Aligned_cols=199 Identities=12% Similarity=-0.033 Sum_probs=162.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
+...+..+...+...|++++|...|+++. +.+...|..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44566677777778888888888877664 2356678888888889999999999999888753 3356778888888
Q ss_pred hhcc-CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 503 FRHC-GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 503 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
+... |++++|...++.+.. .+..|+ ...+..+..++...|++++|++.++++. .+.+...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8999 999999999998876 234455 6778888999999999999999998877 4456778888888999999999
Q ss_pred HHHHHHHHHHcccC-CCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 579 LAGEAEEKLLRLEG-NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 579 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+|...++++.+..| .++..+..++.++...|+.++|..+++.+.+..+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 99999999999999 8888888888899999999999999998876544
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=7.1e-13 Score=125.89 Aligned_cols=222 Identities=10% Similarity=0.047 Sum_probs=163.0
Q ss_pred HHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcc----hHHHHHHHHHHcCCh
Q 005802 401 ACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RDLV----LYNVMIACYAHHGHE 474 (676)
Q Consensus 401 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~ 474 (676)
.+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...+++... ++.. .|..+...+...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 3444444444444444444432 23444566666677777777777777766543 2222 377888888999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 005802 475 EKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMK 553 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 553 (676)
++|++.|++..+.. +.+...+..+...+...|++++|...+++... ..|+ ...+..+...+...+++++|++.++
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988843 23457888888899999999999999998874 3555 7777777734444569999999999
Q ss_pred hCC--CCCcHHHHHHHHHHHHHhCC---HhHHHHHHHHHHccc---CCC-----CccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 554 SIP--TEEDAVILGSFLNVCRLNRN---AELAGEAEEKLLRLE---GNN-----KARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 554 ~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
++. .+.+...+..+..++...++ +++|...++++.+.. |+. ...|..++.+|...|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 887 44557778888888888888 888999999998884 432 25788899999999999999999999
Q ss_pred HHhCCCc
Q 005802 621 MRGMKGN 627 (676)
Q Consensus 621 ~~~~~~~ 627 (676)
+.+..+.
T Consensus 247 al~~~p~ 253 (272)
T 3u4t_A 247 ILALDPT 253 (272)
T ss_dssp HHHHCTT
T ss_pred HHhcCcc
Confidence 9876554
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=2.4e-13 Score=129.12 Aligned_cols=175 Identities=15% Similarity=0.109 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhc
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRH 505 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 505 (676)
+..+...|...|++++|...|++.. +.+..+|..+...+...|++++|++.|++..+. .| +...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHH
Confidence 4555556666666666666665543 224456666777777777777777777776654 33 34455555523334
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC---HHHHHHHHHhCC----CCCcH------HHHHHHHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ---LEKAIEFMKSIP----TEEDA------VILGSFLNVC 571 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~~------~~~~~l~~~~ 571 (676)
.+++++|...++++.+. .|+ ...+..+..++...|+ +++|...++++. ..|++ ..+..+...|
T Consensus 155 ~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 45888888888877643 344 6666677777777776 666777666655 12332 4677788889
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
...|++++|...++++++.+|+++.....+..+....+
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999999999988888877765544
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=2.6e-12 Score=122.02 Aligned_cols=191 Identities=14% Similarity=0.058 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCcchHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 005802 428 KLISTLVDMYSK----CGNMTYAEIIFQNFIE-RDLVLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFVA 498 (676)
Q Consensus 428 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 498 (676)
..+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 115 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHH
Confidence 344445555555 6666666666665542 245566667777777 788888888888887764 5667777
Q ss_pred HHHHhhc----cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005802 499 ILSAFRH----CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIPTEEDAVILGSFLNV 570 (676)
Q Consensus 499 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 570 (676)
+...|.. .+++++|...+++..+. + +...+..+...|.. .+++++|++.+++.....++..+..+...
T Consensus 116 lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 191 (273)
T 1ouv_A 116 LGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777 78888888888887654 2 45666777777777 78888888888877644566777778888
Q ss_pred HHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCc
Q 005802 571 CRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA----EGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 571 ~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 627 (676)
+.. .+++++|...++++.+..| +..+..|+.+|.. .|++++|.+.+++..+.++.
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 888 8888888888888888755 5678888888888 88899999998888877654
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.6e-13 Score=127.95 Aligned_cols=200 Identities=13% Similarity=0.093 Sum_probs=145.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005802 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 501 (676)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3445566667777788888888887777643 355677778888888899999999988888753 335677778888
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 579 (676)
.+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++. .+.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 888889999999999888754 12347778888888899999999999988876 45567788888888899999999
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
|+..++++.+..|.++..+..++.+|...|++++|.+.++++.+..+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 999999999888888888999999999999999999999988775543
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.9e-12 Score=131.98 Aligned_cols=272 Identities=11% Similarity=0.060 Sum_probs=192.4
Q ss_pred CHHHHHHHHhccCCC-CchhHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHH
Q 005802 340 NMEEARRHFDSLTEK-NVVVWTALFSGYVKAQNCE---ALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIH 415 (676)
Q Consensus 340 ~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 415 (676)
+.++|...|++..++ +...+..|...|...+... ++...+... ...| +......+...+...+.++.+....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a-~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQW-QAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHH-HHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 455555666665543 3446666777776655433 344444443 2222 2334455555666666555554443
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcCCC---CcchHHHHHHHHHHc----CChhHHHHHHHHHH
Q 005802 416 AYILRMGVQMDKKLISTLVDMYSKCG---NMTYAEIIFQNFIER---DLVLYNVMIACYAHH----GHEEKAILLFEEML 485 (676)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~ 485 (676)
....+.-...++..+..|..+|...| +.++|...|++..+. +...+..+...|... +++++|+.+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 33333333445558888999999999 899999999987533 333336677777554 79999999999987
Q ss_pred HCCCCCCHhHHHHHHHH-h--hccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcC-----CHHHHHHHHHhCCC
Q 005802 486 EKGIKPDAVTFVAILSA-F--RHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRAN-----QLEKAIEFMKSIPT 557 (676)
Q Consensus 486 ~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 557 (676)
.| +...+..|... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|+++|++..
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 44555555555 3 5689999999999998754 3 5777778888887 55 9999999999999
Q ss_pred CCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCc
Q 005802 558 EEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA----EGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 627 (676)
+.++.....+...|.. ..++++|...++++.+ +.++.....|+.+|.. ..+.++|...++...+.|..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 7788888888887766 4499999999999986 4567889999999985 46899999999999887763
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=5.3e-13 Score=118.23 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=143.4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYAC 534 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 534 (676)
+...|..+...+...|++++|++.|++.++. .| +...+..+..++...|++++|...++..... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4557888888899999999999999998874 45 4677888888999999999999999988754 344 777778
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChh
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWA 612 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 612 (676)
+...+...+++++|.+.+.+.. .+.+...+..+..++...|++++|+..++++++.+|.++..+..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888999999999999998877 55677888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCc
Q 005802 613 EMGRIRKQMRGMKGN 627 (676)
Q Consensus 613 ~A~~~~~~~~~~~~~ 627 (676)
+|.+.+++..+..++
T Consensus 159 ~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 159 EAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhCCcc
Confidence 999999999876553
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=3.6e-13 Score=125.46 Aligned_cols=181 Identities=12% Similarity=0.069 Sum_probs=138.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
+...+..+...+...|++++|...++++. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455555556666666666666666543 2345677778888888899999999999888753 3356778888888
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 580 (676)
+...|++++|...++++... .+.+...+..+...+.+.|++++|.+.++++. .+.+...+..+..++...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 99999999999999998754 12347788899999999999999999998877 455678899999999999999999
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
...++++.+..|+++..+..++.+....|
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999888877766654443
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=8.1e-13 Score=130.32 Aligned_cols=216 Identities=3% Similarity=0.003 Sum_probs=166.0
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGN-MTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAIL 479 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 479 (676)
..|++++|...++.+++.. +.+...+..+..++...|+ +++|+..|+++. ..+...|..+..++...|++++|+.
T Consensus 109 ~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444444444433 4455666777777777775 888888877765 2356688888888899999999999
Q ss_pred HHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhh-cCCHHHH-----HHH
Q 005802 480 LFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGR-ANQLEKA-----IEF 551 (676)
Q Consensus 480 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A-----~~~ 551 (676)
.|+++++. .| +...|..+..++...|++++|+..++++.+. .|+ ...|+.+..++.+ .|..++| ++.
T Consensus 188 ~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 188 FIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 99999884 34 5678888888899999999999999999854 555 7888899999988 6665777 477
Q ss_pred HHhCC--CCCcHHHHHHHHHHHHHhC--CHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC--------C-hhHHHHHH
Q 005802 552 MKSIP--TEEDAVILGSFLNVCRLNR--NAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG--------N-WAEMGRIR 618 (676)
Q Consensus 552 ~~~~~--~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~ 618 (676)
++++. .+.+...|..+..++...| ++++|+..++++ +..|+++..+..|+.+|.+.| + +++|++++
T Consensus 263 ~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 263 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 77776 4557788988888888887 689999999998 889999999999999999874 3 58999999
Q ss_pred HHH-HhCCC
Q 005802 619 KQM-RGMKG 626 (676)
Q Consensus 619 ~~~-~~~~~ 626 (676)
+++ .+..+
T Consensus 342 ~~l~~~~DP 350 (382)
T 2h6f_A 342 EILAKEKDT 350 (382)
T ss_dssp HHHHHTTCG
T ss_pred HHHHHHhCc
Confidence 998 65443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=3e-12 Score=119.98 Aligned_cols=171 Identities=12% Similarity=0.071 Sum_probs=128.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILS 501 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 501 (676)
+...+..+...|...|++++|.+.++++. ..+...+..+...+...|++++|.+.++++.+.+..|+ ...+..+..
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 44455556666666666666666666543 22455677777888888888888888888877334453 456777778
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
.+...|++++|...++++... .|+ ...+..++..+...|++++|.+.++++. .+.+...+..+...+...|+++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHH
Confidence 888889999999999888754 343 7788888899999999999999988876 4456677888888889999999
Q ss_pred HHHHHHHHHHcccCCCCccHH
Q 005802 579 LAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~~~ 599 (676)
+|...++++.+..|+++....
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999998765543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=4.7e-12 Score=116.15 Aligned_cols=200 Identities=15% Similarity=0.053 Sum_probs=144.4
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHc-CC
Q 005802 398 LLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHH-GH 473 (676)
Q Consensus 398 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~~ 473 (676)
+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...+++.. ..+..++..+...+... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 3333344444444444444444332 2334555666666666777777776666554 23555777788888888 89
Q ss_pred hhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHH
Q 005802 474 EEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
+++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .|+ ...+..++..+.+.|++++|.+.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999988887433444 566777888889999999999999988754 344 77888899999999999999999
Q ss_pred HHhCC--CC-CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHH
Q 005802 552 MKSIP--TE-EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 552 ~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
++++. .+ .+...+..+...+...|+.+.+..+++.+.+..|+++.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 98876 44 5677777777788899999999999999998999887665544
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=2e-12 Score=117.61 Aligned_cols=205 Identities=14% Similarity=0.057 Sum_probs=98.1
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 005802 355 NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLV 434 (676)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 434 (676)
+...+..+...+.+.|++++|+..|++.+. --+.+...+..+...+...|++++|...++.+.+.. |.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344566666666677777777777766522 122334444555555555555555555555555543 23334444444
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHH
Q 005802 435 DMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 513 (676)
.++...+. . ... .+...|++++|+..|++..+. .|+ ...+..+..++...|++++|.
T Consensus 81 ~~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 81 EAYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHH
Confidence 44444400 0 000 000005566666666555552 232 444555555555666666666
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
..|++..+. . .+...+..+..+|...|++++|+..++++. .+.++..+..+..++...|++++|+..+++.
T Consensus 139 ~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 139 ASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666665543 2 445555556666666666666666665554 3334555555555666666666666555544
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=2.7e-12 Score=126.52 Aligned_cols=244 Identities=7% Similarity=0.048 Sum_probs=191.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcC-hhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAA-LHPGKEIHAYILRMGVQMDKKLISTLVD 435 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 435 (676)
..|+.+...+.+.|++++|+..+++.+... +-+...|..+...+...|+ +++|...++.+.+.. +.+...+..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456667777777888888888888764332 3345566667777777775 888888888887765 556778888888
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhc-cCcHH
Q 005802 436 MYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRH-CGSVE 510 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~g~~~ 510 (676)
++...|++++|...|+++. ..+...|..+..++...|++++|+..|+++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 8889999999999988876 346778999999999999999999999999985 34 56788888888888 66657
Q ss_pred HH-----HHHHHHchhhcCCCCC-HHHHHHHHHHHhhcC--CHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhC------
Q 005802 511 MG-----EKYFNSMTADYKISPE-TDHYACMIDLYGRAN--QLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNR------ 575 (676)
Q Consensus 511 ~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~------ 575 (676)
+| +..+++.... .|+ ...|..+..++.+.| ++++|++.++++. .+.+...+..++.++...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5778887743 566 788889999999888 6899999988875 3446678888888888764
Q ss_pred ---CHhHHHHHHHHH-HcccCCCCccHHHHHHHHHhc
Q 005802 576 ---NAELAGEAEEKL-LRLEGNNKARYVQLANVYAAE 608 (676)
Q Consensus 576 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 608 (676)
.+++|+.+++++ .+.+|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 899999999999888776543
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=1.8e-11 Score=116.11 Aligned_cols=226 Identities=11% Similarity=-0.004 Sum_probs=175.8
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh----hcChhHHHHHHHHHHHcCCCCChhHH
Q 005802 355 NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL----QAALHPGKEIHAYILRMGVQMDKKLI 430 (676)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 430 (676)
++.++..+...+...|++++|+..|++.. . +.+...+..+...+.. .+++++|...++...+.+ ++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-D---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-H---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34455666667777777777777777763 3 2344556666666666 777777777777777765 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhhcCC-CCcchHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005802 431 STLVDMYSK----CGNMTYAEIIFQNFIE-RDLVLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 431 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 501 (676)
..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777888888 8888888888887653 356678888888888 899999999999999865 5566777777
Q ss_pred Hhhc----cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005802 502 AFRH----CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL 573 (676)
Q Consensus 502 ~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 573 (676)
.|.. .+++++|...+++..+. .+...+..+...|.. .+++++|++.+++.....++..+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 7777 89999999999998754 246778888999999 99999999999988733447778888888888
Q ss_pred ----hCCHhHHHHHHHHHHcccCCC
Q 005802 574 ----NRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 574 ----~~~~~~a~~~~~~~~~~~p~~ 594 (676)
.+++++|...++++.+..|++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999988864
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=9.3e-13 Score=133.27 Aligned_cols=268 Identities=13% Similarity=0.100 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCC--C-C----chhHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCC-HhHH
Q 005802 327 SISSMIVGYSLQGNMEEARRHFDSLTE--K-N----VVVWTALFSGYVKAQNCEALFDLLSEFVTK---EGVVTD-ALIL 395 (676)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~ 395 (676)
.+......+...|++++|...|+++.+ | + ...|..+...+...|++++|...+++.+.. .+..|. ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344455566667777777777766543 2 2 134556666666777777777777665322 111111 2334
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 005802 396 VILLGACALQAALHPGKEIHAYILRMGVQ-MD----KKLISTLVDMYSKCGN--------------------MTYAEIIF 450 (676)
Q Consensus 396 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 450 (676)
..+...+...|++++|...+..+.+.... ++ ..++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44555555666666666655554432100 01 2244445555555555 55555554
Q ss_pred hhcCC-----C----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHhhccCcHHHHHHHH
Q 005802 451 QNFIE-----R----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPD----AVTFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 451 ~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
++... . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 43321 0 112344445555555555555555555443100 011 113444444555555555555555
Q ss_pred HHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCc----HHHHHHHHHHHHHhCCHhHHHHHH
Q 005802 517 NSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP----TEED----AVILGSFLNVCRLNRNAELAGEAE 584 (676)
Q Consensus 517 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 584 (676)
++......-.++ ..++..+...|...|++++|.+.++++. ..++ ..++..+..++...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 544321100011 3344445555555555555555554443 0111 223444444555555555555555
Q ss_pred HHHHcccCCC
Q 005802 585 EKLLRLEGNN 594 (676)
Q Consensus 585 ~~~~~~~p~~ 594 (676)
+++.+..+..
T Consensus 331 ~~al~~~~~~ 340 (406)
T 3sf4_A 331 EKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555554444
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=5e-13 Score=137.28 Aligned_cols=206 Identities=9% Similarity=0.015 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNM-TYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEM 484 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 484 (676)
+.+...+...... .+.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|.+.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444433332 244667777888888888888 88888888765 235678999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHhhcc---------CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc--------CCHH
Q 005802 485 LEKGIKPDAVTFVAILSAFRHC---------GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA--------NQLE 546 (676)
Q Consensus 485 ~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~ 546 (676)
.+. .|+...+..+...+... |++++|...+++..+. .|+ ...|..+..+|... |+++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 984 57888888899999999 9999999999999854 455 88899999999998 9999
Q ss_pred HHHHHHHhCC--CC---CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 547 KAIEFMKSIP--TE---EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 547 ~A~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+|++.|+++. .+ .++..|..+..++...|++++|...++++.+.+|+++..+..++.++...|++++|.+.+++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999988 34 47889999999999999999999999999999999999999999999999999999975543
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=8.2e-13 Score=133.96 Aligned_cols=263 Identities=14% Similarity=0.045 Sum_probs=172.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCC--HhHHHHHHHHHHhhcChhHHHHHHHHHHHc----C-CCCChhHHHHHH
Q 005802 362 LFSGYVKAQNCEALFDLLSEFVTKEGVVTD--ALILVILLGACALQAALHPGKEIHAYILRM----G-VQMDKKLISTLV 434 (676)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~ 434 (676)
+...+...|++++|+..|++.+....-.|. ...+..+...+...|+++.|...++.+.+. + .+.....+..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 344445555555555555554332111110 123444444555555555555555444432 1 112234556666
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---------CcchHHHHHHHHHHcCC-----------------hhHHHHHHHHHHHC-
Q 005802 435 DMYSKCGNMTYAEIIFQNFIER---------DLVLYNVMIACYAHHGH-----------------EEKAILLFEEMLEK- 487 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~~- 487 (676)
..|...|++++|...+++.... ...++..+...|...|+ +++|++.+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7777777777777776655311 23366777778888888 88888888776541
Q ss_pred ---CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-
Q 005802 488 ---GIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP-T- 557 (676)
Q Consensus 488 ---g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~- 557 (676)
+-.| ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+.++++. .
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1111 1346777778888999999999998887643211112 2377888899999999999999988776 1
Q ss_pred --CC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC------CccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 558 --EE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------KARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 558 --~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.. ...++..+..++...|++++|...++++++..+.. ...+..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 24567788889999999999999999998884443 347889999999999999999999998764
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=1.8e-12 Score=127.33 Aligned_cols=263 Identities=19% Similarity=0.124 Sum_probs=172.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCC--HhHHHHHHHHHHhhcChhHHHHHHHHHHHc----CCC-CChhHHHHHHH
Q 005802 363 FSGYVKAQNCEALFDLLSEFVTKEGVVTD--ALILVILLGACALQAALHPGKEIHAYILRM----GVQ-MDKKLISTLVD 435 (676)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 435 (676)
...+...|++++|+..|++++......|. ...+..+...+...|+++.|...+..+.+. +.. ....++..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 34444555555555555554332111110 133444444455555555555555443322 111 12345566677
Q ss_pred HHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCC--------------------hhHHHHHHHHHHH
Q 005802 436 MYSKCGNMTYAEIIFQNFIE-----RD----LVLYNVMIACYAHHGH--------------------EEKAILLFEEMLE 486 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m~~ 486 (676)
.|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777766531 11 2366777778888888 8888888877654
Q ss_pred C----CCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 487 K----GIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 487 ~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
. +..|. ...+..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11111 346777778888999999999999887643111111 3477888899999999999999998875
Q ss_pred ---CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC------CccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 557 ---TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------KARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 557 ---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
..++ ..++..+...+...|++++|...++++.+..|.. ...+..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1111 4567778889999999999999999998885443 34788999999999999999999999886
Q ss_pred CC
Q 005802 624 MK 625 (676)
Q Consensus 624 ~~ 625 (676)
..
T Consensus 332 ~~ 333 (338)
T 3ro2_A 332 IS 333 (338)
T ss_dssp C-
T ss_pred HH
Confidence 53
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=1.6e-12 Score=123.67 Aligned_cols=218 Identities=12% Similarity=0.031 Sum_probs=179.2
Q ss_pred hhcChhHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHH
Q 005802 404 LQAALHPGKEIHAYILRMGV---QMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 477 (676)
..+++++|...++.+.+... +.+...+..+...|...|++++|...|++.. +.+..+|..+...+...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45788999999999887642 2246678889999999999999999999875 34677899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 478 ILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
...|++..+.. +.+...+..+..++...|++++|...++++... .|+..........+...|++++|...+++..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999853 235778888999999999999999999999854 4664444455556677899999999997766
Q ss_pred -CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC----CCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 557 -TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN----NKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 557 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.+++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|...|++++|...++++.+..+
T Consensus 173 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 173 KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 44444444 4677788888999999999999988664 367899999999999999999999999987654
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=6e-12 Score=127.28 Aligned_cols=272 Identities=13% Similarity=0.054 Sum_probs=174.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005802 261 TFASALSACCGLRNVKCAKEIHSWVLKNGLISN---PFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSL 337 (676)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 337 (676)
.+......+...|+++.|...++.+.+.+.... ..++..+...|...|+++.|...+.+..
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------- 74 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL---------------- 74 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------------
Confidence 333444445555555555555555555432110 1334445555555555555554333221
Q ss_pred cCCHHHHHHHHhccCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHHhhcC----
Q 005802 338 QGNMEEARRHFDSLTEK--NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD----ALILVILLGACALQAA---- 407 (676)
Q Consensus 338 ~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~---- 407 (676)
.+......+ ...++..+...+...|++++|+..+++.+......++ ..++..+...+...|+
T Consensus 75 --------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 146 (406)
T 3sf4_A 75 --------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146 (406)
T ss_dssp --------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred --------HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccc
Confidence 222222211 1234566666777777777777777665332211122 3356666777777888
Q ss_pred ----------------hhHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----
Q 005802 408 ----------------LHPGKEIHAYILRM----GV-QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-----RD---- 457 (676)
Q Consensus 408 ----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~---- 457 (676)
++.|...+....+. +. +....++..+...|...|++++|...+++..+ ++
T Consensus 147 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 88888877766543 21 11234677888999999999999999987752 12
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE---- 528 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---- 528 (676)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 306 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 23788889999999999999999999875211 111 456778888999999999999999988643211122
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
..++..+...|.+.|++++|.+.+++..
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889999999999999999998764
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=1.4e-09 Score=114.65 Aligned_cols=436 Identities=10% Similarity=-0.009 Sum_probs=258.3
Q ss_pred HHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccc---hHHHHHh
Q 005802 106 DALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRC---YEEACRV 182 (676)
Q Consensus 106 ~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 182 (676)
+.+..|++.+. . .+-|..+|..++..+.+.+.++.+..+++.+... .+.....|...+..-.+.|. ++.+..+
T Consensus 50 d~i~~lE~~l~--~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 50 DVIGKLNDMIE--E-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHH--H-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 55556666554 1 2347778888888888888888888888888877 23333456777777777777 8888888
Q ss_pred hhhcCC-C---CchhhHHHHHHHHHhcCCh--------hHHHHHHhh----CCC-CC-CeeeHHHHHHHHH---------
Q 005802 183 FEGCTE-E---VNLISKNAMVAACCREGEM--------EMALKTFWR----QPE-LN-DAVSWNTLISGYV--------- 235 (676)
Q Consensus 183 ~~~~~~-~---~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~----~~~-~~-~~~~~~~li~~~~--------- 235 (676)
|++... - |++..|...+....+.++. +...++|+. ++. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 876655 2 6666777766655554443 222344433 221 12 2334555554332
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 005802 236 QNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAES 315 (676)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 315 (676)
..++.+.+..+|+..+......-..+|..... +.+.-+...+.+++.+.. ..++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~---------------------~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELS---------------------AQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhh---------------------HHHHHHHH
Confidence 12335556666666664211111112211110 000000001111111100 01111111
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC--------------C--C------chhHHHHHHHHHHcC---
Q 005802 316 MLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE--------------K--N------VVVWTALFSGYVKAQ--- 370 (676)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------------~--~------~~~~~~li~~~~~~~--- 370 (676)
.+.... .+.+.+.. | + ...|...+..--..+
T Consensus 264 ~~~e~~------------------------~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l 319 (679)
T 4e6h_A 264 LYQDWL------------------------NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLEL 319 (679)
T ss_dssp HHHHHH------------------------HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHH------------------------HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccc
Confidence 111100 00000000 0 0 112333333222111
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 005802 371 ----NCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK-EIHAYILRMGVQMDKKLISTLVDMYSKCGNMTY 445 (676)
Q Consensus 371 ----~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (676)
..+.+..+|++.+.. .+-+...|.....-+...|+.+.|. .+++..... +|.+...+...+....+.|+++.
T Consensus 320 ~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~ 396 (679)
T 4e6h_A 320 SDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPE 396 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHH
Confidence 123456677776443 3335566666666677788888886 899888764 45666777788888888999999
Q ss_pred HHHHHhhcCC-------------CC------------cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 446 AEIIFQNFIE-------------RD------------LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 446 A~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
|.++|+.+.. |+ ...|...+....+.|..+.|..+|.+..+.-..+....|....
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9998887653 21 2368888888888999999999999998851112233343333
Q ss_pred HHhhc-cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHHHHHHHHh
Q 005802 501 SAFRH-CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSFLNVCRLN 574 (676)
Q Consensus 501 ~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~ 574 (676)
..-.+ .++++.|..+|+...+.++ -+...+..+++.....|+.+.|..+|++.. ..| ....|..++..-...
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 22233 3569999999999987642 346667788898889999999999999987 233 345788888888999
Q ss_pred CCHhHHHHHHHHHHcccCCCCc
Q 005802 575 RNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
|+.+.+..+.+++.+..|+++.
T Consensus 555 G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp CCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999999999998753
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=9.9e-12 Score=109.94 Aligned_cols=166 Identities=14% Similarity=0.039 Sum_probs=141.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
+..+|..+...|.+.|++++|...|++.. +.+..+|..+..++.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678888888999999999999888775 3366788889999999999999999999988753 2345667777788
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 579 (676)
+...++++.|...+++.... .|+ ...+..+..+|.+.|++++|++.|++.. .+.++.++..++.++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999998753 444 7888899999999999999999999887 55678899999999999999999
Q ss_pred HHHHHHHHHcccCCCC
Q 005802 580 AGEAEEKLLRLEGNNK 595 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~ 595 (676)
|+..++++++.+|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998754
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.2e-11 Score=113.86 Aligned_cols=188 Identities=15% Similarity=0.098 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---C-CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---E-RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAIL 500 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 500 (676)
++..+..+...+...|++++|...|++.. + ++...+..+..++...|++++|++.+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 33444455555555555555555555443 1 33344444555555555555555555555542 232 33444444
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC-H-------HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc---HHHHHHHH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE-T-------DHYACMIDLYGRANQLEKAIEFMKSIP-TEED---AVILGSFL 568 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~ 568 (676)
.++...|++++|...+++..+. .|+ . ..|..+...+...|++++|++.++++. ..|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5555555555555555555432 222 2 234444444555555555555555544 2222 23333444
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.++.. .+...++++..+.+.++..|.. ......+.+++|...+++..+..
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 44332 2223334444443333222222 22233444599999999888653
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=5.6e-12 Score=134.48 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=140.4
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHH
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACM 535 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 535 (676)
..+|+.|...+.+.|++++|++.|++.++. .|+ ...+..+..+|.+.|++++|...|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 457788888889999999999999998884 564 677888888999999999999999988743 566 7889999
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
..+|.+.|++++|++.|+++. .+.+...+..+..++...|++++|+..++++++++|+++..+..|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998887 455778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005802 614 MGRIRKQMRG 623 (676)
Q Consensus 614 A~~~~~~~~~ 623 (676)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888765
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=1.7e-11 Score=122.70 Aligned_cols=223 Identities=11% Similarity=0.043 Sum_probs=153.9
Q ss_pred HHHhhcChhHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-----CcchHHHHH
Q 005802 401 ACALQAALHPGKEIHAYILRM----GVQM-DKKLISTLVDMYSKCGNMTYAEIIFQNFIE-----R-----DLVLYNVMI 465 (676)
Q Consensus 401 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~ 465 (676)
.+...|++++|...+....+. +-++ ...++..+...|...|+++.|...+++..+ + ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 345566666666666665543 1111 234566677777777777777776665531 1 123677788
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhc---CCCCC-HHHHHHHH
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIK-PD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADY---KISPE-TDHYACMI 536 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~ 536 (676)
..|...|++++|+..+++..+.... ++ ..++..+...|...|++++|...+++...-. +..|+ ..++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 8888889999999888887752111 11 2367778888889999999999888876410 22144 67788889
Q ss_pred HHHhhcCCHHHHHHHHHhCC------CCC-cHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 537 DLYGRANQLEKAIEFMKSIP------TEE-DAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
..|.+.|++++|.+.+++.. ..| ....+..+...+...|+ +++|+.++++. ...|.....+..|+.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 99999999999999988876 122 12234566667788888 77788777776 334445667888999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|++++|.+.+++..+.
T Consensus 351 ~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988763
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.7e-11 Score=108.55 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=109.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHh
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 540 (676)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3444555555566666666655554421 223455555666666666666666666666543 1223566666677777
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
..|++++|.+.++++. .+.+...+..+..++...|++++|...++++.+..|.++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777776665 44566677777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCC
Q 005802 619 KQMRGMKG 626 (676)
Q Consensus 619 ~~~~~~~~ 626 (676)
+++.+..+
T Consensus 168 ~~~~~~~~ 175 (186)
T 3as5_A 168 KKANELDE 175 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 87766443
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=8.6e-11 Score=113.47 Aligned_cols=218 Identities=9% Similarity=0.027 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHH-------hhcCh-------hHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005802 373 EALFDLLSEFVTKEGVVTDALILVILLGACA-------LQAAL-------HPGKEIHAYILRMGVQMDKKLISTLVDMYS 438 (676)
Q Consensus 373 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (676)
++|+..|++.+... +.+...|..+...+. ..|+. ++|..+++...+.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67777777764332 334445555554443 23554 667777766666322344556666666677
Q ss_pred hcCCHHHHHHHHhhcCC--C-Ccc-hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHh-hccCcHHHHH
Q 005802 439 KCGNMTYAEIIFQNFIE--R-DLV-LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF-RHCGSVEMGE 513 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~ 513 (676)
+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777766542 2 232 56666666666777777777777766642 12233333222221 1256777777
Q ss_pred HHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CC--cHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 005802 514 KYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPT----EE--DAVILGSFLNVCRLNRNAELAGEAEEK 586 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 586 (676)
.+|+...+. .|+ ...|..++..+.+.|+.++|..+|+++.. +| ....|..++......|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777766543 233 56666666666667777777777666652 32 234566666666666777777777777
Q ss_pred HHcccCCCCc
Q 005802 587 LLRLEGNNKA 596 (676)
Q Consensus 587 ~~~~~p~~~~ 596 (676)
+.+..|+++.
T Consensus 267 a~~~~p~~~~ 276 (308)
T 2ond_A 267 RFTAFREEYE 276 (308)
T ss_dssp HHHHTTTTTS
T ss_pred HHHHcccccc
Confidence 7766666543
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=3.1e-12 Score=124.05 Aligned_cols=240 Identities=15% Similarity=0.093 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHH
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFVTKE------GVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLI 430 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 430 (676)
.++..+...+...|++++|+..+++++... ..+.....+..+...+...|++++|...+..+.+..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 457777788888888888888888763210 111122333444444444445554444444433320
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhc--C--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHhHHHHH
Q 005802 431 STLVDMYSKCGNMTYAEIIFQNF--I--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEK------GIKP-DAVTFVAI 499 (676)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l 499 (676)
... . .....++..+...+...|++++|...+++..+. +-.| ....+..+
T Consensus 100 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 100 --------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 000 0 001234555666666667777777776666542 1122 23456666
Q ss_pred HHHhhccCcHHHHHHHHHHchhhc-----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC----------CC----
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADY-----KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPT----------EE---- 559 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~---- 559 (676)
...+...|++++|..+++++.... +..|. ...+..+..+|...|++++|.+.++++.. .+
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 677777788888877777765421 11233 55677777788888888888877776651 01
Q ss_pred ---cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 560 ---DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 560 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
....+......+...+.+.++...++++....|..+..+..++.+|...|++++|.+.+++..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11122222334445667777777888888778888888999999999999999999999887653
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=7.1e-11 Score=115.75 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TD 530 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 530 (676)
.+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455555666666666666666666553110 011 225666667777778888887777766432111111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-C---CC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-T---EE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
++..+...+...|++++|.+.++++. . .+ ...++..+..++...|++++|...++++.++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 67777888888888888888887765 1 11 1336677788888999999999999998887554
No 72
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=1.5e-11 Score=124.62 Aligned_cols=235 Identities=16% Similarity=0.072 Sum_probs=149.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc---CCC-CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHc----C-CCCChhH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTK---EGV-VTDALILVILLGACALQAALHPGKEIHAYILRM----G-VQMDKKL 429 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 429 (676)
|..+...+...|++++|+..+++.+.. .+. +.....+..+...+...|++++|...+..+.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444455555555555555444211 011 111233444444455555555555555444332 1 1112335
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCChhHHHHHHHH
Q 005802 430 ISTLVDMYSKCGN-----------------MTYAEIIFQNFIE-------R--DLVLYNVMIACYAHHGHEEKAILLFEE 483 (676)
Q Consensus 430 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 483 (676)
+..+...|...|+ +++|...+++... + ...++..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5566667777777 7777666665431 1 233677788888999999999999988
Q ss_pred HHHCCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 005802 484 MLEKGIK-PD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKS 554 (676)
Q Consensus 484 m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 554 (676)
..+.... ++ ..++..+...+...|++++|...+++......-..+ ..++..+...+...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7762110 12 236777888899999999999999887643211111 56788889999999999999999988
Q ss_pred CC-C---CC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 555 IP-T---EE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 555 ~~-~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
.. . .+ ...++..+..++...|++++|...++++.++.+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 76 1 11 2346777888999999999999999999987553
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=7.3e-09 Score=109.13 Aligned_cols=215 Identities=8% Similarity=0.007 Sum_probs=165.6
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAE-IIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
+..+|+..... ++....+|...+..+.+.|+.++|. .+|+... ..+...|...+....+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44567777765 3567888888888888999999996 9998775 33555678888889999999999999999886
Q ss_pred CCC---------CCC------------HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc-CC
Q 005802 487 KGI---------KPD------------AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA-NQ 544 (676)
Q Consensus 487 ~g~---------~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~ 544 (676)
... .|+ ...|...+....+.|..+.|..+|....+. ...+....|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCC
Confidence 310 142 235777777777889999999999999754 1112344454444444444 45
Q ss_pred HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC---CCccHHHHHHHHHhcCChhHHHHHHH
Q 005802 545 LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN---NKARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 545 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
.+.|.++|+... .+.++..|..++......|+.+.|..+|++++...|+ ....|..++..-.+.|+.+.+.++.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999887 5557778888888888999999999999999998773 44567788888888999999999999
Q ss_pred HHHhCCCc
Q 005802 620 QMRGMKGN 627 (676)
Q Consensus 620 ~~~~~~~~ 627 (676)
++.+.-++
T Consensus 566 R~~~~~P~ 573 (679)
T 4e6h_A 566 RFFEKFPE 573 (679)
T ss_dssp HHHHHSTT
T ss_pred HHHHhCCC
Confidence 99886554
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=5.6e-11 Score=121.98 Aligned_cols=179 Identities=9% Similarity=0.008 Sum_probs=158.0
Q ss_pred HHHHHHHHhhcC---CCCcchHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHH
Q 005802 443 MTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHE-EKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFN 517 (676)
Q Consensus 443 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 517 (676)
++++...++... ..+...+..+...+...|++ ++|++.|++..+. .| +...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666543 23667888899999999999 9999999999985 45 47789999999999999999999999
Q ss_pred HchhhcCCCCCHHHHHHHHHHHhhc---------CCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh--------CCHh
Q 005802 518 SMTADYKISPETDHYACMIDLYGRA---------NQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN--------RNAE 578 (676)
Q Consensus 518 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------~~~~ 578 (676)
+.. .+.|+...+..+..+|... |++++|++.++++. .+.+...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4568888999999999999 99999999999987 566788999999999998 9999
Q ss_pred HHHHHHHHHHcccC---CCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 579 LAGEAEEKLLRLEG---NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 579 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+|+..++++++.+| .++..+..++.+|...|++++|.+.+++..+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999987544
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=5.7e-10 Score=107.68 Aligned_cols=214 Identities=11% Similarity=0.092 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCH-------HHHHHHHhhcCC---C-CcchHHHHHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSK-------CGNM-------TYAEIIFQNFIE---R-DLVLYNVMIACYAH 470 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 470 (676)
+.|..+++.+.... +.++..+..++..+.. .|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666777776653 5566777777766653 4775 888888887653 3 44578888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH-h-HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHh-hcCCHH
Q 005802 471 HGHEEKAILLFEEMLEKGIKPDA-V-TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYG-RANQLE 546 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 546 (676)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 8899999999988887 45543 2 6888888888888899999988888743 333 555544444322 368889
Q ss_pred HHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc---cCC-CCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 547 KAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL---EGN-NKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 547 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+|.++|+++. .+.++..|..++..+...|++++|..+|+++++. .|+ +...|..++..+.+.|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9988888876 4556778888888888888999999999988885 332 556788888888888999999988888
Q ss_pred HHhCCCcc
Q 005802 621 MRGMKGNR 628 (676)
Q Consensus 621 ~~~~~~~~ 628 (676)
+.+..++.
T Consensus 267 a~~~~p~~ 274 (308)
T 2ond_A 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHcccc
Confidence 88766643
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=2.7e-10 Score=104.57 Aligned_cols=205 Identities=15% Similarity=0.063 Sum_probs=160.9
Q ss_pred CCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHH
Q 005802 390 TDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVMIA 466 (676)
Q Consensus 390 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 466 (676)
.|+..+......+...|++++|...+....+...+++...+..+..++...|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999987547777777899999999999999999998763 3 4568888999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-H-------hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC---HHHHHHH
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPD-A-------VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE---TDHYACM 535 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 535 (676)
.+...|++++|++.+++..+. .|+ . ..|..+...+...|++++|...|++.. ...|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999999984 454 3 457777788899999999999999997 44665 5677788
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
..+|...|+. .++++. .+.+...+... .....+.+++|+..++++.++.|+++.+...|..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766653 222222 12233333333 2345677999999999999999999888777766643
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=1.2e-09 Score=109.14 Aligned_cols=227 Identities=12% Similarity=0.045 Sum_probs=146.4
Q ss_pred HHhcCCHHHHHHHHhccCC-----CC----chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhh
Q 005802 335 YSLQGNMEEARRHFDSLTE-----KN----VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQ 405 (676)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 405 (676)
+...|++++|...|++..+ ++ ..+|..+...|...|+++.|+..+++.+....-.++.
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~------------- 179 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY------------- 179 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT-------------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc-------------
Confidence 3344444444455554432 11 2456777777888888888888887753221111110
Q ss_pred cChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChhH
Q 005802 406 AALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-----RD----LVLYNVMIACYAHHGHEEK 476 (676)
Q Consensus 406 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~ 476 (676)
.+....++..+...|...|++++|...|++..+ ++ ..++..+...|...|++++
T Consensus 180 -----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 180 -----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 000122344455555555666666555554431 11 1367778888888888888
Q ss_pred HHHHHHHHHHC----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCC--CCC-HHHHHHHHHHHhhcCC---H
Q 005802 477 AILLFEEMLEK----GIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKI--SPE-TDHYACMIDLYGRANQ---L 545 (676)
Q Consensus 477 A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~ 545 (676)
|+..+++..+. +..| ...++..+...+...|++++|...+++......- .|. ...+..+...+...|+ .
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 88888887761 2223 3566778888899999999999998887543111 122 3345678888888998 8
Q ss_pred HHHHHHHHhCCCCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 546 EKAIEFMKSIPTEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 546 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
++|+.++++....| ....+..+...|...|++++|...++++.+..
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999986433 34466778889999999999999999998773
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=4e-10 Score=99.51 Aligned_cols=168 Identities=10% Similarity=0.046 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFR 504 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 504 (676)
..+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45666788889999999999999988743 56678888999999999999999999998853 335778888889999
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH
Q 005802 505 HCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE 582 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 582 (676)
..|++++|...++++... .+.+...+..+...+...|++++|.+.++++. .+.++..+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999764 23357888899999999999999999999887 55577889999999999999999999
Q ss_pred HHHHHHcccCCCCccH
Q 005802 583 AEEKLLRLEGNNKARY 598 (676)
Q Consensus 583 ~~~~~~~~~p~~~~~~ 598 (676)
.++++.+..|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999988876543
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=4.8e-09 Score=104.48 Aligned_cols=258 Identities=9% Similarity=-0.028 Sum_probs=145.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCHh----HHHHHHHHHHhhcChhHHHHHHHHHHHcCC-CCC----hhHHHHHHH
Q 005802 365 GYVKAQNCEALFDLLSEFVTKEGVVTDAL----ILVILLGACALQAALHPGKEIHAYILRMGV-QMD----KKLISTLVD 435 (676)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~ 435 (676)
.+...|++++|...+++.+.... ..+.. .+..+...+...|+++.|...+........ ..+ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445555555555555422221 11111 233333444455555555555554443210 011 122345566
Q ss_pred HHHhcCCHHHHHHHHhhcCC----------C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C--CHhHHHHHH
Q 005802 436 MYSKCGNMTYAEIIFQNFIE----------R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIK--P--DAVTFVAIL 500 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~ll 500 (676)
.+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66677777777766665431 1 1124455666777778888888888777653211 1 123455666
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCc-----HHHHHHHHH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPETDHYA-----CMIDLYGRANQLEKAIEFMKSIP-TEED-----AVILGSFLN 569 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~ 569 (676)
..+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 677778888888888877654311111111111 23344667888888888887776 1111 224456666
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCC------CccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNN------KARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
++...|++++|...++++.+..+.. ...+..++.++...|++++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888888888888877663321 13566677888888888888888877765
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=3.5e-10 Score=106.32 Aligned_cols=203 Identities=11% Similarity=0.020 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC-HhHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-D---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPD-AVTFVA 498 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~ 498 (676)
...+..+...+.+.|++++|...|+.+.+ | + ...+..+..++...|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444445555555555555555555442 1 1 23444455555555555555555555554211 011 223333
Q ss_pred HHHHhhc--------cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHH
Q 005802 499 ILSAFRH--------CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLN 569 (676)
Q Consensus 499 ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 569 (676)
+..++.. .|++++|...|+++...+ |+ ......+.......+.. ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4444444 555555555555554331 22 11111111100000000 011356677
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCC---ccHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCcccCceeEEE
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNK---ARYVQLANVYAAE----------GNWAEMGRIRKQMRGMKGNRFAGCSWVY 636 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 636 (676)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..+.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~--------- 227 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD--------- 227 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC---------
Confidence 89999999999999999999999854 4788999999877 8999999999999875442
Q ss_pred EcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 005802 637 VEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYE 670 (676)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (676)
+|...+....+..+...+.+
T Consensus 228 --------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 --------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------CTHHHHHHHHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHHHHHHHH
Confidence 66666777777777666654
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=3.5e-11 Score=116.56 Aligned_cols=241 Identities=14% Similarity=0.120 Sum_probs=144.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhccCC--------C---CchhHHHHHHHHHHcCChHHHHHHHHHHHHcC-----C-
Q 005802 325 SFSISSMIVGYSLQGNMEEARRHFDSLTE--------K---NVVVWTALFSGYVKAQNCEALFDLLSEFVTKE-----G- 387 (676)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~- 387 (676)
..++..+...+...|++++|..+|+++.+ . ....+..+...+...|++++|...+++.+... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 35678888899999999999999998764 1 23467888999999999999999999874321 1
Q ss_pred CCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc--CC-C-CcchHHH
Q 005802 388 VVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNF--IE-R-DLVLYNV 463 (676)
Q Consensus 388 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~-~-~~~~~~~ 463 (676)
.+....++..+...+...|++++|...+..+.+.. ... .. + ....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHHHH
Confidence 11223334444444455555555555544443320 000 00 0 1234566
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC------CCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhc------CCCCC--
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEK------GIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADY------KISPE-- 528 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-- 528 (676)
+...+...|++++|.+.+++..+. +..|+ ..++..+...+...|++++|...++++.... ...|.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 666777777777777777776653 11222 3456667777788888888888887776421 01111
Q ss_pred -----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 529 -----TDHYACMIDLYGRANQLEKAIEFMKSIP-T-EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 529 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
...+..+...+...+.+.+|...++... . +....++..+..+|...|++++|...+++++++.|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122223333444556666666676666 2 335567888899999999999999999999988764
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=4e-09 Score=105.13 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcC--CCCC-HHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEK----GIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK--ISPE-TDH 531 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~-~~~ 531 (676)
+++.+...|...|++++|.+.+++..+. +-.+ ...++..+..+|...|++++|...+++...-.. ..|. ..+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444555555555555555555554431 1011 123455555566666666666666665543100 1222 455
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----C--CC-cHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCCCCccHHHH
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP----T--EE-DAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
+..+...+.+.|++++|.+.+++.. . .| ....+..+...+...++ +++|+..+++.. ..|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHH
Confidence 5666666666666666666666544 1 11 12233334444555555 555555555521 233334456677
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 005802 602 ANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+.+|...|++++|.+.+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=2.8e-09 Score=99.21 Aligned_cols=197 Identities=12% Similarity=0.053 Sum_probs=136.8
Q ss_pred HHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchh
Q 005802 446 AEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTA 521 (676)
Q Consensus 446 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 521 (676)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666542 344455667778888889999998888887655322 355667777888888999999999988864
Q ss_pred hcCCCC-----CHHHHHHHHHH--HhhcC--CHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-
Q 005802 522 DYKISP-----ETDHYACMIDL--YGRAN--QLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL- 590 (676)
Q Consensus 522 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 590 (676)
. .| +..+...|+.+ ....| ++.+|..+|+++. ..|+......+++++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 56 24455555544 33334 8888888888877 3444333344445788889999999998877766
Q ss_pred ---------cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHH
Q 005802 591 ---------EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVL 661 (676)
Q Consensus 591 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (676)
+|+++.+...++.+....|+ +|.++++++++..++ ||-+......-
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~-----------------------hp~i~d~~~k~ 296 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE-----------------------HAFIKHHQEID 296 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC-----------------------CHHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC-----------------------ChHHHHHHHHH
Confidence 47788888777777777786 888888888876553 67666666665
Q ss_pred HHHHHHHHh
Q 005802 662 AIFTGELYE 670 (676)
Q Consensus 662 ~~~~~~~~~ 670 (676)
+..++-+.+
T Consensus 297 ~~Fd~~~~k 305 (310)
T 3mv2_B 297 AKFDELVRK 305 (310)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 555554443
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=2.4e-09 Score=97.83 Aligned_cols=182 Identities=12% Similarity=0.002 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh----HH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIE--RD----LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV----TF 496 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~ 496 (676)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 33445556667777777777777777652 32 135666677777777777777777777763 23321 23
Q ss_pred HHHHHHhhc------------------cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 005802 497 VAILSAFRH------------------CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPT 557 (676)
Q Consensus 497 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 557 (676)
..+..++.. .|++++|...|+++.+. .|+ ...+....... ......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH--------
Confidence 333333332 34555565555555532 233 11111111000 000000
Q ss_pred CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005802 558 EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK---ARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNR 628 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 628 (676)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+++.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00113456678899999999999999999999876 568999999999999999999999999877654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.11 E-value=4.7e-10 Score=119.72 Aligned_cols=163 Identities=10% Similarity=0.157 Sum_probs=139.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHH
Q 005802 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAIL 500 (676)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 500 (676)
.+...++.|...|.+.|++++|.+.|++.. .| +..+|..+..+|.+.|++++|++.|++.++. .|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345677888888888888888888888765 33 5678889999999999999999999999884 565 67888899
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNA 577 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 577 (676)
.++...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|++.|+++. .+.+...+..++.++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999998753 566 8889999999999999999999999987 455778899999999999999
Q ss_pred hHHHHHHHHHHcccC
Q 005802 578 ELAGEAEEKLLRLEG 592 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p 592 (676)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999987744
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=2.8e-08 Score=99.02 Aligned_cols=162 Identities=9% Similarity=0.109 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCH
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIE-----RD----LVLYNVMIACYAHHGHEEKAILLFEEMLE-----KGIKPDA 493 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~ 493 (676)
.+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+ .. +...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHH
Confidence 3455566666667777776666655431 11 23566777888888888888888888776 32 2225
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCC--CCC-HHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCC-cHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKI--SPE-TDHYACMIDLYGRANQ---LEKAIEFMKSIPTEE-DAVILGS 566 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~ 566 (676)
.++..+...+.+.|++++|...+++......- .|. ...+..+...+...|+ ..+|+.++++....| ....+..
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 341 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 66777888888899999999888887654222 222 4456667777778888 888888888865333 3345667
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
+...|...|++++|...++++.+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 778889999999999999988765
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.3e-09 Score=103.72 Aligned_cols=222 Identities=13% Similarity=0.082 Sum_probs=150.7
Q ss_pred HhhcChhHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----CcchHHHH
Q 005802 403 ALQAALHPGKEIHAYILRM-------GVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-------R----DLVLYNVM 464 (676)
Q Consensus 403 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 464 (676)
...|+++.|...+++..+. ..+....++..+...|...|++++|...+++... + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777787777766652 2233456778888899999999999988887641 1 24477888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC------CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhc-----CCCCC-HHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLEK------GIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADY-----KISPE-TDH 531 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 531 (676)
...+...|++++|...+++..+. .-.| ...++..+...+...|++++|..++++..... +..|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999988763 1123 24567778888899999999999998886431 11333 667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-C---------CC-cHHHHHHHHHHHHHhC------CHhHHHHHHHHHHcccCCC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-T---------EE-DAVILGSFLNVCRLNR------NAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-~---------~~-~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~p~~ 594 (676)
+..+..+|.+.|++++|.++++++. . .+ ....+..+...+...+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888899999999999999888765 1 12 2223333333333322 2333334444333334555
Q ss_pred CccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 595 KARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+..+..|+.+|...|++++|...+++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678999999999999999999999988753
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=1.1e-10 Score=98.78 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=94.4
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQL 545 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 545 (676)
+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|.+.|++..+. .|+ ...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 34456666777666665442 232 334555666777777777777777777643 454 67777777777777777
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH-HHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 546 EKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE-AEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 546 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
++|+..|+++. .+.++..+..+..++...|++++|.. .++++++++|+++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777766 44466777777777888887766554 4578888888888888888777777764
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=1.9e-09 Score=89.25 Aligned_cols=128 Identities=15% Similarity=0.208 Sum_probs=83.3
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRL 573 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 573 (676)
+..+...+...|++++|..+++.+... . +.+...+..++..+...|++++|.++++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344445555556666666666655432 1 1234555556666666666666666666554 33455566666777777
Q ss_pred hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 574 NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 574 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777777777777777788888888888888888887776543
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.06 E-value=1.6e-07 Score=93.40 Aligned_cols=230 Identities=7% Similarity=-0.099 Sum_probs=121.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHh----HHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-Cc----hhHHHHHHH
Q 005802 232 SGYVQNGDAEEGLKLFVRMGENGVRWNEH----TFASALSACCGLRNVKCAKEIHSWVLKNGLI-SN----PFVSSGIVD 302 (676)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~ 302 (676)
..+...|++++|...+++........+.. .+..+...+...|+++.|...++........ .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556788888888887776643111211 3444455666778888887777776553211 11 122344555
Q ss_pred HHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCC----CchhHHHHHHHHHHcCChHHHHHH
Q 005802 303 VYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEK----NVVVWTALFSGYVKAQNCEALFDL 378 (676)
Q Consensus 303 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~ 378 (676)
.+...|+++.|...+++. .++......+ ....+..+...+...|++++|...
T Consensus 102 ~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp HHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 566666666666444322 1333333222 122455566777888888888888
Q ss_pred HHHHHHcCCC-CC--CHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHHHHHH
Q 005802 379 LSEFVTKEGV-VT--DALILVILLGACALQAALHPGKEIHAYILRMGVQMDK-KLIS-----TLVDMYSKCGNMTYAEII 449 (676)
Q Consensus 379 ~~~m~~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~ 449 (676)
+++.+....- .+ ...++..+...+...|++++|...++........++. ..+. ..+..+...|++++|...
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8876432211 11 1234555566666777777777777666543211111 1111 122335566666666666
Q ss_pred HhhcCCCCc-------chHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 450 FQNFIERDL-------VLYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 450 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
++....+.. ..+..+...+...|++++|...+++..
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665543221 123344455555555555555555443
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=3e-10 Score=96.13 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=105.5
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR 575 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 575 (676)
|...+...|++++|+..++... ...|+ ...+..+...|.+.|++++|++.|+++. .+.++.+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999999876 34555 5566789999999999999999999988 5668889999999999999
Q ss_pred CHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHH-HHHHHhCC
Q 005802 576 NAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRI-RKQMRGMK 625 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 625 (676)
++++|+..++++++++|+++..+..++.+|.+.|++++|.+. +++..+..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887765 58777643
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=5.1e-09 Score=99.56 Aligned_cols=175 Identities=11% Similarity=0.023 Sum_probs=143.2
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchh
Q 005802 443 MTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTA 521 (676)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 521 (676)
.+.....+......+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344455555555455567777888899999999999999999884 45 466788888999999999999999999875
Q ss_pred hcCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC--Cc
Q 005802 522 DYKISPETDHYA-CMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN--KA 596 (676)
Q Consensus 522 ~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 596 (676)
. .|+..... .....+.+.++.++|+..+++.. .+.+...+..+..++...|++++|+..++++++.+|++ +.
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 4 46643333 33344677888888999998877 56678899999999999999999999999999999988 78
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 597 RYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
.+..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999999988764
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=9.6e-10 Score=105.03 Aligned_cols=201 Identities=10% Similarity=0.025 Sum_probs=142.0
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCChhHH
Q 005802 407 ALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-------R--DLVLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A 477 (676)
++++|...+..+ ...|...|++++|...|.+... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 4457778888888888776542 1 145788889999999999999
Q ss_pred HHHHHHHHHC----CCCC-CHhHHHHHHHHhhcc-CcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHH
Q 005802 478 ILLFEEMLEK----GIKP-DAVTFVAILSAFRHC-GSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 478 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 547 (676)
+..+++..+. |-.+ -..++..+...|... |++++|...|++...-..-..+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999887762 1111 134677888889986 9999999999988653211111 3568889999999999999
Q ss_pred HHHHHHhCC-CCCcH--------HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc-----HHHHHHHHH--hcCCh
Q 005802 548 AIEFMKSIP-TEEDA--------VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR-----YVQLANVYA--AEGNW 611 (676)
Q Consensus 548 A~~~~~~~~-~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 611 (676)
|+..++++. ..|+. ..+..++.++...|++++|+..++++++++|..... +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999876 33321 156777788899999999999999999998886553 344556664 45678
Q ss_pred hHHHHHHHHHH
Q 005802 612 AEMGRIRKQMR 622 (676)
Q Consensus 612 ~~A~~~~~~~~ 622 (676)
++|+..++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888886554
No 94
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.03 E-value=1.1e-09 Score=91.95 Aligned_cols=103 Identities=8% Similarity=0.002 Sum_probs=94.3
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
.+.|+ ...+..+...+.+.|++++|++.|+++. .+.++..|..+..++...|++++|+..|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55676 7788889999999999999999999988 56688899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++.+|...|++++|...+++..+..+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987654
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=5e-09 Score=98.35 Aligned_cols=203 Identities=14% Similarity=0.069 Sum_probs=145.5
Q ss_pred CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---cc
Q 005802 389 VTDALILVILLGACALQAALHPGKEIHAYILRMGVQMD---KKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-D---LV 459 (676)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~ 459 (676)
+.+...+......+...|++++|...++.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+ | + ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456667777788899999999999999998865 223 56778889999999999999999998863 3 2 33
Q ss_pred hHHHHHHHHHH--------cCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHH
Q 005802 460 LYNVMIACYAH--------HGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETD 530 (676)
Q Consensus 460 ~~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 530 (676)
.+..+..++.. .|++++|+..|++.++. .|+.. .... ...+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 56777888888 99999999999999984 35432 2211 1111111111 122
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHHHHHHHHh----------CCHhHHHHHHHHHHcccCCCC
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSFLNVCRLN----------RNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.+..+...|.+.|++++|+..|+++. ..| .+..+..++.++... |++++|+..++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 35567888888999999999888876 223 344666777777755 889999999999999999986
Q ss_pred c---cHHHHHHHHHhcCChhH
Q 005802 596 A---RYVQLANVYAAEGNWAE 613 (676)
Q Consensus 596 ~---~~~~l~~~~~~~g~~~~ 613 (676)
. ....+..++...|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 4 34455555555555443
No 96
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.01 E-value=1.3e-09 Score=91.89 Aligned_cols=109 Identities=10% Similarity=-0.014 Sum_probs=92.7
Q ss_pred HHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 515 YFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 515 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
.++++. .+.|+ ...+..+...+.+.|++++|+..|+++. .+.++..|..+..++...|++++|+..++++++++
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444 44565 6677788889999999999999999877 55688888899999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 592 GNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 592 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
|+++..+..++.+|...|++++|.+.+++..+..+
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999998876544
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=3.9e-09 Score=113.43 Aligned_cols=167 Identities=8% Similarity=-0.038 Sum_probs=98.4
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhc
Q 005802 438 SKCGNMTYAEIIFQNFI-----------ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRH 505 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 505 (676)
...|++++|.+.+++.. ..+...+..+...+...|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44566666666655543 223445556666666666666666666666653 23 34455555666666
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE 582 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 582 (676)
.|++++|...|++..+. .|+ ...+..+..++.+.|++++ ++.|+++. .+.+...+..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666532 343 5556666666666666666 66666655 33455566666666666666666666
Q ss_pred HHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 583 AEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 583 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
.++++++++|++...+..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666655443
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=3.8e-09 Score=92.21 Aligned_cols=159 Identities=7% Similarity=0.042 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 538 (676)
.+..+...+...|++++|...|++..+. .| +...+..+..++...|++++|...++..... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3455566777788888888888776653 34 4566777777888888888888888887644 3333333222222
Q ss_pred -HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC--CccHHHHHHHHHhcCChhH
Q 005802 539 -YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN--KARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 539 -~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 613 (676)
+...+...+|+..+++.. .+.++..+..+..++...|++++|+..++++++.+|+. +..+..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 222233345677777766 45568888999999999999999999999999999875 5589999999999999999
Q ss_pred HHHHHHHHHh
Q 005802 614 MGRIRKQMRG 623 (676)
Q Consensus 614 A~~~~~~~~~ 623 (676)
|...+++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=4.2e-08 Score=91.41 Aligned_cols=180 Identities=10% Similarity=0.074 Sum_probs=132.5
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER-----DLVLYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
+...++.....+ +++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555444443 445555567788888899999999999887433 34567778899999999999999999998
Q ss_pred HCCCCC-----CHhHHHHHHHH--hhc--cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 486 EKGIKP-----DAVTFVAILSA--FRH--CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 486 ~~g~~p-----~~~~~~~ll~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
+ ..| +..+...|..+ ... .+++.+|..+|+++..+ .|+..+-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 456 35666666655 333 34899999999999754 4553333444458999999999999998654
Q ss_pred C------------CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 557 T------------EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 557 ~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
. +.++.++..++......|+ .|.++++++.+..|++|.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 4467777677777777786 88999999999999987543
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=2.7e-09 Score=86.94 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=78.6
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
-+.|+ ...+......|.+.|++++|++.|+++. .+.++..|..+..++...|++++|+..++++++++|+++..|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34566 5667777778888888888888887776 45567777778888888888888888888888888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
++.+|...|++++|.+.+++..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888888888888888877764
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=1.7e-08 Score=83.34 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLY 539 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 539 (676)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... . +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 46667778888888888888888887753 235667777778888888999999888888654 1 23467778888888
Q ss_pred hhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 540 GRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88999999998888876 4456777888888889999999999999999888775
No 102
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.94 E-value=7e-09 Score=86.76 Aligned_cols=102 Identities=11% Similarity=-0.061 Sum_probs=90.2
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
.+.|+ ...+..+...+.+.|++++|+..|+++. .+.++..|..+..++...|++++|+..++++++.+|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 44565 6667778888999999999999999887 55678889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
++.+|...|++++|.+.+++..+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987653
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=7.6e-09 Score=109.32 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=124.6
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHH
Q 005802 440 CGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKY 515 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 515 (676)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.+++..+. .| +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998763 25668888999999999999999999999985 44 467888888999999999999999
Q ss_pred HHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh---CCHhHHHHHHHHHHc
Q 005802 516 FNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN---RNAELAGEAEEKLLR 589 (676)
Q Consensus 516 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 589 (676)
+++..+. .|+ ...+..+..+|.+.|++++|.+.++++. .+.+...+..+..++... |++++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999754 455 7889999999999999999999999987 455778888999999999 999999999999999
Q ss_pred ccCCCCccHHHHH
Q 005802 590 LEGNNKARYVQLA 602 (676)
Q Consensus 590 ~~p~~~~~~~~l~ 602 (676)
.+|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888776
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=5.6e-08 Score=87.58 Aligned_cols=162 Identities=8% Similarity=-0.038 Sum_probs=133.0
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC----cHHHHHHHHHHchhhcCCCCCHHH
Q 005802 456 RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG----SVEMGEKYFNSMTADYKISPETDH 531 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 531 (676)
.++..+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|..+|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 356677777888888899999999999988865 55667777777777 6 899999999998653 25677
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhCCCCCc----HHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 532 YACMIDLYGR----ANQLEKAIEFMKSIPTEED----AVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 532 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
+..|...|.. .+++++|+++|++.....+ +..+..+...|.. .+++++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888887 8899999999999883333 7888888888888 78999999999999988 66778899
Q ss_pred HHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 005802 600 QLANVYAAE-G-----NWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 600 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 626 (676)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999887654
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=1.4e-08 Score=91.23 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=66.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcchHHH----------------HHHHHHHcCChhHHHHHHHHHHHCCCCC-CH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIER---DLVLYNV----------------MIACYAHHGHEEKAILLFEEMLEKGIKP-DA 493 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~ 493 (676)
...+...|++++|...|++.... +...|.. +..++.+.|++++|+..|++..+. .| +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 34445556666666666555421 2223333 444444555555555555554442 22 23
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCcH--HHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ--LEKAIEFMKSIPTEEDA--VILGSFL 568 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~ 568 (676)
..+..+..++...|++++|...|++..+. .|+ ...+..+..+|...|+ .+.+...++... .|++ ..+....
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 34444444455555555555555544422 233 4444444444433322 223333333333 1111 1222233
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
.++...|++++|+..+++++++.|+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3344444555555555555554443
No 106
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=1.5e-08 Score=96.70 Aligned_cols=174 Identities=11% Similarity=0.052 Sum_probs=138.5
Q ss_pred CHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HhHHHHHHHHhhccCcHHHHHHHH
Q 005802 442 NMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEK----GIKPD-AVTFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
++++|...|+.. ...|...|++++|...|++..+. |-.++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888877664 56788899999999999988762 32222 467888999999999999999999
Q ss_pred HHchhhcCCCCC----HHHHHHHHHHHhhc-CCHHHHHHHHHhCC-CCC---c----HHHHHHHHHHHHHhCCHhHHHHH
Q 005802 517 NSMTADYKISPE----TDHYACMIDLYGRA-NQLEKAIEFMKSIP-TEE---D----AVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 517 ~~~~~~~~~~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~~---~----~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
++...-+.-..+ ..++..+..+|... |++++|++.+++.. ..| + ..++..++..+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988643211111 45788899999996 99999999999887 111 1 34678888999999999999999
Q ss_pred HHHHHcccCCCCc-------cHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 584 EEKLLRLEGNNKA-------RYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 584 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++++.+..|.+.. .+..++.++...|++++|...+++..+..+
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999888754 467889999999999999999999876544
No 107
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.89 E-value=2.9e-08 Score=94.25 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----CcchHHHHHHHHHHcCChhHHHHHHHHHHHC------CCC
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIE-------R----DLVLYNVMIACYAHHGHEEKAILLFEEMLEK------GIK 490 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~ 490 (676)
.++..+...|...|++++|...+++... + ...++..+...+...|++++|...+++..+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444555555555555555555554421 1 2335666677777777777777777777653 112
Q ss_pred CC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhc------CCCCC-HHHHHHHHHHHhhcC------CHHHHHHHHHhCC
Q 005802 491 PD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADY------KISPE-TDHYACMIDLYGRAN------QLEKAIEFMKSIP 556 (676)
Q Consensus 491 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~ 556 (676)
|+ ..++..+...+...|++++|..++++..... ...+. ...+..+...+...+ .+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 22 3466677777888888888888887775421 11222 333333333333322 3444555555554
Q ss_pred -CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 557 -TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 557 -~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
..| ...++..+..+|...|++++|...++++++.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 4456778888899999999999999988765
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=4.8e-08 Score=88.32 Aligned_cols=87 Identities=16% Similarity=0.074 Sum_probs=41.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhh
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGR 541 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 541 (676)
.+...+...|++++|+..|++. +.|+...+..+..++...|++++|...+++.... .|+ ...+..+..+|..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHH
Confidence 3344444555555555555443 2334444555555555555555555555554432 122 4444445555555
Q ss_pred cCCHHHHHHHHHhCC
Q 005802 542 ANQLEKAIEFMKSIP 556 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~ 556 (676)
.|++++|++.++++.
T Consensus 84 ~~~~~~A~~~~~~al 98 (213)
T 1hh8_A 84 TEKYDLAIKDLKEAL 98 (213)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 555555555544443
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=5.1e-09 Score=112.50 Aligned_cols=153 Identities=8% Similarity=-0.038 Sum_probs=136.2
Q ss_pred HHcCChhHHHHHHHHHH--------HCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHH
Q 005802 469 AHHGHEEKAILLFEEML--------EKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDL 538 (676)
Q Consensus 469 ~~~~~~~~A~~~~~~m~--------~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 538 (676)
...|++++|++.+++.. + ..| +...+..+..++...|++++|...++++.+. .|+ ...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHH
Confidence 77899999999999998 4 334 4567888888999999999999999999854 455 7889999999
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 539 YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
|...|++++|++.|+++. .+.+...+..+..++...|++++ +..|+++++.+|+++..+..++.+|.+.|++++|.+
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987 55578889999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCc
Q 005802 617 IRKQMRGMKGN 627 (676)
Q Consensus 617 ~~~~~~~~~~~ 627 (676)
.++++.+..+.
T Consensus 556 ~~~~al~l~P~ 566 (681)
T 2pzi_A 556 TLDEVPPTSRH 566 (681)
T ss_dssp HHHTSCTTSTT
T ss_pred HHHhhcccCcc
Confidence 99988776554
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=2e-08 Score=81.74 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=96.5
Q ss_pred CCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHH
Q 005802 489 IKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVIL 564 (676)
Q Consensus 489 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 564 (676)
+.|+ ...+......+.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|++.++++. .+.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4454 345667788899999999999999988754 454 8888899999999999999999999887 56678899
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
..++.++...|++++|+..++++++++|+++..+..|+.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999888877765
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=3.6e-08 Score=88.66 Aligned_cols=161 Identities=9% Similarity=0.048 Sum_probs=122.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHH----------------HHHHhhccCcHHHHHHHHHHchhhc
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVA----------------ILSAFRHCGSVEMGEKYFNSMTADY 523 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~ 523 (676)
+......+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 334456677889999999999998874 454 345555 778889999999999999998754
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCC--HhHHHHHHHHHHcccCCCCccH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRN--AELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
.|+ ...+..+..++...|++++|+..|+++. .+.++..+..++.++...|+ .+.+...++++....|. ...+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 465 8888999999999999999999999887 55577888888888766553 45566666666543322 2245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
..++.++...|++++|+..+++..+..+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 66788888899999999999999877664
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=2.3e-07 Score=88.48 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=122.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCC-CCCHh----HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHH
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEKGI-KPDAV----TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYAC 534 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 534 (676)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...+++......-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999999887321 22211 2334666677888999999999998763222233 346889
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-----CCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC------CccHH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP-----TEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------KARYV 599 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 599 (676)
+...|...|++++|++.++++. .+. ...++..++.+|...|++++|+..++++++..+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988876 111 22367888889999999999999999999884433 56789
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 005802 600 QLANVYAAEGN-WAEMGRIRKQMRG 623 (676)
Q Consensus 600 ~l~~~~~~~g~-~~~A~~~~~~~~~ 623 (676)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988765
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=3.6e-08 Score=94.83 Aligned_cols=219 Identities=11% Similarity=0.022 Sum_probs=151.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh-hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 005802 369 AQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL-QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAE 447 (676)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 447 (676)
.|++++|.+++++...... . .+.. .++++.|...+.. ....|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~----------~~~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T----------SFMKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C----------CSSSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c----------cccCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHH
Confidence 4566777777776521111 0 0111 3555555555543 356788889999998
Q ss_pred HHHhhcCC-----CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HhHHHHHHHHhhccCcHHHHH
Q 005802 448 IIFQNFIE-----RD----LVLYNVMIACYAHHGHEEKAILLFEEMLEKGI---KPD--AVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 448 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~ 513 (676)
..|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88876642 11 34788888999999999999999998775211 121 3467778888888 9999999
Q ss_pred HHHHHchhhcCCC--C-C-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CCc----HHHHHHHHHHHHHhCCHhHHH
Q 005802 514 KYFNSMTADYKIS--P-E-TDHYACMIDLYGRANQLEKAIEFMKSIP-T---EED----AVILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 514 ~~~~~~~~~~~~~--p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~~~~~~a~ 581 (676)
..+++...-+.-. + . ..++..+...|.+.|++++|++.+++.. . .++ ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999886532111 1 1 4678888999999999999999998876 1 111 225556666777889999999
Q ss_pred HHHHHHHcccCCCCccH-----HHHHHHHHhcCChhHHHHH
Q 005802 582 EAEEKLLRLEGNNKARY-----VQLANVYAAEGNWAEMGRI 617 (676)
Q Consensus 582 ~~~~~~~~~~p~~~~~~-----~~l~~~~~~~g~~~~A~~~ 617 (676)
..+++++ ..|...... ..++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 999877653 3444444 56787766663
No 114
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.79 E-value=4.3e-08 Score=85.59 Aligned_cols=121 Identities=14% Similarity=0.184 Sum_probs=84.2
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH-HHHhCCH-
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV-CRLNRNA- 577 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~- 577 (676)
+...|++++|...++..... .| +...+..+...|...|++++|+..++++. .+.++..+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34556777777777776543 23 36677777777777777777777777765 34456666677777 6677777
Q ss_pred -hHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 578 -ELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 578 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++|+..++++++.+|.++..+..++.+|...|++++|...++++.+..+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8888888888888888878888888888888888888888887776544
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=5.6e-08 Score=102.64 Aligned_cols=146 Identities=13% Similarity=0.024 Sum_probs=75.7
Q ss_pred cChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHH
Q 005802 406 AALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFE 482 (676)
Q Consensus 406 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 482 (676)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...+...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666555443 33455566666666666666666666665542 234456666666666666666666666
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc---CCHHHHHHHHHhCC
Q 005802 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA---NQLEKAIEFMKSIP 556 (676)
Q Consensus 483 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 556 (676)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .|+ ...+..+..++... |+.++|.+.+++..
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 666532 123455556666666666666666666666543 233 55566666666666 66666666666554
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=1.5e-07 Score=89.92 Aligned_cols=164 Identities=10% Similarity=-0.028 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-----hHHHHHHHHhhccCcHHHHHHHHHHchhhcC--CCCC--HH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA-----VTFVAILSAFRHCGSVEMGEKYFNSMTADYK--ISPE--TD 530 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 530 (676)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445677788899999999999888875322111 1233455567788999999999988764311 1122 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCCc-----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC--C----C
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP----TEED-----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN--N----K 595 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~ 595 (676)
+++.+...|...|++++|++.++++. ..|+ ..++..++.+|...|++++|+..++++++..+. + +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78899999999999999999998765 1122 257888889999999999999999999987432 1 4
Q ss_pred ccHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 005802 596 ARYVQLANVYAAEGNWAEM-GRIRKQMRG 623 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 623 (676)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5688999999999999999 777877654
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=1.3e-06 Score=82.40 Aligned_cols=211 Identities=8% Similarity=0.063 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhcC---CCCcchHHHHHHHH----HHc---CChhH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCG--NMTYAEIIFQNFI---ERDLVLYNVMIACY----AHH---GHEEK 476 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~~ 476 (676)
++|..+...++..+ +-+...++.-...+...| ++++++..++.+. ..+..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34455555554443 333444555555555555 6777777777665 22444555544333 444 67888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHH--HHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCC------HHHH
Q 005802 477 AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVE--MGEKYFNSMTADYKISPETDHYACMIDLYGRANQ------LEKA 548 (676)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A 548 (676)
++.+++++.+.. +-+...|..-...+.+.|.++ ++++.++.+.+. . .-|...|+.-..++.+.|. ++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 888888888753 335666666666666677777 888888888764 1 2346677766666666665 7888
Q ss_pred HHHHHhCC--CCCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHccc---CCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 549 IEFMKSIP--TEEDAVILGSFLNVCRLNRN-AELAGEAEEKLLRLE---GNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 549 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
++.++++. .+.|...|......+...|. .+....+++++.+.. |.++..+..|+.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88887776 56678888888888877776 444666777777765 7777888888888888889999999888887
Q ss_pred h
Q 005802 623 G 623 (676)
Q Consensus 623 ~ 623 (676)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.76 E-value=5.7e-08 Score=79.20 Aligned_cols=119 Identities=12% Similarity=-0.018 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+.+.|++++|++.|++.. .+.++..|..+..++...|++++|+..++++++.+|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4567777888888999999999998877 55577888889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 005802 607 AEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGE 667 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (676)
..|++++|...+++..+..++. ...|....+...+.++..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~--------------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEV--------------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH--------------------HTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCccc--------------------CCchhHHHHHHHHHHHHHh
Confidence 9999999999999887654211 1236666666666666554
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=7.7e-08 Score=91.34 Aligned_cols=134 Identities=10% Similarity=-0.046 Sum_probs=114.0
Q ss_pred CCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHH
Q 005802 491 PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFL 568 (676)
Q Consensus 491 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 568 (676)
.+...+..+...+...|++++|...|++.... .|+ ...+..+..++.+.|++++|...++++. ..|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34556677778889999999999999999854 565 7889999999999999999999999998 456555443333
Q ss_pred H-HHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 569 N-VCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 569 ~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
. .+...++.+.|+..++++.+.+|+++..+..|+.+|...|++++|...++++.+..+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3 4678888999999999999999999999999999999999999999999999887654
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=3.4e-07 Score=83.43 Aligned_cols=185 Identities=9% Similarity=-0.011 Sum_probs=131.3
Q ss_pred HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCC-cc---hHHH
Q 005802 392 ALILVILLGACALQAALHPGKEIHAYILRMGVQM--DKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERD-LV---LYNV 463 (676)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~~~ 463 (676)
...+..+...+...|++++|...++.+.+..... ....+..+..+|.+.|++++|...|+++. .|+ .. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455566677889999999999999999864322 13567788999999999999999999876 333 22 4455
Q ss_pred HHHHHHH------------------cCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHHchhhcC
Q 005802 464 MIACYAH------------------HGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFNSMTADYK 524 (676)
Q Consensus 464 l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 524 (676)
+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH-----
Confidence 5555554 57899999999999984 46543 2221111 00111111
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cH---HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 525 ISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DA---VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 525 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
......+...|.+.|++++|+..|+++. ..| ++ ..+..+..++...|++++|+..++++....|++...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1122356788899999999999999887 333 32 467788889999999999999999999888886543
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=1.1e-07 Score=81.76 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=101.5
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
..+..+...+...|++++|...++..... .| +...+..+..++...|++++|++.+++.. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34556666777788888888888887653 33 47778888888888888888888888776 45567788888889
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV--YAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 623 (676)
+...|++++|...++++.+..|.++..+..+..+ +...|++++|.+.++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999988877554444 8888999999999887654
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=1.1e-07 Score=78.32 Aligned_cols=115 Identities=12% Similarity=0.022 Sum_probs=83.5
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLN 569 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 569 (676)
...+..+...+...|++++|...+++... ..| +...+..+..++...|++++|++.++++. .+.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 44556666666777777777777776653 233 36666777777777777777777777665 3446677777778
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
++...|++++|...++++.+..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888877664
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=1.4e-07 Score=82.12 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=105.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHH-H
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNV-C 571 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~-~ 571 (676)
.+..+...+...|++++|...+++..+. .|+ ...+..+..++.+.|++++|+..++++. ..|++..+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 3455667788999999999999998754 465 7889999999999999999999999998 44455443333222 2
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
...++...|+..++++++.+|+++..+..++.+|...|++++|...++++.+..+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 23334456899999999999999999999999999999999999999999887654
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=1.5e-07 Score=77.06 Aligned_cols=118 Identities=9% Similarity=-0.032 Sum_probs=93.5
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++.. .+.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666667777788888888888877653 12246777788888888888888888887776 44567788888888
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChh
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWA 612 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 612 (676)
+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998889999999998888763
No 125
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=6e-08 Score=78.17 Aligned_cols=96 Identities=15% Similarity=-0.121 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhc
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAE 608 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 608 (676)
.+..+...+.+.|++++|+..++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567788889999999999999887 5557888889999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 005802 609 GNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 609 g~~~~A~~~~~~~~~~~~ 626 (676)
|++++|...+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887654
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=2.2e-07 Score=75.25 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=86.2
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
...+..+...+...|++++|...++++.... +.+...+..+...+.+.|++++|..+++++. .+.+...+..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3456666677777778888877777776531 2236677777778888888888888877766 44566777788888
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888998888888888888888888888776554
No 127
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.66 E-value=9.3e-08 Score=75.81 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC--CCccHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN--NKARYVQLANV 604 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 604 (676)
...+..+...+.+.|++++|...++++. .+.+...+..+..++...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5566677888888888888888888776 4556778888888999999999999999999999999 88999999999
Q ss_pred HHhc-CChhHHHHHHHHHHhCCCc
Q 005802 605 YAAE-GNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 605 ~~~~-g~~~~A~~~~~~~~~~~~~ 627 (676)
|... |++++|.+.++...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999998876553
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=9.6e-08 Score=92.91 Aligned_cols=95 Identities=19% Similarity=0.022 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...|..+..+|.+.|++++|+..++++. .+.+...+..+..++...|++++|+..++++++++|+++..+..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4678889999999999999999999887 55678889999999999999999999999999999999999999999999
Q ss_pred hcCChhHH-HHHHHHHHh
Q 005802 607 AEGNWAEM-GRIRKQMRG 623 (676)
Q Consensus 607 ~~g~~~~A-~~~~~~~~~ 623 (676)
..|++++| ...++.|..
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 456666643
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=5.3e-07 Score=81.30 Aligned_cols=145 Identities=10% Similarity=-0.012 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
+..+...+...|++++|...|++...++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45567777888889999988888887788888888888888899999998888888753 33566777888888888999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEE-DAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
++|...|+.......-.+... +...|. ...| ....+..+..++...|++++|...++++.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999888888875311111000 000000 0111 23445555556666666666666666666
Q ss_pred cccCCC
Q 005802 589 RLEGNN 594 (676)
Q Consensus 589 ~~~p~~ 594 (676)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 666653
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=1.2e-06 Score=78.75 Aligned_cols=172 Identities=15% Similarity=0.038 Sum_probs=130.2
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CcchHHHHHHHHHHcC----ChhHHHHHHHHHH
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER-DLVLYNVMIACYAHHG----HEEKAILLFEEML 485 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~~A~~~~~~m~ 485 (676)
|...+....+.| ++..+..|...|...+++++|...|++..+. ++..+..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 5666677777777788888888888876543 56677777777776 6 8999999999998
Q ss_pred HCCCCCCHhHHHHHHHHhhc----cCcHHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 005802 486 EKGIKPDAVTFVAILSAFRH----CGSVEMGEKYFNSMTADYKISPE---TDHYACMIDLYGR----ANQLEKAIEFMKS 554 (676)
Q Consensus 486 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 554 (676)
+.| +...+..|...|.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|+++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 765 56677777777777 88999999999998743 342 7788888888888 7899999999998
Q ss_pred CC-CCCcHHHHHHHHHHHHHh-C-----CHhHHHHHHHHHHcccC
Q 005802 555 IP-TEEDAVILGSFLNVCRLN-R-----NAELAGEAEEKLLRLEG 592 (676)
Q Consensus 555 ~~-~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p 592 (676)
.. .++++..+..+...|... | +.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 335677777787777643 2 89999999999987643
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=4.5e-08 Score=92.60 Aligned_cols=191 Identities=12% Similarity=0.028 Sum_probs=124.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILS 501 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 501 (676)
+...+..+...+.+.|++++|...|++.. .| +...|..+..++...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34455566677777777777777777664 23 5667777888888888888888888887764 34 4567777778
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPET-DHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 580 (676)
++...|++++|...|++.... .|+. ..+...+....+..+...... ......+++......+... ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 888888888888888877643 2221 111111221111111111111 2222334444444444332 36889999
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAE-GNWAEMGRIRKQMRGM 624 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 624 (676)
.+.++++.+..|++......+...+.+. +++++|.++|+.+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998877777887777776 7789999999888663
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=1e-07 Score=79.86 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=85.0
Q ss_pred CCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHH
Q 005802 490 KPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILG 565 (676)
Q Consensus 490 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 565 (676)
.|+ ...+..+...+.+.|++++|...|+++... .|+ ...|..+..+|...|++++|++.|+++. .+.++..|.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 443 345666777888899999999999988753 455 7888889999999999999999998887 555778888
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999988753
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=9.6e-05 Score=75.51 Aligned_cols=365 Identities=9% Similarity=-0.061 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCCC-cHhHHHHHHHH
Q 005802 193 ISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGD-AEEGLKLFVRMGEN-GVRW-NEHTFASALSA 268 (676)
Q Consensus 193 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~ 268 (676)
.+|...+..+-. |+++.+..+|++... .|++..|..-+....+.+. .+....+|+..... |..| +...|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 345555555544 778888888866543 5677777777776665553 34556666666543 4333 33444444444
Q ss_pred HhC----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 005802 269 CCG----LRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEA 344 (676)
Q Consensus 269 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (676)
+.. .++.+.+..+|+.++......-...|......- +......+..++.... +.+..|
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~-----------------~~y~~a 156 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL-----------------PIFQSS 156 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH-----------------HHHHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh-----------------HHHHHH
Confidence 332 245667777777777632111111222211111 1111112222111100 111122
Q ss_pred HHHHhccCC----CCchhHHHHHHHHHHcC--C-----hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHH
Q 005802 345 RRHFDSLTE----KNVVVWTALFSGYVKAQ--N-----CEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKE 413 (676)
Q Consensus 345 ~~~~~~~~~----~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 413 (676)
..+++.+.. .+...|...+.--...+ - .+.+..+|++++.. .+.+...+...+.-+...|+.+.|..
T Consensus 157 r~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 157 FQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 222221111 12234444443322111 0 34566778876443 24446666666677778888888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHhhcC--C-------C---CcchHHHHHHHHHHcCChhHHHHH
Q 005802 414 IHAYILRMGVQMDKKLISTLVDMYSKCGNMTYA-EIIFQNFI--E-------R---DLVLYNVMIACYAHHGHEEKAILL 480 (676)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~---~~~~~~~l~~~~~~~~~~~~A~~~ 480 (676)
+++..... |.+...+.. |....+.++. ..+.+... . + ....|...+..+.+.+..+.|..+
T Consensus 235 i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i 308 (493)
T 2uy1_A 235 VVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL 308 (493)
T ss_dssp HHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888887 444333322 2221111111 11222110 0 0 124577777777778889999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhh-ccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 005802 481 FEEMLEKGIKPDAVTFVAILSAFR-HCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEE 559 (676)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 559 (676)
|++. .. ..++...|......-. ..++++.|..+|+...+.++- ++..+...++...+.|+.+.|..+|+++. .
T Consensus 309 ~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k 382 (493)
T 2uy1_A 309 FIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--K 382 (493)
T ss_dssp HHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--C
T ss_pred HHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--H
Confidence 9998 32 1223344432222111 234699999999999876432 24556778888889999999999999984 4
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
....|...+..-...|+.+.+..+++++.+.
T Consensus 383 ~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 383 TSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5778888888888899999999999988853
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=7e-07 Score=85.76 Aligned_cols=163 Identities=9% Similarity=-0.074 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC----C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--Cc
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGVQ----M-DKKLISTLVDMYSKCGNMTYAEIIFQNFIE-------R--DL 458 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~ 458 (676)
..|......+...|++++|...+....+.... + -..++..+..+|...|++++|...|++... + -.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35666667777788888888887776653211 1 134667777788888888888777765431 1 12
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-C----HhHHHHHHHHhhccCcHHHHHHHHHHchhhc---CCCCC-H
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-D----AVTFVAILSAFRHCGSVEMGEKYFNSMTADY---KISPE-T 529 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~ 529 (676)
.++..+...|.. |++++|+..|++..+..... + ..++..+...+...|++++|...|++..... +..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 356677777777 88888888888776521100 1 3466677778888888888888888776431 11111 2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
..+..++.++...|++++|...+++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 355566677777788888888887765
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=1.6e-07 Score=76.46 Aligned_cols=96 Identities=8% Similarity=-0.024 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc-------cHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA-------RYV 599 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~ 599 (676)
...+..+...+.+.|++++|++.|+++. .+.+...|..+..+|...|++++|+..+++++++.|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4456677888888888888888888877 4556778888888889999999999999999888777654 566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 600 QLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.++.+|...|++++|++.+++..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7778888889999999998887653
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=1.6e-07 Score=80.64 Aligned_cols=107 Identities=15% Similarity=-0.007 Sum_probs=84.2
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLN 569 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 569 (676)
...+..+...+...|++++|...|++.... .| +...|..+..+|.+.|++++|+..+++.. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456677777888888888888888888754 34 37778888888888888888888888877 4556778888888
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCCccHHHHH
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNKARYVQLA 602 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 602 (676)
++...|++++|+..+++++++.|+++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888888888888888888888877555444
No 137
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.58 E-value=2e-05 Score=80.49 Aligned_cols=216 Identities=13% Similarity=0.111 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 005802 241 EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLK 320 (676)
Q Consensus 241 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 320 (676)
+.+..+|+++... .+-+...|...+..+...|+++.|..+++..... +.+...+. .|....+.+..
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~------- 261 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV------- 261 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH-------
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH-------
Confidence 3456677777663 2334555666666667778888888888888877 33332222 12221111111
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHH
Q 005802 321 GVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLG 400 (676)
Q Consensus 321 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 400 (676)
+..+...+.. ...+.+.. .........|-..+....+.+..+.|..+|... ...+ .+...|.....
T Consensus 262 -------~~~l~~~~~~-~~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~ 327 (493)
T 2uy1_A 262 -------YGDLKRKYSM-GEAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAF 327 (493)
T ss_dssp -------HHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHH
T ss_pred -------HHHHHHHHHh-hccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHH
Confidence 1111111100 00000000 000001234555666666677788888888875 3222 23333332221
Q ss_pred HHHh-hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHH
Q 005802 401 ACAL-QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAIL 479 (676)
Q Consensus 401 ~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 479 (676)
.-.. .++.+.|..+++...+.- +.++..+...++...+.|+.+.|..+|+.+.+ ....|...+..-...|+.+.+.+
T Consensus 328 lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 328 IEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHH
Confidence 1122 236888888888887753 33445556677777788888888888888743 45667777777777788888888
Q ss_pred HHHHHHH
Q 005802 480 LFEEMLE 486 (676)
Q Consensus 480 ~~~~m~~ 486 (676)
+++++.+
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=3.7e-07 Score=75.57 Aligned_cols=99 Identities=10% Similarity=-0.058 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
+...+..+...+...|++++|+..|++.. .+.++..+..+..++...|++++|+..++++++.+|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 46777888888888888888888888776 4556778888888888999999999999999999999888999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 005802 606 AAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~~ 626 (676)
...|++++|...+++..+..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHCh
Confidence 999999999999988876543
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=4.1e-07 Score=72.80 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+...|++++|...+++.. .+.++..+..+..++...|++++|...++++.+..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555666666666666666666654 33355566666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 677777777666666554
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=4.2e-06 Score=79.68 Aligned_cols=158 Identities=12% Similarity=-0.008 Sum_probs=120.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---cc------hHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HhHHHH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIERD---LV------LYNVMIACYAHHGHEEKAILLFEEMLEKGIK-PD----AVTFVA 498 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~~~---~~------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 498 (676)
.+..+...|++++|...+++..+.. .. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999998865321 11 2334666667778999999999999984322 22 226888
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhc----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------C-CCcHHHHH
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADY----KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-------T-EEDAVILG 565 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~~~~~~~~ 565 (676)
+..+|...|++++|..+++++.+.. +..|. ..++..+...|.+.|++++|++.+++.. . ..-..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999987421 11222 4578899999999999999999998776 1 11256788
Q ss_pred HHHHHHHHhC-CHhHHHHHHHHHHcc
Q 005802 566 SFLNVCRLNR-NAELAGEAEEKLLRL 590 (676)
Q Consensus 566 ~l~~~~~~~~-~~~~a~~~~~~~~~~ 590 (676)
.++.++...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8889999999 469999999999876
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=8.5e-08 Score=80.56 Aligned_cols=104 Identities=9% Similarity=-0.071 Sum_probs=87.8
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLN 569 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 569 (676)
...+..+...+...|++++|...|+..... .| +...|..+..+|...|++++|++.++++. .+.++..+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 445666777888999999999999988754 45 47888889999999999999999999887 4567788889999
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
++...|++++|+..++++++..|+++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999999998876543
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=9.8e-07 Score=81.07 Aligned_cols=184 Identities=9% Similarity=-0.072 Sum_probs=124.5
Q ss_pred hcCCHHHHHHHHhhcCC--C-CcchHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCCH---------------
Q 005802 439 KCGNMTYAEIIFQNFIE--R-DLVLYNVM-------IACYAHHGHEEKAILLFEEMLEKGIKPDA--------------- 493 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--------------- 493 (676)
..++...|.+.|.++.. | ....|..+ ...+.+.++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777776652 2 34466665 3455555555555555544433 23321
Q ss_pred -------hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcH----H
Q 005802 494 -------VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDA----V 562 (676)
Q Consensus 494 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 562 (676)
.....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233456677888999999988888642 465336666677888889999999988876633332 3
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHccc--CC-CCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLE--GN-NKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...++++....+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 56677778888899999999999887543 44 3456778888889999999999999888876554
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.1e-06 Score=78.40 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=83.7
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhc---CCCCC-HHHHHHHHHHHhhcCCH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADY---KISPE-TDHYACMIDLYGRANQL 545 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~ 545 (676)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..... +..|. ...+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555666553333322 111223455555555666666666666665554311 11222 44555666666666776
Q ss_pred HHHHHHHHhCC----CCC-c----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC--C----CccHHHHHHHHHhcCC
Q 005802 546 EKAIEFMKSIP----TEE-D----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN--N----KARYVQLANVYAAEGN 610 (676)
Q Consensus 546 ~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 610 (676)
++|.+.+++.. ..+ + ...+..+...+...|++++|...++++.+..+. + ...+..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 66666665544 111 1 224555666677777777777777777655221 1 1124677777777888
Q ss_pred hhHHHHHHHHHHh
Q 005802 611 WAEMGRIRKQMRG 623 (676)
Q Consensus 611 ~~~A~~~~~~~~~ 623 (676)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776654
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=7.1e-07 Score=72.20 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999887 45577888899999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 005802 607 AEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~~ 626 (676)
..|++++|...++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999886543
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.50 E-value=4.2e-07 Score=75.79 Aligned_cols=108 Identities=9% Similarity=-0.070 Sum_probs=86.9
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
..+..+...+...|++++|...|+..... .|+ ...|..+..+|.+.|++++|+..++++. .+.++..+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34555666788889999999999888754 454 7788888889999999999999998877 55577788888899
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
+...|++++|+..++++++..|+++........+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999999999999887765544333
No 146
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=4.8e-05 Score=71.66 Aligned_cols=224 Identities=6% Similarity=0.032 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCHh-HHHHHHHHHHhhc--ChhHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---C
Q 005802 372 CEALFDLLSEFVTKEGVVTDAL-ILVILLGACALQA--ALHPGKEIHAYILRMGVQMDKKLISTLVDMY----SKC---G 441 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 441 (676)
.++|+..+..++.. .|+.. .++.--..+...+ +++++..++..+.... +-+..+++.-...+ ... +
T Consensus 49 s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 49 SERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp SHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 34666666655322 23322 2333333444445 6666666666666654 33344444333333 334 6
Q ss_pred CHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc------HH
Q 005802 442 NMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEE--KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS------VE 510 (676)
Q Consensus 442 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~ 510 (676)
+++++..+++.+. ..+..+|+--.-.+.+.|+++ ++++.++++++... -|...|+.-...+...|. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHH
Confidence 7888888888776 346667777777777788888 99999999998642 356667666556666666 89
Q ss_pred HHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHH-HHHHHHhCCC-----CCcHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 511 MGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEK-AIEFMKSIPT-----EEDAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
++++.++.+... .|+ ...|+.+..++.+.|+..+ +.++..+... +.++..+..++.++.+.|+.++|.++
T Consensus 204 eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 999999998854 455 8889888888888887544 5567777651 34778889999999999999999999
Q ss_pred HHHHHc-ccCCCCccHHHHHH
Q 005802 584 EEKLLR-LEGNNKARYVQLAN 603 (676)
Q Consensus 584 ~~~~~~-~~p~~~~~~~~l~~ 603 (676)
++.+.+ .+|.....|...+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999997 69988777766554
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=4.7e-07 Score=74.36 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
+...+..+...+.+.|++++|++.+++.. .+.+...+..+..++...|++++|+..++++.+..|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 37788899999999999999999999876 3447788899999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 005802 606 AAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~ 625 (676)
...|++++|.+.+++..+..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999988653
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=5.4e-07 Score=78.51 Aligned_cols=126 Identities=11% Similarity=0.107 Sum_probs=101.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHH-HhhcCCH-
Q 005802 469 AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDL-YGRANQL- 545 (676)
Q Consensus 469 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 545 (676)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|++.... .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45688899999998888753 335678888889999999999999999998754 34 47778888888 7789998
Q ss_pred -HHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 546 -EKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 546 -~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
++|...++++. .+.+...+..+..++...|++++|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999887 455678888999999999999999999999999999886544
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=6.5e-07 Score=79.64 Aligned_cols=95 Identities=14% Similarity=-0.041 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
..+..+..+|.+.|++++|+..++++. .+.+...+..+..++...|++++|+..++++++..|.++..+..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 667788888899999999999988877 555778888899999999999999999999999999999999999999999
Q ss_pred cCChhHHH-HHHHHHHhC
Q 005802 608 EGNWAEMG-RIRKQMRGM 624 (676)
Q Consensus 608 ~g~~~~A~-~~~~~~~~~ 624 (676)
.|+.+++. ..++.|...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888777 555555443
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=1.3e-06 Score=69.66 Aligned_cols=110 Identities=15% Similarity=0.035 Sum_probs=85.4
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLN 569 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 569 (676)
...+..+...+...|++++|...++..... .| +...+..+...+...|++++|...+++.. .+.++..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566667777788888888888877653 33 46777778888888888888888888776 4456778888888
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
++...|++++|...++++.+..|+++..+..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 899999999999999999999998887777776654
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=6e-07 Score=73.00 Aligned_cols=110 Identities=8% Similarity=-0.087 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
..+..+...+...|++++|...|++.... .|+ ...|..+..++.+.|++++|++.+++.. .+.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34556666777888888888888877653 344 7778888888888888888888888776 45567788888888
Q ss_pred HHHhCCHhHHHHHHHHHHccc------CCCCccHHHHHHHHH
Q 005802 571 CRLNRNAELAGEAEEKLLRLE------GNNKARYVQLANVYA 606 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 606 (676)
+...|++++|+..++++++.+ |.++.....+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 889999999999999999888 777766666665543
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.7e-06 Score=72.56 Aligned_cols=110 Identities=12% Similarity=-0.026 Sum_probs=68.3
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
...+..+...+...|++++|...|+.... ..|+ ...+..+..+|...|++++|++.+++.. .+.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555556666666666666666652 3344 4555566666666666666666666654 3335556666
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
+..++...|++++|...++++++..|+++..+..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 666777777777777777777777777666655555543
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.47 E-value=7.8e-07 Score=76.11 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 561 AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 561 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
...+..+..++...|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567777788888889999999999998888988888899999999999999999888887754
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=1e-06 Score=75.61 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4445555555555555555555555554 33345555555555555555566666555555555555555555555555
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|++++|...+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 556655555555555443
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=8.9e-07 Score=72.29 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=56.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcH---HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC---CccHHHHHHHHH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDA---VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN---KARYVQLANVYA 606 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 606 (676)
+...+.+.|++++|.+.++++. .+.++ ..+..+..++...|++++|+..++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4455556666666666666554 22222 355556666666677777777777777666666 555666777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|++++|...++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777666654
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=8.5e-07 Score=72.44 Aligned_cols=99 Identities=12% Similarity=0.057 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
+...+..+...+...|++++|.+.++++. .+.+...+..+..++...|++++|+..++++.+..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 36778888999999999999999999887 4557888899999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 005802 606 AAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~~ 626 (676)
...|++++|...+++..+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999886533
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.44 E-value=2.1e-07 Score=76.86 Aligned_cols=93 Identities=15% Similarity=0.007 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCC-------------cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-------c
Q 005802 533 ACMIDLYGRANQLEKAIEFMKSIP-TEE-------------DAVILGSFLNVCRLNRNAELAGEAEEKLLRL-------E 591 (676)
Q Consensus 533 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~ 591 (676)
......+.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344444555555555555555544 112 1237888888888889999999999998888 9
Q ss_pred CCCCccH----HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 592 GNNKARY----VQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 592 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
|+++..| ..++.++...|++++|+..+++..+..
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999 999999999999999999999988753
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=4.6e-07 Score=80.64 Aligned_cols=120 Identities=11% Similarity=-0.000 Sum_probs=90.4
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCcH----------------H
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP-T-EEDA----------------V 562 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~----------------~ 562 (676)
.....|+++++.+.|+.-... .+ ....+..+...+.+.|++++|++.|++.. . +.++ .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344556666666666544322 12 25567777888888899999998888776 2 2232 6
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.+..+..++...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 78888889999999999999999999999999999999999999999999999999998765
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.4e-06 Score=72.99 Aligned_cols=98 Identities=7% Similarity=-0.006 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP-TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLA 602 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 602 (676)
+...+..+...+...|++++|++.+++.. ..|+ ...+..+..++...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 47788899999999999999999999887 4565 678888888999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 005802 603 NVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.+|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999988653
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=6.7e-07 Score=82.15 Aligned_cols=136 Identities=13% Similarity=-0.062 Sum_probs=104.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDL 538 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 538 (676)
+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 3456677888999999999998887643 65445555556788999999999999866431 1 221 3467788999
Q ss_pred HhhcCCHHHHHHHHHhCCCC---C--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHH
Q 005802 539 YGRANQLEKAIEFMKSIPTE---E--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
+.+.|++++|+..|++.... | ....+.....++...|+.++|...|+++...+|+ +.....|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 99999999999999988522 3 3346777788899999999999999999999998 6655555
No 161
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=5.1e-06 Score=79.09 Aligned_cols=161 Identities=12% Similarity=-0.012 Sum_probs=115.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--C-Cc------chHHHHHHHHHHcCChhHHHHHHHHHHHCCCC---CC--HhH
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIE--R-DL------VLYNVMIACYAHHGHEEKAILLFEEMLEKGIK---PD--AVT 495 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~---p~--~~~ 495 (676)
+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456667778888888777765431 1 11 12334556667788999999999988763211 11 347
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHch---hhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-------cHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMT---ADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-------DAV 562 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~~ 562 (676)
++.+...|...|++++|..++++.. +..+..+. ..++..+...|.+.|++++|++.+++.. ..+ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7888889999999999999999886 32121222 2578889999999999999999998875 111 256
Q ss_pred HHHHHHHHHHHhCCHhHH-HHHHHHHHcc
Q 005802 563 ILGSFLNVCRLNRNAELA-GEAEEKLLRL 590 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 590 (676)
++..++.++...|++++| ...++++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 778888899999999999 8888888765
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.38 E-value=2.4e-06 Score=76.21 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=102.0
Q ss_pred hcCCHHHHHH---HHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHhHHHHHHHHhhccCcHH
Q 005802 439 KCGNMTYAEI---IFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLE----KGIKP-DAVTFVAILSAFRHCGSVE 510 (676)
Q Consensus 439 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~ 510 (676)
..|++++|.+ .+...+.....++..+...+...|++++|...+++..+ .|..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777776 44443333445677777778888888888888877665 22122 2345667777888888888
Q ss_pred HHHHHHHHchhh---cCCCC-C-HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCc----HHHHHHHHHHHHHhCCH
Q 005802 511 MGEKYFNSMTAD---YKISP-E-TDHYACMIDLYGRANQLEKAIEFMKSIP----TEED----AVILGSFLNVCRLNRNA 577 (676)
Q Consensus 511 ~a~~~~~~~~~~---~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~ 577 (676)
+|...+++.... .+-.| . ...+..+...+...|++++|...+++.. ..++ ..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888876543 12122 1 4557778888888899998888887765 1122 22456777788889999
Q ss_pred hHHHHHHHHHHcc
Q 005802 578 ELAGEAEEKLLRL 590 (676)
Q Consensus 578 ~~a~~~~~~~~~~ 590 (676)
++|...++++.++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988876
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=1.4e-06 Score=72.00 Aligned_cols=100 Identities=10% Similarity=-0.043 Sum_probs=80.4
Q ss_pred CCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHH
Q 005802 491 PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSF 567 (676)
Q Consensus 491 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 567 (676)
.+...+..+...+...|++++|...|+..... .|+ ...+..+..++...|++++|+..+++.. .+.++..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34667777777888888888888888887654 344 7778888888888888888888888876 45567788888
Q ss_pred HHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 568 LNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 568 ~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
..++...|++++|+..++++++..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88899999999999999999988777
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.36 E-value=2.9e-06 Score=86.34 Aligned_cols=96 Identities=20% Similarity=0.097 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...|..+..+|.+.|++++|+..++++. .+.+...+..+..+|...|++++|+..|+++++++|++...+..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5678889999999999999999999887 55678889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHH-HHHHHHhC
Q 005802 607 AEGNWAEMGR-IRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~-~~~~~~~~ 624 (676)
..|++++|.+ .++.|...
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998874 56666543
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=2.5e-06 Score=73.12 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+...|++++|...+++.. .+.+...+..+..++...|++++|+..++++++..|.++..+..++.+|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567778889999999999999999887 45578889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 005802 607 AEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~~ 626 (676)
..|++++|...++++.+..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhccHHHHHHHHHHHHHhCC
Confidence 99999999999999987654
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=1.5e-06 Score=70.86 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-------CccHHH
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-------KARYVQ 600 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 600 (676)
..+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|.+ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 445555666666666666666666654 33455566666666666777777777777776665554 556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
++.+|...|++++|.+.++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777776654
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=2.2e-06 Score=87.61 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=66.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQL 545 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 545 (676)
+.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|...+++..+. .|+ ...+..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCH
Confidence 44556667777777666663 33 3556666666677777777777777766532 343 56666677777777777
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHH--HHHhCCHhHHHHHHH
Q 005802 546 EKAIEFMKSIP--TEEDAVILGSFLNV--CRLNRNAELAGEAEE 585 (676)
Q Consensus 546 ~~A~~~~~~~~--~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 585 (676)
++|++.++++. .+.+...+..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777776665 23344444444444 666677777777777
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=9.3e-07 Score=85.96 Aligned_cols=148 Identities=11% Similarity=0.015 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLY 539 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 539 (676)
.+..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4555666666777777777777776652 344331 223344444332221 13677888999
Q ss_pred hhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH-HhcCChhHHHH
Q 005802 540 GRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY-AAEGNWAEMGR 616 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~ 616 (676)
.+.|++++|+..++++. .+.+...+..+..++...|++++|+..++++++++|+++..+..|..+. ...+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887 4557788889999999999999999999999999999999998888884 44567788888
Q ss_pred HHHHHHhCCCc
Q 005802 617 IRKQMRGMKGN 627 (676)
Q Consensus 617 ~~~~~~~~~~~ 627 (676)
.++.|.+..+.
T Consensus 321 ~~~~~l~~~p~ 331 (338)
T 2if4_A 321 MYKGIFKGKDE 331 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCCCC
Confidence 88888765543
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=8.3e-07 Score=90.70 Aligned_cols=118 Identities=8% Similarity=-0.031 Sum_probs=101.4
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR 575 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 575 (676)
+...+.+.|++++|.+.+++..+. .|+ ...|..+..+|.+.|++++|++.++++. .+.+...+..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344567889999999999999854 455 8899999999999999999999999987 4557788999999999999
Q ss_pred CHhHHHHHHHHHHcccCCCCccHHHHHHH--HHhcCChhHHHHHHH
Q 005802 576 NAELAGEAEEKLLRLEGNNKARYVQLANV--YAAEGNWAEMGRIRK 619 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 619 (676)
++++|+..++++++..|+++..+..++.+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999988 889999999999988
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.30 E-value=4.2e-07 Score=72.76 Aligned_cols=82 Identities=12% Similarity=-0.017 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHhCC-C---CC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 542 ANQLEKAIEFMKSIP-T---EE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
.|++++|+..|++.. . .| +...+..+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 344455555554444 1 12 233444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 005802 617 IRKQMRG 623 (676)
Q Consensus 617 ~~~~~~~ 623 (676)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=2.4e-06 Score=68.61 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=72.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR 572 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 572 (676)
+..+...+.+.|++++|...+++..+. .|+ ...|..+..++...|++++|+..++++. .+.+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445556677888888888888888754 454 7778888888888888888888888877 4456778888888888
Q ss_pred HhCCHhHHHHHHHHHHcccCCCC
Q 005802 573 LNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
..|++++|+..++++++.+|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999998888754
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=7e-05 Score=71.30 Aligned_cols=191 Identities=6% Similarity=0.019 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHhhcCC---CCcchHHHHHHHHHHc-C-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 005802 430 ISTLVDMYSKCG-NMTYAEIIFQNFIE---RDLVLYNVMIACYAHH-G-HEEKAILLFEEMLEKGIKPDAVTFVAILSAF 503 (676)
Q Consensus 430 ~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 503 (676)
++.--..+...| .+++++..++.+.. .+..+|+.-...+.+. + ++++++++++++.+.. +-|...|+.-...+
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl 169 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 333333333344 35555555555442 2333444444444443 4 5566666666666532 12344444333333
Q ss_pred hccCcHH--------HHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCC-------HHHHHHHHHhCC--CCCcHHHHHH
Q 005802 504 RHCGSVE--------MGEKYFNSMTADYKISPETDHYACMIDLYGRANQ-------LEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 504 ~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
.+.|.++ ++++.++++.+. . .-|...|+....++.+.++ ++++++.++++. .+.|...|..
T Consensus 170 ~~l~~~~~~~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Y 247 (349)
T 3q7a_A 170 SHFSTLGRISEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNY 247 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhccccccchhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3333333 666666666643 1 2235666666666666554 566777766665 4556666666
Q ss_pred HHHHHHHhCCH--------------------hHHHHHHHHHHccc------CCCCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 567 FLNVCRLNRNA--------------------ELAGEAEEKLLRLE------GNNKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 567 l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+-..+...|.. .........+.... +.++.....|+++|...|+.++|.++++.
T Consensus 248 lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~ 327 (349)
T 3q7a_A 248 LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEK 327 (349)
T ss_dssp HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66666555443 22223322222222 45566778899999999999999999998
Q ss_pred HHh
Q 005802 621 MRG 623 (676)
Q Consensus 621 ~~~ 623 (676)
+.+
T Consensus 328 l~~ 330 (349)
T 3q7a_A 328 LSS 330 (349)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.26 E-value=4.6e-06 Score=78.67 Aligned_cols=113 Identities=8% Similarity=-0.073 Sum_probs=92.6
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHH
Q 005802 492 DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFL 568 (676)
Q Consensus 492 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 568 (676)
+...+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|++.++++. .+.+...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566777888889999999999999998754 45 47888899999999999999999999877 445677888888
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.++...|++++|+..++++.+..|+++..+..+++...+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 118 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence 899999999999999999999988876666555555443
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.6e-05 Score=80.64 Aligned_cols=163 Identities=8% Similarity=-0.128 Sum_probs=104.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCH----hHHHHHHHHhhccCcHHHHHHHHHHchhh---cCCCCC-HHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEK-GIKPDA----VTFVAILSAFRHCGSVEMGEKYFNSMTAD---YKISPE-TDH 531 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 531 (676)
+..+...|...|++++|.+.+.++... +..++. ...+.+-..+...|+++.|..+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777777788888888777776541 111111 12233334455667888888777765431 122333 566
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-------CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC---CC----Cc
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-------TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG---NN----KA 596 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~----~~ 596 (676)
+..++..|...|++++|..++++.. ..+ ...++..++..|...|++++|..+++++....+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7778888888888888888877654 112 234666777788888888888888888876632 21 23
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 597 RYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456667777788888888877766644
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=3.1e-06 Score=83.15 Aligned_cols=89 Identities=9% Similarity=-0.075 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...|..+..+|.+.|++++|++.++++. .+.+...+..+..++...|++++|+..+++++++.|+++..+..++.++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6788889999999999999999999887 34467788899999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHH
Q 005802 607 AEGNWAEMGRI 617 (676)
Q Consensus 607 ~~g~~~~A~~~ 617 (676)
..++.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 176
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=8e-06 Score=79.27 Aligned_cols=128 Identities=7% Similarity=-0.009 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHhhccCcHHHHHHHHHHchh
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD----------------AVTFVAILSAFRHCGSVEMGEKYFNSMTA 521 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 521 (676)
...|..+...+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|...+++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666777777788888888888887774 333 36788888888899999999999998875
Q ss_pred hcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHH-HHHHHHHHcc
Q 005802 522 DYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELA-GEAEEKLLRL 590 (676)
Q Consensus 522 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 590 (676)
. .|+ ...|..+..+|...|++++|+..|+++. .+.+...+..+..++...|++++| ...++++...
T Consensus 225 ~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 225 L---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 454 7888888999999999999999998887 455677888888888888888888 4566666543
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.22 E-value=1.4e-06 Score=69.68 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=68.9
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE 582 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 582 (676)
.|++++|...|++..+...-.|+ ...+..+..+|.+.|++++|++.++++. .+.++..+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777888888877642000244 6677788888888888888888888877 45567788888888899999999999
Q ss_pred HHHHHHcccCCCCccHH
Q 005802 583 AEEKLLRLEGNNKARYV 599 (676)
Q Consensus 583 ~~~~~~~~~p~~~~~~~ 599 (676)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999988888765543
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=7.2e-06 Score=64.58 Aligned_cols=101 Identities=10% Similarity=0.004 Sum_probs=71.8
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC--cHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEE--DAVILGSFL 568 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~ 568 (676)
...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++.. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 344555666677777777777777777643 12236667777777778888888888777766 333 466777777
Q ss_pred HHHHHh-CCHhHHHHHHHHHHcccCCCC
Q 005802 569 NVCRLN-RNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 569 ~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.++... |++++|.+.++++.+..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 788888 888888888888888877654
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=3.4e-06 Score=68.44 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=59.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----c----HHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE----D----AVIL 564 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~----~~~~ 564 (676)
.+..+...+.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|++.+++.. ..| + ..++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3445555666666666666666666532 344 5556666666666666666666666554 111 1 1245
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
..++.++...|++++|+..++++++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 56666777788888888888888776664
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.21 E-value=1.8e-05 Score=64.26 Aligned_cols=102 Identities=11% Similarity=-0.022 Sum_probs=70.2
Q ss_pred HHHHHhhccCcHHHHHHHHHHchhhcCCCCC-H---HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCc---HHHHHHHH
Q 005802 498 AILSAFRHCGSVEMGEKYFNSMTADYKISPE-T---DHYACMIDLYGRANQLEKAIEFMKSIP--TEED---AVILGSFL 568 (676)
Q Consensus 498 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~ 568 (676)
.+...+...|++++|...|+.+... .|+ . ..+..+..++.+.|++++|+..++++. .+.+ +..+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445566677777777777777654 233 2 466667777777777777777777765 2333 55677777
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHH
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLA 602 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 602 (676)
.++...|++++|...++++++..|+++.......
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 7888888888888888888888887765544443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.20 E-value=2.4e-06 Score=73.03 Aligned_cols=78 Identities=19% Similarity=0.058 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC-ccHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK-ARYVQLANVY 605 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 605 (676)
...|..+..+|.+.|++++|+..++++. .+.+...+..++.++...|++++|...++++++++|+++ .+...|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5678888999999999999999998887 556788899999999999999999999999999999987 5555555444
Q ss_pred H
Q 005802 606 A 606 (676)
Q Consensus 606 ~ 606 (676)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=5.6e-07 Score=71.17 Aligned_cols=94 Identities=9% Similarity=-0.094 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC------CccH
Q 005802 527 PETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------KARY 598 (676)
Q Consensus 527 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 598 (676)
++...+..+...+.+.|++++|++.+++.. .+.++..+..+..++...|++++|+..++++++..|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 345677788889999999999999998877 55578888899999999999999999999999999998 7778
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
..++.++...|++++|.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 8888888888888877666554
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=4.5e-06 Score=68.04 Aligned_cols=110 Identities=10% Similarity=-0.061 Sum_probs=71.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C----CCc----HHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-T----EED----AVILG 565 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~ 565 (676)
.+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...++++. . .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455555666666666666666666543 12235566666667777777777777766655 1 112 55677
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.+..++...|++++|...++++.+..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777788888888888888888888777 46666666555443
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=2.6e-06 Score=72.65 Aligned_cols=129 Identities=18% Similarity=0.076 Sum_probs=84.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC----cHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP----TEE----DAV 562 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~ 562 (676)
++..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555566666666666666655432110111 2356667777777777777777776654 111 133
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCC------CCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGN------NKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+..+..++...|++++|...++++++..+. .+..+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777788888888888888888776322 134678889999999999999999988765
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.00024 Score=67.36 Aligned_cols=178 Identities=10% Similarity=-0.017 Sum_probs=112.2
Q ss_pred HHHHHHHHhhcC---CCCcchHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc-HHHHHHHH
Q 005802 443 MTYAEIIFQNFI---ERDLVLYNVMIACYAHHG--HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS-VEMGEKYF 516 (676)
Q Consensus 443 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 516 (676)
++++..+++.+. ..+..+|+--.-.+...+ .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344555555443 234556665555555656 3677788888777743 2255556555555556666 57777777
Q ss_pred HHchhhcCCCCC-HHHHHHHHHHHhhc--------------CCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh-----
Q 005802 517 NSMTADYKISPE-TDHYACMIDLYGRA--------------NQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN----- 574 (676)
Q Consensus 517 ~~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 574 (676)
+.+.+. .|+ ...|+....++.+. +.++++++.+.+.. .+.|...|..+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 777754 233 66666555555444 44677888887776 555777777665555444
Q ss_pred ------CCHhHHHHHHHHHHcccCCCCccHHHHHHHH---HhcCChhHHHHHHHHHHhC
Q 005802 575 ------RNAELAGEAEEKLLRLEGNNKARYVQLANVY---AAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 575 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 624 (676)
+.++++++.+++++++.|++.-.+..++.+. ...|..++....+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578899999999999998754444433322 2357777888888888764
No 186
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.09 E-value=0.0013 Score=62.63 Aligned_cols=228 Identities=9% Similarity=-0.005 Sum_probs=151.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHHhhc-ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-CH
Q 005802 368 KAQNCEALFDLLSEFVTKEGVVTD-ALILVILLGACALQA-ALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC-G-NM 443 (676)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 443 (676)
+.+..++|++++.+++.. .|+ ...++.--..+...+ .++++..++..+.... +-+..+++.-..++.+. + ++
T Consensus 66 ~~e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred hCCCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 344556777777776433 233 333444444445555 4777888887777655 45566676666666665 6 78
Q ss_pred HHHHHHHhhcCCC---CcchHHHHHHHHHHcCChh--------HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc----
Q 005802 444 TYAEIIFQNFIER---DLVLYNVMIACYAHHGHEE--------KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS---- 508 (676)
Q Consensus 444 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 508 (676)
+++.++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 8899999888754 4445555444444445555 8999999999864 3366777777777777765
Q ss_pred ---HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCH--------------------HHHHHHHHhCC-C------
Q 005802 509 ---VEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQL--------------------EKAIEFMKSIP-T------ 557 (676)
Q Consensus 509 ---~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~------ 557 (676)
++++++.++++... .|+ ...|+.+-..+.+.|+. .+..++..++. .
T Consensus 221 ~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred hHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 78899999888754 455 77787777777776653 44555555554 1
Q ss_pred -CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH-cccCCCCccHHHHHH
Q 005802 558 -EEDAVILGSFLNVCRLNRNAELAGEAEEKLL-RLEGNNKARYVQLAN 603 (676)
Q Consensus 558 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 603 (676)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 3577788999999999999999999999997 558876665555443
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.06 E-value=7.3e-06 Score=67.68 Aligned_cols=74 Identities=8% Similarity=-0.041 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-C-------CC-cHHHH----HHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-T-------EE-DAVIL----GSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.|..+..++.+.|++++|+..+++.. . .| +...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 77777888888888888877777665 4 55 45577 888999999999999999999999999999888
Q ss_pred HHHHHHH
Q 005802 598 YVQLANV 604 (676)
Q Consensus 598 ~~~l~~~ 604 (676)
..-+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 7666544
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.04 E-value=1.5e-05 Score=61.27 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 558 EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+.++..+..+..++...|++++|+..++++++.+|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4467788888889999999999999999999999999999999999999999999999999888754
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.04 E-value=2.8e-06 Score=70.04 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=63.7
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCC----------HhHHHHHHHHHHcccCCCCccHHHHHHHHHhc
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRN----------AELAGEAEEKLLRLEGNNKARYVQLANVYAAE 608 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 608 (676)
+.+.+++|++.+++.. .+.+...|..+..++...++ +++|+..|+++++++|+++.+|..|+.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445566666666555 34455666666666655554 45899999999999999999999999999887
Q ss_pred C-----------ChhHHHHHHHHHHhCCCc
Q 005802 609 G-----------NWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 609 g-----------~~~~A~~~~~~~~~~~~~ 627 (676)
| ++++|++.+++..+..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 4 899999999988876553
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=2.7e-05 Score=79.18 Aligned_cols=98 Identities=11% Similarity=-0.001 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCc---------------HHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEED---------------AVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
...+..+...+.+.|++++|+..|+++. .+.+ ...|..+..++...|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4455556666666666666666666655 1122 4688889999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 592 GNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 592 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
|+++..|..++.+|...|++++|+..++++.+..+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999987644
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.02 E-value=1.8e-05 Score=59.47 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+.+.|++++|++.+++.. .+.+...+..+..++...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5667777888888888888888888776 44567778888888888999999999999999889988888888888877
Q ss_pred hcC
Q 005802 607 AEG 609 (676)
Q Consensus 607 ~~g 609 (676)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=2.6e-05 Score=76.53 Aligned_cols=66 Identities=8% Similarity=-0.065 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+...|..+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999988653
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=6.1e-05 Score=76.30 Aligned_cols=158 Identities=9% Similarity=0.002 Sum_probs=116.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPD----------------AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET 529 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 529 (676)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888776432211 1236778889999999999999999887543333332
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc------
Q 005802 530 ----DHYACMIDLYGRANQLEKAIEFMKSIP-------TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLE------ 591 (676)
Q Consensus 530 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 591 (676)
.+.+.+...+...|++++|.++++... ..+ ...++..++..+...|++++|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 233444455566789999998887764 122 34577788899999999999999999988662
Q ss_pred CCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 592 GNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 592 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
|.....+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22244788999999999999999999998865
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=2.1e-05 Score=66.74 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIK-PD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TD 530 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 530 (676)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455556666667777777776665542100 11 135566666777778888887777776432111111 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP----TEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 592 (676)
.+..+...+...|++++|.+.+++.. ..+ ....+..+...+...|++++|...++++.+...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56677777888888888888877665 111 233566777788888999999999988887643
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.98 E-value=1e-05 Score=64.22 Aligned_cols=77 Identities=8% Similarity=0.041 Sum_probs=55.9
Q ss_pred HHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 548 AIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 548 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
|++.+++.. .+.++..+..+..++...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555443 33456677777777777888888888888888888877777888888888888888888888777654
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00016 Score=75.15 Aligned_cols=167 Identities=7% Similarity=-0.076 Sum_probs=132.7
Q ss_pred HHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC--
Q 005802 443 MTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGH----------EEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG-- 507 (676)
Q Consensus 443 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-- 507 (676)
.++|.+.++.+.. | +..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4566777776652 2 44566666666666666 899999999999853 235677877777788888
Q ss_pred cHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh---------
Q 005802 508 SVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRAN-QLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN--------- 574 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------- 574 (676)
+++++++.++++.+. .| +...|+.-..++.+.| .++++++.++++. .+.+...|.....++...
T Consensus 124 ~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999865 34 4888888888888888 8999999999988 455788888888877663
Q ss_pred -----CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 575 -----RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 575 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
+.++++++.+.++++.+|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=1.1e-05 Score=78.23 Aligned_cols=151 Identities=9% Similarity=-0.031 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG 507 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 507 (676)
..+..+...+.+.|++++|...|++....+.... .+...++..++...+. ...|..+..+|.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4567788889999999999999998653221111 1122333334332221 136777888899999
Q ss_pred cHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHH-HHHhCCHhHHHHH
Q 005802 508 SVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNV-CRLNRNAELAGEA 583 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~~~a~~~ 583 (676)
++++|...+++.... .|+ ...|..+..+|...|++++|+..|+++. ..| +...+..+... ....+..+.+...
T Consensus 245 ~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998754 454 7888899999999999999999999987 444 45555555555 3455678888999
Q ss_pred HHHHHcccCCCCc
Q 005802 584 EEKLLRLEGNNKA 596 (676)
Q Consensus 584 ~~~~~~~~p~~~~ 596 (676)
+++++...|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.94 E-value=1.3e-05 Score=81.12 Aligned_cols=123 Identities=7% Similarity=-0.080 Sum_probs=89.9
Q ss_pred hhccCcHHHHHHHHHHchhhc--CC---CCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC------CCC----cHHHHHH
Q 005802 503 FRHCGSVEMGEKYFNSMTADY--KI---SPE-TDHYACMIDLYGRANQLEKAIEFMKSIP------TEE----DAVILGS 566 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~~~~ 566 (676)
+...|++++|..++++..+.. -+ .|+ ..+++.|..+|...|++++|+.++++.. ..| -..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446677777777776654321 11 233 5677788888888888888888877655 222 2336777
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcc-----cCCCCc---cHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRL-----EGNNKA---RYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+...|...|++++|+.++++++++ .|++|. ....|..++...|++++|...+++++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999988866 566554 45678888899999999999999998754
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.89 E-value=5.5e-05 Score=56.72 Aligned_cols=70 Identities=16% Similarity=-0.002 Sum_probs=61.7
Q ss_pred CCcHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 558 EEDAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
++++..+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|+..|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577788888888765554 799999999999999999999999999999999999999999999987664
No 200
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.87 E-value=0.00043 Score=65.60 Aligned_cols=186 Identities=8% Similarity=-0.031 Sum_probs=137.8
Q ss_pred hcCCH-HHHHHHHhhcCCCCc---chHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 005802 439 KCGNM-TYAEIIFQNFIERDL---VLYNVMIACYAHHGH----------EEKAILLFEEMLEKGIKPDAVTFVAILSAFR 504 (676)
Q Consensus 439 ~~g~~-~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 504 (676)
+.|.+ ++|..++..+...|+ .+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34444 467777777764433 344443333333222 678999999998853 335677776666666
Q ss_pred ccC--cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh-----
Q 005802 505 HCG--SVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ-LEKAIEFMKSIP--TEEDAVILGSFLNVCRLN----- 574 (676)
Q Consensus 505 ~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 574 (676)
..| .+++++.+++.+.+.. +-|...|+.-..++.+.|. ++++++.+.++. .+.+...|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 667 5899999999998652 3347888888888888888 699999999888 566888898887777655
Q ss_pred ---------CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCc
Q 005802 575 ---------RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAE-----------GNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 575 ---------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 627 (676)
+.++++++.+.+++..+|+|.++|.-+-.++.+. +.++++++.++++.+..+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 4588999999999999999999998887777776 4688999999999886653
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00013 Score=59.99 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=49.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh---
Q 005802 535 MIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA--- 607 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 607 (676)
|...|...+..++|+++|++.....++.....+...|.. .+++++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455555544433444455555555544 45666666666666544 345556666666666
Q ss_pred -cCChhHHHHHHHHHHhCCC
Q 005802 608 -EGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 608 -~g~~~~A~~~~~~~~~~~~ 626 (676)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 5666666666666655543
No 202
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.76 E-value=8.6e-05 Score=60.38 Aligned_cols=90 Identities=8% Similarity=-0.048 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHHHHhC---CHhHHHHHHHHHHccc-C-CCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCce
Q 005802 558 EEDAVILGSFLNVCRLNR---NAELAGEAEEKLLRLE-G-NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGC 632 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 632 (676)
+++..+...+.+++.+++ +.++++.+++.+.+.. | .+...++.|+-.|.+.|++++|+++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 345555555555555555 4446666666666554 4 33555666666666666666666666666542
Q ss_pred eEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 633 SWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
+|+..+.....+.++.++++.|.
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl 123 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGL 123 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhH
Confidence 55555555555666666666553
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=4.9e-05 Score=76.95 Aligned_cols=116 Identities=13% Similarity=0.024 Sum_probs=89.9
Q ss_pred HHHhhcCCHHHHHHHHHhCC------CCC-c---HHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-----cCCC---CccH
Q 005802 537 DLYGRANQLEKAIEFMKSIP------TEE-D---AVILGSFLNVCRLNRNAELAGEAEEKLLRL-----EGNN---KARY 598 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~------~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~ 598 (676)
..+..+|++++|+.++++.. ..| + ..+++.+..+|...|++++|+.+++++++. .|++ ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999887765 122 2 347788888999999999999999999876 4444 4468
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYE 670 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (676)
..|+.+|...|++++|..++++..+.-. +. .| ..||.+.++...+.+...++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-VT----------------HG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------TC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-HH----------------hC-CCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876321 11 12 4599999999998887765544
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.72 E-value=8.8e-05 Score=58.13 Aligned_cols=68 Identities=12% Similarity=-0.030 Sum_probs=62.6
Q ss_pred CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 559 EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++...+..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 35567888889999999999999999999999999999999999999999999999999999987654
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.72 E-value=3.4e-06 Score=81.16 Aligned_cols=84 Identities=6% Similarity=0.135 Sum_probs=42.8
Q ss_pred CCCcchHHHHH-HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH
Q 005802 455 ERDLVLYNVMI-ACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA 533 (676)
Q Consensus 455 ~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 533 (676)
+....-+..+. ..|.+++++.+++.+.+ ....|.-.+.....+|+.+-|.++++-..+. | +...|.
T Consensus 450 kHeL~eFRrIAA~LYkkn~rw~qsi~l~K---------kDklykDAietAa~S~~~elaeeLL~yFv~~-g---~~EcF~ 516 (624)
T 3lvg_A 450 KHELIEFRRIAAYLFKGNNRWKQSVELCK---------KDSLYKDAMQYASESKDTELAEELLQWFLQE-E---KRECFG 516 (624)
T ss_dssp TCSSHHHHHHHHHHHHTTCHHHHHSSCSS---------TTCCTTGGGTTTTTCCCTTHHHHHHHHHHHH-C---STHHHH
T ss_pred hCchHHHHHHHHHHHHhcccHHHHHHHHH---------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHc-C---chHHHH
Confidence 33433343332 33455566666654322 1222333444455666666666666666554 2 345555
Q ss_pred HHHHHHhhcCCHHHHHHH
Q 005802 534 CMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~ 551 (676)
..+-.|...=+++-++++
T Consensus 517 a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 517 ACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHhhccChHHHHHH
Confidence 555555555566666655
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.64 E-value=0.00013 Score=72.83 Aligned_cols=116 Identities=10% Similarity=0.105 Sum_probs=86.9
Q ss_pred HHHHhhcCCHHHHHHHHHhCC------CCC-c---HHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-----cCCC---Ccc
Q 005802 536 IDLYGRANQLEKAIEFMKSIP------TEE-D---AVILGSFLNVCRLNRNAELAGEAEEKLLRL-----EGNN---KAR 597 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~------~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~ 597 (676)
+..+.++|++++|++++++.. ..| + ..+++.++.+|...|++++|+.+++++++. .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444557788888888877653 122 2 336777888899999999999999988866 3444 446
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELY 669 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (676)
+..|+.+|...|++++|..++++..+.-. +. .| ..||.+.+++..|++....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VT----------------HG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------TC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hh----------------cC-CCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999876311 11 12 469999999999998887765
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=4e-05 Score=63.12 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=57.0
Q ss_pred CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC----------HHHHHHHHHhCC--CCCcHHHHHHHHHHHHH
Q 005802 507 GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ----------LEKAIEFMKSIP--TEEDAVILGSFLNVCRL 573 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 573 (676)
+.+++|...++...+. .|+ ...|..+..++...++ +++|+..|++.. .+.+...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455555555555432 343 5555555555555544 347777777766 44456677777777766
Q ss_pred h-----------CCHhHHHHHHHHHHcccCCCC
Q 005802 574 N-----------RNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 574 ~-----------~~~~~a~~~~~~~~~~~p~~~ 595 (676)
. |++++|+..|+++++++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 589999999999999999875
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00019 Score=56.70 Aligned_cols=80 Identities=13% Similarity=0.018 Sum_probs=57.0
Q ss_pred HHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 511 MGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
.|...|++..+ ..|+ ...+..+...|...|++++|+..+++.. .+.+...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556666553 3344 6677777777778888888888777766 4445667777778888888888888888888
Q ss_pred HcccCC
Q 005802 588 LRLEGN 593 (676)
Q Consensus 588 ~~~~p~ 593 (676)
++..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 877664
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.58 E-value=0.00095 Score=69.35 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=124.1
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCc----------HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHH
Q 005802 472 GHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGS----------VEMGEKYFNSMTADYKISPE-TDHYACMIDLY 539 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 539 (676)
...++|++.++++... .|+ ...|+.--.++...|+ +++++..++.+.+. .|. ..+|..-..++
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3467889999999984 565 4455554445555555 89999999999864 344 78888888889
Q ss_pred hhcC--CHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHcccCCCCccHHHHHHHHHhc------
Q 005802 540 GRAN--QLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR-NAELAGEAEEKLLRLEGNNKARYVQLANVYAAE------ 608 (676)
Q Consensus 540 ~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 608 (676)
.+.| ++++++++++++. .+.+...|..-..+....| .++++++.++++++.+|.+.++|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 7799999999998 6668889999888988989 899999999999999999999999999998874
Q ss_pred --------CChhHHHHHHHHHHhCCCc
Q 005802 609 --------GNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 609 --------g~~~~A~~~~~~~~~~~~~ 627 (676)
+++++|.+.++++....+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999888775543
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.57 E-value=0.00015 Score=54.18 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+...+..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456778888899999999999999999999999999999999999999999999999999988753
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.52 E-value=7.1e-05 Score=74.41 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHhCC------CCC-c---HHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-----cCCC---CccHHHHHH
Q 005802 542 ANQLEKAIEFMKSIP------TEE-D---AVILGSFLNVCRLNRNAELAGEAEEKLLRL-----EGNN---KARYVQLAN 603 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~------~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 603 (676)
.|++++|+.++++.. ..| + ..+++.+..+|...|++++|+.+++++++. .|++ ...++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 455666666655433 112 2 235667777778888888888888877755 3444 446889999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHH
Q 005802 604 VYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLA 662 (676)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (676)
+|..+|++++|..++++..+.-.+ . .| ..||.+.+++..|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~-~----------------lG-~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV-A----------------HG-KDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-H----------------TC-TTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH-H----------------cC-CCChHHHHHHHHHh
Confidence 999999999999999988763211 1 12 45998888887765
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.43 E-value=0.0018 Score=52.94 Aligned_cols=111 Identities=15% Similarity=0.012 Sum_probs=92.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHH
Q 005802 472 GHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEK 547 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 547 (676)
+++++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999887 33333 667788888899999999998664 357778888888888 789999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHccc
Q 005802 548 AIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 548 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 591 (676)
|+++|++.....++.....+...|.. .++.++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999998866788888889888888 899999999999998873
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.36 E-value=0.00039 Score=53.19 Aligned_cols=65 Identities=3% Similarity=-0.053 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
...+..+..+|.+.|++++|++.|+++. .+.++..|..+..++...|++++|+..+++++++.|.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 6677778888888888888888888776 4456677888888888888888888888888877554
No 214
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.33 E-value=0.001 Score=51.90 Aligned_cols=90 Identities=9% Similarity=-0.052 Sum_probs=61.3
Q ss_pred CCcHHHHHHHHHHHHHhCCHhH---HHHHHHHHHccc-C-CCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCce
Q 005802 558 EEDAVILGSFLNVCRLNRNAEL---AGEAEEKLLRLE-G-NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGC 632 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 632 (676)
.++..+-..+.+++.++++... ++.+++.+.+.. | ..-.....|+-.+.+.|+|++|+++++.+.+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~-------- 103 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 103 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------
Confidence 4566666666666666665444 777777766654 3 34456677777888888888888888877753
Q ss_pred eEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 633 SWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
+|...|......-++.+|.+.|.
T Consensus 104 ------------------eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 104 ------------------EPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHC--
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHhccC
Confidence 67777777777777788877763
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.27 E-value=0.00048 Score=52.47 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=47.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHH-HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAV-ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
....+.+.|++++|++.++++. .+.+.. .+..+..++...|++++|+..++++++.+|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4556677788888888887766 344556 777777777888888888888888888888776655
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.23 E-value=0.0013 Score=50.04 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=44.5
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCC-HH-HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhC
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPE-TD-HYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNR 575 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 575 (676)
...+...|++++|...++...+. .|+ .. .+..+..+|...|++++|++.|++.. ..| +...+.. +
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 33455566666666666666543 333 44 56666666666666666666666655 222 2222211 3
Q ss_pred CHhHHHHHHHHHHcccCCC
Q 005802 576 NAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p~~ 594 (676)
.+.++...+++.....|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4455555555555555443
No 217
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.22 E-value=0.0014 Score=63.42 Aligned_cols=394 Identities=10% Similarity=0.079 Sum_probs=212.8
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcC
Q 005802 24 TTITTNQLIHIYSKHNLLRESRKLFDEMPE--RNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAE 101 (676)
Q Consensus 24 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 101 (676)
|+..|..++.+..+.|.+++-...+.-.++ .++.+=+.|+-+|++.+++.+-++++. .||..--..+.+-|...|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~ 158 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEK 158 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHcc
Confidence 444455555555555555555555544433 333444455555555555444333222 244444455555555555
Q ss_pred CChhHHHHHHHHhHhc------------------cCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchh
Q 005802 102 GYEADALKLFIEMQSA------------------DEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAV 163 (676)
Q Consensus 102 ~~~~~a~~~~~~m~~~------------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (676)
.++ .|.-+|..+..- ...-.-++.||-.+-.+|...+.+..|.-.--.++-. ..-.
T Consensus 159 lYe-AAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL 232 (624)
T 3lvg_A 159 MYD-AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADEL 232 (624)
T ss_dssp CST-TSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCC
T ss_pred CHH-HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHH
Confidence 554 444443332110 0111335667888888888888777765444433333 3345
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCC--CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC---CC-------CeeeHHHHH
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTE--EVNLISKNAMVAACCREGEMEMALKTFWRQPE---LN-------DAVSWNTLI 231 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-------~~~~~~~li 231 (676)
..++..|-..|.+++-+.+++.-.. +....+++-|.-.|++- +.++..+-++..-. .| ....|.-++
T Consensus 233 ~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elv 311 (624)
T 3lvg_A 233 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 311 (624)
T ss_dssp SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence 6788888899999999999986553 45667778777777775 44444444433221 22 344577777
Q ss_pred HHHHhcCChhHHHHHH-------------HHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHH
Q 005802 232 SGYVQNGDAEEGLKLF-------------VRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSS 298 (676)
Q Consensus 232 ~~~~~~g~~~~a~~~~-------------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (676)
-.|.+-.+++.|.... .+... -.+|...|--.|..|.... +..--+++.-+. ..+ | .+
T Consensus 312 fLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~-prl--D---h~ 382 (624)
T 3lvg_A 312 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK-PLLLNDLLMVLS-PRL--D---HT 382 (624)
T ss_dssp HHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHC-TTC--C---ST
T ss_pred HHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHHHHHHHHHHHHHhC-hHHHHHHHHhcc-ccC--C---hH
Confidence 7777777776554321 11111 1234555555555554332 111112222111 011 1 11
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCchhHH-HHHHHHHhcCCHHHHHHHHhccCC------------CCchh-HHHHHH
Q 005802 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSIS-SMIVGYSLQGNMEEARRHFDSLTE------------KNVVV-WTALFS 364 (676)
Q Consensus 299 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~------------~~~~~-~~~li~ 364 (676)
..++.+.+.|++..+...+......|....| ++-..|....+++.-+...+.-.. ....- -.+-..
T Consensus 383 RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~ 462 (624)
T 3lvg_A 383 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAY 462 (624)
T ss_dssp TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHH
Confidence 3455666677777666666666555555444 455667777776655444333222 22222 233345
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 005802 365 GYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMT 444 (676)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (676)
.|.+.++|.+++.+.++ .+.-.| .|.....+++.+-+.++++...+.| +...|.+.+..|...=+++
T Consensus 463 LYkkn~rw~qsi~l~Kk----DklykD------AietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpD 529 (624)
T 3lvg_A 463 LFKGNNRWKQSVELCKK----DSLYKD------AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPD 529 (624)
T ss_dssp HHHTTCHHHHHSSCSST----TCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCH
T ss_pred HHHhcccHHHHHHHHHh----cccHHH------HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChH
Confidence 67778888888776643 222222 3444566788888888888888866 4455666666666666666
Q ss_pred HHHHH
Q 005802 445 YAEII 449 (676)
Q Consensus 445 ~A~~~ 449 (676)
-+.++
T Consensus 530 vVlEl 534 (624)
T 3lvg_A 530 VVLET 534 (624)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.0089 Score=56.82 Aligned_cols=137 Identities=9% Similarity=-0.023 Sum_probs=65.3
Q ss_pred CCcchHHHHHHHHH--HcC---ChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhc---cC-----cHHHHHHHHHHchh
Q 005802 456 RDLVLYNVMIACYA--HHG---HEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRH---CG-----SVEMGEKYFNSMTA 521 (676)
Q Consensus 456 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~---~g-----~~~~a~~~~~~~~~ 521 (676)
.+...|...+++.. ..+ ...+|..+|++.++ ..|+ ...+..+..+|.- .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35556666555432 222 34678888888877 3565 3344433333320 00 00011111111100
Q ss_pred hcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 522 DYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 522 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
....+.+..+|..+...+...|++++|...++++. ..|+...|..+...+...|++++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 00112235555555555555566666666665555 33454455555555556666666666666666665543
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.04 E-value=0.062 Score=41.82 Aligned_cols=141 Identities=8% Similarity=0.097 Sum_probs=99.7
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 547 (676)
+.-.|..++..++..+.... .+..-++-++--....-+-+-..++++..-+-+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34568888888888887763 244445555544445555566666776664332222 3455555
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 548 AIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 548 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
...-+-.+ ..+...++..+.....+|.-++-..++..+..-.|.+|+....++.+|.+.|+..+|.++++++-+.|++
T Consensus 80 Vi~C~~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555444 2445566667778889999999999999987777888999999999999999999999999999999985
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.02 E-value=0.0033 Score=59.79 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=97.0
Q ss_pred CCCCHhHHHHHHHHhh--cc---CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhh---cC-C-------HHHHHHH
Q 005802 489 IKPDAVTFVAILSAFR--HC---GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGR---AN-Q-------LEKAIEF 551 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~-------~~~A~~~ 551 (676)
.+.+...|...+++.. .. .+..+|..+|++..+. .|+ ...|..+..+|.- .+ . ...+.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 4556777888776643 22 3457899999999854 787 5566655554431 11 1 1122332
Q ss_pred HHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 552 MKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 552 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
...+. .+.++.++..+...+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.++++....+.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22233 4567778888877788889999999999999999974 667789999999999999999999999887663
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.00 E-value=0.017 Score=52.55 Aligned_cols=103 Identities=11% Similarity=0.004 Sum_probs=80.0
Q ss_pred HHHHHHHHHH-Hhhc--CC------HHHHHHHHHhCC-CCCc---HHHHHHHHHHHHH-----hCCHhHHHHHHHHHHcc
Q 005802 529 TDHYACMIDL-YGRA--NQ------LEKAIEFMKSIP-TEED---AVILGSFLNVCRL-----NRNAELAGEAEEKLLRL 590 (676)
Q Consensus 529 ~~~~~~l~~~-~~~~--g~------~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~ 590 (676)
...|..++.+ +... |. ..+|...++++. ..|+ ...+..++..|.. -|+.++|.+.|++++++
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L 233 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY 233 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh
Confidence 4556655543 2332 32 467777777776 4554 6688888888887 49999999999999999
Q ss_pred cCCC-CccHHHHHHHHHhc-CChhHHHHHHHHHHhCCCcccCc
Q 005802 591 EGNN-KARYVQLANVYAAE-GNWAEMGRIRKQMRGMKGNRFAG 631 (676)
Q Consensus 591 ~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 631 (676)
+|+. ...+..++..++.. |++++|.+.+++.....+...|+
T Consensus 234 nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 234 CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 9975 99999999999885 99999999999999987765454
No 222
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.97 E-value=0.011 Score=46.78 Aligned_cols=90 Identities=4% Similarity=-0.045 Sum_probs=63.1
Q ss_pred CCcHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCC-CCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCcee
Q 005802 558 EEDAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGN-NKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCS 633 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 633 (676)
.|.+.+--.+.+++.++.+ ..+++.+++.+....|. .-.....|+-.+.+.|+|++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4566666666677766654 34677777777766663 3445667777888888888888888877753
Q ss_pred EEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 634 WVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
+|...|......-++.++.+.|.
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGl 129 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETL 129 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhch
Confidence 67777777777777788877775
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.90 E-value=0.0026 Score=63.16 Aligned_cols=92 Identities=10% Similarity=-0.056 Sum_probs=62.0
Q ss_pred ccCcHHHHHHHHHHchhhc--CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC------CCC----cHHHHHHHH
Q 005802 505 HCGSVEMGEKYFNSMTADY--KIS---PE-TDHYACMIDLYGRANQLEKAIEFMKSIP------TEE----DAVILGSFL 568 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~~~~l~ 568 (676)
..|++++|..++++..+.. -+. |+ ..+++.|..+|...|++++|+.+++++. ..| -..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777776654321 122 33 5667778888888888888888877665 222 233677788
Q ss_pred HHHHHhCCHhHHHHHHHHHHcc-----cCCCCc
Q 005802 569 NVCRLNRNAELAGEAEEKLLRL-----EGNNKA 596 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~ 596 (676)
..|..+|++++|+.++++++++ .|++|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 8888888888888888888876 455543
No 224
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.81 E-value=0.004 Score=48.64 Aligned_cols=92 Identities=4% Similarity=-0.015 Sum_probs=71.9
Q ss_pred CCcHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCC-CCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCcee
Q 005802 558 EEDAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGN-NKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCS 633 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 633 (676)
.|.+.+--.+.+++.++++ ..+++.+++.+.+..|. .-..+..|+-.+.+.|++++|+++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--------- 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---------
Confidence 4566676777777777664 45788888888877763 3566788889999999999999999988753
Q ss_pred EEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005802 634 WVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAGAF 675 (676)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (676)
+|...|......-++.+|.|.|--+
T Consensus 108 -----------------eP~N~QA~~Lk~~Ie~ki~kd~~~~ 132 (134)
T 3o48_A 108 -----------------ERNNKQVGALKSMVEDKIQKEENLY 132 (134)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhhcccc
Confidence 8888888888889999998877543
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.75 E-value=0.0059 Score=60.79 Aligned_cols=99 Identities=8% Similarity=-0.031 Sum_probs=68.7
Q ss_pred HHHhhccCcHHHHHHHHHHchhhc--CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC------CCC----cHHH
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADY--KISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP------TEE----DAVI 563 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~ 563 (676)
+..+.+.|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++. ..| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556678888888887765321 12232 5677788888888888888888877665 222 2336
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcc-----cCCCCccH
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRL-----EGNNKARY 598 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~ 598 (676)
++.+...|...|++++|+.++++++++ .|++|.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 777888899999999999999988876 56665443
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.74 E-value=0.69 Score=48.01 Aligned_cols=113 Identities=10% Similarity=0.024 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAV----TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 548 (676)
+.+.|...+......+ ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 5677777776665432 22222 1222333344444234444444443322 23322233333444466777777
Q ss_pred HHHHHhCCCCC-cHHHHH-HHHHHHHHhCCHhHHHHHHHHHHc
Q 005802 549 IEFMKSIPTEE-DAVILG-SFLNVCRLNRNAELAGEAEEKLLR 589 (676)
Q Consensus 549 ~~~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~ 589 (676)
...|+.+...+ +..-|. =+..++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777776322 212221 122345566777777777777764
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.72 E-value=0.014 Score=43.49 Aligned_cols=68 Identities=10% Similarity=-0.033 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 527 PETDHYACMIDLYGRANQ---LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 527 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+++..+..+..++...++ .++|..++++.. .+.++..+..++..+...|++++|+..|+++.+.+|.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 457778888888765444 789999999888 56677788888889999999999999999999998883
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.60 E-value=0.0083 Score=45.97 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP---------TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
+..-+..|...+.+.|++..|..+++.+. ..+...++..+..++.+.|+++.|...++++.+..|+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444556666777777777777766654 123456778888899999999999999999999999987665
Q ss_pred HHH
Q 005802 599 VQL 601 (676)
Q Consensus 599 ~~l 601 (676)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.29 E-value=0.014 Score=47.50 Aligned_cols=90 Identities=17% Similarity=-0.001 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CC-C--cHHHHHHHHHHHHHhCCHhHH
Q 005802 508 SVEMGEKYFNSMTADYKISPETDHYACMIDLYGRAN---QLEKAIEFMKSIP-TE-E--DAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~a 580 (676)
....+.+.|...... + .++..+.-.+..++++.+ +.++++.++++.. .. | ....+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344555555555442 2 356777777788888777 5567887777766 22 3 345666777788999999999
Q ss_pred HHHHHHHHcccCCCCccHH
Q 005802 581 GEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~ 599 (676)
.+.++.+++.+|++.....
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 9999999999998754433
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.25 E-value=0.68 Score=50.73 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHH
Q 005802 298 SGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFD 377 (676)
Q Consensus 298 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 377 (676)
..++..+.+.|..+.|.++.+. . ..-.......|++++|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 4444555555555555543311 0 111233455677777778776664 45678888888888888888888
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005802 378 LLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIF 450 (676)
Q Consensus 378 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (676)
.|.++ .. |..+...+...++.+....+-+.....| -++.-..+|.+.|++++|.+++
T Consensus 703 ~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 703 AFTNA-HD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHH-TC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHc-cC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 88876 22 3344444444555554444443333332 1222333444555555555544
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.23 E-value=0.1 Score=57.31 Aligned_cols=126 Identities=12% Similarity=0.163 Sum_probs=81.0
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHH
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEG 243 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (676)
..++..+.+.|.+++|+++.+.- ..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~---------~~~f~~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A 700 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ---------DQKFELALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLA 700 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH---------HHHHHHHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc---------chheehhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHH
Confidence 56666777778888877766421 112344566788888888877665 557888888888889999999
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 244 LKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 244 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
...|..+.. |..+...+...++.+...++.+.....|. ++.-..+|.+.|++++|.++
T Consensus 701 ~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 701 IEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp HHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHH
Confidence 888887754 23344444446666666555555554442 23334445556666666633
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.77 E-value=2.8 Score=45.36 Aligned_cols=252 Identities=12% Similarity=0.018 Sum_probs=133.2
Q ss_pred HHHHhcCCHHHHHHHHhccCCC----Cch--hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCC---H--hHHHHHHH
Q 005802 333 VGYSLQGNMEEARRHFDSLTEK----NVV--VWTALFSGYVKAQNCEALFDLLSEFVTKEG-VVTD---A--LILVILLG 400 (676)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~---~--~~~~~ll~ 400 (676)
-+....|+.++++.+++..... +.. .=..+.-+....|..+++..++...+.... +.-+ . ..-..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3566778888888888876641 211 223344556667776778887777644322 1111 1 11122222
Q ss_pred HHHhhcC-hhHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CcchH--HHHHHHHHHcCCh
Q 005802 401 ACALQAA-LHPGKEIHAYILRMGVQMDK--KLISTLVDMYSKCGNMTYAEIIFQNFIER-DLVLY--NVMIACYAHHGHE 474 (676)
Q Consensus 401 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~--~~l~~~~~~~~~~ 474 (676)
+....|. -+++...+..+....- +.. ..-.+|.-.+...|+-+....++..+.+. +.... .++.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222332 2344444444443221 111 11123344455667777777777654422 22222 2333344567888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHH---HHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005802 475 EKAILLFEEMLEKGIKPDAVTFV---AILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
+.+..+++.+... ..|. .-|. .+.-+|+..|+......+++.+... ...+......+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888763 1222 2232 3345688889988888888888653 233344444555555567776666677
Q ss_pred HHhCCCCCcHHHHHHHHHHH--HHhCC-HhHHHHHHHHHHc
Q 005802 552 MKSIPTEEDAVILGSFLNVC--RLNRN-AELAGEAEEKLLR 589 (676)
Q Consensus 552 ~~~~~~~~~~~~~~~l~~~~--~~~~~-~~~a~~~~~~~~~ 589 (676)
++.+....++.+......++ ...|+ ..++...++.+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 66554334444444333333 22333 2567777777753
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.64 E-value=0.023 Score=43.43 Aligned_cols=66 Identities=12% Similarity=-0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHccc-------CCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 561 AVILGSFLNVCRLNRNAELAGEAEEKLLRLE-------GNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 561 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
......++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 3445578888999999999999999999873 22356789999999999999999999999986544
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.75 Score=38.39 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=55.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHH
Q 005802 435 DMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEK 514 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 514 (676)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3344566666666665554 3455667777777777777777666665432 2233333444555555554
Q ss_pred HHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 515 YFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 515 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
+-+....+ | -++.-...+.-.|+++++++++.+..
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44433222 1 12333344445666666666665544
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.47 E-value=0.044 Score=43.76 Aligned_cols=52 Identities=8% Similarity=-0.047 Sum_probs=25.6
Q ss_pred CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 575 RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+|.++|.++|+.+++....=+.+|...+.--.++|+.+.|++++.+....++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 4555555555555544222233333444444455555555555555555444
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.046 Score=57.68 Aligned_cols=59 Identities=15% Similarity=0.025 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+..-...|...|+++.|+.+.+++....|.+-.+|..|+.+|...|+|+.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34445567789999999999999999999999999999999999999999999999885
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.22 E-value=0.19 Score=39.18 Aligned_cols=90 Identities=14% Similarity=-0.044 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHH---HHHHHHhCCCC--C--cHHHHHHHHHHHHHhCCHhHH
Q 005802 508 SVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEK---AIEFMKSIPTE--E--DAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a 580 (676)
....+.+.|...... +. |+..+--.+..++.+..+..+ ++.++++.... | ....+-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555544433 32 666666677777777776555 77777776622 2 223445566688899999999
Q ss_pred HHHHHHHHcccCCCCccHH
Q 005802 581 GEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~ 599 (676)
.+.++.+++..|++..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999998765444
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.13 E-value=0.25 Score=38.49 Aligned_cols=141 Identities=9% Similarity=-0.050 Sum_probs=94.6
Q ss_pred HHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 005802 135 CVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKT 214 (676)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 214 (676)
+.-.|.++++.++.....+.. +..-|+=+|.-....-+-+...+.++.+.+-.|. ..+|++......
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHH
Confidence 345677777777777776651 1223555555555555666666666655542222 234555555555
Q ss_pred HhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005802 215 FWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
+-.+. .+....+..+..+...|+-+.-.+++..+.. +.+|+......+..+|.+.|+...+.+++.++.+.|++
T Consensus 84 ~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55544 3455667778888889999888888888644 45678888888889999999999999999999888863
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.13 E-value=0.055 Score=49.21 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=52.2
Q ss_pred HHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHhh-----cCCHHHHHHHHHhCC-CCC--cHHHHHHHHHHHHH-hCC
Q 005802 509 VEMGEKYFNSMTADYKISPE---TDHYACMIDLYGR-----ANQLEKAIEFMKSIP-TEE--DAVILGSFLNVCRL-NRN 576 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~-~~~ 576 (676)
...|...+++.. .+.|+ -..|..|...|.+ -|+.++|.+.|++.. ..| +..+.......++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345555555554 33555 3466677777766 377777777777776 444 25555566666555 477
Q ss_pred HhHHHHHHHHHHcccCC
Q 005802 577 AELAGEAEEKLLRLEGN 593 (676)
Q Consensus 577 ~~~a~~~~~~~~~~~p~ 593 (676)
.+.+.+.+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77888888887777655
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.02 E-value=2.3 Score=35.46 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=51.6
Q ss_pred hcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHH
Q 005802 337 LQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHA 416 (676)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 416 (676)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+. . -+..+.-.|...|+.+....+-+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-~---------D~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ-H---------SFDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-T---------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh-C---------CHHHHHHHHHHhCCHHHHHHHHH
Confidence 445555555665554 24556777777777777777777777654 1 13333334444555554444444
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005802 417 YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNF 453 (676)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 453 (676)
.....| -++.-...+.-.|+++++.++|.+.
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333333 1233334444555565555555443
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.41 E-value=0.29 Score=39.20 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc
Q 005802 542 ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
.++.++|.++|+.+. .+.-...|......-.++|+...|..++.+++.+.|.+..
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 367777777777664 2333666766667777889999999999999988776543
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.19 E-value=5.5 Score=37.23 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCcHhHHHHHHHHHh
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLF----VRMGENGVRWNEHTFASALSACC 270 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 270 (676)
+.++..-|.+.+++++|++++-.- ...+.+.|+...|.++- +.+.+.++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555666677777777665322 23455566665555544 55556788888888777777776
Q ss_pred CCCCh--H---HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 005802 271 GLRNV--K---CAKEIHSWVLKNG--LISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEE 343 (676)
Q Consensus 271 ~~~~~--~---~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 343 (676)
....- + -..+.+.+-.+.| ..-|+.....+...|.+.+++.+|+.-|-....++...+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 55432 1 1222333333444 334777788888888888888888877653333333556555554443332111
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 344 ARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 344 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
+ +... .-.+-.|...++...|..++...
T Consensus 186 ~----------dlfi-aRaVL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 186 A----------PLYC-ARAVLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp H----------HHHH-HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H----------HHHH-HHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 1111 12233355566777776666555
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.27 E-value=0.5 Score=38.71 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=64.5
Q ss_pred CCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 487 KGIKPDA--VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-------TDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 487 ~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
.|+.|.. .++..-+..+...|.++.|.-+.+.+..-.+..|+ ..++..+.+++...|++.+|...|+++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455543 34445566677778888888777765443222333 2355566777777777777777776643
Q ss_pred ----CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 557 ----TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 557 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
..........+ .. ...... -.. .+.+.+.-+.++.+|.+.|++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~-~~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPST-GN---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccc-cc---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 01111110000 00 000000 000 12223466789999999999999999998653
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.76 E-value=10 Score=37.63 Aligned_cols=126 Identities=10% Similarity=0.085 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--------CC--chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHH
Q 005802 331 MIVGYSLQGNMEEARRHFDSLTE--------KN--VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLG 400 (676)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~--------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 400 (676)
.++.|...+++..|..++.++.. |+ ...|...+..+...+++.+|...|.+......+..|...+..++.
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLS 262 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 34444445555555455544321 11 124556666777778888888877776433333333322221111
Q ss_pred ----HHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhhcCCC
Q 005802 401 ----ACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC--GNMTYAEIIFQNFIER 456 (676)
Q Consensus 401 ----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~ 456 (676)
...-.+....-..+.........-++...+..++.+|... .+++...+.|.....+
T Consensus 263 ~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 263 HIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 1111111111122222222222234455666666666543 3466666666655433
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.09 E-value=12 Score=34.74 Aligned_cols=164 Identities=13% Similarity=0.176 Sum_probs=99.0
Q ss_pred HHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCcHhHHHHHHHHHhC
Q 005802 196 NAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKL----FVRMGENGVRWNEHTFASALSACCG 271 (676)
Q Consensus 196 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 271 (676)
.++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+...+.+++++......++..+..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34555566666666666665322 2344556776665554 4555667888888888877777655
Q ss_pred CCC-----hHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhc---CCH
Q 005802 272 LRN-----VKCAKEIHSWVLKNGL--ISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQ---GNM 341 (676)
Q Consensus 272 ~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---~~~ 341 (676)
... ..-..+...+..+.|- .-++.....+...|.+.|++.+|+..|-.....+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 331 1223333444444432 347788999999999999999999877644333566666666655444 443
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 342 EEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
.++--++ .-.+-.|...++...|..+|...
T Consensus 185 ~e~dlf~-----------~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 185 STVAEFF-----------SRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHH-----------HHHHHHHHHTTBHHHHHHHHHHH
T ss_pred chHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH
Confidence 3322211 11233455677888888888776
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.70 E-value=2.8 Score=34.39 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=14.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 533 ACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 533 ~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
-.+..+|.+.|++++|+.+++.++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345566666666666666666665
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.62 E-value=18 Score=34.92 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=11.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 005802 464 MIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444455555555555544443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.33 E-value=1.3 Score=34.74 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhhcCCH---HHHHHHHHhCC-CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 527 PETDHYACMIDLYGRANQL---EKAIEFMKSIP-TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 527 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
|+..+--.+..++.+..+. .+++.++++.. ..| ....+-.+.-++.+.|+++.|.+..+.+++..|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4455555556666655543 34555555544 223 23345555667778888888888888888888876543
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.97 E-value=4.4 Score=32.20 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHhhcCCH---HHHHHHHHhCC-CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 526 SPETDHYACMIDLYGRANQL---EKAIEFMKSIP-TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 526 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.|+..+--.+..++.+..+. .+++.++++.. ..| ....+-.+.-++.+.|++++|.++.+.+++..|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 46666666777777777644 45666766655 223 33455566668999999999999999999999987543
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.76 E-value=4.1 Score=36.47 Aligned_cols=121 Identities=15% Similarity=0.171 Sum_probs=69.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHH----HHHHHHHHHhhc
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETD----HYACMIDLYGRA 542 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 542 (676)
...+.|+.++|++....-++.. +-|...-..|++.+|-.|++++|..-++...+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4456788888888777777653 33555566677888888888888888877753 355532 33333332
Q ss_pred CCHHHHHHHHHhCC----CCCcHHHHHHHHHHH--HHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 543 NQLEKAIEFMKSIP----TEEDAVILGSFLNVC--RLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 543 g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
...-+ ++|.--. ......-...++.+. ...|+.++|..+-.++.+..|..+..
T Consensus 78 E~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 AQARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 11111 1222111 111222333444443 45688888888888888777665543
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.34 E-value=10 Score=43.06 Aligned_cols=165 Identities=8% Similarity=0.001 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcC
Q 005802 328 ISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAA 407 (676)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (676)
...++..+...+..+-+.++...... ++...-.+..++...|++++|...|++. ..|+..+......+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~--------- 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVL--------- 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSH---------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhhh---------
Confidence 34456667777777777776655543 3333345566778888888888888773 33443321110000
Q ss_pred hhHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCc----chHHHHHHHHHHcCChhHH
Q 005802 408 LHPGKEIHAYILRMG--VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI----ERDL----VLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 408 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~A 477 (676)
. . +..+.... ...-..-|..++..+.+.+.++.+.++-.... ..+. ..|..+.+.+...|++++|
T Consensus 883 -~---~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 883 -R---E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp -H---H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred -c---c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0 0 00011100 01112335556666666666666655443221 1111 2577778888888888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHH
Q 005802 478 ILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEM 511 (676)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 511 (676)
...+-.+..... -...+..|+..++..|..+.
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 888877766433 34556666666666555443
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.30 E-value=2.4 Score=31.10 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+.-+..+-++.+....+.|++....+.+++|.+.+++.-|.++++.++.+- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 445666777777778889999999999999999999999999999887653 333556766665
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.79 E-value=1.3 Score=43.19 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.++.++...|+++++...+..+...+|-+...|..|..+|.+.|+..+|++.|+.+.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555667777777777777777777777777777777777777777777666544
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.47 E-value=4.6 Score=42.81 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=36.9
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|...|+++.|+.+-++.. ...|+ ..+|..|+.+|...|+++.|+-.+..++
T Consensus 347 Ll~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 445677777777777765 33566 7777777777777777777777777765
No 255
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.91 E-value=16 Score=31.46 Aligned_cols=49 Identities=16% Similarity=0.013 Sum_probs=20.1
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCC
Q 005802 190 VNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGD 239 (676)
Q Consensus 190 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (676)
++.......+..+.+.|..+..-.+.+.+. .++...-...+.++.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALK-DEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444333333333333 3343333344444444443
No 256
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.84 E-value=21 Score=32.40 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHHHhcCChhHHHHHHhhCCCCC---CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 005802 199 VAACCREGEMEMALKTFWRQPELN---DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWN 258 (676)
Q Consensus 199 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 258 (676)
+...+..|+.+-+..+++..+..+ +....+.+. ..+..|+.....++++.+.+.|..++
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCC
Confidence 444455666666666665433222 222222332 23345555555566666666665554
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.36 E-value=30 Score=39.25 Aligned_cols=148 Identities=8% Similarity=0.040 Sum_probs=89.0
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh--------------------CC--
Q 005802 197 AMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGE--------------------NG-- 254 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------------------~g-- 254 (676)
.++..+.+.|..+.+.++....+. +...--.+..++...|++++|.+.|++.-. ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~--~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS--DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC--CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC--CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 344445555555555555444431 222223334455555666666666544311 00
Q ss_pred CCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCChHHHHHHHHhcCCC--CchhH
Q 005802 255 VRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNP----FVSSGIVDVYCKCENMNYAESMLLLKGVR--NSFSI 328 (676)
Q Consensus 255 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~ 328 (676)
...-..-|.-++..+.+.+.++.+.++-....+.....+. ..|..+...+...|++++|...+..++.+ -....
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cL 974 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCL 974 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHH
Confidence 0112345777888888889999888888877765432222 25788889999999999998888766543 23456
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 005802 329 SSMIVGYSLQGNMEEARR 346 (676)
Q Consensus 329 ~~li~~~~~~~~~~~a~~ 346 (676)
..|+..+|..|..+.-..
T Consensus 975 r~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHhCCChhhhhC
Confidence 777777887777665443
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.32 E-value=42 Score=34.82 Aligned_cols=112 Identities=11% Similarity=-0.033 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHH----HHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 005802 239 DAEEGLKLFVRMGENGVRWNEHTF----ASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAE 314 (676)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 314 (676)
+++.|...+......+. .+.... ..+.......+....+...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 56777777766654321 222211 122222333342334444444433222 22222333333344556666666
Q ss_pred HHHHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 005802 315 SMLLLKGVRN---SFSISSMIVGYSLQGNMEEARRHFDSLTE 353 (676)
Q Consensus 315 ~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (676)
..|..+.... ....--+.+++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6666555421 11112233344555666666666665554
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.10 E-value=30 Score=32.31 Aligned_cols=165 Identities=14% Similarity=0.108 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHH----HHHHHCCCCCCHhHHHHHHHHhh
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLF----EEMLEKGIKPDAVTFVAILSAFR 504 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 504 (676)
++.++..=|.+.+++++|.+++.. -...+.+.|+...|.++. +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344566668888999999887643 233456667766665544 55566788888888777777766
Q ss_pred ccCc--H------HHHHHHHHHchhhcC--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Q 005802 505 HCGS--V------EMGEKYFNSMTADYK--ISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLN 574 (676)
Q Consensus 505 ~~g~--~------~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 574 (676)
.... + .+|+.+-.. +| ..-++.....+...|.+.+++.+|...|-- ...+.+..+..++.-+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~----~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKK----FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHH----HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHh
Confidence 5442 1 222222222 13 223477788899999999999999988832 2233445666666555444
Q ss_pred CCHhHHHHHHHHHHcccCCCCccHHH-HHHHHHhcCChhHHHHHHHHHHhC
Q 005802 575 RNAELAGEAEEKLLRLEGNNKARYVQ-LANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+. |.....|.. .+--|...|+...|..+++...+.
T Consensus 181 ~~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 181 DE---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp SC---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33 222233322 234477789999999988777653
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.57 E-value=7.4 Score=37.79 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchh----hcCCCCCHHHHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTA----DYKISPETDHYA 533 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 533 (676)
...++..+...|++.+|+..+..+.... +.+...+..++.++...|+..+|++.|+.+.. +.|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445667778888999888888887642 44677888899999999999999888887643 458888866543
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.31 E-value=12 Score=27.59 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005802 239 DAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVD 302 (676)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (676)
+.-+..+-++.+....+.|+.....+.+++|.+.+++..|.++++-+....- +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 4445666777777778889999999999999999999999999988766532 22445665553
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.78 E-value=5.1 Score=31.23 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+.-+..+-++.+....+.|++......+.+|.+.+|+..|.++|+.++.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34455666777777888999999999999999999999999999998764 3444666776665
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.82 E-value=15 Score=26.78 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=38.8
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHh
Q 005802 63 ISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQS 116 (676)
Q Consensus 63 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 116 (676)
+..+..+|++++|..+.+.+.-||...|-+|-.. +.|-.. .+..-+.++..
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s-~le~rL~~la~ 96 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGA-ALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHH-HHHHHHHHHHT
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHH-HHHHHHHHHHh
Confidence 4467889999999999999999999999887654 555555 66666656654
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.77 E-value=2.6 Score=37.78 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=42.3
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 537 DLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
..+.+.|++++|++.+.... .+.|......++..++..|++++|..-++...+++|.-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34567788888887776655 34466666777778888888888888888888887763
No 265
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=79.66 E-value=49 Score=32.45 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=21.3
Q ss_pred HHHHhhhccchHHHHHhhhhcCCC--CchhhHHHHHHHHHhcCChhHHHHHHhh
Q 005802 166 LIDMYSKCRCYEEACRVFEGCTEE--VNLISKNAMVAACCREGEMEMALKTFWR 217 (676)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 217 (676)
.+...++.|+.+-+..+++.-... .+.. ..+.+...+..|+.+-+..+++.
T Consensus 116 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 116 PLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcCCCCC-CCCHHHHHHHcCCHHHHHHHHhC
Confidence 334444555555555555432210 0111 11223344455665555555443
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.73 E-value=17 Score=26.59 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005802 408 LHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEK 487 (676)
Q Consensus 408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 487 (676)
.++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|-.+.+...+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555555442 22222222345667888888888888888888888876643 4667777777777777766
Q ss_pred CCCCCHhHH
Q 005802 488 GIKPDAVTF 496 (676)
Q Consensus 488 g~~p~~~~~ 496 (676)
| .|....|
T Consensus 98 g-~p~~q~F 105 (115)
T 2uwj_G 98 S-DPALADF 105 (115)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 5 4444444
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.87 E-value=18 Score=26.48 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005802 408 LHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEK 487 (676)
Q Consensus 408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 487 (676)
.++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|.. .+.|-.+.+...+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555555442 22222222345567788888888888888888888876654 3567777777777677665
Q ss_pred CCCCCHhHH
Q 005802 488 GIKPDAVTF 496 (676)
Q Consensus 488 g~~p~~~~~ 496 (676)
| .|....|
T Consensus 99 g-~p~~q~F 106 (116)
T 2p58_C 99 Q-DPRIQTF 106 (116)
T ss_dssp C-CHHHHHH
T ss_pred C-CHHHHHH
Confidence 5 3433333
No 268
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=77.59 E-value=72 Score=33.25 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=39.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK- 439 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 439 (676)
.....+.-.|+++.|++.+... ...+.+.+.+.+..+ |-+.....++..- .+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~~---gLL~~~~~lls~~--~~-~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF-----SEMDAVHLAIGLASL---KLFKIDSSTRLTK--KP-KR-DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc-----CchhHHHHHHHHHHc---CCccCCCcccccC--CC-cc-cccHHHHHHHHHHH
Confidence 4566677788999998887642 244444444444433 2222111111100 00 11 2225566766655
Q ss_pred --cCCHHHHHHHHhhcC
Q 005802 440 --CGNMTYAEIIFQNFI 454 (676)
Q Consensus 440 --~g~~~~A~~~~~~~~ 454 (676)
..+...|.+.|--+.
T Consensus 367 F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTTCHHHHHHHHHGGG
T ss_pred hhcCCHHHHHHHHHHHh
Confidence 466777777665553
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.50 E-value=15 Score=31.22 Aligned_cols=46 Identities=9% Similarity=-0.114 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCC----CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 545 LEKAIEFMKSIP----TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 545 ~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
..++.++|.-|. ...-...|......+-..|++.+|..+|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344444444333 2334444555555555555555555555555544
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=75.68 E-value=36 Score=28.85 Aligned_cols=49 Identities=16% Similarity=0.013 Sum_probs=21.0
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCC
Q 005802 190 VNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGD 239 (676)
Q Consensus 190 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (676)
++.......+..+.+.|..+....+.+.+. .++...-...+.++...|.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALK-DEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC
Confidence 344444444455555544333333333333 3444433444444444443
No 271
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.58 E-value=66 Score=31.77 Aligned_cols=96 Identities=7% Similarity=0.044 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCC---HhHHHHHHHHhhccCcHHHHHHHHHHchhhc---CCCCC--HH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLE--KGIKPD---AVTFVAILSAFRHCGSVEMGEKYFNSMTADY---KISPE--TD 530 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~--~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~ 530 (676)
...|...+...|++.+|..++..+.. .|.-+. ...+...++.|...+++.+|..+++++.... ...|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 34577888889999999999988764 222211 2345566778888999999999988864211 22233 35
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
.+...+..+...+++.+|-+.|.++-
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66778888888999999888876654
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.68 E-value=15 Score=28.69 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=45.1
Q ss_pred HHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 005802 106 DALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLID 168 (676)
Q Consensus 106 ~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (676)
+..+-++.+.. ...-|++......+++|.+.+|+..|.++++-++... .+...+|..+++
T Consensus 71 ElrrglN~l~~--~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 55666667766 7788999999999999999999999999999887763 222444555543
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.99 E-value=56 Score=30.24 Aligned_cols=168 Identities=8% Similarity=-0.018 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHH----HHHHHHCCCCCCHhHHHHHHHHhh
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILL----FEEMLEKGIKPDAVTFVAILSAFR 504 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 504 (676)
++.++..=|.+.+++++|.+++.. -...+.++|+...|.++ ++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344566667788888888887643 23345667876666554 555556788888888877777665
Q ss_pred ccC--c------HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHh--
Q 005802 505 HCG--S------VEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLN-- 574 (676)
Q Consensus 505 ~~g--~------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-- 574 (676)
... . ..+|..+-...-. ...-++.....+...|.+.|++.+|...|--.. ..++..+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcC
Confidence 422 1 2223332222210 012357888889999999999999998775321 22455666665555444
Q ss_pred -CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 575 -RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 575 -~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
|...++--..- ..+--|...|+...|..+++...+.
T Consensus 181 ~~~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 181 DIEDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCCHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33222222211 1223466789999999998877643
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=73.80 E-value=20 Score=32.80 Aligned_cols=51 Identities=6% Similarity=0.011 Sum_probs=22.7
Q ss_pred HHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHH
Q 005802 165 SLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTF 215 (676)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 215 (676)
+.+...+..|+.+-+.-+++.-....+.....+-+...+..|+.+-+.-++
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 444444555555555544444322222212233344445555555554444
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.03 E-value=53 Score=29.51 Aligned_cols=22 Identities=0% Similarity=0.137 Sum_probs=13.9
Q ss_pred HHHHHHHhcCChhHHHHHHhhC
Q 005802 197 AMVAACCREGEMEMALKTFWRQ 218 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~ 218 (676)
+.+...++.|+++....+++.-
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHHHHHcC
Confidence 4455566677777666666553
No 276
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.48 E-value=1.2e+02 Score=33.22 Aligned_cols=394 Identities=10% Similarity=0.039 Sum_probs=186.5
Q ss_pred hhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHH-------------hhCCCCCCeeeHH
Q 005802 162 AVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTF-------------WRQPELNDAVSWN 228 (676)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~ 228 (676)
-|..++.++.+.++.+.+.++|+++....+....-.+.-.+.+.+...--.++. +-+........|.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~ILsg~~~~~Lyl 311 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNILSGLPTCDYYN 311 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHHTTSHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHHhCCCChHHHHH
Confidence 477888888899999999999988654333333333333344433211111111 1111011122233
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC---cHhHHHHHHHHHhCCCChHHH-HHH-HHHHHHhCCCCchhHHHHHHHH
Q 005802 229 TLISGYVQNGDAEEGLKLFVRMGENGVRW---NEHTFASALSACCGLRNVKCA-KEI-HSWVLKNGLISNPFVSSGIVDV 303 (676)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a-~~~-~~~~~~~~~~~~~~~~~~l~~~ 303 (676)
.++. +.+..+ ..+++.++. .+.+ -..+-.++.+++...|-.... ... ..++-+. .+-...-...--+
T Consensus 312 ~FL~---~~n~~d--~~~l~~~K~-~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLG 383 (963)
T 4ady_A 312 TFLL---NNKNID--IGLLNKSKS-SLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLG 383 (963)
T ss_dssp HHHH---HHCCCC--HHHHHHHHH-HSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHH
T ss_pred HHHH---hccccc--hhhHHHHHh-hhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhh
Confidence 3322 222221 122222222 1211 122334555666666643221 111 1122221 1111122222334
Q ss_pred HHhcCChHHHHHHHHhcCCC----Cch--hHHHHHHHHHhcCCHHHHHHHHhccCC-CC--------c--hhHHHHHHHH
Q 005802 304 YCKCENMNYAESMLLLKGVR----NSF--SISSMIVGYSLQGNMEEARRHFDSLTE-KN--------V--VVWTALFSGY 366 (676)
Q Consensus 304 ~~~~g~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~-~~--------~--~~~~~li~~~ 366 (676)
....|+.+.+...+...... +.. .-..+.-++...|..+++..++..... ++ . ..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 56678888888887766541 111 222334455566665666666555332 22 1 1122333333
Q ss_pred HHcCC-hHHHHHHHHHHHHcCCCCCCHhHHHHHH--HHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHH--HHhcC
Q 005802 367 VKAQN-CEALFDLLSEFVTKEGVVTDALILVILL--GACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDM--YSKCG 441 (676)
Q Consensus 367 ~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g 441 (676)
+-.|. -+++...+..++.... +.......+. ..+.-.|+.+....++..+.+.. +..+...+.-+ +...|
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 33332 2456666666534321 1111122222 22334566666677777666532 22333333333 33567
Q ss_pred CHHHHHHHHhhcCC-CCcc-hHH---HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 005802 442 NMTYAEIIFQNFIE-RDLV-LYN---VMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 442 ~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
+.+.+..+++.+.. .+.. -|. ++.-+|+..|+.....++++.+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77766666665542 2322 222 23445667788777667888887641 222222222223444456666677777
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCcHHHHHHHHHHH
Q 005802 517 NSMTADYKISPETDHYACMIDLYGRANQL-EKAIEFMKSIPTEEDAVILGSFLNVC 571 (676)
Q Consensus 517 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~ 571 (676)
+.+... ..|....-..+.-+....|.. .+|++.+..+...++..+-...+.++
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 766442 345555555555555556554 67888888887666666554444433
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.37 E-value=11 Score=37.10 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=55.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCcHHHHHHH-
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP----TEEDAVILGSF- 567 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l- 567 (676)
+...+...|.+.|+++.|.+.+.++... -..+. ...+-.++..+...+++..+...+.++. ..+++...+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 5566677777777777777777777554 22222 5566667777777777777777766654 22232222111
Q ss_pred ---HHHHHHhCCHhHHHHHHHHHHcc
Q 005802 568 ---LNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 568 ---~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
+..+...+++..|-..|-.+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11234556677766666665543
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=71.71 E-value=53 Score=29.89 Aligned_cols=113 Identities=10% Similarity=-0.004 Sum_probs=49.5
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhcCCCCCc--hhhHHHHHhhhccchHHHHHhhhhcCC--CCchhhHHHHHHHHHhcCC
Q 005802 132 LNLCVKLLNVGFGRQLHAFMVKTSNDASGF--AVSSLIDMYSKCRCYEEACRVFEGCTE--EVNLISKNAMVAACCREGE 207 (676)
Q Consensus 132 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 207 (676)
+...+..|+.+-+ +.+.+.|..++.. .-.+.+...+..|+.+-+.-+++.-.. ..+..-+.+.+...+..|+
T Consensus 66 L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~ 141 (285)
T 3kea_A 66 LHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141 (285)
T ss_dssp HHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred HHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Confidence 3344445554433 3333444444332 112333444455555555555443111 1122222344455556677
Q ss_pred hhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 005802 208 MEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFV 248 (676)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 248 (676)
.+-+.-+++.-....+...-.+.+...+..|+.+-+.-+++
T Consensus 142 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 142 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 66666666554422222123344444456666554444443
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.15 E-value=32 Score=27.77 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=27.2
Q ss_pred HHHHHHHHHcc--cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 580 AGEAEEKLLRL--EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 580 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
...+|..+... ....+..|...+..+...|++++|.++++.-.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 55555555544 33445556666666666666666666666655543
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=67.96 E-value=60 Score=28.13 Aligned_cols=47 Identities=6% Similarity=0.118 Sum_probs=25.4
Q ss_pred HhCCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhccCC
Q 005802 36 SKHNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDSSP 83 (676)
Q Consensus 36 ~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 83 (676)
++.|+++-+..+++.-.. ++.... +.+...++.|+.+-+.-+++...
T Consensus 17 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 17 TQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHHHcCC
Confidence 466777666666654332 222222 23445556677766666666544
No 281
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=67.35 E-value=51 Score=30.45 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCChhHHHHHHhhCCCCCC---eeeHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCcHhH
Q 005802 196 NAMVAACCREGEMEMALKTFWRQPELND---AVSWNTLISGYVQNGD--AEEGLKLFVRMGENGVRWNEHT 261 (676)
Q Consensus 196 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 261 (676)
..++.-|...|+.++|.+.++++. .|. ...+..+..++-+.++ .+....++..+...|+-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~-~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC-CGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-CCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 457777777888888888888887 441 1122333333333322 3456677777776666544433
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.43 E-value=58 Score=28.38 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=7.7
Q ss_pred HHhcCChhHHHHHHhh
Q 005802 202 CCREGEMEMALKTFWR 217 (676)
Q Consensus 202 ~~~~g~~~~A~~~~~~ 217 (676)
.+..|+.+-...+++.
T Consensus 86 A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555555444444
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.38 E-value=28 Score=34.25 Aligned_cols=96 Identities=10% Similarity=-0.004 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC------CCcchHHHHHHHHHHcCChhHHHHHHHHHHH---CCCCCCHhHH--
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIE------RDLVLYNVMIACYAHHGHEEKAILLFEEMLE---KGIKPDAVTF-- 496 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~~-- 496 (676)
.+...+...|.+.|+++.|.+.|.++.. .-...+-.+++.+...+++..+...+.+... .+-.|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566788888889999888888887752 1234666777888888888888888887654 3322322211
Q ss_pred HHHHHHhhccCcHHHHHHHHHHchhhc
Q 005802 497 VAILSAFRHCGSVEMGEKYFNSMTADY 523 (676)
Q Consensus 497 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 523 (676)
..-...+...+++..|-..|-.....+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 112223456788888888777765553
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.70 E-value=41 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=15.3
Q ss_pred CCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 594 NKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.+..|...+..+...|++.+|.++++.-.+.
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444455555555555555555555544443
No 285
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.05 E-value=46 Score=24.41 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=23.7
Q ss_pred HHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 335 YSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
+...|++++|..+.+.+.-||...|-+|.. .+.|-.+++...+..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 334444444446666555555555554443 2445555555555454
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.85 E-value=57 Score=27.72 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHHh
Q 005802 275 VKCAKEIHSWVLKNGLIS-NPFVSSGIVDVYCKCENMNYAESMLLL 319 (676)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 319 (676)
......+|..|...|+-. -...|-.....+-..|++.+|.+++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444422 222334444444444444444443333
No 287
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=60.51 E-value=1.1e+02 Score=28.69 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCC
Q 005802 60 NTIISACIKSHDLKQARSLFDSSPHK 85 (676)
Q Consensus 60 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 85 (676)
+.++.-|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34555555666666666666666544
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=60.35 E-value=84 Score=27.15 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=13.2
Q ss_pred HHHhcCChHHHHHHhccCC
Q 005802 65 ACIKSHDLKQARSLFDSSP 83 (676)
Q Consensus 65 ~~~~~g~~~~A~~~~~~~~ 83 (676)
..++.|+++....+++.-.
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~ 33 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGY 33 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHcCC
Confidence 3566788888877777644
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.21 E-value=1.3e+02 Score=28.97 Aligned_cols=124 Identities=12% Similarity=0.061 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhccCCC--------CchhHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCHhHH-
Q 005802 326 FSISSMIVGYSLQGNMEEARRHFDSLTEK--------NVVVWTALFSGYVKA-QNCEALFDLLSEFVTKEGVVTDALIL- 395 (676)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~p~~~~~- 395 (676)
.+...|...|.+.|+.++..+++.....- ....-..++..+... +..+.-+++..+.++-.. -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 35666778888899998888888877641 122334455555443 223333333333311110 011112
Q ss_pred -----HHHHHHHHhhcChhHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHh
Q 005802 396 -----VILLGACALQAALHPGKEIHAYILRMGVQMD-----KKLISTLVDMYSKCGNMTYAEIIFQ 451 (676)
Q Consensus 396 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (676)
..+...+...|++.+|..++..+.+.--..| ..++..-+.+|...+++.++...+.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1344555556666666555555544211111 1122333445555555555555444
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.06 E-value=84 Score=26.73 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=7.1
Q ss_pred CHhHHHHHHHHhhccCc
Q 005802 492 DAVTFVAILSAFRHCGS 508 (676)
Q Consensus 492 ~~~~~~~ll~~~~~~g~ 508 (676)
+...-...+.++...+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333444444444443
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=58.45 E-value=61 Score=27.20 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=9.2
Q ss_pred HHhcCChHHHHHHhccC
Q 005802 66 CIKSHDLKQARSLFDSS 82 (676)
Q Consensus 66 ~~~~g~~~~A~~~~~~~ 82 (676)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34455666666555543
No 292
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=57.85 E-value=85 Score=26.42 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=25.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
+..+-...+.++.+.+..+....+..-+..++...-...+.++.+.|. .++...+..+..
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 333334444444444443322223333333444444444455555544 334444444443
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=56.60 E-value=43 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=22.1
Q ss_pred HHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 568 LNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 568 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
+..|.+.|.+++|.+++++.....+.+...-..|..+-.+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3467777777777777777776666555555555444333
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.47 E-value=53 Score=32.84 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=13.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
.++.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444555555555555555555544
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.55 E-value=89 Score=25.17 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCCc-HhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005802 242 EGLKLFVRMGENGVRWN-EHTFASALSACCGLRNVKCAKEIHSWVLKNGLIS 292 (676)
Q Consensus 242 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 292 (676)
++.++|..|..+||--. +..|......+...|++.+|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35556666655554332 2334444444555555666655555555554444
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.94 E-value=53 Score=25.62 Aligned_cols=64 Identities=14% Similarity=0.263 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCH
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIERDL---VLYNVMIACYAHHGH--EEKAILLFEEMLEKGIKPDA 493 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~ 493 (676)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45677788888888888888888875522 233334444444332 35566777777766654433
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=47.67 E-value=2e+02 Score=27.81 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=24.6
Q ss_pred HHHhCCCchHHHHHhccCCCCCcc--hHHHHHHHHHhcCChHHHHHHhccCC
Q 005802 34 IYSKHNLLRESRKLFDEMPERNVF--SWNTIISACIKSHDLKQARSLFDSSP 83 (676)
Q Consensus 34 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~ 83 (676)
.-+..|+.+-+..+++.-..++.. ...+.+...++.|+.+-+.-+++.-.
T Consensus 20 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~ 71 (437)
T 1n11_A 20 VASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71 (437)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 334566666666666543322211 11223444455666666666665433
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.65 E-value=76 Score=30.02 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 005802 58 SWNTIISACIKSHDLKQARSLFDSSPHKD 86 (676)
Q Consensus 58 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 86 (676)
....+|.-|...|+.++|...++++..|.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 45667777888889999999888887655
No 299
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=44.70 E-value=1.5e+02 Score=25.39 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=6.6
Q ss_pred HHhcCChHHHHHHhc
Q 005802 66 CIKSHDLKQARSLFD 80 (676)
Q Consensus 66 ~~~~g~~~~A~~~~~ 80 (676)
.++.|+++....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334444444444443
No 300
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=44.19 E-value=1.2e+02 Score=28.63 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=11.5
Q ss_pred HHHHHhcCChHHHHHHhccCC
Q 005802 63 ISACIKSHDLKQARSLFDSSP 83 (676)
Q Consensus 63 l~~~~~~g~~~~A~~~~~~~~ 83 (676)
+...+..|+.+-+..+++.-.
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~ 44 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGV 44 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCC
Confidence 334445566666666665533
No 301
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=43.07 E-value=2.2e+02 Score=26.96 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCC
Q 005802 60 NTIISACIKSHDLKQARSLFDSSPHK 85 (676)
Q Consensus 60 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 85 (676)
..+|.-|...|++++|...++++..|
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 34455555555555555555555444
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.41 E-value=61 Score=28.52 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=43.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHH--CCCCC----CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLE--KGIKP----DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~--~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 538 (676)
++.+....++++|.+++++..+ .+.++ +.......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHHH
Confidence 4556666777777777665543 12221 1111122222222222223333444444 21 3455556666777
Q ss_pred HhhcCCHHHHHHHHHh
Q 005802 539 YGRANQLEKAIEFMKS 554 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~ 554 (676)
+.+.|+.++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888888888877654
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.06 E-value=46 Score=26.88 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCC
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGH--EEKAILLFEEMLEKGIKPD 492 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 492 (676)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567788888888888888888887552 2233334444444322 3456677777776665443
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.51 E-value=1.1e+02 Score=26.86 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=13.9
Q ss_pred HHHHHHccCCcHHHHHHHHHHHH
Q 005802 131 TLNLCVKLLNVGFGRQLHAFMVK 153 (676)
Q Consensus 131 ll~~~~~~~~~~~a~~~~~~~~~ 153 (676)
-+..+...+++++|..+++...+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 34556666666666666665544
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.13 E-value=61 Score=28.08 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 543 NQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 543 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
.+..+...++..-. ...-...|......+-..|++.+|..+|+..++.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34444444433333 3445556666666677777777777777777765
No 306
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.54 E-value=3.6e+02 Score=28.07 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=36.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHH---cCChHHH
Q 005802 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVK---AQNCEAL 375 (676)
Q Consensus 299 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a 375 (676)
.....+.-+|.++.|.+.+-.....+.+.+. -++...|-+.....++..-.......+..||..|.+ ..+...|
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~~~vdAVH~A---IaL~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~A 375 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTFSEMDAVHLA---IGLASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVA 375 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCHHHHHHHH---HHHHHTTC-----------------CHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCchhHHHHH---HHHHHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHH
Confidence 3455566678888888777655212222222 222223332221111111001112235667776665 4677788
Q ss_pred HHHHHHH
Q 005802 376 FDLLSEF 382 (676)
Q Consensus 376 ~~~~~~m 382 (676)
+++|--+
T Consensus 376 l~Y~~li 382 (661)
T 2qx5_A 376 VEYLVLI 382 (661)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 8777665
No 307
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=38.21 E-value=65 Score=32.27 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=19.9
Q ss_pred CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHH
Q 005802 575 RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMG 615 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 615 (676)
..++.|...|.++..+.|.+...|+.|+.+....|+.-+|.
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 34445555555555555555555555555444444444433
No 308
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.36 E-value=61 Score=32.42 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCc----H--HHHH-HHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIPTEED----A--VILG-SFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
...++.+++.|...+.++.|.+++.+...+.. . ..|. .++..+...++|.+|.+.+..+....|.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 67788899999999999999999998873322 1 1222 33456778889999999999999888887644
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.57 E-value=91 Score=27.55 Aligned_cols=55 Identities=9% Similarity=-0.024 Sum_probs=31.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHhH-------HHHHHHHHh--CCCChHHHHHHHHHH
Q 005802 231 ISGYVQNGDAEEGLKLFVRMGENGVRWNEHT-------FASALSACC--GLRNVKCAKEIHSWV 285 (676)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 285 (676)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3344566777777777776666665554332 233443332 556766666665543
No 310
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=35.28 E-value=2.5e+02 Score=25.21 Aligned_cols=58 Identities=12% Similarity=-0.007 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHhccCC--------------CCCcchHHHHHHHHHhcCChHHHHHHhccCCC
Q 005802 26 ITTNQLIHIYSKHNLLRESRKLFDEMP--------------ERNVFSWNTIISACIKSHDLKQARSLFDSSPH 84 (676)
Q Consensus 26 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 84 (676)
......+...+..|+.+++.+.....+ ..|..-++ .+...+..|+.+-+..+++.-..
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~~ 84 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS-PMHEAAIHGHQLSLRNLISQGWA 84 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCC-HHHHHHHcCCHHHHHHHHHCCCC
Confidence 334455566667777776666433211 12333333 34445667777777777765443
No 311
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.06 E-value=2.3e+02 Score=31.26 Aligned_cols=86 Identities=7% Similarity=-0.113 Sum_probs=44.1
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--C-CC----------------
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--T-EE---------------- 559 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~---------------- 559 (676)
++..|...|.++-|.++..-+ +-++..--.+..+|...|++++|.+.|+++. . .+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 445555566666554433322 1122222245566666777777777776654 1 11
Q ss_pred ------cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 560 ------DAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 560 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
....|..++..+.+.+-++-+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1113444555555666666666666666654
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.97 E-value=3.7e+02 Score=29.59 Aligned_cols=57 Identities=7% Similarity=-0.021 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005802 330 SMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVV 389 (676)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 389 (676)
.++..+...|..+-+.++...+.. ++..--.+..+|...|++++|...|++. ..|+.
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA--A~gl~ 871 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLY 871 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCTTC
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH--hhhcc
Confidence 366677778888888877766665 4333335667888899999999999874 44553
No 313
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.17 E-value=1.2e+02 Score=20.95 Aligned_cols=62 Identities=6% Similarity=0.050 Sum_probs=39.7
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005802 248 VRMGENGVRWNEHTFASALSACCGLR-NVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENM 310 (676)
Q Consensus 248 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 310 (676)
+.|.+.|+.++..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 345667777766553 4555555554 5566778888887776666666666666666666543
No 314
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.94 E-value=1.9e+02 Score=24.78 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=10.3
Q ss_pred HHHHHhcCChhHHHHHHhh
Q 005802 199 VAACCREGEMEMALKTFWR 217 (676)
Q Consensus 199 ~~~~~~~g~~~~A~~~~~~ 217 (676)
+...++.|+.+-+.-+++.
T Consensus 201 l~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 201 FKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 4444556666655555543
No 315
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=32.48 E-value=3e+02 Score=25.30 Aligned_cols=255 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhccCCCCCcccHH--HHHHHHHhcCCC
Q 005802 29 NQLIHIYSKHNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYN--SMLCGYINAEGY 103 (676)
Q Consensus 29 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ll~~~~~~~~~ 103 (676)
...+...++.|+.+.+..++..... .....-.+.+...+..|+.+-+..+++.-..++..... +.+...+..|+.
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 104 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHY 104 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCH
Q ss_pred hhHHHHHHHHhHhccCCCCCChhhHH--HHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHH
Q 005802 104 EADALKLFIEMQSADEHIRMDEFTVT--STLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACR 181 (676)
Q Consensus 104 ~~~a~~~~~~m~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 181 (676)
+ +++.+.+ .|..++..... +.+...+..|+ .++.+.+.+.|..|+..
T Consensus 105 ~-----iv~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~-------------------- 153 (351)
T 3utm_A 105 E-----VTELLLK--HGACVNAMDLWQFTPLHEAASKNR----VEVCSLLLSHGADPTLV-------------------- 153 (351)
T ss_dssp H-----HHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCC--------------------
T ss_pred H-----HHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCccc--------------------
Q ss_pred hhhhcCCCCchhhHHHH------------------HHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHH
Q 005802 182 VFEGCTEEVNLISKNAM------------------VAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEG 243 (676)
Q Consensus 182 ~~~~~~~~~~~~~~~~l------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (676)
.....+...+ +...+..++.+....++..-...........-.-.++-......-
T Consensus 154 -------~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~ 226 (351)
T 3utm_A 154 -------NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR 226 (351)
T ss_dssp -------CTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTH
T ss_pred -------cCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccH
Q ss_pred HHHHHHHHhCCCCCcHhHH--HHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCChHHHHHHHHh
Q 005802 244 LKLFVRMGENGVRWNEHTF--ASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVS--SGIVDVYCKCENMNYAESMLLL 319 (676)
Q Consensus 244 ~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~ 319 (676)
.++.+.+.+.|..++.... .+.+...+..|+. ++.+.+.+.|..++.... ..-+...+..|+.+.+.-+++.
T Consensus 227 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 302 (351)
T 3utm_A 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302 (351)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Q ss_pred cCCCCc
Q 005802 320 KGVRNS 325 (676)
Q Consensus 320 ~~~~~~ 325 (676)
...++.
T Consensus 303 gad~~~ 308 (351)
T 3utm_A 303 GSDPSI 308 (351)
T ss_dssp TCCTTC
T ss_pred CCCCCC
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.92 E-value=2.7e+02 Score=25.64 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCch--hHHHHHHHHHHcCC--hHHHHHHHHHH
Q 005802 328 ISSMIVGYSLQGNMEEARRHFDSLTEKNVV--VWTALFSGYVKAQN--CEALFDLLSEF 382 (676)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~m 382 (676)
...++.-|...|+.++|...++++..|... ....++......++ -+.+-.++..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L 64 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDL 64 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 467888899999999999999999876522 22333443333332 23455566666
No 317
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.69 E-value=1.9e+02 Score=24.76 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=27.0
Q ss_pred HHHHHHHHHHchhhcCCCCC-HHHHH-----HHHHHHhhcCCHHHHHHHHHhCC
Q 005802 509 VEMGEKYFNSMTADYKISPE-TDHYA-----CMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
.+.|+.+|+.+.....+... ...-. ..+-.|.+.|.+++|.+++++.-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 45666777766554222112 11111 23445677788888888877766
No 318
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=31.69 E-value=2.8e+02 Score=24.69 Aligned_cols=19 Identities=5% Similarity=-0.087 Sum_probs=8.4
Q ss_pred CchhHHHHHHHHHHhcCCh
Q 005802 292 SNPFVSSGIVDVYCKCENM 310 (676)
Q Consensus 292 ~~~~~~~~l~~~~~~~g~~ 310 (676)
++..+-...+.++.+.|+.
T Consensus 140 ~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDK 158 (280)
T ss_dssp SCHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHhcCCH
Confidence 4555555555555555543
No 319
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.68 E-value=1.8e+02 Score=22.58 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCc---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCC
Q 005802 329 SSMIVGYSLQGNMEEARRHFDSLTEKNV---VVWTALFSGYVKAQN--CEALFDLLSEFVTKEGVVTD 391 (676)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~p~ 391 (676)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+ ...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L-~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL-WKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH-HHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHCCCcCH
Confidence 4455555666666666677777665422 123333334443322 34566666666 44444333
No 320
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.26 E-value=2.5e+02 Score=24.02 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=13.6
Q ss_pred HHHHHhCCCChHHHHHHHHHHHH
Q 005802 265 ALSACCGLRNVKCAKEIHSWVLK 287 (676)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~ 287 (676)
.+......++...+.++.+.+.+
T Consensus 213 ~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 213 PLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445566666666666666554
No 321
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=31.21 E-value=2.8e+02 Score=24.64 Aligned_cols=60 Identities=3% Similarity=-0.063 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 527 PETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 527 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
++..+-...+.++.+.|+..-.-.+.+.+. .++ .....+.++...|+ ..+...+.++.+.
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc
Confidence 344444445555555554322222222222 222 22233444444444 3444555555443
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.98 E-value=1.9e+02 Score=25.31 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=9.6
Q ss_pred HhcCCChhHHHHHHHHhHh
Q 005802 98 INAEGYEADALKLFIEMQS 116 (676)
Q Consensus 98 ~~~~~~~~~a~~~~~~m~~ 116 (676)
++.|+.+ ....+++.+.+
T Consensus 13 ~~~g~~~-~v~~ll~~l~~ 30 (260)
T 3jxi_A 13 VSRGSPD-GLEGLLSFLLT 30 (260)
T ss_dssp HHHTCGG-GGTTHHHHHHH
T ss_pred HHhCCHH-HHHHHHHHHHh
Confidence 3455555 55555554444
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.48 E-value=1.2e+02 Score=24.05 Aligned_cols=61 Identities=15% Similarity=0.024 Sum_probs=30.9
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005802 249 RMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENM 310 (676)
Q Consensus 249 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 310 (676)
.+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 344556555544322 2333333344455666666665555545555555555555555544
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.96 E-value=65 Score=23.53 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=23.8
Q ss_pred CHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHH
Q 005802 340 NMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEAL 375 (676)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 375 (676)
+.+.|.++++.++.+++.+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 455566777777777777777777777665654443
No 325
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.22 E-value=2.4e+02 Score=22.97 Aligned_cols=53 Identities=11% Similarity=0.247 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC
Q 005802 475 EKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE 528 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 528 (676)
+.+.++|..|..+|+-.. ...|......+...|++.+|.++|+.-++. +-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 346667777877776655 344555566667778888888888777665 55664
No 326
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.14 E-value=2.8e+02 Score=23.65 Aligned_cols=14 Identities=14% Similarity=-0.161 Sum_probs=6.2
Q ss_pred HhcCChHHHHHHHH
Q 005802 305 CKCENMNYAESMLL 318 (676)
Q Consensus 305 ~~~g~~~~a~~~~~ 318 (676)
...|+...+.++.+
T Consensus 218 ~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 218 SLNSQVWSALQMSK 231 (237)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.11 E-value=1.9e+02 Score=23.07 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=42.0
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 005802 248 VRMGENGVRWNEHTFASALSACCGLR-NVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMN 311 (676)
Q Consensus 248 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 311 (676)
+.|.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4466778877765543 444555555 66778889888888876667766666666776666543
No 328
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=28.05 E-value=3.3e+02 Score=24.36 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC
Q 005802 59 WNTIISACIKSHDLKQARSLFDSSPH 84 (676)
Q Consensus 59 ~~~ll~~~~~~g~~~~A~~~~~~~~~ 84 (676)
-.+.+...+..|+++.+..+++.-..
T Consensus 40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~ 65 (299)
T 1s70_B 40 DGAVFLAACSSGDTEEVLRLLERGAD 65 (299)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred CccHHHHHHHcCCHHHHHHHHHcCCC
Confidence 34556666677888888877776543
No 329
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=28.00 E-value=2e+02 Score=22.77 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=6.9
Q ss_pred HHhcCChhHHHHHHh
Q 005802 202 CCREGEMEMALKTFW 216 (676)
Q Consensus 202 ~~~~g~~~~A~~~~~ 216 (676)
.++.|+.+....+++
T Consensus 15 A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 15 AAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHTCHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHH
Confidence 334455544444443
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.00 E-value=1.5e+02 Score=24.05 Aligned_cols=70 Identities=7% Similarity=0.102 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCC
Q 005802 372 CEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRM--GVQMDKKLISTLVDMYSKCGN 442 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 442 (676)
.+.+++-+.+.+...|.+++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34556666666577788776543 34455566666777788888888877 656666665555666666553
No 331
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=26.66 E-value=13 Score=28.40 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=37.2
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHH
Q 005802 226 SWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEI 281 (676)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (676)
.|.-.|...+.+++.+-|.++++-+.+.| +...|.+.|-.|...=+++.+.++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 45556666777788888888888887765 566777777777776666655443
No 332
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.21 E-value=2e+02 Score=25.10 Aligned_cols=91 Identities=11% Similarity=-0.020 Sum_probs=43.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCC---------
Q 005802 231 ISGYVQNGDAEEGLKLFVRMGENGVRWNE-------HTFASALSACCG--LRNVKCAKEIHSWVLKNGLIS--------- 292 (676)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~--------- 292 (676)
+...++.|+.+....+++.+.+.|..++. .-.+.|..++.. .|+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 34455667777666666666666654433 223333333322 266666655555433322110
Q ss_pred -chhHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 005802 293 -NPFVSSGIVDVYCKCENMNYAESMLLLKGV 322 (676)
Q Consensus 293 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 322 (676)
|..-.+ .+...+..|+.+.+..+++....
T Consensus 86 ~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 86 EFYQGHS-ALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp TTTTTCC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccCCC-HHHHHHHcCCHHHHHHHHHcCCC
Confidence 011112 23334455666666666655443
No 333
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.08 E-value=1.2e+02 Score=25.58 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=8.6
Q ss_pred HHHhcCChhHHHHHHhh
Q 005802 201 ACCREGEMEMALKTFWR 217 (676)
Q Consensus 201 ~~~~~g~~~~A~~~~~~ 217 (676)
.|.+.|.+++|.++|++
T Consensus 126 VCiekg~Fk~A~eiLkr 142 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFER 142 (211)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHH
Confidence 44455555555555544
No 334
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.30 E-value=47 Score=20.92 Aligned_cols=42 Identities=7% Similarity=0.035 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCcccHHHHHHHHHhCCC--chHHHHHhccCCCCC
Q 005802 9 ALICHVQAIKAGLTLTTITTNQLIHIYSKHNL--LRESRKLFDEMPERN 55 (676)
Q Consensus 9 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~ 55 (676)
-.+.++.+++.|+++. ..-.++.+.|. ++.|.+++.+|.-|+
T Consensus 9 n~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 9 NRQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CHHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 3566788888898774 33345556665 899999988886554
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.96 E-value=3.2e+02 Score=23.17 Aligned_cols=19 Identities=5% Similarity=0.293 Sum_probs=10.6
Q ss_pred HHHHHhcCCChhHHHHHHHH
Q 005802 94 LCGYINAEGYEADALKLFIE 113 (676)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~ 113 (676)
+...++.|+.+ ....+++.
T Consensus 10 l~~A~~~g~~~-~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLD-ELKERILA 28 (231)
T ss_dssp HHHHHHHTCHH-HHHHHHHH
T ss_pred HHHHHHhCCHH-HHHHHHHh
Confidence 44445566666 55555554
No 336
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.93 E-value=2.5e+02 Score=21.92 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=9.6
Q ss_pred HHHHhcCChHHHHHHhcc
Q 005802 64 SACIKSHDLKQARSLFDS 81 (676)
Q Consensus 64 ~~~~~~g~~~~A~~~~~~ 81 (676)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334455556555555554
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.64 E-value=1.7e+02 Score=23.13 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=35.6
Q ss_pred HHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH
Q 005802 482 EEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL 545 (676)
Q Consensus 482 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 545 (676)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.++ +...+..|...-++.+...|-.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 345667777665432 3344444455566677777777655 4444555555556666666653
No 338
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.77 E-value=69 Score=27.37 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
..+..|.+.|.+++|.+++++.....|.+...-..|..+-.+
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 344579999999999999999988755543344444444333
No 339
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.77 E-value=3.3e+02 Score=22.98 Aligned_cols=46 Identities=15% Similarity=0.023 Sum_probs=33.1
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCC
Q 005802 228 NTLISGYVQ---NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLR 273 (676)
Q Consensus 228 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 273 (676)
-.+|+++.+ ..+++.|+-.+-+|++.|-.|....=..++.+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345666644 5889999999999999998777666566665555444
No 340
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.76 E-value=1.8e+02 Score=23.33 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=10.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 005802 361 ALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m 382 (676)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444455555555555544
No 341
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.37 E-value=2.6e+02 Score=21.69 Aligned_cols=61 Identities=7% Similarity=0.034 Sum_probs=39.0
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005802 249 RMGENGVRWNEHTFASALSACCGLR-NVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENM 310 (676)
Q Consensus 249 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 310 (676)
.|.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 456677777665543 444555555 6677888888888877666666665566666665543
No 342
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.33 E-value=3.4e+02 Score=22.99 Aligned_cols=56 Identities=16% Similarity=-0.013 Sum_probs=31.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHhH--HHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005802 232 SGYVQNGDAEEGLKLFVRMGENGVRWNEHT--FASALSACCGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..
T Consensus 126 ~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 126 SFAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 3334455543 4444455565554321 123445556677888777777878777653
No 343
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.22 E-value=3.1e+02 Score=22.50 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.0
Q ss_pred HHHHHHHHHhCCCC
Q 005802 279 KEIHSWVLKNGLIS 292 (676)
Q Consensus 279 ~~~~~~~~~~~~~~ 292 (676)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 44555555555443
No 344
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.55 E-value=4.6e+02 Score=24.21 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=44.0
Q ss_pred HHhCCCCCc--HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 552 MKSIPTEED--AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 552 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
|......|. ..++.+.+..+.+.+++..|..+.++++++.|.. ...++|.+++..-.+.+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~~~ 258 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSMAS 258 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTSCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCCC
Confidence 444444442 3367788888999999999999999999998852 234568888887766543
No 345
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.53 E-value=1.8e+02 Score=23.26 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=35.8
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 005802 248 VRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMN 311 (676)
Q Consensus 248 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 311 (676)
+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR~~-IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQREE-VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHHHH-HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3455667666554432 33344444556667777777777666566666656666666666543
No 346
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.12 E-value=1.2e+02 Score=26.57 Aligned_cols=87 Identities=5% Similarity=-0.094 Sum_probs=49.8
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhc---CChHHHHHHHHhcCCCCc---------
Q 005802 265 ALSACCGLRNVKCAKEIHSWVLKNGLISNP-------FVSSGIVDVYCKC---ENMNYAESMLLLKGVRNS--------- 325 (676)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~--------- 325 (676)
.+...+..|+.+.+..+++.+.+.|..++. .-.+.|.. .+.. |+.+.+..+++....++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 344556778998888888888888765543 22333433 3344 777777776665432210
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHhccC
Q 005802 326 ----FSISSMIVGYSLQGNMEEARRHFDSLT 352 (676)
Q Consensus 326 ----~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (676)
..-.+.+...+..|+.+-+.-+++.-.
T Consensus 84 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 84 TDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 112233444455667766666666533
No 347
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.84 E-value=3.1e+02 Score=21.60 Aligned_cols=20 Identities=0% Similarity=-0.137 Sum_probs=10.5
Q ss_pred HHHHHHhcCChhHHHHHHhh
Q 005802 198 MVAACCREGEMEMALKTFWR 217 (676)
Q Consensus 198 l~~~~~~~g~~~~A~~~~~~ 217 (676)
.+...+..|+.+-+..+++.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~ 64 (165)
T 3twr_A 45 PLHFAAGYNRVSVVEYLLQH 64 (165)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcChHHHHHHHHhc
Confidence 34444556666555555544
No 348
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.77 E-value=3.9e+02 Score=22.64 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=44.1
Q ss_pred eeHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCC-----hHHHHHHHHHHHHhCCC
Q 005802 225 VSWNTLISGYVQ---NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRN-----VKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 225 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 291 (676)
..+-.+|+++.+ ..+++.|+-.+-+|.+.| .|....=..++.+.-..|. ...|...++.....|.+
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 344556666654 588999999999999999 7766665666666655554 23455555555666653
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.70 E-value=1.8e+02 Score=22.48 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=22.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCC
Q 005802 230 LISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLR 273 (676)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 273 (676)
++..+...+..-.|.++++.+.+.+...+..|..-.|+.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555556666666665554444445444444444433
No 350
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.70 E-value=2.1e+02 Score=19.60 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=32.5
Q ss_pred HHHHHCCCCCCHhHHHHHHHHhhccC-cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcC
Q 005802 482 EEMLEKGIKPDAVTFVAILSAFRHCG-SVEMGEKYFNSMTADYKISPETDHYACMIDLYGRAN 543 (676)
Q Consensus 482 ~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 543 (676)
+.|.+.|++++..-. .++..+...+ ..-.+.++++.+.+. +...+..|....+..+.+.|
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCC
Confidence 345567777665543 3445555443 445566677766544 43445555555555555555
No 351
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.61 E-value=1.4e+02 Score=19.45 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhCCCCCcccHHHHHHHH-HhCC
Q 005802 6 LKEALICHVQAIKAGLTLTTITTNQLIHIY-SKHN 39 (676)
Q Consensus 6 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g 39 (676)
.++|.+.|-.|++..--+...+|...++.+ ++-.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 467888888888777666778999999888 5543
No 352
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.46 E-value=2.4e+02 Score=22.41 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH
Q 005802 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL 545 (676)
Q Consensus 483 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 545 (676)
.+.+.|++++..-. .++..+...+..-.|.++++.+.++ +...+..|.-.-++.+...|-.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 45556666554422 3344444445556677777777555 4444544444455666666643
No 353
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.37 E-value=4.4e+02 Score=23.12 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=9.1
Q ss_pred HHhcCChHHHHHHHHhcC
Q 005802 304 YCKCENMNYAESMLLLKG 321 (676)
Q Consensus 304 ~~~~g~~~~a~~~~~~~~ 321 (676)
.++.|+.+.+.-+++...
T Consensus 240 A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 240 AASSGKIGVLAYILQREI 257 (273)
T ss_dssp HHHTTCHHHHHHHHHHHT
T ss_pred HHHhChHHHHHHHHHCCC
Confidence 344555555555555444
No 354
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=20.35 E-value=4.6e+02 Score=23.32 Aligned_cols=161 Identities=9% Similarity=-0.003 Sum_probs=80.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc-cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH-CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 542 (676)
++...-+.+++++..+..+++.+.|...+..--+.|--+|-. .|....+++++..+.++-....+. ....++..|.+.
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~-~~~~~i~~yr~k 115 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGE-DKLKMIREYRQM 115 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccH-HHHHHHHHHHHH
Confidence 455567778899888888888887777776655555555533 244555666666554331111121 122233333211
Q ss_pred ------CCHHHHHHHHHhCC----CCCcHHH-HHHHHHHHH-----------HhCCHhHHHHHHHHHHcc-----cCCCC
Q 005802 543 ------NQLEKAIEFMKSIP----TEEDAVI-LGSFLNVCR-----------LNRNAELAGEAEEKLLRL-----EGNNK 595 (676)
Q Consensus 543 ------g~~~~A~~~~~~~~----~~~~~~~-~~~l~~~~~-----------~~~~~~~a~~~~~~~~~~-----~p~~~ 595 (676)
.--.+.+.++++.. ..+...+ |..+-.-|. +..-.+.+...|+.+.++ .|.+|
T Consensus 116 Ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThP 195 (261)
T 3ubw_A 116 VETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHP 195 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 01234445554443 1121111 111111111 112246677777776643 55555
Q ss_pred ccHHHHHH----HHHhcCChhHHHHHHHHHHhCC
Q 005802 596 ARYVQLAN----VYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 596 ~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.-.-...+ .|.-.++.++|.++-+..-+..
T Consensus 196 irLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 196 IRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 32221111 1344699999998877775543
Done!