BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005804
(676 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359484359|ref|XP_002280934.2| PREDICTED: uncharacterized protein LOC100242283 [Vitis vinifera]
gi|297738821|emb|CBI28066.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/682 (64%), Positives = 527/682 (77%), Gaps = 13/682 (1%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYL----PSIRLFCKCSHAHA 56
MA G +VS+Q+R TS ++R+ S KCR SQ PS R FC+CSH
Sbjct: 1 MASGFVVSSQARVTSNFAVASISRVL--STKCRNSLISSQLCSSRAPSNRFFCECSH--- 55
Query: 57 VEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEA 116
++ D KY+E FSRRMAMAGLKPHHRIALGVSGGPDSMALC+LTA WKT G N GE+
Sbjct: 56 LQDPVDFIKYKEVFSRRMAMAGLKPHHRIALGVSGGPDSMALCILTADWKTNGLNTAGES 115
Query: 117 GEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR 176
FIDGLLAI VDHGLR ESK+EANIV HRVSDMGIRCEI +CDWLDG+PKQGHLQEAAR
Sbjct: 116 RGFIDGLLAIIVDHGLRAESKDEANIVRHRVSDMGIRCEIAQCDWLDGKPKQGHLQEAAR 175
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
+MRY++FQ VCIQHQIGVLL+AHHADDQ ELFILRLSR+SGVLGLAGMAF+SQ+FS+Y
Sbjct: 176 EMRYQIFQNVCIQHQIGVLLVAHHADDQVELFILRLSRDSGVLGLAGMAFASQLFSTYTN 235
Query: 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 296
+ N+SILLVRPLL+FSK+D+YKIC+GGN++WVEDPTN++P F RNRIR+SL +L
Sbjct: 236 YFDEASDNYSILLVRPLLEFSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLP 295
Query: 297 SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLS 356
SC+FK ELQAVISACR+TR+YV+ +CSNLINE V+VM QGYAVIDLEIL+PSKIEDI LS
Sbjct: 296 SCTFKYELQAVISACRKTRAYVDQICSNLINEVVSVMAQGYAVIDLEILHPSKIEDICLS 355
Query: 357 KFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCS 416
KF+ALVLQFI QR RPVRGSTSKLLL YIRTFPCKTSLTAAGCYLC P S+GTK LVC
Sbjct: 356 KFIALVLQFISQRHRPVRGSTSKLLLDYIRTFPCKTSLTAAGCYLCAAPRSKGTKLLVCC 415
Query: 417 SIDGPLPSKLELFQIHSDGEQRHCV-TDVEQILEDAKSYSNHLIQDASDKLLLSMI-SDS 474
S++ PLPSK+ELF H +H + ++VEQI+ D K+ S++L+ DASD L + S+S
Sbjct: 416 SVNSPLPSKMELFYRHCYETHKHYIPSEVEQIIVDGKANSDNLVPDASDVQFLDVASSES 475
Query: 475 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQL-MHAVECVGTYPSIPLQP 533
+ EAKR N+LSESTY NIL LQ +E K FK ++ SD L MH V V T S+PLQP
Sbjct: 476 ILVEAKRRNILSESTYSNILSLQEDETKHFKSKTKTISDHDLKMHGVHTVSTSLSLPLQP 535
Query: 534 GQVCYFMNRFFVTWKLI-KENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRH 592
GQ+CYFMNRF V+W L K +G ++ E + L S + +C C+VG +MVAE+RH
Sbjct: 536 GQICYFMNRFLVSWNLSNKISGDKSPVEEASCNRDLAGKSLHHFCRHCMVGHDMVAEVRH 595
Query: 593 MIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSI 652
M+++DWLYLAKLSK + N ERV + Q EKT LC+D+ RLSA+RA+ SLKSI
Sbjct: 596 MVDADWLYLAKLSKHQNLENHEKERVILASAMEQISEKTILCSDFARLSAERALHSLKSI 655
Query: 653 PVAARRSLPVLVSSHGQLLSIP 674
PVAARRSLPVL++SHG LLSIP
Sbjct: 656 PVAARRSLPVLINSHGLLLSIP 677
>gi|255546471|ref|XP_002514295.1| raspberry3, putative [Ricinus communis]
gi|223546751|gb|EEF48249.1| raspberry3, putative [Ricinus communis]
Length = 679
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/675 (60%), Positives = 490/675 (72%), Gaps = 27/675 (4%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYL 60
MARG I+S+QSR V+ + KC+ TR F C + +
Sbjct: 1 MARGLILSSQSR---------VSLVPFLPPKCQKFMTR---------FFSCKSSSQI--- 39
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
DM KYREAFS RMAMAGLKP HRIA+GVSGGPDS+ALCVLTA WK+ G ++ F+
Sbjct: 40 -DMDKYREAFSHRMAMAGLKPQHRIAIGVSGGPDSVALCVLTAAWKSAGV---AKSEGFV 95
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLLAI VDHGLR ESKEEA +VS RVSDMG+RCEI C W GRPKQGHLQE ARDMRY
Sbjct: 96 DGLLAIVVDHGLRPESKEEAQVVSRRVSDMGVRCEIACCSWYRGRPKQGHLQEEARDMRY 155
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
+ +C+QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAF+SQIF S A +
Sbjct: 156 QKLHSICLQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFTSQIFFSNAQPNDE 215
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 300
LKN SILL RPLL FSK+DMYKICQ +DWVEDPTN+SPL+ RNRIRMSLG+LSS +F
Sbjct: 216 GLKNESILLARPLLHFSKEDMYKICQVAGQDWVEDPTNQSPLYARNRIRMSLGNLSSLTF 275
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLA 360
KSELQAVISACR+TR++V+ C NLIN+AVT++ QGYA+IDLEILNPSK+ DI L KFLA
Sbjct: 276 KSELQAVISACRKTRAFVDQTCRNLINQAVTLIHQGYAIIDLEILNPSKVMDICLVKFLA 335
Query: 361 LVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDG 420
LVLQFI QR +PVRGS +LLL YI TFPCK SLT AGCYLCP PGSRGTK LVC S+D
Sbjct: 336 LVLQFISQRYKPVRGSALRLLLDYICTFPCKKSLTVAGCYLCPAPGSRGTKVLVCCSVDC 395
Query: 421 PLPSKLELFQIHSDGEQRHCVT-DVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEA 479
PLPS++EL +HSDGE R VT ++EQIL D KSY +H + ASD L S+SV TEA
Sbjct: 396 PLPSRMELTSMHSDGELRQYVTSELEQILADGKSYLDHFVPGASDVYFLDSTSESVLTEA 455
Query: 480 KRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYF 539
K+ N++SESTY+NILLLQR EIK FK +E + + VE V T S +PGQ+CYF
Sbjct: 456 KKVNIISESTYRNILLLQRNEIKHFKAKTEDNVNYVPKNEVESV-TASSSKFRPGQICYF 514
Query: 540 MNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWL 599
MNRF +TW+L K + F + +G ++ + + SC + M AE+RHMIE DWL
Sbjct: 515 MNRFLITWQLRKYILTTGFSVQSCCGWEVGGENCHHHSWSCTLDHGMFAEVRHMIECDWL 574
Query: 600 YLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRS 659
LAKL K S +L +R+F + Q +EK+NL +Y R SA+RA+ +LKSIP+AAR+S
Sbjct: 575 DLAKLLKCASLDDLHQQRIFTACEMEQTMEKSNLYLEYLRFSAERALTALKSIPIAARKS 634
Query: 660 LPVLVSSHGQLLSIP 674
LPVLV+ G LLSIP
Sbjct: 635 LPVLVNHQGHLLSIP 649
>gi|356522718|ref|XP_003529993.1| PREDICTED: uncharacterized protein LOC100818654 [Glycine max]
Length = 710
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/681 (58%), Positives = 485/681 (71%), Gaps = 13/681 (1%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKC----RIPFTRSQYLPSIRLFCKCSHAHA 56
MARG I+S+ + T +T L +++ S ++ +PS F S
Sbjct: 1 MARGLILSSPTLTATTCLFASISKTPPKSFNLSFGLKLIHHHYHLIPSPCSFSVDSSPSQ 60
Query: 57 VEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQ-NGE 115
D++KY E FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKT G + E
Sbjct: 61 CS--IDISKYTETFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTAGADAVTSE 118
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA 175
G FIDGLLAI VDHGLR ESKEEANIVSHRVS MGIRCEI CDW GRPKQG LQEAA
Sbjct: 119 NGGFIDGLLAIIVDHGLRAESKEEANIVSHRVSKMGIRCEIACCDWPSGRPKQGQLQEAA 178
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R+MRY++FQ+VC QH+IGVLLIA HADDQAELFILRLSRNSGVLGLAGM F+SQIF +Y
Sbjct: 179 REMRYQIFQEVCAQHRIGVLLIAQHADDQAELFILRLSRNSGVLGLAGMPFTSQIFPTYT 238
Query: 236 YSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
S + N ILLVRPLL+FSK+DMYKICQGG+ +WVEDPTN+SPL+ RNRIRM L +L
Sbjct: 239 QSYREVQANQGILLVRPLLEFSKEDMYKICQGGSENWVEDPTNQSPLYARNRIRMVLNNL 298
Query: 296 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 355
SS +FK ELQA+ISACR TR+YV+ + +LI +AV + D GY VIDL+IL P K+EDI L
Sbjct: 299 SSSAFKFELQALISACRITRTYVDQIAYSLIRDAVVIKDHGYVVIDLQILCPLKVEDICL 358
Query: 356 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 415
KFL+L+LQF+ QRQR +RGS KLL+ YIRTFPCK S+TAAGCYLCP PGSRG++ LVC
Sbjct: 359 MKFLSLILQFVSQRQRQIRGSALKLLMDYIRTFPCKNSVTAAGCYLCPDPGSRGSRVLVC 418
Query: 416 SSIDG-PLPSKLELFQIHSDGEQRHCV-TDVEQILEDAKSYSNHLIQDASDKLLLSMISD 473
+G P K+E F+ S G+Q CV ++E+I+E KSY+NHL+ DASD L + +
Sbjct: 419 CCSNGCAFPLKIEYFESQSQGQQGCCVANELEKIIEAEKSYANHLVLDASDVHFLDVNPE 478
Query: 474 SVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQP 533
V TEAKR N++ ESTY +I LQ++E F+ +EV SDS H V T S LQP
Sbjct: 479 LVLTEAKRLNIIGESTYNSIFALQKQETAHFRSKTEVISDSASKHGV----TPFSKSLQP 534
Query: 534 GQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHM 593
GQ CYFM+RF +TWKL + V + LGE++ + C+SC+ G+ V E+RHM
Sbjct: 535 GQFCYFMDRFILTWKLKNNIDNDKLSGLVDYEMDLGEETRSLCCTSCVAGNNKVPEVRHM 594
Query: 594 IESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIP 653
IESDWLYLA+LSK S N P V T Q +++T+ C Y +SAK+A+ LKSIP
Sbjct: 595 IESDWLYLAELSKYPLSKNFPQYEVKSVNGTKQIMDRTSPCLHYASVSAKQALRLLKSIP 654
Query: 654 VAARRSLPVLVSSHGQLLSIP 674
VAARRSLPVL++ GQLLSIP
Sbjct: 655 VAARRSLPVLINQQGQLLSIP 675
>gi|356529626|ref|XP_003533390.1| PREDICTED: uncharacterized protein LOC100777173 [Glycine max]
Length = 705
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/615 (62%), Positives = 461/615 (74%), Gaps = 6/615 (0%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQ-NGEAGEFI 120
DM+K E FSRRMAMAGL+PHHRIALGVSGGPDSMALCVLTAGWKT G + E G FI
Sbjct: 65 DMSKNTETFSRRMAMAGLEPHHRIALGVSGGPDSMALCVLTAGWKTAGADAVTPENGGFI 124
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLLAI VDHGLR ESKEEANIVSHRVS MGIRCEI CDW GRPKQG LQEAAR+MRY
Sbjct: 125 DGLLAIIVDHGLRAESKEEANIVSHRVSKMGIRCEIACCDWPSGRPKQGQLQEAAREMRY 184
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
++FQ+VC QH+IGVLLIAHHADDQAELFILRLSRNSGVLGLAGM F+SQIF +Y S +
Sbjct: 185 QIFQEVCAQHRIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMPFTSQIFPTYKQSYRE 244
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 300
N IL+VRPLL+FSK+DMYKICQGG+ +WVEDPTN+SPL+VRNRIRM L +LSS +F
Sbjct: 245 VQANQGILVVRPLLEFSKEDMYKICQGGSENWVEDPTNQSPLYVRNRIRMVLNNLSSSTF 304
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLA 360
K ELQA+ISACR TR+YV+ + +LI +AV + D GYAVIDL+IL P K+EDI L KFL+
Sbjct: 305 KFELQALISACRITRTYVDQIGYSLIGDAVVIKDHGYAVIDLQILCPLKVEDICLMKFLS 364
Query: 361 LVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALV-CSSID 419
LVLQF+ QRQR +RG+ KLL+ YIRTFPCK S+TAAGCYLCP PGSRG + LV C S D
Sbjct: 365 LVLQFVSQRQRQIRGNALKLLMDYIRTFPCKNSVTAAGCYLCPDPGSRGFRVLVCCCSDD 424
Query: 420 GPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEA 479
LPSK+E F+ HS G+ ++ +I+E KSY+NHL+ DASD L + + V TEA
Sbjct: 425 CALPSKIEYFESHSQGQGCCVANELGEIIEAEKSYANHLVLDASDVHFLDVNPELVLTEA 484
Query: 480 KRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYF 539
K+ N++ ESTY +L LQ++E F+ +EV SDS H V T S LQPGQ CY
Sbjct: 485 KKLNIIGESTYNTVLALQKQETAHFRSKTEVISDSASKHGV----TPFSKSLQPGQFCYL 540
Query: 540 MNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWL 599
M+RF +TWKL + V + +GE++ + C+SC+ G+ V E+RHMIESDWL
Sbjct: 541 MDRFILTWKLKTNTDNDELSGLVGYEMDMGEETRSLCCTSCVTGNNKVPEVRHMIESDWL 600
Query: 600 YLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRS 659
YLA+LSK S N P V T + +++T+LC Y +SAK+A+ LKSIPVAARRS
Sbjct: 601 YLAELSKYPLSKNFPQYEVESVNGTERIMDRTSLCLHYASVSAKQALRLLKSIPVAARRS 660
Query: 660 LPVLVSSHGQLLSIP 674
LPVL++ GQLLSIP
Sbjct: 661 LPVLINQQGQLLSIP 675
>gi|357500613|ref|XP_003620595.1| tRNA(Ile)-lysidine synthase [Medicago truncatula]
gi|357500787|ref|XP_003620682.1| tRNA(Ile)-lysidine synthase [Medicago truncatula]
gi|355495610|gb|AES76813.1| tRNA(Ile)-lysidine synthase [Medicago truncatula]
gi|355495697|gb|AES76900.1| tRNA(Ile)-lysidine synthase [Medicago truncatula]
Length = 842
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/633 (57%), Positives = 448/633 (70%), Gaps = 28/633 (4%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNG-EAGEFI 120
DM KYR+ FSRRM MAG+KPHHRIALGVSGGPDS+ALCVLTAGWKT G N G ++ FI
Sbjct: 70 DMAKYRQVFSRRMDMAGIKPHHRIALGVSGGPDSIALCVLTAGWKTAGANSVGTDSSGFI 129
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR- 179
DGLLAI VDHGLR ESK+EANIV +RVS MGIRCEI CDW G+PKQGHLQ+AARDMR
Sbjct: 130 DGLLAIIVDHGLRAESKDEANIVRNRVSQMGIRCEIANCDWPSGKPKQGHLQKAARDMRR 189
Query: 180 -----------------YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA 222
Y++F VC +HQIGVL IAHHADDQAELFILRLSRNSGVLGLA
Sbjct: 190 WKTYVVNNCDREKMKEKYQVFHDVCAKHQIGVLFIAHHADDQAELFILRLSRNSGVLGLA 249
Query: 223 GMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPL 282
G F+SQIF + +S + N +LLVRPLL+FSK+DMYKIC+GG +WVEDPTN++ L
Sbjct: 250 GTPFTSQIFPMHTHSYCEVPANGGVLLVRPLLEFSKEDMYKICRGGTEEWVEDPTNQNQL 309
Query: 283 FVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDL 342
F RNRIR L LSS +FKSELQ VISACR+TR+YV+HVC +LI++AV + D GYAVIDL
Sbjct: 310 FTRNRIRRELNHLSSSAFKSELQRVISACRKTRAYVDHVCHSLIHQAVVIKDLGYAVIDL 369
Query: 343 EILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLC 402
+IL PSKIEDI+L KFL+LVLQF+ QRQR +RGS KLL+ Y+RT CK +TAAGCYLC
Sbjct: 370 QILCPSKIEDIYLLKFLSLVLQFVSQRQRQIRGSALKLLMDYLRTIQCKNCITAAGCYLC 429
Query: 403 PTPGSRGTKALVCSSIDGPLPSKLELFQIHS-DGEQRHCVTDVEQILEDAKSYSNHLIQD 461
P PGS+G++ LVC S+D LP K+E + S + H ++E+I+ED KS SNHL+ D
Sbjct: 430 PDPGSKGSRVLVCCSVDIALPLKMEFSETCSFRQHEYHVANELEKIIEDEKSNSNHLVLD 489
Query: 462 ASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVE 521
ASD L +SV EAKR N++SE T+ +IL+LQ++E RF+ SD H VE
Sbjct: 490 ASDVHFLDANPESVLDEAKRLNIISEPTFNSILVLQKQETNRFRSKVGAISDLASKHEVE 549
Query: 522 CVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCL 581
T LQPGQ CYFM+RF +TWKL + V L ++ N C+SC+
Sbjct: 550 -NATSSGNSLQPGQCCYFMDRFMLTWKLNDKMDRDVLSDLVDYGMDLSGEARNFCCTSCV 608
Query: 582 VGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLS 641
VG + V E+RHMIESDWLYLA+LS+ PLE + +EKT Y +S
Sbjct: 609 VGRDQVLEVRHMIESDWLYLAELSR-----YSPLENS--ANGNTKMMEKTASYLHYASVS 661
Query: 642 AKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 674
AK+A++ LKSIPVAARRSLPVL++ G+L+ IP
Sbjct: 662 AKKALVLLKSIPVAARRSLPVLINQQGKLICIP 694
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 415 CSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDS 474
CS+ PL ++L D + + + D KS SNHL+ ASD L +S
Sbjct: 731 CSNCGKPLQPTMKLSTQFIDPCFTNTKANKSLNISDEKSNSNHLVLYASDVYFLDANPES 790
Query: 475 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTS 512
+ EA+R N++SESTY +IL+L+ KLD +TS
Sbjct: 791 LLDEARRLNIISESTYNSILVLK-------KLDPFLTS 821
>gi|297831300|ref|XP_002883532.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp.
lyrata]
gi|297329372|gb|EFH59791.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp.
lyrata]
Length = 664
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/684 (54%), Positives = 460/684 (67%), Gaps = 60/684 (8%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFT-----RSQYLPSIRLFCKCSHAH 55
MARG + + R +STLLS + R+S S + FT +S++ RLFC +HA
Sbjct: 1 MARGLSLCSNGRKSSTLLSNSILRVSFS-FSPKTLFTSSYPHQSRHPKFSRLFC--NHA- 56
Query: 56 AVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE 115
V D TKY+E F++RMAMAGLKPHHRIALGVSGGPDSMALCVLTA WKT G + +
Sbjct: 57 CVPETVDETKYKELFNKRMAMAGLKPHHRIALGVSGGPDSMALCVLTAKWKTEGLSCVNK 116
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA 175
+ FIDGL+AI VDHGLR+ESK+EA +V RVS MGIRCEI CDW+DGRPK GHLQEAA
Sbjct: 117 SDGFIDGLVAIVVDHGLRQESKDEAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAA 176
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R+MRY++ VC +HQI VLLIAHHADDQAELFILRLSR+SGVLGLAG AF+S+IFS
Sbjct: 177 REMRYQMISNVCFRHQIEVLLIAHHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNL 236
Query: 236 YSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
+KN SILLVRPLLD K+DMYKICQ G +DWVEDPTNRS LFVRNRIR S+G+L
Sbjct: 237 QLDAKHIKNRSILLVRPLLDLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNL 296
Query: 296 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 355
S +FKSEL AVIS CRRTRS+V+ C++LI++ VTV D+GYA++DLE LNP++++DI L
Sbjct: 297 HSGNFKSELHAVISECRRTRSFVDKFCTDLISQTVTVTDKGYAILDLERLNPTEVKDICL 356
Query: 356 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 415
SK+LA VLQFI QR RPVRG+TSKLLL+YIR PC+TSLTAAGCYL P PGS+GTK +V
Sbjct: 357 SKYLAAVLQFISQRHRPVRGNTSKLLLNYIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVS 416
Query: 416 SSIDGPLPSKLELFQIHSDGEQRHCVT-DVEQILEDAKSYSNHLIQDASDKL----LLSM 470
S+D PLPSK EL I + Q+ + D+ +I+ DA S S+H +A KL L +
Sbjct: 417 CSVDCPLPSKTELVNICVNEAQKKPTSDDLSKIISDATSISDH---EAPSKLFEVHFLVV 473
Query: 471 ISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIP 530
S+SV ++A+ N+LSESTY I LLQR E RF +E S + H + ++
Sbjct: 474 ASESVLSKARELNLLSESTYTTIGLLQRNETNRFITTTEDKSVDESEHGTNIASSSDNVL 533
Query: 531 LQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAEL 590
L PGQ YFMNRF + W L A C +C V E+
Sbjct: 534 LLPGQNLYFMNRFLIRWNLSDHQCDEA------------------GCGNCPVRTATSMEV 575
Query: 591 RHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLK 650
RHM+ESDWLYLA+LSK + +++ S+++A+ SLK
Sbjct: 576 RHMVESDWLYLAELSKCSN-------------------------SNHSMSSSQKALRSLK 610
Query: 651 SIPVAARRSLPVLVSSHGQLLSIP 674
IP AAR+SLPVL++ G LLS+P
Sbjct: 611 LIPAAARKSLPVLINHCGLLLSVP 634
>gi|42572523|ref|NP_974357.1| protein raspberry 3 [Arabidopsis thaliana]
gi|332643401|gb|AEE76922.1| protein raspberry 3 [Arabidopsis thaliana]
Length = 660
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/680 (53%), Positives = 452/680 (66%), Gaps = 56/680 (8%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSS-----VKCRIPFTRSQYLPSIRLFCKCSHAH 55
MARG + + R +STLLS + R+S+S C P S RLFC +HA
Sbjct: 1 MARGLSLCSNGRKSSTLLSNSIPRVSISFSPKTLFTCSYPLQSRHPKFSQRLFC--NHA- 57
Query: 56 AVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE 115
V D T+Y+E F++RM MAGLKPH+RIALGVSGGPDSMALCVLTA WKT G + +
Sbjct: 58 CVPETVDETRYKELFNKRMDMAGLKPHNRIALGVSGGPDSMALCVLTAKWKTEGLSCVNK 117
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA 175
FIDGL+AI VDHGLR+ESK+EA +V RVS MGIRCEI CDW+DGRPK GHLQEAA
Sbjct: 118 TDGFIDGLVAIVVDHGLRQESKDEAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAA 177
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R+MRY + VC + QI VLLIAHHADDQAELFILRLSR+SGVLGLAG AF+S+IFS
Sbjct: 178 REMRYEMISNVCFRQQIEVLLIAHHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNL 237
Query: 236 YSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
+KN SI LVRPLLD K+DMYKICQ G +DWVEDPTNRS LFVRNRIR S+G+L
Sbjct: 238 QLDAKHMKNQSIRLVRPLLDLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNL 297
Query: 296 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 355
S SFKSELQAVIS CRRTRS+V+ VC++LI++ VTV D+GYA++DLE LNPS ++DI L
Sbjct: 298 ESGSFKSELQAVISECRRTRSFVDKVCTDLIHQTVTVTDKGYAILDLERLNPSGVKDICL 357
Query: 356 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 415
SK+L VLQFI QRQRP+RG+TSKLLL+YIR PC+TSLTAAGCYL P PGS+GTK +V
Sbjct: 358 SKYLFAVLQFISQRQRPIRGNTSKLLLNYIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVS 417
Query: 416 SSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKL-LLSMISDS 474
S+D PLPSK EL I + D+ QI+ DAKS+S+H+ + ++ L + S+S
Sbjct: 418 CSVDCPLPSKTELLNISFNETPSD---DLGQIIADAKSFSDHVAPTSLFEVQFLDVASES 474
Query: 475 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPG 534
V ++A+ N+LSESTY I LLQR+E KRF +E S +L H + + L G
Sbjct: 475 VLSKARELNLLSESTYTTIGLLQRDETKRFLTKTEEKS-VELEHGTNIAASSDKVHLCLG 533
Query: 535 QVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMI 594
Q YFMNRF + W L + A C +C V E+RHM+
Sbjct: 534 QNLYFMNRFLIRWNLSDHQCNEA------------------DCRNCPVSTATSMEVRHMV 575
Query: 595 ESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPV 654
E DWLYLA+LSK + +++ S+++A+ SLK IP
Sbjct: 576 EPDWLYLAELSKCST-------------------------SNHSISSSQKALRSLKLIPA 610
Query: 655 AARRSLPVLVSSHGQLLSIP 674
AAR+SLPVLV+ G LL IP
Sbjct: 611 AARKSLPVLVNHCGLLLCIP 630
>gi|19071761|gb|AAL80000.1| RASPBERRY3 [Arabidopsis thaliana]
Length = 662
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/680 (53%), Positives = 453/680 (66%), Gaps = 56/680 (8%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSS-----VKCRIPFTRSQYLPSIRLFCKCSHAH 55
MARG + + R +STLL + R+S+S C P S RLFC +HA
Sbjct: 1 MARGLSLCSNGRKSSTLLLNSIPRVSISFSPKTLFTCSYPLQSRHPEFSQRLFC--NHA- 57
Query: 56 AVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE 115
V D T+Y+E F++RM MAGLKPH+RIALGVSGGPDSMALCVLTA WKT G + +
Sbjct: 58 CVPETVDETRYKELFNKRMDMAGLKPHNRIALGVSGGPDSMALCVLTAKWKTQGLSCVNK 117
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA 175
FIDGL+AI VDHGLR+ESK+EA +V RVS MGIRCEI CDW+DGRPK GHLQEAA
Sbjct: 118 TDGFIDGLVAIVVDHGLRQESKDEAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAA 177
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R+MRY + VC + QI VLLIAHHADDQAELFILRLSR+SGVLGLAG AF+S+IFS
Sbjct: 178 REMRYEMISNVCFRQQIEVLLIAHHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNL 237
Query: 236 YSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
+KN SI LV PLLDF K+DMYKICQ G +DWVEDPTNRS LFVRNRIR S+G+L
Sbjct: 238 QLDAKHMKNQSIRLVGPLLDFWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNL 297
Query: 296 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 355
S SFKSELQAVIS CRRTRS+V+ VC++LI++ VT D+GYA++DLE LNPS ++DI L
Sbjct: 298 QSGSFKSELQAVISECRRTRSFVDKVCTDLIHQTVTATDKGYAILDLERLNPSGVKDICL 357
Query: 356 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 415
SK+L+ VLQFI QRQRP+RG+TSKLLL+YIR PC+TSLTAAGCYL P PGS+GTK +V
Sbjct: 358 SKYLSAVLQFISQRQRPIRGNTSKLLLNYIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVS 417
Query: 416 SSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKL-LLSMISDS 474
S+D PLPSK EL I + D+ QI+ DAKS+S+H+ + ++ L + S+S
Sbjct: 418 CSVDCPLPSKTELLNISFNETPSD---DLGQIIADAKSFSDHVAPTSLFEVQFLDVASES 474
Query: 475 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPG 534
V ++A+ N+LSESTY I LLQR+E KRF +E S +L H + + + L G
Sbjct: 475 VLSKARELNLLSESTYTTIGLLQRDETKRFLTKTEEKS-VELEHGINIPASSDKVHLCLG 533
Query: 535 QVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMI 594
Q YFMNRF + W L N+ G C +C V E+RHM+
Sbjct: 534 QNLYFMNRFLIRWNLSDHQC---------NEAG---------CRNCPVSTATSMEVRHMV 575
Query: 595 ESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPV 654
ESDWLYL +LSK + +++ S+++A+ SLK IP
Sbjct: 576 ESDWLYLGELSKCST-------------------------SNHSISSSQKALRSLKLIPA 610
Query: 655 AARRSLPVLVSSHGQLLSIP 674
AAR+SLPVL++ G LL IP
Sbjct: 611 AARKSLPVLINHCGLLLCIP 630
>gi|9294051|dbj|BAB02008.1| unnamed protein product [Arabidopsis thaliana]
Length = 614
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 329/591 (55%), Positives = 402/591 (68%), Gaps = 48/591 (8%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
ALGVSGGPDSMALCVLTA WKT G + + FIDGL+AI VDHGLR+ESK+EA +V
Sbjct: 58 ALGVSGGPDSMALCVLTAKWKTEGLSCVNKTDGFIDGLVAIVVDHGLRQESKDEAELVCS 117
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
RVS MGIRCEI CDW+DGRPK GHLQEAAR+MRY + VC + QI VLLIAHHADDQA
Sbjct: 118 RVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHADDQA 177
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
ELFILRLSR+SGVLGLAG AF+S+IFS +KN SI LVRPLLD K+DMYKIC
Sbjct: 178 ELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYKIC 237
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNL 325
Q G +DWVEDPTNRS LFVRNRIR S+G+L S SFKSELQAVIS CRRTRS+V+ VC++L
Sbjct: 238 QWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCTDL 297
Query: 326 INEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 385
I++ VTV D+GYA++DLE LNPS ++DI LSK+L VLQFI QRQRP+RG+TSKLLL+YI
Sbjct: 298 IHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLNYI 357
Query: 386 RTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVE 445
R PC+TSLTAAGCYL P PGS+GTK +V S+D PLPSK EL I + D+
Sbjct: 358 RAIPCRTSLTAAGCYLSPAPGSKGTKIIVSCSVDCPLPSKTELLNISFNETPSD---DLG 414
Query: 446 QILEDAKSYSNHLIQDASDKL-LLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRF 504
QI+ DAKS+S+H+ + ++ L + S+SV ++A+ N+LSESTY I LLQR+E KRF
Sbjct: 415 QIIADAKSFSDHVAPTSLFEVQFLDVASESVLSKARELNLLSESTYTTIGLLQRDETKRF 474
Query: 505 KLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHN 564
+E S +L H + + L GQ YFMNRF + W L + A
Sbjct: 475 LTKTEEKS-VELEHGTNIAASSDKVHLCLGQNLYFMNRFLIRWNLSDHQCNEA------- 526
Query: 565 DGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKT 624
C +C V E+RHM+E DWLYLA+LSK +
Sbjct: 527 -----------DCRNCPVSTATSMEVRHMVEPDWLYLAELSKCST--------------- 560
Query: 625 GQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIPV 675
+++ S+++A+ SLK IP AAR+SLPVLV+ G LL IPV
Sbjct: 561 ----------SNHSISSSQKALRSLKLIPAAARKSLPVLVNHCGLLLCIPV 601
>gi|222622571|gb|EEE56703.1| hypothetical protein OsJ_06178 [Oryza sativa Japonica Group]
Length = 693
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 289/624 (46%), Positives = 400/624 (64%), Gaps = 30/624 (4%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQN----GEAG- 117
+ Y AF+RRMA+AG+ PHHR+A+GVSGGPDSMALCVL A WK G + GE G
Sbjct: 49 LAPYHRAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGV 108
Query: 118 -EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR 176
F+DGLL + VDHGLR ES +EA +V RV MG+ CEI C+W +GRPK GH+QEAAR
Sbjct: 109 SGFVDGLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAR 168
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
+MRY+ +CI+ +I VLLIAHH+DDQAELF+LRLSRNSGVLGLAG AF SQ+F+
Sbjct: 169 EMRYQKLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLK 228
Query: 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 296
D+ + ++LVRP+L+FSKDDMYKICQG N WVEDPTN S L+VRNRIR SL LS
Sbjct: 229 YDGDNFSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLS 288
Query: 297 -SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 355
+F+SEL +I ACR TR+++++ CS ++ +++T+M+ GYAVIDLE L+P ++D+FL
Sbjct: 289 IEGTFQSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFL 348
Query: 356 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 415
S++LA VLQF+ QR RP+RG +++LL+ YIRT PCK +L+ AGCYLC P S+GTK LVC
Sbjct: 349 SRYLAYVLQFVSQRHRPLRGRSAQLLIDYIRTIPCKAALSVAGCYLCAVPRSKGTKVLVC 408
Query: 416 SSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLL-SMISDS 474
S+D S + + S +Q V+++ QI+ +A+ YS+ Q+ + S S
Sbjct: 409 CSVDLMESSSVHMSYKCSYVKQPPPVSEINQIVTEARIYSDQFRQNCPNTPFPSSKFSTD 468
Query: 475 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIP---L 531
V +AK ++ + T + + LQ +E ++F E + L ++P + L
Sbjct: 469 VLNKAKDLKLIGDCTLEKLNYLQTDEHQKFITTKEHGQEQYLEKT-----SFPYLEVLNL 523
Query: 532 QPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELR 591
PG+ C+FM RF +TW+ EV +G DS C C+V + +R
Sbjct: 524 WPGETCHFMGRFLITWRT----------SEVVVNGMCLHDSQKHTCQYCMVNQDGSLAIR 573
Query: 592 HMIESDWLYLAKLSKGLS-SGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLK 650
HM ++DWL+LA++ K S N D+ K+ + + Y +LSA +++ L+
Sbjct: 574 HMFDTDWLFLAEVCKIHSLEENKNYSNALCDKLEDAKLVQH---SRYLQLSAMKSLQILR 630
Query: 651 SIPVAARRSLPVLVSSHGQLLSIP 674
SIP ARR LPVL +S G +LSIP
Sbjct: 631 SIPAPARRMLPVLTNSQGAVLSIP 654
>gi|218190457|gb|EEC72884.1| hypothetical protein OsI_06667 [Oryza sativa Indica Group]
Length = 694
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 289/624 (46%), Positives = 400/624 (64%), Gaps = 30/624 (4%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQN----GEAG- 117
+ Y AF+RRMA+AG+ PHHR+A+GVSGGPDSMALCVL A WK G + GE G
Sbjct: 50 LAPYHRAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGV 109
Query: 118 -EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR 176
F+DGLL + VDHGLR ES +EA +V RV MG+ CEI C+W +GRPK GH+QEAAR
Sbjct: 110 SGFVDGLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAR 169
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
+MRY+ +CI+ +I VLLIAHH+DDQAELF+LRLSRNSGVLGLAG AF SQ+F+
Sbjct: 170 EMRYQKLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLK 229
Query: 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 296
D+ + ++LVRP+L+FSKDDMYKICQG N WVEDPTN S L+VRNRIR SL LS
Sbjct: 230 YDGDNFSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLS 289
Query: 297 -SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 355
+F+SEL +I ACR TR+++++ CS ++ +++T+M+ GYAVIDLE L+P ++D+FL
Sbjct: 290 IEGTFQSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFL 349
Query: 356 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC 415
S++LA VLQF+ QR RP+RG +++LL+ YIRT PCK +L+ AGCYLC P S+GTK LVC
Sbjct: 350 SRYLAYVLQFVSQRHRPLRGRSAQLLIDYIRTIPCKAALSVAGCYLCAVPRSKGTKVLVC 409
Query: 416 SSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLL-SMISDS 474
S+D S + + S +Q V+++ QI+ +A+ YS+ Q+ + S S
Sbjct: 410 CSVDLMESSSVHMSYKCSYVKQPPPVSEINQIVTEARIYSDQFRQNCPNTPFPSSKFSTD 469
Query: 475 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIP---L 531
V +AK ++ + T + + LQ +E ++F E + L ++P + L
Sbjct: 470 VLNKAKDLKLIGDCTLEKLNYLQTDEHQKFITTKEHGQEQYLEKT-----SFPYLEVLNL 524
Query: 532 QPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELR 591
PG+ C+FM RF +TW+ EV +G DS C C+V + +R
Sbjct: 525 WPGETCHFMGRFLITWRT----------SEVVVNGMCLHDSQKHTCQYCMVNQDGSLAIR 574
Query: 592 HMIESDWLYLAKLSKGLS-SGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLK 650
HM ++DWL+LA++ K S N D+ K+ + + Y +LSA +++ L+
Sbjct: 575 HMFDTDWLFLAEVCKIHSLEENKNYSNALCDKLEDAKLVQH---SRYLQLSAMKSLQILR 631
Query: 651 SIPVAARRSLPVLVSSHGQLLSIP 674
SIP ARR LPVL +S G +LSIP
Sbjct: 632 SIPAPARRMLPVLTNSQGAVLSIP 655
>gi|224142149|ref|XP_002324421.1| predicted protein [Populus trichocarpa]
gi|222865855|gb|EEF02986.1| predicted protein [Populus trichocarpa]
Length = 461
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 274/472 (58%), Positives = 334/472 (70%), Gaps = 43/472 (9%)
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAELFILRLSRNSGVLGLAGMAF+SQ+FS + + KN IL+VRPLL FSK+ +YK
Sbjct: 2 QAELFILRLSRNSGVLGLAGMAFTSQMFSKSTHLYREGSKNKGILIVRPLLHFSKEILYK 61
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
ICQ +DWVEDPTN++ ++ RNRIRMSLG+LSS +F+SELQ VISACRRTR+YV+ +C+
Sbjct: 62 ICQESGQDWVEDPTNQNTVYARNRIRMSLGNLSSYTFQSELQGVISACRRTRAYVDQICN 121
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
NLIN+AVT++D GYA+IDLEILNPSK+ DI LSKF+AL+LQ++ QR RP+RGSTSKLLLH
Sbjct: 122 NLINQAVTIIDHGYAIIDLEILNPSKVTDICLSKFVALILQYVSQRNRPIRGSTSKLLLH 181
Query: 384 YIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCV-T 442
YIRT PCKTS TAAGCYLCP P SRGTK LVC S+D PL SK+EL +GEQ+H
Sbjct: 182 YIRTVPCKTSFTAAGCYLCPAPRSRGTKILVCCSVDCPLNSKMELIYPFLNGEQKHYFRN 241
Query: 443 DVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIK 502
++EQI+ D KSYSNH + DASD L S+SV +EAK N++SESTY++ILLL+REEIK
Sbjct: 242 ELEQIIADGKSYSNHFVPDASDVHFLDA-SESVISEAKTLNIISESTYRDILLLKREEIK 300
Query: 503 RFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREV 562
FK E D + + VE + PS LQPG+ CYFMNRF++TWKL E
Sbjct: 301 HFKHKVEDKVDYKSKNKVESIIASPSELLQPGKACYFMNRFWITWKLSNH--------EC 352
Query: 563 HNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDE 622
H+ SC +G + VAE+R M ESDWLYLAKLSK S NL ++V
Sbjct: 353 HS-------------CSCRIGHDKVAEVRRMSESDWLYLAKLSKCPSLDNLQQQKVLS-- 397
Query: 623 KTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 674
S ++A+ LKSIPVAARRSLPVLV+ G LLSIP
Sbjct: 398 ------------------STQKALEVLKSIPVAARRSLPVLVNHQGLLLSIP 431
>gi|357139233|ref|XP_003571188.1| PREDICTED: tRNA(Ile)-lysidine synthase-like [Brachypodium
distachyon]
Length = 519
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/439 (52%), Positives = 305/439 (69%), Gaps = 13/439 (2%)
Query: 39 SQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMAL 98
S LP RL C + +V + + Y ++F+RRMA+AG+ P HRIA+GVSGGPDSMAL
Sbjct: 12 SPCLPLRRLLRCCCTSSSVSAPSPIAPYHQSFARRMALAGIHPEHRIAVGVSGGPDSMAL 71
Query: 99 CVLTAGWKTGGFNQNG-EAGE-------FIDGLLAITVDHGLREESKEEANIVSHRVSDM 150
CVL A WK + G ++GE F+DGLL + VDHGLR ES EEA +V RV M
Sbjct: 72 CVLVAAWKKAVDGEPGRKSGEDGSVGPGFVDGLLGVVVDHGLRPESAEEAQVVRDRVHGM 131
Query: 151 GIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFIL 210
G+ CEI +C+W +GRPK GHLQEAAR++RY+ +CI+ +IGVLLIAHH+DDQAELF+L
Sbjct: 132 GVLCEIAKCEWPNGRPKLGHLQEAAREIRYQKLLDICIKQRIGVLLIAHHSDDQAELFVL 191
Query: 211 RLSRNSGVLGLAGMAFSSQIFS-SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269
RLSRNSGVLGLAG AF SQ+F+ + Y H+ + ILLVRP+L+FSKDDMYKICQG N
Sbjct: 192 RLSRNSGVLGLAGTAFVSQLFAPNLKYDGHN-FSRYGILLVRPMLEFSKDDMYKICQGSN 250
Query: 270 RDWVEDPTNRSPLFVRNRIRMSLGDLSS-CSFKSELQAVISACRRTRSYVEHVCSNLINE 328
WVEDPTN S + RNRIR SL LS+ +F SELQ +I AC+ TR++V++ CS ++ +
Sbjct: 251 NLWVEDPTNTSMQYARNRIRASLKCLSAEGTFLSELQRLIYACQLTRAHVDNTCSLVVKK 310
Query: 329 AVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTF 388
+VT+ + GY VIDLE L+P ++D+ LS++LA VLQF+ QR RP+RG +++L + YIR
Sbjct: 311 SVTITEYGYIVIDLEKLDPQNVDDLCLSRYLACVLQFVSQRHRPIRGRSAQLFMDYIRNT 370
Query: 389 PCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQIL 448
PCK +LT AGCYLC PGS+G K LVC S+D E+ S EQ V ++EQI
Sbjct: 371 PCKGALTVAGCYLCAFPGSKGAKILVCCSVDLMESFSAEMSYKCSYEEQPPPVPEIEQIN 430
Query: 449 EDAKSYSNHLIQDASDKLL 467
++ + + D D+LL
Sbjct: 431 QNVSKVLSKKLDD--DELL 447
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 637 YGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 674
Y +LSA +AI L+SIP +ARR+LPVL +S G +LSIP
Sbjct: 452 YLQLSATKAIEILRSIPASARRTLPVLTNSQGDILSIP 489
>gi|18404236|ref|NP_566753.1| protein raspberry 3 [Arabidopsis thaliana]
gi|14532774|gb|AAK64168.1| unknown protein [Arabidopsis thaliana]
gi|332643402|gb|AEE76923.1| protein raspberry 3 [Arabidopsis thaliana]
Length = 462
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/472 (51%), Positives = 307/472 (65%), Gaps = 48/472 (10%)
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAELFILRLSR+SGVLGLAG AF+S+IFS +KN SI LVRPLLD K+DMYK
Sbjct: 8 QAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYK 67
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
ICQ G +DWVEDPTNRS LFVRNRIR S+G+L S SFKSELQAVIS CRRTRS+V+ VC+
Sbjct: 68 ICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCT 127
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
+LI++ VTV D+GYA++DLE LNPS ++DI LSK+L VLQFI QRQRP+RG+TSKLLL+
Sbjct: 128 DLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLN 187
Query: 384 YIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTD 443
YIR PC+TSLTAAGCYL P PGS+GTK +V S+D PLPSK EL I + D
Sbjct: 188 YIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVSCSVDCPLPSKTELLNISFNETPSD---D 244
Query: 444 VEQILEDAKSYSNHLIQDASDKL-LLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIK 502
+ QI+ DAKS+S+H+ + ++ L + S+SV ++A+ N+LSESTY I LLQR+E K
Sbjct: 245 LGQIIADAKSFSDHVAPTSLFEVQFLDVASESVLSKARELNLLSESTYTTIGLLQRDETK 304
Query: 503 RFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREV 562
RF +E S +L H + + L GQ YFMNRF + W L + A
Sbjct: 305 RFLTKTEEKS-VELEHGTNIAASSDKVHLCLGQNLYFMNRFLIRWNLSDHQCNEA----- 358
Query: 563 HNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDE 622
C +C V E+RHM+E DWLYLA+LSK +
Sbjct: 359 -------------DCRNCPVSTATSMEVRHMVEPDWLYLAELSKCST------------- 392
Query: 623 KTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 674
+++ S+++A+ SLK IP AAR+SLPVLV+ G LL IP
Sbjct: 393 ------------SNHSISSSQKALRSLKLIPAAARKSLPVLVNHCGLLLCIP 432
>gi|194272234|gb|ACF37202.1| At3g24560 [Arabidopsis thaliana]
Length = 456
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 244/472 (51%), Positives = 307/472 (65%), Gaps = 48/472 (10%)
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAELFILRLSR+SGVLGLAG AF+S+IFS +KN SI LVRPLLD K+DMYK
Sbjct: 2 QAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYK 61
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
ICQ G +DWVEDPTNRS LFVRNRIR S+G+L S SFKSELQAVIS CRRTRS+V+ VC+
Sbjct: 62 ICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCT 121
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
+LI++ VTV D+GYA++DLE LNPS ++DI LSK+L VLQFI QRQRP+RG+TSKLLL+
Sbjct: 122 DLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLN 181
Query: 384 YIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTD 443
YIR PC+TSLTAAGCYL P PGS+GTK +V S+D PLPSK EL I + D
Sbjct: 182 YIRAIPCRTSLTAAGCYLSPAPGSKGTKIIVSCSVDCPLPSKTELLNISFNETPSD---D 238
Query: 444 VEQILEDAKSYSNHLIQDASDKL-LLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIK 502
+ QI+ DAKS+S+H+ + ++ L + S+SV ++A+ N+LSESTY I LLQR+E K
Sbjct: 239 LGQIIADAKSFSDHVAPTSLFEVQFLDVASESVLSKARELNLLSESTYTTIGLLQRDETK 298
Query: 503 RFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREV 562
RF +E S +L H + + L GQ YFMNRF + W L + A
Sbjct: 299 RFLTKTEEKS-VELEHGTNIAASSDKVHLCLGQNLYFMNRFLIRWNLSDHQCNEA----- 352
Query: 563 HNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDE 622
C +C V E+RHM+E DWLYLA+LSK +
Sbjct: 353 -------------DCRNCPVSTATSMEVRHMVEPDWLYLAELSKCST------------- 386
Query: 623 KTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 674
+++ S+++A+ SLK IP AAR+SLPVLV+ G LL IP
Sbjct: 387 ------------SNHSISSSQKALRSLKLIPAAARKSLPVLVNHCGLLLCIP 426
>gi|449525579|ref|XP_004169794.1| PREDICTED: tRNA(Ile)-lysidine synthase-like [Cucumis sativus]
Length = 315
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/297 (63%), Positives = 231/297 (77%), Gaps = 8/297 (2%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYL 60
MA+G I + + + L S +++++S + +P + LP R FC S +++
Sbjct: 1 MAQGLIQTGTNHSFFFLSSK--SKIAISFI---LPSFHLRVLPLPRCFCSYS---SLQQP 52
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
D+ YRE FS+RM MAGLKPHHRIALGVSGGPDSMALCVLTAGWK G + ++ +
Sbjct: 53 IDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLV 112
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLLAI VDHGLR ES++EA +V +RV+ +GIRCE+ CDW++GRPKQGHLQEAARDMRY
Sbjct: 113 DGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRY 172
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
++ QKVC+QH IGV+L+AHHADDQAELFILRLSR SGVLGLAG+ F+SQIFSS+ YS +
Sbjct: 173 QMLQKVCVQHNIGVILVAHHADDQAELFILRLSRTSGVLGLAGIPFTSQIFSSHTYSYSE 232
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
KN+ +LLVRPL+DFSKDDMYKICQ N+DWVEDPTNRS LF RNRIRMSLGDLSS
Sbjct: 233 VSKNYGVLLVRPLMDFSKDDMYKICQAANQDWVEDPTNRSSLFARNRIRMSLGDLSS 289
>gi|449467459|ref|XP_004151440.1| PREDICTED: tRNA(Ile)-lysidine synthase-like [Cucumis sativus]
Length = 315
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/297 (63%), Positives = 232/297 (78%), Gaps = 8/297 (2%)
Query: 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYL 60
MA+G I + + + L S +++++S + +P + LP R FC S +++
Sbjct: 1 MAQGLIQTGTNHSFFFLSSK--SKIAISFI---LPSFHLRVLPLPRCFCSYS---SLQQP 52
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
D+ YRE FS+RM MAGLKPHHRIALGVSGGPDSMALCVLTAGWK G + ++ +
Sbjct: 53 IDLCNYRETFSKRMDMAGLKPHHRIALGVSGGPDSMALCVLTAGWKMDGLGTSCKSSTLV 112
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLLAI VDHGLR ES++EA +V +RV+ +GIRCE+ CDW++GRPKQGHLQEAARDMRY
Sbjct: 113 DGLLAIVVDHGLRAESRDEAKVVCNRVTQLGIRCELASCDWINGRPKQGHLQEAARDMRY 172
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
++ QKVC+QH IGV+L+AHHADDQAELFILRLSR+SGVLGLAG+ F+SQIFSS+ YS +
Sbjct: 173 QMLQKVCVQHNIGVILVAHHADDQAELFILRLSRSSGVLGLAGIPFTSQIFSSHTYSYSE 232
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
KN+ +LLVRPL+DFSKDDMYKICQ N+DWVEDPTNRS LF RNRIRMSLGDLSS
Sbjct: 233 VSKNYGVLLVRPLMDFSKDDMYKICQAANQDWVEDPTNRSSLFARNRIRMSLGDLSS 289
>gi|449467715|ref|XP_004151568.1| PREDICTED: uncharacterized protein LOC101213951 [Cucumis sativus]
gi|449531852|ref|XP_004172899.1| PREDICTED: uncharacterized LOC101213951 [Cucumis sativus]
Length = 435
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/378 (52%), Positives = 259/378 (68%), Gaps = 11/378 (2%)
Query: 299 SFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKF 358
+F SEL A+ISACR+TR +++ VC +L N +T+ D GYA+I+LEILN KI+D+ L+KF
Sbjct: 37 TFNSELHAIISACRKTRLFIDQVCLSLANWTLTITDVGYAIINLEILNQFKIQDVCLAKF 96
Query: 359 LALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSI 418
+ LVLQFI QR RPVRG+T+KL+L YI+T PCKTSLTAAGCY+CP PGS+GT+ +VC S+
Sbjct: 97 VTLVLQFISQRHRPVRGNTAKLVLDYIQTGPCKTSLTAAGCYICPAPGSKGTRCIVCCSV 156
Query: 419 DGPLPSKLELFQIHSDGEQRHCVTD-VEQILEDAKSYSNHLIQDASDKLLLSMISDSVPT 477
D PLPSK+E+F S ++R V+D +EQI+ D KSY H I +ASD L S++V
Sbjct: 157 DCPLPSKIEVFHAPSYKKERRDVSDGLEQIINDGKSYLEHFIPEASDVHFLDATSETVLD 216
Query: 478 EAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVC 537
EAKR N+LSESTY+ I+ LQ +E K FK + +VT + H + V T S L+PGQ+C
Sbjct: 217 EAKRLNILSESTYRIIVSLQMQETKLFKAEPKVTPGHESKHGSQSVRTSSSGLLKPGQIC 276
Query: 538 YFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESD 597
+MNRFF+TW + EN EV++ N +C SCL+G +M E+RHM ESD
Sbjct: 277 NYMNRFFITWNIKDEN-------EVNST--FKAAGCNAFCKSCLLGCDMELEVRHMTESD 327
Query: 598 WLYLAKLSK-GLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAA 656
WLYL+KLSK + N R + GQ +E TN C + R SA+ A++ LK IPVAA
Sbjct: 328 WLYLSKLSKCSCTVKNCQNPRDTLASLEGQTMESTNRCLNSARSSAREALVLLKLIPVAA 387
Query: 657 RRSLPVLVSSHGQLLSIP 674
RRSLPVLV+ G LLSIP
Sbjct: 388 RRSLPVLVNHQGLLLSIP 405
>gi|186510383|ref|NP_974358.2| protein raspberry 3 [Arabidopsis thaliana]
gi|332643400|gb|AEE76921.1| protein raspberry 3 [Arabidopsis thaliana]
Length = 446
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 279/463 (60%), Gaps = 77/463 (16%)
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK 301
+KN SI LVRPLLD K+DMYKICQ G +DWVEDPTNRS LFVRNRIR S+G+L S SFK
Sbjct: 1 MKNQSIRLVRPLLDLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFK 60
Query: 302 SELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ-GYAVIDLEILNPSKIEDIFLSKFLA 360
SELQAVIS CRRTRS+V+ VC++LI++ VTV DQ GYA++DLE LNPS ++DI LSK+L
Sbjct: 61 SELQAVISECRRTRSFVDKVCTDLIHQTVTVTDQKGYAILDLERLNPSGVKDICLSKYLF 120
Query: 361 LVLQ----------------------------FICQRQRPVRGSTSKLLLHYIRTFPCKT 392
VLQ FI QRQRP+RG+TSKLLL+YIR PC+T
Sbjct: 121 AVLQVLHLEFFSLVKLLPFECFLDYSLLSNLQFISQRQRPIRGNTSKLLLNYIRAIPCRT 180
Query: 393 SLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQILEDAK 452
SLTAAGCYL P PGS+GTK +V S+D PLPSK EL I + D+ QI+ DAK
Sbjct: 181 SLTAAGCYLSPAPGSKGTKIIVSCSVDCPLPSKTELLNISFNETPSD---DLGQIIADAK 237
Query: 453 SYSNHLIQDASDKL-LLSMISDSVPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVT 511
S+S+H+ + ++ L + S+SV ++A+ N+LSESTY I LLQR+E KRF +E
Sbjct: 238 SFSDHVAPTSLFEVQFLDVASESVLSKARELNLLSESTYTTIGLLQRDETKRFLTKTEEK 297
Query: 512 SDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGED 571
S +L H + + L GQ YFMNRF + W L + A
Sbjct: 298 S-VELEHGTNIAASSDKVHLCLGQNLYFMNRFLIRWNLSDHQCNEA-------------- 342
Query: 572 SWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKT 631
C +C V E+RHM+E DWLYLA+LSK +
Sbjct: 343 ----DCRNCPVSTATSMEVRHMVEPDWLYLAELSKCST---------------------- 376
Query: 632 NLCADYGRLSAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 674
+++ S+++A+ SLK IP AAR+SLPVLV+ G LL IP
Sbjct: 377 ---SNHSISSSQKALRSLKLIPAAARKSLPVLVNHCGLLLCIP 416
>gi|168015333|ref|XP_001760205.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688585|gb|EDQ74961.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 569
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 184/472 (38%), Positives = 261/472 (55%), Gaps = 20/472 (4%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGGPDSMALC++ W G F E+G F + I VDHGLR ES EA V
Sbjct: 1 AIAVSGGPDSMALCLVAKEWWKG-FR---ESGVFAERPTGIVVDHGLRPESAAEALQVQR 56
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
V D+G C +++CDWL+GRP GHLQEAAR+ RY L ++ C +H IG LL HHADDQA
Sbjct: 57 WVLDLGFECHVLKCDWLNGRPDSGHLQEAARNARYSLMEQTCWKHGIGTLLTGHHADDQA 116
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
ELF++RL+R+SG++GLAGMA S FS S +LLVRPLL FSK D+Y +C
Sbjct: 117 ELFMMRLARSSGIIGLAGMASRSYFFSRRPVS----QDQTGLLLVRPLLQFSKQDLYTVC 172
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNL 325
+ ++W+EDPTN + F RNRIR L D + ++ +I+ACR+TR+ ++ L
Sbjct: 173 KKAGQEWIEDPTNFNHKFARNRIRQVLADPLYDDARRQIHPLIAACRQTRAMLDRERDGL 232
Query: 326 INEAVTV-MDQGYAVIDLEILNPSKIEDIFLSKFLALVL----QFICQRQRPVRGSTSKL 380
+ + VT+ D GY ID+++L S I D L + + VL QF+ QR++P RG K+
Sbjct: 233 LAKIVTISKDFGYISIDVDLLASSNISDAVLGRVVVAVLQARSQFVAQREKPPRGKALKI 292
Query: 381 LLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLP---SKLELFQIHSDGEQ 437
+ +R + T AGC++ P PGS+G+K +VC S + P P S L ++ +S +
Sbjct: 293 FMDKLRQPSFNEAFTLAGCHVSPVPGSKGSKVMVCLSPESPTPSLGSDLSPWEPNSVLAR 352
Query: 438 RHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNILLLQ 497
+ Q+L K + I D S SV + ++ ++SE + L+
Sbjct: 353 SNLNPRGVQLLNSEKVCYDEGIPPILDA---SKGGSSVLEQGRKLGLVSEEVATLLNSLR 409
Query: 498 REEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQP-GQVCYFMNRFFVTWK 548
E + EV + G + P G CYFMNRF V+W+
Sbjct: 410 TEIAETMSRTIEVCKKGDKRLELSPYGLDIRKQMLPFGHTCYFMNRFLVSWE 461
>gi|413936437|gb|AFW70988.1| hypothetical protein ZEAMMB73_303298 [Zea mays]
Length = 290
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/248 (59%), Positives = 180/248 (72%), Gaps = 10/248 (4%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE-----AGEFI 120
Y +F+RRMA+AG+ PHHRIA+GVSGGPDSMALCVL WK + G+ A F+
Sbjct: 39 YHASFARRMALAGIHPHHRIAVGVSGGPDSMALCVLATAWKKAAGRKAGDEEDPVASAFV 98
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
DGLL + VDHGLR ES +EA +V RV MG+ CEI C+W G PKQG +QEAAR++RY
Sbjct: 99 DGLLGVVVDHGLRPESADEARLVRDRVRGMGVECEIANCEWPYGPPKQGKVQEAAREVRY 158
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
+ +CI+ QIG+LLIAHH+DDQAELF+LRLSR SGVLGLAG AF SQ+F+S +
Sbjct: 159 QKLLDICIKQQIGILLIAHHSDDQAELFVLRLSRQSGVLGLAGTAFVSQLFASNVKYDGE 218
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 300
+ + ILLVRP+L+FSKDDMYKICQG N+ WVEDPTN S + RNRIR SL LS
Sbjct: 219 RFRRYGILLVRPMLEFSKDDMYKICQGSNQPWVEDPTNTSMKYARNRIRASLRKLS---- 274
Query: 301 KSELQAVI 308
+E QAV+
Sbjct: 275 -TEGQAVL 281
>gi|302791165|ref|XP_002977349.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii]
gi|300154719|gb|EFJ21353.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii]
Length = 1167
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 209/620 (33%), Positives = 299/620 (48%), Gaps = 97/620 (15%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
D F ++M +AG+ R+A+ VSGG DSMALC+L W E+ +
Sbjct: 26 DFKNASAVFHKKMEVAGVSCRDRVAIAVSGGADSMALCLLALEWT--------ESKSLVF 77
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
GL TVDHG R ES EE V + +G+ CEI++C W G P GHLQE+AR RY
Sbjct: 78 GL---TVDHGFRRESAEEVVQVREWLRTLGMECEILKCSWQGGFPSPGHLQESARKARYE 134
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
L Q+ C ++ GVLL AHHADDQAELF LRLSR SG GLA MA +S++F
Sbjct: 135 LLQEACQRNGAGVLLTAHHADDQAELFALRLSRCSGDNGLACMALASELFPIMP----SI 190
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK 301
++ +LLVRPLLD K D+Y +C ++ W+EDPTN ++ RN+IR L LS S +
Sbjct: 191 IEASRLLLVRPLLDLQKKDLYNVCHVADQSWIEDPTNCKTIYARNKIRKELVSLSD-SMR 249
Query: 302 SELQAVISACRRTRSYVEHVCSNLINEAVTV-MDQGYAVIDLEILNPSKIEDIFLSKFLA 360
SE+Q +I+ R+ RS + L+ V + +D GYAV+D E L + L LA
Sbjct: 250 SEVQDLIATYRKKRSEIHVQTKMLMTTFVHIDLDYGYAVVDAEGLLAETNDTTVLETLLA 309
Query: 361 LVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDG 420
VL+F+ QR +P +G+ + +I + LT AGC LC PG++ +K LV S D
Sbjct: 310 SVLRFVSQRPKPAKGTAVRGARAWITKRGTEGRLTVAGCSLCLQPGTQTSKVLVTYSPDS 369
Query: 421 PLPSKLELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAK 480
P P + Q + T E I + Y+N +I DA +ISD+ A
Sbjct: 370 PRPGSIGSRQQNEPASS----TKKESIA--CRKYAN-VIHDARQA---KIISDAT---AS 416
Query: 481 RFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFM 540
+L+E ++L REE++ DSEV S Q +V L P + Y+M
Sbjct: 417 FLCLLAEEMAADMLPKAREEVQE---DSEVAS-QQPDESV----------LFPNENTYYM 462
Query: 541 NRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVG-----DEMVAELRHMIE 595
R+ ++W ++ S C C G A++RH+
Sbjct: 463 KRYLISWWQRSDDRS---------------------CKGCFNGTCSLRTAKFAKIRHLNR 501
Query: 596 SDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPVA 655
+D L + + + L+ G L R LKS+P
Sbjct: 502 NDLLEVRQ--RALNDGTL-------------------------RTDIHDGWRKLKSLPEY 534
Query: 656 ARRSLPVLVSSHGQLLSIPV 675
RR LPVL++ +L ++P+
Sbjct: 535 VRRGLPVLITKDNELFAVPI 554
>gi|195998279|ref|XP_002109008.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens]
gi|190589784|gb|EDV29806.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens]
Length = 462
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 124/248 (50%), Gaps = 29/248 (11%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
M K+ E R GL P +AL VSGG DS++LCVL A ++
Sbjct: 1 MQKFIEVVER----YGLTPSTPVALAVSGGVDSISLCVL--------------ARQYFQK 42
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L AITVDH LR ES +EA V+ + + I +IV C+W + +QE AR RYRL
Sbjct: 43 LFAITVDHRLRAESSQEAQNVNEILDKLNIPHKIVSCNW-NQEVNFRKVQELARLKRYRL 101
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ C I LL HH +DQ E FI RLS SG+ GL+ M S + +
Sbjct: 102 LGEECQNQNIQYLLTGHHLNDQIETFIFRLSCKSGIDGLSCMKLSQNLRLHFP------- 154
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
I L+RPLL F K + ++C W+EDP+N S ++ RN+IR L L + S
Sbjct: 155 ---PITLIRPLLSFQKTQLQEVCHQNKVIWIEDPSNMSLMYKRNQIRQGLAALQNSSKNI 211
Query: 303 ELQAVISA 310
L ++++
Sbjct: 212 SLTTLVAS 219
>gi|440798300|gb|ELR19368.1| tRNA(Ile)lysidine synthetase [Acanthamoeba castellanii str. Neff]
Length = 578
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 136/276 (49%), Gaps = 64/276 (23%)
Query: 85 IALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
IA+ VSGGPDSMALC+LT W K G +LA+TVDHGLR ES EEA
Sbjct: 14 IAIAVSGGPDSMALCLLTHHWAKKRGIK-----------VLALTVDHGLRPESGEEAK-- 60
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
GIR EI+ W D + GH+QEAAR RY L + C I LL AH +D
Sbjct: 61 ------RGIRHEILHRPW-DKPAQPGHIQEAARKHRYMLLYEKCRSEGIHNLLTAHQLED 113
Query: 204 QAELFILRLSRNSGVLGLAGM-----------------AFSSQIFSSYAYSCHDDLKNHS 246
Q E FI+RL+ SGV GLAG+ A ++ + A L N +
Sbjct: 114 QVETFIMRLAHFSGVDGLAGIQKRHAQFFPPVPPGSGSAKAAMTSTRLAPPLFPPLSNQT 173
Query: 247 I------------LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG- 293
+ +VRPLL+ SKD + C ++ V+DPTN++ F RNRIR +L
Sbjct: 174 LNTPSSDSYPSPLYIVRPLLEVSKDRLMATCAHFGQEAVDDPTNQNMTFHRNRIRQALPL 233
Query: 294 --------DLSSCSF-----KSELQAVISACRRTRS 316
DLS + ++E+QA ++A RT S
Sbjct: 234 LWETIGKEDLSRTIYHFQKARNEMQAEVNAIMRTHS 269
>gi|406990114|gb|EKE09798.1| tRNA(Ile)-lysidine synthase [uncultured bacterium]
Length = 421
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 38/334 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGGPDS+AL LT + Q + A+TV+HGLR S++EA V
Sbjct: 19 VAVAVSGGPDSLALLHLTHAYALKKKKQ----------IFALTVNHGLRHNSEKEALFVK 68
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
GI I+ +W++ +P +QE AR+ RY L K C + I LL+ HH DQ
Sbjct: 69 KIAEGKGIPHVIL--NWIEDKP-FSRIQEKAREARYHLLLKWCKDNAIPTLLLGHHQQDQ 125
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E F LRL SG+ GL GM + ++ IL+VRP L FSK+ +
Sbjct: 126 EETFWLRLFSGSGLDGLTGMKYR--------------IEREGILVVRPFLFFSKERLKAT 171
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSN 324
+ W+EDP+N++ + R R R S + S K+ L V++ + ++++
Sbjct: 172 LIAEKQGWIEDPSNKNTTYFRGRFR-SFAEKEGLS-KARLLNVMTKLQEDADFIQNSLKE 229
Query: 325 LINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHY 384
+++ V + ++GY I E K+ + ++ ++++ + P R + +L
Sbjct: 230 ALHQTVHLFEEGYFSIQNEAFE--KLHPALAKRMISFLVRWFSKDSYPPRSTQVGEILKK 287
Query: 385 IRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSI 418
++T + T+ G Y P + T+ LV +
Sbjct: 288 LKT---TKAFTSGGAYWIP----QATEILVLREV 314
>gi|108755189|emb|CAK32581.1| putative PP-loop superfamily ATPase [uncultured organism]
Length = 460
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 168/355 (47%), Gaps = 35/355 (9%)
Query: 68 EAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+AF+ MA G + + R+A+ VSGG DSMALC+L W AG A+
Sbjct: 21 DAFAGMMAAVGPFEANSRLAVAVSGGGDSMALCLLAQRW----------AGRRRGSTTAL 70
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V + G+ ++ +W +P G +Q AAR RY L
Sbjct: 71 TVDHGLRPEAADEARQVGRWLKARGVAHHVL--EWRGPKPVSG-IQAAARAARYGLMTAW 127
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + LL+AHH +DQAE F+LRL R SG+ GL+ MA ++ +
Sbjct: 128 AREAGVLHLLVAHHQEDQAETFLLRLERGSGIDGLSAMAAI--------------VETPA 173
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA 306
+ LVRPLL + + + ++W+EDP+NR F R RIR +L L+ + A
Sbjct: 174 VRLVRPLLGVPRARLRATARAFGQEWLEDPSNRDAAFARTRIRAALPALARSGMSPAVLA 233
Query: 307 -VISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQF 365
+ R +E+ S L+ TV GYA +D I+ + ED+ + LA +L
Sbjct: 234 EKANRVGHVRIALENAASALLAVCCTVHPAGYARLDQSIVA-AAPEDVSF-RALARILMC 291
Query: 366 ICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDG 420
+ R+ R + L + + T GC + + G + LVC + G
Sbjct: 292 VGGREYAPRREKLERLYAVVVGGKLGKARTLGGCRIL----AEGYRILVCREMRG 342
>gi|325179733|emb|CCA14136.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 806
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 179/380 (47%), Gaps = 56/380 (14%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R + G P +A+ +SGG DS+ L +L + E + LLAITVDH L
Sbjct: 114 RHKLVGQYP---LAVALSGGADSLTLTLLLDEYLR-------ECEQKAASLLAITVDHQL 163
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDW--------LDGRPKQGHLQEAARDMRYRLFQ 184
R ES+EEA V + GI I DW +DG+PK+ +Q AR RY +
Sbjct: 164 RAESREEAEYVHKICEERGIAHVIASNDWSAFDSAQLVDGKPKKSQIQVQARKYRYSSLE 223
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
C + + L + H DDQ E + RL+R SGV GLAGM ++ F ++++
Sbjct: 224 HKCRKVSVKYLFVGHTLDDQEETILYRLARGSGVNGLAGMDPITKWF------WNEEMGE 277
Query: 245 HSILLVRPLLDFSKDDMYKIC-QGGNRDWVEDPTNRSPLFVRNRIR----MSLGDLSSCS 299
H I L+RPLL K + + C Q ++DW+EDP+N S F R RIR M GD +
Sbjct: 278 H-IYLIRPLLSVPKSRLQQTCMQRFHQDWIEDPSNHSDTFDRVRIRKVMAMIRGDSGEGA 336
Query: 300 FKS--ELQAVISACRRTRSYVEHVCSNLINEAVT--VMDQGYAVIDLEILNPSKIEDIFL 355
F S LQ + + ++ +E N+A+ + + + + L++ E++ +
Sbjct: 337 FDSLLPLQQIATEAKKNFRKLE-------NKALEKHITEWSPSRVTLDVAFQDGYEEL-I 388
Query: 356 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCY---------LCPTPG 406
+ L +L ++ +++ P R S+ +LH + C +T GC LC P
Sbjct: 389 YRVLIRILCYVGKKEHPPRHSSVSKVLHDLDQLTCGKQITIHGCVVKKVEKGRLLCFQPE 448
Query: 407 SRGTKALVCSSIDGPLPSKL 426
R T+ S D LP K+
Sbjct: 449 HRRTE-----SFDPFLPCKM 463
>gi|407771730|ref|ZP_11119081.1| ATPase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407285272|gb|EKF10777.1| ATPase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 490
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 140/273 (51%), Gaps = 34/273 (12%)
Query: 70 FSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
FSR M + G + +IA+ VSGG DSMAL +L W ++ GE L AITV
Sbjct: 25 FSRLMNVFGPFEDRPKIAVAVSGGADSMALALLAHEWCG---SKGGE-------LTAITV 74
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR E+ EEA V ++ GI I+ C W +P+ G +QEAAR RY L +
Sbjct: 75 DHGLRAEAAEEAIRVGEQLRKHGIDHRIL-C-WDGAKPQSG-IQEAARKARYDLLDRALG 131
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ I LL+AHH DDQ E ++R R SGV+G AGMA L+N +L
Sbjct: 132 EMDILHLLVAHHRDDQHETLVMRQQRESGVIGRAGMAARRY------------LRNARVL 179
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 308
RPLL +K D+ + +DW+EDP+NR+ F R RIR + + +
Sbjct: 180 --RPLLPVAKVDLIATLRTRQQDWIEDPSNRNVRFERVRIR------HNPMMDGPKKETV 231
Query: 309 SACRRTRSYVEHVCSNLINEAVTVMDQGYAVID 341
+ TR E+ ++L+ AV + + G A ID
Sbjct: 232 QSAADTRQTAEYRIADLLASAVQIANCGIARID 264
>gi|307110239|gb|EFN58475.1| hypothetical protein CHLNCDRAFT_140495 [Chlorella variabilis]
Length = 556
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 20/247 (8%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNG----E 115
+T + +Y A GL+ R+A+ +SGGPDS+AL +T W+ GF +N +
Sbjct: 1 MTTLARYVAALRN----CGLRSSDRVAVALSGGPDSLALASMTVWWQ--GFVRNQVLRRD 54
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA 175
LA+ VDH LR ES EEA+ V+ + +G++ ++ W G QG AA
Sbjct: 55 RLRSQQTPLALIVDHKLRPESTEEAHAVAAQAEGLGMQTRVLALGWPPGEVAQGDRMVAA 114
Query: 176 RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA 235
R+ RY + C + LL+AHHADDQAE F+LRL SGV+GLA M ++ + +
Sbjct: 115 REARYAALLRACGEMGRTHLLLAHHADDQAETFLLRLLHASGVVGLACMPAVAEKRTEFG 174
Query: 236 YSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
I +VRPLL F K ++ CQ ++ DPTN + RNRIR L +
Sbjct: 175 ----------RIKVVRPLLGFHKAELEAYCQRSRLPYIVDPTNSELSYHRNRIRHVLRQM 224
Query: 296 SSCSFKS 302
S + +S
Sbjct: 225 PSLADRS 231
>gi|344924498|ref|ZP_08777959.1| tRNA(Ile)-lysidine synthetase [Candidatus Odyssella
thessalonicensis L13]
Length = 368
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 115/228 (50%), Gaps = 28/228 (12%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
M P +A+ VSGGPDSM LC L W+ G +Q L A+ VDHGLR E
Sbjct: 1 MGPFAPGCHLAVAVSGGPDSMVLCHLLRCWQLQGQDQK---------LTALIVDHGLRPE 51
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
S EEA I R+ +GI I++ W D +P +QE AR RY L + C QH I L
Sbjct: 52 SAEEAQITQQRLQKLGIESVILK--WQDPKPT-TRIQERARQARYHLLEAWCQQHGIIHL 108
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L AHHADDQ E + RL +NSG GL G + + F L+RPLL
Sbjct: 109 LTAHHADDQWETVVSRLQKNSGSSGLRGILPIRYRPFGR---------------LLRPLL 153
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
+F+K ++Y D+V DP+N + ++R R+R L SF +
Sbjct: 154 NFTKAEIYAYLVQVGGDYVVDPSNANLKYLRVRLRQDRPVLEQSSFPA 201
>gi|91762265|ref|ZP_01264230.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002]
gi|91718067|gb|EAS84717.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002]
Length = 351
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 178/356 (50%), Gaps = 42/356 (11%)
Query: 52 SHAHAVEYLTD--MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGG 109
+H + +L D ++K FS + L +A+ VSGGPDS+AL L +
Sbjct: 12 THKQILSFLKDRKISKVYSEFS-----SSLNSEENLAVAVSGGPDSLALAYLAKCYSI-- 64
Query: 110 FNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG 169
+N +F VDH LR ES +EA +V + +GI C+++ W +P +
Sbjct: 65 --KNKIKVKFF------LVDHRLRNESTKEATLVKKILQKIGITCKVL--IWKGKKPSR- 113
Query: 170 HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229
++Q AR+ RY L K C ++ I LL+ HH++D E F++R+ R SG+ GL ++F+
Sbjct: 114 NIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDLVENFLIRVVRGSGLNGL--VSFNKS 171
Query: 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ K+ + ++RPLL+ K+D+ I + + +++DP+N + ++ R RIR
Sbjct: 172 V----------KYKDEDLNILRPLLNLKKNDLINISKIVFKFFIKDPSNINEIYKRTRIR 221
Query: 290 MSLGDLSSCSFK-SELQAVISACRRTRSYVE-HVCSNLINEAVTVMDQGYAVIDLEILNP 347
L L +L+ I R + ++ +V NL + + + + ++ +
Sbjct: 222 TLLESLEKEGLDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIKTKDTYILSHNFFDQ 281
Query: 348 SKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI--RTFPCKTSLTAAGCYL 401
S E +F S L V+Q I ++ PVRG + L++ I +TF + +T GC++
Sbjct: 282 SH-EVVFRS--LTFVIQKIGKKYYPVRGKSINELINRIILKTF---SKITLGGCFV 331
>gi|304570552|ref|YP_266024.2| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062]
Length = 346
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 179/356 (50%), Gaps = 42/356 (11%)
Query: 52 SHAHAVEYLTD--MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGG 109
+H + +L D ++K FS + L +A+ VSGGPDS+AL L +
Sbjct: 7 THKQILSFLKDRKISKVYSEFS-----SSLNSEENLAVAVSGGPDSLALAYLAKCYSI-- 59
Query: 110 FNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG 169
+N +F VDH LR ES +EA +V + +GI C+++ W +P +
Sbjct: 60 --KNKIKVKFF------LVDHRLRNESTKEATLVKKILQKIGITCKVL--IWKGKKPSR- 108
Query: 170 HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229
++Q AR+ RY L K C ++ I LL+ HH++D E F++R+ R SG+ GL ++F+
Sbjct: 109 NIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDLVENFLIRVVRGSGLNGL--VSFNKS 166
Query: 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ K+ + ++RPLL+ K+D+ I + + +++DP+N + ++ R RIR
Sbjct: 167 V----------KYKDEDLNILRPLLNLEKNDLINISKIVFKFFIKDPSNINEIYKRTRIR 216
Query: 290 MSLGDLSSCSFK-SELQAVISACRRTRSYVE-HVCSNLINEAVTVMDQGYAVIDLEILNP 347
L L+ +L+ I R + ++ +V NL + + + + ++ +
Sbjct: 217 TLLEFLAKEGLDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIKTKDTYILSHNFFDQ 276
Query: 348 SKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI--RTFPCKTSLTAAGCYL 401
S E +F S L V+Q I ++ PVRG + L++ I +TF + +T GC++
Sbjct: 277 SH-EVVFRS--LTFVIQKIGKKYYPVRGKSINELINRIILKTF---SKITLGGCFV 326
>gi|414175494|ref|ZP_11429898.1| tRNA(Ile)-lysidine synthetase [Afipia broomeae ATCC 49717]
gi|410889323|gb|EKS37126.1| tRNA(Ile)-lysidine synthetase [Afipia broomeae ATCC 49717]
Length = 347
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL L A W+ A + LLAITVDHGLR+E+ EA V
Sbjct: 27 VVLAVSGGPDSMALMWLAARWR--------RALKKGPRLLAITVDHGLRKEAAREARDVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+GI +R W +PK G L AARD RYRL + H + AH DDQ
Sbjct: 79 QLARALGIEHRTLR--WRGEKPKTG-LPSAARDARYRLLLRAASSHGASHVFTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE I+RLSR SG+ GLA MA S ++L RP LD K +
Sbjct: 136 AETVIMRLSRGSGIAGLAAMARQSD--------------RGGVVLARPFLDVPKSRLIAT 181
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
+ +DPTN P F R R+R
Sbjct: 182 LAKAGIAFADDPTNHDPRFTRPRLR 206
>gi|92118967|ref|YP_578696.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter
hamburgensis X14]
gi|91801861|gb|ABE64236.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter
hamburgensis X14]
Length = 345
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
++ A K H + LGVSGGPDS AL L A W+ A L+A+TVDHGL
Sbjct: 15 KLLFADWKAAHALVLGVSGGPDSTALMWLAARWR--------RAMTRGPDLIAVTVDHGL 66
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R S EA V H + +G+R VR W +PK G L AARD RYRL K +
Sbjct: 67 RPGSAREARDVKHLATSLGMRHRTVR--WSGAKPKSG-LPAAARDARYRLLAKTARANGA 123
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
+ AH DDQAE ++R+SR SG+ GL+ MA + +L RP
Sbjct: 124 LHVFTAHTRDDQAETVLMRISRGSGITGLSAMARETM--------------RDGFILARP 169
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LL SK + + + EDPTNR F R R+R
Sbjct: 170 LLHVSKSRLIATLEKAGIAYAEDPTNRDVSFTRPRLR 206
>gi|118588322|ref|ZP_01545731.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Stappia aggregata IAM 12614]
gi|118439028|gb|EAV45660.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Stappia aggregata IAM 12614]
Length = 461
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 125/259 (48%), Gaps = 26/259 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+AL VSGG DS+ L VL W K G+ E + VDH LR ES +EA V
Sbjct: 36 LALAVSGGSDSLCLLVLFDEWRKRTGWQGAAEV---------LCVDHQLRPESGQEAEFV 86
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ G+ C ++R W +P ++QE AR RYRL + L++ HH DD
Sbjct: 87 AMNARACGLDCTVLR--WSGDKPS-ANVQEEARLARYRLMAGRMRDTEAEALVLGHHLDD 143
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE F+ RL+R SGV GL+GMA + + L+RPLL SK D+
Sbjct: 144 QAETFLDRLTRGSGVSGLSGMA------------ADEGCGPEGLRLLRPLLSVSKSDLIA 191
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVC 322
+ R W DP+NR+P + R+R+R+ L L+ +E A +A RR R +E
Sbjct: 192 ALEQRGRPWCTDPSNRNPKYKRSRLRVILSLLAEEGLSAERLAQTAANIRRAREALELTV 251
Query: 323 SNLINEAVTVMDQGYAVID 341
+L VT G +D
Sbjct: 252 EDLAARLVTEHPAGPVRLD 270
>gi|126737230|ref|ZP_01752965.1| PP-loop family protein [Roseobacter sp. SK209-2-6]
gi|126721815|gb|EBA18518.1| PP-loop family protein [Roseobacter sp. SK209-2-6]
Length = 418
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 141/299 (47%), Gaps = 32/299 (10%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G P R+ + VSGG DS+AL L F+ GE ++ +LA TVDHGLR+ES
Sbjct: 17 GASPPPRVGVAVSGGGDSLALLHLL----KSCFD-----GEPVE-ILAATVDHGLRKESA 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EEA + +G+R E++ W DG + G+LQE AR RY L ++ I +L +
Sbjct: 67 EEAKWTAEVARGLGLRHEVL--IWEDGPEETGNLQEQARHARYSLLTNWARRNGIPILTL 124
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
H ADDQAE ++RLSR GV GLAG+ + + + L+RPLL+
Sbjct: 125 GHTADDQAETVLMRLSRAGGVNGLAGIPQRRTL--------------NGVTLLRPLLEVR 170
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK-SELQAVISACRRTRS 316
++ + + DW++DP+N F R R R +L +L+ L V + R
Sbjct: 171 REALRSYLRDEGHDWIDDPSNDDSRFERVRFRKALENLAELGITVPALATVAQNMSKARK 230
Query: 317 YVE-HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVR 374
++ HV L + + G V DL + D + L +Q+I P R
Sbjct: 231 ALDWHVF--LAARDIARFEAGAMVFDLRKFR--TLPDEIAHRLLQQAIQWISGNPYPAR 285
>gi|146338275|ref|YP_001203323.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 278]
gi|146191081|emb|CAL75086.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 278]
Length = 367
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 115/227 (50%), Gaps = 29/227 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEANI 142
+ L VSGGPDSMAL L A W+ DG L+AITVDHGLR E++ EA +
Sbjct: 36 LVLAVSGGPDSMALLWLAARWRQA----------LADGPRLVAITVDHGLRPEARREAAM 85
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V + + ++R W + +P G + EAAR RYRL + Q +L AH D
Sbjct: 86 VKRFARQLEVSHRMLR--WTEPKPTTG-IPEAARLARYRLLARAARQAGASHVLTAHTRD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++RL R SG++GLA MA S D L LL RPLL+ SK +
Sbjct: 143 DQAETVLMRLLRGSGIVGLAAMA---------PVSARDGL-----LLARPLLEISKARLV 188
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
+ ++ +DPTN P + R R+R + L++ S A ++
Sbjct: 189 ATLRSAGIEFADDPTNHDPAYTRPRLRALMPALAAEGGDSRTLATLA 235
>gi|348688733|gb|EGZ28547.1| hypothetical protein PHYSODRAFT_309379 [Phytophthora sojae]
Length = 737
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 39/353 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DSMAL +L + + LLA+TVDH LR ES EA V+
Sbjct: 36 IAVAVSGGADSMALMLL--------LREYLQKNRIKTSLLAVTVDHQLRAESNREALEVA 87
Query: 145 HRVSDMGIRCEIVR-CDWLD-------------GRPKQGHLQEAARDMRYRLFQKVCIQH 190
+ G + + C W +P++ ++E AR RY L ++VC ++
Sbjct: 88 KICAKRGGITHVTKVCHWYSEDEAGGLKDPSRPAKPRESKMEEQARQYRYDLLKQVCEEY 147
Query: 191 QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS--SYAYSCHDDLKNHSIL 248
++ L +AH+ DQ E + RL R SGV GLAG+A S A + D ++
Sbjct: 148 RVRCLFVAHNLGDQLETTLFRLGRASGVNGLAGIANQVPFCSLDESAGNTGDSKPAEAVT 207
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS------SCSFKS 302
LVRPLL +KD + C+ + W+ DP+N ++ R RIR L + + S
Sbjct: 208 LVRPLLSATKDQLIATCERFQQTWIHDPSNDDLVYDRVRIRQELQRVEREHGPDAVDLFS 267
Query: 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALV 362
+ Q ++ + +E + + + V+ + + + D L + L+++
Sbjct: 268 KFQQTAEKAKKEFARIERA---MFRKYTVAWEPDSVVVRMAVFRDPAMFDELLYRLLSII 324
Query: 363 LQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCY------LCPTPGSRG 409
+ + + P R ++ L I+ +T GC + P PG G
Sbjct: 325 ILHVGDKDAPPRLASVARLAADIQRLETGKQITLGGCRKSAPTEVAPVPGFFG 377
>gi|149236285|ref|XP_001524020.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452396|gb|EDK46652.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 523
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 112/212 (52%), Gaps = 10/212 (4%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ +G+SGGPDSM L L N + + AIT+DH R SK EA +
Sbjct: 25 KVGIGLSGGPDSMLLSWLLKTTNEQLMNNRLK-------IHAITIDHSFRAGSKVEAQKL 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ +++ GI+ I D+ D PK + +E AR R+ +C + +I L + HH D
Sbjct: 78 TPTMNNWGIKHSIKSLDYGDADPKLFTNFEEIARIKRFEALNDLCCEQRIPFLFLGHHKD 137
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E F+ RL NS + GLAG S + SS + K+ + LVRPLLDF KDD+
Sbjct: 138 DQVETFVQRLQGNSSIYGLAGTRQVSPLPSSRDLPPLET-KDGQVFLVRPLLDFYKDDIV 196
Query: 263 KICQGGNRDWVEDPTNRSP-LFVRNRIRMSLG 293
K C+ N +V DPTN++P L RN +R G
Sbjct: 197 KTCELHNIPYVIDPTNKNPKLTRRNFLRQVFG 228
>gi|88606751|ref|YP_505718.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ]
gi|88597814|gb|ABD43284.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ]
Length = 447
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 158/344 (45%), Gaps = 29/344 (8%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
M + P+ + A+ VSGG DSM L L A + ++ + +TV+HG R E
Sbjct: 1 MRDIVPNAQYAVAVSGGVDSMTLMRLVALFH--------KSSASVGSPTILTVNHGFRPE 52
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
++ E + V + + +G+ C ++ W + P + Q AR++RY+L + C H + VL
Sbjct: 53 ARNEVSFVHKQATMLGLECHMLH--WEN--PIRKKSQVVARNIRYQLLLQWCSAHNVKVL 108
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
L AH +DQAE ++RL R SG+ GLAG+ S I + ++RPLLD
Sbjct: 109 LTAHTKNDQAETVLIRLERGSGIDGLAGIRERSVI--------------GDVTIIRPLLD 154
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCS-FKSELQAVISACRRT 314
F++ ++ + + W+EDP+N P + R R + + S L + +R+
Sbjct: 155 FTRREIQEYAIQHQQPWIEDPSNSDPKYRRTFYRNFINNCKHPEILISRLSSTALHMQRS 214
Query: 315 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVR 374
S + H N ++ + GY VI ++ ++D S+ L++ I + R
Sbjct: 215 LSCILHYVQNALDSCLEFTPFGYVVIKHDVFR--NLQDEIASRLFLLLIMTIGNKPLKPR 272
Query: 375 GSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSI 418
S L +R+ S T GC + T S A SSI
Sbjct: 273 FSKFSSALSKVRSTAGFASFTLHGCMILKTCDSNIIVAREVSSI 316
>gi|338972038|ref|ZP_08627417.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234932|gb|EGP10043.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobiaceae bacterium SG-6C]
Length = 357
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 109/221 (49%), Gaps = 25/221 (11%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
+G K I L VSGGPDS+AL L A W+ Q L+A+TVDHGLR+E+
Sbjct: 27 SGWKASPAIVLAVSGGPDSVALMWLAARWRKT-LKQGPR-------LVAVTVDHGLRKEA 78
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA V H + + I ++ W +PK G L AARD RYRL + +L
Sbjct: 79 AREARDVKHLAAALDIEHRTMK--WRGDKPKTG-LPSAARDARYRLLARAAKSCGASHIL 135
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AH DDQAE I+RLSR SG+ GLA MA + ++LVRP LD
Sbjct: 136 TAHTQDDQAETVIMRLSRGSGIAGLAAMARQTD--------------RGDVVLVRPFLDV 181
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
K + + + +DPTN P F R R+R + L++
Sbjct: 182 PKARLVATLEKAGIAFADDPTNHDPRFTRPRLRALMPALAA 222
>gi|374291392|ref|YP_005038427.1| tRNA(Ile)-lysidine synthase [Azospirillum lipoferum 4B]
gi|357423331|emb|CBS86181.1| tRNA(Ile)-lysidine synthase [Azospirillum lipoferum 4B]
Length = 453
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 141/274 (51%), Gaps = 29/274 (10%)
Query: 70 FSRRMA-MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F+R MA + G +P +A+G+SGG DS+AL +L W E LLA+TV
Sbjct: 19 FARAMAALDGFEPAPAVAVGLSGGGDSLALVLLLRHWVA----------ERGGNLLALTV 68
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR ES +EA +V ++ +GI I+R W +P G A R+RL C+
Sbjct: 69 DHGLRAESADEAAVVGTAMARIGIPHRILR--WAGDKPVSGLQAAARA-ARHRLLADACV 125
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ I L +AHH DDQAE +LRL+R SG GLAGMA + ++
Sbjct: 126 EAGILHLALAHHRDDQAETVLLRLARGSGTDGLAGMAAVR--------------ADGAVR 171
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAV 307
++RPLL FS D + C+ +WVEDP+N +P F R R+R + L + L V
Sbjct: 172 VIRPLLGFSHDRLLATCRAAGLEWVEDPSNHNPRFARARLRAARDLLGGEGLDGDRLCEV 231
Query: 308 ISACRRTRSYVEHVCSNLINEAVTVMDQGYAVID 341
R R+ +E ++L+ +A T+ +G+ D
Sbjct: 232 ARRAGRARAALEQATADLLAQAATIHPEGWVTFD 265
>gi|297721059|ref|NP_001172892.1| Os02g0266500 [Oryza sativa Japonica Group]
gi|255670789|dbj|BAH91621.1| Os02g0266500, partial [Oryza sativa Japonica Group]
Length = 106
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 73/94 (77%)
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
++AELF+LRLSRNSGVLGLAG AF SQ+F+ D+ + ++LVRP+L+FSKDDMY
Sbjct: 1 NEAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDNFSRYGVILVRPMLEFSKDDMY 60
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 296
KICQG N WVEDPTN S L+VRNRIR SL LS
Sbjct: 61 KICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLS 94
>gi|299134181|ref|ZP_07027374.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2]
gi|298590928|gb|EFI51130.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2]
Length = 347
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 111/225 (49%), Gaps = 25/225 (11%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R AG K + L VSGGPDS+AL L A W+ +NG LLA+TVDHGL
Sbjct: 17 RHLFAGWKRIPALVLAVSGGPDSVALLWLAARWRKS--LKNGP------DLLAVTVDHGL 68
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R + EA V S +GI I+ W +PK G + AARD RY L +
Sbjct: 69 RAAAAHEARNVKRLASSLGITHRIL--SWRGPKPKTG-VPRAARDARYELLARAARSASA 125
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
++ AH DDQAE ++RLSR SG+ GLAGMA ++ H + L+RP
Sbjct: 126 VAIVTAHTQDDQAETVLMRLSRGSGITGLAGMAMQTE--------------RHGVGLLRP 171
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L+ K + + +DPTN P + R+R+R + L+S
Sbjct: 172 FLEIPKARLVATLDRAKVVYADDPTNHDPAYTRSRLRALMPVLAS 216
>gi|114771183|ref|ZP_01448603.1| PP-loop family protein [Rhodobacterales bacterium HTCC2255]
gi|114548108|gb|EAU50995.1| PP-loop family protein [Rhodobacterales bacterium HTCC2255]
Length = 423
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 166/377 (44%), Gaps = 61/377 (16%)
Query: 58 EYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAG 117
+ L + T+ AF +++ I L VSGG DS+AL LT W A
Sbjct: 8 DILNNFTEKMNAFEIQIS------GDNIGLSVSGGGDSIALLYLTKEW----------AC 51
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
+ + TVDHGLR+ES EA V +GI C I+ +W D K G+LQ+AAR
Sbjct: 52 KNDKKIFVATVDHGLRKESLNEAQTVKDICRSLGIECTIL--NWTDW-DKSGNLQDAARS 108
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
R RL + + H ADDQAE F+LRL+R SGV GL+GMA S
Sbjct: 109 ARNRLIGNWANSLGLDAVATGHTADDQAETFLLRLARGSGVDGLSGMASS---------- 158
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
+ +L RPLL+F + ++ W +DP+N + F R ++R +
Sbjct: 159 ----ILKEGMLWFRPLLEFHRSELRDYLNINKITWFDDPSNENMKFDRVKMR------KA 208
Query: 298 CSFKSELQAVISACRRT-------RSYVEHVCSNLINEAVTVMDQGYAVIDLE--ILNPS 348
SF + + IS T R+ +E V I + G ++DLE L P
Sbjct: 209 QSFLNNMGLTISCLNETAQRMSVARNALELVSKEKIENITEITKMGTVMLDLEEFKLLPV 268
Query: 349 KIEDIFLSKFLALVLQFICQ-RQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGS 407
++++ S L + I + R + S KLL CKT T +GC++ S
Sbjct: 269 EVQNRIYSHILKWISGSIYRPRFISLTESIKKLL-------NCKTH-TISGCHVT----S 316
Query: 408 RGTKALVCSSIDGPLPS 424
G A +C + + S
Sbjct: 317 NGRSAEICREVSKIIKS 333
>gi|148285169|ref|YP_001249259.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong]
gi|166988062|sp|A5CFP2.1|TILS_ORITB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|146740608|emb|CAM81262.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong]
Length = 441
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 160/327 (48%), Gaps = 45/327 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG-LLAITVDHGLREESKEEANI 142
++A+ VSGG DS+AL +L W E + G + +T+DH LR ES EA+
Sbjct: 22 KLAIAVSGGTDSLALMLLVKHW-----------NEKVKGEITVLTIDHHLRSESTSEADY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
VS + I+ + V W+ + G++Q AR RY L C +H I L+ HHAD
Sbjct: 71 VSSICQN--IKLQHVTLHWIH-KGITGNIQAQARKARYHLLTNYCQEHDILHLITGHHAD 127
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D E F +RL R +G+ GL S H+ +++ ++RPL + +K D+
Sbjct: 128 DIVENFFIRLLRGAGLAGL---------------SSHNIFFVNNVRIIRPLFNITKQDLK 172
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSEL---QAVISACRRTRS 316
K + N W+ DP+N S ++R ++R L + +F EL + ++S TR+
Sbjct: 173 KYLEQQNIKWINDPSNNSNKYLRTQVRDLLKSMLISFQNNFTVELLKKRIMLSQMHLTRA 232
Query: 317 YVEHVCSNLIN---EAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPV 373
++ V + +I+ AV + G+AVID ++ + E + L+ +L + +P
Sbjct: 233 -LDSVNNEIIHYVVYAVKIYSAGFAVIDRKLFRQASPEARY--AILSYLLMIVGANTKPQ 289
Query: 374 RGST-SKLLLHYIRTFPCKTSLTAAGC 399
R S+ ++LH I+ + T T GC
Sbjct: 290 RFSSLQHIILHDIQEY--NTYKTLHGC 314
>gi|353328137|ref|ZP_08970464.1| tRNA(Ile)-lysidine synthase, partial [Wolbachia endosymbiont wVitB
of Nasonia vitripennis]
Length = 400
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 142/292 (48%), Gaps = 27/292 (9%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H++IA+ VSGG DS+ L L W + +A+TV+HGLR ES++EA+
Sbjct: 17 HNQIAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPIALTVNHGLRSESQKEAD 67
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 68 FVISYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKCLLVAHHK 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE F+LRL R SGV GL+ M + S + + I + RPLL+FS+ ++
Sbjct: 126 DDQAETFLLRLERGSGVDGLSSMDYKSFL--------------NGIYIFRPLLNFSRSEI 171
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEH 320
K W+ED +N + R R L + +E + + +R + H
Sbjct: 172 EKYANLHRLKWIEDRSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMH 231
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRP 372
+N+ V + D GY I L+ L E+I L L ++ + + +P
Sbjct: 232 YTRLALNDCVNIHDLGYIEIKLDELYKLP-EEIALRLLLYSIMAIVNKHYKP 282
>gi|372280289|ref|ZP_09516325.1| tRNA(Ile)-lysidine synthetase [Oceanicola sp. S124]
Length = 422
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 143/329 (43%), Gaps = 40/329 (12%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG----LLAITVDHGLREES 136
P I L VSGG DS+AL L A E + G L A+TVDHGLR E+
Sbjct: 20 PAEEIGLAVSGGGDSLALLYLMA--------------EIVQGSDLTLRAVTVDHGLRPEA 65
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EEA +V + +G+ E++R + G +G+LQ+ AR RY L H I +
Sbjct: 66 AEEAAMVGRHAATLGVPHEVLRWE---GWQGEGNLQDQARRARYDLLGAWARGHGIRQVA 122
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ H ADDQAE F++RLSR SGV GL+GMA +I + VRPLL+
Sbjct: 123 LGHTADDQAETFLMRLSRASGVDGLSGMAVRRRI--------------GPVTFVRPLLEA 168
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 316
+ + G W++DP+N F R+R + QA+ R S
Sbjct: 169 RRSCLRAYLTGRGASWIDDPSNEDTRF--ERVRARQALAALAPLGVTTQAIADTARNLAS 226
Query: 317 YVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 376
+ +EA ++ + L ++ + L+ L ++ P R
Sbjct: 227 VRSTLGWYAFSEAQRLVSAEAGDLVLSRAGFRVLQPEIARRILSQALLWVSGSDYPPRRR 286
Query: 377 TSKLLLHYIRTFPCKTSLTAAGCYLCPTP 405
T L L +R+ T +T GC + TP
Sbjct: 287 TLALALEAVRS---GTGMTLHGCLVLVTP 312
>gi|452963075|gb|EME68161.1| ATPase [Magnetospirillum sp. SO-1]
Length = 452
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 114/358 (31%), Positives = 173/358 (48%), Gaps = 39/358 (10%)
Query: 70 FSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
FSR M G + R+ + VSGG DS+AL +L A W G A +LA+TV
Sbjct: 20 FSRLMMPFGPFEAAPRLGVAVSGGADSLALTLLAAQWA----KARGGA------VLALTV 69
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DH LR +S EA V ++ GI ++ +W DG LQ AAR RYRL + C
Sbjct: 70 DHRLRPDSAAEAARVGAWLAGEGIVHRVL--EW-DGAKPDSDLQAAARAARYRLLGEACA 126
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
I LL+AHH DDQAE +LRL R SG+ GLA MA ++ +++
Sbjct: 127 AEGILHLLLAHHRDDQAETLLLRLGRGSGLEGLAAMA--AERPTAWGR------------ 172
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAV 307
L+RPLL + + + +DW++DP+NR+ +F R R+R G L++ +E L A
Sbjct: 173 LLRPLLPVPRQTLEATLRRRGQDWIDDPSNRNGVFARVRLRRLAGGLAAEGLTAERLAAT 232
Query: 308 ISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFIC 367
R ++ V+ + + V++ GYA + +L + E++ L L+L
Sbjct: 233 AGRLARAQAAVDAMVAEAAARHVSLYPAGYARLRPAVLA-ALPEEVGLRLLARLLLAVGG 291
Query: 368 QRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVC---SSIDGPL 422
+ P + LH T +T+ T AGC + P G + +VC + ++ PL
Sbjct: 292 EAYTPRLERLER--LHAALTAGLETARTLAGCRVVPL----GGEVVVCREPARVEAPL 343
>gi|365887904|ref|ZP_09426717.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. STM 3809]
gi|365336505|emb|CCD99248.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. STM 3809]
Length = 362
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 104/207 (50%), Gaps = 29/207 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEANI 142
+ L VSGGPDSMAL L A W+ G +G L+A+TVDHGLR E++ EA +
Sbjct: 36 LVLAVSGGPDSMALLWLAARWR----------GALREGPRLVAVTVDHGLRPEARREAQM 85
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V + + +R W D +P G + EAAR RYRL + Q +L AH D
Sbjct: 86 VKQAARQLDVTHRALR--WSDPKPATG-IPEAARLARYRLLGRAARQAGASHVLTAHTRD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++RL R SG++GL MA S +LL RPLL SK +
Sbjct: 143 DQAETVLMRLLRGSGIVGLTAMAPVS--------------ARGELLLARPLLHVSKARLI 188
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + +DPTNR P + R R+R
Sbjct: 189 ATLRSAAIGFADDPTNRDPAYTRPRLR 215
>gi|414168769|ref|ZP_11424732.1| tRNA(Ile)-lysidine synthetase [Afipia clevelandensis ATCC 49720]
gi|410887505|gb|EKS35315.1| tRNA(Ile)-lysidine synthetase [Afipia clevelandensis ATCC 49720]
Length = 349
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
+G K I L VSGGPDS+AL L A W+ Q L+A+TVDHGLR+E+
Sbjct: 19 SGWKASPAIVLAVSGGPDSVALMWLAARWRKT-LKQGPR-------LVAVTVDHGLRKEA 70
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA V H + + I ++ W +PK G L AARD RYRL + +L
Sbjct: 71 AREARDVKHLAAALDIEHRTMK--WRGDKPKTG-LPSAARDARYRLLVRAAKSCGASHIL 127
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AH DDQAE I+RLSR SG+ GLA MA + ++L RP LD
Sbjct: 128 TAHTQDDQAETVIMRLSRGSGIAGLAAMARQTD--------------RGDVVLARPFLDV 173
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
K + + + +DPTN P F R R+R + L++
Sbjct: 174 PKARLVATLEKAGIAFADDPTNHDPRFTRPRLRALMPALAA 214
>gi|189184491|ref|YP_001938276.1| MesJ protein [Orientia tsutsugamushi str. Ikeda]
gi|226695543|sp|B3CUJ5.1|TILS_ORITI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|189181262|dbj|BAG41042.1| MesJ protein [Orientia tsutsugamushi str. Ikeda]
Length = 441
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 161/327 (49%), Gaps = 45/327 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI-TVDHGLREESKEEANI 142
++A+ VSGG DS+AL +L W E + G + I T+DH LR ES EA+
Sbjct: 22 KLAIAVSGGSDSLALMLLVKHW-----------NEKVKGEITILTIDHHLRSESTSEADY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
VS + I+ + V W+ + G++Q AR RY+L C +H I L+ HHAD
Sbjct: 71 VSSICQN--IKLQHVTLHWIH-KGITGNIQAQARKARYQLLTNYCQEHDILHLITGHHAD 127
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D E F +RL R +G+ GL S H+ +++ ++RPL + +K D+
Sbjct: 128 DIVENFFIRLLRGAGLAGL---------------SSHNLFFVNNVRIIRPLFNITKQDLK 172
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSEL---QAVISACRRTRS 316
K + N W+ DP+N S ++R ++R L + +F EL + ++S T++
Sbjct: 173 KYLEQQNIKWINDPSNSSNKYLRTQVRDLLKSMLISFQHNFTVELLKKRIMLSQMHLTQA 232
Query: 317 YVEHVCSNLINEAVTVM---DQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPV 373
+E V + +I+ V V+ G+AVID ++ + E + L+ +L + +P
Sbjct: 233 -LESVNNEIIHYVVHVVKIYSAGFAVIDRKLFKKASPEARY--AILSYLLMIVGANTKPP 289
Query: 374 RGST-SKLLLHYIRTFPCKTSLTAAGC 399
R S+ ++ LH I+ + T T GC
Sbjct: 290 RFSSLQRISLHDIQEY--NTYKTLHGC 314
>gi|339319523|ref|YP_004679218.1| tRNA(Ile)-lysidine synthase [Candidatus Midichloria mitochondrii
IricVA]
gi|338225648|gb|AEI88532.1| tRNA(Ile)-lysidine synthase [Candidatus Midichloria mitochondrii
IricVA]
Length = 388
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 145/276 (52%), Gaps = 21/276 (7%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRLF 183
+ VDHGLR +S EA ++ I E++ WLD K ++ + ARD RYRL
Sbjct: 12 LIVDHGLRTDSTAEAIETKAFLNHQDI--EVIILKWLDYDEKLSISNIHQKARDARYRLL 69
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+ CI++ I L +AH+ +DQAE ++RL R +G+ GLA M S H +
Sbjct: 70 IEYCIRNDIQHLALAHNKNDQAENVLIRLGRGTGIDGLARM------------SSHKVRE 117
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE 303
N I ++RPLLD+++D++ + + N WV DP+N P F+R+R+R L + +
Sbjct: 118 N--ITVIRPLLDYTRDEIEETLKRYNWPWVNDPSNLDPKFIRSRVRELLNSNNCLLTVDK 175
Query: 304 LQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVL 363
L + + RTR Y+E + E VTV D GY +D++ + E+I L + L+ +L
Sbjct: 176 LNLLAKSALRTRDYLEKMTLAAFYEVVTVKDLGYIKLDIQKF-LTMHEEIQL-RVLSCIL 233
Query: 364 QFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGC 399
+ + Q +R + + LL+ IR F + T GC
Sbjct: 234 RSL-NNQYSIRLNNLENLLNKIRHFEKWSDATLHGC 268
>gi|163745828|ref|ZP_02153187.1| PP-loop family protein [Oceanibulbus indolifex HEL-45]
gi|161380573|gb|EDQ04983.1| PP-loop family protein [Oceanibulbus indolifex HEL-45]
Length = 423
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 135/301 (44%), Gaps = 34/301 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGG DSMAL L G Q L A+TVDHGLR E+ EA V
Sbjct: 27 RLGVAVSGGGDSMALLSLLHGLCAAAGTQ----------LEAVTVDHGLRPEAATEAAFV 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+H +G+ E ++ DG QG+LQ AAR+ RYRL + + + + H ADD
Sbjct: 77 AHHAGALGLPHETLQWRGWDG---QGNLQNAAREARYRLMADWAARRDLPCIALGHTADD 133
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE ++RL+R SGV GL+ MA S + H + +RPLL ++ +
Sbjct: 134 QAETVLMRLARRSGVDGLSAMAPQS--------------RRHGVTWLRPLLFARRESLRD 179
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVC 322
+ +WV+DP+N P + R + R SL L E L V S R +E
Sbjct: 180 YLRRAGLEWVDDPSNDDPRYARIQTRQSLAALDPLGIDVETLAEVASNMATARDALERQT 239
Query: 323 SNLINEAVTVMDQGYAVIDLEIL--NPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
+ + M+ G V+ E P +I + + L + P RG + L
Sbjct: 240 ERAAGD-ILRMEGGALVMRSEAFFAEPEEIRRRLMIRALG---KISGSAYSPRRGPVAAL 295
Query: 381 L 381
+
Sbjct: 296 I 296
>gi|307944549|ref|ZP_07659889.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4]
gi|307772298|gb|EFO31519.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4]
Length = 446
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 123/256 (48%), Gaps = 28/256 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P+ I LGVSGG DS+AL L WK + + L +TVDHGLR ES +
Sbjct: 31 LSPYKSITLGVSGGADSLALLFLVVEWK--------KRQSWSGALDVVTVDHGLRAESAK 82
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA VS + +R I L+ RP+ +LQ AR+ RY L + + L+
Sbjct: 83 EARFVSDICRSLQVRHTI-----LEWRPEGALSNLQGRAREARYALIAEHMEESSSEALV 137
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQAE F+ RL+R SGV GL+ MA S + + L+ +VRPLL
Sbjct: 138 LGHHLDDQAETFLDRLTRGSGVYGLSAMA-------SVEHQGPNGLQ-----IVRPLLSL 185
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTR 315
SKD + + + WVED +N + R R+R L LS + L RR R
Sbjct: 186 SKDQLVLSLEARGQSWVEDQSNEVEAYKRVRLRKLLKGLSDEGLSRDGLAETAKRMRRAR 245
Query: 316 SYVEHVCSNLINEAVT 331
+E S+ + VT
Sbjct: 246 EALEEWVSSFWSTRVT 261
>gi|389693717|ref|ZP_10181811.1| tRNA(Ile)-lysidine synthetase [Microvirga sp. WSM3557]
gi|388587103|gb|EIM27396.1| tRNA(Ile)-lysidine synthetase [Microvirga sp. WSM3557]
Length = 341
Score = 122 bits (305), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 112/219 (51%), Gaps = 26/219 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I VSGGPDS+AL L A W+ G +L +TVDHGLR E+ +EA V+
Sbjct: 29 IIAAVSGGPDSIALMHLLARWRVAGSRPP---------ILVVTVDHGLRPEAADEAAFVA 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+R I+ W +P+ G +QEAAR+ RYRL + L+ AH DDQ
Sbjct: 80 READALGLRHRIL--AWAGDKPRTG-IQEAAREARYRLLADLAHAAGASHLVTAHTLDDQ 136
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RL+R SG+ GLAGM + + I+ RPLL + K + +
Sbjct: 137 AETIMMRLARGSGLAGLAGM--------------RRETERRGIVHARPLLGWPKARLLDL 182
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE 303
C+ +VEDP+N + L+ R R R + L++ +E
Sbjct: 183 CRSQGWRFVEDPSNANTLYARVRWRRLMPLLAAEGLDAE 221
>gi|221640121|ref|YP_002526383.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131]
gi|221160902|gb|ACM01882.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131]
Length = 412
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 159/344 (46%), Gaps = 54/344 (15%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A +TG + A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA--ETGIATR------------AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V+ + +G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVARVCAGLGVPHDILRWEGWDGR---GNLMDQARRARLRLIADW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + + H DD AE F++RL+R +GV GLA M +
Sbjct: 104 ARAAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVR--------------RAEG 149
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA 306
++ +RPLL ++++ + W+EDP+N +P F R R+R ++ L+ + E A
Sbjct: 150 MVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFERVRVRQAMESLADLGLRPERLA 209
Query: 307 VISACRRTRSYVEHVCSNL---INEA---VTVMDQGYAVIDLEILN-PSKIEDIFLSKFL 359
++ S++ V L + EA + +D+G V+ L P +I L + L
Sbjct: 210 DVA------SHLAEVRDALDLQLREAAGRLAQVDRGDVVLASAALELPPEI----LRRLL 259
Query: 360 ALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 403
LQ++ + RG L IR T++T GC L P
Sbjct: 260 RAALQWVASAEYGPRGPA---LGQAIRRLSEGTTVTLHGCRLAP 300
>gi|402848945|ref|ZP_10897191.1| tRNA(Ile)-lysidine synthetase [Rhodovulum sp. PH10]
gi|402500821|gb|EJW12487.1| tRNA(Ile)-lysidine synthetase [Rhodovulum sp. PH10]
Length = 366
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 113/213 (53%), Gaps = 9/213 (4%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGGPDS AL VL A W+ AG LLA+TVDHGLR ++ EA V+
Sbjct: 33 LVIAVSGGPDSTALLVLAARWRK---TLQAGAGPR---LLAVTVDHGLRPQAALEAQAVA 86
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+ R W+ +P G +QEAAR RYRL + + +L AH DDQ
Sbjct: 87 ALAQSLGVPHLTTR--WVGEKPATG-IQEAARIARYRLLAEAARETGARHVLTAHTRDDQ 143
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE + RL+R SGV GL+GMA + + + H ++LVRP LD +K +
Sbjct: 144 AETVLFRLARGSGVTGLSGMARVAPLPVAAHTGRHGAPAADPVVLVRPFLDVAKARLIAT 203
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
+ + + ED +NR P + R R+R L +L++
Sbjct: 204 LRAEHIAFAEDASNRDPRYTRARLRALLPNLAT 236
>gi|77464237|ref|YP_353741.1| cell cycle protein [Rhodobacter sphaeroides 2.4.1]
gi|77388655|gb|ABA79840.1| Probable cell cycle protein [Rhodobacter sphaeroides 2.4.1]
Length = 412
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 156/341 (45%), Gaps = 48/341 (14%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A EAG A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA-----------EAGIATR---AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V +D+G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVGRVCADLGVPHDILRWEGWDGR---GNLMDQARRARLRLIAGW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + + H DD AE F++RL+R +GV GLA M +
Sbjct: 104 ARGAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVR--------------RAEG 149
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA 306
++ +RPLL ++++ + W+EDP+N +P F R R+R ++ L+ + E A
Sbjct: 150 MVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFDRVRMRQAMESLADLGLRPERLA 209
Query: 307 VISACRRTRSYVEHVCSNLINEA---VTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALV 362
++ + V + EA + +D+G V+ +L P +I L + L
Sbjct: 210 DVAG---HLAEVRDALDLQLREAAGRLARVDRGDVVLAPPVLELPPEI----LRRLLQAA 262
Query: 363 LQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 403
LQ++ + RG L +R T++T GC L P
Sbjct: 263 LQWVASAEYGPRGPA---LGEAMRRVFDGTTVTLHGCRLAP 300
>gi|430812072|emb|CCJ30471.1| unnamed protein product [Pneumocystis jirovecii]
Length = 229
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 98/197 (49%), Gaps = 25/197 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ VSGG DSMA+CVL F + + TVDH LRE+S+EEA V
Sbjct: 4 LGAAVSGGCDSMAICVLFQ--------------HFREKMCVFTVDHELREKSREEAEAVH 49
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
VS MG + +I+ W + ++ AAR+ RY L + C++ I VL + HH+DDQ
Sbjct: 50 RIVSGMGFQHKILSMKWPKEKIPIKSIENAAREQRYTLLTRACLESDIRVLFLGHHSDDQ 109
Query: 205 AELFILRLSRNSGVLGLAGM---AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
AE +R SG GLAGM A + I Y+ ++ L RP LD K +
Sbjct: 110 AETVFMRFIEKSGPDGLAGMQKLALNPMI-GKIMYA-------ENVFLCRPFLDIPKIVL 161
Query: 262 YKICQGGNRDWVEDPTN 278
IC+ N W EDPTN
Sbjct: 162 KNICRSNNIQWFEDPTN 178
>gi|402496762|ref|YP_006556022.1| ATPase [Wolbachia endosymbiont of Onchocerca ochengi]
gi|398650035|emb|CCF78205.1| ATPase [Wolbachia endosymbiont of Onchocerca ochengi]
Length = 439
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 111/208 (53%), Gaps = 27/208 (12%)
Query: 83 HRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++IA+ VSGG DS++L L W K ++ +A+TV+HGLR SKEEA
Sbjct: 27 NKIAVAVSGGVDSVSLLHLMVSWTKKRQYSLP----------VALTVNHGLRSGSKEEAE 76
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + +G++ + W + + +G++Q AR RY+L + C H I LLIAHH
Sbjct: 77 FVLNYTKKLGVKESFI-LKW-ENQSIKGNIQLQARKARYKLLTEWCKNHGIKYLLIAHHK 134
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE F+LRL R SG+ GL+ M + S + I ++RPLL+FS+ ++
Sbjct: 135 DDQAETFLLRLERGSGIDGLSSMDWKSSF--------------NGIHILRPLLNFSRSEV 180
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ W+ED +N+S + R R
Sbjct: 181 ERYANLHQLRWIEDKSNQSLTYRRTLYR 208
>gi|42521051|ref|NP_966966.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|61217299|sp|Q73FR9.1|TILS_WOLPM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|42410792|gb|AAS14900.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 431
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 150/319 (47%), Gaps = 28/319 (8%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++++A+ VSGG DS+ L L W + +A+TV+HGLR ES++EA+
Sbjct: 18 NNQVAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPIALTVNHGLRPESQKEAD 68
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 69 FVVSYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHK 126
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE F+LRL R SGV GL+ M + S + + I + RPLL+FS+ ++
Sbjct: 127 DDQAETFLLRLERGSGVDGLSSMDYKSFL--------------NGIDIFRPLLNFSRSEI 172
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEH 320
K + W+ED +N + R R L + +E + + +R + H
Sbjct: 173 EKYAKLHRLKWIEDRSNHDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMH 232
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
N+ V V D GY I L E+I L L ++ + +P R S+
Sbjct: 233 YTRLAFNDCVNVHDLGYIEIKLSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYSSLIA 290
Query: 381 LLHYIRTFPCKTSLTAAGC 399
+ + I + T +GC
Sbjct: 291 IFNRILQKDSNVNCTLSGC 309
>gi|225677084|ref|ZP_03788088.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225590880|gb|EEH12103.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 422
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 150/319 (47%), Gaps = 28/319 (8%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++++A+ VSGG DS+ L L W + A+TV+HGLR ES++EA+
Sbjct: 9 NNQVAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPTALTVNHGLRPESQKEAD 59
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 60 FVVSYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHK 117
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE F+LRL R SGV GL+ M + S + + I + RPLL+FS+ ++
Sbjct: 118 DDQAETFLLRLERGSGVDGLSSMDYKSFL--------------NGIYIFRPLLNFSRSEI 163
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEH 320
K + WVED +N + R R L + +E + + +R + H
Sbjct: 164 EKYAKLHRLKWVEDRSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMH 223
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
N+ V V D GY I L E+I L L ++ + +P R ++ +
Sbjct: 224 YTRLAFNDCVNVHDLGYIEIKLSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYNSLIV 281
Query: 381 LLHYIRTFPCKTSLTAAGC 399
+ + I + T +GC
Sbjct: 282 IFNKILQKDSNVNCTLSGC 300
>gi|157827822|ref|YP_001496886.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389]
gi|166988064|sp|A8GY99.1|TILS_RICB8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|157803126|gb|ABV79849.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389]
Length = 430
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 172/383 (44%), Gaps = 54/383 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L ++VDH LR++SK+E +
Sbjct: 21 KIAIAVSGGSDSVALLYLANIWAKKN---NIE-------LFVLSVDHNLRDQSKQEIEYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +D+G++ + + D + +LQE AR RY L +C + I VLL AHH DD
Sbjct: 71 QNTANDLGLKFYSL---FFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL R SGV GL SS + + H++ + ++RPL + K ++
Sbjct: 128 YIENFCLRLERKSGVFGL----------SSSSVNWHNNTQ-----IIRPLFNIPKSELVN 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEH 320
N W ED +N S + RN IR L K ++ Q ++ + E
Sbjct: 173 YLATNNIKWFEDQSNLSTKYRRNTIRQKLAK-EEVYIKDDIITQQIKVNELIENKFKPEL 231
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
+ + I E+V + + G+A +DL + S + + +L I +QR R + +
Sbjct: 232 ISA--IAESVKISEYGFAFLDL--IKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEP 287
Query: 381 LLHYIR-TFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLP-SKLEL---------F 429
+L IR + K +L GC + K L+ LP SKL L F
Sbjct: 288 ILKLIRQSLDFKNTL--HGCVIKRMQN----KLLIYREFGKKLPESKLLLDKQLVWDNRF 341
Query: 430 QIHSDGEQRHCVTDVEQILEDAK 452
+I + + +CV LED K
Sbjct: 342 RITKNHDIENCVATYLS-LEDYK 363
>gi|383769450|ref|YP_005448513.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. S23321]
gi|381357571|dbj|BAL74401.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. S23321]
Length = 356
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 110/220 (50%), Gaps = 25/220 (11%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
A LK + L VSGGPDS+AL L A W+ ++ + L +TVDHGLR E+
Sbjct: 19 AELKSSPALVLAVSGGPDSVALMWLAARWRRS-LSRGPQ-------LTVVTVDHGLRPEA 70
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA V +++G+ +R W +PK+G L AAR+ RYRL + + +L
Sbjct: 71 AREAREVKQLATELGLTHRTLR--WRGVKPKRG-LPAAAREARYRLLAQAARKAGASHVL 127
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AH DDQAE ++RL R SG+ GL+ MA ++ I+L RPLLD
Sbjct: 128 TAHTRDDQAETLLMRLVRGSGLAGLSAMARRTE--------------RDGIVLARPLLDV 173
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 296
K + + + +DPTNR F R R+R L L+
Sbjct: 174 PKSQLVATLKRAKIGFADDPTNRDTAFTRPRLRALLPQLA 213
>gi|58698494|ref|ZP_00373399.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225630913|ref|YP_002727704.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
gi|254764825|sp|C0R4S1.1|TILS_WOLWR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|58534988|gb|EAL59082.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225592894|gb|ACN95913.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
Length = 431
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 150/319 (47%), Gaps = 28/319 (8%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++++A+ VSGG DS+ L L W + A+TV+HGLR ES++EA+
Sbjct: 18 NNQVAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPTALTVNHGLRPESQKEAD 68
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 69 FVVSYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHK 126
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE F+LRL R SGV GL+ M + S + + I + RPLL+FS+ ++
Sbjct: 127 DDQAETFLLRLERGSGVDGLSSMDYKSFL--------------NGIYIFRPLLNFSRSEI 172
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEH 320
K + W+ED +N + R R L + +E + + +R + H
Sbjct: 173 EKYAKLHRLKWIEDRSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMH 232
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
N+ V V D GY I L E+I L L ++ + +P R ++ +
Sbjct: 233 YTRLAFNDCVNVHDLGYIEIKLSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYNSLIV 290
Query: 381 LLHYIRTFPCKTSLTAAGC 399
+ + I + T +GC
Sbjct: 291 IFNKILQKDSNVNCTLSGC 309
>gi|332559126|ref|ZP_08413448.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N]
gi|332276838|gb|EGJ22153.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N]
Length = 412
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 153/339 (45%), Gaps = 44/339 (12%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A EAG A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA-----------EAGIATR---AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V+ + +G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVARVCAGLGVPHDILRWEGWDGR---GNLMDQARRARLRLIAGW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + + H DD AE F++RL+R +GV GLA M +
Sbjct: 104 ARGAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVR--------------RAEG 149
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQ 305
++ +RPLL ++++ + W+EDP+N +P F R R+R ++ L+ + E L
Sbjct: 150 MVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFDRVRMRQAMESLADLGLRPERLA 209
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQ 364
V R ++ S V D+G V+ +L P +I L + L LQ
Sbjct: 210 DVAGHLAEVRDALDLQLSEAAGRLARV-DRGDVVLAPPVLELPPEI----LRRLLQAALQ 264
Query: 365 FICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 403
++ + RG L +R T++T GC L P
Sbjct: 265 WVASAEYGPRGPA---LGEAMRRVFDGTTVTLHGCRLAP 300
>gi|212529304|ref|XP_002144809.1| PP-loop family protein [Talaromyces marneffei ATCC 18224]
gi|210074207|gb|EEA28294.1| PP-loop family protein [Talaromyces marneffei ATCC 18224]
Length = 633
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 126/267 (47%), Gaps = 52/267 (19%)
Query: 66 YREAFSRRMAMAGLKP-HH---RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
+REA++ + P +H RI + VSGGPDSMAL L + N + F+
Sbjct: 22 FREAWTNILPRYQRAPVNHIPRRIGIAVSGGPDSMALAYLCRQLQITRPELNLDVKAFV- 80
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQEAARDMR 179
VDH REES EEA++V+ +S++ I+ E++ DWL G KQ + AR R
Sbjct: 81 ------VDHKFREESTEEAHMVTKWLSNLDIQSEVLTLDWLPGESPKKQMAFETLARTKR 134
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI--------- 230
Y+ C+++++ LLI HH DD E +LR++ + + GLAG+A ++I
Sbjct: 135 YQALGIACLENRLNTLLIGHHLDDNVETGLLRMTPTAQLEGLAGIAPVARIPECHGLWGV 194
Query: 231 ---------------------------FSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
FS+ + D+ +LL RPLL F K + +
Sbjct: 195 SESGSIETIRGRQRSFEFDLKEGKMTHFSTVDWKF--DMTTGGVLLCRPLLPFYKSSILE 252
Query: 264 ICQGGNRDWVEDPTNRSP-LFVRNRIR 289
C+ +V DPTN P L +RN IR
Sbjct: 253 TCREAKVPYVTDPTNSDPTLTIRNTIR 279
>gi|91206209|ref|YP_538564.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C]
gi|122425129|sp|Q1RGN9.1|TILS_RICBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|91069753|gb|ABE05475.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C]
Length = 430
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 171/383 (44%), Gaps = 54/383 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L ++VDH LR++SK+E +
Sbjct: 21 KIAIAVSGGSDSVALLYLANIWAKKN---NIE-------LFVLSVDHNLRDQSKQEIEYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +D+G++ + + D + +LQE AR RY L +C + I VLL AHH DD
Sbjct: 71 QNTANDLGLKFYSL---FFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL R SGV GL SS + + H++ + ++RPL + K ++
Sbjct: 128 YIENFCLRLERKSGVFGL----------SSSSVNWHNNTQ-----IIRPLFNIPKSELVN 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEH 320
N W ED +N S + RN IR L K ++ Q ++ + E
Sbjct: 173 YLATNNIKWFEDQSNLSTKYRRNTIRQKLAK-EEVYIKDDIITQQIKVNELIENKFKPEL 231
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
+ + I E+V + + G+A +DL + S + + +L I +QR R + +
Sbjct: 232 ISA--IAESVKISEYGFAFLDL--IKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEP 287
Query: 381 LLHYIR-TFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLP-SKLEL---------F 429
+L IR + K +L GC + K L+ LP SKL L F
Sbjct: 288 ILKLIRQSLDFKNTL--HGCVIKRMQN----KLLIYREFGKKLPESKLLLDKQLVWDNRF 341
Query: 430 QIHSDGEQRHCVTDVEQILEDAK 452
+I + +CV LED K
Sbjct: 342 RITKNHNIENCVATYLS-LEDYK 363
>gi|402702819|ref|ZP_10850798.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia helvetica C9P9]
Length = 430
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 129/263 (49%), Gaps = 36/263 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KIAVAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNILKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
N W ED +N S + RN IR L K+ A+IS +T +E+
Sbjct: 173 YLVNHNIKWFEDESNLSDKYKRNLIRQKLAK-EEDYIKA---AIISQQLKTNKLIENEFK 228
Query: 324 ----NLINEAVTVMDQGYAVIDL 342
+ I EAV + + G+A +DL
Sbjct: 229 PELISAIVEAVKIFEYGFAFLDL 251
>gi|418054438|ref|ZP_12692494.1| tRNA(Ile)-lysidine synthase [Hyphomicrobium denitrificans 1NES1]
gi|353212063|gb|EHB77463.1| tRNA(Ile)-lysidine synthase [Hyphomicrobium denitrificans 1NES1]
Length = 444
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 107/210 (50%), Gaps = 23/210 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL VL A W+ +NG + L A TVDH LR E+ EA V+
Sbjct: 27 VVLAVSGGPDSMALLVLAAEWRQ---RRNGA----LPSLSAATVDHRLRPEASREAGFVA 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC--IQHQIGVLLIAHHAD 202
+G+ + W D +P G + +AAR RYRL + + ++ AHH D
Sbjct: 80 RESLRLGLPHATL--PWTDEKPLSG-IPDAARQARYRLLEAHARSLAASTVAVVTAHHLD 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F +RL+R +GV GL+ M + L+ ++ L+RPLL F K +
Sbjct: 137 DQAETFAMRLARGAGVTGLSAMPAERAL-----------LEGSTVRLLRPLLPFPKSRLI 185
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ V+DPTN+ + R RIR +L
Sbjct: 186 ATLEARGVPCVDDPTNKDSRYERARIRHAL 215
>gi|407775307|ref|ZP_11122602.1| ATPase [Thalassospira profundimaris WP0211]
gi|407281732|gb|EKF07293.1| ATPase [Thalassospira profundimaris WP0211]
Length = 495
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 133/272 (48%), Gaps = 33/272 (12%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
MA A + I +GVSGG DSMAL +L W Q G L+A+TVDHGLR
Sbjct: 41 MAFAPFETAPEILVGVSGGADSMALALLAHDWCQA---QGGR-------LVAVTVDHGLR 90
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+ + +EA V+ ++ I E + W +PK G +QE AR RY++F + I
Sbjct: 91 KAASDEARWVAAELARHNI--EHITKHWQGEKPK-GAVQEKARQARYQIFDDLMRDTGIF 147
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253
LL+AHHA DQ E +R R + +G AGM S++ + Y ++RPL
Sbjct: 148 HLLVAHHAGDQRETIAMRRDRGTTPIGQAGM--SARRYLRYGR------------VLRPL 193
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR 313
L +K D+ + W+EDP+N F R R+R + + S ++ A SA
Sbjct: 194 LGVAKTDLVATLTARGQAWIEDPSNIDDKFERVRVRRAFA--AGASHPPDINADASA--- 248
Query: 314 TRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 345
R +E L+ AVT+ G A+++ ++L
Sbjct: 249 -RRDIETGIGRLLAAAVTLHANGVAILNPDVL 279
>gi|254503322|ref|ZP_05115473.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11]
gi|222439393|gb|EEE46072.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11]
Length = 459
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 143/309 (46%), Gaps = 28/309 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
LK +IAL VSGG DS+ L + W++ +N E + + VDH LR ES +
Sbjct: 30 LKNFSKIALAVSGGGDSVCLLLAFCEWRS---RRNWEGACEV-----VVVDHQLRPESSQ 81
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA V G+RC I++ W D +P+ G +QEAAR RY+L K +L+A
Sbjct: 82 EACFVRELSEQHGLRCHILK--WTDDKPETG-VQEAARGARYQLIAKQTAVSGFEAVLLA 138
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL-LVRPLLDFS 257
HH DDQAE F+ RL+R SG+ GL MA D+ + + L L+RP L
Sbjct: 139 HHLDDQAETFLDRLTRGSGLNGLGAMA-------------SDEPEGPAGLRLLRPFLGVP 185
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK-SELQAVISACRRTRS 316
K + + ++ W +DP+N+S + R+R+R LS S + RR R
Sbjct: 186 KSRLLATLEERDQKWCDDPSNKSLKYKRSRLRSISSTLSEEGLSPSRIATTARQLRRARE 245
Query: 317 YVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 376
+E V + L + V G + E F + L L+++ + R +
Sbjct: 246 ALEMVLAELFRQHVEEHPAGPVKTSTLVFRAQSEE--FRLRLLILMIERVTGRVYQPKLR 303
Query: 377 TSKLLLHYI 385
+ L H+I
Sbjct: 304 KIEALDHWI 312
>gi|379022442|ref|YP_005299103.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
CA410]
gi|376323380|gb|AFB20621.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
CA410]
Length = 432
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 131/262 (50%), Gaps = 34/262 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RIA+ VSGG DS+AL LT W N E L I+VDH LRE+SK+E + +
Sbjct: 23 RIAVAVSGGSDSVALLYLTNVWAKKN---NIE-------LFVISVDHNLREQSKQETHYI 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I LL AHH DD
Sbjct: 73 QNISNSLNRKHYNLS---FDHQNNFSNLQERAREGRYNLMTNLCLELDILALLTAHHEDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL+ SS I + H++++ +VRPL + K ++ +
Sbjct: 130 YVENFCLRLERNSGIFGLS----SSNI------NWHNNIQ-----IVRPLYNIPKSELVE 174
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEH 320
N W ED +N S + RN +R L K+++ Q I+ + E
Sbjct: 175 YLVNHNIKWFEDESNLSDKYKRNLVRQKLAK-EEDYIKADIILQQLKINNLLDDKFKPEL 233
Query: 321 VCSNLINEAVTVMDQGYAVIDL 342
+ + I EAV + + G+A +DL
Sbjct: 234 ISA--IAEAVKIFEYGFAFLDL 253
>gi|126463079|ref|YP_001044193.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029]
gi|126104743|gb|ABN77421.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029]
Length = 412
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 156/341 (45%), Gaps = 48/341 (14%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A EAG A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA-----------EAGIATR---AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V+ + +G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVARVCAGLGVPHDILRWEGWDGR---GNLMDQARRARLRLIAGW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + + H DD AE F++RL+R +GV GLA M +
Sbjct: 104 ARGAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVR--------------RAEG 149
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA 306
++ +RPLL ++++ + W+EDP+N +P F R R+R ++ L+ + E A
Sbjct: 150 MVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFDRVRVRQAMESLADLGLRPERLA 209
Query: 307 VISACRRTRSYVEHVCSNLINEA---VTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALV 362
++ + V + EA + +D+G V+ +L P +I L + L
Sbjct: 210 DVAG---HLAEVRDALDLQLREAAGRLARVDRGDVVLAPPVLELPPEI----LRRLLRAA 262
Query: 363 LQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 403
LQ++ + RG L +R T++T GC L P
Sbjct: 263 LQWVASAEYGPRGPA---LGEAMRRVFDGTTVTLHGCRLAP 300
>gi|190571198|ref|YP_001975556.1| tRNA(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018598|ref|ZP_03334406.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|254764824|sp|B3CLY6.1|TILS_WOLPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|190357470|emb|CAQ54904.1| trna(ile)-lysidine synthase (ec 6.3.4.-) (trna(ile)-lysidine
synthetase) (trna(ile)-2-lysyl-cytidine synthase)
[Wolbachia endosymbiont of Culex quinquefasciatus Pel]
gi|212995549|gb|EEB56189.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 430
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 151/319 (47%), Gaps = 28/319 (8%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H++IA+ VSGG DS+ L L W + +A+TV+HGLR ES++EA+
Sbjct: 17 HNQIAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPIALTVNHGLRSESQKEAD 67
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ ++G + + +W + + +G++Q AR RY+L + C + + LL+AHH
Sbjct: 68 FIISYAKELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKCLLVAHHK 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE F+LRL R SGV GL+ M + S + + I + RPLL+FS+ ++
Sbjct: 126 DDQAETFLLRLERGSGVDGLSSMDYKSFL--------------NGIYIFRPLLNFSRSEI 171
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEH 320
+ + W+ED +N + R R L + +E + + +R + H
Sbjct: 172 ERYAKLHQLRWIEDRSNYDLKYRRTLYRNLLKASDNQDVLTERICLTALHMKRAAKALMH 231
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
++ V V D GY I L E+I L L ++ + +P R ++ +
Sbjct: 232 YTRLAFDDCVNVHDFGYIEIKLSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYNSLIV 289
Query: 381 LLHYIRTFPCKTSLTAAGC 399
+ + I + T +GC
Sbjct: 290 IFNKILQKGSNVNCTLSGC 308
>gi|154247011|ref|YP_001417969.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2]
gi|154161096|gb|ABS68312.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2]
Length = 368
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 112/234 (47%), Gaps = 25/234 (10%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
A PH RI + VSGGPDS AL L A W+ G +G L+A TVDHGLR E
Sbjct: 23 FAPFTPHPRILIAVSGGPDSTALLYLAARWRAG--RASGP------DLIAATVDHGLRAE 74
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+ EA V + +G+ I+ W +P G +QEAAR+ RY L + +
Sbjct: 75 AAAEAEAVGAFATFLGVPHRIL--IWQGAKPTHG-IQEAAREARYDLLADAAREAGATAI 131
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+AH DDQAE + RL+R SG+ GL+GM D + L+RPLLD
Sbjct: 132 ALAHTRDDQAETVLFRLARGSGLSGLSGM--------------RGDAARDGLALLRPLLD 177
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
K + + + +V DP+N P F R R+R L+ + AV++
Sbjct: 178 VPKARLVATLEAASVAFVRDPSNSDPRFARPRLRAMAPTLAGEGLDARRLAVLA 231
>gi|429206216|ref|ZP_19197484.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. AKP1]
gi|428190937|gb|EKX59481.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. AKP1]
Length = 412
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 152/339 (44%), Gaps = 44/339 (12%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
RE F R GL+ + L VSGG DSMAL L A EAG A+
Sbjct: 4 RERFLR---GPGLRETRALGLAVSGGGDSMALLHLAA-----------EAGIATR---AV 46
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR E+ +EA V+ + +G+ +I+R + DGR G+L + AR R RL
Sbjct: 47 TVDHGLRPEAADEARAVARVCAGLGVPHDILRWEGWDGR---GNLMDQARRARLRLIADW 103
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + + H DD AE F++RL+R +GV GLA M +
Sbjct: 104 ARAAGLEAVALGHTRDDVAETFLMRLARGAGVDGLAAMQAVR--------------RAEG 149
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQ 305
++ +RPLL ++++ + W+EDP+N +P F R R+R ++ L+ + E L
Sbjct: 150 MVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFERVRVRQAMESLADLGLRPERLA 209
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQ 364
V S R ++ V D+G V+ L P +I L + L LQ
Sbjct: 210 DVASHLAEVRDALDLQLREAAGRLAQV-DRGDVVLASAALELPPEI----LRRLLRAALQ 264
Query: 365 FICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCP 403
++ + RG L +R T++T GC L P
Sbjct: 265 WVASAEYGPRGPA---LGEAMRRVFDGTTVTLHGCRLAP 300
>gi|338737863|ref|YP_004674825.1| tRNA(Ile)-lysidine synthase [Hyphomicrobium sp. MC1]
gi|337758426|emb|CCB64251.1| tRNA(Ile)-lysidine synthase [Hyphomicrobium sp. MC1]
Length = 458
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 119/245 (48%), Gaps = 33/245 (13%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKT--GGFNQNGEAGEFIDGLLAITVDHGL 132
A+A L + L VSGGPDSMAL L A W+ G N + TVDHGL
Sbjct: 17 ALAVLARFDHVVLAVSGGPDSMALMALAAEWRARFEGLKPN---------VSVATVDHGL 67
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ---KVCIQ 189
R S+ EA +V+ +G+ I+ W +P G L AAR+ RYRL + K
Sbjct: 68 RARSRHEAEMVAVEARRLGLPHAIL--SWDGEKPTSG-LSAAAREARYRLLEAHAKTIAA 124
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS-IL 248
I ++ AHH DDQAE F +RL+R +G+ GLA M L++ + I+
Sbjct: 125 ANIAIV-TAHHRDDQAETFAMRLARGAGLDGLASM------------RGERPLRDGAPIV 171
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 308
L+RPLL F K + + EDPTNR + R R+R +L + SE A+
Sbjct: 172 LMRPLLAFPKARLLATVALRGITYAEDPTNRDRRYERARVRSTLEQMEEAGLSSE--AIA 229
Query: 309 SACRR 313
++ RR
Sbjct: 230 TSARR 234
>gi|254466830|ref|ZP_05080241.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
gi|206687738|gb|EDZ48220.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
Length = 417
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 152/329 (46%), Gaps = 48/329 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + +SGG DSMAL L + +GE L A TVDHGLR S +EA
Sbjct: 23 KLGIALSGGGDSMALMHL--------LHDCFGSGEVQ--LFAATVDHGLRPGSADEAAAA 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +GI E++ W D RP+ G+LQ AR RY L QH I VL + H ADD
Sbjct: 73 GAAAARLGIPHEVLH--WAD-RPQDGNLQAQARAARYELLCGWARQHGIPVLALGHTADD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE ++R++R SGV GL+GMA A H + L+RPLLD ++ ++ +
Sbjct: 130 QAETVLMRMARASGVTGLSGMA---------ARRTHK-----GVTLLRPLLDVTRSELRR 175
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS-----ACRRTRSYV 318
+ DW EDP+N F R R+R +L L+ E+ A ++ A YV
Sbjct: 176 YLEARGVDWAEDPSNEDTRFERVRVRKALEHLAPLGLTPEVLASVARNMSKAREALDWYV 235
Query: 319 EHVCSNLIN---EAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRG 375
+L + AV + + + + +EI + + L +Q++ P R
Sbjct: 236 FLAARDLAHVQAGAVVLCQRKFRTLPVEISH----------RLLVRAVQWVSGAAYPPRR 285
Query: 376 STSKLLLHYIRTFPCKTSLTAAGCYLCPT 404
+ + R +S T AGC+L T
Sbjct: 286 VPMEKAVQAARN---GSSATLAGCHLVST 311
>gi|157803229|ref|YP_001491778.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
McKiel]
gi|157784492|gb|ABV72993.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
McKiel]
Length = 432
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 131/262 (50%), Gaps = 34/262 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RIA+ VSGG DS+AL LT W N E L I+VDH LRE+SK+E + +
Sbjct: 23 RIAVAVSGGSDSVALLYLTNVWAKKN---NIE-------LFVISVDHNLREQSKQETHYI 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I LL AHH DD
Sbjct: 73 QNISNSLNRKHYNLS---FDHQNNFSNLQERAREGRYNLMTNLCLELDILALLTAHHEDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL+ SS I + H++++ ++RPL + K ++ +
Sbjct: 130 YVENFCLRLERNSGIFGLS----SSNI------NWHNNIQ-----IIRPLYNIPKSELVE 174
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEH 320
N W ED +N S + RN +R L K+++ Q I+ + E
Sbjct: 175 YLVNHNIKWFEDESNLSDKYKRNLVRQKLAK-EEDYIKADIILQQLKINNLLDDKFKPEL 233
Query: 321 VCSNLINEAVTVMDQGYAVIDL 342
+ + I EAV + + G+A +DL
Sbjct: 234 ISA--IAEAVKIFEYGFAFLDL 253
>gi|426401005|ref|YP_007019977.1| tRNA(Ile)-lysidine synthetase [Candidatus Endolissoclinum patella
L2]
gi|425857673|gb|AFX98709.1| tRNA(Ile)-lysidine synthetase [Candidatus Endolissoclinum patella
L2]
Length = 457
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 137/324 (42%), Gaps = 30/324 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL T W A + LL +TVDH LR+ES EA V+
Sbjct: 35 VVLAVSGGPDSMALLYFTDLW----------ARQRKRELLVLTVDHSLRQESANEAAEVA 84
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
RV MG +++ W +P G +Q AARD+R+ L + C + +L AHH DDQ
Sbjct: 85 RRVIAMGHTHQVL--TWHGTKPATG-IQAAARDIRFTLLSEACYRAGALTMLFAHHRDDQ 141
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE + R++ N+G GLA M+ + + + L RP L KD +
Sbjct: 142 AETLLHRINGNTGPEGLASMSLVT--------------SRNGLRLARPFLSVPKDRLLAT 187
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCS 323
C + D++ DP+N F R ++R LS + L + SA R + +
Sbjct: 188 CTAASLDYINDPSNEDLRFARAKLRHLKPALSEIGLTVDRLTRLSSAMGIARCAMRKIVG 247
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
+ + V G +DL L D F + L V + P L+
Sbjct: 248 SWLARYAVVYACGTCRLDLFSLQAGP--DYFTAVVLRCVFNIVGGFGHPPSSEAMTRLIE 305
Query: 384 YIRTFPCKTSLTAAGCYLCPTPGS 407
+I T GC L GS
Sbjct: 306 WITGKSAVWRRTLRGCLLQIDNGS 329
>gi|414163904|ref|ZP_11420151.1| tRNA(Ile)-lysidine synthetase [Afipia felis ATCC 53690]
gi|410881684|gb|EKS29524.1| tRNA(Ile)-lysidine synthetase [Afipia felis ATCC 53690]
Length = 347
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 109/225 (48%), Gaps = 25/225 (11%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R AG K + L VSGGPDS+AL L A W+ + + LLA+TVDHGL
Sbjct: 17 RQLFAGWKRIPALVLAVSGGPDSVALLWLAARWRKS-LKKGPD-------LLAVTVDHGL 68
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R + EA V S +GI ++ W +PK G + +AAR+ RY L +
Sbjct: 69 RAAASHEARDVKRLASALGIAHRTLK--WSGTKPKTG-VPQAAREARYTLLARAARSASA 125
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
++ AH DDQAE ++RLSR SG+ GL GMA ++ H I L+RP
Sbjct: 126 VAVVTAHTQDDQAETILMRLSRGSGITGLGGMAAQTE--------------RHGIGLLRP 171
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
LD K + + DPTN P + R+R+R + L+S
Sbjct: 172 FLDIPKARLVATLDRARIGYASDPTNHDPAYTRSRLRTLMPVLAS 216
>gi|456352854|dbj|BAM87299.1| tRNA(Ile)-lysidine synthase [Agromonas oligotrophica S58]
Length = 363
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 113/225 (50%), Gaps = 25/225 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L +SGGPDSMAL L A W++ E+G L+A+TVDHGLR ES EA +V
Sbjct: 36 LVLAISGGPDSMALMWLAARWRS-----TLESGPR---LVAVTVDHGLRRESAREARMVK 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+GI VR W D +P+ G + EAAR RYRL + Q + AH DDQ
Sbjct: 88 EVAGRLGIPHRTVR--WRDAKPEAG-IPEAARLARYRLLARAARQAGASHVATAHTRDDQ 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RL R SG++GLA MA A S + L LL P K +
Sbjct: 145 AETVLMRLLRGSGIVGLAAMA---------AISEREGLLLARPLLELP-----KARLVAT 190
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
+ + + +DPTNR P F R R+R + L++ S A ++
Sbjct: 191 LRSADVPFADDPTNRDPAFTRPRLRALMPALAAEGGDSRTLATLA 235
>gi|300023924|ref|YP_003756535.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC
51888]
gi|299525745|gb|ADJ24214.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC
51888]
Length = 443
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 113/231 (48%), Gaps = 25/231 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL VL + W+ +NG L TVDHGLR ES EA V+
Sbjct: 27 VVLAVSGGPDSMALLVLASEWRQ---RRNGAP----PSLSVATVDHGLRPESPREAEFVA 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF--QKVCIQHQIGVLLIAHHAD 202
+G+ V W +P +G + +AAR RYRL + ++ AHH
Sbjct: 80 SEAQRLGL--PHVTLPWTGEKPSRG-IPDAARRARYRLLDDHARALSASDVAVVTAHHQG 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F +RL+R +GV GLAGM + + ++ LVRPLL F+K +
Sbjct: 137 DQAETFAMRLARGAGVNGLAGMPAERVLH-----------EGSTVSLVRPLLAFAKSRLI 185
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR 313
+ V+DP+N + R R+R +L DL + A+ ++ RR
Sbjct: 186 ATLEARGLSSVDDPSNSDHRYERARMRSALSDLDAAGISP--AALATSARR 234
>gi|190345978|gb|EDK37960.2| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC
6260]
Length = 471
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 13/220 (5%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
+ + +++ F +K R+A+ +SGG DSM L L + +K + E
Sbjct: 1 MITIAQFQNCFHACFGATTVKAPRRLAIALSGGVDSMCLAYLLSQYK--------QVYEP 52
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
L +IT+DHG R +S+ EA V+ V + GI + R + K + +E AR MR
Sbjct: 53 SLELHSITIDHGYRSDSEIEAQKVAQVVQNWGILPSVSRLKYSCNPAKISNFEEVARTMR 112
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y F++ C + I LL+AH+ DDQ E FI RL +NS + GLAG+ ++ +
Sbjct: 113 YAEFERFCRGNNIEGLLVAHNLDDQIETFIQRLRQNSSIFGLAGLKRATTL-----PVAT 167
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279
++ I L RPLL F K ++ C W ED TN+
Sbjct: 168 NEPNERPIPLFRPLLQFPKSELISTCIANKIQWFEDSTNQ 207
>gi|347757296|ref|YP_004864858.1| tRNA(Ile)-lysidine synthetase [Micavibrio aeruginosavorus ARL-13]
gi|347589814|gb|AEP08856.1| tRNA(Ile)-lysidine synthetase [Micavibrio aeruginosavorus ARL-13]
Length = 346
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 132/263 (50%), Gaps = 29/263 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ +SGGPDSMAL L A + + I AITVDHGLR S +EA V
Sbjct: 35 IAVALSGGPDSMALLHLLA--------RVCPSQTIIH---AITVDHGLRANSADEAKQVG 83
Query: 145 HRVSDM-GIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
VS + + IVR W +P + E+AR RYRL ++ C++ I L +AH+ D
Sbjct: 84 TWVSSLHNVHHHIVR--WEGDKPDSA-IMESARAARYRLLEQFCVERGIENLWVAHNRTD 140
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE F+ RL++ SG+ GLA A Q S S+ ++RPLLD +KDD+
Sbjct: 141 QAETFLFRLAKGSGLDGLA--AIHEQTSSPSG----------SVQILRPLLDVAKDDLTA 188
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVC 322
C N + DP+N++ F R R+R S+ L++ + L R R+ ++H
Sbjct: 189 WCVDQNIPFATDPSNQNTAFARIRLRQSMDVLAAEGLSEKRLATTARRMGRARAALDHFT 248
Query: 323 SNLINEAVTVMDQGYAVIDLEIL 345
+ VTV + G +DL L
Sbjct: 249 DQAWAQVVTVQNDGI-TMDLHAL 270
>gi|373450190|ref|ZP_09542217.1| putative tRNA(Ile)-lysidine synthase (tilS gene) [Wolbachia
pipientis wAlbB]
gi|371932602|emb|CCE77214.1| putative tRNA(Ile)-lysidine synthase (tilS gene) [Wolbachia
pipientis wAlbB]
Length = 430
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 26/262 (9%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H++IA+ VSGG DS+ L L W + +A+TV+HGLR ES++EA+
Sbjct: 17 HNQIAVAVSGGVDSIVLLHLMTNWAKKNK---------LSLPIALTVNHGLRSESQKEAD 67
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
++G + E +W + + +G++Q AR RY L K C + + L +AHH
Sbjct: 68 FAVSYAKELGAK-ESFMLNW-EKKNIKGNIQLQARKARYNLLTKWCKNNNVKYLFVAHHK 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQAE F+LRL R SGV GL+ M + S + Y + RPLL+FS+ ++
Sbjct: 126 NDQAETFLLRLDRGSGVDGLSSMDYKSFLNGVYIF--------------RPLLNFSRSEI 171
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEH 320
+ + W+ED +N + R R L + +E + + +R + H
Sbjct: 172 ERYAKLHQLRWIEDRSNYDLKYRRTLYRNLLKASDNQDVLTERICLTALHMKRAAKALMH 231
Query: 321 VCSNLINEAVTVMDQGYAVIDL 342
++ V V D GY I L
Sbjct: 232 YTHLAFDDCVNVHDFGYIEIKL 253
>gi|73667491|ref|YP_303507.1| cell cycle protein MesJ [Ehrlichia canis str. Jake]
gi|72394632|gb|AAZ68909.1| cell cycle protein MesJ [Ehrlichia canis str. Jake]
Length = 433
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 131/261 (50%), Gaps = 30/261 (11%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGG DSM L L+A + N N + +TV+HGLR+E+K+EA V
Sbjct: 20 AVAVSGGIDSMVLLHLSAQHR----NHNTP--------IILTVNHGLRQEAKQEALFVFQ 67
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
++ ++C I+ +W G+ + ++Q +AR +RY L + C +++I L++AH +DQA
Sbjct: 68 HSQNLNLKCHIL--NW-HGKLPESNIQSSARQIRYGLLLQWCNENRINYLMVAHQKNDQA 124
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E ++RL R SG+ GLAGM + + + I ++RPLL S+ ++ +
Sbjct: 125 ETIMIRLERGSGLDGLAGMQECTYL--------------NGICILRPLLSVSRTELLQYA 170
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCS-FKSELQAVISACRRTRSYVEHVCSN 324
N W+ DP+N + + R R L + + L + +R+ + H
Sbjct: 171 SQNNIPWINDPSNNNKKYKRTLYRNMLETTDNPEILINRLYTASTHIKRSLDCILHYVRE 230
Query: 325 LINEAVTVMDQGYAVIDLEIL 345
I+E + + GY I L++
Sbjct: 231 AIDECLEFTNLGYINIKLDVF 251
>gi|241956978|ref|XP_002421209.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36]
gi|223644552|emb|CAX41370.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36]
Length = 479
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 112/225 (49%), Gaps = 20/225 (8%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
+ G P ++A+ +SGGPDSM L L + +F + AIT+DH R E
Sbjct: 16 LGGTVPK-KVAVALSGGPDSMLLTWLLS------------QCQF--EIYAITIDHKYRTE 60
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDG--RPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
S EA V RV + + I D+ G K + +E AR+ RY +VC + +I
Sbjct: 61 SSREALAVHERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEVAREKRYEAMAQVCYEKEIP 120
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS--ILLVR 251
VL + HH DDQ E FI RL NS + GLAG S + S S L N + + ++R
Sbjct: 121 VLFLGHHRDDQLETFIQRLQGNSSIFGLAGTHKVSPLPISRDLSPESTLFNQASQVRILR 180
Query: 252 PLLDFSKDDMYKICQGGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 295
P D+ K D+ + CQ N +V DPTN+ L RN +R + D+
Sbjct: 181 PFWDYDKQDILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDV 225
>gi|146420868|ref|XP_001486387.1| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC
6260]
Length = 471
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 13/220 (5%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
+ + +++ F +K R+A+ +SGG DSM L L + +K + E
Sbjct: 1 MITIAQFQNCFHACFGATTVKAPRRLAIALSGGVDSMCLAYLLSQYK--------QVYEP 52
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
L +IT+DHG R +S+ EA V+ V + GI + R + K + +E AR MR
Sbjct: 53 SLELHSITIDHGYRSDSEIEAQKVAQVVQNWGILPSVSRLKYSCNPAKISNFEEVARTMR 112
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y F++ C + I LL+AH+ DDQ E FI RL +NS + GLAG+ ++ +
Sbjct: 113 YAEFERFCRGNNIEGLLVAHNLDDQIETFIQRLRQNSSIFGLAGLKRATTL-----PVAT 167
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279
++ I L RPLL F K ++ C W ED TN+
Sbjct: 168 NEPNERPIPLFRPLLQFPKSELISTCIANKIQWFEDSTNQ 207
>gi|242763827|ref|XP_002340652.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500]
gi|218723848|gb|EED23265.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500]
Length = 630
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 121/265 (45%), Gaps = 48/265 (18%)
Query: 66 YREAFSRRMAMAGLKP----HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
+REA++ + P RI + VSGGPDSMAL L + E F+
Sbjct: 22 FREAWTNILPRYQRPPLNHIPRRIGIAVSGGPDSMALAYLCKQLQVTRPELELEMKAFV- 80
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-PKQGHLQEA-ARDMR 179
VDH REES EEA+ VS +S+M I E++ DW G PK+ E AR R
Sbjct: 81 ------VDHKFREESTEEAHKVSSWLSNMDILSEVLTLDWEAGETPKKKMAFETLARTKR 134
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS------- 232
Y+ K C ++Q+ LLI HH DD E +LR++ + + GLAG+A ++I
Sbjct: 135 YQALGKACFKNQLNTLLIGHHLDDNVETGLLRMTPTAKLEGLAGIAPVARIPECHGLWGV 194
Query: 233 --------------SYAYSCHDDLKNH-------------SILLVRPLLDFSKDDMYKIC 265
S+ + + H ILL RPLL F K + + C
Sbjct: 195 SESGSFETIRGRQRSFEFDLDEGKLTHFSADDWSFTMATGGILLCRPLLPFYKASILETC 254
Query: 266 QGGNRDWVEDPTNRSP-LFVRNRIR 289
+ N +V DPTN P L +RN IR
Sbjct: 255 REANVPYVTDPTNSDPTLTMRNTIR 279
>gi|323138991|ref|ZP_08074051.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
gi|322395745|gb|EFX98286.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
Length = 332
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 106/214 (49%), Gaps = 27/214 (12%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
+A L PH + L VSGGPDS+AL +L A W + + TVDHGLR E
Sbjct: 10 LALLAPHRSLLLAVSGGPDSVALMLLAAQWPDRRSHD----------IAVATVDHGLRPE 59
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
++ EA V + +G ++ W +P+ +QE AR RY L + G +
Sbjct: 60 ARREAEQVGAWANALGFPHHVL--TWQGEKPRT-RVQERARTARYALLADCAGRIGAGAI 116
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQAE + RL+R SGV GLAGM S+ + L+RPLL
Sbjct: 117 VTAHHADDQAETILFRLTRGSGVAGLAGMTAESRCG--------------GVALLRPLLG 162
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
K + +IC+ + D+ DP+N + R R+R
Sbjct: 163 LRKAALEEICRRCDHDYFRDPSNIDEHYARARLR 196
>gi|255733074|ref|XP_002551460.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131201|gb|EER30762.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 503
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 108/215 (50%), Gaps = 12/215 (5%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++A+ +SGGPDSM L L K N + + AIT+DH R S EEA V
Sbjct: 23 KVAVALSGGPDSMLLTWLLQNQKRQMKNLD---------IYAITIDHKYRSGSHEEAKKV 73
Query: 144 SHRVSDMGIRCEIVRCDWLDG-RPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ D + I ++ D PK+ + +E AR+ RYR+ ++C + I VL + HH
Sbjct: 74 HQWIKDWDVLHIIKSLEYKDNIDPKKLTNFEEVAREERYRVMSQICFKESIPVLFMGHHR 133
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E FI RL NS + GLAG S + +S S ++ I + RP L+F K D+
Sbjct: 134 DDQLETFIQRLQGNSSIFGLAGTRSVSPVPTSKDLSPNETQDKLQIQIARPFLEFDKKDI 193
Query: 262 YKICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDL 295
+ C +V D TN L RN +R +G++
Sbjct: 194 LETCNANGIHYVTDLTNGDVGLTRRNYLRYLIGEV 228
>gi|374333015|ref|YP_005083199.1| Lysidine-tRNA(Ile) synthetase, N-terminal domain-containing
protein, partial [Pseudovibrio sp. FO-BEG1]
gi|359345803|gb|AEV39177.1| protein containing Lysidine-tRNA(Ile) synthetase, N-terminal domain
[Pseudovibrio sp. FO-BEG1]
Length = 441
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 106/216 (49%), Gaps = 24/216 (11%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
K RIA+GVSGG DSMAL L W E G L A TV+HGLR E+ E
Sbjct: 24 KSFRRIAIGVSGGADSMALLYLLKQWTQ-------ELGFAAPELYAFTVNHGLRAEAASE 76
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ + + + E + W +P ++Q AARD+R+RL ++ H L +AH
Sbjct: 77 AVGVAQYCTRIEVPHETLL--WEGDKPSS-NIQSAARDVRHRLLRRASEDHGCDALFLAH 133
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
H +DQAE F+ RL+R SGV GLA + D + + RPLL+ SK
Sbjct: 134 HLEDQAETFLTRLARGSGVYGLACI--------------RRDREMDGFHICRPLLNISKA 179
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
+ + + W EDP+N F R + R + +L
Sbjct: 180 RLKAVLHSAHVPWFEDPSNEDEQFTRVKFRQAQSEL 215
>gi|83950085|ref|ZP_00958818.1| PP-loop family protein [Roseovarius nubinhibens ISM]
gi|83837984|gb|EAP77280.1| PP-loop family protein [Roseovarius nubinhibens ISM]
Length = 396
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 144/320 (45%), Gaps = 34/320 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DS AL + W G L A+TVDHGLR + EA V+
Sbjct: 1 MAVAVSGGSDSTALLLGLKDWAQGREVS----------LYAVTVDHGLRAAAAHEAEAVA 50
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++ + + DG QG+L +AAR RY L + H I L++ H +DQ
Sbjct: 51 QLCAELALPHHCLEWQGWDG---QGNLSDAARRARYDLMADWALSHDIHDLVLGHTQNDQ 107
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RL+R +G+ GLAGM + ++ L RPLL S++ +
Sbjct: 108 AETLVMRLARGAGLDGLAGMGART--------------ARGAMTLHRPLLGVSRESLRAY 153
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCS 323
+ + W +DP+N P + R R R +L L S + E L V R R+ + HV
Sbjct: 154 LRRRDIGWADDPSNEDPQYARVRTRAALSALESAGVEVEALAKVAGYLREARATIGHVAQ 213
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
E + D G VID + + + + L L+++ P RG+ + LL
Sbjct: 214 E-AAERLVQFDAGDLVIDAQAWGEERRD--IQRRILQAALRWVSGHGYPARGAAVEALLE 270
Query: 384 YIRTFPCKTSLTAAGCYLCP 403
++ + ++T GC P
Sbjct: 271 ALQR---EEAMTLHGCRNIP 287
>gi|99034626|ref|ZP_01314580.1| hypothetical protein Wendoof_01000607, partial [Wolbachia
endosymbiont of Drosophila willistoni TSC#14030-0811.24]
Length = 407
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 28/312 (8%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148
VSGG DS+ L L W + + + + A+TV+HGLR ES++EA+ V
Sbjct: 1 VSGGVDSVVLLHLMTNW--------AKKNKLLLPI-ALTVNHGLRPESQKEADFVVSYAK 51
Query: 149 DMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
++G + + +W + + +G++Q AR RY+L + C + + LL+AHH DDQAE F
Sbjct: 52 ELGAKESFI-LNW-EKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETF 109
Query: 209 ILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGG 268
+LRL R SGV GL+ M + S + + I + RPLL+FS+ ++ K +
Sbjct: 110 LLRLERGSGVDGLSSMDYKSFL--------------NGIYIFRPLLNFSRSEIEKYAKLH 155
Query: 269 NRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCSNLIN 327
W+ED +N + R R L + +E + + +R + H N
Sbjct: 156 RLKWIEDRSNHDLKYRRTLYRNLLKSSDNQEILTERICLTALHMKRAAKALMHYTRLAFN 215
Query: 328 EAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRT 387
+ V V D GY I L E+I L L ++ + +P R S+ + + I
Sbjct: 216 DCVNVHDLGYIEIKLSEFYQLP-EEIALRLLLYSIMAIASKHYKP-RYSSLIAIFNRILQ 273
Query: 388 FPCKTSLTAAGC 399
+ T +GC
Sbjct: 274 KDSNVNCTLSGC 285
>gi|384215969|ref|YP_005607135.1| hypothetical protein BJ6T_22680 [Bradyrhizobium japonicum USDA 6]
gi|354954868|dbj|BAL07547.1| hypothetical protein BJ6T_22680 [Bradyrhizobium japonicum USDA 6]
Length = 391
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 106/213 (49%), Gaps = 25/213 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS+AL L A WK G + + L +TVDHGLR E+ EA V
Sbjct: 27 LVLAVSGGPDSVALMWLAARWKRG-LARGPQ-------LTVVTVDHGLRPEAAREAREVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++G+ +R W +P G L AAR+ RYRL + +L AH DDQ
Sbjct: 79 RLAAELGLVHRTLR--WRGAKPDTG-LPAAAREARYRLLARAARSVGASHVLTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RL R SG+ GL+ MA ++ ++LVRPLLD K +
Sbjct: 136 AETVLMRLLRGSGLAGLSAMARLTE--------------RDGVVLVRPLLDIPKSQLIAT 181
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
+ + +DPTNR F R R+R L L++
Sbjct: 182 LRRAKIGFADDPTNRDTAFTRPRLRALLPQLAA 214
>gi|254473236|ref|ZP_05086634.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062]
gi|211957957|gb|EEA93159.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062]
Length = 441
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 105/216 (48%), Gaps = 24/216 (11%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
K RIA+GVSGG DSMAL L W E G L A TV+HGLR E+ E
Sbjct: 24 KSFRRIAIGVSGGADSMALLYLLKQWTQ-------ELGFAAPKLYAFTVNHGLRAEAASE 76
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ + + + E + W +P ++Q AARD R+RL ++ H L +AH
Sbjct: 77 AVGVAQYCTRIEVPHETLL--WEGDKPSS-NIQSAARDARHRLLRQASEDHGCDALFLAH 133
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
H +DQAE F+ RL+R SGV GLA + D + + RPLL+ SK
Sbjct: 134 HLEDQAETFLTRLARGSGVYGLACI--------------RRDREMDGFHICRPLLNISKA 179
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
+ + + W EDP+N F R + R + +L
Sbjct: 180 RLKAVLHSAHVPWFEDPSNEDEQFTRIKFRQAQSEL 215
>gi|386398091|ref|ZP_10082869.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. WSM1253]
gi|385738717|gb|EIG58913.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. WSM1253]
Length = 351
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 105/223 (47%), Gaps = 29/223 (13%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLRE 134
AGLK + L VSGGPDS+AL L A W G L +T+DHGLR
Sbjct: 19 AGLKGARGLLLAVSGGPDSVALMWLAARWHR----------SLAHGPRLTVVTIDHGLRP 68
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E+ EA V H + +G+ VR W +PK G L AAR+ RYRL +
Sbjct: 69 EAAREAREVKHLATGLGLPHRTVR--WRGAKPKTG-LPAAAREARYRLLVQAARVAGASH 125
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+L AH DDQAE ++RL R SG+ GL+ MA ++ ++L RPLL
Sbjct: 126 VLTAHTRDDQAETLLMRLLRGSGLAGLSAMARLTE--------------RDGVILARPLL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
D K + + + +DPTN F R R+R L L+
Sbjct: 172 DVPKSQLIATLKRAKIGFADDPTNHDAAFTRPRLRALLPQLAG 214
>gi|114570963|ref|YP_757643.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10]
gi|114341425|gb|ABI66705.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10]
Length = 450
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 139/304 (45%), Gaps = 23/304 (7%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R A+ L + + SGG DS+AL V+ + W NG + L +TVDHGL
Sbjct: 10 RSALGRLAGEGPLGIACSGGGDSLALLVIASDWA----RANGRS------LQVLTVDHGL 59
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R+ S +EAN V+ +G C + W D RP G LQ ARD R+RL + C +
Sbjct: 60 RKSSADEANHVAAMADRLGWPCTCL--TWDDARPGAG-LQARARDARHRLLARACRDLGL 116
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
L +AH DDQ+E LRL+ AG ++ S S + + L+RP
Sbjct: 117 TELALAHTRDDQSETVWLRLA--------AGGSWRSAAVMSDRAPSPVWPEGRDLDLLRP 168
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACR 312
LD ++ ++ ++ DWV+DP+N + R R R LG LS F+ + A + A
Sbjct: 169 CLDVTRAELRRVLSDAGIDWVDDPSNEDDRYARVRARGDLGLLSEAGFQPDRFAELGALL 228
Query: 313 RTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKI-EDIFLSKFLALVLQFICQRQR 371
R E + +A V+ + + ++ S+I + L+ ALV+ Q
Sbjct: 229 RPVHAAERRAAWHCGQAALVV-HAWGGVSIDRAAWSRIVPAVRLTLLDALVMAVSGQSVS 287
Query: 372 PVRG 375
P RG
Sbjct: 288 PSRG 291
>gi|154252572|ref|YP_001413396.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1]
gi|154156522|gb|ABS63739.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1]
Length = 443
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 114/222 (51%), Gaps = 28/222 (12%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGW--KTGGFNQNGEAGEFIDGLLAIT 127
FS R+++ LKP +IA+ SGGPDS+AL +L A W K G + L+A T
Sbjct: 20 FSTRLSV--LKPSKKIAIAFSGGPDSLALLILAAEWAKKRRGIS-----------LVAFT 66
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDHGLR S EA + ++G+ ++ W +P +G +Q AARD RY L C
Sbjct: 67 VDHGLRAASAAEAKAAARLSDELGVPHRTLK--WRGVKPAKG-IQAAARDARYALLLAAC 123
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
G LL+AHH +DQAE F+LRL+R SGV GLA M A D+ ++
Sbjct: 124 RSFGAGDLLVAHHLEDQAETFLLRLARGSGVDGLAAM--------PRARPLSDE--EPAV 173
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPL+D + + + DP+N + F R + R
Sbjct: 174 RLLRPLIDLPRSRLLATVARAGLTAIHDPSNENERFDRVKAR 215
>gi|301118040|ref|XP_002906748.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108097|gb|EEY66149.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 740
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 154/347 (44%), Gaps = 41/347 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DSMAL +L + G LLA+TVDH LR S EA V+
Sbjct: 14 IAVAVSGGADSMALMLLLREYLHGN--------RIKTPLLAVTVDHQLRIGSSREALEVA 65
Query: 145 HRVSDMGIRCEIVR-CDWLDG------------------RPKQGHLQEAARDMRYRLFQK 185
++ G + + C+W G +P+ ++E AR RY L ++
Sbjct: 66 KICAERGGITHVTKVCEWHLGDTEKHSGGEQQSDLLRPVKPRDSKIEEQARQYRYNLLRR 125
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA-----FSSQIFSSYAYSCHD 240
VC+++ + L +AH+ DQ E + RL R SG+ GLAG+A S + ++
Sbjct: 126 VCLEYGVRCLFVAHNLGDQLETTLFRLGRASGINGLAGIANQLPFLSLEGLPDRSFHGKG 185
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS--- 297
++S L+RPLL +KD++ C + W+ DP+N ++ R RIR L +
Sbjct: 186 LDSDYSATLLRPLLSVTKDELMATCDRFQQTWIHDPSNDDLMYDRVRIRQELKRVKREQG 245
Query: 298 ---CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIF 354
+ Q ++ + +E ++ + V+ L + + + +
Sbjct: 246 AEVLDLFARFQVSSDKAKKEFALIERA---MLRKYTVTWGPDLVVLRLAVFHDPNMFEEL 302
Query: 355 LSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYL 401
L + L++++ I ++ P R ++ L+ ++ +T GC +
Sbjct: 303 LYRLLSIIIVHIGTKETPPRLASVVRLVRDLQRLESGKQITLGGCRI 349
>gi|337740064|ref|YP_004631792.1| tRNA(Ile)-lysidine synthase TilS [Oligotropha carboxidovorans OM5]
gi|386029081|ref|YP_005949856.1| tRNA(Ile)-lysidine synthase TilS [Oligotropha carboxidovorans OM4]
gi|336094149|gb|AEI01975.1| tRNA(Ile)-lysidine synthase TilS [Oligotropha carboxidovorans OM4]
gi|336097728|gb|AEI05551.1| tRNA(Ile)-lysidine synthase TilS [Oligotropha carboxidovorans OM5]
Length = 341
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 109/225 (48%), Gaps = 25/225 (11%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R AG K + L VSGGPDS+AL L A W+ + + LLA+TVDHGL
Sbjct: 20 RQLFAGWKNLPALVLAVSGGPDSVALLWLAARWRRS-LKKGPD-------LLAVTVDHGL 71
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R + EA V S +GI + W +PK G + EAAR+ RY L +
Sbjct: 72 RAAAAHEAREVKRLASALGIAHRTL--TWRGTKPKTG-VPEAAREARYELLARAARSASA 128
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
+ AH DDQAE ++RL+R SG+ GLAGMA S+ H + L+RP
Sbjct: 129 VAIATAHTQDDQAETILMRLTRGSGLTGLAGMAAQSE--------------RHGVALLRP 174
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
LLD K + + DPTN P + R+R+R + L+S
Sbjct: 175 LLDVPKARLVATLNRAKIAYANDPTNHDPAYTRSRLRAMMPVLAS 219
>gi|209886399|ref|YP_002290256.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5]
gi|209874595|gb|ACI94391.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5]
Length = 338
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 109/225 (48%), Gaps = 25/225 (11%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R AG K + L VSGGPDS+AL L A W+ + + LLA+TVDHGL
Sbjct: 17 RQLFAGWKNLPALVLAVSGGPDSVALLWLAARWRRS-LKKGPD-------LLAVTVDHGL 68
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R + EA V S +GI + W +PK G + EAAR+ RY L +
Sbjct: 69 RAAAAHEAREVKRLASALGIAHRTL--TWRGTKPKTG-VPEAAREARYELLARAARSASA 125
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
+ AH DDQAE ++RL+R SG+ GLAGMA S+ H + L+RP
Sbjct: 126 VAIATAHTQDDQAETILMRLTRGSGLTGLAGMAAQSE--------------RHGVALLRP 171
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
LLD K + + DPTN P + R+R+R + L+S
Sbjct: 172 LLDVPKARLVATLNRAKIAYANDPTNHDPAYTRSRLRAMMPVLAS 216
>gi|58584411|ref|YP_197984.1| ATPase [Wolbachia endosymbiont strain TRS of Brugia malayi]
gi|75498061|sp|Q5GTD2.1|TILS_WOLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|58418727|gb|AAW70742.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control, MesJ [Wolbachia endosymbiont strain TRS
of Brugia malayi]
Length = 431
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 124/262 (47%), Gaps = 26/262 (9%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++++A+ VSGG DS+ L L W E + +A+ V+HGLR ES+EE
Sbjct: 18 NNKVAVAVSGGIDSIVLLHLITSW--------AEKRQ-CPPPIALAVNHGLRPESQEEVE 68
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G++ + +W K G++Q AR RY L + C + + L IAHH
Sbjct: 69 FVVSYAKELGVKKSFI-LNWKRQNIK-GNVQSQARKARYELLTEWCKNNDVKHLFIAHHK 126
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE F+LRL R SG+ GL+ M + S + + + ++RPLL FS+ +
Sbjct: 127 DDQAETFLLRLERGSGLDGLSSMDYKSSL--------------NGVCMLRPLLSFSRSRI 172
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEH 320
K WVED +N+S + R R L + +E + + +R + H
Sbjct: 173 KKYADFYRLKWVEDRSNQSLKYKRTLYRNLLKASGNQEILTERICLTTLHIKRATKALMH 232
Query: 321 VCSNLINEAVTVMDQGYAVIDL 342
N+ V V D GY I L
Sbjct: 233 YTRLAFNDCVNVHDLGYIEIKL 254
>gi|157825192|ref|YP_001492912.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford]
gi|166988063|sp|A8GLX9.1|TILS_RICAH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|157799150|gb|ABV74404.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford]
Length = 430
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 127/262 (48%), Gaps = 34/262 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L I+VDH LRE+SK+E V
Sbjct: 21 KIAVAVSGGSDSVALLYLANIWAEKN---NIE-------LSVISVDHNLREQSKQETYYV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERARAGRYDLMTNLCLEFDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL---QAVISACRRTRSYVEH 320
N W ED +N S + RN IR L + K+E+ Q I+ + E
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNIIRQKLAK-GAGYIKAEIILQQLKINDLLDNKFKPEL 231
Query: 321 VCSNLINEAVTVMDQGYAVIDL 342
+ + I EAV + + G+A +DL
Sbjct: 232 ISA--IAEAVKIFEYGFAFLDL 251
>gi|365881468|ref|ZP_09420778.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 375]
gi|365290383|emb|CCD93309.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 375]
Length = 363
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 109/208 (52%), Gaps = 25/208 (12%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGGPDSMAL L A W+ G NG L+AIT+DHGLR E++ EA +V H
Sbjct: 41 SGGPDSMALLWLAARWRRG--RSNGPR------LVAITLDHGLRSEARREAQMVKHIARQ 92
Query: 150 MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209
+ + VR W D +P G + EAAR RYRL + Q +L AH DDQAE +
Sbjct: 93 LDVPHRTVR--WTDAKPATG-IPEAARLARYRLLARAARQAGASHVLTAHTRDDQAETVL 149
Query: 210 LRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269
+RL R SG++GLA MA S +LL RPLL+ SK + + +
Sbjct: 150 MRLLRGSGIVGLAAMAPVS--------------AREGLLLARPLLELSKARLVATLRSAD 195
Query: 270 RDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
+ +DPTNR P + R R+R + L++
Sbjct: 196 IPFADDPTNRDPAYTRPRLRALMPALAA 223
>gi|374577670|ref|ZP_09650766.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. WSM471]
gi|374425991|gb|EHR05524.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. WSM471]
Length = 349
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 114/238 (47%), Gaps = 28/238 (11%)
Query: 63 MTKYREAFSRRMA---MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
M+K S R A AGLK + L VSGGPDS+AL L A W +++ G
Sbjct: 1 MSKDNSPISAREAKRLFAGLKGAQGLLLAVSGGPDSVALMWLAARW-----HRSLARGPR 55
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
L +T+DHGLR E+ EA V + +G+ VR W +PK G L AAR+ R
Sbjct: 56 ---LTVVTIDHGLRPEAAREAREVKRLATGLGLPHRTVR--WRGAKPKTG-LPAAAREAR 109
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
YRL + +L AH DDQAE ++RL R SG+ GL+ MA ++
Sbjct: 110 YRLLVQAARVAGASHVLTAHTRDDQAETLLMRLVRGSGLAGLSAMARLTE---------- 159
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
++L RPLLD K + + + +DPTN F R R+R L L++
Sbjct: 160 ----RDGVVLARPLLDVPKSQLIATLKRAKIGFADDPTNHDAAFTRPRLRALLPQLAA 213
>gi|381165856|ref|ZP_09875083.1| tRNA(Ile)-lysidine synthase [Phaeospirillum molischianum DSM 120]
gi|380685346|emb|CCG39895.1| tRNA(Ile)-lysidine synthase [Phaeospirillum molischianum DSM 120]
Length = 466
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 149/331 (45%), Gaps = 33/331 (9%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
+ + +P R+A+ VSGG DS+AL +L W + G A + +TVDH LR
Sbjct: 16 LPLGPFEPRPRLAVAVSGGADSLALTLLADKWAR---MRGGHA-------VGLTVDHRLR 65
Query: 134 EESKEEANIVSHRVSDMGI-RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
++ EAN V ++ GI +VR +G +Q AR R+ L + C + I
Sbjct: 66 PDAAAEANRVGQWLAVHGIDHVILVR----EGERPTADIQAVARKARHDLLGRYCAEAGI 121
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
LL+AHH +DQAE +LRL R SGV GLA MA ++RP
Sbjct: 122 LHLLLAHHREDQAETLLLRLGRGSGVDGLAAMATRRPTRWGQ--------------ILRP 167
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS-CSFKSELQAVISAC 311
LLD + + +DWVEDP+N P++ R R R L++ + L A +
Sbjct: 168 LLDTPRARLRSTLVERGQDWVEDPSNADPVYARVRFRQLAPVLAAEGLASARLAATAARL 227
Query: 312 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQR 371
R R+ +EH + + G+A + + + E+I L + LA +L +
Sbjct: 228 GRVRATLEHDVARAAARLIVPHPAGFARLAANGFS-ALSEEIAL-RVLARLLSLVGGEPL 285
Query: 372 PVRGSTSKLLLHYIRTFPCKTSLTAAGCYLC 402
P R + L H + T LT AGC +
Sbjct: 286 PPRHERLERLAHALAAG-SMTGLTLAGCRIV 315
>gi|406601758|emb|CCH46629.1| tRNA(Ile)-lysidine synthase [Wickerhamomyces ciferrii]
Length = 456
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 122/271 (45%), Gaps = 25/271 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ +SGG DSM L L N+ + + I++DHGLR+ES E +
Sbjct: 21 KIAVSLSGGVDSMCLIHL--------LNKVNQLENLNISIYPISMDHGLRKESSNELKFI 72
Query: 144 SHRVSDMGIRCEIVRCDWLD--------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
H + +G+ C LD ++ AR RY ++C QI +
Sbjct: 73 HHEMEKLGLDSNFQSCK-LDLSSLYTSNTDSTSISFEKLARIKRYDKLHEICNHLQIQNI 131
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
HHADD E F+LRL NSG GL G++ S+ S + + LK L+RPLL
Sbjct: 132 FTGHHADDNLETFVLRLLNNSGEFGLRGISKISNAPLLSKPFISFNQLK-----LIRPLL 186
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCS--FKSELQAVISACR 312
DF+K ++YK N +WVED TN + RN IR L + S + VI+
Sbjct: 187 DFNKFEIYKYANEQNTNWVEDYTNNEMIAKRNIIRKYLKENKETSKVLQETQHEVINLTN 246
Query: 313 RTRSYVEHVCSNLINEAVTVMDQGYAVIDLE 343
+ V ++ L N+ + I+L+
Sbjct: 247 QIEIKVNNLYHKLQNQGTITQNLNSLNIELD 277
>gi|57239569|ref|YP_180705.1| hypothetical protein Erum8420 [Ehrlichia ruminantium str.
Welgevonden]
gi|58579557|ref|YP_197769.1| hypothetical protein ERWE_CDS_08930 [Ehrlichia ruminantium str.
Welgevonden]
gi|57161648|emb|CAH58577.1| conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
gi|58418183|emb|CAI27387.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
Length = 442
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 30/262 (11%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H A+ VSGG DSM L L+A T +F +L TV+HGLR E+ +EA
Sbjct: 23 HDNYAIAVSGGIDSMVLLHLSAICNT----------KFTPTIL--TVNHGLRSEAAQEAL 70
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++ ++C I+ +W +P Q ++Q +AR +RY L + C Q+QI L++AH
Sbjct: 71 FVYQHSQNLNLKCHIL--NWHGEKP-QSNIQSSARQIRYSLLLQWCNQNQINYLMVAHQK 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQAE ++RL R SG+ GLAGM + + + I ++RPLL S++++
Sbjct: 128 NDQAETIMMRLERGSGLDGLAGMQECTYL--------------NGICILRPLLAISREEL 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSC-SFKSELQAVISACRRTRSYVEH 320
N WV D +N + + R R L ++ + + L +R+ + H
Sbjct: 174 IHYADTKNITWVHDISNDNKKYKRTLYRNILKEVDNTEELVNRLYKTSVHIKRSLDCILH 233
Query: 321 VCSNLINEAVTVMDQGYAVIDL 342
I+E + + G+ I L
Sbjct: 234 YVRLAIDEHLEFNNLGFIKIKL 255
>gi|383501010|ref|YP_005414369.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia australis str.
Cutlack]
gi|378932021|gb|AFC70526.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia australis str.
Cutlack]
Length = 430
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 125/277 (45%), Gaps = 64/277 (23%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L I+VDH LR +SK+E +
Sbjct: 21 KIAVAVSGGSDSVALLYLANIWAEKN---NIE-------LSVISVDHNLRAQSKQETYYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHHADD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLEFDILVLLTAHHADD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR------------------MSLGDLSSCSFKSELQ 305
N W ED +N S + RN IR + + DL FK EL
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNIIRQKLAKGVGYIKAEIILQQLKINDLLDNKFKPELI 232
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDL 342
+ I+ EAV + + G+A +DL
Sbjct: 233 SAIA------------------EAVKIFEYGFAFLDL 251
>gi|238882936|gb|EEQ46574.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 483
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 105/217 (48%), Gaps = 19/217 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++A+ +SGGPDSM L L + K + AIT+DH R E+ EA V
Sbjct: 23 KVAVALSGGPDSMLLTWLLSQCKFE--------------IYAITIDHKYRPEASREALSV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDG--RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
RV + + I D+ G K + +E AR+ RY +VC I VL + HH
Sbjct: 69 YERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEIAREKRYEAMAQVCYDKDIPVLFLGHHR 128
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS--ILLVRPLLDFSKD 259
DDQ E FI RL NS + GLAG S + S S N + + ++RP D+ K
Sbjct: 129 DDQLETFIQRLQGNSSIFGLAGTHKVSPLPISKDLSPTSTFFNQANQVRILRPFWDYDKQ 188
Query: 260 DMYKICQGGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 295
D+ + CQ N +V DPTN+ L RN +R + D+
Sbjct: 189 DILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDI 225
>gi|58617611|ref|YP_196810.1| hypothetical protein ERGA_CDS_08840 [Ehrlichia ruminantium str.
Gardel]
gi|58417223|emb|CAI28336.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
Length = 442
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 30/262 (11%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H A+ VSGG DSM L L+A T +F +L TV+HGLR E+ +EA
Sbjct: 23 HDNYAIAVSGGIDSMVLLHLSAICNT----------KFTPTIL--TVNHGLRSEAAQEAL 70
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++ ++C I+ +W +P Q ++Q +AR +RY L + C Q+Q+ L++AH
Sbjct: 71 FVYQHSQNLNLKCHIL--NWHGEKP-QSNIQSSARQIRYSLLLQWCNQNQVNYLMVAHQK 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQAE ++RL R SG+ GLAGM + + + I ++RPLL S++++
Sbjct: 128 NDQAETIMMRLERGSGLDGLAGMQECTYL--------------NGICILRPLLAISREEL 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSC-SFKSELQAVISACRRTRSYVEH 320
N WV D +N + + R R L ++ + + L +R+ + H
Sbjct: 174 IHYADTKNITWVHDISNDNKKYKRTLYRNILKEVDNTEELVNRLYKTSVHIKRSLDCILH 233
Query: 321 VCSNLINEAVTVMDQGYAVIDL 342
I+E + + G+ I L
Sbjct: 234 YVRLAIDEHLEFNNLGFIKIKL 255
>gi|67458532|ref|YP_246156.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2]
gi|75537001|sp|Q4UN67.1|TILS_RICFE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|67004065|gb|AAY60991.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2]
Length = 430
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 125/277 (45%), Gaps = 64/277 (23%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KIAAAVSGGSDSVALLYLANIWAEKN---NIE-------LSVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR------------------MSLGDLSSCSFKSELQ 305
N W ED +N S + RN IR + + DL FK EL
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNIIRQKLAKGEDYIKADIILQQLKINDLLDNKFKPELI 232
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDL 342
+ I+ EAV + + G+A +DL
Sbjct: 233 SAIA------------------EAVKIFEYGFAFLDL 251
>gi|68487427|ref|XP_712412.1| hypothetical protein CaO19.2137 [Candida albicans SC5314]
gi|68487717|ref|XP_712269.1| hypothetical protein CaO19.9684 [Candida albicans SC5314]
gi|46433643|gb|EAK93076.1| hypothetical protein CaO19.9684 [Candida albicans SC5314]
gi|46433797|gb|EAK93226.1| hypothetical protein CaO19.2137 [Candida albicans SC5314]
Length = 483
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++A+ +SGGPDSM L + K + AIT+DH R ES EA V
Sbjct: 23 KVAVALSGGPDSMLLTWFLSQCKFE--------------IYAITIDHKYRPESSREALSV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDG--RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
RV + + I D+ G K + +E AR RY +VC I VL + HH
Sbjct: 69 YERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEIARGKRYEAMAQVCYDKDIPVLFLGHHR 128
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS--ILLVRPLLDFSKD 259
DDQ E FI RL NS + GLAG S + S S L N + + ++RP D+ K
Sbjct: 129 DDQLETFIQRLQGNSSIFGLAGTHKVSPLPISKDLSPTSALFNQTSQVRILRPFWDYDKQ 188
Query: 260 DMYKICQGGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 295
D+ + CQ N +V DPTN+ L RN +R + D+
Sbjct: 189 DILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDI 225
>gi|354559288|ref|ZP_08978538.1| tRNA(Ile)-lysidine synthase [Desulfitobacterium metallireducens DSM
15288]
gi|353542877|gb|EHC12337.1| tRNA(Ile)-lysidine synthase [Desulfitobacterium metallireducens DSM
15288]
Length = 477
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ PH RI + VSGGPDSMAL + W+ ++ E G L+ V HGLR+ES E
Sbjct: 15 IPPHSRILVAVSGGPDSMALSHVL--WRY--VHEMSEQG---ISLVLTHVHHGLRQESDE 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA +V + C + R D G + AAR+ RY + + I+++ +L
Sbjct: 68 EAVMVKEMAKRWEVPCVVHRFDAQAYAQATGQSFETAAREWRYARWNEDMIEYKCDLLAT 127
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHH DQAE + RL R SG GLAG+ Y ++RP L+F
Sbjct: 128 AHHLGDQAETVLYRLLRGSGTAGLAGI---------YPRKGK---------IIRPFLNFK 169
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
K+D+ CQ + + D TN PLFVRNRIR+ L
Sbjct: 170 KEDVLDYCQREHIPYAVDYTNFQPLFVRNRIRLEL 204
>gi|354543020|emb|CCE39738.1| hypothetical protein CPAR2_601580 [Candida parapsilosis]
Length = 509
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 103/211 (48%), Gaps = 8/211 (3%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+G+SGGPDSM L L +K + + E + AIT+DH R S EA +
Sbjct: 25 KIAVGLSGGPDSMLLVWLLQKYKAYMPHNDLE-------IHAITIDHNYRSNSDIEAKQI 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
S ++ + I + + + +E AR RY + VC I +++ HH DD
Sbjct: 78 SQWMNQWNVNHIIHKLQYSVDPTTIANFEEVARTKRYEAIRSVCNTLGISTVVLGHHCDD 137
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E F+ RL NS + GLA S I S S + + S++LVRPLL F K +
Sbjct: 138 QVETFVQRLQGNSSIFGLACTRRFSNIPLSRDLSPSEQTNSASVMLVRPLLGFEKKAILS 197
Query: 264 ICQGGNRDWVEDPTNR-SPLFVRNRIRMSLG 293
CQ N +V DPTN + L RN +R G
Sbjct: 198 TCQSNNIPYVVDPTNNDTKLTRRNYLRYLFG 228
>gi|149202855|ref|ZP_01879826.1| Probable cell cycle protein [Roseovarius sp. TM1035]
gi|149143401|gb|EDM31437.1| Probable cell cycle protein [Roseovarius sp. TM1035]
Length = 418
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 143/323 (44%), Gaps = 38/323 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGG DS+AL L GW G A+TVDHGLR S +EA V
Sbjct: 23 RLGVAVSGGSDSLALLHLLHGWSLVGGPTPA----------AVTVDHGLRPTSAQEAVDV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + I + VR DG G+L + AR RY L + + + I H DD
Sbjct: 73 AQICARLAIPHDTVRWQGWDG---SGNLPDHARRARYALLTDWARANDLHDIAIGHTQDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
AE F++RL+R +GV GLA M ++ + H RPLLD S++ +
Sbjct: 130 VAETFLMRLARGAGVDGLAAM---RPRWTQSGVTFH-----------RPLLDLSREALRD 175
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
+ + W++DPTN ++R R R SL L+ + A ++ RT S V
Sbjct: 176 HLRRLGQSWIDDPTNDDTTYLRPRARQSLMALAPMGLGA---ATLADVARTLSGVRTALD 232
Query: 324 NLINEAVTVMDQ---GYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
+ A + Q G +ID N + + + + +LQ++ + P RG+
Sbjct: 233 HATLTAARALLQVQSGDILIDHPGFN--DLPEEIARRLMQAMLQWLAGEEYPPRGTA--- 287
Query: 381 LLHYIRTFPCKTSLTAAGCYLCP 403
L +I+ ++ GC L P
Sbjct: 288 LASFIKAARDGHTMPLHGCLLLP 310
>gi|317150446|ref|XP_001824029.2| hypothetical protein AOR_1_526094 [Aspergillus oryzae RIB40]
Length = 1612
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 108/238 (45%), Gaps = 35/238 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ L VSGG DSMAL L+ W+ N + A VDH REES EAN V
Sbjct: 1036 RLGLAVSGGADSMALAYLSKQWEKSRPNDIS--------VTAFVVDHKAREESTREANTV 1087
Query: 144 SHRVSDMGIRCEIVRCDWLDGRP---KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
S + D+G++ EI+ W + K + AR +R++ K C QI LL+ HH
Sbjct: 1088 SQWLQDIGVKSEILELTWPESTKSPSKVTAFETHARRLRFQALGKACRDRQIEALLMGHH 1147
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQI------------FSSY----------AYSC 238
DD E + RL + GLAG+ ++I SSY A +
Sbjct: 1148 QDDTVETTLWRLCTGAKGAGLAGIPEVTRIPECHGIYGVSESGSSYTIPSRPQRSSAQAR 1207
Query: 239 HD-DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGD 294
+D + IL+ RPLL F K + C N +V DPTN P L RN IR L +
Sbjct: 1208 NDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSDPTNFDPTLTPRNAIRSLLAE 1265
>gi|71062418|gb|AAZ21421.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062]
Length = 297
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 144/278 (51%), Gaps = 25/278 (8%)
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDH LR ES +EA +V + +GI C+++ W +P + ++Q AR+ RY L K C
Sbjct: 21 VDHRLRNESTKEATLVKKILQKIGITCKVL--IWKGKKPSR-NIQSLAREARYSLLSKEC 77
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
++ I LL+ HH++D E F++R+ R SG+ GL S + K+ +
Sbjct: 78 KKNNIKYLLLGHHSNDLVENFLIRVVRGSGLNGLVSFNKSVK------------YKDEDL 125
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK-SELQA 306
++RPLL+ K+D+ I + + +++DP+N + ++ R RIR L L+ +L+
Sbjct: 126 NILRPLLNLEKNDLINISKIVFKFFIKDPSNINEIYKRTRIRTLLEFLAKEGLDLKKLKL 185
Query: 307 VISACRRTRSYVE-HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQF 365
I R + ++ +V NL + + + + ++ + S E +F S L V+Q
Sbjct: 186 TIDNLRDSDKSIKFYVNKNLKDNSTHIKTKDTYILSHNFFDQSH-EVVFRS--LTFVIQK 242
Query: 366 ICQRQRPVRGSTSKLLLHYI--RTFPCKTSLTAAGCYL 401
I ++ PVRG + L++ I +TF + +T GC++
Sbjct: 243 IGKKYYPVRGKSINELINRIILKTF---SKITLGGCFV 277
>gi|312115987|ref|YP_004013583.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100]
gi|311221116|gb|ADP72484.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100]
Length = 484
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 143/323 (44%), Gaps = 28/323 (8%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R A A ++ + L VSGGPDSMAL L W T Q + TVDHGL
Sbjct: 44 RKAFASVEASPALVLAVSGGPDSMALMHLARRWATLASRQAAT-------ITVATVDHGL 96
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R ES EEA V +G E V W +P G A R L + +
Sbjct: 97 RPESAEEATFVKAHARALGF--EHVTLVWSGEKPSAGLQAAARRARYALLTAQARVNG-- 152
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
LL AH DDQAE I+RLSR SGV GL+ +A S D ++ LVRP
Sbjct: 153 ASLLTAHTRDDQAETLIMRLSRGSGVDGLSAIA---------PVSGRDGVR-----LVRP 198
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISAC 311
LL FSK + + + +V DP+N + F R R+R+++ L++ K+ L +
Sbjct: 199 LLGFSKTRLTAYLRARHVPFVRDPSNENTAFERVRLRLAMKALANAGVSKAALALSAARL 258
Query: 312 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQR 371
R+R+ ++ ++ V + ID E + + D + LA VL + R
Sbjct: 259 GRSRAALDEAAERFLDGFFRVSPLAHGEIDREAFD--ALPDEIALRVLARVLPLVGGRAE 316
Query: 372 PVRGSTSKLLLHYIRTFPCKTSL 394
P R + LL +R+ + +L
Sbjct: 317 PPRMMRLERLLENLRSRNSEATL 339
>gi|407784263|ref|ZP_11131440.1| tRNA(Ile)-lysidine synthetase, TilS [Oceanibaculum indicum P24]
gi|407197450|gb|EKE67510.1| tRNA(Ile)-lysidine synthetase, TilS [Oceanibaculum indicum P24]
Length = 386
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 104/203 (51%), Gaps = 27/203 (13%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
+ G +P R+A+ VSGG DS+AL +L W + G A + +TVDHGLR +
Sbjct: 17 LGGFEPSPRLAIAVSGGADSLALTLLADLWAR---RRGGRA-------IGLTVDHGLRPD 66
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
S EA V+ ++ I + W +P+ G LQ AAR+ RYRL + C I L
Sbjct: 67 SAAEARQVAGWLAARNIPHHTL--AWQGEKPRIG-LQAAAREARYRLLEDFCAAKGILHL 123
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
L+AHHA DQAE LRL SG GLAGMA S + + C L+RPLL
Sbjct: 124 LLAHHAGDQAETLALRLDAGSGPTGLAGMA--SIVERPF---CR---------LLRPLLT 169
Query: 256 FSKDDMYKICQGGNRDWVEDPTN 278
S ++ Q + W+EDP+N
Sbjct: 170 VSGQELRAYLQQVGQGWIEDPSN 192
>gi|345570748|gb|EGX53569.1| hypothetical protein AOL_s00006g435 [Arthrobotrys oligospora ATCC
24927]
Length = 619
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 108/212 (50%), Gaps = 15/212 (7%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I + VSGG DSMAL L K F + +F A+ VDHGLR+ES +EA V
Sbjct: 46 QIGIAVSGGIDSMALAHLAH--KLSSFKNEFQVTDF----RAMIVDHGLRKESTKEAESV 99
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+V MG+ ++ + HL + AR RYRLF + C Q+ I L+ HHA
Sbjct: 100 VEQVERMGLHASLLTIP-ISAFSSCSHLKVEGTARIERYRLFARTCQQYGISHLITGHHA 158
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQAE ++RL SG GLAG++ +++ C D I+++RP L K+ +
Sbjct: 159 NDQAETVLMRLVGGSGTAGLAGISPVAKL-----PECEDIYGADDIVVLRPFLGVFKNQL 213
Query: 262 YKICQGGNRDWVEDPTNRS-PLFVRNRIRMSL 292
K W EDPTN++ L RN IR L
Sbjct: 214 RKTLTTEKISWHEDPTNKNVGLTPRNAIRALL 245
>gi|379713106|ref|YP_005301444.1| tRNA(Ile)-lysidine synthase [Rickettsia massiliae str. AZT80]
gi|376333752|gb|AFB30984.1| tRNA(Ile)-lysidine synthase [Rickettsia massiliae str. AZT80]
Length = 477
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 168/410 (40%), Gaps = 82/410 (20%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD-------LSSCSFKSELQ----------- 305
N W ED +N S + RN IR L LS +++ E +
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNVIRQKLAKGADYIRHLSKPAYREEFKGDTERNTAAYT 232
Query: 306 -------------------------AVISACRRTRSYVEHVCS----NLINEAVTVMDQG 336
A+IS +T +E+ + I EAV + + G
Sbjct: 233 SVGEEALLRGSILSLEAKFGTMSKAAIISQQLKTNKLIENELKPELISAIAEAVKIFEYG 292
Query: 337 YAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTA 396
+A +DL + K + + + +L I + R R + + +L I T T
Sbjct: 293 FAFLDL--VKFDKFSNEVKVQIINFLLIIISGQSRAARFYSVEPILKLI-TQDVNFKNTL 349
Query: 397 AGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDVEQ 446
GC + + L+ LP L + R C+T ++
Sbjct: 350 HGCIIKRIQN----ELLIYREFGKKLPESKILLDKSVIWDNRFCITKNQE 395
>gi|379018568|ref|YP_005294802.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hlp#2]
gi|376331148|gb|AFB28382.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hlp#2]
Length = 478
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIHIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|383481008|ref|YP_005389923.1| tRNA(Ile)-lysidine synthase [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933347|gb|AFC71850.1| tRNA(Ile)-lysidine synthase [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 477
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 111/410 (27%), Positives = 169/410 (41%), Gaps = 90/410 (21%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD-------LSSCSFKSELQ----------- 305
N W ED +N S + RN IR L LS +++ E +
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNVIRQKLAKGADYIRHLSKPAYREEFKGDTERSTAAYT 232
Query: 306 -------------------------AVISACRRTRSYVEHVCS----NLINEAVTVMDQG 336
A+IS +T +E+ + I EAV + + G
Sbjct: 233 SVGEDALLRGSILSLEAKFGTMSKAAIISQQLKTNKLIENELKPELISAIAEAVKIFEYG 292
Query: 337 YAVIDL----EILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKT 392
+A +DL + N KI+ I FL ++ I + R R + + +L I T
Sbjct: 293 FAFLDLVKFDKFSNEVKIQII---NFLLII---ISGQSRAARFYSVEPILKLI-TQDVNF 345
Query: 393 SLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVT 442
T GC + + L+ LP L + R C+T
Sbjct: 346 KNTLHGCIIKRIQN----ELLIYREFGKKLPESKILLDKSVIWDNRFCIT 391
>gi|157827938|ref|YP_001494180.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith']
gi|165932627|ref|YP_001649416.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa]
gi|378720737|ref|YP_005285624.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Colombia]
gi|378722088|ref|YP_005286974.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Arizona]
gi|378723447|ref|YP_005288331.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hauke]
gi|379017001|ref|YP_005293236.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Brazil]
gi|379017237|ref|YP_005293471.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hino]
gi|379711806|ref|YP_005300145.1| tRNA(Ile)-lysidine synthase [Rickettsia philipii str. 364D]
gi|166988066|sp|A8GQJ7.1|TILS_RICRS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|189035969|sp|B0BVY4.1|TILS_RICRO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|157800419|gb|ABV75672.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith']
gi|165907714|gb|ABY72010.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa]
gi|376325525|gb|AFB22765.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Brazil]
gi|376325761|gb|AFB23000.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Colombia]
gi|376327112|gb|AFB24350.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Arizona]
gi|376328451|gb|AFB25688.1| tRNA(Ile)-lysidine synthase [Rickettsia philipii str. 364D]
gi|376329802|gb|AFB27038.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hino]
gi|376332462|gb|AFB29695.1| tRNA(Ile)-lysidine synthase [Rickettsia rickettsii str. Hauke]
Length = 478
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIHIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|15603921|ref|NP_220436.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Madrid
E]
gi|383486897|ref|YP_005404577.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. GvV257]
gi|383487471|ref|YP_005405150.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
Chernikova]
gi|383488317|ref|YP_005405995.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
Katsinyian]
gi|383489161|ref|YP_005406838.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Dachau]
gi|383499295|ref|YP_005412656.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500136|ref|YP_005413496.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. RpGvF24]
gi|386081874|ref|YP_005998451.1| tRNA(Ile)-lysidine synthetase [Rickettsia prowazekii str. Rp22]
gi|6226316|sp|Q9ZEA3.1|TILS_RICPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|3860612|emb|CAA14513.1| CELL CYCLE PROTEIN MESJ (mesJ) [Rickettsia prowazekii str. Madrid
E]
gi|292571638|gb|ADE29553.1| tRNA(Ile)-lysidine synthetase [Rickettsia prowazekii str. Rp22]
gi|380757262|gb|AFE52499.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. GvV257]
gi|380757833|gb|AFE53069.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. RpGvF24]
gi|380760350|gb|AFE48872.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
Chernikova]
gi|380761196|gb|AFE49717.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
Katsinyian]
gi|380762041|gb|AFE50561.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380762884|gb|AFE51403.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Dachau]
Length = 430
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 139/290 (47%), Gaps = 48/290 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS++L L W N E L I+VDH LR +SK+E +
Sbjct: 21 KIAIAVSGGSDSISLLYLANIWARKN---NIE-------LFVISVDHNLRPQSKQENYYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
S++ + + D + +LQE AR+ RY L +C++ + VLL AHH DD
Sbjct: 71 HTISSNLNRKYYNLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDVLVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL+ SS I + Y+ +I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGLS----SSNI---HWYN--------NIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE--LQAVISACR-RTRSYVEH 320
W ED +N S + RN IR L FK E ++A IS + +T +E
Sbjct: 173 YLVNHKIKWFEDESNLSDKYRRNIIRQKL-------FKEENYIKAEISLQQLKTNKLIED 225
Query: 321 ----VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFI 366
+ I EAV + + G+ +DL D FL++ A ++ F+
Sbjct: 226 ELKPALISAIAEAVKIFEYGFTFLDLVKF------DKFLNEVKAQIINFL 269
>gi|94496969|ref|ZP_01303543.1| ATPase [Sphingomonas sp. SKA58]
gi|94423645|gb|EAT08672.1| ATPase [Sphingomonas sp. SKA58]
Length = 314
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 110/236 (46%), Gaps = 42/236 (17%)
Query: 63 MTKYREAFSRRM-----AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAG 117
+T AF R+ A+ G P R + VSGGPDSMAL L A
Sbjct: 3 LTGDSAAFQTRLVDATSALVGDDPAIRFGIAVSGGPDSMALLCLAAS------------- 49
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
F + A+TVDHGLR ES +EA +V+ GI + D G++Q AR
Sbjct: 50 AFPGRVAAVTVDHGLRRESADEAALVARWCVAHGIEHVTLPAD----ATVTGNVQAWART 105
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAY 236
RYRL + H I ++ AHHADDQ E ++RL+R SG+ GLAG+ A S ++
Sbjct: 106 TRYRLMEAWRASHAIDWIMTAHHADDQLETLVMRLNRGSGIGGLAGVRAVSGRV------ 159
Query: 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+RPLL K + +V+DP+NR F R +RM+L
Sbjct: 160 -------------IRPLLGERKAMLQAFVDREGLPYVQDPSNRDRRFDRATLRMAL 202
>gi|157964107|ref|YP_001498931.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5]
gi|166988065|sp|A8F0E8.1|TILS_RICM5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|157843883|gb|ABV84384.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5]
Length = 477
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|148258083|ref|YP_001242668.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1]
gi|189035964|sp|A5ERG8.1|TILS_BRASB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|146410256|gb|ABQ38762.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1]
Length = 358
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 108/216 (50%), Gaps = 31/216 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKT---GGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ L VSGGPDSMAL L A W+ GG LLA+TVDHGLR ES+ EA
Sbjct: 30 LTLAVSGGPDSMALMWLAARWRATRAGGPR-----------LLAVTVDHGLRPESRREAL 78
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+V +G+ +R W +P G + EAAR RYRL + Q ++ AH
Sbjct: 79 MVKQLARQLGLTHRTLR--WSGEKPAAG-IPEAARIARYRLLARAAEQAGASHVVTAHTR 135
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE ++RL R SG+ GLA MA S + +LL RPLL SK +
Sbjct: 136 DDQAETVLMRLLRGSGIAGLAAMAPVS--------------RRDGLLLARPLLSLSKARL 181
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
+ + +DPTNR P F R R+R + L++
Sbjct: 182 LATLRSAGIAFADDPTNRDPAFTRPRLRALMPTLAA 217
>gi|222475515|ref|YP_002563932.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida]
gi|255003502|ref|ZP_05278466.1| cell cycle protein (mesJ) [Anaplasma marginale str. Puerto Rico]
gi|255004624|ref|ZP_05279425.1| cell cycle protein (mesJ) [Anaplasma marginale str. Virginia]
gi|222419653|gb|ACM49676.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida]
Length = 501
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 100/205 (48%), Gaps = 28/205 (13%)
Query: 86 ALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+ VSGG DS+ L L A KT ++ + +TV+HG R E+ E V
Sbjct: 73 AVAVSGGVDSITLLNLVAALHKTQATSRP----------VVLTVNHGFRAEADHETRFVQ 122
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R +G+ CEI+R W R QE AR++RY L + C +H + LL AH+ DQ
Sbjct: 123 KRAVALGLDCEILR--WNRHRTSSKS-QETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQ 179
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++ L R SG+ GL+GM H+ I + RPLL F++ ++ +
Sbjct: 180 AETVLMHLERGSGIDGLSGM--------------HERSVFGDITIYRPLLGFTRQEILEY 225
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
WVEDP+N+ P + R R
Sbjct: 226 ATQKQLSWVEDPSNQDPKYRRTFFR 250
>gi|288957828|ref|YP_003448169.1| cell cycle protein [Azospirillum sp. B510]
gi|288910136|dbj|BAI71625.1| cell cycle protein [Azospirillum sp. B510]
Length = 448
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 113/213 (53%), Gaps = 28/213 (13%)
Query: 70 FSRRMA-MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F+R +A + G +P IA+GVSGG DS+AL +L W E LLA+TV
Sbjct: 12 FARALAALGGFEPAPAIAVGVSGGGDSVALALLLRHWVA----------EHGGSLLALTV 61
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR +S EA+ V ++ + + ++R W +P G LQ AAR R+RL C
Sbjct: 62 DHGLRPDSAAEASAVGRTMARLDVPHHVLR--WEGEKPSTG-LQAAARAARHRLLATACA 118
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ I L +AHH DDQAE +LRL+R SGV GLAGMA + +
Sbjct: 119 EAGILHLALAHHRDDQAETVLLRLARGSGVDGLAGMAPVR--------------ADGPVR 164
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP 281
++RPLL F D + C+ W+EDP+N +P
Sbjct: 165 IIRPLLGFPHDRLLATCRAEGVGWIEDPSNANP 197
>gi|406706632|ref|YP_006756985.1| tRNA(Ile)-lysidine synthetase [alpha proteobacterium HIMB5]
gi|406652408|gb|AFS47808.1| tRNA(Ile)-lysidine synthetase [alpha proteobacterium HIMB5]
Length = 343
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 107/216 (49%), Gaps = 27/216 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+GVSGGPDS+AL L + A +F VDH LR S +EA V
Sbjct: 42 FAVGVSGGPDSLALAYLCKVY----------ALKFGIKQKFYIVDHKLRSNSTKEAQHVK 91
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ I +I+ W +PK ++Q AR+ RY L K C ++ I ++I HH +D+
Sbjct: 92 KLLKKNSIEAKIL--TWRGAKPK-SNIQARAREKRYDLIAKECKKNNIKHIIIGHHLEDK 148
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E FI+RL+R SG+ GL S + I++ RPLL+F K+++ I
Sbjct: 149 LENFIIRLTRGSGLRGLVSFNRKSSM--------------SDIIIERPLLNFKKNELVFI 194
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 300
+D++ DP+N + F R RIR L +LS F
Sbjct: 195 TSHVFKDFISDPSNENQDFKRVRIRNFLKNLSLEGF 230
>gi|339022592|ref|ZP_08646520.1| Ile-tRNA lysidine synthase TilS [Acetobacter tropicalis NBRC
101654]
gi|338750406|dbj|GAA09824.1| Ile-tRNA lysidine synthase TilS [Acetobacter tropicalis NBRC
101654]
Length = 409
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 125/274 (45%), Gaps = 38/274 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IAL VSGG DS+ L L + W+ L+A VDHGLR ES EEA +
Sbjct: 25 IALAVSGGGDSLCLAWLASRWR--------------KRLIAFVVDHGLRPESAEEARLTV 70
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R++D+G+ I+ L P+ + E AR RY C + LL+ H ADDQ
Sbjct: 71 SRLADLGVPGRILTLTDLAKGPR---MAERARQARYAALAHACREMGCLDLLLGHQADDQ 127
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +R SG GLAGM +S+ + D++ LVRPLL FS+ +
Sbjct: 128 AETVAMRQRAGSGPTGLAGMGWSTVL---------PDMR-----LVRPLLGFSRAALRNT 173
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSL--GDLSSCSFKSELQAVISACRRTRSYVEHVC 322
+ WV+DP+N R R+R +L GD ++ + + ++ +Y +++
Sbjct: 174 LRQAGVAWVDDPSNEDIKAERVRVRQALLTGDRRDTLWQEAIHYGRARMQQEAAYTQYLA 233
Query: 323 SNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLS 356
N + +G+ + + P+ + + S
Sbjct: 234 QN-----AAFLPEGWVCLGSTLPEPALLSSLIRS 262
>gi|290977196|ref|XP_002671324.1| predicted protein [Naegleria gruberi]
gi|284084892|gb|EFC38580.1| predicted protein [Naegleria gruberi]
Length = 598
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 178/435 (40%), Gaps = 63/435 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA--- 140
++ + VSGG DSM +L W + G E ++A+ VDH +REES+ E
Sbjct: 121 KVGVAVSGGGDSMGTAILVKKWADYLKQKKGIDME----VVALIVDHQIREESEHEMLYV 176
Query: 141 -NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+++ V + C +C W D + KQ Q AR R + C+ +I +L+ H
Sbjct: 177 HEVLTKTVGYKNVFC--FQCLWPDNQKKQ---QRIARLKRQLIMSSECVSQKIDLLISGH 231
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
H D E I R++ +SG+ GL G+ Y+Y D +I+L RP L F +
Sbjct: 232 HKQDNIETMIHRVAFSSGINGLNGIPL------IYSYCVAD----ATIMLARPGLVFDCN 281
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL-SSCSFKSELQAVISACRRTRSYV 318
++ +C N WVEDP N R+ IR LG L S S + R +
Sbjct: 282 ELKAVCTQYNIKWVEDPKNSDEREFRSIIRSRLGLLYQSGVSPSNFYNFLLTLGAIRHIM 341
Query: 319 EHVCSNLINEAVTVMDQ-GYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGST 377
N N V D+ G+A I L K + S L ++Q++ R+ PV +
Sbjct: 342 LRESLNFYNRYVRFDDELGFAGIYFYSL--EKTAEFVASNALNSLIQYVTNREFPVTLGS 399
Query: 378 SKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSK------------ 425
K ++ Y+ + T + GC L P K L GPL K
Sbjct: 400 IKNVVRYLPS----TKRSLGGCLLVP-----DKKVLYVIRDTGPLRRKKNHTTIRFTDKG 450
Query: 426 --------LELFQIHSDGEQRHCVTDVEQI-LEDAKSYSNHLIQDASDKLLLSMISDSVP 476
+++FQ + +T +++ LE Y N LI + K+ D+ P
Sbjct: 451 IVWDNRFFIQIFQYNKMNIPEENITYSKKLSLEKQPEYDNILIPNYDGKV------DTDP 504
Query: 477 TEAKRFNMLSESTYK 491
+ +E+ +K
Sbjct: 505 NGIYKIRPFTETDHK 519
>gi|254995320|ref|ZP_05277510.1| cell cycle protein (mesJ) [Anaplasma marginale str. Mississippi]
Length = 501
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 100/205 (48%), Gaps = 28/205 (13%)
Query: 86 ALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+ VSGG DS+ L L A KT ++ + +TV+HG R E+ E V
Sbjct: 73 AVAVSGGVDSITLLNLVAALHKTQATSRP----------VVLTVNHGFRAEADHETRFVQ 122
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R +G+ CEI+R W R QE AR++RY L + C +H + LL AH+ DQ
Sbjct: 123 KRAVALGLDCEILR--WNRHRTSSKS-QETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQ 179
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++ L R SG+ GL+GM H+ I + RPLL F++ ++ +
Sbjct: 180 AETVLMHLERGSGIDGLSGM--------------HERSVFGDITIYRPLLGFTRQEILEY 225
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
WVEDP+N+ P + R R
Sbjct: 226 ATQKQLSWVEDPSNQDPKYRRTFFR 250
>gi|269958448|ref|YP_003328235.1| ATPase [Anaplasma centrale str. Israel]
gi|269848277|gb|ACZ48921.1| putative ATPase [Anaplasma centrale str. Israel]
Length = 447
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 163/375 (43%), Gaps = 47/375 (12%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGG DSM L L G F++ I +TV+HG R E+ E V
Sbjct: 26 AVAVSGGVDSMTLLNLV-----GMFHKTQATSRPI----VLTVNHGFRAEADYETRCVQK 76
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
R ++G+ C I+R W P + QE AR++RY L + C++H + LL AH+ DQA
Sbjct: 77 RALELGLECRILR--WGGYIPSKS--QEIAREIRYGLLHQWCVEHSVKFLLTAHNKSDQA 132
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E ++ L R SGV GL+GM H+ +I + RPLL+F++ ++ +
Sbjct: 133 ETVLMHLERGSGVDGLSGM--------------HERSVFGNITICRPLLNFTRQEILQYA 178
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCSN 324
WVEDP+N+ + R R + + + E L S R S + H +
Sbjct: 179 TQERLFWVEDPSNQDSKYRRTFFRNLIAESKNPGVIIERLCRTTSHMYRALSCILHYVRS 238
Query: 325 LINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHY 384
+++ + G+ I + L + + S+ L L L + + R S+ +L
Sbjct: 239 SLDDCLEFSPLGFITIKSQELR--SVPEEIASRLLLLSLMAMGGKDHKPRYSSFWPILTQ 296
Query: 385 IRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQRHCVTDV 444
+R T T GC V DG EL +I E R CV+
Sbjct: 297 MRQGGDFTPRTLHGCK-------------VFKESDGNFSIVRELARI----EGRICVSTT 339
Query: 445 EQILEDAKSYSNHLI 459
+I++ + ++ ++
Sbjct: 340 AEIMQWDRRFTIKIV 354
>gi|341583293|ref|YP_004763784.1| tRNA(Ile)-lysidine synthetase [Rickettsia heilongjiangensis 054]
gi|340807519|gb|AEK74107.1| tRNA(Ile)-lysidine synthetase [Rickettsia heilongjiangensis 054]
Length = 535
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 116/241 (48%), Gaps = 37/241 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIHIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD-------LSSCSFKSELQAVISACRRTRS 316
N W ED +N S + RN IR L LS +++ E + R T +
Sbjct: 173 YLVSHNITWFEDESNSSDKYRRNVIRKKLAKGADYIRHLSKPAYRKEFKG--DTERNTAA 230
Query: 317 Y 317
Y
Sbjct: 231 Y 231
>gi|383482880|ref|YP_005391794.1| tRNA(Ile)-lysidine synthase [Rickettsia montanensis str. OSU
85-930]
gi|378935234|gb|AFC73735.1| tRNA(Ile)-lysidine synthase [Rickettsia montanensis str. OSU
85-930]
Length = 481
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL+ + ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGLSNSNINWY---------------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|88657904|ref|YP_507881.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas]
gi|88599361|gb|ABD44830.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas]
Length = 434
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 29/207 (14%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGG DSM L L+A + N+N + +TV+HGLR E+ +EA V
Sbjct: 20 AIAVSGGIDSMTLLHLSARY----CNKNTP--------IVLTVNHGLRPEAAQEALFVFQ 67
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
++ ++C I+ +W G+ + ++Q +AR +RY+L + C +++I L++AH +DQA
Sbjct: 68 HSQNLNLKCHIL--NW-HGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQA 124
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E ++RL R SG+ GLAGM Y Y + I ++RPLL S+ ++ +
Sbjct: 125 ETIMIRLERGSGLDGLAGM-------QEYTYL-------NGICILRPLLSASRTELLQYA 170
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSL 292
N W+ D +N + + R R L
Sbjct: 171 NKNNITWINDTSNNNKKYKRTLYRNML 197
>gi|51473299|ref|YP_067056.1| cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington]
gi|383752075|ref|YP_005427175.1| cell cycle ATPase MesJ [Rickettsia typhi str. TH1527]
gi|383842910|ref|YP_005423413.1| cell cycle ATPase MesJ [Rickettsia typhi str. B9991CWPP]
gi|61216485|sp|Q68XR8.1|TILS_RICTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|51459611|gb|AAU03574.1| probable cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington]
gi|380758718|gb|AFE53953.1| cell cycle ATPase MesJ [Rickettsia typhi str. TH1527]
gi|380759557|gb|AFE54791.1| cell cycle ATPase MesJ [Rickettsia typhi str. B9991CWPP]
Length = 430
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 128/266 (48%), Gaps = 42/266 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS+AL L W N E L I+VDH LR +SK+E +
Sbjct: 21 KIAIAVSGGSDSVALLYLANIWAEKN---NIE-------LFIISVDHNLRAQSKQENYYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+++ + + D + +LQ AR+ RY L +C++ + VLL AHH DD
Sbjct: 71 QSISNNLKRKYYNLS---FDHQNNFSNLQARAREGRYDLMTNLCLELDVLVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL+ SS I + Y+ +I ++RPL + K ++ K
Sbjct: 128 YVENFCLRLERNSGIFGLS----SSNI---HWYN--------NIQIIRPLYNIPKSELVK 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE--LQAVISACR-RTRSYVEH 320
W ED +N S + RN IR L FK E ++A IS + +T +E
Sbjct: 173 YLVTNKIKWFEDESNLSDKYRRNIIRQKL-------FKEENYIKAEISVQQLKTNKLIED 225
Query: 321 VCS----NLINEAVTVMDQGYAVIDL 342
+ I EAV + + G+ +DL
Sbjct: 226 ELKPELISAIGEAVKIFEYGFTFLDL 251
>gi|15891990|ref|NP_359704.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7]
gi|20140671|sp|Q92JK0.1|TILS_RICCN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|15619104|gb|AAL02605.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7]
Length = 478
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVRHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|34580975|ref|ZP_00142455.1| cell cycle protein MesJ [Rickettsia sibirica 246]
gi|28262360|gb|EAA25864.1| cell cycle protein MesJ [Rickettsia sibirica 246]
Length = 478
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVRHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|350273092|ref|YP_004884405.1| cell cycle protein mesJ [Rickettsia japonica YH]
gi|348592305|dbj|BAK96266.1| cell cycle protein mesJ [Rickettsia japonica YH]
Length = 535
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 116/241 (48%), Gaps = 37/241 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQEIHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIHIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD-------LSSCSFKSELQAVISACRRTRS 316
N W ED +N S + RN IR L LS +++ E + R T +
Sbjct: 173 YLVSHNITWFEDESNSSDKYRRNVIRQKLAKGADYIRHLSKPAYRKEFKG--DTERNTAA 230
Query: 317 Y 317
Y
Sbjct: 231 Y 231
>gi|68171364|ref|ZP_00544759.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa]
gi|67999214|gb|EAM85869.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa]
Length = 442
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 29/207 (14%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ VSGG DSM L L+A + N+N + +TV+HGLR E+ +EA V
Sbjct: 28 AIAVSGGIDSMTLLHLSARY----CNKNTP--------IVLTVNHGLRPEAAQEALFVFQ 75
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
++ ++C I+ +W G+ + ++Q +AR +RY+L + C +++I L++AH +DQA
Sbjct: 76 HSQNLNLKCHIL--NW-HGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQA 132
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E ++RL R SG+ GLAGM Y Y + I ++RPLL S+ ++ +
Sbjct: 133 ETIMIRLERGSGLDGLAGM-------QEYTYL-------NGICILRPLLSASRTELLQYA 178
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSL 292
N W+ D +N + + R R L
Sbjct: 179 NKNNITWINDTSNNNKKYKRTLYRNML 205
>gi|402570705|ref|YP_006620048.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus meridiei DSM
13257]
gi|402251902|gb|AFQ42177.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus meridiei DSM
13257]
Length = 484
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 119/239 (49%), Gaps = 27/239 (11%)
Query: 72 RRMAMAGLKPHH-RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130
R+ + L P ++ + VSGGPDSMAL + W+ + Q E+G+ I L+ V H
Sbjct: 6 RKYILPQLIPSQTKVMVAVSGGPDSMALSHIL--WR---YVQE-ESGKEIS-LVLTHVHH 58
Query: 131 GLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQ 189
G+R+ES +EA +V + C I R D + G QEAAR+ RY +++ +
Sbjct: 59 GVRKESDDEAVLVQQMADKWKLPCLIHRFDSKQYAKESGKSFQEAAREWRYARWKEDMEE 118
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
++ +L AHH DQAE + RL R SG GLAGM Y D +
Sbjct: 119 YKCSLLATAHHLGDQAETILYRLLRGSGTAGLAGM-----------YPAKDS-------I 160
Query: 250 VRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 308
+RPLL FSK + C + D +N P++VRNRIR+ L S+ S +Q ++
Sbjct: 161 IRPLLTFSKASVLDYCAREAIPYALDHSNEEPIYVRNRIRLELLPELERSYNSRIQEIL 219
>gi|75676895|ref|YP_319316.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255]
gi|74421765|gb|ABA05964.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255]
Length = 371
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 98/210 (46%), Gaps = 25/210 (11%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
K + L VSGGPDS+AL L A W+ A + L+A+TVDH LR E+ E
Sbjct: 35 KASRALVLAVSGGPDSVALMWLAARWR--------RAMKRGPDLVAVTVDHALRREAARE 86
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V + I +R W +P G L AAR+ RY L K +L H
Sbjct: 87 ARQVKQLAKSLSIPHRTLR--WTGPKPATG-LPAAAREARYALLFKAARSLGASHVLTGH 143
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
DDQAE ++R+SR SG+ GL+ M+ + +LVRPLL+ K
Sbjct: 144 TLDDQAETVLMRISRGSGIAGLSAMSRETM--------------RDGFVLVRPLLNVPKA 189
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + D+ EDPTNR F R R+R
Sbjct: 190 RLIATLKKAKIDYAEDPTNRDLGFTRPRLR 219
>gi|407799316|ref|ZP_11146209.1| hypothetical protein OCGS_1282 [Oceaniovalibus guishaninsula
JLT2003]
gi|407058501|gb|EKE44444.1| hypothetical protein OCGS_1282 [Oceaniovalibus guishaninsula
JLT2003]
Length = 404
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 128/284 (45%), Gaps = 32/284 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DSMAL L A W AG L +TVDHGLR+ S +EA +V
Sbjct: 21 LGLAVSGGGDSMALLHLAAEW----------AGPSRRKLHVVTVDHGLRDGSADEAVMVR 70
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + +G+ + + R G+LQ+AAR R L + + +L+ H DDQ
Sbjct: 71 RQAAALGLTHDTLVWR----RETMGNLQDAARSARRGLIAAWAARLGVDAVLLGHTRDDQ 126
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++R++R SGV GLAGMA + I +RPLL + ++
Sbjct: 127 AETVLMRMARGSGVDGLAGMAEVG--------------RAQGIAWLRPLLTRGRAELRDW 172
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCS 323
DW EDP N + F R R R G L+ + ++SA R R +
Sbjct: 173 LTKRGLDWAEDPGNENSAFDRVRARRMAGTLADLGLSAARLELLSAHMARARDVLNDAMR 232
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFIC 367
+L +AV D V+D L ++ E + LA L++I
Sbjct: 233 DLAGQAVR-QDGPDLVLDRAALLAARPETRM--RLLAAGLRWIS 273
>gi|56697938|ref|YP_168309.1| PP-loop family protein [Ruegeria pomeroyi DSS-3]
gi|61216401|sp|Q5LNU7.1|TILS_SILPO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|56679675|gb|AAV96341.1| PP-loop family protein [Ruegeria pomeroyi DSS-3]
Length = 419
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 27/231 (11%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P R+ + VSGG DS+AL L A + GE L TVDHGLR ES E
Sbjct: 21 QPPRRLGVAVSGGGDSVALMHLLA--------RCFPRGEVK--LCVATVDHGLRSESASE 70
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A +V+ + + +G+ E + G +G+LQ+ AR RY L +++++ + +AH
Sbjct: 71 AALVARQAAGLGLPHETLLWT---GWTGEGNLQDQARRARYGLLTDWALRNRVTTVALAH 127
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
ADDQAE ++RL R++GV GLA MA ++LVRPLL ++D
Sbjct: 128 TADDQAETLLMRLGRSAGVSGLAAMAPRRM--------------QDGVVLVRPLLGITRD 173
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 310
+ + W EDP+N + R + R +L L+ ++ A ++A
Sbjct: 174 ALRDFLRAEGIAWAEDPSNEDIRYDRIKARQALAGLAPMGIDAQRLAEVAA 224
>gi|374318817|ref|YP_005065315.1| tRNA(Ile)-lysidine synthetase [Rickettsia slovaca 13-B]
gi|383750707|ref|YP_005425808.1| tRNA(Ile)-lysidine synthetase [Rickettsia slovaca str. D-CWPP]
gi|360041365|gb|AEV91747.1| tRNA(Ile)-lysidine synthetase [Rickettsia slovaca 13-B]
gi|379773721|gb|AFD19077.1| tRNA(Ile)-lysidine synthetase [Rickettsia slovaca str. D-CWPP]
Length = 533
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIHIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVRHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|238650509|ref|YP_002916361.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic]
gi|259533756|sp|C4K162.1|TILS_RICPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|238624607|gb|ACR47313.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic]
Length = 533
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KMSIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIHIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|383312045|ref|YP_005364846.1| cell cycle protein mesJ [Candidatus Rickettsia amblyommii str.
GAT-30V]
gi|378930705|gb|AFC69214.1| cell cycle protein mesJ [Candidatus Rickettsia amblyommii str.
GAT-30V]
Length = 535
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQ AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQARAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N +W ED +N S + RN IR L
Sbjct: 173 YLVSHNIEWFEDESNSSDKYRRNVIRQKLA 202
>gi|402224103|gb|EJU04166.1| hypothetical protein DACRYDRAFT_114565 [Dacryopinax sp. DJM-731
SS1]
Length = 520
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 103/219 (47%), Gaps = 13/219 (5%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DS+ L L +N+ G I+G IT+DHG R E+ +EA V
Sbjct: 29 LTVAVSGGADSIGLLWLL----RSLYNEAGITEPRING---ITIDHGFRPETAKEAEAVG 81
Query: 145 HRVSDMGIRCEIVRCDW----LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
D+G+ +I++ W P+ + + R RY + + LL H
Sbjct: 82 AFCRDIGVEHQIIKVPWGTNSYPNHPEPAQYESSGRWARYWILFHAMQESGSHALLTGHQ 141
Query: 201 ADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
A+DQ E I+R R SGVLG+ GM A + K + RP+L FSK+
Sbjct: 142 ANDQLETAIMRAERESGVLGMLGMRPIRRYGMGGPAPWLNFGEKGLHAFMCRPILTFSKE 201
Query: 260 DMYKICQGGNRDWVEDPTN-RSPLFVRNRIRMSLGDLSS 297
+ CQ N W EDP+N + L VRNRIR +L + S
Sbjct: 202 RLKATCQASNIPWTEDPSNLDTNLTVRNRIRATLDQIQS 240
>gi|453081336|gb|EMF09385.1| ATP_bind_3-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 581
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 109/241 (45%), Gaps = 40/241 (16%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P R+ L VSGG DSMAL + + +K + + VDHGLR ES+EEA
Sbjct: 34 PKGRLGLAVSGGVDSMALASICSDFK--------KENQLHYSFSGFVVDHGLRSESREEA 85
Query: 141 NIVSHRVSDMGIRCEIVRCDWLD-GRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V++ + + I EI++ DW G PK + + AR +RY+ K C Q +I +L+
Sbjct: 86 LQVANELRRLDIEPEILKLDWTPYGNPKDLPNFETIARRLRYQAIGKACFQQRISTVLVG 145
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHDDLKNHSI---------- 247
HHADD E + R+ GL G+ +++ I Y K HSI
Sbjct: 146 HHADDLGETVMSRIVARYLGEGLQGIKWTALIPECEGIYGVDASGKPHSINSSNTHTRKK 205
Query: 248 ------------------LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRI 288
L RPLL F+K + +ICQ N W ED TN L +RN I
Sbjct: 206 ERRKSAMSDAMLIESGGVYLNRPLLLFTKAQLIEICQKDNVQWFEDDTNSDKSLTIRNTI 265
Query: 289 R 289
R
Sbjct: 266 R 266
>gi|407787515|ref|ZP_11134656.1| tRNA(Ile)-lysidine synthetase [Celeribacter baekdonensis B30]
gi|407199793|gb|EKE69808.1| tRNA(Ile)-lysidine synthetase [Celeribacter baekdonensis B30]
Length = 419
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 112/226 (49%), Gaps = 28/226 (12%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
A A KP ++A+ VSGG DSMAL L A W E I L A+TV+HGLR
Sbjct: 18 AFAYDKPD-QLAVAVSGGGDSMALLHLMAEWAED---------EKIR-LWAVTVNHGLRP 66
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E+ EEA VS + ++ + W G QG+LQ+AAR RYRL I
Sbjct: 67 EAAEEARFVSEVAQKLQVKHTTL--TWT-GWSGQGNLQDAARRARYRLMTDWAKAQGINT 123
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+ +AH ADDQAE F +RL+R SG+ GL GM + I VRPLL
Sbjct: 124 IALAHTADDQAETFFMRLARASGIDGLTGMQRRR--------------VSDGITWVRPLL 169
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 300
+ ++ + + + W++DP+N + F R + R ++ +LS
Sbjct: 170 MQERFELRQYLRDLRQPWIDDPSNDNEAFDRIKARRAMEELSKLGI 215
>gi|383483412|ref|YP_005392325.1| tRNA(Ile)-lysidine synthase [Rickettsia parkeri str. Portsmouth]
gi|378935766|gb|AFC74266.1| tRNA(Ile)-lysidine synthase [Rickettsia parkeri str. Portsmouth]
Length = 478
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 104/210 (49%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYT 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVRHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|114799417|ref|YP_758891.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444]
gi|122942816|sp|Q0C5V2.1|TILS_HYPNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|114739591|gb|ABI77716.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444]
Length = 367
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 143/343 (41%), Gaps = 44/343 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DS+AL +L W + G L A+TVDHGLR ES+ EA V
Sbjct: 27 VGVAVSGGSDSLALLILAHRWAA----RRGRV------LRALTVDHGLRPESRAEAEAVG 76
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+DMGI +I+R + R Q A R R+ + +LL H ADDQ
Sbjct: 77 RLCADMGIEHDILRLEGAAPR------QSALRRGRHAALARTIADKSGHLLLTGHTADDQ 130
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE F++R + SG GLAGM + S + + + + RPLL ++ +
Sbjct: 131 AETFLMRARQGSGWYGLAGM---RPLSLSPVWP-----EGEGVFIARPLLGIRREALRAF 182
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR---TRSYVEHV 321
+ W +DP+N +P F R R+R L C S V+S R R +
Sbjct: 183 LRDEGLGWADDPSNDNPAFERVRMRRLL-----CPEMSRNVPVLSLVDRFQTLRMIEDGA 237
Query: 322 CSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLL 381
+ V + G V P + ++ L ++LQ R+ P RG + + L
Sbjct: 238 IWRWMTANVRAGEAGIHVASFAGHPPERA-----ARALGMLLQIAAGREMPPRGESLRRL 292
Query: 382 LHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSID-GPLP 423
I + T GC + + +C + GPLP
Sbjct: 293 AEEIVSKGDFRGATLGGCRIT------ARRTHICLKPECGPLP 329
>gi|239946943|ref|ZP_04698696.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921219|gb|EER21243.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 482
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 104/210 (49%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + D + +LQE R+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FDHQNNFSNLQERTREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K ++ +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSELVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVSHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|217976965|ref|YP_002361112.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2]
gi|217502341|gb|ACK49750.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2]
Length = 377
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 134/295 (45%), Gaps = 25/295 (8%)
Query: 73 RMAMAGLKP---HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129
R+A L+P +I L VSGGPDS+AL +L + W + G A L TVD
Sbjct: 36 RLAADLLRPWEEAQKILLAVSGGPDSIALMLLASRWARA-REERGLAAPL---LHVSTVD 91
Query: 130 HGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ 189
HGLR S EA V+ G+ E + W G+PK +QE AR+ RY L +
Sbjct: 92 HGLRTGSGAEAEAVAAWAKAAGLPHETL--IWNGGKPKT-RIQERAREARYDLLCACAAR 148
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
V+ AHHADDQAE + RL+R SG GLAGM S++ F H ++
Sbjct: 149 LGADVIATAHHADDQAETILFRLTRGSGPGGLAGM--SARFF------------RHGLIH 194
Query: 250 VRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
RPLL K + C+ D+ DP+N +P F R R+R L L+ +
Sbjct: 195 SRPLLSCDKAALIAYCEARRHDFFADPSNCNPAFARTRMRALLKLLADEGLDRAALLRLG 254
Query: 310 ACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQ 364
+ + VT+ G AVID+ L + ++I + A +L+
Sbjct: 255 RRAARAEEALAARARAVAADVTLQSGGGAVIDMAQLA-REPQEILIRVVAAQILE 308
>gi|251794097|ref|YP_003008828.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
gi|247541723|gb|ACS98741.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
Length = 475
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 117/235 (49%), Gaps = 32/235 (13%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
LTDM KYR + ++ G RI VSGGPDSMAL L W+ Q
Sbjct: 9 LTDMMKYRA--TEQLWSKG----DRIVAAVSGGPDSMALLHLL--WQAARQEQLT----- 55
Query: 120 IDGLLAITVDHGLREE-SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARD 177
++A V+HG R++ S++EA +V +G+ E++ D + G + Q AAR+
Sbjct: 56 ---VIAAHVNHGFRKDASRQEAEVVRQYAEKLGVPFEMIELDMPAYIEETGINAQSAARE 112
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY + +++ + +AHHADDQAE ++R+ R +G+ GLAGMA
Sbjct: 113 KRYAFLHETAVKYGASAIALAHHADDQAETVLMRVIRGAGLTGLAGMAPKR--------- 163
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
K ++ L+RPLL +K D+ + C + + D +N + RN +R+ +
Sbjct: 164 -----KEKNVELIRPLLRMNKSDIVRYCSERDVPYCLDSSNNERYYFRNVVRLDV 213
>gi|90426215|ref|YP_534585.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodopseudomonas
palustris BisB18]
gi|90108229|gb|ABD90266.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
BisB18]
Length = 346
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 101/205 (49%), Gaps = 25/205 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS+AL L A W+ + G A + ITVDHGLR E+ EA V
Sbjct: 27 VVLAVSGGPDSLALMWLAARWRKA--LRRGPA------ISVITVDHGLRPEAAREARDVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++ + +R W +P G + AAR+ RY+L + ++ AH DDQ
Sbjct: 79 RHAAELDLPHRTLR--WRGDKPSTG-VPAAAREARYQLLARAARAAGASHVMTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++R+SR SG+ GLA MA ++ F +++ RPLL+ SK +
Sbjct: 136 AETLLMRMSRGSGIAGLAAMARQTERF--------------GVIIARPLLEVSKAQLVAT 181
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
+ DP+N P + R R+R
Sbjct: 182 LDKAKIGFATDPSNTDPRYARPRLR 206
>gi|294678709|ref|YP_003579324.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003]
gi|294477529|gb|ADE86917.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003]
Length = 429
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 32/202 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ VSGG DS+A VL + + + A+TVDHGLR E+ EA +V
Sbjct: 42 RLAVAVSGGSDSLATLVLLSA---------------LHPVAAVTVDHGLRPEAAAEAEVV 86
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
++ GI I+R D GR +G+L +AAR R RL IG + + H DD
Sbjct: 87 GQFCAERGIDHSILRWD---GRGARGNLMDAARRARLRLIGAWAQDRGIGAVALGHTGDD 143
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE F++RL+R +G+ GL+GM + ++ +L RP L ++ ++
Sbjct: 144 QAETFLMRLAREAGLEGLSGM--------------RESFESEGVLWFRPFLSQTRAELRG 189
Query: 264 ICQGGNRDWVEDPTNRSPLFVR 285
Q W+EDP+N + F R
Sbjct: 190 HLQRQGIGWIEDPSNENDRFDR 211
>gi|365901248|ref|ZP_09439099.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Bradyrhizobium
sp. STM 3843]
gi|365418015|emb|CCE11641.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Bradyrhizobium
sp. STM 3843]
Length = 369
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 103/213 (48%), Gaps = 25/213 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDSMAL L A W+ +Q + I A+TVDHGLR E+ EA V
Sbjct: 36 LVLAVSGGPDSMALMWLAARWR----DQRAQGPRLI----AVTVDHGLRREAAREAREVK 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + +R W +P G + EAAR RYRL + ++ AH DDQ
Sbjct: 88 RVARTLDLPHRTLR--WRGDKPASG-VPEAARAARYRLLVQAARSAGASHIVTAHTRDDQ 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RL R SG+ GLA M+ S+ + L RPLL SK +
Sbjct: 145 AETLLMRLLRGSGIAGLAAMSAISE--------------REGLALARPLLGISKAQLIAT 190
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
Q ++EDPTN P F R R+R + L++
Sbjct: 191 LQAAEIKFIEDPTNVDPAFTRPRLRALMPALAA 223
>gi|259417352|ref|ZP_05741271.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B]
gi|259346258|gb|EEW58072.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B]
Length = 426
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 112/231 (48%), Gaps = 30/231 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL L A +NG L TVDHGLR +S EA V
Sbjct: 24 KLGIAVSGGSDSIALMHLFAALA----RKNGA------DLAIATVDHGLRTDSLIEARGV 73
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + +D+G+ +I+ P Q G+LQ AR RYRL + +I + + H AD
Sbjct: 74 AQQAADLGLSHDILTWQ----HPAQSGNLQAEARAARYRLLGEWATAREIEAVAVGHTAD 129
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F++RL R SGV GL+GMA S H I ++RPLL + D+
Sbjct: 130 DQAETFLMRLRRASGVAGLSGMA-----------SRH---HRDGIEILRPLLGIRRSDLR 175
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACR 312
+WV+DP+N F R R+R +L L + L AV R
Sbjct: 176 AYLTAREINWVDDPSNLDMKFERVRVRDALKALKPLGLTVDALTAVADNMR 226
>gi|298292991|ref|YP_003694930.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
gi|296929502|gb|ADH90311.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
Length = 342
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 110/235 (46%), Gaps = 26/235 (11%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H RI L VSGGPDS AL +L W+ G +AG L TVDHGLR E++ EA
Sbjct: 29 HARILLAVSGGPDSTALMLLAQRWREGR-----DAGPE---LAVATVDHGLRAEARTEAE 80
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + + I+ D PK LQEAAR RY + AH
Sbjct: 81 AVGALAARLSLPHAIL--DLSSPLPK-ARLQEAARHARYEALLAHARAIGASAIATAHTL 137
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE + RL R SG+ GLAG I S A + + L+RPLL K +
Sbjct: 138 DDQAETVLFRLMRGSGIGGLAG------IPSERALA--------EVELLRPLLGLPKAHL 183
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 316
+ C+ + EDP+NR P F R R+R L L+ + A + A R TR+
Sbjct: 184 IEECRRAGIGFAEDPSNRDPRFARARLRALLPALAEEGLDAPALARL-ANRMTRA 237
>gi|61216416|sp|Q5P9R1.2|TILS_ANAMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
Length = 466
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 86 ALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+ VSGG DS+ L L A KT ++ + +T +HG R E+ E V
Sbjct: 38 AVAVSGGVDSITLLNLVAALHKTQATSRP----------VVLTGNHGFRAEADHETRFVQ 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R +G+ CEI+R W R QE AR++RY L + C +H + LL AH+ DQ
Sbjct: 88 KRAVALGLDCEILR--WNRHRTSSKS-QETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQ 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++ L R SG+ GL+GM H+ I + RPLL F++ ++ +
Sbjct: 145 AETVLMHLERGSGIDGLSGM--------------HERSVFGDITIYRPLLGFTRQEILEY 190
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
WVEDP+N+ P + R R
Sbjct: 191 ATQKQLSWVEDPSNQDPKYRRTFFR 215
>gi|56417150|ref|YP_154224.1| cell cycle protein [Anaplasma marginale str. St. Maries]
gi|56388382|gb|AAV86969.1| cell cycle protein [Anaplasma marginale str. St. Maries]
Length = 501
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 86 ALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
A+ VSGG DS+ L L A KT ++ + +T +HG R E+ E V
Sbjct: 73 AVAVSGGVDSITLLNLVAALHKTQATSRP----------VVLTGNHGFRAEADHETRFVQ 122
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R +G+ CEI+R W R QE AR++RY L + C +H + LL AH+ DQ
Sbjct: 123 KRAVALGLDCEILR--WNRHRTSSKS-QETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQ 179
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++ L R SG+ GL+GM H+ I + RPLL F++ ++ +
Sbjct: 180 AETVLMHLERGSGIDGLSGM--------------HERSVFGDITIYRPLLGFTRQEILEY 225
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
WVEDP+N+ P + R R
Sbjct: 226 ATQKQLSWVEDPSNQDPKYRRTFFR 250
>gi|402770976|ref|YP_006590513.1| tRNA(Ile)-lysidine synthase [Methylocystis sp. SC2]
gi|401772996|emb|CCJ05862.1| tRNA(Ile)-lysidine synthase [Methylocystis sp. SC2]
Length = 344
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 111/219 (50%), Gaps = 27/219 (12%)
Query: 71 SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130
SR A+ L P+ + L VSGGPDS+AL +L A W G A TVDH
Sbjct: 20 SRERALDLLAPYPSLLLAVSGGPDSVALMLLCAQWPLRGSRHIAVA----------TVDH 69
Query: 131 GLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH 190
LREE++ EA V +G ++ W + +P LQE AR RY L +
Sbjct: 70 RLREEARAEAEEVGRWARALGYDHHLL--TWEEEKPST-RLQERARRARYALLTACARRI 126
Query: 191 QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLV 250
+ +AHH++DQAE + RL+R SGV GLAGMA ++ H+D I L+
Sbjct: 127 GASAIALAHHSEDQAETILFRLTRGSGVAGLAGMARIAR---------HED-----ISLL 172
Query: 251 RPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
RPLLDF K+++ +C + + DP+N F R R+R
Sbjct: 173 RPLLDFRKEELEAVCARAGQPFFRDPSNEDECFARVRLR 211
>gi|316932669|ref|YP_004107651.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1]
gi|315600383|gb|ADU42918.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1]
Length = 341
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 102/205 (49%), Gaps = 25/205 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGGPDS+AL L A W+ +A + L +TVDHGLR E+ EA V
Sbjct: 27 IVLAVSGGPDSLALMWLVARWR--------KALKRGPSLSVVTVDHGLRAEAAREARAVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + + +R W +P G +Q AAR RYRL + + ++ AH DDQ
Sbjct: 79 RLATSLDLPHRTLR--WRGDKPASG-IQAAARQARYRLLAEAARRAGATHIMTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RLSR SG+ GLA M+ + DD I+LVRPLLD K +
Sbjct: 136 AETVLMRLSRGSGIAGLAAMSRQ---------TARDD-----IVLVRPLLDVPKARLLAT 181
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
D+ DP+N P F R R+R
Sbjct: 182 LAKARIDFATDPSNADPRFARPRLR 206
>gi|344300177|gb|EGW30517.1| hypothetical protein SPAPADRAFT_157650 [Spathaspora passalidarum
NRRL Y-27907]
Length = 486
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ +SGG DSM L L +K + + E + AIT+DH R ES +E +
Sbjct: 26 RVAIALSGGADSMLLTYLLTQYK----HLHSPHTE----IYAITIDHKYRPESTDETKHI 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
V + + + G+ +E AR RY F+ VC QI L + HH DD
Sbjct: 78 RDIVKQWDVHHVVKTLSYDQEVSSIGNFEEVARHKRYLKFENVCKSKQISALFMGHHLDD 137
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL----KNHSILLVRPLLDFSKD 259
Q E FI RL NS + GLAG +++ +DL +HS+ + RP F K
Sbjct: 138 QLETFIQRLQGNSSLYGLAGTRKITRL-------PRNDLSPIDNHHSVFVYRPFWQFEKR 190
Query: 260 DMYKICQGGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 295
D+ CQ + DPTN+ L RN +R +GD+
Sbjct: 191 DIVDTCQFNGVRYFNDPTNQDIDLTRRNYLRHLIGDV 227
>gi|392382173|ref|YP_005031370.1| protein of unknown function [Azospirillum brasilense Sp245]
gi|356877138|emb|CCC97941.1| protein of unknown function [Azospirillum brasilense Sp245]
Length = 481
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 110/213 (51%), Gaps = 28/213 (13%)
Query: 70 FSRRM-AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F+ RM + G + R+A+GVSGG DS+ L +L W A E +LA+ V
Sbjct: 20 FAARMDRLGGFETRPRVAVGVSGGADSLGLVLLAQRW----------AAERGGDVLALIV 69
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR ES EA V + G+ I+R W +P G +QEAAR R+ L + C
Sbjct: 70 DHGLRAESAAEAARVGGWLQARGVAHAILR--WDGEKPASG-IQEAARAARHHLLAERCR 126
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ + L +AHH DDQAE +LR SR SG+ GLAGMA + ++ A +
Sbjct: 127 KEGVLHLALAHHRDDQAETVLLRFSRGSGIDGLAGMA---PVRAAGA-----------VR 172
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP 281
++RPLLD + C+ ++W+EDP P
Sbjct: 173 VIRPLLDLPHKRLVATCRAFGQEWIEDPVQPQP 205
>gi|99082202|ref|YP_614356.1| tRNA(Ile)-lysidine synthetase-like protein [Ruegeria sp. TM1040]
gi|99038482|gb|ABF65094.1| tRNA(Ile)-lysidine synthetase-like protein [Ruegeria sp. TM1040]
Length = 430
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 135/319 (42%), Gaps = 34/319 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI-TVDHGLREESKEEANI 142
++ + VSGG DS+AL + A D LA+ TVDHGLR ES+ EA
Sbjct: 24 KLGVAVSGGSDSVALMHVLA-----------TMARAEDTALAVATVDHGLRPESRREAEF 72
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ + D+G+ + + W G+LQ AR RYRL +G + + H AD
Sbjct: 73 VAQQAHDLGLSHQTL--TW-QHPADSGNLQAEARAARYRLLGDWARTQGLGAVAVGHTAD 129
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++RL R SGV GL GM +CH I ++RP+LD + D+
Sbjct: 130 DQAETVLMRLRRASGVAGLCGMP-----------TCH---HRDGIDVLRPMLDLRRSDLR 175
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 322
+ W+EDP+N F R RIR +L L + ++ R +
Sbjct: 176 AYLTARDVAWIEDPSNLDMKFERVRIRDALNALEPLGLTVDALTAVADNMRMANRALDSA 235
Query: 323 SNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLL 382
+ ++ + G V+D N ++E + L L P R + +L
Sbjct: 236 TRTAAASIGQIRLGMVVLDCAGFN--RLETEIARRLLVSALLHTNGAAYPPRRAP---VL 290
Query: 383 HYIRTFPCKTSLTAAGCYL 401
++ T GC++
Sbjct: 291 DALKALKEGRGATLQGCHI 309
>gi|149915623|ref|ZP_01904149.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b]
gi|149810515|gb|EDM70358.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b]
Length = 417
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 113/220 (51%), Gaps = 29/220 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ VSGG DS+ L V+ W+ G G A L A+TVDH LR E+ +EA V
Sbjct: 23 RLAVAVSGGSDSLGLLVVLNDWRLAG----GPA------LHAVTVDHRLRPEAAQEAAKV 72
Query: 144 SHRVSDMGIRCEIVR-CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ +G+ +I+ DW DGR G+L + AR RY L + I + IAH AD
Sbjct: 73 AADCKRLGVPHDILTWTDW-DGR---GNLSDQARRARYGLMAQWARGQGIACIAIAHTAD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F++RL+R +GV GL+ M S+ F S H + RP L + ++
Sbjct: 129 DQAETFLMRLARGAGVDGLSAM---SERFES-----------HGVTFCRPALAIFRHELR 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
+G WVEDP+N P + R + R +L +L+ +
Sbjct: 175 AALEGRGMTWVEDPSNEDPRYERVKARAALQELAPLGITT 214
>gi|340028029|ref|ZP_08664092.1| tRNA(Ile)-lysidine synthetase [Paracoccus sp. TRP]
Length = 411
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 140/330 (42%), Gaps = 50/330 (15%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H I + +SGG DSMAL L GW L A TVDHGLR S +EA
Sbjct: 23 HQAIGIALSGGGDSMALMHLAHGWGR-------------RPLFAATVDHGLRAASADEAQ 69
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ +GI E + W G G+L AAR+ R RL + + +L+ H
Sbjct: 70 QAGLAAASLGISHETLH--WTYG--GDGNLMAAAREGRLRLLSDWARRRGLSAVLLGHTL 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQAE ++RL+R +GV GL+ MA + + + +RPLL+ S+ D+
Sbjct: 126 NDQAETLLMRLNRGAGVDGLSAMAPAREAM--------------GVTWLRPLLEVSRADL 171
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHV 321
+ +G W +DP+N + + R R+R ++ + L I R+ + +
Sbjct: 172 RQWLRGRGISWADDPSNENEDYERVRVRKAI---------AALDLPIRQIARSAANLSMA 222
Query: 322 CSNLINEAVTVMDQGYA-----VIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 376
L + A + + ++ + L+ + +E + L L+F+ P RG
Sbjct: 223 REALCDFAARLSEGAFSRAGSLALPLDAFRGAPVE--IRRRLLVAGLRFVSGAAYPPRGE 280
Query: 377 TSKLLLHYIRTFPCKTSLTAAGCYLCPTPG 406
+LH + LT G L P G
Sbjct: 281 P---VLHALEALADGARLTLDGVILQPRDG 307
>gi|448533336|ref|XP_003870612.1| hypothetical protein CORT_0F02590 [Candida orthopsilosis Co 90-125]
gi|380354967|emb|CCG24483.1| hypothetical protein CORT_0F02590 [Candida orthopsilosis]
Length = 512
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 10/214 (4%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+G+SGGPDSM L L +KT + E L AIT+DH R S EA +
Sbjct: 25 KIAVGLSGGPDSMLLMWLLQKYKTLMHYDDME-------LHAITIDHNYRVNSATEARKI 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
S + + I + + D PK + +E AR RY +C I +++ HH D
Sbjct: 78 SQIMKQWNVNHIIEKLQY-DVDPKTIANFEEVARTKRYEAIGSICSTLDISTVVLGHHCD 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E F+ RL NS + GLA S I + + D + LVRPLL++ K +
Sbjct: 137 DQVETFVQRLQGNSSIFGLACTRQVSNIPLAVDLNPSDQPNFKPVKLVRPLLEYEKATIL 196
Query: 263 KICQGGNRDWVEDPTNR-SPLFVRNRIRMSLGDL 295
C + +V DPTN + L RN +R G++
Sbjct: 197 ATCDLNDIPYVVDPTNSDTKLTRRNYLRNLFGNV 230
>gi|27382258|ref|NP_773787.1| hypothetical protein bll7147 [Bradyrhizobium japonicum USDA 110]
gi|61216753|sp|Q9XBG6.1|TILS_BRAJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|5531226|emb|CAB51028.1| YaeN protein [Bradyrhizobium japonicum]
gi|27355429|dbj|BAC52412.1| yaeN [Bradyrhizobium japonicum USDA 110]
Length = 361
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 107/223 (47%), Gaps = 29/223 (13%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLRE 134
A LK + L VSGGPDS+AL L A W+ G L +TVDHGLR
Sbjct: 19 AELKSAPALVLAVSGGPDSIALMWLAARWQR----------SLARGPRLTVVTVDHGLRA 68
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E+ EA V +++G+ +R W +PK G L AAR+ RYRL +
Sbjct: 69 EAAREAREVKRLATELGLPHRTLR--WRGAKPKTG-LPAAAREARYRLLMQAARSAGASH 125
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+L AH DDQAE ++RL R SG+ GL+ MA ++ I+L RPLL
Sbjct: 126 VLTAHTRDDQAETLLMRLVRGSGLAGLSAMARLTE--------------RDGIVLARPLL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
D K + + + +DPTNR F R R+R L L++
Sbjct: 172 DVPKAQLIATLKRAKIGFADDPTNRDTAFTRPRLRALLPQLAA 214
>gi|260429327|ref|ZP_05783304.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45]
gi|260419950|gb|EEX13203.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45]
Length = 445
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 113/236 (47%), Gaps = 26/236 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGG DSMA+ L W + L +TVDHGLR E+ EA +V
Sbjct: 25 IGLAVSGGGDSMAMLTLAHNWTH----------RWGVRLWVVTVDHGLRPEAAAEATLVR 74
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++G +R W DG QG+L +AAR R L + + + +L AH DD
Sbjct: 75 DTCAELGWPHTTLRWHW-DG---QGNLMDAARRGRLSLIGR--WRGGLPAVLFAHTRDDV 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS-------CHD---DLKNHSILLVRPLL 254
AE F++RL+R SGV GL+ MA +I + + C D + +VRP L
Sbjct: 129 AETFLMRLARGSGVDGLSAMAPVREIRDAAPPAPLTEDECCGDRPPGIATDGFRVVRPCL 188
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 310
D ++++ + WV+DP+N P + R R+R L +L+ +E A +
Sbjct: 189 DMGREELRHYLRVLKGRWVDDPSNEDPHYDRARVRKLLAELAPQGLGTETLAATAG 244
>gi|13473327|ref|NP_104894.1| hypothetical protein mll3884 [Mesorhizobium loti MAFF303099]
gi|61216717|sp|Q98F87.1|TILS_RHILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|14024076|dbj|BAB50680.1| mll3884 [Mesorhizobium loti MAFF303099]
Length = 454
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 135/305 (44%), Gaps = 39/305 (12%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
H VSGG DS AL +L F++ G + + LLA+T+DHGLR+ S EA
Sbjct: 20 HGAVAAVSGGSDSTALLLLL----KHHFDRTGSSAK----LLAVTIDHGLRQGSAAEAQA 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ ++ GI + W +P G L AARD RY L + IG+++ H AD
Sbjct: 72 VAKLCAERGIAHRTL--TWTGRKPSTG-LPAAARDARYHLLAEAARAEGIGLIVTGHTAD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++R +R+ + LAG + ++ L + +VRPLL + +
Sbjct: 129 DQAETVLMRHARDRELADLAGRGLAGMAPAT--------LYDWREWIVRPLLGTRRSALR 180
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL----QAVI-------SAC 311
+ + W EDPTN F R R+R +L S+ ++ L QA + SA
Sbjct: 181 DFLRREHVGWAEDPTNIDEAFERPRVRAALAGESAGHMENTLRLAGQAAVERGQLGASAA 240
Query: 312 RRTRSYVEHVCSNLI--NEAVTVMDQGYAVIDLEILNPSKIEDIFLSK-------FLALV 362
R + LI + A+ + D A+ L IL + FL F+ L
Sbjct: 241 NLIRRIASQPSTGLIRLDPALLIADDQAAIYALRILLATAGGAAFLPDQARSAALFVRLK 300
Query: 363 LQFIC 367
F+C
Sbjct: 301 AGFLC 305
>gi|338983439|ref|ZP_08632634.1| tRNA(Ile)-lysidine synthetase [Acidiphilium sp. PM]
gi|338207650|gb|EGO95592.1| tRNA(Ile)-lysidine synthetase [Acidiphilium sp. PM]
Length = 274
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 125/270 (46%), Gaps = 45/270 (16%)
Query: 76 MAGLKPHH---RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
MA L P R+A+GVSGG DSMAL +L A W + G+ L + DHGL
Sbjct: 1 MAALGPFGAAPRVAVGVSGGADSMALTLLAASWAR---ERGGD-------CLGLIADHGL 50
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R ES +EA++ R++ +GI I+R G LQ ARD R+ I
Sbjct: 51 RPESADEASLTGRRLAALGIGYRILRLQLGPGP----ALQARARDARHASLAAAARGAGI 106
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
LL+ HHA DQ EL +R +R G GLAGMA ++ DD I+++RP
Sbjct: 107 VHLLLGHHAGDQDELRAMRAAR--GPRGLAGMA---------GFAARDD-----IVILRP 150
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL--GDLSSCSFKSELQAVISA 310
LL + + G WVEDP+N F R R+R + L S ++
Sbjct: 151 LLGTDPAVLRQFLSGRGIGWVEDPSNADARFERVRVRATRRQAALVPPSLDAD------- 203
Query: 311 CRRTRSYVEHVCSNLINEAVTVMDQGYAVI 340
R+ E + + + V++ +G+A++
Sbjct: 204 ---RRAAAERDVAATLAQNVSLRPEGWAIV 230
>gi|229586277|ref|YP_002844778.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5]
gi|259533753|sp|C3PM75.1|TILS_RICAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|228021327|gb|ACP53035.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5]
Length = 478
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 103/210 (49%), Gaps = 28/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I++ VSGG DS+AL L W N E L I+VDH LRE+SK+E + +
Sbjct: 21 KISIAVSGGSDSVALLYLANIWAEKN---NIE-------LFVISVDHNLREQSKQETHYI 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + + + + +LQE AR+ RY L +C++ I VLL AHH DD
Sbjct: 71 QNISNSLNRKHYSLS---FYHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F LRL RNSG+ GL SS + Y ++I ++RPL + K + +
Sbjct: 128 YVENFCLRLERNSGIFGL-----SSSNINWY----------NNIQIIRPLYNIPKSKLVE 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
N W ED +N S + RN IR L
Sbjct: 173 YLVRHNIKWFEDESNSSDKYRRNVIRQKLA 202
>gi|431792140|ref|YP_007219045.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430782366|gb|AGA67649.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium dichloroeliminans
LMG P-21439]
Length = 478
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 109/227 (48%), Gaps = 28/227 (12%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
E + + + P RI + VSGGPDSMAL + W+ NQ+ E L+
Sbjct: 3 EKLKQHVLHKQIPPGSRILVAVSGGPDSMALAHIL--WRFMKENQHQEIS-----LVLTH 55
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQ--GHLQEAARDMRYRLFQK 185
V HG+R+ES EE +V+ D I C I R D G K Q AAR+ RY +++
Sbjct: 56 VHHGVRKESDEEEKMVTRMARDWKIPCLIHRFD-SKGYAKSVGKSFQTAAREWRYARWEE 114
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
Q +L AHH DQAE + RL R SG GLAG I+
Sbjct: 115 DLQQENCSLLATAHHLGDQAETVLYRLLRGSGSAGLAG------IYPQKGK--------- 159
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L+RPLL +K+++ + C+ N + D +N P++ RN+IR+ L
Sbjct: 160 ---LIRPLLGVAKEEILQYCRSENLPYAIDCSNADPIYTRNKIRLEL 203
>gi|340777302|ref|ZP_08697245.1| Ile-tRNA lysidine synthase TilS [Acetobacter aceti NBRC 14818]
Length = 346
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 122/258 (47%), Gaps = 40/258 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+AL VSGG DS+AL L A W+ L+A VDHGLR E +EA
Sbjct: 44 VALAVSGGGDSIALAWLAASWRKR--------------LIAFVVDHGLRPEFAQEAASAL 89
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+S++GI E++R L P L + ARD RY + + C + LL+AH ADDQ
Sbjct: 90 KTLSELGIPAELLRVRDL---PYGPALAKRARDARYEVLIEACRRVGAVDLLVAHQADDQ 146
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E +R R SG GL+GMA+ S+ + ++RPLL +S++ +
Sbjct: 147 VETVGMRQRRGSGT-GLSGMAWVSE--------------RADVRIIRPLLGYSRETLRNT 191
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL--QAVISACRRTRSYVEHVC 322
+ W +DP+N + R R+R L S + K L QA ++A R R E
Sbjct: 192 LRQAGLGWCDDPSNENERAERVRVRKQL----SPTEKQALLRQAEMAADERVRQ--ERAI 245
Query: 323 SNLINEAVTVMDQGYAVI 340
++ + E +M G+ +
Sbjct: 246 THDLVETQCLMSGGWVAL 263
>gi|126725520|ref|ZP_01741362.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150]
gi|126704724|gb|EBA03815.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150]
Length = 419
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 140/320 (43%), Gaps = 34/320 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ VSGG DSMAL VL W +NG L +TVDH LR +++ EA V
Sbjct: 26 FGVAVSGGSDSMALLVLANAWAI----ENGHV------LYVVTVDHQLRPDARVEAETVG 75
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
S +G+ +++ + GR G+ E AR+ RY L Q ++ L + H DDQ
Sbjct: 76 DFCSTLGLPHQVLTWNGWVGR---GNKAELARNARYDLMQVWAKSLRLNGLFLGHTEDDQ 132
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++ ++R SGV GL+ M A H DL +L+RPLL F++ D+ +I
Sbjct: 133 AETLLMSIARKSGVDGLSAM---------RARRAHGDL-----VLMRPLLGFARGDLRQI 178
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVCS 323
G+ W +DP+N R ++R L D+++ +S L V + +S + V
Sbjct: 179 LTEGDISWADDPSNDDITSERIKMRHLLTDMAASGIDRSALAQVALNLQSAQSALAVVAH 238
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
+ + T + V + D + LA L ++ Q R K LL
Sbjct: 239 DAAKKMATFVGGEIHVATSAFF---ALPDETRFRILAHSLTWLASAQNRPR---QKALLQ 292
Query: 384 YIRTFPCKTSLTAAGCYLCP 403
+ T GC + P
Sbjct: 293 VMDAIGLGKIATLHGCIVYP 312
>gi|39934200|ref|NP_946476.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodopseudomonas
palustris CGA009]
gi|61216538|sp|Q6NAQ6.1|TILS_RHOPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|39648048|emb|CAE26568.1| YaeN protein [Rhodopseudomonas palustris CGA009]
Length = 346
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 114/244 (46%), Gaps = 28/244 (11%)
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
TD +RR+ A K I L VSGGPDS+AL L A W+ + G A
Sbjct: 4 TDHEAVSATEARRL-FADWKAAPAIVLAVSGGPDSLALMWLAARWRKA--LKRGPA---- 56
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
L +TVDHGLR E+ EA V + + + +R W +P G +Q AAR RY
Sbjct: 57 --LAVVTVDHGLRPEAAAEARAVKRLAASLDLPHRTLR--WSGDKPSTG-IQAAARGARY 111
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
RL K ++ AH DDQAE ++RLSR SG+ GLA MA
Sbjct: 112 RLLAKAAKTLGASHVMTAHTRDDQAETVLMRLSRGSGIAGLAAMA--------------R 157
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS--C 298
+++ ++L RPLLD K + + DP+N P F R R+R + L++ C
Sbjct: 158 EIERDGVVLARPLLDVPKARLIATLAKARIAFATDPSNADPRFTRPRLRELMPQLAAEGC 217
Query: 299 SFKS 302
+S
Sbjct: 218 DARS 221
>gi|83312306|ref|YP_422570.1| ATPase [Magnetospirillum magneticum AMB-1]
gi|82947147|dbj|BAE52011.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Magnetospirillum magneticum AMB-1]
Length = 443
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 134/278 (48%), Gaps = 29/278 (10%)
Query: 70 FSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
FSR MA G + R+A+ VSGG DS+AL +L A W + GE +LA+TV
Sbjct: 11 FSRLMAPLGPFEAAPRLAVAVSGGADSLALALLAADWAKA---RGGE-------VLALTV 60
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DH LR ES EA V ++ GI I+ W +P LQ AAR RY L + C
Sbjct: 61 DHRLRPESAAEAARVGAWLARDGISHRIL--AWEGDKPAA-DLQAAARAARYGLLGEACA 117
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
I L +AHH DDQAE +LRL R SG+ GL MA ++ +S+
Sbjct: 118 AEGILHLALAHHQDDQAETLLLRLGRGSGLEGLGAMA--AERPTSWGR------------ 163
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS-ELQAV 307
L+RPLL + + + ++W DP+NR+P F R R+R GDL++ L
Sbjct: 164 LLRPLLPVPRVRLEATLRHRGQEWTSDPSNRNPAFARVRLRHLAGDLAAEGMTPRRLAET 223
Query: 308 ISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 345
R ++ V+ + + VT+ G+ + E L
Sbjct: 224 AGRLARAQAAVDSMVAEAAARHVTLDPAGFGRLRPEAL 261
>gi|392423529|ref|YP_006464523.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus acidiphilus SJ4]
gi|391353492|gb|AFM39191.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus acidiphilus SJ4]
Length = 471
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 105/210 (50%), Gaps = 26/210 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGGPDSMAL + W+ +++ G L+ V HG+R+ES +E +V
Sbjct: 19 RILVAVSGGPDSMALGHIL--WRY--MHEDSTRG---ISLVITHVHHGVRKESDQELELV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
I C R D G QEAAR+ RY +Q+ + + +L AHH
Sbjct: 72 QQMADLWEIPCLTHRFDSKGYAHDMGQSFQEAAREWRYARWQEDMRKEECTLLATAHHLG 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE + R+ R SG GLAG+ Y D ++RPLL F+K+D++
Sbjct: 132 DQAETILYRILRGSGTAGLAGI-----------YPSKDS-------IIRPLLTFTKEDIF 173
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ C+ + D +N P++VRNRIR+ L
Sbjct: 174 RYCELEKLPYAIDQSNHQPVYVRNRIRLEL 203
>gi|397677306|ref|YP_006518844.1| tRNA(Ile)-lysidine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395397995|gb|AFN57322.1| tRNA(Ile)-lysidine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 329
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 27/207 (13%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ + VSGG DS+AL +L G +F + A+TVDHG+R E+ EEA
Sbjct: 30 EKLGIAVSGGSDSLALLLL------------GAVSDF--PVEAVTVDHGMRPEAAEEARF 75
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ +G+ +I+ ++ K +Q AAR RY L + + +G L+ AHHAD
Sbjct: 76 VAQICQQIGVPHQILTTK-IEANGK--GMQAAARIRRYALMAEWAKEKNVGALMTAHHAD 132
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F++R +R SG+ GLA + I + + + L+RPLL F++ +
Sbjct: 133 DQAETFLMRAARGSGLNGLAAIRPDVVITA----------EGQKLRLLRPLLGFTRSALA 182
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
++ + +V DP+N +P + R R
Sbjct: 183 EVVEKAGFTFVSDPSNDNPHYDRTHFR 209
>gi|254510246|ref|ZP_05122313.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11]
gi|221533957|gb|EEE36945.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11]
Length = 417
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 122/270 (45%), Gaps = 35/270 (12%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
R+ + VSGG DS AL L A Q E I L A TVDHGLR ++ EA
Sbjct: 22 RRLGVAVSGGSDSTALMRLLAD-----IAQR----EQI-ALFAATVDHGLRADAASEAAT 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V++ + GI E ++ DG G+LQ+ AR RYRL + +G + + H AD
Sbjct: 72 VANLAHNWGIPHETLKWRGWDG---TGNLQDHARRARYRLLTGWAQANGLGAIALGHTAD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++RL+R +GV GL+ MA + LL+RP+L ++ +
Sbjct: 129 DQAETLLMRLARAAGVSGLSAMAGMR--------------REGETLLLRPMLAVTRARLR 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHV 321
W++DP+N+ F R + R +L L+ +E L V + R +
Sbjct: 175 DYLTAQGIAWIDDPSNQDLRFDRIKTRQALSGLTQIGITAESLSRVAENLAQAREALAQY 234
Query: 322 CSNLINEAVTVMD-------QGYAVIDLEI 344
+ VMD +G+A + EI
Sbjct: 235 AQESAAGVMRVMDGDLCVDPEGFAALPEEI 264
>gi|182680532|ref|YP_001834678.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182636415|gb|ACB97189.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 400
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 135/294 (45%), Gaps = 32/294 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ L VSGGPDS+AL +L A W EA L +VDHGLR +S EA V
Sbjct: 84 KVLLAVSGGPDSVALMLLAAQW--------AEAVWKAPPLSVASVDHGLRPDSLAEAEQV 135
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV--LLIAHHA 201
+ + +G+ I+R W +PK LQE ARD RY L + IG L+ AHHA
Sbjct: 136 AEWAARLGLPHHILR--WEGEKPKT-RLQERARDARYGLL--IAHAETIGADYLVTAHHA 190
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE + RL R SG GL GM +F + +L RPLL +K ++
Sbjct: 191 DDQAETILFRLLRGSGPRGLKGM---ESLF-----------QRGELLHARPLLGMTKAEL 236
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEH 320
IC + DP+N F R R+R +S ++ L + R + +
Sbjct: 237 LAICDTCRHPFFTDPSNLDVRFARARLRRMERRFASAGLDRAALLRLGQRAARAEAVIAE 296
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVR 374
+ L G+ +DL +++ + E+I L A +L + R+RP R
Sbjct: 297 RAAALRASLPAERAPGFVQLDLALVS-REPEEILLRLIEAEILD-LTARERPPR 348
>gi|312904628|ref|ZP_07763783.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635]
gi|422687630|ref|ZP_16745806.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0630]
gi|422733285|ref|ZP_16789606.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0645]
gi|310631980|gb|EFQ15263.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635]
gi|315160783|gb|EFU04800.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0645]
gi|315579382|gb|EFU91573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0630]
Length = 497
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L S + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKESPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|257088703|ref|ZP_05583064.1| predicted protein [Enterococcus faecalis CH188]
gi|397698785|ref|YP_006536573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D32]
gi|256997515|gb|EEU84035.1| predicted protein [Enterococcus faecalis CH188]
gi|397335424|gb|AFO43096.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D32]
Length = 462
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L S + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKESPAYQHFFLTAFFQKTL 276
>gi|56552554|ref|YP_163393.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|384412386|ref|YP_005621751.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|61217187|sp|Q5NLX8.1|TILS_ZYMMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|56544128|gb|AAV90282.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|335932760|gb|AEH63300.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 329
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 38/305 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL +L G +F + A+TVDHG+R E+ EEA V
Sbjct: 31 KLGIAVSGGSDSLALLLL------------GAVSDF--PVEAVTVDHGMRPEAAEEARFV 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +G+ +I+ +Q AAR RY L + + +G L+ AHHADD
Sbjct: 77 AQICQQIGVPHQILTTKI---EANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADD 133
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE F++R +R SG+ GLA + I + + + L+RPLL F++ + +
Sbjct: 134 QAETFLMRAARGSGLNGLAAIRPDVVITA----------EGQKLRLLRPLLGFTRSALAE 183
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
I + +V DP+N +P + R R L S + + C+++ +E + +
Sbjct: 184 IVEKAGFTFVSDPSNDNPHYDRTHFRRLL-KASPWINRQHIAEAARYCQQSEEAIEWITA 242
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
A + +G ++ L+P+++ L + + ++ I +RGS L
Sbjct: 243 K--EAAARIRKKG----EVLYLDPTELPIEILRRLVLRAMETITG-NTALRGSA---LSR 292
Query: 384 YIRTF 388
+IR+
Sbjct: 293 FIRSL 297
>gi|338708436|ref|YP_004662637.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336295240|gb|AEI38347.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 329
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 142/293 (48%), Gaps = 35/293 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL +L G+ GF+ + A+TVDH LR+ES EEA V
Sbjct: 31 KLGIAVSGGGDSLALLLL--GY-VSGFD-----------VEAVTVDHSLRQESAEEARFV 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + I +I+ +Q AAR RY L + + Q+ L+ AHHADD
Sbjct: 77 AQICQQLAIPHQILTTQI---EATGEGIQAAARIRRYALMAQWAKERQVTALMTAHHADD 133
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE ++R + SG+ GLA + + +FS+ + +I L+RPLLDFS+ ++
Sbjct: 134 QAETLLMRAAHGSGIAGLAAIR-PNVLFSA---------EGQTIRLLRPLLDFSRLELAT 183
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
I + V DP+N +P + R R L + + +L C+++ ++ +
Sbjct: 184 IVEKAGLKAVSDPSNDNPHYDRTHFRRLL-IAAPWIDRRKLANTARYCQQSEEALDWITQ 242
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 376
A + QG V +P + L + + L LQ + ++++ VRG+
Sbjct: 243 K--EAAARIRLQGKGV----RFDPEDLPIEILRRLVVLCLQRVGEKKQ-VRGT 288
>gi|148259382|ref|YP_001233509.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5]
gi|146401063|gb|ABQ29590.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5]
Length = 390
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 125/270 (46%), Gaps = 45/270 (16%)
Query: 76 MAGLKPHH---RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
MA L P R+A+GVSGG DSMAL +L A W + G+ L + DHGL
Sbjct: 2 MAALGPFGAAPRVAVGVSGGADSMALTLLAASWAR---ERGGD-------CLGLIADHGL 51
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R ES +EA++ R++ +GI I+R G LQ ARD R+ I
Sbjct: 52 RPESADEASLTGRRLAALGIGYRILRLQLGPGP----ALQARARDARHASLAAAARGAGI 107
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
LL+ HHA DQ EL +R +R G GLAGMA ++ DD I+++RP
Sbjct: 108 VHLLLGHHAGDQDELRAMRAAR--GPRGLAGMA---------GFAARDD-----IVILRP 151
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL--GDLSSCSFKSELQAVISA 310
LL + + G WVEDP+N F R R+R + L S ++ +A
Sbjct: 152 LLGTDPAVLREFLSGRGIGWVEDPSNADARFERVRVRATRRQAALVPPSLDADRRAAAE- 210
Query: 311 CRRTRSYVEHVCSNLINEAVTVMDQGYAVI 340
R E + N V++ +G+A++
Sbjct: 211 ----RDVAETLARN-----VSLRPEGWAIV 231
>gi|398823073|ref|ZP_10581441.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. YR681]
gi|398226247|gb|EJN12501.1| tRNA(Ile)-lysidine synthetase [Bradyrhizobium sp. YR681]
Length = 364
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 105/213 (49%), Gaps = 25/213 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS+AL L A W+ ++ G + +TVDHGLR E+ EA V
Sbjct: 27 LVLAVSGGPDSVALMWLAARWR-----RSLARGPLLS---VVTVDHGLRPEAAREAREVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ +G+ +R W +PK G L AARD RYRL + + +L AH DDQ
Sbjct: 79 RLATGLGLTHRTLR--WRGAKPKTG-LPAAARDARYRLLARAARAARASHVLTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++R+ R SG+ GL+ M + D I+L RPLLD K +
Sbjct: 136 AETLLMRMFRGSGLAGLSAM---------TRLTARD-----GIVLARPLLDVPKSQLIAT 181
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
+ +DPTNR P F R R+R L L++
Sbjct: 182 LTRAGIGFADDPTNRDPAFTRPRLRALLPQLAA 214
>gi|58040122|ref|YP_192086.1| cell cycle protein MesJ [Gluconobacter oxydans 621H]
gi|61216387|sp|Q5FQB6.1|TILS_GLUOX RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|58002536|gb|AAW61430.1| Cell cycle protein MesJ [Gluconobacter oxydans 621H]
Length = 398
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DSMAL L W+ ++A VDH LR ES EA +
Sbjct: 16 VGLAVSGGADSMALAFLARRWRRN--------------VVAFVVDHALRPESAAEAQLTV 61
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
HR++ M ++ ++ L PK G +QE AR R+ + C+ LL+AHHA DQ
Sbjct: 62 HRLAGMNVKARLLT---LAPFPK-GRMQERARHARFEALEAACVSEGCLDLLVAHHAGDQ 117
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E +R SG LGL+G+ S I LVRPLL F +
Sbjct: 118 DETVWMRHLHASGPLGLSGIQPVS--------------VRGRIRLVRPLLTFPTARLRLT 163
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q N W+EDP+N + F R R+R L
Sbjct: 164 LQAENLPWIEDPSNANRRFERVRLRQDL 191
>gi|260753788|ref|YP_003226681.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553151|gb|ACV76097.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 329
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 38/305 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL +L G +F + A+TVDHG+R E+ EEA V
Sbjct: 31 KLGIAVSGGSDSLALLLL------------GAVSDF--PVEAVTVDHGMRPEAAEEARFV 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +G+ +I+ +Q AAR RY L + + +G L+ AHHADD
Sbjct: 77 AQICQQIGVPHQILTTKI---EANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADD 133
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE F++R +R SG+ GLA + I + + + L+RPLL F++ + +
Sbjct: 134 QAETFLMRAARGSGLNGLAAIRPDVVITA----------EGQKLRLLRPLLGFTRSALAE 183
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
I + +V DP+N +P + R R L S + + C+++ +E + +
Sbjct: 184 IVKKAGFTFVSDPSNDNPHYDRTHFRRLL-KASPWINRQHIAEAARYCQQSEEAIEWITA 242
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
A + +G ++ L+P+++ L + + ++ I +RGS L
Sbjct: 243 K--EAAARIRKKG----EVLYLDPTELPIEILRRLVLRAMETITG-NTALRGSA---LSR 292
Query: 384 YIRTF 388
+IR+
Sbjct: 293 FIRSL 297
>gi|163796933|ref|ZP_02190889.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [alpha proteobacterium BAL199]
gi|159177680|gb|EDP62231.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [alpha proteobacterium BAL199]
Length = 426
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 135/293 (46%), Gaps = 34/293 (11%)
Query: 96 MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCE 155
MAL LT W G +G A LL TVDHGLR E+ EA V + G
Sbjct: 1 MALLHLTDAWARG----HGRA------LLVYTVDHGLRPEAVVEAGRVGQVCAMAGRPHR 50
Query: 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215
I+R WL +P G LQ AAR RY L + C + LL+AHH +DQAE + R+ R
Sbjct: 51 ILR--WLGTKPGSG-LQAAARRARYDLMAQACRDDGVVDLLLAHHLEDQAETVLHRIDRG 107
Query: 216 SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVED 275
+G GLAGMA + F + L+RPLLD K + C+ +W ED
Sbjct: 108 TGPDGLAGMA-RVRAFD-------------GVRLLRPLLDVPKVRLLATCRSVGVEWAED 153
Query: 276 PTNRSPLFVRNRIRM---SLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV 332
P+N P F R +R L D+ S + L + SA R+ ++ ++ + + +V
Sbjct: 154 PSNSDPRFARTELRQLAPVLADVGVTSIR--LGRLASAMASARAALDGFTADWMAQHASV 211
Query: 333 MDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 385
+ G ++ +L + + + + + L+ I P+R + LL +I
Sbjct: 212 LLVGAVRMNRAVLVEAPV--VLRRRLIDRALRAIGGNNYPLRSDGLERLLAWI 262
>gi|330991882|ref|ZP_08315831.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1]
gi|329760903|gb|EGG77398.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1]
Length = 425
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 110/227 (48%), Gaps = 37/227 (16%)
Query: 70 FSRRMAMAGLKPHH--RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
F+ MA G P H +A+ VSGG DSMAL VL W+ ++ +
Sbjct: 17 FAPVMAALGPWPGHGVPVAVAVSGGADSMALAVLARQWRPD--------------VVGLV 62
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDHGLR ES+ EA R+S +G+ ++ + L+ P+ E AR MRY C
Sbjct: 63 VDHGLRAESRREAEQTIGRLSALGLSARLLVLEGLERGPRM---AERARRMRYAALSAAC 119
Query: 188 IQHQIGVL--LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+IG L L+AHHA DQAE ++R SG GLAGMA + + H
Sbjct: 120 --REIGALDLLVAHHAGDQAETVMMRQHAASGDDGLAGMALVTPM--------------H 163
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ LVRPLL F+K +Y + WVEDP+N R R R +L
Sbjct: 164 DVRLVRPLLSFAKPALYATVRAAGLAWVEDPSNADLRTGRARARQAL 210
>gi|254488340|ref|ZP_05101545.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
gi|214045209|gb|EEB85847.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
Length = 419
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 137/322 (42%), Gaps = 34/322 (10%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P I + VSGG DS+AL L + A L TVDHGLR E+ EA
Sbjct: 17 PPKTIGVAVSGGSDSLALLHLL----------HDFAVTHSCTLHVATVDHGLRREAGAEA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V+ +G+ E++ G + G+LQ AR RY+L + Q+ V+ + H
Sbjct: 67 AMVADTCRSLGLDHEVLHWQ---GWDRSGNLQNEARKARYQLLADWGRRRQLDVIALGHT 123
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
ADDQAE F++RL+R +GV GL+ M D + + +RPLL +
Sbjct: 124 ADDQAETFLMRLARRAGVDGLSAMP--------------DRFEREGMTWIRPLLGARRAA 169
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVE 319
+ + W +DP+N + R RIR +L L ++E L V + +
Sbjct: 170 LQAYLESNGIQWADDPSNEDTRYDRVRIRNALSILEGIGVEAEALSVVAQNMSAAKDALN 229
Query: 320 HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSK 379
H V+ + G ID+ LN E + +A L+++ R +
Sbjct: 230 HQMQQTARAYVS-LHAGAVAIDVAGLNAQPFE--IRRRLIAHALKWVNGAYYAPRSAALG 286
Query: 380 LLLHYIRTFPCKTSLTAAGCYL 401
++ + T P S T GC L
Sbjct: 287 DVMAALATAP---SATLQGCEL 305
>gi|422735120|ref|ZP_16791400.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1341]
gi|315168156|gb|EFU12173.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1341]
Length = 497
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTQQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|227520048|ref|ZP_03950097.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104]
gi|227555909|ref|ZP_03985956.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22]
gi|422712934|ref|ZP_16769694.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309A]
gi|422718248|ref|ZP_16774919.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309B]
gi|424678909|ref|ZP_18115747.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV103]
gi|424679712|ref|ZP_18116526.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV116]
gi|424684119|ref|ZP_18120845.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV129]
gi|424688440|ref|ZP_18125046.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV25]
gi|424691556|ref|ZP_18128079.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV31]
gi|424695126|ref|ZP_18131510.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV37]
gi|424696484|ref|ZP_18132829.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV41]
gi|424701884|ref|ZP_18138050.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV62]
gi|424704930|ref|ZP_18141016.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV63]
gi|424706365|ref|ZP_18142372.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV65]
gi|424719056|ref|ZP_18148284.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV68]
gi|424719976|ref|ZP_18149102.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV72]
gi|424722739|ref|ZP_18151764.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV73]
gi|424733460|ref|ZP_18162020.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV81]
gi|424735220|ref|ZP_18163690.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV85]
gi|424754564|ref|ZP_18182473.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV93]
gi|227072596|gb|EEI10559.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104]
gi|227174966|gb|EEI55938.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22]
gi|315573571|gb|EFU85762.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309B]
gi|315582081|gb|EFU94272.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309A]
gi|402350612|gb|EJU85514.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV103]
gi|402355667|gb|EJU90429.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV116]
gi|402360884|gb|EJU95478.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV25]
gi|402362111|gb|EJU96651.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV31]
gi|402362676|gb|EJU97194.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV129]
gi|402368973|gb|EJV03272.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV37]
gi|402370848|gb|EJV05037.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV62]
gi|402377526|gb|EJV11424.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV41]
gi|402380132|gb|EJV13901.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV68]
gi|402380540|gb|EJV14290.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV63]
gi|402388173|gb|EJV21622.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV65]
gi|402391828|gb|EJV25108.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV81]
gi|402394939|gb|EJV28086.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV72]
gi|402400921|gb|EJV33726.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV73]
gi|402403013|gb|EJV35705.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV93]
gi|402404110|gb|EJV36741.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ERV85]
Length = 497
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|422698795|ref|ZP_16756680.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1346]
gi|315172637|gb|EFU16654.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1346]
Length = 497
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|307278662|ref|ZP_07559732.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860]
gi|306504722|gb|EFM73922.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860]
Length = 497
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WKDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|229546907|ref|ZP_04435632.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322]
gi|293382701|ref|ZP_06628626.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712]
gi|293388117|ref|ZP_06632644.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613]
gi|307290191|ref|ZP_07570109.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411]
gi|312908597|ref|ZP_07767539.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512]
gi|312909255|ref|ZP_07768112.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516]
gi|229307835|gb|EEN73822.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322]
gi|291079861|gb|EFE17225.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712]
gi|291082493|gb|EFE19456.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613]
gi|306498747|gb|EFM68246.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411]
gi|310625384|gb|EFQ08667.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512]
gi|311290497|gb|EFQ69053.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516]
Length = 497
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|29374904|ref|NP_814057.1| hypothetical protein EF0263 [Enterococcus faecalis V583]
gi|257418646|ref|ZP_05595640.1| predicted protein [Enterococcus faecalis T11]
gi|61216623|sp|Q839B3.1|TILS_ENTFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|29342362|gb|AAO80128.1| conserved domain protein [Enterococcus faecalis V583]
gi|257160474|gb|EEU90434.1| predicted protein [Enterococcus faecalis T11]
Length = 462
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|422723121|ref|ZP_16779659.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2137]
gi|424671691|ref|ZP_18108682.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 599]
gi|315026779|gb|EFT38711.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2137]
gi|402357959|gb|EJU92647.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 599]
Length = 497
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|307286958|ref|ZP_07567033.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109]
gi|422702609|ref|ZP_16760438.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1302]
gi|306501904|gb|EFM71193.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109]
gi|315165845|gb|EFU09862.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1302]
Length = 497
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|229550496|ref|ZP_04439221.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC
29200]
gi|229304353|gb|EEN70349.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC
29200]
Length = 497
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|254455258|ref|ZP_05068687.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211]
gi|207082260|gb|EDZ59686.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211]
Length = 299
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 144/316 (45%), Gaps = 31/316 (9%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+ VSGGPDS+AL LT K ++ + F+ VDH LR S EA V
Sbjct: 1 MAVSGGPDSLALSFLT---KIYSLKKSLDVKYFL-------VDHRLRINSTIEAKSVQKL 50
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ + I I+ W +P++ ++Q +RD RY+L K + +I +L+ HH DD E
Sbjct: 51 LKNFYINLNIL--TWKGSKPEK-NIQSISRDKRYKLLIKKANKFRIKNILLGHHLDDLFE 107
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
F +R+ R SG+ GL + +Q ++ L+RPLL+ +K+D+ + +
Sbjct: 108 NFFIRILRGSGLNGLVSLDRETQ--------------RDTVNLIRPLLEINKNDLVYLSK 153
Query: 267 GGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVCSNL 325
+V DP+N + F R ++R + L K++L I + ++H
Sbjct: 154 YVFGSYVNDPSNENDKFKRVKVRNFINQLGLEGLDKNKLFLTIRNLKLANENIKHYVEEN 213
Query: 326 INEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYI 385
+ + +T++ +I + E +F S +L+ I ++ PVRG +L I
Sbjct: 214 LEKNITILSTKDKLILKKNFFSHSDEVVFRS--FTEILKIIGKKYYPVRGKKIDKILQSI 271
Query: 386 RTFPCKTSLTAAGCYL 401
+ LT GC +
Sbjct: 272 KA-KSSFKLTLGGCVI 286
>gi|424755712|ref|ZP_18183573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis R508]
gi|402408997|gb|EJV41443.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis R508]
Length = 497
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 137/304 (45%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R + L+ KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETRWEDLE---KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPS-KIEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|422700054|ref|ZP_16757910.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1342]
gi|315171404|gb|EFU15421.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1342]
Length = 497
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|307274227|ref|ZP_07555435.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855]
gi|306509189|gb|EFM78251.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855]
Length = 497
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|422728438|ref|ZP_16784856.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0012]
gi|315151132|gb|EFT95148.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0012]
Length = 497
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTQQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|307276452|ref|ZP_07557575.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134]
gi|306506932|gb|EFM76079.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134]
Length = 497
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|257088026|ref|ZP_05582387.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6]
gi|256996056|gb|EEU83358.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6]
Length = 462
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|255974763|ref|ZP_05425349.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2]
gi|255967635|gb|EET98257.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2]
Length = 462
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WKDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|384512171|ref|YP_005707264.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis OG1RF]
gi|327534060|gb|AEA92894.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus faecalis OG1RF]
Length = 497
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPS-KIEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|374992849|ref|YP_004968348.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus orientis DSM 765]
gi|357211215|gb|AET65833.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus orientis DSM 765]
Length = 470
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 126/280 (45%), Gaps = 31/280 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDSMAL + W+ + G G I + V HG+R+ES +E +V
Sbjct: 19 KVLVAVSGGPDSMALSHIL--WRYA--REEGHRGISI---ILTHVHHGVRKESDDEVTLV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + C + R D G QEAAR RY +++ ++ +L AHH
Sbjct: 72 QNMAKLWDLPCRVHRFDAKGYAKTVGRSFQEAARAWRYDRWKEDMVEEGCSLLATAHHLG 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE + RL R SG GL GM Y C ++RPLL F+K D+
Sbjct: 132 DQAETILFRLLRGSGTAGLGGM-----------YPCKGS-------IIRPLLGFTKADIL 173
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 322
+ C+ + D +N P++ RNRIR+ L ++ S +Q V+ + E
Sbjct: 174 QYCKREGIPFALDHSNEEPIYARNRIRLELLPELEKNYNSRIQEVLGRTGELLRWDEEYF 233
Query: 323 SNLINEAVT----VMDQGYAVIDLEILN-PSKIEDIFLSK 357
+N A + QG + +E+ + P+ I L K
Sbjct: 234 IGQVNAAWKRYFFLDSQGDVCLRIEVFDEPAAILSRLLRK 273
>gi|307268516|ref|ZP_07549891.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248]
gi|422708802|ref|ZP_16766323.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0027]
gi|422719767|ref|ZP_16776391.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0017]
gi|306515177|gb|EFM83717.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248]
gi|315032983|gb|EFT44915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0017]
gi|315036604|gb|EFT48536.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0027]
Length = 497
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPS-KIEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETLAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|256960614|ref|ZP_05564785.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96]
gi|257417629|ref|ZP_05594623.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ARO1/DG]
gi|256951110|gb|EEU67742.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96]
gi|257159457|gb|EEU89417.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ARO1/DG]
Length = 462
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|422695389|ref|ZP_16753375.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4244]
gi|315147115|gb|EFT91131.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4244]
Length = 497
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|256855217|ref|ZP_05560578.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Enterococcus faecalis T8]
gi|256709730|gb|EEU24777.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Enterococcus faecalis T8]
Length = 500
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 38 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 87
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 88 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 144
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 145 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 195
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 196 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 250
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 251 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 310
Query: 360 ALVL 363
L
Sbjct: 311 QKTL 314
>gi|422686426|ref|ZP_16744623.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4000]
gi|315028818|gb|EFT40750.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4000]
Length = 497
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|256618326|ref|ZP_05475172.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200]
gi|421512577|ref|ZP_15959380.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 29212]
gi|256597853|gb|EEU17029.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200]
gi|401674265|gb|EJS80620.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 29212]
Length = 462
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|256762058|ref|ZP_05502638.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3]
gi|256964186|ref|ZP_05568357.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704]
gi|256683309|gb|EEU23004.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3]
gi|256954682|gb|EEU71314.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704]
Length = 462
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|260576641|ref|ZP_05844628.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2]
gi|259021126|gb|EEW24435.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2]
Length = 422
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 130/280 (46%), Gaps = 39/280 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL--LAITVDHGLREESKEEANI 142
+ L VSGG DSMAL L GL A+TVDHGLR ES EA
Sbjct: 33 LGLAVSGGGDSMALLHLA----------------VAAGLPCRAVTVDHGLRAESAAEAAG 76
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ + + + + +R DGR G+LQ+ AR RY L + + H I + + H+ D
Sbjct: 77 VARACAALAVPHDTLRWQGWDGR---GNLQDQARRARYALIAEWALAHGIAAVALGHNRD 133
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D AE +LRL+R +GV GLA MA ++ + +RPLL+ + ++
Sbjct: 134 DVAETLLLRLARGAGVDGLAAMAARR--------------RHQGVNWLRPLLEIGRGELR 179
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHV 321
G WV+DP+N + F R R+R + G L++ +E L V + R+ +E V
Sbjct: 180 DWLAGRGVVWVDDPSNDNARFDRVRLRQAAGTLAALGLTTERLAEVAGHLAQVRAALE-V 238
Query: 322 CSNLINEAVTVMDQGYAVIDLEILN--PSKIEDIFLSKFL 359
+ ++ G VID L+ P +I L+ L
Sbjct: 239 QTRDAARKYARIEAGDVVIDPAALHDLPEEIARRLLASAL 278
>gi|430362598|ref|ZP_19427142.1| PP-loop family protein [Enterococcus faecalis OG1X]
gi|430368657|ref|ZP_19428338.1| PP-loop family protein [Enterococcus faecalis M7]
gi|429512112|gb|ELA01731.1| PP-loop family protein [Enterococcus faecalis OG1X]
gi|429516101|gb|ELA05596.1| PP-loop family protein [Enterococcus faecalis M7]
Length = 462
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|257084199|ref|ZP_05578560.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1]
gi|256992229|gb|EEU79531.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1]
Length = 462
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|256956808|ref|ZP_05560979.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5]
gi|257078478|ref|ZP_05572839.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus
faecalis JH1]
gi|294779311|ref|ZP_06744714.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1]
gi|256947304|gb|EEU63936.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5]
gi|256986508|gb|EEU73810.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus
faecalis JH1]
gi|294453597|gb|EFG21996.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1]
Length = 462
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPS-KIEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETLAYQHFFLTAFFQKTL 276
>gi|326434347|gb|EGD79917.1| hypothetical protein PTSG_10199 [Salpingoeca sp. ATCC 50818]
Length = 666
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 84/176 (47%), Gaps = 12/176 (6%)
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
D L A+ VDH LR ES EEA+ V+ + G+ + W R H QE AR RY
Sbjct: 14 DRLRAVIVDHRLRHESTEEAHQVAAYLQGQGVAAHVEHLAW---RVNDKHTQEMARHKRY 70
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
H ++ HHADD AE +LR R S V GLA M ++ ++A+
Sbjct: 71 HALGHAATTHGCRHIMTGHHADDVAETLVLRCLRQSSVHGLAAMREVQPLYYAHAFE--- 127
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPL-FVRNRIRMSLGDL 295
+LL RPLL K ++ C+ WVEDPTNR + RN IR +L L
Sbjct: 128 -----PLLLTRPLLAVGKRELELYCRDNGIWWVEDPTNRDATKYTRNSIRHALAAL 178
>gi|414341362|ref|YP_006982883.1| hypothetical protein B932_0343 [Gluconobacter oxydans H24]
gi|411026697|gb|AFV99951.1| hypothetical protein B932_0343 [Gluconobacter oxydans H24]
Length = 412
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 128/302 (42%), Gaps = 44/302 (14%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + L VSGG DS+AL +L W+ +LA VDH LR ES EA
Sbjct: 31 PEAPVGLAVSGGGDSLALALLARRWRRH--------------VLAFVVDHALRPESGAEA 76
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ R+ MGI+ ++ L PK G LQE ARD R+ + C++ LL+AHH
Sbjct: 77 YLTVERLEAMGIKARVLT---LAPFPK-GRLQERARDARFEALEAACVEAGCLDLLVAHH 132
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DQ E +R SG GLAGM ++ L+ I +VRP L D
Sbjct: 133 LHDQDETVWMRHHAGSGPRGLAGMEMTT-------------LRGR-IRIVRPCLTLHPDR 178
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH 320
+ + W+EDP+N++ F R R R DLSS + ISA S +
Sbjct: 179 LRATLRSEGLAWIEDPSNQNRRFERVRWRQ---DLSSTQRDQAREWQISAQGLRHSEEDE 235
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
+ L AV + L P E + S AL+ +R RP R L
Sbjct: 236 LARVLAKSAV------WHPAGWVHLAP---EGVCESTLPALIRLVSGRRYRPSREQVQAL 286
Query: 381 LL 382
+L
Sbjct: 287 VL 288
>gi|422706372|ref|ZP_16764073.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0043]
gi|422726409|ref|ZP_16782856.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0312]
gi|315156267|gb|EFU00284.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0043]
gi|315158588|gb|EFU02605.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0312]
Length = 497
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VIAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|448117252|ref|XP_004203210.1| Piso0_000811 [Millerozyma farinosa CBS 7064]
gi|359384078|emb|CCE78782.1| Piso0_000811 [Millerozyma farinosa CBS 7064]
Length = 490
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 13/194 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DSM L L + W A ++ GL AIT+DH R+ES EA ++
Sbjct: 24 LCIALSGGVDSMCLTYLLSRW----------AKKYRVGLKAITIDHSYRKESANEAALIG 73
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
V ++ E+ + ++ + +E AR RY +F +VC + +AH DDQ
Sbjct: 74 RCVEKWCVQHEVHKIEYGTDIKSITNFEEVARTRRYEIFDRVCRVSNASHICVAHTLDDQ 133
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E F+ RL NS + GLAG+ + I C + ++RPLL+F K D+
Sbjct: 134 LETFVQRLRHNSSLFGLAGLREVANIPLP---ECAPARVRSPVRVIRPLLEFCKADLVAT 190
Query: 265 CQGGNRDWVEDPTN 278
C+ W ED TN
Sbjct: 191 CKENGVKWFEDYTN 204
>gi|427427983|ref|ZP_18918025.1| tRNA(Ile)-lysidine synthetase [Caenispirillum salinarum AK4]
gi|425882684|gb|EKV31363.1| tRNA(Ile)-lysidine synthetase [Caenispirillum salinarum AK4]
Length = 480
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 84/156 (53%), Gaps = 17/156 (10%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
+LA+TVDHGLR E+ EEA V R++ GI I+ + G ++Q AR +RYRL
Sbjct: 70 VLALTVDHGLRPEAAEEARAVGRRLAARGIDHAILTNE---GPAPHANVQAEARGLRYRL 126
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ C I LL AHH +DQAE +LRL R SG+ GL+ MA +++ +
Sbjct: 127 LLERCRGEGILHLLTAHHREDQAETLLLRLGRGSGLRGLSAMAPVAEMAEAR-------- 178
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278
++RPLLD + + C G WV+DP+N
Sbjct: 179 ------VLRPLLDVPRASLSATCAGAGVKWVDDPSN 208
>gi|255971763|ref|ZP_05422349.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1]
gi|257421552|ref|ZP_05598542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98]
gi|255962781|gb|EET95257.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1]
gi|257163376|gb|EEU93336.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98]
Length = 462
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVIAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|374578803|ref|ZP_09651897.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus youngiae DSM
17734]
gi|374414885|gb|EHQ87320.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus youngiae DSM
17734]
Length = 470
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 42/343 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGGPDSMAL L W+ + Q E+ + +L V HG+R ES EA +V
Sbjct: 19 RVMVAVSGGPDSMALSHLL--WR---YTQE-ESSRGVSIVLT-HVHHGVRRESDAEAVMV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ C + R + G QEAAR+ RY +++ ++ +L AHH
Sbjct: 72 QDMAKKWNVPCLVHRFNAKRYAESMGQSFQEAAREWRYARWKEDMLKEGCSLLATAHHLG 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE + RL R SG GLAGM S ++RPLL F+K D+
Sbjct: 132 DQAETILYRLLRGSGTAGLAGMYPSKGS------------------IIRPLLSFTKADIL 173
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC----RRTRSYV 318
C + D +N+ P++VRNRIR+ L S+ S +Q + R Y+
Sbjct: 174 NYCAREAVPYALDDSNQEPVYVRNRIRLELLPELERSYNSRIQETLGRTGELLRWDEEYI 233
Query: 319 EHVCSNLINEAVTVMDQGYAVIDLEILN-PSKIEDIFLSKFLALVLQFICQRQRPVRGST 377
++ QG + L++ P+ I LS+ L + Q R + +
Sbjct: 234 TRQVKAAWDQYHYQDSQGTICLKLDVFKEPAAI----LSRLLRKAAMQVTQEPRGLGFTY 289
Query: 378 SKLLLH------YIRTFP-CKTSLTAAGCYLCPTPGSRGTKAL 413
+++ + + P + LT G C + G KAL
Sbjct: 290 VAMIMAAQGKPGWSQDLPGMRVKLTDEGLQFCRSHIDAGQKAL 332
>gi|254475444|ref|ZP_05088830.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11]
gi|214029687|gb|EEB70522.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11]
Length = 383
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 134/293 (45%), Gaps = 28/293 (9%)
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGLR+ S +EA +V+ + +G+ +++ +W D RP+ G+LQ+ AR+ RY L
Sbjct: 22 TVDHGLRDGSHDEAMMVAAEAAKLGLSHDVL--EWRD-RPEGGNLQDEARNARYGLLTNW 78
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + V+ + H ADDQAE ++RL R SGV GL+ M +
Sbjct: 79 ARINDLSVIALGHTADDQAETLLMRLGRASGVSGLSAMPRMRAM--------------DG 124
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQ 305
+ L+RPLLD ++D + + WV+DP+N F R RIR ++ L+ E L
Sbjct: 125 VSLMRPLLDVTRDQLRAYLRKKQVAWVDDPSNEDTRFERIRIRQAMASLAPIGLTVERLA 184
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQF 365
AV R ++ E + + D G VID + D + L +Q+
Sbjct: 185 AVAQNLGAAREALDWYTFLAAREMLEIRD-GAIVIDQREFR--TLPDEIAHRLLVRAVQW 241
Query: 366 ICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSI 418
+ P R ++ RT S T AGC + +R K +C +
Sbjct: 242 VGGAVYPPR---RDPMMQAQRTARQGGSFTLAGCRIL----TRVQKVWICREV 287
>gi|422738815|ref|ZP_16794002.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2141]
gi|315145393|gb|EFT89409.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2141]
Length = 497
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VIAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPS-KIEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|89053469|ref|YP_508920.1| tRNA(Ile)-lysidine synthetase-like protein [Jannaschia sp. CCS1]
gi|88863018|gb|ABD53895.1| tRNA(Ile)-lysidine synthetase-like protein [Jannaschia sp. CCS1]
Length = 422
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 41/289 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IAL VSGG DSMA+ L GW A + GL +TVDHGLR S++EA +V+
Sbjct: 25 IALAVSGGGDSMAMLTLAHGW----------ARVYGVGLHVVTVDHGLRSASRQEAEMVA 74
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ +G ++ W QG+LQ+AAR R RL + QI +L AH DDQ
Sbjct: 75 KECAVLGHPHTTLKWQW----DNQGNLQDAAR--RARLSLIGAWRGQIAHVLFAHTRDDQ 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RL R SGV GL+ MA + D+ + +RPLL ++ D+
Sbjct: 129 AETMLMRLLRGSGVDGLSAMAETR------------DMDGWQV--IRPLLSETRADLRHY 174
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA-CRRTRSYVEHVCS 323
+V+DP+N F R R+R G + + + A +A R R+ +E
Sbjct: 175 ADVLRVPYVDDPSNEDETFDRVRLR---GTIKALGMDTRALANTAARMGRARTALEARAV 231
Query: 324 NLINEAVT-----VMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFIC 367
++ VT M G +ID + +++E + LA LQ++
Sbjct: 232 DVARACVTEDRWEWMPTGDLLIDRDRF--AEVEPDTQLRVLAGALQWVT 278
>gi|300861978|ref|ZP_07108058.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11]
gi|428765884|ref|YP_007151995.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis str. Symbioflor
1]
gi|295112548|emb|CBL31185.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
synthetase, C-terminal domain [Enterococcus sp. 7L76]
gi|300848503|gb|EFK76260.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11]
gi|427184057|emb|CCO71281.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis str. Symbioflor
1]
Length = 462
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVIAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|374605069|ref|ZP_09678012.1| tRNA(Ile)-lysidine synthetase [Paenibacillus dendritiformis C454]
gi|374389339|gb|EHQ60718.1| tRNA(Ile)-lysidine synthetase [Paenibacillus dendritiformis C454]
Length = 539
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 138/309 (44%), Gaps = 41/309 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
RI + VSGGPDSM L A TG +G+ ++ V HG R +ES EEA
Sbjct: 40 RIVIAVSGGPDSMLLLHAIAA-LTGHRPGSGQ-------IIIAHVHHGFRPQESDEEARF 91
Query: 143 VSHRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V +GIR + R D W + + Q AAR +RY ++V + Q ++ +AH
Sbjct: 92 VEREAERLGIRVAMKRVDAPGW--AAEHKMNAQAAARQLRYDFLKEVAAREQAPIIALAH 149
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
HADDQAE ++RL R +G GL+GMA+ + + +S VRPLL K
Sbjct: 150 HADDQAETVLMRLLRGTGSTGLSGMAWKRE---ADGFS-----------FVRPLLGVRKA 195
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISACRRTRS 316
++ + C+ +V D +N ++RNR+R+ + + + + L R
Sbjct: 196 ELLEWCRLRGIAYVTDSSNAKTDYLRNRVRLDVMPQLEQENPGLVASLCRTADVLREEND 255
Query: 317 YVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 376
++E L V + G V + S + + L + L QR+
Sbjct: 256 WIEEQARQLFQCVVKTVKDGEDV----PMESSPPDGVVLDRRALLQAHVALQRR------ 305
Query: 377 TSKLLLHYI 385
KL+L+Y+
Sbjct: 306 LIKLILNYL 314
>gi|66800145|ref|XP_628998.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4]
gi|60462365|gb|EAL60586.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4]
Length = 665
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 141/318 (44%), Gaps = 44/318 (13%)
Query: 50 KCSHAHA---VEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWK 106
K S A A + + + M +++ F M + + +GVSGG DSM L L W
Sbjct: 137 KISEAKARPDIFFDSKMIEFK--FQEFMNTLTISNKSTLVIGVSGGSDSMVLLYLLKNWC 194
Query: 107 TGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM----------GIRCEI 156
G +N + IT+DH + E+ +S ++ + I+ ++
Sbjct: 195 IG---ENSANVNRKLKITVITIDHKMTNPVAEDIPYISKIINQLINNDNNSNFIKIKHKV 251
Query: 157 VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS 216
V D + R KQ Q + R+ R + + + ++ + +DQ E FI R+++NS
Sbjct: 252 VEID--EQRCKQ---QVSLRNQRIEILMSESVGNGNNLIFYGTNLNDQMETFIQRINKNS 306
Query: 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDP 276
G+ GLA M ++I ++ HS+LLVRPLLDFSK ++ C + + DP
Sbjct: 307 GLDGLAAMTKITKISNT-----------HSVLLVRPLLDFSKLEILDFCSERSIQYFNDP 355
Query: 277 TNRSPL-FVRNRIRMSLGDLSSCSFKSELQAVI---------SACRRTRSYVEHVCSNLI 326
TN P+ + RN+ R L D S +S L I + R + + V ++
Sbjct: 356 TNDDPVSYSRNKTRHQLRDFKEFSIESPLSTTINLKQFLSGLTPIRMIKDQTDKVLQKML 415
Query: 327 NEAVTVMDQGYAVIDLEI 344
N+ + + + + DL +
Sbjct: 416 NDILELNEHKNNIRDLRL 433
>gi|319781030|ref|YP_004140506.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166918|gb|ADV10456.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 457
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
LLA+T+DHGLR S EA V+ + +GI I+ W +P G L AAR+ RYRL
Sbjct: 52 LLAVTIDHGLRSGSAAEAQTVAKLCARLGISHRIL--TWSGPKPSTG-LPAAAREARYRL 108
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ IG++L H ADDQAE ++R +R++G G AGMA A L
Sbjct: 109 LAEAAQAEGIGMILTGHTADDQAETVLMRHARDAGQ-GHAGMA-----GRGLAGMAPATL 162
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ I +VRPLL + + + + N W +DPTN F R R+R +L
Sbjct: 163 YDWRIWIVRPLLGVRRAVLRDVLRRQNVGWADDPTNVDAAFERPRVRAAL 212
>gi|406859202|gb|EKD12271.1| PP-loop family protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 595
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 108/248 (43%), Gaps = 43/248 (17%)
Query: 85 IALGVSGGPDSMALCVLTA---GWKTGGFNQNGEAGEFIDGL--LAITVDHGLREESKEE 139
I L +SGG DSMAL L + KT +Q + + + A VDHG+R S E
Sbjct: 43 IGLAISGGVDSMALAFLCSRLKELKTAAADQPDPKHDILSSVKFQAFVVDHGVRRGSDLE 102
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A VS + GI ++++ W + + + + AR R+R + C + IG L +AH
Sbjct: 103 AQAVSKLLERQGIPTDVLKIQWPEDATLKLNFESLARKYRFRTLGQACSERGIGSLFLAH 162
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCH-----DD------------ 241
H DDQAE ++RL GL G+ S+I Y + H DD
Sbjct: 163 HEDDQAETVMMRLVAGHRSKGLMGIKEHSEIPECYGIHGVHESGGIDDPRMRWSEGPPAS 222
Query: 242 -------------------LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR-SP 281
+N + + RPLL FSK + CQG + +W ED TNR
Sbjct: 223 APEVEDHERGTLASRPQLLTENGGVRVYRPLLAFSKQQLTATCQGNSVEWFEDHTNRDQT 282
Query: 282 LFVRNRIR 289
L RN IR
Sbjct: 283 LTKRNAIR 290
>gi|192289726|ref|YP_001990331.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1]
gi|192283475|gb|ACE99855.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1]
Length = 346
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 113/244 (46%), Gaps = 28/244 (11%)
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
TD +RR+ A K I L VSGGPDS+AL L A W+ + G A
Sbjct: 4 TDHEAVSATEARRL-FADWKAAPAIVLAVSGGPDSLALMWLAARWRKS--LKQGPA---- 56
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
L +TVDHGLR E+ EA V + + + +R W +P G +Q AAR RY
Sbjct: 57 --LAVVTVDHGLRPEAAAEARAVKRLAASLDLPHRTLR--WSGDKPSTG-IQAAARGARY 111
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
RL ++ AH DDQAE ++RLSR SG+ GLA MA
Sbjct: 112 RLLANAAKTLGASHVMTAHTRDDQAETVLMRLSRGSGIAGLAAMA--------------R 157
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS--C 298
+++ ++L RPLLD K + + DP+N P F R R+R + L++ C
Sbjct: 158 EIERDGVVLARPLLDVPKARLIATLAKARIAFATDPSNADPRFTRPRLRELMPQLAAEGC 217
Query: 299 SFKS 302
+S
Sbjct: 218 DARS 221
>gi|328354033|emb|CCA40430.1| hypothetical protein PP7435_Chr4-0255 [Komagataella pastoris CBS
7435]
Length = 517
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 18/216 (8%)
Query: 81 PH---HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
PH R+ + +SGG DSMAL L + ++ +N E ++A+TV+H R+ S+
Sbjct: 18 PHGLPRRVGISLSGGVDSMALTSLLSRYR-DEYNVGVE-------IVALTVNHEYRKGSR 69
Query: 138 EEANIVSHRVSDMGIRCEIVRCDW-LDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+EA V V+ + ++ +I+ W LD + G+ + AR RY+ QK C + I
Sbjct: 70 QEAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQH 129
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L + H +DQ E F+LRL +NS + G+ M I S + + I +VRP+L
Sbjct: 130 LFLGHQLEDQVETFLLRLKQNSTIFGMRCMK---DISSYPSLPLYPSSVKPPIKIVRPML 186
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNR-SPLFVRNRIR 289
+ K D+Y C+ W ED TN S L RN +R
Sbjct: 187 NIRKKDIYSYCRELEVPWFEDHTNTDSSLTFRNLMR 222
>gi|312952663|ref|ZP_07771527.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102]
gi|422691662|ref|ZP_16749691.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0031]
gi|310629451|gb|EFQ12734.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102]
gi|315153553|gb|EFT97569.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0031]
Length = 497
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 31/304 (10%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VIAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYDFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFL 359
++ + + R + +++ ++EAV QG+ + +L + + FL+ F
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFF 307
Query: 360 ALVL 363
L
Sbjct: 308 QKTL 311
>gi|219666213|ref|YP_002456648.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2]
gi|219536473|gb|ACL18212.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2]
Length = 472
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 125/266 (46%), Gaps = 30/266 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ P RI VSGGPDS+AL + W+ + Q+ + + L+ V HG+REES +
Sbjct: 14 IAPGSRILAAVSGGPDSVALAHIL--WR---YIQDKQEQKIT--LVITHVHHGVREESDD 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLI 197
E +V + D I C I R D + G Q AAR+ RY +Q+ + +L
Sbjct: 67 EEKMVQNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLAT 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHH DQAE + RL R SG GLAG I+ L+RPLL +
Sbjct: 127 AHHLGDQAETVLYRLLRGSGTAGLAG------IYPQKGK------------LIRPLLTVT 168
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 317
K+D+ + C+ + D +N P++VRN+IR+ L + + +I A RT +
Sbjct: 169 KEDILEYCRNEKLPYALDHSNEEPIYVRNKIRLQLLPELQREYNPK---IIEALGRT-AE 224
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLE 343
V + E V + +A++D E
Sbjct: 225 VLRWDEEYLEEEVQSAWKRWAILDTE 250
>gi|257081551|ref|ZP_05575912.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol]
gi|256989581|gb|EEU76883.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol]
Length = 462
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVVEKEQL--QLVVAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + R + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|84501655|ref|ZP_00999827.1| PP-loop family protein [Oceanicola batsensis HTCC2597]
gi|84390276|gb|EAQ02835.1| PP-loop family protein [Oceanicola batsensis HTCC2597]
Length = 414
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 33/239 (13%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + + VSGG DS+AL L W +G +G A L A+TVDHGLR +S EA
Sbjct: 17 PAGPLGVAVSGGSDSLALLHLLHDWASG----SGLA------LHAVTVDHGLRADSAAEA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V +G+ ++ DG G+L + AR RY L + + + + H
Sbjct: 67 ACVGEIAGRLGVPHTVLHWTGWDG---AGNLSDRARRARYDLMAEWARGAGVAGIALGHT 123
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS-ILLVRPLLDFSKD 259
ADDQAE ++RL+R SGV GLA M+ ++H+ + +RPLL +
Sbjct: 124 ADDQAETLLMRLARGSGVAGLAAMSPG---------------RSHAGVTFLRPLLTVRRA 168
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE----LQAVISACRRT 314
++ + ++ W+EDPTN F R + R +L +L E + ++A R+T
Sbjct: 169 ELRRYLDARDQKWIEDPTNEDMRFDRPKARRALRELEPLGLTVEALNMVAGNMAALRKT 227
>gi|453330638|dbj|GAC87384.1| cell cycle protein MesJ [Gluconobacter thailandicus NBRC 3255]
Length = 412
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 128/302 (42%), Gaps = 44/302 (14%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + L VSGG DS+AL +L W+ +LA VDH LR ES EA
Sbjct: 31 PEAPVGLAVSGGGDSLALALLARRWRRH--------------VLAFVVDHALRPESGAEA 76
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ R+ MGI+ ++ L PK G LQE ARD R+ + C++ LL+AHH
Sbjct: 77 YLTVERLEAMGIKARVLT---LAPFPK-GRLQERARDARFEALEAACVEAGCLDLLVAHH 132
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DQ E +R SG GLAGM ++ L+ I +VRP L D
Sbjct: 133 LHDQDETVWMRHHAGSGPRGLAGMEMTT-------------LRGR-IRIVRPCLTLHPDR 178
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH 320
+ + W+EDP+N++ F R R R DLSS + ISA S +
Sbjct: 179 LRATLRSEGLAWIEDPSNQNRRFERVRWRQ---DLSSTQRDQAREWQISAQGLRHSEEDE 235
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
+ L AV + L P + + L + LV +R RP R L
Sbjct: 236 LARVLAKSAV------WHPAGWVHLAPEGVCESTLPPLIRLV---SGRRYRPSREQVQAL 286
Query: 381 LL 382
+L
Sbjct: 287 VL 288
>gi|145254700|ref|XP_001398711.1| PP-loop family protein [Aspergillus niger CBS 513.88]
gi|134084294|emb|CAK43181.1| unnamed protein product [Aspergillus niger]
Length = 645
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 107/257 (41%), Gaps = 54/257 (21%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ L +SGG DSMAL L W+ + E + A VDH REES EAN+V
Sbjct: 47 RLGLAISGGADSMALAYLCKQWERTQTQTSDEK----TSVTAFVVDHKAREESTREANMV 102
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ--GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + DMG++ +I+ W P + AR +R++ + C H I LL+ HH
Sbjct: 103 AGWLDDMGLQTQILPLTW----PSHHISAFETHARRLRFQALGQACRAHSIETLLMGHHQ 158
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQI------------------------------- 230
DD E + RL + GLAG+ ++I
Sbjct: 159 DDNVETTLWRLCTGARGAGLAGIPAVTRIPECHGLFGVAESGSSITLLKPGNSDYRIKTT 218
Query: 231 --------FSSYAYSCHDDLK----NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278
SS + H K I + RPLL F K ++ C+ N +VEDPTN
Sbjct: 219 NTNELKLTGSSSNTTQHQQTKYKIATGGISIARPLLAFPKQNLLATCKANNIPYVEDPTN 278
Query: 279 RSP-LFVRNRIRMSLGD 294
P L RN IR L +
Sbjct: 279 FDPTLTPRNAIRSLLAE 295
>gi|423072895|ref|ZP_17061641.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DP7]
gi|361856314|gb|EHL08229.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DP7]
Length = 472
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 125/266 (46%), Gaps = 30/266 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ P RI VSGGPDS+AL + W+ + Q+ + + L+ V HG+REES +
Sbjct: 14 IAPGSRILAAVSGGPDSVALAHIL--WR---YIQDKQEQKIT--LVITHVHHGVREESDD 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLI 197
E +V + D I C I R D + G Q AAR+ RY +Q+ + +L
Sbjct: 67 EEKMVQNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLAT 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHH DQAE + RL R SG GLAG I+ L+RPLL +
Sbjct: 127 AHHLGDQAETVLYRLLRGSGTAGLAG------IYPQKGK------------LIRPLLTVT 168
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 317
K+D+ + C+ + D +N P++VRN+IR+ L + + +I A RT +
Sbjct: 169 KEDILEYCRNEKLPYALDHSNEEPVYVRNKIRLQLLPELQREYNPK---IIEALGRT-AE 224
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLE 343
V + E V + +A++D E
Sbjct: 225 VLRWDEEYLEEEVQSAWKRWAILDTE 250
>gi|312901065|ref|ZP_07760354.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470]
gi|311291811|gb|EFQ70367.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470]
Length = 497
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 43/310 (13%)
Query: 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL 123
T + + + R +PH I + VSGG DSMAL L Q E + L
Sbjct: 35 TMFWQFYKRGKEQGFWQPHQTIVVAVSGGVDSMALFTL--------MEQVAEKEQL--QL 84
Query: 124 LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLF 183
+ V+H LRE S +EA ++ + R W D KQ +L+ AR RY F
Sbjct: 85 VVAHVNHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYDFF 141
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++V VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 142 KEVMEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE--- 192
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSF 300
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F
Sbjct: 193 -----LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQF 247
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKI-------EDI 353
++ + + R + +++ ++EAV QG+ NP ++ +
Sbjct: 248 LDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGWR------FNPKRLLKETPAYQHF 301
Query: 354 FLSKFLALVL 363
FL+ F L
Sbjct: 302 FLTAFFQKTL 311
>gi|89892946|ref|YP_516433.1| hypothetical protein DSY0200 [Desulfitobacterium hafniense Y51]
gi|89332394|dbj|BAE81989.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 472
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 125/266 (46%), Gaps = 30/266 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ P RI VSGGPDS+AL + W+ + Q+ + + L+ V HG+REES +
Sbjct: 14 IAPGSRILAAVSGGPDSVALAHIL--WR---YIQDKQEQKIT--LVITHVHHGVREESDD 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLI 197
E +V + D I C I R D + G Q AAR+ RY +Q+ + +L
Sbjct: 67 EEKMVQNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLAT 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHH DQAE + RL R SG GLAG I+ L+RPLL +
Sbjct: 127 AHHLGDQAETVLYRLLRGSGTAGLAG------IYPQKGK------------LIRPLLTVT 168
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 317
K+D+ + C+ + D +N P++VRN+IR+ L + + +I A RT +
Sbjct: 169 KEDILEYCRNEKLPYALDHSNEEPVYVRNKIRLQLLPELQREYNPK---IIEALGRT-AE 224
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLE 343
V + E V + +A++D E
Sbjct: 225 VLRWDEEYLEEEVQSAWKRWAILDTE 250
>gi|384157680|ref|YP_005539753.1| tRNA(Ile)-lysidine synthetase [Bacillus amyloliquefaciens TA208]
gi|384162473|ref|YP_005543852.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens LL3]
gi|328551768|gb|AEB22260.1| tRNA(Ile)-lysidine synthetase [Bacillus amyloliquefaciens TA208]
gi|328910028|gb|AEB61624.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens LL3]
Length = 472
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGKSSVI---IAAHVDHQFRGSESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFKDLMAKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM Q +A S LL+RP L +KD++
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGM----QPVREFA----------SGLLIRPFLYAAKDEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 174 LEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QSLTKERMNKVIT 246
>gi|308171958|ref|YP_003918663.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7]
gi|384166695|ref|YP_005548073.1| hypothetical protein BAXH7_00072 [Bacillus amyloliquefaciens XH7]
gi|307604822|emb|CBI41193.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7]
gi|341825974|gb|AEK87225.1| hypothetical protein BAXH7_00072 [Bacillus amyloliquefaciens XH7]
Length = 486
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 34 IIAGVSGGPDSMALLSM--------LNKHFGKSSVI---IAAHVDHQFRGSESEEDMKFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 83 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFKDLMAKHQAKFLALAHHG 141
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM Q +A S LL+RP L +KD++
Sbjct: 142 DDQVETMLMRLAKGTLGAGLAGM----QPVREFA----------SGLLIRPFLYAAKDEI 187
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 188 LEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYL 247
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 248 QSLTKERMNKVIT 260
>gi|452854130|ref|YP_007495813.1| tRNAile lysidine synthetase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452078390|emb|CCP20140.1| tRNAile lysidine synthetase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 472
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 115/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM + S + L+RPLL +KD++
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGW--------------LIRPLLYAAKDEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 174 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTEDEQYL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QSLTKERMNKVIT 246
>gi|421859844|ref|ZP_16292034.1| predicted ATPase [Paenibacillus popilliae ATCC 14706]
gi|410830605|dbj|GAC42471.1| predicted ATPase [Paenibacillus popilliae ATCC 14706]
Length = 525
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 139/309 (44%), Gaps = 41/309 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
RI + VSGGPDSM L A G E ++ V HG R +ES EEA
Sbjct: 38 RIVIAVSGGPDSMLLLHAIAA--LIGHQPGSER------MIIAHVHHGFRPQESDEEARF 89
Query: 143 VSHRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V +GIR + R D W + + Q AAR +RY ++V + Q V+ +AH
Sbjct: 90 VEREAERLGIRLAMERVDAPGW--AVEHKMNAQAAARQLRYDFLKEVAAREQASVIALAH 147
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
HADDQAE ++RL R +G GL+GMA++ + + +S VRPLL K
Sbjct: 148 HADDQAETVLMRLLRGTGSTGLSGMAWNRE---ADGFS-----------FVRPLLGVRKA 193
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISACRRTRS 316
++ + C+ +V D +N ++RNR+R+ + + + + L R
Sbjct: 194 ELVEWCRLRGIAYVTDSSNAKTDYLRNRVRLDVMPRLEQENPGLVASLCRTADVLREEND 253
Query: 317 YVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 376
++E ++ G V + +PS ++ + L + L + QR+
Sbjct: 254 WMEEQARQWFQRVARIVKDGEGV---PMESPS-LDGVVLDRRALLQVHVALQRR------ 303
Query: 377 TSKLLLHYI 385
KL+L+Y+
Sbjct: 304 LIKLILNYL 312
>gi|407451693|ref|YP_006723417.1| ATPase of the PP-loop superfamily implicated in cell cycle control
[Riemerella anatipestifer RA-CH-1]
gi|403312677|gb|AFR35518.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Riemerella anatipestifer RA-CH-1]
Length = 427
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 128/266 (48%), Gaps = 44/266 (16%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEEA 140
H+ L VSGG DSMAL L ID + I +++ LR E+S ++A
Sbjct: 21 HQFLLAVSGGADSMALAHLMTQ---------------IDAKIEIAHINYKLRGEDSDKDA 65
Query: 141 NIVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+V I C I+ D +P G +Q AR++RY+ F+ + + L+ A
Sbjct: 66 ALVQEFCEKHHIPFHCYIISEK--DQKP-SGSIQLWARELRYQFFRNIMKTRNLSYLVTA 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH +DQ E FI+ LSR SG+ GLAG+ N+ ++RPLLDFSK
Sbjct: 123 HHLNDQLETFIINLSRGSGIKGLAGIP------------------NNENEILRPLLDFSK 164
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS-LGDLSSCS--FKSELQAVISACRRTR 315
+++Y + + + ED +N+ ++RN+IR S + +L + F + I + +
Sbjct: 165 EEIYHFAEAYSIAFREDKSNQKQDYLRNKIRHSVVPNLEEINPDFLDNFRKSIDFLSKAK 224
Query: 316 SYVEHVCSNLINEAVTVMDQGYAVID 341
S++ + I E +++ + +ID
Sbjct: 225 SFINQQIKDKIKE-ISISTESETIID 249
>gi|85714373|ref|ZP_01045361.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A]
gi|85698820|gb|EAQ36689.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A]
Length = 337
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
++ A K + L VSGGPDSMAL L A W++ A L+A+TVDHGL
Sbjct: 9 KLLFADWKGERALVLAVSGGPDSMALMWLAARWRS--------AMTRGPDLIAVTVDHGL 60
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R S EA V + + +G+ +R W +P+ G L AAR RYRL + +
Sbjct: 61 RRGSAREARDVKNLATSLGVTHRTLR--WSGAKPESG-LPAAARAARYRLLARTARANGA 117
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
+L AH DDQAE ++R+SR SG+ GL+ MA + +L RP
Sbjct: 118 SHILTAHTRDDQAETVLMRISRGSGIAGLSAMARETM--------------RDGFILARP 163
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+ K + + D+VEDPTNR F R R+R
Sbjct: 164 FLNVPKSRLIATLKKAKIDYVEDPTNRDLNFTRPRLR 200
>gi|357030737|ref|ZP_09092681.1| hypothetical protein GMO_03810 [Gluconobacter morbifer G707]
gi|356415431|gb|EHH69074.1| hypothetical protein GMO_03810 [Gluconobacter morbifer G707]
Length = 393
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 119/270 (44%), Gaps = 36/270 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DSMAL L W+ ++A VDH LR S EEA +
Sbjct: 16 VGLAVSGGGDSMALAWLARRWRRH--------------VVAFVVDHALRASSAEEARLTV 61
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ +GIR ++ LD P G +QE AR+ R+ ++ C+Q LL+AHHA DQ
Sbjct: 62 ARLEALGIRARLLT---LDAFPA-GRMQERAREARFAALEQACVQEGCLDLLVAHHAHDQ 117
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E +R S LGL GMA S+ I + LVRPLL + + +
Sbjct: 118 DETVWMRCEGGSTPLGLIGMA-SAAI-------------RGRLRLVRPLLSLAPERLRAT 163
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSN 324
+ + W+EDP+N + F R R R L + +S + + R R + V +
Sbjct: 164 LRAHDVSWIEDPSNLNRRFERVRWRQDLTERQRIDGRSLREEAV----RFRREHDVVLAK 219
Query: 325 LINEAVTVMDQGYAVIDLEILNPSKIEDIF 354
L+ G+ + E + P + +
Sbjct: 220 LLANHARWHPAGWIFLSEEGMVPKALAPLI 249
>gi|326402603|ref|YP_004282684.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301]
gi|325049464|dbj|BAJ79802.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301]
Length = 389
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 124/270 (45%), Gaps = 45/270 (16%)
Query: 76 MAGLKPHH---RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
MA L P R+A+GVSGG DSMAL +L A W + G+ L + DHGL
Sbjct: 1 MAALGPFGAAPRVAVGVSGGADSMALTLLAASWAR---ERGGD-------CLGLIADHGL 50
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R S +EA++ R++ +GI I+R G LQ ARD R+ I
Sbjct: 51 RPVSADEASLTGRRLAALGIGYRILRLQLGPGP----ALQARARDARHASLAAAARGAGI 106
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
LL+ HHA DQ EL +R +R G GLAGMA ++ DD I+++RP
Sbjct: 107 VHLLLGHHAGDQDELRAMRAAR--GPRGLAGMA---------GFAARDD-----IVILRP 150
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL--GDLSSCSFKSELQAVISA 310
LL + + G WVEDP+N F R R+R + L S ++
Sbjct: 151 LLGTDPAVLREFLSGRGIGWVEDPSNADARFERVRVRATRRQAALVPPSLDAD------- 203
Query: 311 CRRTRSYVEHVCSNLINEAVTVMDQGYAVI 340
R+ E + ++ V++ +G+A++
Sbjct: 204 ---RRAAAERDVAEILVRDVSLRPEGWAIV 230
>gi|347536318|ref|YP_004843743.1| tRNA(Ile)-lysidine synthase [Flavobacterium branchiophilum FL-15]
gi|345529476|emb|CCB69506.1| tRNA(Ile)-lysidine synthase [Flavobacterium branchiophilum FL-15]
Length = 436
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 123/268 (45%), Gaps = 46/268 (17%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLRE-ESKEE 139
+I L VSGG DSM L L FI +I + H LR+ ES+ +
Sbjct: 20 KILLAVSGGLDSMVLTDL-----------------FIKTKFSIAIAHCNFNLRDTESQGD 62
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V+ ++ I + + L + Q AAR++RY FQ + QH+I + A
Sbjct: 63 QEFVATFCTNKHIPLFVKSFETLQFANDNKLSTQVAARNLRYEWFQNILKQHEIDFIATA 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HHADD E FI+ LSR +G+ GL GM F N++I VRPLL FS+
Sbjct: 123 HHADDNLETFIINLSRGTGIDGLKGMPFY----------------NNNI--VRPLLYFSR 164
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRT 314
+++ N W ED +N S ++RN+IR L +L+ SF + Q T
Sbjct: 165 ENIQNYALKNNIQWREDSSNASDKYLRNKIRHQIVPILKELNP-SFLNNFQKAQLFLDDT 223
Query: 315 RSYVEHVCSNLINEAVTVMDQGYAVIDL 342
++ + + L+ E +T+M G DL
Sbjct: 224 QTLAKDAAT-LLFEKLTLMQNGVIYFDL 250
>gi|87198103|ref|YP_495360.1| tRNA(Ile)-lysidine synthetase-like [Novosphingobium aromaticivorans
DSM 12444]
gi|123491176|sp|Q2GC97.1|TILS_NOVAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|87133784|gb|ABD24526.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 326
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 102/211 (48%), Gaps = 28/211 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P R+ L VSGGPDS+AL +L Q +F TVDHGLR ES
Sbjct: 22 LDPSGRVCLAVSGGPDSLALMLLM---------QEVAPRDFC----VATVDHGLRAESAA 68
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA +V+ GI +R D G +QE AR RY + + + ++ A
Sbjct: 69 EAAMVAGLCEMRGIAYHTLRLDLAGG----SAVQERARKARYAALADLARRDGLSAVVTA 124
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HHADDQAE ++RL+R +G+ GLAGM +S + + + L+RPLL + +
Sbjct: 125 HHADDQAETLVMRLNRGAGLRGLAGMRAASSVPGA-----------GEVRLLRPLLGWRR 173
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++ + + V DP+N + R RIR
Sbjct: 174 AELVALVEDAGLAPVLDPSNHDHRYERVRIR 204
>gi|84687702|ref|ZP_01015575.1| PP-loop family protein [Maritimibacter alkaliphilus HTCC2654]
gi|84664285|gb|EAQ10776.1| PP-loop family protein [Rhodobacterales bacterium HTCC2654]
Length = 417
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 138/326 (42%), Gaps = 40/326 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DSMAL + W G Q G+A + A+TVDHGLR+E+ EA V+
Sbjct: 23 LVVAVSGGGDSMALLHVAQAW---GRTQ-GKA------VSALTVDHGLRDEAATEAARVA 72
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+D+G+ + DW D QG+LQ AR RY L +LI H DD
Sbjct: 73 EICADLGVAHRTL--DWPDW-DGQGNLQAMARAARYDLIADAAPAGA--AILIGHTMDDA 127
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE F++RL+R SGV GL S++ S++ H L +RP L + +
Sbjct: 128 AETFLMRLARGSGVDGL------SRMRSTWTDRGH--------LWLRPFLTVRRAALRDW 173
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVCS 323
W++DPTN + R R+R +L L+ +E L A R +EH
Sbjct: 174 LHDREIGWIDDPTNDDTQYDRVRMRQALDLLAPLGIDAERLTMTAQAMTEARQALEHWAE 233
Query: 324 NLINEAVTVMDQGYAVIDLEILN--PSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLL 381
+ G V D + P + D ++ + V RP R + L
Sbjct: 234 Q-AARGTAWTEAGDVVFDQAKVQALPRETHDRLIAHAIGWVASAAY---RPRRAA----L 285
Query: 382 LHYIRTFPCKTSLTAAGCYLCPTPGS 407
+ +R T GC L G+
Sbjct: 286 IQAVRDVTETGRATLGGCLLTAKGGT 311
>gi|449295625|gb|EMC91646.1| hypothetical protein BAUCODRAFT_42609, partial [Baudoinia
compniacensis UAMH 10762]
Length = 263
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG--RPKQGHLQEAARDMRY 180
+A VDH LR+ S EA V ++ +GI ++ + G P+ H++ ARD RY
Sbjct: 20 FVAFVVDHRLRDGSTLEAQKVVQQLRRLGIESHMLAVNIKAGTDSPQVQHVESIARDHRY 79
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS---YAYS 237
+ K C H I LL+AHHADDQAE +LRL GL GM + I + Y S
Sbjct: 80 QALGKACYAHGINQLLVAHHADDQAETVLLRLVGKFYGTGLQGMKQNVPIPACQGIYGVS 139
Query: 238 ----------------CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP 281
H +++ ++++RPLL FSK D+ CQ N W ED TN
Sbjct: 140 ESGQPRHAMNPQKSEEPHMQIEDGGVMVMRPLLRFSKQDLISYCQSTNVKWFEDVTNADT 199
Query: 282 LFV-RNRIRMSLGDLSSCSFKSELQAVISACRRTR 315
+ RN +R +L A++ A RTR
Sbjct: 200 TYTKRNAVRYALS-----------HALLPAALRTR 223
>gi|238499739|ref|XP_002381104.1| PP-loop family protein [Aspergillus flavus NRRL3357]
gi|220692857|gb|EED49203.1| PP-loop family protein [Aspergillus flavus NRRL3357]
Length = 637
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 104/260 (40%), Gaps = 56/260 (21%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
R+ L VSGG DSMAL L+ W+ N + A VDH REES EAN
Sbjct: 39 RRLGLAVSGGADSMALAYLSKQWEKSRPND--------ISVTAFVVDHKAREESTREANT 90
Query: 143 VSHRVSDMGI---------------------RCEIVRCDWLDGRP---KQGHLQEAARDM 178
VS + D+GI + EI+ W + K + AR +
Sbjct: 91 VSQWLQDIGIYASPYTLAFNTKQMLTRKLGVKSEILELTWPESTKSPSKVTAFETHARRL 150
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI-------- 230
R++ K C QI LL+ HH DD E + RL + GLAG+ ++I
Sbjct: 151 RFQALGKACRDRQIEALLMGHHQDDTVETTLWRLCTGAKGAGLAGIPEVTRIPECHGIYG 210
Query: 231 ----FSSYAYSCHDD-----------LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVED 275
SSY + IL+ RPLL F K + C N +V D
Sbjct: 211 VSESGSSYTIPSRPQRSSAQARNDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSD 270
Query: 276 PTNRSP-LFVRNRIRMSLGD 294
PTN P L RN IR L +
Sbjct: 271 PTNFDPTLTPRNAIRSLLAE 290
>gi|392391797|ref|YP_006428399.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium dehalogenans ATCC
51507]
gi|390522875|gb|AFL98605.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium dehalogenans ATCC
51507]
Length = 472
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P R+ + VSGGPDSMAL + + E E L+ V HG+REES +E
Sbjct: 16 PGSRVLMAVSGGPDSMALAHIL-------WRYVKEMKEQKITLVITHVHHGVREESDDEE 68
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+V D I C I R D + G Q AAR+ RY +++ + +L AH
Sbjct: 69 KMVKSMARDWEIPCLIHRFDSKEYAKSVGKSFQTAAREWRYACWKEDMRKENCTLLATAH 128
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
H DQAE + RL R SG GLAG+ Y + L+RPLL +K+
Sbjct: 129 HLGDQAETVLYRLLRGSGTAGLAGI-----------YPQKGE-------LIRPLLSVTKE 170
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D+ + C+ N + D +N P++ RN+IR+ L
Sbjct: 171 DILEYCRNENLPYALDCSNEEPIYARNKIRLQL 203
>gi|158422151|ref|YP_001523443.1| cell cycle protein [Azorhizobium caulinodans ORS 571]
gi|158329040|dbj|BAF86525.1| cell cycle protein [Azorhizobium caulinodans ORS 571]
Length = 332
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 29/203 (14%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEANIVSHR 146
+SGGPDS A+ VL W+ G +DG TVDHGLR E+ +EA V
Sbjct: 1 MSGGPDSTAMLVLARIWRYG----------LLDGPSFFVATVDHGLRPEATDEALAVGAL 50
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
++G+ I+ W +P+ G +QEAARD R+ L + Q+ + L +AH DDQAE
Sbjct: 51 CEELGLPHVIL--PWRGPKPRSG-IQEAARDERFALLRSFARQNGLDGLALAHTQDDQAE 107
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
+ RL R SG+ GLA M S + + + ++RP L +K +
Sbjct: 108 TVLFRLCRGSGIGGLAAMRPVS--------------RRNGLAVLRPFLSIAKARLVATLA 153
Query: 267 GGNRDWVEDPTNRSPLFVRNRIR 289
+V DP+N + R R+R
Sbjct: 154 VSGTPFVRDPSNEDTRYARPRLR 176
>gi|384517343|ref|YP_005704648.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 62]
gi|323479476|gb|ADX78915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 62]
Length = 462
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 134/299 (44%), Gaps = 32/299 (10%)
Query: 70 FSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
F +R G +PH I + VSGG DSMAL L Q E + L+ V
Sbjct: 5 FYKRGKEQGFWQPHQTIVVAVSGGVDSMALLTL--------MEQVAEKEQL--QLVIAHV 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
+H LRE S +EA ++ + R W D KQ +L+ AR RY F++V
Sbjct: 55 NHQLREASAQEAQYLATYCQQRELTYYETR--WEDPE-KQRNLEAKARTFRYEFFKEVME 111
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
VL+ AHH DDQAE +++L R + AG I ++ +
Sbjct: 112 IEGAAVLMTAHHLDDQAETILMKLIRGTNFSHSAG------IKERRPFATGE-------- 157
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLL + K+++Y+ Q + ED TN++ ++RNR+R + L + F ++
Sbjct: 158 LIRPLLIYPKEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQVLPLLKQENPQFLDQIA 217
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK-IEDIFLSKFLALVL 363
+ + + +++ ++EAV QG+ + +L + + FL+ F L
Sbjct: 218 SFSNEQHFAQEFIQEQIEPQLSEAVEPTKQGWRIPLKRLLKETPAYQHFFLTAFFQKTL 276
>gi|399991805|ref|YP_006572045.1| tRNA(Ile)-lysidine synthase [Phaeobacter gallaeciensis DSM 17395 =
CIP 105210]
gi|398656360|gb|AFO90326.1| putative tRNA(Ile)-lysidine synthase [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 386
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 20/186 (10%)
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP---KQGHLQEAARDMRYRLF 183
TVDHGLR S EEA +V+ + +G+ +I++ W D RP + G+LQE AR+ RY L
Sbjct: 22 TVDHGLRPTSGEEAQMVAGAAAKLGMAHDILQ--WCD-RPTAGQAGNLQEQARNARYALL 78
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+ I + + H ADDQAE ++RL R+SGV GL+ M+ S +
Sbjct: 79 TSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSGLSAMSRSRAM------------- 125
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE 303
+ L+RPLL+ +++++ + WVEDP+N F R R+R ++ L E
Sbjct: 126 -EGVTLLRPLLEVTREELRAYLRTRECCWVEDPSNEDARFERVRVRQAMEVLEPLGLTVE 184
Query: 304 LQAVIS 309
A ++
Sbjct: 185 RLAAVA 190
>gi|341615974|ref|ZP_08702843.1| ATPase [Citromicrobium sp. JLT1363]
Length = 304
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 102/209 (48%), Gaps = 26/209 (12%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+ VSGGPDS+AL +L G + A TVDHGLR ES+ EA V
Sbjct: 1 MAVSGGPDSLALLLLANAAMPGRVD-------------AATVDHGLRTESRAEAEFVGEV 47
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ +G+ I+ + G+ Q AR RY Q + AHHADDQAE
Sbjct: 48 CAQIGVPHAILSVEL-----AAGNTQAMARAARYEALGLHFTQMGVATFATAHHADDQAE 102
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
++RL+R SG+ GLAG+ SS F + + +LL+RPLL + ++++ I
Sbjct: 103 TLLMRLNRGSGLSGLAGVRPSSIFFPAGVVA--------EMLLIRPLLGWRREELAAIVA 154
Query: 267 GGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
+ V+DP+N + R RIR + DL
Sbjct: 155 EAGIEPVKDPSNTDDAYERARIRKASADL 183
>gi|330814391|ref|YP_004358630.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487486|gb|AEA81891.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 346
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 27/201 (13%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148
+SGGPDS+AL + + + + VDH +R S EA V +
Sbjct: 44 ISGGPDSLALAACSKIYSEKNHT----------NVFYLIVDHNIRANSALEAKRVQKNLL 93
Query: 149 DMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
+ + +I+ + R +Q+ ARD RY++ C +++I +L AHH DDQ E F
Sbjct: 94 KISAKAKILTIKKIISRS----IQKNARDHRYKIMSDFCKKNKISYMLTAHHLDDQIENF 149
Query: 209 ILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGG 268
+RLSR SG+ GL+ M + + I +VRP L SK + ++ +
Sbjct: 150 YIRLSRGSGLQGLSSMKIAEK-------------NKEKITIVRPFLSSSKKILIQVAKKI 196
Query: 269 NRDWVEDPTNRSPLFVRNRIR 289
+++DP+N + F+R+RIR
Sbjct: 197 FTTFIKDPSNTNDRFLRSRIR 217
>gi|347831232|emb|CCD46929.1| hypothetical protein [Botryotinia fuckeliana]
Length = 627
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 113/260 (43%), Gaps = 54/260 (20%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTG--GFNQNG---EAGEFIDGLLAITVDHGLREES 136
H + L VSGG DSMAL L K F +G G+ G A+ V+HG+R+ S
Sbjct: 33 HRTVGLAVSGGVDSMALAALCMQMKKNYIPFASDGYPIHLGKI--GFRAVIVNHGVRDGS 90
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLD--GRPKQ-GHLQEAARDMRYRLFQKVCIQHQIG 193
EEA V + +G+ I+ W D G P Q + + AR R++ K C + I
Sbjct: 91 LEEAQKVMGVLESLGMTSRILTLPWKDITGNPSQLPNFESLARKYRFQAIGKYCQKSDIS 150
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHD------------ 240
+L+ HHADDQAE ++RL++ + +GL G+ SS I Y H+
Sbjct: 151 SILLGHHADDQAETVLMRLAKGARGVGLLGIKPSSPIPECEGIYGVHESGNPITLALPIK 210
Query: 241 ------------------------------DLKNHSILLVRPLLDFSKDDMYKICQGGNR 270
++++ I L RPLL+F K+ + C+
Sbjct: 211 SKQGTKWTNIIEKDDGDQPASGVLKIMPQLEVESGGITLYRPLLEFPKERLIATCKALGV 270
Query: 271 DWVEDPTNRSPLFV-RNRIR 289
+W ED TN P RN IR
Sbjct: 271 EWFEDNTNSDPTLTDRNAIR 290
>gi|429503601|ref|YP_007184785.1| hypothetical protein B938_00350 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485191|gb|AFZ89115.1| hypothetical protein B938_00350 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 472
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 114/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM + S + L+RP L +KD++
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGW--------------LIRPFLYAAKDEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 174 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTEDEQYL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QSLTKERMNKVIT 246
>gi|385267094|ref|ZP_10045181.1| tRNA(Ile)-lysidine synthase [Bacillus sp. 5B6]
gi|385151590|gb|EIF15527.1| tRNA(Ile)-lysidine synthase [Bacillus sp. 5B6]
Length = 486
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 115/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 34 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 83 QSYCEAEHILCETVQID-VSAYAKKNRLNKQAAARDCRYQFFEDLMAKHQAKFLALAHHG 141
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM ++ S + L+RP L +KD++
Sbjct: 142 DDQVETMLMRLAKGTLGAGLAGMQPVRELASGW--------------LIRPFLYAAKDEI 187
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 188 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYL 247
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 248 QSLTKERMNKVIT 260
>gi|400753447|ref|YP_006561815.1| tRNA(Ile)-lysidine synthase [Phaeobacter gallaeciensis 2.10]
gi|398652600|gb|AFO86570.1| putative tRNA(Ile)-lysidine synthase [Phaeobacter gallaeciensis
2.10]
Length = 386
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 20/186 (10%)
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP---KQGHLQEAARDMRYRLF 183
TVDHGLR S +EA +V+ + +G+ +I++ W D RP + G+LQE AR+ RY L
Sbjct: 22 TVDHGLRPTSGDEAQMVAGAAAKLGMAHDILQ--WCD-RPTAGQAGNLQEQARNARYALL 78
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+ I + + H ADDQAE ++RL R+SGV GL+ M+ S +
Sbjct: 79 TSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSGLSAMSRSRAM------------- 125
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE 303
+ L+RPLL+ +++++ + WVEDP+N F R R+R ++ L E
Sbjct: 126 -EGVTLLRPLLEVTREELRAYLRARECCWVEDPSNEDARFERVRVRQAMEALEPLGLTVE 184
Query: 304 LQAVIS 309
A ++
Sbjct: 185 RLAAVA 190
>gi|154684586|ref|YP_001419747.1| hypothetical protein RBAM_000780 [Bacillus amyloliquefaciens FZB42]
gi|154350437|gb|ABS72516.1| YacA [Bacillus amyloliquefaciens FZB42]
Length = 472
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 114/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM + S + L+RP L +KD++
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGW--------------LIRPFLYAAKDEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 174 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTEDEQYL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QSLTKERMNKVIT 246
>gi|159043663|ref|YP_001532457.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
gi|157911423|gb|ABV92856.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
Length = 417
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 105/230 (45%), Gaps = 30/230 (13%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI + +SGG DSMAL L A W Q+G L A +VDHGLR E+ +E +
Sbjct: 23 RRIGVAMSGGGDSMALLHLLADWAA----QSGAE------LRAASVDHGLRPEAADEIAL 72
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + +GI + + D G+LQ AARD RYRL V+ + H D
Sbjct: 73 AAKTCAALGIPHDSLTWD----EAPAGNLQAAARDARYRLLSDWAQAQGCAVVCLGHTQD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE +LRL R SGV GLA M + L+ ++ L RPLL S+ +
Sbjct: 129 DQAETVLLRLLRGSGVDGLAAMRPRT-------------LRAGTVWL-RPLLAVSRAALR 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLG--DLSSCSFKSELQAVISA 310
W EDP+N F R R+R ++ DL QA+ A
Sbjct: 175 ADLTARGVAWAEDPSNADLRFDRVRVRQAMAALDLPVARLADTAQAMARA 224
>gi|421729437|ref|ZP_16168569.1| YacA [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|407076681|gb|EKE49662.1| YacA [Bacillus amyloliquefaciens subsp. plantarum M27]
Length = 472
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 113/253 (44%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLTLAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM + S + L+RP L KD++
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGW--------------LIRPFLYAEKDEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 174 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QSLTKERMNKVIT 246
>gi|394994201|ref|ZP_10386929.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. 916]
gi|393804977|gb|EJD66368.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. 916]
Length = 472
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 114/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM + S + L+RP L +KD++
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGW--------------LIRPFLYAAKDEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 174 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTEDEQYL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QALTKERMNKVIT 246
>gi|384263698|ref|YP_005419405.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387896594|ref|YP_006326890.1| cell cycle protein [Bacillus amyloliquefaciens Y2]
gi|380497051|emb|CCG48089.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387170704|gb|AFJ60165.1| cell cycle protein [Bacillus amyloliquefaciens Y2]
Length = 486
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 114/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 34 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 83 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 141
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM + S + L+RP L +KD++
Sbjct: 142 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGW--------------LIRPFLYTAKDEI 187
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 188 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYL 247
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 248 QSLTKERMNKVIT 260
>gi|150865036|ref|XP_001384086.2| hypothetical protein PICST_31371 [Scheffersomyces stipitis CBS
6054]
gi|149386292|gb|ABN66057.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 484
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 13/208 (6%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + +SGG DS+ L L + + + + N A + AIT+DHG R S EEA V
Sbjct: 25 RVLVALSGGVDSICLTYLLSQY-SRLYCNNAIA------INAITIDHGYRSGSNEEAKAV 77
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
V G++ + + ++ + + +E AR RY F++ C Q L +AH+ +D
Sbjct: 78 GKLVEKWGVQHIVKKLEYEKLPTEYSNFEEIARMKRYEKFEETCHQSDASHLFVAHNLND 137
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
Q E FI RL NS + GLAG+ A +S S S + I ++RPLL F K ++
Sbjct: 138 QLETFIQRLQGNSSIYGLAGLKAQTSLPVQSQLPSAEKE----RISVIRPLLSFEKSEII 193
Query: 263 KICQGGNRDWVEDPTNRS-PLFVRNRIR 289
C+ N W ED TN L RN +R
Sbjct: 194 DTCKQQNISWFEDSTNMDINLTKRNYLR 221
>gi|358366655|dbj|GAA83275.1| PP-loop family protein [Aspergillus kawachii IFO 4308]
Length = 641
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 124/302 (41%), Gaps = 57/302 (18%)
Query: 73 RMAMAGLK--PH--HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
R A G K PH RI L +SGG DSMAL L W+ Q + + + + A V
Sbjct: 31 RPARTGRKYDPHLPRRIGLAISGGADSMALAYLCKQWE---LTQRQTSNDTVS-VTAFVV 86
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DH REES EAN+V+ + DMG+ +I+ W + AR +R++ + C
Sbjct: 87 DHKAREESTREANMVAGWLDDMGLMTQILPLTWPSY--SISAFETHARRLRFQALGQACR 144
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF----------------- 231
I LL+ HH DD E + RL + GLAG+ ++I
Sbjct: 145 ARNIETLLMGHHQDDNVETTLWRLCTGARGAGLAGIPAVTRIPECHGLYGVAESGSSMTL 204
Query: 232 -----------------------SSYAYSCHDDLKNH-----SILLVRPLLDFSKDDMYK 263
S + D K + I + RPLL F K +
Sbjct: 205 SKPANHTNYRIKTTNTNELRLTESPPTPTTQDQQKQYQISTGGISITRPLLSFPKRSLLA 264
Query: 264 ICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 322
C+ N +V+DPTN P L RN IR L + E ++++S R++ S + V
Sbjct: 265 TCKENNIPYVDDPTNFDPTLTPRNAIRSLLAEKKLPRALRE-ESILSLMRKSNSLLRSVM 323
Query: 323 SN 324
N
Sbjct: 324 EN 325
>gi|152973911|ref|YP_001373428.1| tRNA(Ile)-lysidine synthetase [Bacillus cytotoxicus NVH 391-98]
gi|152022663|gb|ABS20433.1| tRNA(Ile)-lysidine synthetase [Bacillus cytotoxicus NVH 391-98]
Length = 476
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 31/270 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L+ H I +GVSGGPDS+AL + EA ++ VDH R +ES
Sbjct: 19 LEEHSTIVVGVSGGPDSLALLYYLL--------EKREAKNLT--IVVAHVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + ++GI CE +R + L + + G + Q AAR+ RY +++ ++ G +
Sbjct: 69 EDLQFVENLCHELGILCETIRINVLQYQQQHGMNAQVAARECRYAFLERIMRKYDAGYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPQGYAGIAVKRPFHNGY--------------LIRPLLAV 174
Query: 257 SKDDMYKIC-QGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACR 312
+K+++ C Q G + D +N+ ++ RNR+R + + Q +
Sbjct: 175 TKEEILDYCDQLGIMPRI-DSSNKKEVYTRNRLRKYVLPYLKEENPQVHEHFQKFSQLMQ 233
Query: 313 RTRSYVEHVCSNLINEAVTVMDQGYAVIDL 342
+Y++ + +N+ +T Y V+ +
Sbjct: 234 EDEAYLQELAFEKMNKVITKKSDKYLVLSI 263
>gi|367474926|ref|ZP_09474416.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 285]
gi|365272803|emb|CCD86884.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS 285]
Length = 364
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 111/220 (50%), Gaps = 25/220 (11%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGGPDSMAL L A W+ NG L+A+T+DHGLR E+ EA +V
Sbjct: 41 SGGPDSMALMWLAARWRA--ALANGPR------LVAVTIDHGLRPEAGREARMVKAVARH 92
Query: 150 MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209
+G+ +R W D +P G L EAAR RYRL + Q ++ AH DDQAE +
Sbjct: 93 LGLPHRTLR--WTDDKPATG-LPEAARLARYRLLARAAGQAGASHVVTAHTRDDQAETVL 149
Query: 210 LRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269
+RL R SG+ GLA MA S+ +LL RPLLD K + +
Sbjct: 150 MRLLRGSGLAGLAAMAAISE--------------RAGLLLARPLLDVPKLRLVATLRSEG 195
Query: 270 RDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
D+ +DPTNR P + R R+R + L++ ++ A ++
Sbjct: 196 LDFADDPTNRDPAYTRPRLRALMPALAAEGGDAKTLATLA 235
>gi|315044575|ref|XP_003171663.1| PP-loop family protein [Arthroderma gypseum CBS 118893]
gi|311344006|gb|EFR03209.1| PP-loop family protein [Arthroderma gypseum CBS 118893]
Length = 721
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 138/333 (41%), Gaps = 78/333 (23%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL--LAITVDHGLREESKE 138
P RI L VSGG DSMAL L + + GF I GL A VDH R ES
Sbjct: 38 PLQRIGLAVSGGSDSMALVYLCSQLASQGF---------IPGLDIKAYIVDHKYRPESSH 88
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EA+ V+ V +G+R +++ W DG K+G + AR +RY++ K C + + LL
Sbjct: 89 EAHSVADCVEKLGVRSKVLTLQWPDGEALTKKG-FETQARMLRYQILGKACTKDGVKALL 147
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI----------FSSYAYSCHDDLKNHS 246
+ HH DD E ++R+S+ LGL G + I S A S D L++ +
Sbjct: 148 LGHHQDDNVETALMRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGSATSLQDILRSAT 207
Query: 247 ------------------------------ILLVRPLLDFSKDDMYKICQGGNRDWVEDP 276
I L RP FSK + CQ N +V D
Sbjct: 208 MDGTISYPSSEIPPRSFNSNTGEMKVSTGGIYLFRPFRSFSKSRLVATCQENNIPFVSDA 267
Query: 277 TNRSPLF-VRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVE---HVCSNLINEAVTV 332
TN F +RN +R L + + +++S ++R E +C L+
Sbjct: 268 TNEDHTFTIRNTVRRLLESETLLPRALQRPSILSLVDKSREQTEKFRELCEFLLK----- 322
Query: 333 MDQGYAVIDLEILNPSKIEDIFLSKFLALVLQF 365
++EILN F ++F +V++
Sbjct: 323 --------NVEILN-------FDTRFGTMVIKM 340
>gi|86139143|ref|ZP_01057713.1| PP-loop family protein [Roseobacter sp. MED193]
gi|85823987|gb|EAQ44192.1| PP-loop family protein [Roseobacter sp. MED193]
Length = 399
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 107/226 (47%), Gaps = 26/226 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGG DS+AL L K + E L+ TVDHGLR ES++EA
Sbjct: 4 RIGIAVSGGGDSVALMHLL---KECFCDDPVE-------LMVATVDHGLRAESRQEAEDT 53
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++G+R EI+ W G K G+LQ+ AR RY L Q+ I VL + H ADD
Sbjct: 54 ARMARELGLRHEIL--TWEQGPEKTGNLQDQARRARYGLLTAWARQNGIPVLALGHTADD 111
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE I+RL R SGV GLAG+ + S L + +R LD +
Sbjct: 112 QAETVIMRLMRASGVNGLAGIPVRR---TQDGVSLLRPLLGLRRVELRQYLDAA------ 162
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
+ W+EDP+N + R +IR +L L A ++
Sbjct: 163 -----GQSWIEDPSNEDESYDRIKIRKALAVLEDLGLTVPALATVA 203
>gi|384253551|gb|EIE27026.1| hypothetical protein COCSUDRAFT_83585 [Coccomyxa subellipsoidea
C-169]
Length = 130
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAG 223
GRP QG L +R RYRL C I LL HHADDQAE F+LRL+R SG+ GL G
Sbjct: 11 GRPSQGQLMPQSRQERYRLMTGACASLDIPCLLTGHHADDQAETFLLRLARGSGIDGLQG 70
Query: 224 MAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLF 283
M + A H ++RPLL K D+ ++C+ W EDPTN + +
Sbjct: 71 M---RSLVPFVAGGMHGR-------ILRPLLSLHKADLTEVCRSAGLPWAEDPTNANTAY 120
Query: 284 VRNRIR 289
RN++R
Sbjct: 121 ARNKMR 126
>gi|239825646|ref|YP_002948270.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70]
gi|239805939|gb|ACS23004.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70]
Length = 462
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 139/316 (43%), Gaps = 37/316 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P+ + +GVSGGPDS+AL L W E+ L+A VDH R ++S+
Sbjct: 15 LTPNSTVIVGVSGGPDSLAL--LHFFWSI--------RQEWNITLIAAHVDHMFRGKQSE 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCD--WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
E+ N V H + GI CE V+ D K G +QEAAR RYR F ++ +++ L
Sbjct: 65 EDMNFVKHFCAARGIICEAVQMDVPAFQRESKLG-VQEAARQCRYRFFGELMKKYKAHYL 123
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ HH DDQ E ++RL R S G AG+ + Y ++RP L
Sbjct: 124 ALGHHGDDQVETILMRLVRGSTSKGYAGIPAKRPFYGGY--------------IIRPFLA 169
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACR 312
S+ D+ C+ D +N + RNR R + + Q+
Sbjct: 170 ISRADIDAYCRQHQITPRHDASNDKDDYTRNRFRHHVIPFLKKENPRLHERFQSYSEMVM 229
Query: 313 RTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRP 372
++E + + +N+ VM++ + + L+I + + + L+L ++ +
Sbjct: 230 EDELFLEELAKDAMNK---VMEKQHDTVALKIEPFQAMPKPLQRRGIQLILNYLY---KD 283
Query: 373 VRGSTSKLLLHYIRTF 388
+ S S + +H I TF
Sbjct: 284 IPSSLSSVHIHNIFTF 299
>gi|403382785|ref|ZP_10924842.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JC66]
Length = 473
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 103/222 (46%), Gaps = 42/222 (18%)
Query: 79 LKPHHRIALGVSGGPDSMALCVL------TAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
+ P R+ VSGGPDSMAL L T WK L+ V+H
Sbjct: 17 IAPGERLVAAVSGGPDSMALIHLLLQLAKTWNWK----------------LMIGHVNHQF 60
Query: 133 R-EESKEEANIVSHRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCI 188
R EES EA V GI C+I D ++ R + Q AAR+ R + V
Sbjct: 61 RKEESVLEAEFVQGWAEQAGIPCQIAVIDVPAYI--RETGDNAQNAAREKRLQFLAHVAG 118
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
Q + +++ HHADDQAE ++RL R +G GLAGMA+S + +
Sbjct: 119 QFKARKIVLGHHADDQAETILMRLIRGTGPSGLAGMAYSQSW--------------NGLQ 164
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM 290
LVRPLLD K+++ C+ ++ D +N + RNRIR+
Sbjct: 165 LVRPLLDVHKEELIGYCKEHKLEYQLDSSNAERKYTRNRIRL 206
>gi|337287184|ref|YP_004626657.1| tRNA(Ile)-lysidine synthetase [Thermodesulfatator indicus DSM
15286]
gi|335360012|gb|AEH45693.1| tRNA(Ile)-lysidine synthetase [Thermodesulfatator indicus DSM
15286]
Length = 456
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 28/208 (13%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
R+ L VSGGPDSMAL + K E L DH LR+ES +EA
Sbjct: 22 ERVLLAVSGGPDSMALLHVLLALKD----------ELELDLFVAYYDHRLRKESLKEALF 71
Query: 143 VSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V +G+ + L + ++ L+ A R++RYR F+++ ++++ + +AH A
Sbjct: 72 VKSYAEKLGLPFILAAAPVKLYAKREKISLEAAGRELRYRFFERIAEEYELNRVALAHQA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DD AE +LR R +G GLAG+ + +RPLL S++++
Sbjct: 132 DDLAEEVLLRFIRGAGRRGLAGIPV-----------------KRGGIFIRPLLMVSREEI 174
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ N ++EDP+N P F+RNR+R
Sbjct: 175 EDFLKKENIPYIEDPSNEDPRFLRNRVR 202
>gi|375360758|ref|YP_005128797.1| YacA [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|371566752|emb|CCF03602.1| YacA [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
Length = 486
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 113/253 (44%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 34 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 83 QSYCEAEHILCETVQID-VSAYAKKNKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 141
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM + S + L+RP L KD++
Sbjct: 142 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGW--------------LIRPFLYAEKDEI 187
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 188 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYL 247
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 248 QSLTKERMNKVIT 260
>gi|357023692|ref|ZP_09085864.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium amorphae CCNWGS0123]
gi|355544361|gb|EHH13465.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium amorphae CCNWGS0123]
Length = 463
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 106/222 (47%), Gaps = 16/222 (7%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
LLA+T+DH LR S EA V+ ++ GI +R W +P G L AAR RYRL
Sbjct: 57 LLAVTIDHDLRPGSAAEARAVASLCAERGIAHRTLR--WSGPKPSSG-LPAAARQARYRL 113
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ ++ I ++L H ADDQAE ++R +R+ G GLA MA + + A + D
Sbjct: 114 LAQAALEDGIDLILTGHTADDQAETVLMRHARDEG-RGLAEMA--GRGLAGMAPATLYDW 170
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
++ +VRPLL + + Q N W EDPTN F R R+R LG+ F
Sbjct: 171 RH---WIVRPLLGARRAALRAFLQRENVGWAEDPTNADVHFERPRVRAVLGEDDGQRFAE 227
Query: 303 ELQAVISACRRT---RSYVEHVCSNLINEAVTVMDQGYAVID 341
IS RR R + H + LI + + G +D
Sbjct: 228 ----AISLARRVATEREELGHRAAILIRDFAAMPTTGLIRLD 265
>gi|212637909|ref|YP_002314429.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1]
gi|212559389|gb|ACJ32444.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1]
Length = 460
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 98/210 (46%), Gaps = 26/210 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDS+AL L W E + L+A VDH LR ++S+E+ + V
Sbjct: 21 VVVGVSGGPDSLAL--LHFLW--------SERERYDIQLVAAHVDHMLRGKQSEEDMHFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
H I CE + D + G +QEAARD RY F++V +H + +AHH D
Sbjct: 71 KHFCEQHSIICEATQLDVPAYMERTGKGVQEAARDCRYTFFEQVMYKHHARCVALAHHGD 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++RL R S G AG+ S Y +VRP L + +
Sbjct: 131 DQIETVLMRLVRGSTTRGYAGIPVKRPFGSGY--------------IVRPFLCIDRRQIE 176
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ CQ DP+N + RNR R ++
Sbjct: 177 QYCQQNGLHARHDPSNEKDDYTRNRFRHAV 206
>gi|385301442|gb|EIF45631.1| trna -lysidine synthase [Dekkera bruxellensis AWRI1499]
Length = 492
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 126/261 (48%), Gaps = 25/261 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ +SGG DSMAL + K QN + AITV+H +R ES EEA V
Sbjct: 28 IAVALSGGADSMALLNMLVRLKEEKL-QNLH-------IHAITVNHNVRPESAEEAQEVG 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
VS + + I+ + G PKQ +++ AR++RY+L C + G + + HH DQ
Sbjct: 80 EVVSKLPVEHHILDINQKIG-PKQ--MEKNARELRYKLLLGACEKVGAGDIFMGHHRSDQ 136
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E F+LR+ NS + GL M + S+Y S + DLK +VRP+L+ K ++
Sbjct: 137 LETFLLRMLXNSTLFGLRSM----KPVSNYPIVSPNLDLK-----VVRPMLNIDKSEILS 187
Query: 264 ICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDLSSCSFKSELQ--AVISACRRTRSYVEH 320
C+ W ED TN P L RN R L D LQ ++ + + S+ +
Sbjct: 188 YCKSAGLKWFEDRTNFIPGLTKRNYFRSLLKD-DKNKLPPALQKSKILDSLAKVESFNKI 246
Query: 321 VCSNLINEAVTVMDQGYAVID 341
V + N + ++G VID
Sbjct: 247 VDLRMNNIRKRLQEEGADVID 267
>gi|294085869|ref|YP_003552629.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322]
gi|292665444|gb|ADE40545.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 444
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 134/276 (48%), Gaps = 30/276 (10%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
+T+ F+ M+ AGL H +SGG DS ALC+L + + +G+A
Sbjct: 9 LTRLDTEFAAAMSAAGLDQHISFVSALSGGADSTALCLLMSRFAVA----SGKAHR---- 60
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
AI VDHG+RE + EA V+ R+ GI +I + D P+ G +Q AR R+ +
Sbjct: 61 --AIIVDHGIRENAGAEAARVAARMQKFGINVKIEKVS--DKAPETG-IQAWARRQRFEI 115
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ LL+ HHA DQAE +RL ++SG++GLAGM +S
Sbjct: 116 MLAHA-RRDNAALLVGHHAGDQAETIAMRLGKDSGLVGLAGMKRTSW------------- 161
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
+ + RPLLD+ D M IC+ ++ +DP+N F R R+R + + ++ +
Sbjct: 162 -RAGVPIGRPLLDWPADRMADICRIFACEFEDDPSNLDRRFERIRLRQFM--MQDKAYGA 218
Query: 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYA 338
+L + A R+ + ++ ++ + + + GYA
Sbjct: 219 KLCRLGDAARQLLAMLDQTLADSLARDIRLDAAGYA 254
>gi|84516649|ref|ZP_01004008.1| PP-loop family protein [Loktanella vestfoldensis SKA53]
gi|84509685|gb|EAQ06143.1| PP-loop family protein [Loktanella vestfoldensis SKA53]
Length = 392
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 141/318 (44%), Gaps = 39/318 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI-TVDHGLREESKEEANIV 143
+ L VSGG DS+AL L A I G +++ +VDHGLR ES E +V
Sbjct: 16 VGLAVSGGGDSIALLHLAAA---------------IGGRISVASVDHGLRPESAAECGMV 60
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + G+ + ++ W G ++G+LQ+ AR RY L + + + H ADD
Sbjct: 61 ADICTSYGLPHQTLK--W-TGWDRRGNLQDQARRARYGLLADWARAAGVANIALGHTADD 117
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE ++ L+R +GV GLAGMA A D L H RPLL ++ +
Sbjct: 118 QAETIVMALARGAGVGGLAGMA---------AVMSRDGLHYH-----RPLLQVTRVALRA 163
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
R W +DP+N P + R RIR + L+ S+ ++ T + +
Sbjct: 164 YLVATGRVWCDDPSNDDPAYERIRIRQAADTLAELGLTSQTLGQVAQHMATATEALDRGT 223
Query: 324 NLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
+ AV + G +I L + + S+ + + + ++ + +R P R + L+H
Sbjct: 224 ADLAAAVMMPQSGDVLIMLALRDLSREQ---ARRLVLAAMERVHRRITPPRKDEQQRLMH 280
Query: 384 YIRTFPCKTSLTAAGCYL 401
+ +T GC +
Sbjct: 281 ALLQ---GQGVTLGGCLM 295
>gi|326481619|gb|EGE05629.1| PP-loop family protein [Trichophyton equinum CBS 127.97]
Length = 774
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 135/315 (42%), Gaps = 57/315 (18%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P RI L VSGG DSMAL L + T E +I VDH R ES +EA
Sbjct: 38 PLQRIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYI-------VDHKYRPESSQEA 90
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V+ RV ++G++ +++ W +G K+G + AR +RY++ + C++ I LL+
Sbjct: 91 QSVAKRVKNLGVQSKVLTLQWPEGGILTKKG-FETQARTLRYQILGQACVKDGIRALLLG 149
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQI----------FSSYAYSCHDDLKNHS-- 246
HH DD E ++R+S+ LGL G + I S A S D LK+ +
Sbjct: 150 HHQDDNVETALMRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQDILKSTNMD 209
Query: 247 ----------------------------ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278
I L RP FSK + C+ +V D TN
Sbjct: 210 GTILHLCSEIPSCSISFAPEKMQVSTGGIYLFRPFRSFSKSRLVATCRENKIPFVSDSTN 269
Query: 279 RSPLF-VRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVE---HVCSNLINEA-VTVM 333
F +RN +R L S + +++S ++R + +C +++ + V +
Sbjct: 270 DDLTFTIRNTVRQLLNSEDSLPRALQRPSILSLVDKSREQTKKFRELCESILKKVEVLSL 329
Query: 334 DQ--GYAVIDLEILN 346
D G VI + +++
Sbjct: 330 DTRFGTMVIKMPMMS 344
>gi|386683446|gb|AFJ19491.1| mitochondrial tRNA(Ile)-lysidine synthetase [Peltigera malacea]
Length = 598
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 119/289 (41%), Gaps = 48/289 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGG DSMAL L A K N E + A VDH R S +EA V
Sbjct: 33 RIGIAVSGGVDSMALARLCAELK----NLPKELQRWNFHFTAFIVDHRARPNSSKEAYFV 88
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+++ G+ I+ DW + Q + + AR +RY+ C QI LL+AHH D
Sbjct: 89 RNQLQTWGLPTIILPLDWSGVQAAQLPNFETQARRLRYQALGNACRDRQIQSLLLAHHED 148
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQI-------------------------------F 231
DQAE +LRL++ +GL GM ++QI F
Sbjct: 149 DQAETVLLRLAQGHRGIGLTGMQDTAQIPECCGIHGVHQSGSKELGKEILTVGSLNRKLF 208
Query: 232 SSYAYSCHDDL------KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV- 284
+ S + ++ I + RPLL+FSK + C WVED TNR P
Sbjct: 209 PNKILSRLQKVDSPMPFEDGGIQIQRPLLNFSKRRLKATCDWYKIRWVEDETNRDPTRTP 268
Query: 285 RNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVM 333
RN +R L CS + L + R V N + A T+
Sbjct: 269 RNAVRQLL-----CSKRLPLSLQKDVIAKLRKRVSDKIENRVGHARTLF 312
>gi|326472395|gb|EGD96404.1| hypothetical protein TESG_03852 [Trichophyton tonsurans CBS 112818]
Length = 774
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 135/315 (42%), Gaps = 57/315 (18%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P RI L VSGG DSMAL L + T E +I VDH R ES +EA
Sbjct: 38 PLQRIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYI-------VDHKYRPESSQEA 90
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V+ RV ++G++ +++ W +G K+G + AR +RY++ + C++ I LL+
Sbjct: 91 QSVAKRVKNLGVQSKVLALQWPEGGILTKKG-FETQARTLRYQILGQACVKDGIRALLLG 149
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQI----------FSSYAYSCHDDLKNHS-- 246
HH DD E ++R+S+ LGL G + I S A S D LK+ +
Sbjct: 150 HHQDDNVETALMRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQDILKSTNMD 209
Query: 247 ----------------------------ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278
I L RP FSK + C+ +V D TN
Sbjct: 210 GTILHLCSEIPSCSISFAPEKMQVSTGGIYLFRPFRSFSKSRLVATCRENKIPFVSDSTN 269
Query: 279 RSPLF-VRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVE---HVCSNLINEA-VTVM 333
F +RN +R L S + +++S ++R + +C +++ + V +
Sbjct: 270 DDLTFTIRNTVRQLLNSEDSLPRALQRPSILSLVDKSREQTKKFRELCESILKKVEVLSL 329
Query: 334 DQ--GYAVIDLEILN 346
D G VI + +++
Sbjct: 330 DTRFGTMVIKMPMMS 344
>gi|332981200|ref|YP_004462641.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON]
gi|332698878|gb|AEE95819.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON]
Length = 475
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 110/237 (46%), Gaps = 32/237 (13%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129
+ R+ M ++P +I +GVSGGPDS AL + + G+ L+ V+
Sbjct: 17 YIRKYKM--IQPGQKIVVGVSGGPDSSALLHVLMSLR----------GKLDAELIVAHVE 64
Query: 130 HGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVC 187
HG+R ++S E+A V MG+ + CD + G QE A R +RY F+++C
Sbjct: 65 HGMRAQQSVEDAQYVVSMAQRMGLSVYVKHCDVPSYAKEHGLSQEQAGRIIRYDFFRQIC 124
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
+ +AH+ DD AE +L + R SG+ GL G+ D
Sbjct: 125 RYRGCNSIAVAHNKDDNAETILLHILRGSGLDGLVGIR-----------PVRGD------ 167
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL 304
++RPLLD S+ D+ C + D TN P ++RNRIR+ L S +F +
Sbjct: 168 -IIRPLLDVSRTDIEAYCAAAGMNPRRDYTNNDPSYMRNRIRLKLIPFLSQNFNPNI 223
>gi|451348543|ref|YP_007447174.1| YacA [Bacillus amyloliquefaciens IT-45]
gi|449852301|gb|AGF29293.1| YacA [Bacillus amyloliquefaciens IT-45]
Length = 472
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 113/253 (44%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I GVSGGPDSMAL + N++ I +A VDH R ES+E+ V
Sbjct: 20 IIAGVSGGPDSMALLSM--------LNKHFGHSSVI---IAAHVDHQFRGPESEEDMKFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + K+ L Q AARD RY+ F+ + +HQ L +AHH
Sbjct: 69 QSYCEAEHILCETVQID-VSAYAKKYKLNKQAAARDCRYQFFEDLMTKHQAKFLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM + S + L+RP L KD++
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGMQPVREFASGW--------------LIRPFLYAEKDEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
+ C+ + D +N + RNR R ++ S Q V A Y+
Sbjct: 174 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QSLTKERMNKVIT 246
>gi|188584721|ref|YP_001916266.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349408|gb|ACB83678.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 509
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 43/233 (18%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
Y+ F + + +G ++ +GVSGGPDS+AL + + E L+
Sbjct: 6 YQNIFEKGLIKSG----DKVLVGVSGGPDSVALLHVLYELRQ----------ELQFKLVV 51
Query: 126 ITVDHGLREESKEE-ANIVSHRVSDMGIRCEIVRCDW--------LDGRPKQGHLQEAAR 176
++HG R++S EE A+ V D+ I+ W P+QG AR
Sbjct: 52 SHLNHGFRDKSAEEDADFVKKLAEDL--ELPIIYDKWQVKDYINYYKLSPQQG-----AR 104
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
RY+ F++ L + HH DDQ E F LRL R +G GL+GM F ++
Sbjct: 105 IQRYKFFEQAAKDFGATKLALGHHIDDQVETFFLRLIRGAGTQGLSGMQFIRKL------ 158
Query: 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
N+ +LL+RPLL+ SK ++ + Q + DPTN+ ++RN++R
Sbjct: 159 -------NNDLLLIRPLLEVSKSEIKEYLQTNKLKYKIDPTNQETNYLRNKVR 204
>gi|410943005|ref|ZP_11374746.1| cell cycle protein MesJ [Gluconobacter frateurii NBRC 101659]
Length = 414
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 128/297 (43%), Gaps = 44/297 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DS+AL L W+ ++A VDH LR ES EA + +
Sbjct: 37 VGLAVSGGGDSLALAWLAKRWR--------------HHVVAFVVDHALRVESAAEARLTA 82
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ MGI ++R L P +G LQE ARD R+ ++ C++ LL+AHH DQ
Sbjct: 83 RRLQAMGIDAHVLR---LAPFP-EGRLQERARDARFEALEEACVEAGCLDLLVAHHLHDQ 138
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E +R SG GLAGM + L+ I +VRP L + +
Sbjct: 139 DETVWMRQHAGSGPSGLAGMGAVA-------------LRGR-IRIVRPCLMLPPERLRAT 184
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSN 324
+ W+EDP+N++ F R R R L S + + + A R + +
Sbjct: 185 LRAAGLAWIEDPSNQNRRFERVRWRQDL----SPTQRDHAREWQVAAHVLRCSEDRELAR 240
Query: 325 LINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLL 381
++ E+ G+ L P I+D ++ + LV QR RP R L+
Sbjct: 241 VLAESAVWHSAGWV-----HLKPDGIKDNTIAALIRLV---SGQRYRPSREQVQALV 289
>gi|296282864|ref|ZP_06860862.1| ATPase [Citromicrobium bathyomarinum JL354]
Length = 288
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
A TVDHGLR ES +EA V+ +GI +R D G+LQ AR +RY
Sbjct: 13 AATVDHGLRPESADEAAFVARVCEGLGIPHATLRVD-----VSPGNLQANARAVRYEALG 67
Query: 185 KVCIQHQIG--VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
C Q+G V AHHADDQAE ++RL+R SG+ GLAG+ S F
Sbjct: 68 --CHFEQVGASVFATAHHADDQAETLLMRLNRGSGLAGLAGVRPWSVFFPEGII------ 119
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD---LSSCS 299
+++VRPLL + + ++ + + + V+DP+N F R R+R ++ D L +
Sbjct: 120 --EEMVMVRPLLGWRRGELAAVVRAAGIEAVDDPSNSDDAFDRARMRKAIADAEWLDPLA 177
Query: 300 FKSELQAVISACRRTRSYVEHVCSNLI 326
+ + A YV V + LI
Sbjct: 178 MARSARHLAEAEEAIGDYVSSVANQLI 204
>gi|115526688|ref|YP_783599.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodopseudomonas
palustris BisA53]
gi|115520635|gb|ABJ08619.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris BisA53]
Length = 343
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGGPDS+AL VL A W+ + E L+A+T+DHGLRE S EA V
Sbjct: 27 IVLAVSGGPDSLALMVLAARWRAA-LKRGPE-------LIAVTIDHGLREASAREARDVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++G+ + +R W +P G + AAR RY L K + AH DDQ
Sbjct: 79 KLAGNLGLPHKTLR--WRGDKPTSG-IPAAARAARYALLAKAARSTGATHIFTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RLSR SG+ GLA MA S+ C + L RPLL +K +
Sbjct: 136 AETVLMRLSRGSGLAGLAAMARQSE-------RC-------GLQLARPLLGIAKSQLIAT 181
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
++ DP+N P F R R+R
Sbjct: 182 LAKARIEFAVDPSNSDPRFTRPRLR 206
>gi|255262865|ref|ZP_05342207.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62]
gi|255105200|gb|EET47874.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62]
Length = 422
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 149/347 (42%), Gaps = 48/347 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DS AL + W NG A + A+TVDHG R E+K+EA VS
Sbjct: 32 VGVAVSGGSDSTALLLACVEWA----KSNGVA------VHAVTVDHGQRVEAKQEAIAVS 81
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++G+ I+ + L+ + Q ARD RY + ++ V+ + H ADD
Sbjct: 82 ELTAELGVEHSILTLETLEA---GANFQARARDARYAAMAQWAQARRLAVVAVGHTADDV 138
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE F++RL+R +GV GLA Q+ S+ H + VRPLL F + +
Sbjct: 139 AETFLMRLARGAGVDGLA------QMVGSW--------TAHEMSWVRPLLGFKRQALRDF 184
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSN 324
W +DP+N+S + R R L L+ + E ++A R S +V +
Sbjct: 185 LTAQRIVWSDDPSNQSIKYTRTAAREVLAALAPLGIEPETLRHVAASLRDASDALYVQTA 244
Query: 325 LINEAVTVMDQGYAV-IDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
AV D G A+ + + + I DI F+A + + P R +LL
Sbjct: 245 EAATAVFSQDAGGALTFETKAFHALPI-DIQRRLFMAAIRWIATRAYAPRRDEQKQLL-- 301
Query: 384 YIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSI-------DGPLP 423
R + T GC T A CS+I GP+P
Sbjct: 302 --RASESAVTATLGGCLF--------TNAAGCSTISREPAATQGPVP 338
>gi|359788655|ref|ZP_09291627.1| hypothetical protein MAXJ12_04854 [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255582|gb|EHK58489.1| hypothetical protein MAXJ12_04854 [Mesorhizobium alhagi CCNWXJ12-2]
Length = 435
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 117/241 (48%), Gaps = 34/241 (14%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148
VSGG DS AL +L + ++N A L+A+TVDHGLR +S EA V+
Sbjct: 24 VSGGSDSTALLLLLKAY----LDENAPAVR----LVAMTVDHGLRPDSAAEAQAVARFAE 75
Query: 149 DMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
GI I+ W +P G L AAR+ RY L + + +++ H ADDQAE
Sbjct: 76 SHGIAHRILA--WEGPKPATG-LPAAAREARYALLAEAAGEEGTDLIVTGHTADDQAETV 132
Query: 209 ILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGG 268
++R +R+ G GLAGMA + +F A+ +VRPLL+ ++ + +
Sbjct: 133 MMRQARSDG-RGLAGMA-PATLFDGKAW------------IVRPLLETRRETLRDYLRAN 178
Query: 269 NRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT---RSYVEHVCSNL 325
W+EDPTN + F R R R L D +++ +++A R R Y+ + L
Sbjct: 179 GVPWLEDPTNVNQAFERPRARARLRD------DADVSKLLTAARDAALLREYLGREAAGL 232
Query: 326 I 326
I
Sbjct: 233 I 233
>gi|433445447|ref|ZP_20409854.1| tRNA(Ile)-lysidine synthase [Anoxybacillus flavithermus TNO-09.006]
gi|432001095|gb|ELK21980.1| tRNA(Ile)-lysidine synthase [Anoxybacillus flavithermus TNO-09.006]
Length = 460
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 29/260 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDS+AL L W E + L+A VDH LR ++S+E+ + V
Sbjct: 21 VVVGVSGGPDSLAL--LHFLW--------SERERYDIQLVAAHVDHMLRGKQSEEDMHFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
H I CE + D + G +QEAARD RY F++V +H + +AHH D
Sbjct: 71 KHFCEQHSIICEATQLDVPAYMERTGKGVQEAARDCRYTFFEQVMYKHHAHCVALAHHGD 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++RL R S G AG+ S Y +VRP L + +
Sbjct: 131 DQIETVLMRLVRGSTTRGYAGIPVKRPFGSGY--------------IVRPFLCIDRRQIE 176
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 319
+ C+ DP+N + RNR R + + +Q +++E
Sbjct: 177 QYCRQNGLHARHDPSNEKDDYTRNRFRHFVLPFFKRENIRVHEHIQQFSEMMSEDEAFLE 236
Query: 320 HVCSNLINEAVTVMDQGYAV 339
+ + V ++G V
Sbjct: 237 QLTKEELKRVVHQQEEGIHV 256
>gi|170088506|ref|XP_001875476.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650676|gb|EDR14917.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 487
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 106/224 (47%), Gaps = 22/224 (9%)
Query: 81 PHHRIALGV--SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
P R +L V SGGPDS L L + + + I + TVDH L+++S +
Sbjct: 18 PSSRTSLAVANSGGPDSTCLLFLINRYLLEHPGSSSQPQRVI----SFTVDHDLQKKSSD 73
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDG----RPKQGHLQE-AARDMRYRLFQKVCIQHQIG 193
AN +G+ + W +G RP G + E ARD RY L + + +
Sbjct: 74 MANHCRLFAQSIGVEHITSKIPWGEGVYPPRPSPGDMFERTARDARYALLLQTLTRADVD 133
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGM------AFSSQIFS-SYAYSCHDDLKNHS 246
VL + HHADDQ E ++RL S LG GM + I S +++ H K S
Sbjct: 134 VLAVGHHADDQVETALMRLGMGSTQLGAGGMRACRRWGMGAGIDERSLSWAGH---KGMS 190
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIR 289
+VRPLLD KD + C+ N +++ DPTN P + +RN IR
Sbjct: 191 KWIVRPLLDVGKDRILATCEQNNLEYITDPTNFQPHITIRNAIR 234
>gi|52078562|ref|YP_077353.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|404487432|ref|YP_006711538.1| tRNA(Ile)-lysidine synthase TilS [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|61216472|sp|Q65PF4.1|TILS_BACLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|52001773|gb|AAU21715.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52346426|gb|AAU39060.1| tRNA(Ile)-lysidine synthase TilS [Bacillus licheniformis DSM 13 =
ATCC 14580]
Length = 476
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 118/263 (44%), Gaps = 30/263 (11%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146
GVSGGPDSMAL L A T + L+A VDH R EES+ + V
Sbjct: 23 GVSGGPDSMAL--LHALHHTVPASAT---------LIAAHVDHMFRGEESERDMRFVQDY 71
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
GI+CE V+ D L + + Q AAR+ RY FQ++ +H+ L++ HH DDQ
Sbjct: 72 CEAEGIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQV 131
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E ++++++ + +GLAG+ + S + L+RP L SKDD+ C
Sbjct: 132 ETMLMKMAKGTVGIGLAGIQPKRRFDSGW--------------LLRPFLKLSKDDLLAYC 177
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 322
+ + DP+N + RNR R + S Q+V Y++ +
Sbjct: 178 KENRIPFRTDPSNSEDDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTEDELYLQALT 237
Query: 323 SNLINEAVTVMDQGYAVIDLEIL 345
+ +N +T I +E L
Sbjct: 238 KDKMNTVITSKSSSGVEISIERL 260
>gi|160872844|ref|ZP_02062976.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella
grylli]
gi|159121643|gb|EDP46981.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella
grylli]
Length = 458
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 19/170 (11%)
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAA-RDMR 179
+ L AI ++HGL S + A I H + I CEIV LD RPK G EA+ R+ R
Sbjct: 44 ERLRAIHINHGLHIHSDKWAKICRHACEKLTIDCEIVT---LDIRPKTGESLEASLREAR 100
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y +K LL AHH +DQAE F+L+L R +G+ GL M F +
Sbjct: 101 YHAIEKKIPAG--NFLLTAHHRNDQAETFLLQLFRGAGLKGLISMPFCRPL--------- 149
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+++ L+RPLL+F++ ++Y Q + W+ED +N++ F RN IR
Sbjct: 150 ----TNNVYLMRPLLNFTRQELYAYAQTHHLTWIEDDSNKNQRFSRNFIR 195
>gi|300775911|ref|ZP_07085771.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC
35910]
gi|300505461|gb|EFK36599.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC
35910]
Length = 449
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 31/268 (11%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEAN 141
H L VSGG DSM L L F Q + +F +++ LR +S +
Sbjct: 21 HTFLLAVSGGVDSMVLASLFRD-----FGQEIQDSKF--RFQVAHINYKLRGNDSDLDQK 73
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V I+ + D +P + +Q AR++RYR F+ + + ++ L+ AHH
Sbjct: 74 TVQDFCEKNHIKFHLYEVSEKDQKP-ENSIQLWARELRYRFFKTIQEKEKLEFLVTAHHL 132
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQ E FI+ LS+ +G+ GL+G+ HD+ ++RPLL+FSK ++
Sbjct: 133 NDQLETFIINLSKAAGINGLSGIP------------SHDN------NILRPLLNFSKKEI 174
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
Y+ + + ++ ED +N+ ++RN+IR + + ++ F + S +T+ +V
Sbjct: 175 YQFAELNHIEFREDLSNKKNDYLRNKIRNQIVPMLMETNDHFLDNFRKSSSLLNQTKDFV 234
Query: 319 EHVCSNLINEAVTVMDQGYAVIDLEILN 346
+ + N +TV +Q Y ++ E LN
Sbjct: 235 QKQIQEIEN-NLTVFNQDYKILSKEKLN 261
>gi|384262177|ref|YP_005417363.1| PP-loop protein [Rhodospirillum photometricum DSM 122]
gi|378403277|emb|CCG08393.1| PP-loop protein [Rhodospirillum photometricum DSM 122]
Length = 247
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 35 PFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAF--SRRMAMAGLKPHHRIALGVSGG 92
P T S +PS + + V L E + SR + +P +A+ VSGG
Sbjct: 8 PPTPSNGVPSRKSGGLAADPPKVPALPQTAPALEPWFGSRLEGLGPFEPAPALAVAVSGG 67
Query: 93 PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI 152
DS+ L LT W G + A+ V+HGLR + EA V + G
Sbjct: 68 VDSLTLLALTCRWA------RARGGRVV----ALCVNHGLRAAAAGEAARVQRQAEAWGA 117
Query: 153 RCEIV-RCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211
I+ R D RP Q LQE AR R+ ++ C + LL+AHH +DQAE + R
Sbjct: 118 EGIILTRPD----RPPQTSLQEEARIFRHAALEEACRARGVLHLLLAHHQNDQAETVLER 173
Query: 212 LSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271
L+R+SG GLA MA + + L+RP LD K +
Sbjct: 174 LARSSGPDGLAAMASITH--------------RPGVRLLRPFLDVPKTALVATAHALGLS 219
Query: 272 WVEDPTNRSPLFVRNRIR 289
W EDP+N+ P F R R R
Sbjct: 220 WDEDPSNQDPRFERARWR 237
>gi|296448863|ref|ZP_06890695.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b]
gi|296253629|gb|EFH00824.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b]
Length = 313
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 90/194 (46%), Gaps = 27/194 (13%)
Query: 96 MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCE 155
MAL +L A W + + TVDHGLR E+ EEA V +G
Sbjct: 1 MALMLLAARWSLRETKR----------IAVATVDHGLRPEAAEEARRVGEWARALGFEHH 50
Query: 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215
I+R W +G + +QE ARD RYRL ++ AHHADDQAE + RL+R
Sbjct: 51 ILR--W-EGEKPRSRIQERARDARYRLLADCARTVGASAIVAAHHADDQAETILFRLTRG 107
Query: 216 SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVED 275
SGV GLAGMA +S++ LL K + +C+ + + D
Sbjct: 108 SGVAGLAGMAPASRLDGLALLRP--------------LLGLRKQALEALCEAAGQPFFRD 153
Query: 276 PTNRSPLFVRNRIR 289
P+N +P + R R+R
Sbjct: 154 PSNENPAYARVRLR 167
>gi|296809924|ref|XP_002845300.1| PP-loop family protein [Arthroderma otae CBS 113480]
gi|238842688|gb|EEQ32350.1| PP-loop family protein [Arthroderma otae CBS 113480]
Length = 717
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/432 (25%), Positives = 164/432 (37%), Gaps = 87/432 (20%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL--LAITVDHGLREESKE 138
P RI L VSGG DSMAL L + + +FI GL A VDH R ES
Sbjct: 38 PLQRIGLAVSGGSDSMALAYLCS---------RLVSPDFIPGLDLKAYIVDHKFRPESSR 88
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA++V+ R+ +GI+ +++ W G + + AR +RY+ K C I LL+
Sbjct: 89 EAHLVADRIEKLGIQSKVLTIPWPAGETLTKNGFETQARMLRYQALGKACAADSIRALLL 148
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQI----------FSSYAYSCHD------- 240
HH DD E ++R+S+ LGL G + I S + S D
Sbjct: 149 GHHQDDNVETALMRVSKGHRKLGLIGFDEIAPIPECHGLYGVSKSGFTASLQDIVESTNM 208
Query: 241 -----------------------DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPT 277
+ + L+RP FSK + CQ +V D T
Sbjct: 209 DGTVPYPSSRIIARNINSTSGQMQISTGGVYLLRPFRSFSKPRLVATCQDNKIPFVSDST 268
Query: 278 NRSPLF-VRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH---VCSNLINEAVTV- 332
N F +RN +R L + +++S ++R + E +C +L+ + +
Sbjct: 269 NEDRTFTIRNTVRQLLESEDLLPRALQRPSILSLVDKSREHTEKFRLLCDSLLKKVEILN 328
Query: 333 -------------------MDQGYAVIDLEILNPSKIEDIFLSKFLAL--VLQFICQRQR 371
DQ AV D + P I DI+ S +L ++ R
Sbjct: 329 FDTHFGTLVIKMPAMSELPQDQRKAV-DKQTSLPDGIRDIYASVMRSLCDIISPYPDRWS 387
Query: 372 PV---RGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLEL 428
P+ R K L + + T T G G K+ V S+ LP L++
Sbjct: 388 PLSHFRNPACKAFLGFDPSGMNGTVFTVGGVLWQSIKQKSGRKS-VSKSLPPNLPGNLQV 446
Query: 429 ----FQIHSDGE 436
F SDG+
Sbjct: 447 QNQEFSPFSDGQ 458
>gi|209965092|ref|YP_002298007.1| tRNA(Ile)-lysidine synthetase, TilS [Rhodospirillum centenum SW]
gi|209958558|gb|ACI99194.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum
centenum SW]
Length = 453
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 147/302 (48%), Gaps = 36/302 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+GVSGG DS+AL +L W + G +LA+TVDH LR ES EA V
Sbjct: 33 LAVGVSGGRDSLALVLLADAWAR---ARGGS-------VLALTVDHALRPESAAEAAQVG 82
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++ GIR ++R W +G+ G +Q+AAR RY L + C LL+ H +DQ
Sbjct: 83 AWMAARGIRHAVLR--W-EGQKPSGGVQQAARAARYALLEARCRAEGALHLLLGHQREDQ 139
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +LR +R+SG GLAGMA ++ + L+RPLLD + +
Sbjct: 140 AETVLLRAARSSGPDGLAGMAAVREL--------------AGLRLLRPLLDIPRVRLAAT 185
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSN 324
C+ + W++DP+N S F R R+R + + + Q ++A RTR+ ++ +
Sbjct: 186 CEALGQPWLDDPSNLSDRFARGRLRRA----GAAGTEEPWQRALAAG-RTRAALDDAAAA 240
Query: 325 LINEAVTVMDQGYAVIDLEIL-NPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLH 383
++ + +G+ + L +P ED+ + L +LQ + P R + LL
Sbjct: 241 VLAGQAALYPEGWGEVAAAALCDPP--EDVA-RRVLLRLLQVVGGAALPPRSARLDRLLA 297
Query: 384 YI 385
+
Sbjct: 298 AL 299
>gi|359408654|ref|ZP_09201122.1| tRNA(Ile)-lysidine synthetase [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356675407|gb|EHI47760.1| tRNA(Ile)-lysidine synthetase [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 447
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 105/235 (44%), Gaps = 28/235 (11%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV 147
VSGGPDS+AL ++ A EA + A+ +DHGLR E+ EA V+ +
Sbjct: 33 AVSGGPDSLALALVAA-------EVCAEASVRFE---AVVIDHGLRAEAATEAQQVASAL 82
Query: 148 SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207
+ I RC + G Q AR R ++ Q VL AHH DDQAE
Sbjct: 83 TRRNI---PARCFSVSGPAPVSGRQAWARMKRLQILCDYARQRGSAVLF-AHHRDDQAET 138
Query: 208 FILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQG 267
++RLSR SG+ GL+ +A AYS + ++ RP L SK D+ +CQ
Sbjct: 139 VLMRLSRGSGLAGLSAIA---------AYSLY-----QGVVFGRPFLGLSKGDLIAVCQA 184
Query: 268 GNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 322
D+V DP+N P F R R R L + ++ + + V+ C
Sbjct: 185 YGADFVTDPSNADPTFERVRTRQLLQRADQAPLRQQMMRLAAVASSVTEQVKGEC 239
>gi|319648591|ref|ZP_08002805.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2]
gi|317389358|gb|EFV70171.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2]
Length = 469
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 118/263 (44%), Gaps = 30/263 (11%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146
GVSGGPDSMAL L A T + L+A VDH R EES+ + V
Sbjct: 16 GVSGGPDSMAL--LHALHHTVPASAT---------LIAAHVDHMFRGEESERDMRFVQDY 64
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
GI+CE V+ D L + + Q AAR+ RY FQ++ +H+ L++ HH DDQ
Sbjct: 65 CEAEGIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQV 124
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E ++++++ + +GLAG+ + S + L+RP L SKDD+ C
Sbjct: 125 ETMLMKMAKGTVGIGLAGIQPKRRFDSGW--------------LLRPFLRLSKDDLLAYC 170
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 322
+ + DP+N + RNR R + S Q+V Y++ +
Sbjct: 171 KENRIPFRTDPSNSEDDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTEDELYLQALT 230
Query: 323 SNLINEAVTVMDQGYAVIDLEIL 345
+ +N +T I +E L
Sbjct: 231 KDKMNTVITSKSSSGVEISIERL 253
>gi|433772714|ref|YP_007303181.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium australicum WSM2073]
gi|433664729|gb|AGB43805.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium australicum WSM2073]
Length = 455
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 20/228 (8%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
LLA+T+DHGLR+ S +EA V+ +D I ++ W +P G L AAR+ RY+L
Sbjct: 52 LLAVTIDHGLRQGSADEARTVAKLCADRDIAHRMLA--WSGAKPSTG-LPAAAREARYQL 108
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV----LGLAGMAFSSQIFSSYAYSC 238
IG+++ H ADDQAE ++R RN GLAGMA ++
Sbjct: 109 LASAARAEGIGLIVTGHTADDQAETVLMRRDRNDATRDEGRGLAGMAPAT---------- 158
Query: 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSC 298
L + +VRPLL +D + + W EDPTN F R R+R +L +
Sbjct: 159 ---LHDWRDWIVRPLLGVRRDALRDFLRRQQVGWAEDPTNADEAFERTRMRAALAGEAGA 215
Query: 299 SFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN 346
++ A+ + R+ + + LI + G +D +L
Sbjct: 216 QRMNDALALAARQAGDRTRLGGEAARLIERFASQPAAGLIRLDPALLG 263
>gi|423680460|ref|ZP_17655299.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis WX-02]
gi|383441566|gb|EID49275.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis WX-02]
Length = 476
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 118/263 (44%), Gaps = 30/263 (11%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146
GVSGGPDSMAL L A T + L+A VDH R EES+ + V
Sbjct: 23 GVSGGPDSMAL--LHALHHTVPASAT---------LIAAHVDHMFRGEESERDMRFVQDY 71
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
GI+CE V+ D L + + Q AAR+ RY FQ++ +H+ L++ HH DDQ
Sbjct: 72 CEAEGIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQV 131
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E ++++++ + +GLAG+ + S + L+RP L SKDD+ C
Sbjct: 132 ETMLMKMAKGTVGIGLAGIQPKRRFDSGW--------------LLRPFLRLSKDDLLAYC 177
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 322
+ + DP+N + RNR R + S Q+V Y++ +
Sbjct: 178 KENRIPFRTDPSNSEDDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTEDELYLQALT 237
Query: 323 SNLINEAVTVMDQGYAVIDLEIL 345
+ +N +T I +E L
Sbjct: 238 KDKMNTVITSKSSSGVEISIERL 260
>gi|114765728|ref|ZP_01444826.1| Probable cell cycle protein [Pelagibaca bermudensis HTCC2601]
gi|114541945|gb|EAU44980.1| Probable cell cycle protein [Roseovarius sp. HTCC2601]
Length = 448
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 111/236 (47%), Gaps = 26/236 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGG DSMA+ L W A + L +TVDHGLR E+ EA +V
Sbjct: 28 IVLAVSGGGDSMAMLTLAHNW----------AHVWGTRLWVVTVDHGLRPEAGNEAALVR 77
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++G +R W DG QG+L +AAR R L + + + +L+AH DD
Sbjct: 78 ETCDELGHPHTTLRWRW-DG---QGNLMDAARRARLDLIGR--WRGGLSHVLLAHTRDDV 131
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS----------ILLVRPLL 254
AE F++RL+R SGV GL+ M ++ + A + + + + +VRP L
Sbjct: 132 AETFLMRLARGSGVDGLSAMTPLREVAETGATPLDPEACDGARPPEAAVPSGLTIVRPCL 191
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 310
D + ++ + WVEDPTN + R RIR L L + +E A +
Sbjct: 192 DMRRAELRHYLRVLKGRWVEDPTNEDDHYERARIRKLLRGLEAEGLGAETLAATAG 247
>gi|154296481|ref|XP_001548671.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10]
Length = 627
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 112/259 (43%), Gaps = 52/259 (20%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTG--GFNQNGEAGEF--IDGLLAITVDHGLREESK 137
H + L VSGG DSMAL L K F +G ID A+ V+HG+R+ S
Sbjct: 33 HRTVGLAVSGGVDSMALAALCMQMKKNYIPFASDGYPIHLGKID-FRAVIVNHGVRDGSL 91
Query: 138 EEANIVSHRVSDMGIRCEIVRCDW--LDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGV 194
EEA V + +G+ I+ W + G P Q + + AR R++ K C + I
Sbjct: 92 EEAQKVMGVLESLGMTSRILTLPWKEITGNPSQLPNFESLARKYRFQAIGKYCQKSDISS 151
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHD------------- 240
+L+ HHADDQAE ++RL++ + +GL G+ SS I Y H+
Sbjct: 152 ILLGHHADDQAETVLMRLAKGARGVGLLGIKSSSPIPECEGIYGVHESGNPITLALPIKS 211
Query: 241 -----------------------------DLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271
++++ I L RPLL+F K+ + C+ +
Sbjct: 212 KQGTKWTNIIEKDDGDQPASGVLKIMPQLEVESGGITLYRPLLEFPKERLIATCKALGVE 271
Query: 272 WVEDPTNRSPLFV-RNRIR 289
W ED TN P RN IR
Sbjct: 272 WFEDNTNSDPTLTDRNAIR 290
>gi|386683444|gb|AFJ19490.1| mitochondrial tRNA(Ile)-lysidine synthetase [Peltigera membranacea]
Length = 596
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 107/248 (43%), Gaps = 43/248 (17%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGG DSMAL L T E + A VDH R S +EAN V
Sbjct: 32 RIGIAVSGGVDSMALARLC----TELTKLPEELQRWNFHFTAFVVDHRARPNSSKEANSV 87
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+++ G+R I+ +W Q + + AR +RY+ C +I LL+AHH D
Sbjct: 88 RNQLQTWGLRTIILPLEWSGIHAAQLPNFETQARRLRYQALGNACRDRRIQSLLLAHHED 147
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQI-------------------------------F 231
DQAE +LRL++ +GL GM ++QI F
Sbjct: 148 DQAETLLLRLAQGHRGIGLTGMQETAQIPECCGIHGVHQSGSKEFGVEIPTVESLDRASF 207
Query: 232 S---SYAYSCHDD---LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV- 284
S S + D ++ I + RPLLDFSK + C+ W ED TNR P
Sbjct: 208 SNTISRRFQKADSPMPFEDGGIQIHRPLLDFSKQRLKATCEWYKVRWFEDETNRDPTRTP 267
Query: 285 RNRIRMSL 292
RN +R L
Sbjct: 268 RNAVRQLL 275
>gi|395785057|ref|ZP_10464791.1| tRNA(Ile)-lysidine synthetase [Bartonella tamiae Th239]
gi|423718042|ref|ZP_17692232.1| tRNA(Ile)-lysidine synthetase [Bartonella tamiae Th307]
gi|395425569|gb|EJF91730.1| tRNA(Ile)-lysidine synthetase [Bartonella tamiae Th239]
gi|395426475|gb|EJF92602.1| tRNA(Ile)-lysidine synthetase [Bartonella tamiae Th307]
Length = 448
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 104/210 (49%), Gaps = 25/210 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DS AL L + ++Q + +LA+TVDH LR ES EA V+
Sbjct: 21 VIVAISGGSDSTALLFLLRDF-LAKWDQAPK-------ILAVTVDHRLRPESALEAEQVA 72
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+GI + V C W+DGR + G L AR RY L + ++L H +DQ
Sbjct: 73 SLCQKIGIEHQTV-C-WVDGRGQSG-LSHQARIARYGLLVSQAEKSNADMILTGHTLNDQ 129
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE + +RL R G GLA M S L I L+RPLL+ ++++
Sbjct: 130 AETYQMRLYRGKG-RGLACMPRES-------------LLMRKIRLIRPLLNIKREELRHY 175
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 294
+DW++DPTN +P + R RIR SL +
Sbjct: 176 LLTKKQDWIDDPTNENPHYERVRIRQSLSE 205
>gi|146276617|ref|YP_001166776.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025]
gi|145554858|gb|ABP69471.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025]
Length = 412
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 143/318 (44%), Gaps = 40/318 (12%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
GL+ + L VSGG DSMAL L A E A+TVDHGLR E+
Sbjct: 12 GLREVRALGLAVSGGGDSMALLHLAA--------------EAGIAARAVTVDHGLRPEAA 57
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA V + +G+ +I+R + DGR G+L + AR R RL + + + +
Sbjct: 58 AEALEVGRVCTRLGVPHDILRWEGWDGR---GNLMDQARRARLRLISEWARGAGLDAVAL 114
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
H DD AE F++RL+R +GV GLA M + + +L +RPLL
Sbjct: 115 GHTRDDVAETFLMRLARGAGVDGLAAM--------------RAERRAEGMLWLRPLLGIG 160
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 317
++++ + + W EDP+N + F R R+R ++ L+ E A ++ +
Sbjct: 161 REELREELRRRGAAWFEDPSNENRAFDRVRVRQAMQGLAGLGLGPERLAEVAG---HLAE 217
Query: 318 VEHVCSNLINEAVTVM---DQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVR 374
V ++EA + D+G ++ +L+ + D L + L +Q++ + R
Sbjct: 218 VRAALDAQLHEAARTLVRVDRGDVLMAPGVLD---LPDEILRRLLRGAVQWVASAEYGPR 274
Query: 375 GSTSKLLLHYIRTFPCKT 392
G L+ +R +T
Sbjct: 275 GPALARLMRDLRQGKGRT 292
>gi|254555612|ref|YP_003062029.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1]
gi|254044539|gb|ACT61332.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1]
Length = 448
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 29/224 (12%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+R++A A L P + + VS G DSM L L Q A E ++A
Sbjct: 5 QKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLL---------QRLPAAERPRVVVA- 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQK 185
V+H LRE+S+ EA+ + ++ +V DWL PK G ++ A R RY +F K
Sbjct: 55 HVNHHLREQSQMEADYLRQYCQQQNLK--LVMADWLPAAHPKSG-IEAAGRQFRYHVFAK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +++ +L AHHA+DQ E ++++L+R + L G+A +S+ F++
Sbjct: 112 VMRENRATAVLTAHHANDQVETYLMKLARGGDISQLTGIA-TSRPFATGR---------- 160
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL +SKD + + + ED TN+ RNRIR
Sbjct: 161 ---LIRPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVALTRNRIR 201
>gi|46201289|ref|ZP_00055345.2| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
cell cycle control [Magnetospirillum magnetotacticum
MS-1]
Length = 429
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 129/263 (49%), Gaps = 28/263 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ VSGG DS+AL +L A W + GE +LA+TVDH LR +S EA V
Sbjct: 12 RLAVAVSGGADSLALALLAAQWAR---ARGGE-------VLALTVDHRLRPDSTAEAERV 61
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ GI I+ W +P LQ AAR RYRL + C I LL+AHH DD
Sbjct: 62 GEWLGGEGIAHRIL--AWEGDKPAA-DLQAAARAARYRLLGEACAAEGILHLLVAHHQDD 118
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE +LRL R SG+ GL+ MA L+RPLL + +
Sbjct: 119 QAETLLLRLGRGSGLDGLSAMAPERPTAWGR--------------LLRPLLVVPRARLEA 164
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVC 322
+ +DWV+DP+NR+ F R R+R GDL++ ++ L R ++ V+ +
Sbjct: 165 FLRHRGQDWVQDPSNRNEAFARVRLRRLAGDLAAEGMTAQRLGQTAGRLARAQTAVDAMV 224
Query: 323 SNLINEAVTVMDQGYAVIDLEIL 345
+ VT+ GYA + ++L
Sbjct: 225 AEAAARHVTLDPAGYARLQPKVL 247
>gi|423485315|ref|ZP_17462002.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6X1-2]
gi|401135892|gb|EJQ43488.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6X1-2]
Length = 476
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVEGLCKELGVICETLRINVSQYQQQYGMNTQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C G DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNGLKVVPRIDPSNKKEVYTRNRLR 207
>gi|300768962|ref|ZP_07078853.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|380031556|ref|YP_004888547.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum WCFS1]
gi|448820213|ref|YP_007413375.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum ZJ316]
gi|61216640|sp|Q88Z33.1|TILS_LACPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|300493483|gb|EFK28660.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|342240799|emb|CCC78033.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum WCFS1]
gi|448273710|gb|AGE38229.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum ZJ316]
Length = 448
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 29/224 (12%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+R++A A L P + + VS G DSM L L Q A E ++A
Sbjct: 5 QKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLL---------QRLPAAERPRVVVA- 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQK 185
V+H LRE+S+ EA+ + ++ +V DWL PK G ++ A R RY +F K
Sbjct: 55 HVNHHLREQSQMEADYLRQYCQQQNLK--LVMADWLPAAHPKSG-IEAAGRQFRYHVFAK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +++ +L AHHA+DQ E ++++L+R + L G+A +S+ F++
Sbjct: 112 VMRENRATAVLTAHHANDQVETYLMKLARGGDISQLTGIA-TSRPFATGR---------- 160
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL +SKD + + + ED TN+ RNRIR
Sbjct: 161 ---LIRPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVALTRNRIR 201
>gi|418274211|ref|ZP_12889709.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376009777|gb|EHS83103.1| tRNA(Ile)-lysidine synthase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 448
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 29/224 (12%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+R++A A L P + + VS G DSM L L Q A E ++A
Sbjct: 5 QKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLL---------QRLPAAERPRVVVA- 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQK 185
V+H LRE+S+ EA+ + ++ +V DWL PK G ++ A R RY +F K
Sbjct: 55 HVNHHLREQSQMEADYLRQYCQQQNLK--LVMADWLPAAHPKSG-IEAAGRQFRYHVFAK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +++ +L AHHA+DQ E ++++L+R + L G+A +S+ F++
Sbjct: 112 VMRENRATAVLTAHHANDQVETYLMKLARGGDISQLTGIA-TSRPFATGR---------- 160
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL +SKD + + + ED TN+ RNRIR
Sbjct: 161 ---LIRPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVALTRNRIR 201
>gi|308179642|ref|YP_003923770.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045133|gb|ADN97676.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 448
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 29/224 (12%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+R++A A L P + + VS G DSM L L Q A E ++A
Sbjct: 5 QKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLL---------QRLPAAERPRVVVA- 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQK 185
V+H LRE+S+ EA+ + ++ +V DWL PK G ++ A R RY +F K
Sbjct: 55 HVNHHLREQSQMEADYLRQYCQQQNLK--LVMADWLPAAHPKSG-IEAAGRQFRYHVFAK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +++ +L AHHA+DQ E ++++L+R + L G+A +S+ F++
Sbjct: 112 VMRENRATAVLTAHHANDQVETYLMKLARGGDISQLTGIA-TSRPFATGR---------- 160
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL +SKD + + + ED TN+ RNRIR
Sbjct: 161 ---LIRPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVALTRNRIR 201
>gi|157690849|ref|YP_001485311.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032]
gi|157679607|gb|ABV60751.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032]
Length = 467
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDSM L + G F L+A VDH R EES + V
Sbjct: 20 VIVGVSGGPDSMLLLHELNKRRKGSFQ-----------LIAAHVDHMFRGEESFVDLAFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ GI E R + K+ HL Q AAR+ RY F+++ +++ + +AHH
Sbjct: 69 EAYCKEQGIPFESARIQ-VTQYAKENHLNKQAAARECRYAFFRQLMERYKAQFIALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL+R + +GLAG+ + L+RPL+ +SKDD+
Sbjct: 128 DDQVETMMMRLARGTVGIGLAGIQAKRPYQDGW--------------LIRPLIGYSKDDV 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
C+ + +V D +N + ++RNRIR + + + Q V Y+
Sbjct: 174 LTACEQAHIPYVIDQSNHTDDYLRNRIRRHILPVLKEEAPHVHESFQFVSDMLTEDEQYL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QALTKEQMNQVIT 246
>gi|392329391|ref|ZP_10274008.1| tRNA(Ile)-lysidine synthetase [Streptococcus canis FSL Z3-227]
gi|391420193|gb|EIQ83003.1| tRNA(Ile)-lysidine synthetase [Streptococcus canis FSL Z3-227]
Length = 428
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 141/342 (41%), Gaps = 54/342 (15%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
M Y+E ++ A HHR+ + VSGG DSM L ++ + G A
Sbjct: 1 MMTYQEIYNEIQKQAYFDKHHRVLIAVSGGVDSMNLLHFLHLYQENFQIRIGIAH----- 55
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
V+H R ES E + D I I + +G+ + +AARD RY+
Sbjct: 56 -----VNHKQRAESDMEETYLRAWAQDHNIPIYI---SYFEGKFSE----KAARDWRYKF 103
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
FQK+ + L+ AHH DDQAE ++RL R S + L+G+ S Q F +
Sbjct: 104 FQKIMKREGYSALVTAHHLDDQAETIMMRLIRGSRLRHLSGIK-SVQSFGTGQ------- 155
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
L+RP L FSK D+ KI ED +N F+RNRIR + L +
Sbjct: 156 ------LIRPFLSFSKTDLPKIFH------FEDTSNEKTDFLRNRIRKNYLPLLNQENPQ 203
Query: 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDL-EILN-PSKIEDIFLSKFLA 360
+Q + +NL+ +A T + V +L E N P ++ L +L
Sbjct: 204 FVQGLNQLA---------FENNLLFQAFTALTSKITVTNLVEFHNQPISVQYFLLQNYLE 254
Query: 361 LVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLC 402
V+ S K LLH I+T +G YL
Sbjct: 255 NFPDL------HVKKSQFKQLLHLIQTAKQGYYPLKSGYYLL 290
>gi|377809049|ref|YP_005004270.1| tRNA(Ile)-lysidine synthetase [Pediococcus claussenii ATCC BAA-344]
gi|361055790|gb|AEV94594.1| tRNA(Ile)-lysidine synthetase [Pediococcus claussenii ATCC BAA-344]
Length = 450
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREES 136
G P + L +SGG DSM L N E + + I V+H LRE+S
Sbjct: 13 GFNPRDTVILAISGGVDSMVLL-----------NVFLELAKQTHMTIVIAHVNHQLREQS 61
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E + + ++ EI W G + ++EAAR+ RY F V ++Q G +
Sbjct: 62 TLEEQFLKEWAAKHHVQIEI--AHWQVGLTIKTSVEEAARNFRYNFFADVMKKYQAGYVA 119
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AH+ +DQAE F+++L R G++G G + F S ++RP+L+F
Sbjct: 120 TAHNLNDQAETFLMKLVR-GGIVGELGAIQAKHNFGSGE-------------IIRPMLEF 165
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
K + K+ N +W ED TN S ++RNRIR
Sbjct: 166 PKKYIKKVAVAENIEWYEDETNGSDDYLRNRIR 198
>gi|415883960|ref|ZP_11545989.1| cell cycle protein MesJ [Bacillus methanolicus MGA3]
gi|387591755|gb|EIJ84072.1| cell cycle protein MesJ [Bacillus methanolicus MGA3]
Length = 462
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 119/268 (44%), Gaps = 37/268 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS+AL L W+ E ++A VDH R +ES E+A V
Sbjct: 22 ILVGVSGGPDSLAL--LHYLWRL--------KDERNLQIVAGHVDHMFRGDESYEDALFV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
GI E+ R + + K G Q AARD RY F+K+ +H + L + HH D
Sbjct: 72 KDFCEKRGILFEMSRINVPEYIKKSGKSPQAAARDCRYNFFKKIMKKHGLRYLALGHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++RL+R S AG++F H ++RP L S+ D+
Sbjct: 132 DQIETILMRLTRGSSGTARAGISFQRAF--------------HDGKIIRPFLGISRQDIE 177
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR-------TR 315
+ C+ + DP+N ++VRNR R L KSE V +R
Sbjct: 178 EYCKRHGLEPRLDPSNEKNIYVRNRFRHHLLPF----LKSENPQVHEHFQRFSEDLECDE 233
Query: 316 SYVEHVCSNLINEAVTVMDQGYAVIDLE 343
Y++ + +N + +Q ID++
Sbjct: 234 KYLQELTVEKMNTVIMNKEQDRVTIDID 261
>gi|387928162|ref|ZP_10130840.1| tRNA(Ile)-lysidine synthetase [Bacillus methanolicus PB1]
gi|387587748|gb|EIJ80070.1| tRNA(Ile)-lysidine synthetase [Bacillus methanolicus PB1]
Length = 462
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 121/280 (43%), Gaps = 31/280 (11%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
EAF +R M + I +GVSGGPDS+AL L W+ E ++A
Sbjct: 7 EAFLKRHNMN--LANKDILVGVSGGPDSLAL--LHYLWRL--------KDERNLNIVAGH 54
Query: 128 VDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQK 185
VDH R ES E+A V GI E+ R + + + G Q AARD RY F K
Sbjct: 55 VDHMFRGNESYEDALFVKDFCEKRGIAFEMSRINVPEYIERSGKSPQAAARDCRYNFFIK 114
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+ +H + L + HH DDQ E ++RL+R S AG++F H
Sbjct: 115 IMKKHGLRFLALGHHGDDQIETILMRLTRGSSGTARAGISFQRPF--------------H 160
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKS 302
++RP L S+ D+ + C+ + DP+N ++VRNR R + +
Sbjct: 161 DGKIIRPFLGISRRDIDEYCKRHGLEPRLDPSNNKNIYVRNRFRHHVLPFLHSENPQVHE 220
Query: 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDL 342
Q R Y++ + +N+ + +Q ID+
Sbjct: 221 HFQRFSEDLERDEKYLQELTVEKMNKVIINKEQDRVTIDI 260
>gi|299820646|ref|ZP_07052535.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601]
gi|299817667|gb|EFI84902.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601]
Length = 646
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 33/277 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L + +I + VSGGPDS+AL + + + A+ V+H LR ES +
Sbjct: 18 LDRNKKILVAVSGGPDSLALLHFIVRFFP------------LQNIAAVHVNHQLRAESLD 65
Query: 139 EANIVSHRVSDMGIR--CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E +V +G+ + + K+G ++EAAR +RY+ F++V + I ++
Sbjct: 66 EETLVHDSCQTLGVDLFSRTIDVKAIAAERKKG-IEEAARYVRYQCFEEVMQEAGIDQVV 124
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AHHADDQ E ++RL R S G +G+A ++ + ++RP L
Sbjct: 125 TAHHADDQVETIMMRLVRGSFSSGWSGIAPVRKLGAGQ--------------VIRPFLTA 170
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRR 313
SK D+ CQ + + D TN +F RNR+R + L + S S++ R
Sbjct: 171 SKSDILAYCQRQDIQFALDDTNEETIFTRNRLRKKVIPLLKAENPSLASQITRFAEETRE 230
Query: 314 TRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKI 350
++++ L EA ++ G A +DL +L + I
Sbjct: 231 DFTFLDEQAGELF-EACAELENGGARLDLVLLKKAGI 266
>gi|357385481|ref|YP_004900205.1| tRNA(Ile)-lysidine synthetase [Pelagibacterium halotolerans B2]
gi|351594118|gb|AEQ52455.1| tRNA(Ile)-lysidine synthetase [Pelagibacterium halotolerans B2]
Length = 437
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 121/284 (42%), Gaps = 45/284 (15%)
Query: 74 MAMAGLKPH---------HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL 124
MA+ GL PH + L VSGG DS+AL +L A W +G+ +
Sbjct: 7 MALCGLDPHALFAPVANCQTVGLAVSGGADSLALMLLYAAW-------SGDRPRAV---- 55
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
TVDH LR E++ EA +V G+ C + W +P G Q AAR RYRL
Sbjct: 56 VYTVDHRLRPEAQAEAAMVVAEAEKPGLTCRSLV--WDGPKPSSGK-QSAARSARYRLMA 112
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
K VL+ AHH DQAE ++RL+ SGV GLAGM S +
Sbjct: 113 KAMAADGAEVLVTAHHLRDQAETVLMRLAHGSGVTGLAGMRDFSVV-------------- 158
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF---- 300
+ + RPLL + + + V DP+N P + R R R +L L
Sbjct: 159 EGVEVFRPLLGVPAETLATLVARAGLSPVHDPSNADPAYERTRWRNALPALGELGLTPAI 218
Query: 301 ---KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVID 341
E A I A R+ E +++ +A+ V+ A +D
Sbjct: 219 LGKAGERMARIDAF-AARAADEFAEAHMTRDALGVLRIARAALD 261
>gi|389571451|ref|ZP_10161546.1| tRNA(Ile)-lysidine synthase [Bacillus sp. M 2-6]
gi|388428851|gb|EIL86641.1| tRNA(Ile)-lysidine synthase [Bacillus sp. M 2-6]
Length = 467
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 181/429 (42%), Gaps = 76/429 (17%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDSM L + G F L+A VDH R EES + V
Sbjct: 20 VIVGVSGGPDSMLLLHELNKRRKGSFQ-----------LIAAHVDHMFRGEESFADLAFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ I E R + K+ L Q AAR+ RY F+++ Q+ + +AHH
Sbjct: 69 EAYCKEHEILFESARIQ-VTQYAKENRLNKQAAARECRYAFFRQLMEQYSAQFIALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL+R + +GLAGM + L+RPL+ +SKDD+
Sbjct: 128 DDQVETMVMRLTRGTVGIGLAGMQAKRPFQEGW--------------LIRPLIGYSKDDV 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYV 318
C+ +V D +N + ++RNRIR + + + Q V Y+
Sbjct: 174 LAACEKEQVPYVIDQSNHTDDYLRNRIRRHVLPVLKEEAPHVHESFQFVSDMLTEDEQYL 233
Query: 319 EHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTS 378
+ + + +++ +T +Q I+++ + + + L+L ++ + + +
Sbjct: 234 QALTKDQMHQVIT--NQTPKQIEIKTKPLLDLPLPLQRRGIQLILNYLYENTQSAFSNQ- 290
Query: 379 KLLLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSKLELFQIHSDGEQR 438
H + T +L T G S+D LP L+ + +
Sbjct: 291 ----HILGTLD----------WLSHTDQPSG-------SLD--LPKGLQAVKSYD----- 322
Query: 439 HCVTDVEQILEDAKSYSNHLIQDASDKLLLS-----MISDSVPTEAKRFNMLSESTYKNI 493
HC+ E+ L +SY++HL + ++L L ++S+ VP +A+ N
Sbjct: 323 HCMFTFERSLVIDQSYTHHLKGELGEELFLPNGQSILVSNHVPKDARNGNYF-------- 374
Query: 494 LLLQREEIK 502
LLQ++ ++
Sbjct: 375 FLLQKDHVR 383
>gi|383485756|ref|YP_005394668.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|386321560|ref|YP_006017722.1| ATPase of the PP-loop superfamily implicated in cell cycle control
[Riemerella anatipestifer RA-GD]
gi|416109813|ref|ZP_11591693.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer RA-YM]
gi|442314351|ref|YP_007355654.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Riemerella anatipestifer RA-CH-2]
gi|315023607|gb|EFT36611.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer RA-YM]
gi|325336103|gb|ADZ12377.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Riemerella anatipestifer RA-GD]
gi|380460441|gb|AFD56125.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|441483274|gb|AGC39960.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Riemerella anatipestifer RA-CH-2]
Length = 427
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEEA 140
H+ L VSGG DSM L L ID + I +++ LR E+S ++A
Sbjct: 21 HQFLLAVSGGADSMVLAHLMKQ---------------IDAKIEIAHINYKLRSEDSDKDA 65
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V I D +P G +Q AR++RY+ F+ + + L+ AHH
Sbjct: 66 ALVQEFCEKHHILFHCYTVSEKDQKP-SGSIQLWARELRYQFFRNIMKNRSLSHLVTAHH 124
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+DQ E FI+ LSR SG+ GLAG+ N+ ++RPLLDFSK++
Sbjct: 125 LNDQLETFIINLSRGSGIKGLAGIP------------------NNENEILRPLLDFSKEE 166
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+Y + + + ED +N+ ++RN+IR S+
Sbjct: 167 IYHFAEAHSIAFREDKSNQKQDYLRNKIRHSV 198
>gi|347760556|ref|YP_004868117.1| Ile-tRNA lysidine synthase [Gluconacetobacter xylinus NBRC 3288]
gi|347579526|dbj|BAK83747.1| Ile-tRNA lysidine synthase [Gluconacetobacter xylinus NBRC 3288]
Length = 429
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 113/237 (47%), Gaps = 38/237 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DSMAL VL W+ ++ + VDHGLR ES+ EA
Sbjct: 34 VAVAVSGGADSMALAVLARQWRPD--------------VVGLVVDHGLRAESRREAEQTI 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL--LIAHHAD 202
R+S +G+ ++ L G + + E AR MRY C +IG L L+AHHA
Sbjct: 80 SRLSALGMSAHLLV---LAGLERGTRMAERARRMRYAALFAAC--REIGALDLLVAHHAG 134
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++R SG GLAGMA ++ + + +VRPLL F+K +Y
Sbjct: 135 DQAETVMMRRRAASGDDGLAGMALATPML--------------DVRIVRPLLPFTKPALY 180
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL---GDLSSCSFKSELQAVISACRRTRS 316
+ WVEDP+N R R R +L G+L + L+A + R R+
Sbjct: 181 ATVRAAGVAWVEDPSNADLRTERARARQALAQDGELDAALKTQALRAGQARMARDRA 237
>gi|336383993|gb|EGO25141.1| hypothetical protein SERLADRAFT_436903 [Serpula lacrymans var.
lacrymans S7.9]
Length = 580
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 130/281 (46%), Gaps = 12/281 (4%)
Query: 65 KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL 124
++ + F++ +G P +IA+G SGGPDS L L + ++ + ++
Sbjct: 16 EFWQMFTKCSPPSGWNPKLQIAVGNSGGPDSTCLLFLINR-LLNERKSSRDSAKLPPSVV 74
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PKQ-GHLQEAARDMRYR 181
++TVDHGL+E S A ++ + +G++ + W PK +E ARD R+
Sbjct: 75 SLTVDHGLQEASATMAAHSANTAASLGVKHHSLPIPWSTSPFPPKPLAAFEETARDARFH 134
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM----AFSSQIFSSYAYS 237
+ + + VL HHADDQ E ++RL+R + +G AGM + I +
Sbjct: 135 VLFQAMTRTGANVLAFGHHADDQVETSLMRLARGTTEVGAAGMRRCRRWGMGIGAEEGEL 194
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDLS 296
L+ + +VRPLL+ KD + C ++V D TN P + +RN IR L +
Sbjct: 195 GWAGLEGMNRWIVRPLLEVRKDRILATCHEHGLEYVTDQTNFQPEITLRNAIRRMLAEEE 254
Query: 297 SCSFKSEL---QAVISACRRTRSYVEHVCSNLINEAVTVMD 334
+ ++L QA + ++ V S N T++D
Sbjct: 255 ATGKDTKLELDQAPQEMPPEFKEALQKVKSASANFQTTILD 295
>gi|384920063|ref|ZP_10020082.1| tRNA(Ile)-lysidine synthetase-like protein [Citreicella sp. 357]
gi|384466083|gb|EIE50609.1| tRNA(Ile)-lysidine synthetase-like protein [Citreicella sp. 357]
Length = 422
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 146/346 (42%), Gaps = 41/346 (11%)
Query: 63 MTKYREAFSRRMAMAGLKPH--HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI 120
MT + F+ M A L P IAL VSGG DSMA+ L W +
Sbjct: 1 MTSLDQRFADAMG-AALGPDFPRDIALAVSGGGDSMAMLTLAHNWSH----------RWG 49
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
L +TVDHGLR ES E ++V +++G + W QG+L +AAR R
Sbjct: 50 VSLHVVTVDHGLRPESPAEVDLVKATCAELGHPHTDLSWRW----NGQGNLMDAARRGRL 105
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
+ +++ LL AH DD AE F++RL+R SGV GLA MA ++ D
Sbjct: 106 AVIGDWLARNR--PLLQAHTRDDVAETFLMRLARGSGVDGLAAMAAVREV-------ARD 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF 300
D +I VRP L ++++ + W EDP+N + R RIR L L +
Sbjct: 157 DGTQFTI--VRPCLGMGREELRHYLRTLKGTWAEDPSNADDSYERARIRKLLPTLKAHGL 214
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ-----GYAVIDLEILNPSKIEDIFL 355
E +SA R S EA G +D + ++IE
Sbjct: 215 DPE---TLSATARRMSRAGEALRLRAAEAWDACGSEECALGTLTLDRDAF--ARIERDTQ 269
Query: 356 SKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYL 401
+ LA L+F+ + + R + + LL + S T GC L
Sbjct: 270 LRVLAAALRFVSRAEYRPRAAALETLLDRLH---AGGSGTLHGCEL 312
>gi|313206452|ref|YP_004045629.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|312445768|gb|ADQ82123.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer ATCC 11845
= DSM 15868]
Length = 424
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEEA 140
H+ L VSGG DSM L L ID + I +++ LR E+S ++A
Sbjct: 18 HQFLLAVSGGADSMVLAHLMKQ---------------IDAKIEIAHINYKLRSEDSDKDA 62
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V I D +P G +Q AR++RY+ F+ + + L+ AHH
Sbjct: 63 ALVQEFCEKHHILFHCYTVSEKDQKP-SGSIQLWARELRYQFFRNIMKNRSLSHLVTAHH 121
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+DQ E FI+ LSR SG+ GLAG+ N+ ++RPLLDFSK++
Sbjct: 122 LNDQLETFIINLSRGSGIKGLAGIP------------------NNENEILRPLLDFSKEE 163
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+Y + + + ED +N+ ++RN+IR S+
Sbjct: 164 IYHFAEAHSIAFREDKSNQKQDYLRNKIRHSV 195
>gi|423613690|ref|ZP_17589550.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD107]
gi|401241379|gb|EJR47770.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD107]
Length = 476
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 105/213 (49%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKEHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVRNLCKELGIICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 207
>gi|428173783|gb|EKX42683.1| hypothetical protein GUITHDRAFT_164075 [Guillardia theta CCMP2712]
Length = 578
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 108/221 (48%), Gaps = 35/221 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV---DHGLREESKEEAN 141
+ +GVSGG DS AL +L Q E GE +G L+I V DHGLR ESKEEA
Sbjct: 90 LVVGVSGGSDSTALMLLL-----DEVRQEHEGGE--EGQLSINVVHFDHGLRAESKEEAK 142
Query: 142 IVSHRVSDMGIRCEIVRCDWLDG---RPKQGHLQEAARDMRYRLFQKVC--IQHQ----I 192
V D G+ + D D R G +QE R R ++ +V I+ Q
Sbjct: 143 FVEGLARDRGMPFYMQALDEADAARFRENSGGMQEYTRIWRRKVMGEVAAKIKEQSRPDT 202
Query: 193 GVLLI-AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVR 251
V L+ AHH+DDQ E +++L R + + L GM + DDL ++R
Sbjct: 203 KVYLVSAHHSDDQLETILMKLLRGAHISKLHGMKYK------------DDLDPP---MLR 247
Query: 252 PLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
PLLD SK ++ + + +DW ED +N + RN++R+ L
Sbjct: 248 PLLDISKQELVRYLKDLQQDWREDSSNHESTYKRNKVRIQL 288
>gi|423416543|ref|ZP_17393632.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3X2-1]
gi|401110197|gb|EJQ18108.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3X2-1]
Length = 476
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + E G++ VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLGIVVAHVDHMFRGNESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY + + ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 207
>gi|229083382|ref|ZP_04215732.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
gi|228699918|gb|EEL52553.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
Length = 480
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 151/345 (43%), Gaps = 36/345 (10%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
+ F++R + L+ H I +GVSGGPDS+AL + EA I +
Sbjct: 14 DEFAKRHDV--LEEHSTIVVGVSGGPDSLALLYYL-------LEKRKEAKLKI---VVAH 61
Query: 128 VDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQK 185
VDH R +ES E+ V + ++G+ CE +R + + + G + Q AAR+ RY ++
Sbjct: 62 VDHMFRGDESYEDLQFVENLCREIGVICETIRINVSQYQQQYGMNAQMAARECRYAFLER 121
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+ +++ + + HH DDQ E ++RL R S G AG+A S Y
Sbjct: 122 IMKKYEASYVALGHHGDDQVETILMRLVRGSTSKGYAGIAAKRPFHSGY----------- 170
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKS 302
L+RPLL +K ++ C+ DP+N ++ RNR+R + +
Sbjct: 171 ---LIRPLLAVTKKEINAYCKRIGITPRIDPSNEKEVYTRNRLRKHVLPYLKEENPHVHE 227
Query: 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALV 362
+ Q + +Y++ + +N+ +T V+ + + + + L+
Sbjct: 228 QFQKFSVLMQEDEAYLQELAFEKMNKVITKKSNKNIVLSIPAFESMSMP--LQRRGIQLI 285
Query: 363 LQFICQRQRPVRGST---SKLLLHYIRTFPCKTSLTAAGCYLCPT 404
L ++ + + P S+ K++ + RT P + AG + T
Sbjct: 286 LNYLYEYKIPSSLSSIHIDKVIAFFKRTHPSGSLDFPAGLKIVRT 330
>gi|407939982|ref|YP_006855623.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. KKS102]
gi|407897776|gb|AFU46985.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. KKS102]
Length = 316
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 105/234 (44%), Gaps = 35/234 (14%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
+A+ P +A+ +SGG DS AL + A + +LAI V HGL+
Sbjct: 7 VALQAFAPALPLAVALSGGADSTALLLACAR-------------RWPGQVLAIHVHHGLQ 53
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQ-HQ 191
+ H V+ G +R LD RP G E AAR RY+ V ++ H
Sbjct: 54 AAAD---GFEQHCVALCGQLGVPLRVQRLDARPAPGQSPEDAARQARYQALTAVALEDHV 110
Query: 192 IGVL---LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+G + IA HADDQ E +L LSR +GV GLA M + ++
Sbjct: 111 LGAIQSIAIAQHADDQVETLLLALSRGAGVAGLAAMPA--------------QWERGGLV 156
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
RPLL + D+ + + + WVEDPTNR + RNRIR L + +F S
Sbjct: 157 WHRPLLQVAASDVRQWLKAQGQAWVEDPTNRDERYTRNRIRAQLLPILESAFPS 210
>gi|134094514|ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas arsenicoxydans]
gi|133738417|emb|CAL61462.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine
synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS
[Herminiimonas arsenicoxydans]
Length = 465
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 20/206 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ SGG DS AL L + T Q+G L A V HGL + +
Sbjct: 33 KIAIAYSGGLDSAALLYLLRAYAT----QHGLE------LFAFHVHHGLSLNADQWLAHC 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + +G+ + R + + K G ++EAAR RY ++C H + +LL AHH DD
Sbjct: 83 QQQCAGLGVAFDARRVQ-IANQDKSG-VEEAARHSRYAALGEMCRAHDVPLLLTAHHQDD 140
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE +L+L R SGV GL+GM S ++ D L + ++L+ RPLL ++ D+ K
Sbjct: 141 QAETVLLQLLRGSGVAGLSGM-------DSVNHAA-DLLGDATLLMGRPLLQLARADLEK 192
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR 289
I +VED +N P + RN +R
Sbjct: 193 IVTSNAIAFVEDESNLDPRYARNALR 218
>gi|222149666|ref|YP_002550623.1| hypothetical protein Avi_3626 [Agrobacterium vitis S4]
gi|221736648|gb|ACM37611.1| Conserved hypothetical protein [Agrobacterium vitis S4]
Length = 454
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 85/172 (49%), Gaps = 18/172 (10%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A T+DHGLR+ S EA V+ + +GI EI R W +PK G + AAR RY+L
Sbjct: 78 LHAATIDHGLRDGSAAEAETVAALCATLGIPHEIRR--WTGDKPKTG-ISAAARAARYQL 134
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILR--LSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240
++ + +L H ADDQ E +R SRN GLAGMA S
Sbjct: 135 LAEIAKEIDAAAILTGHTADDQIETIAMREKRSRNPRATGLAGMAESV------------ 182
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L +SI + RPLL + + Q WV+DP+N +P + R RIR L
Sbjct: 183 -LFENSIWITRPLLRSRRQAIRVFLQDRGHGWVDDPSNDNPAYERARIRAHL 233
>gi|386712424|ref|YP_006178746.1| tRNA(Ile)-lysidine synthetase [Halobacillus halophilus DSM 2266]
gi|384071979|emb|CCG43469.1| tRNA(Ile)-lysidine synthetase [Halobacillus halophilus DSM 2266]
Length = 464
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 43/261 (16%)
Query: 79 LKPHHRIALGVSGGPDSMAL----CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR- 133
+ PH + VSGGPDSMAL C + W ++ I+VDHGLR
Sbjct: 15 ISPHQTVLAAVSGGPDSMALLHFLCSIKNSWNLK--------------IIGISVDHGLRG 60
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQI 192
+ES ++ V ++ + GI D R + G QE+AR +RY+ F+++ + +
Sbjct: 61 QESMDDLEFVKNQCEEWGIEFAGTSVDVHSHRSESGTGTQESARYLRYQYFERMMEERKA 120
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
VL + HH DDQAE +++L R++ L GM LVRP
Sbjct: 121 DVLAMGHHGDDQAETMMMQLVRSARPESLQGMPIQRPFGRGQ--------------LVRP 166
Query: 253 LLDFSKDDMYKICQGGNRDWVE---DPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQA 306
L SK +I + R V DP+N + RN R M + F S +QA
Sbjct: 167 FLSLSKS---QIAEYNARHQVRARIDPSNEETNYTRNAFRKHVMPFLKEQNPKFHSHMQA 223
Query: 307 VISACRRTRSYVEHVCSNLIN 327
+ R +SY+ +++
Sbjct: 224 MSQRMREDQSYIREQAREVLD 244
>gi|126733590|ref|ZP_01749337.1| Probable cell cycle protein [Roseobacter sp. CCS2]
gi|126716456|gb|EBA13320.1| Probable cell cycle protein [Roseobacter sp. CCS2]
Length = 424
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 139/337 (41%), Gaps = 37/337 (10%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129
F +A + I L VSGG DS+AL L A + L +TVD
Sbjct: 14 FQNAIAASPTASEETIGLSVSGGGDSIALMHLAARLRDP------------KRLRVLTVD 61
Query: 130 HGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ 189
HGLR E+++E +V+ + +D+ I ++ W DG QG+LQ AAR R+
Sbjct: 62 HGLRPEAQQEIALVASQAADLNIDHAVMPWTW-DG---QGNLQAAARARRWAAVSAWAAM 117
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
H + + + H DDQ E ++RL+R SG+ GL M Y S DDL+ +
Sbjct: 118 HNMREVWLGHTEDDQVETVLMRLARGSGIDGLTAM---------YPLSERDDLR-----I 163
Query: 250 VRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVI 308
+RPLL ++ D+ Q W EDP+N P F R R R L + L I
Sbjct: 164 LRPLLGCARADLRHWLQSNKIPWCEDPSNDDPRFDRVRARQMFAQLEGLGLTRKRLLQTI 223
Query: 309 SACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQ 368
+ ++ + V D G + D L+ K + + + F
Sbjct: 224 DHMQAAHLSLQIAAHGFARQHVR-QDAGDLLCDPPALDLQKAD----APRRVMAAAFAWV 278
Query: 369 RQRPVRGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTP 405
R R +LL R T +T AGC + P P
Sbjct: 279 GSRTYRPRFEQLLDTVARARKGMT-VTLAGCIMTPEP 314
>gi|354593770|ref|ZP_09011813.1| hypothetical protein CIN_05090 [Commensalibacter intestini A911]
gi|353672881|gb|EHD14577.1| hypothetical protein CIN_05090 [Commensalibacter intestini A911]
Length = 424
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 120/267 (44%), Gaps = 40/267 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DS+ L +L + W+ ++A VDH LR S++EA I
Sbjct: 34 VAIAVSGGADSLCLALLASRWRKN--------------IIAFIVDHQLRNSSRQEAMITQ 79
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+S + I EI+ L+ P L+E AR RY C LL+ HHA DQ
Sbjct: 80 ERLSSLFIPSEILTLTDLEVGPA---LEERARIARYTALVHACYARGCIDLLLGHHAGDQ 136
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++R+ S GL+GMA DL +I LVRPLL +
Sbjct: 137 AETILMRIRAGSASDGLSGMA------------AIMDLP--TIRLVRPLLHVYPQRLRAT 182
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR-----TRSYVE 319
+ WVEDP+N+ RNR+R L S S+K+ + R R +
Sbjct: 183 LREEKLVWVEDPSNQDMRIQRNRLREEL----SSSWKTSGTVAVLLKRSQEEGLARMKRD 238
Query: 320 HVCSNLINEAVTVMDQGYAVIDLEILN 346
++++ + V V +G+A++ ++
Sbjct: 239 QEQADILAKDVVVRPEGFALLSSNVIE 265
>gi|327297324|ref|XP_003233356.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892]
gi|326464662|gb|EGD90115.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892]
Length = 806
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 157/381 (41%), Gaps = 67/381 (17%)
Query: 25 LSLSSVKCRIPFTRSQYLPSIRLFC--KCSHAHAVEYLTDMTK------YREAFSRRMAM 76
L L +V P RS+ L + R+ K + A E + + + YR A
Sbjct: 6 LGLWAVTFAYPDRRSERLNNFRVVTENKPTEDKAKETFSTLWEISPQEFYRALTGLWTAW 65
Query: 77 AGLK--PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
G K RI L VSGG DSMAL L + T E +I VDH R
Sbjct: 66 QGGKYVSLQRIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVTAYI-------VDHKYRP 118
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PKQGHLQEAARDMRYRLFQKVCIQHQI 192
ES +EA V+ RV ++G++ +++ W +G K+G + AR +RY++ K C++ +
Sbjct: 119 ESSQEAQSVAKRVENLGVQSKVLTLQWPEGGILTKKG-FETQARMLRYQILGKACVKDGV 177
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI----------FSSYAYSCHDDL 242
LL+ HH DD E ++R+S+ LGL G + I S S D L
Sbjct: 178 RALLLGHHQDDNVETALMRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLVTSLQDIL 237
Query: 243 KNHS------------------------------ILLVRPLLDFSKDDMYKICQGGNRDW 272
K+ + I L RP FSK + CQ +
Sbjct: 238 KSTNMDGTISHPSFRMPSRTINFAPGQMQVSTGGIYLFRPFRSFSKSRLVATCQEHKIPF 297
Query: 273 VEDPTNRSPLF-VRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH---VCSNLINE 328
V D TN F +RN +R L + + +++S ++R E +C +++ +
Sbjct: 298 VLDSTNEDRTFTIRNTVRQLLNSENLLPRALQRPSILSLVDKSREQTEKFRDLCESILKK 357
Query: 329 A-VTVMDQ--GYAVIDLEILN 346
+ +D G V+ + I++
Sbjct: 358 VEILSLDTRFGTMVVKMPIIS 378
>gi|114327773|ref|YP_744930.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis
CGDNIH1]
gi|114315947|gb|ABI62007.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis
CGDNIH1]
Length = 433
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 122/278 (43%), Gaps = 29/278 (10%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
AF+ MA R+A+ VSGG DS+AL +L A W Q G +LA+ V
Sbjct: 25 AFAEAMARIVPPVSQRVAVAVSGGSDSLALALLAARW------QRSRGGS----VLALVV 74
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
DHGLR ES EA + R+ I ++R L + + AR RY C
Sbjct: 75 DHGLRPESAFEAQLTLERLKTQKIEARLLRLTTLQ---RGSAIASRARAARYDALIGACR 131
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
I LL+ HH DQAE +R S V+GLAGMA + I
Sbjct: 132 NEGIIDLLLGHHRQDQAETIWIRQQAGSAVMGLAGMALLREAA--------------DIR 177
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 308
L+RPLL F+K + + + DWVEDP+N SP R + R + + +L +
Sbjct: 178 LLRPLLAFNKASLRNVVRDYGLDWVEDPSNHSPAAGRTQAREVVE--RDGPQQDQLLEMA 235
Query: 309 SACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN 346
TR E + + V+ + +GYA++ L+
Sbjct: 236 HHAAMTRRVQEQTIAQELAATVSFLPEGYALVSGNTLS 273
>gi|52145153|ref|YP_081675.1| cell cycle protein [Bacillus cereus E33L]
gi|61216463|sp|Q63HD6.1|TILS_BACCZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|51978622|gb|AAU20172.1| cell cycle protein [Bacillus cereus E33L]
Length = 476
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKEHSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|170750723|ref|YP_001756983.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM
2831]
gi|170657245|gb|ACB26300.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM
2831]
Length = 345
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 89/205 (43%), Gaps = 26/205 (12%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDS AL A + + G + L TVDHGLR ES EA V
Sbjct: 3 LAVSGGPDSSALMHAAARLR----DATGAS------LRVATVDHGLRSESGAEAEAVGRA 52
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+G+ I+ W +P G LQ+AAR RY L G++L H DDQAE
Sbjct: 53 ARALGLPHAIL--TWAGAKPGTG-LQDAARRARYALLAAHAEAVGAGLVLTGHTRDDQAE 109
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
++RL+ SG GLAGM DL + L RP L K + C
Sbjct: 110 TVLIRLAAGSGPAGLAGM------------RAERDL-GPGLALGRPFLHLPKASLVAWCA 156
Query: 267 GGNRDWVEDPTNRSPLFVRNRIRMS 291
+ DP N P F R R+R +
Sbjct: 157 ARGIAYARDPANGDPRFARGRLRAA 181
>gi|312144293|ref|YP_003995739.1| tRNA(Ile)-lysidine synthetase [Halanaerobium hydrogeniformans]
gi|311904944|gb|ADQ15385.1| tRNA(Ile)-lysidine synthetase [Halanaerobium hydrogeniformans]
Length = 472
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 39/211 (18%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I L VSGGPDS+ + L +K F + I +DH R+ES +E + V
Sbjct: 22 KILLAVSGGPDSLTMLQLFFEFKDY----------FAVDIALIHLDHQFRKESGQELDFV 71
Query: 144 SHRVSDMGIRC--------EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+ D+ I EI++ + + + AAR R+ F+++ +++ +L
Sbjct: 72 EEKAKDLNINFYTKKVNLPEIIKNENISA-------EAAARRERFNFFKEIYLKNDFDLL 124
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+AHH DDQAE +L L R SG+ GL+G+ I + + ++ PLLD
Sbjct: 125 ALAHHKDDQAETVLLNLFRGSGLRGLSGIEKKINI--------------NGVQVIHPLLD 170
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRN 286
FSK ++ K CQ + D +N+ ++ RN
Sbjct: 171 FSKKEIIKYCQEKKLNPRYDSSNKENIYSRN 201
>gi|229027910|ref|ZP_04184065.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271]
gi|228733424|gb|EEL84251.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271]
Length = 480
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKEHSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 211
>gi|350264166|ref|YP_004875473.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597053|gb|AEP84841.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 472
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 117/252 (46%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------IIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+ + ++HQ L +AHH D
Sbjct: 69 QAYCKAEQLACETAQINVTAYSQEKGLNKQAAARDCRYQFFEDIMLKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++RL++ + GLAGM + + ++RP L +K++++
Sbjct: 129 DQVETMLMRLAKGTLGAGLAGMQPVRRFGTGR--------------IIRPFLTITKEEIH 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ + + D +N + RNR R ++ S Q V A +++
Sbjct: 175 HYCRENSLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQ 234
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 235 SLTKDEMNKVIT 246
>gi|448119675|ref|XP_004203791.1| Piso0_000811 [Millerozyma farinosa CBS 7064]
gi|359384659|emb|CCE78194.1| Piso0_000811 [Millerozyma farinosa CBS 7064]
Length = 490
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 13/194 (6%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DSM L L + W A ++ GL AIT+DH R+ES EA ++
Sbjct: 24 LCIALSGGVDSMCLTYLLSRW----------AKKYSVGLKAITIDHSYRKESANEAALIG 73
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
V G++ + + ++ + +E AR RY +F +VC + +AH DDQ
Sbjct: 74 RCVEKWGVQHVVHKIEYGADIESITNFEEVARTRRYEIFDRVCRGSNASHICLAHTLDDQ 133
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E F+ RL NS + GLAG+ + I + +++ + ++RPLL F K ++
Sbjct: 134 LETFMQRLRHNSSLFGLAGLKDVATI--PLPATAPARVRS-PVRVIRPLLGFWKTELVAT 190
Query: 265 CQGGNRDWVEDPTN 278
C+ W ED TN
Sbjct: 191 CKESGVGWFEDYTN 204
>gi|83943921|ref|ZP_00956378.1| Probable cell cycle protein [Sulfitobacter sp. EE-36]
gi|83845168|gb|EAP83048.1| Probable cell cycle protein [Sulfitobacter sp. EE-36]
Length = 419
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 105/229 (45%), Gaps = 27/229 (11%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + + VSGG DS+AL L N A L A TVDHGLR E+ EA
Sbjct: 17 PPPVLGVAVSGGGDSVALLHLL----------NDYARSRGIALRAATVDHGLRPEAAREA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V+ + +G+ + +R W G G+LQ AR RYRL IG + I H
Sbjct: 67 AMVAAQCRALGVPHDTLR--WT-GWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHT 123
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
ADD AE F++RL R +GV GL+ M IF + H RPLL+ + D
Sbjct: 124 ADDLAETFVMRLGRRAGVDGLSAM---PAIFDRHGMRWH-----------RPLLNVRRAD 169
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
+ WV+DP+N F R RIR +L L+ S A +S
Sbjct: 170 LRAHLTRCGVTWVDDPSNEDDSFARVRIRKALAVLTDLGVDSAALADVS 218
>gi|229159237|ref|ZP_04287262.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803]
gi|228624252|gb|EEK81053.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803]
Length = 480
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 35/235 (14%)
Query: 57 VEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEA 116
VE + D K + R I +GVSGGPDS+AL + EA
Sbjct: 10 VEKVDDFVKQHDVLEERST---------IVVGVSGGPDSLALLYYLL--------EKKEA 52
Query: 117 GEFIDGLLAITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEA 174
+ ++ VDH R +ES E+ V ++G+ CE +R + + + G + Q A
Sbjct: 53 KRW--EIVVAHVDHMFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVA 110
Query: 175 ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
AR+ RY +++ ++ + + HH DDQ E ++RL R S G AG+A + Y
Sbjct: 111 ARECRYAFLERIMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY 170
Query: 235 AYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL +K+++ C N DP+N+ ++ RNR+R
Sbjct: 171 --------------LIRPLLGVTKEEIINYCNKLNVIPRIDPSNKKEVYTRNRLR 211
>gi|213404712|ref|XP_002173128.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces
japonicus yFS275]
gi|212001175|gb|EEB06835.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces
japonicus yFS275]
Length = 462
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 139/321 (43%), Gaps = 33/321 (10%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
+ VSGG DSM L L + + + A V+HGLR+ES E+A I
Sbjct: 25 GVAVSGGVDSMCLVHL--------LRETMLQYLWPKRIHAFIVEHGLRKESAEDAVITRR 76
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
R+ DMGI I+ + KQ ++ AR +RYR K C++H+I L AHH +DQ
Sbjct: 77 RLLDMGIPSTILPLNHKWDLSKQSKIETIARVLRYRTLAKACLRHKIYGLFTAHHLNDQY 136
Query: 206 ELFILR-LSRNSGVL-GLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E ++R L R G GL G+ + + S D ILL+RP L + K + K
Sbjct: 137 ETIVMRLLQRKPGTWGGLCGIRKVAPLPES-----EDIYGADQILLLRPFLSYPKTCIKK 191
Query: 264 ICQGGNRDWVEDPTNRS-PLFVRNRIRM----SLGDLSSCSFKSELQAVISACRRTRSYV 318
Q W ED +N+ L VRN IR +L S Q + +++ +
Sbjct: 192 KVQ-----WCEDKSNKDIQLTVRNAIRAVGVDTLVSTEIASISQTFQELEDHSQKSVHSL 246
Query: 319 EHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTS 378
CS L +A+ I I++ S D ++FL ++ I + + R S
Sbjct: 247 LKQCSCLYFKAIHSFQMQIPCI---IMDTS--SDFIKTEFLMYLIDIITPKTKKKRRSIE 301
Query: 379 KLLLHYIRTFPCKTSLTAAGC 399
+ R + LTA GC
Sbjct: 302 GI---SKRLWNSTKPLTAGGC 319
>gi|328542547|ref|YP_004302656.1| ATPase [Polymorphum gilvum SL003B-26A1]
gi|326412293|gb|ADZ69356.1| Predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Polymorphum gilvum SL003B-26A1]
Length = 442
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ VSGG DS+AL L A W+ + A + TVDHGLR E++ EA V
Sbjct: 30 RLAIAVSGGADSLALLHLFADWQ----RRTARAPQ----AHVFTVDHGLRAEARAEAEHV 81
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + EI+ W GR +LQ AR+ RY L + L +AHH DD
Sbjct: 82 HRLCAGYCLPHEIL--TWA-GRKGAPNLQATAREARYTLIGARMRALSLSALAVAHHRDD 138
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE F+ RL+R SGV GLA MA + ++RPLLD K +
Sbjct: 139 QAETFLDRLTRGSGVYGLAAMAADEADGPV------------GVRILRPLLDVPKARLIA 186
Query: 264 ICQGGNRDWVEDPTN 278
+ W EDP+N
Sbjct: 187 TLEAAGLSWFEDPSN 201
>gi|119383441|ref|YP_914497.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222]
gi|119373208|gb|ABL68801.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222]
Length = 409
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 101/215 (46%), Gaps = 33/215 (15%)
Query: 83 HRIALGV--SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
HR LG+ SGG DS AL L GW G A LLA TVDHGLR S +EA
Sbjct: 20 HRPTLGIALSGGGDSTALMHLAHGW--------GRAR-----LLAATVDHGLRPGSADEA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ + I E +R R G+L AAR+ R +L +H + +L+ H
Sbjct: 67 RQAGLAAAALDIPHETLRWT----RRGGGNLMAAAREARLQLLAGWAGRHGLSAVLLGHT 122
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DDQAE ++RL+R +GV GL+ MA + F + +RP+L+ + D
Sbjct: 123 LDDQAETLLMRLNRGAGVDGLSAMAPMREAF--------------GVTWLRPMLEIGRAD 168
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
+ W +DP+N + F R R+R ++ L
Sbjct: 169 LRHWLAARGLGWADDPSNENEDFERVRVRKAIAAL 203
>gi|443635041|ref|ZP_21119211.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443345094|gb|ELS59161.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 472
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 35/275 (12%)
Query: 63 MTKYREAFSRR-MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M ++ FS+ +A+ G I +GVSGGPDSMAL L A G + N
Sbjct: 1 MKSVKDFFSKHHLALKGAT----IIVGVSGGPDSMAL--LHALHTLCGRSAN-------- 46
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMR 179
++A VDH R ES+E+ V + CE + + ++G + Q AARD R
Sbjct: 47 -IIAAHVDHRFRGTESEEDMRFVQAYCKAEQLACETAQINVTAYAEEKGLNKQAAARDCR 105
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y+ F+++ ++HQ L +AHH DDQ E ++RL++ + GLAGM + +
Sbjct: 106 YQFFEEIMLKHQADYLALAHHGDDQVETMLMRLAKGTLGAGLAGMQPVRRFGTGR----- 160
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---S 296
++RP L +K+++ C+ + D +N + RNR R ++
Sbjct: 161 ---------IIRPFLTITKEEILHYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQE 211
Query: 297 SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 331
S Q V A +++ + + +N+ +T
Sbjct: 212 SPDVHKRFQKVSEALTEDEQFLQSLTKDEMNKVIT 246
>gi|262277487|ref|ZP_06055280.1| cell cycle protein mesj [alpha proteobacterium HIMB114]
gi|262224590|gb|EEY75049.1| cell cycle protein mesj [alpha proteobacterium HIMB114]
Length = 333
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+ +GVSGGPDSMAL L+ + N+ E + +DHG+R+ S +EA V
Sbjct: 34 KFVIGVSGGPDSMALAYLSKVYSIDR-NKTFEC---------VIIDHGVRKNSGKEAKKV 83
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I+ I + + + + AR RY + C + ++ +L+ HH DD
Sbjct: 84 KSALLKHKIKSNIFKIKFENS----SNFHSEARVKRYDKIIEFCKRKKVKKILLGHHLDD 139
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E F +RLSR SG+ GL+ + S K +I +RP L+ K+++ K
Sbjct: 140 QVENFYIRLSRGSGLTGLSPIKKVS--------------KYKNIYFLRPFLNTKKNELVK 185
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR 289
I + V DP+N ++R+R+R
Sbjct: 186 IAKKNFSFSVNDPSNFKDKYLRSRVR 211
>gi|402820450|ref|ZP_10870017.1| hypothetical protein IMCC14465_12510 [alpha proteobacterium
IMCC14465]
gi|402511193|gb|EJW21455.1| hypothetical protein IMCC14465_12510 [alpha proteobacterium
IMCC14465]
Length = 439
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK 185
+TV+HGLR + +E V+ G+ +I+ G +Q AARD+RY L
Sbjct: 63 LTVNHGLRAAAVKETRHVAKLAKAAGLASQILTYK---GTIPDKDIQAAARDIRYGLMSD 119
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
C++H+ L+ AHH +DQAE F+LRL+R SG+ GL+ M +
Sbjct: 120 WCVKHKADYLVTAHHLEDQAETFLLRLARGSGLDGLSAMQSVGN--------------RN 165
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS-EL 304
+ L+RP LD + ++K + + DP+N + F R R+R + L+ + L
Sbjct: 166 GVTLLRPFLDVPRARLHKTVAKAGLEAISDPSNMNRRFARVRMREKMDLLAEEGLTAPRL 225
Query: 305 QAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL--NPSKIEDIFLSKFL 359
+ R +EHV ++ AV V D A +D L P +I L++ L
Sbjct: 226 AETAGRLLQARKALEHVADTVMQSAVRVDDYDIAHLDHAALRDQPEEILRRILNRIL 282
>gi|91978603|ref|YP_571262.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodopseudomonas
palustris BisB5]
gi|91685059|gb|ABE41361.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
BisB5]
Length = 347
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 92/205 (44%), Gaps = 25/205 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGGPDS+AL L A W+ + G A L +TVDHGLR E+ EA V
Sbjct: 27 IVLAVSGGPDSLALLWLAARWRKA--LKRGPA------LGVVTVDHGLRPEAAREARAVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + +R W +P G A L K + ++ AH DDQ
Sbjct: 79 QLARTLDLPHRTLR--WTGEKPTTGLPAAARAARYR-LLAKAAKRFGATHIMTAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RLSR SG+ GLA MA ++ +LVRPLLD SK +
Sbjct: 136 AETVLMRLSRGSGIAGLAAMARETE--------------RDGAVLVRPLLDVSKQRLIAT 181
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
++ DP+N P F R R R
Sbjct: 182 LSKAQIEYTTDPSNLDPRFTRPRWR 206
>gi|452972548|gb|EME72378.1| tRNA(Ile)-lysidine synthase TilS [Bacillus sonorensis L12]
Length = 476
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 118/266 (44%), Gaps = 30/266 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANIV 143
I +GVSGGPDSMAL G + L+A VDH R ES+++ V
Sbjct: 20 IIVGVSGGPDSMALLHALKRMIPGSAS-----------LIAAHVDHMFRGLESEQDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
GI CE ++ + K + Q AAR+ R+R F+ +H L +AHH D
Sbjct: 69 KDFCKAEGILCEALQINVQKYAAEKNLNKQAAARECRFRFFKDQMEKHHATYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + LGLAG+ + + L+RP LD +K+D+
Sbjct: 129 DQIETMLMKLAKGTVGLGLAGIRPVRRFGEGW--------------LIRPFLDLAKEDIL 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYVE 319
+ C+ + + DP+N + RNR R + S Q+V + Y++
Sbjct: 175 QYCKANHVPFRTDPSNNEDDYTRNRFRHHVLPFLKEESEDVHKRFQSVSESLTEDELYLQ 234
Query: 320 HVCSNLINEAVTVMDQGYAVIDLEIL 345
+ + +N +T I++E L
Sbjct: 235 ALTKDKMNTVITNKSSSCIEINVESL 260
>gi|296329569|ref|ZP_06872055.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305672766|ref|YP_003864437.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296153312|gb|EFG94175.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411009|gb|ADM36127.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 472
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 117/252 (46%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------IIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + R K + Q AARD RY+ F+ + ++HQ L +AHH D
Sbjct: 69 QAYCKAEQLACETAQINVTAYAREKGLNKQAAARDCRYQFFEDIMLKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + GLAGM + + + ++RP L +K+++
Sbjct: 129 DQVETMLMKLAKGALGAGLAGMQPARRFGTGR--------------IIRPFLTITKEEIL 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ + + D +N + + RNR R ++ S Q V A +++
Sbjct: 175 HYCRENSLSYRTDESNATDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQ 234
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 235 SLTKDEMNKVIT 246
>gi|50542994|ref|XP_499663.1| YALI0A01760p [Yarrowia lipolytica]
gi|49645528|emb|CAG83586.1| YALI0A01760p [Yarrowia lipolytica CLIB122]
Length = 426
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 106/225 (47%), Gaps = 26/225 (11%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
M + L R+AL VSGG DSMAL + + +T G ++ A TVDHG+R
Sbjct: 1 MPLNTLTKLPRLALAVSGGSDSMALAYMIS--QTPGLSEKTTA---------YTVDHGVR 49
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
ES EA V VS +GI I++ D L+ + + R RY +
Sbjct: 50 SESSSEAQNVHEIVSRLGINHRILKLDALNDTK-----ELSMRQARYSKLIAAMNDDGVS 104
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD-DLKNHSIL---- 248
++ AH DD E F++R+ R SG+ GLAG+ F+ Y + LK HS
Sbjct: 105 TVVTAHTQDDCIETFVVRMLRGSGLFGLAGIQPRVS-FNPYTWGGGGIALKQHSRTELAS 163
Query: 249 ---LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRS-PLFVRNRIR 289
L+RPLL +K + + N W EDPTN++ + RN +R
Sbjct: 164 GWKLMRPLLGLTKSHLRNVLVKNNIPWFEDPTNQNVEIAERNLVR 208
>gi|333922349|ref|YP_004495929.1| tRNA(Ile)-lysidine synthase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333747910|gb|AEF93017.1| tRNA(Ile)-lysidine synthase [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 475
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 33/218 (15%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
++P + +GVSGGPDS+AL + + E L A ++H R EE+K
Sbjct: 17 VQPGDLVVVGVSGGPDSVALLHVLYCLRD----------ELGISLHAAHLNHMFRGEEAK 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
E+A+ V + +GI C + D + ++ HL + AAR+ RYR F+ V L
Sbjct: 67 EDASFVQDLAAKLGIPCTVEERD-VPAYARKNHLSSEVAAREARYRFFRDVLQATGGSKL 125
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+AHHADDQAEL ++ + R +G+ GL+GM Q++ +RP+L
Sbjct: 126 ALAHHADDQAELVLMNILRGTGLKGLSGMWPVRDQVY------------------IRPML 167
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + D+ + C N + D +N +++RNRIR L
Sbjct: 168 EVRRKDIEQYCHDHNLSFRIDSSNLKNIYLRNRIRQQL 205
>gi|229100858|ref|ZP_04231666.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28]
gi|228682558|gb|EEL36627.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28]
Length = 283
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLEIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ K C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVKYCNELNLIPRIDPSNKKEVYTRNRLR 211
>gi|85706708|ref|ZP_01037800.1| PP-loop family protein [Roseovarius sp. 217]
gi|85668766|gb|EAQ23635.1| PP-loop family protein [Roseovarius sp. 217]
Length = 419
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 133/299 (44%), Gaps = 37/299 (12%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P R+ + VSGG DS+AL L W+ G G A L A+TVDHGLR E+ EA
Sbjct: 20 PPPRLGVAVSGGSDSLALLHLLHDWQRAG----GPA------LAAVTVDHGLRPEAGAEA 69
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V+H + + + + G G+L + AR RY L + + I H
Sbjct: 70 AEVAHICARLNVPHHTLHWQGCGG---SGNLPDRARRARYTLMSDWAAAQGLTDIAIGHT 126
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DD AE F++RL+R +GV GLA M ++ + H RPLL +++
Sbjct: 127 QDDLAETFLMRLARGAGVDGLAAM---RPRWTQEGVTFH-----------RPLLGLAREA 172
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK----SELQAVISACRRTRS 316
+ +G + W++DPTN ++R R R L L+ +E+ +S R S
Sbjct: 173 LRDHLRGLRQTWIDDPTNVDTSYLRPRAREILAALAPLGLDAATLAEVACNLSDARTALS 232
Query: 317 YVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRG 375
+ H + +T ++ G +ID + + D + L LQ++ + P RG
Sbjct: 233 HTTHAAA----RTLTRVEAGDLLIDHAGF--ANLPDEIARRLLHGALQWLTGAEYPPRG 285
>gi|308066891|ref|YP_003868496.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
gi|305856170|gb|ADM67958.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
Length = 482
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 98/214 (45%), Gaps = 25/214 (11%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVIHMPLQLVCAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + + + E+ R D + G QEAAR++RY + + + + +A
Sbjct: 76 AEEVRNIARKLELPFEMTRVDVPAYMKESGKGPQEAARELRYNFLHDMATKWEAQHIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQAE +L L R SG GLAGM + + ++ L+RPLL K
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLAR--------------REKNVQLIRPLLRMYK 181
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D+ + C N +V D TN S + RN IRM +
Sbjct: 182 ADLIEFCNFYNLSYVTDSTNLSSKYRRNAIRMDV 215
>gi|349687683|ref|ZP_08898825.1| Ile-tRNA lysidine synthase [Gluconacetobacter oboediens 174Bp2]
Length = 424
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 101/210 (48%), Gaps = 35/210 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DSMAL +L W+ ++A+ VDHGLR ES+ EA
Sbjct: 29 VAVAVSGGADSMALAILARQWRRD--------------VVALVVDHGLRAESRTEAEQTL 74
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL--LIAHHAD 202
R+S + I ++ L G + + E AR MRY+ C QIGVL L+AHHA
Sbjct: 75 ARLSTLDIPGRLLV---LTGLERGSRMAERARRMRYQALSAAC--RQIGVLDLLVAHHAG 129
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++R +SG GLA MA + I +VRPLL F K +Y
Sbjct: 130 DQAETVMMRARADSGDDGLAAMAIVTPTV--------------DIRIVRPLLAFPKAALY 175
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ WVEDP+N R R R +L
Sbjct: 176 ATVRATGVAWVEDPSNHDLRTERARARQAL 205
>gi|399024106|ref|ZP_10726153.1| tRNA(Ile)-lysidine synthetase [Chryseobacterium sp. CF314]
gi|398081330|gb|EJL72110.1| tRNA(Ile)-lysidine synthetase [Chryseobacterium sp. CF314]
Length = 441
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 126/277 (45%), Gaps = 44/277 (15%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GL 132
+ G +H L VSGG DSM L L F D L + H L
Sbjct: 13 LVGTPENHTYLLAVSGGVDSMVLASL-----------------FNDSKLHFHIAHINYKL 55
Query: 133 R-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQ 191
R E+S + IV I + D +P + +Q AR++RY F+++ + +
Sbjct: 56 RGEDSDSDQKIVQDFCEKKHIPFHLYVVSGRDQKP-ENSIQLWARELRYNFFKQIREKEK 114
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVR 251
+ L+ AHH +DQ E FI+ LS+ SG+ GL+G+ + NH ++R
Sbjct: 115 LEFLVTAHHLNDQLETFIINLSKASGINGLSGIPAND---------------NH---ILR 156
Query: 252 PLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVI 308
PLL FSK+++Y + N ++ ED +N+ ++RN+IR + ++ F +
Sbjct: 157 PLLPFSKEEIYTFAKENNIEFREDLSNKKNDYLRNKIRNEIVPKLLETNDHFLENFKKSS 216
Query: 309 SACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 345
S +T+ +V+ I ++V + G+ +I E L
Sbjct: 217 SYLNQTKDFVQKQIKE-IESRISVFNNGHTIISKEKL 252
>gi|406027388|ref|YP_006726220.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri CD034]
gi|405125877|gb|AFS00638.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri CD034]
Length = 460
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 118/266 (44%), Gaps = 31/266 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VS G DSM L L ++ VDH LRE+S EE +S
Sbjct: 23 VVVAVSTGVDSMTLLYLLQHLPRA----------VRPKIIVAYVDHQLREQSVEETRYIS 72
Query: 145 HRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ S+ G+ + + W D P G ++ AAR RYR F++V + LL AHH DD
Sbjct: 73 NYCSEYGLLLK--QAVWSKDDHPTTG-IEAAARTFRYRFFKRVLKETGSTCLLTAHHGDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E I++L R + L G+ + S+A D K ++RPLL FSK +
Sbjct: 130 LVETVIMKLVRGGQLASLTGIRET----RSFA-----DAK-----MIRPLLSFSKQQLES 175
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR---TRSYVEH 320
Q W ED TN+ P RNRIR + L L V+S + + ++
Sbjct: 176 FAQTTGLRWFEDETNQQPAVERNRIRHGVMPLLKAENPQLLPHVLSYTNQLADNLAAIKF 235
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILN 346
+ LI+ AV ++ A IDL+ L
Sbjct: 236 LIQPLIHSAVGFSEKHRAEIDLDSLK 261
>gi|383755002|ref|YP_005433905.1| putative tRNA(Ile)-lysidine synthase [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381367054|dbj|BAL83882.1| putative tRNA(Ile)-lysidine synthase [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 466
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 97/211 (45%), Gaps = 27/211 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
RI SGG DSMAL L W+ A F + +HG+R E S +A
Sbjct: 23 RILAACSGGADSMAL--LDILWRL--------APRFQWQVAVAHYEHGIRGEASLADARF 72
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V+ I C + D + H L++AARD+RY Q++C + G + AHHA
Sbjct: 73 VADFCQKRRIPCFVEHGDVPGAAAENSHTLEQAARDLRYAFLQRICREKGFGYIATAHHA 132
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE ++R+ R +GV GL M S ILLVRPLL SK ++
Sbjct: 133 DDQAETVLMRILRGTGVKGLGAMRPYS---------------GDEILLVRPLLGASKAEI 177
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
C+ + ED TN RNR+R+ L
Sbjct: 178 MAYCEQAGLAFREDATNSVADCTRNRLRLEL 208
>gi|332187375|ref|ZP_08389113.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17]
gi|332012536|gb|EGI54603.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17]
Length = 330
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 32/208 (15%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDSMA+ +L A F + TVDHGLR E+ EE +V+
Sbjct: 33 LAVSGGPDSMAMLMLAAA-------------AFPGRIAVATVDHGLRPEAAEELRMVAEH 79
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+G+ +R P +G LQ AR+ RY L +L AHHADDQA
Sbjct: 80 CRILGVPHHGLRP----ATPIEGASLQAQAREARYALLADQARAIGAAAILTAHHADDQA 135
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E F++R +R +G+ GL+G+ ++I + + ++RPLLD+ + ++ +I
Sbjct: 136 ETFLMRAARGAGLSGLSGVRVRTEI--------------NGVPVLRPLLDWRRAELRQIV 181
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
+ +V+DP N P R R R LG
Sbjct: 182 RRAEAPFVDDPANHDPRHDRTRFRQLLG 209
>gi|145589046|ref|YP_001155643.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047452|gb|ABP34079.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 442
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 18/222 (8%)
Query: 71 SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130
S R + + LK RIA+ +SGG DS+ L +T + E + A + H
Sbjct: 3 SSRKSQSKLKSQKRIAVALSGGLDSVVLLDTVCKAQTTYKDSPTE-------IWAFHIHH 55
Query: 131 GLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH 190
GL++ + + I + R L QG+++ AR RY ++C+++
Sbjct: 56 GLQKPADDWLIFCEKLAKKYKIGFDF-RLLHLAQDTDQGNVEARARAGRYEALAELCVEY 114
Query: 191 QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLV 250
IG LL+AHH +DQAE +L+L R +GV GL+GM ++ HD + I L
Sbjct: 115 GIGDLLLAHHQNDQAETVLLQLLRGAGVAGLSGMPHEREL-------THDQSR---ITLW 164
Query: 251 RPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RPLL+ S+ ++ + W+EDP+N+ F RN IR +
Sbjct: 165 RPLLNQSRAELEVYAKANKLKWIEDPSNQKTQFRRNAIRKQI 206
>gi|337265844|ref|YP_004609899.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075]
gi|336026154|gb|AEH85805.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075]
Length = 455
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 91/180 (50%), Gaps = 26/180 (14%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRY 180
LLA+T+DHGLR++S EA V+ ++ GI R I W +P G L AAR+ RY
Sbjct: 52 LLAVTIDHGLRQDSAAEAQAVAKLCAERGIAHRTMI----WSGRKPSTG-LPAAAREARY 106
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV-----LGLAGMAFSSQIFSSYA 235
RL IG+++ H ADDQAE ++R +R+ + GLAGMA ++
Sbjct: 107 RLLASAARAEGIGLIVTGHTADDQAETVLMRHARDGSLGHVQGRGLAGMAPAT------- 159
Query: 236 YSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL-GD 294
L + +VRPLL + + Q + W EDPTN F R R+R +L GD
Sbjct: 160 ------LYDWREWIVRPLLGTRRAALRDFLQSKHVGWAEDPTNSDESFERPRVRAALAGD 213
>gi|294654541|ref|XP_456602.2| DEHA2A06402p [Debaryomyces hansenii CBS767]
gi|199428964|emb|CAG84558.2| DEHA2A06402p [Debaryomyces hansenii CBS767]
Length = 502
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 16/198 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + +SGG DS+ L L G F + + I AIT+DH R S +EA V
Sbjct: 23 RIVVALSGGVDSLCLTYLL-----GQFKRIYKPSLQIT---AITIDHKYRAGSGKEAEKV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V G++ IV+ + R K + +E AR+ RY +F++VC + + L++AH+
Sbjct: 75 GVLVRPWGVK-HIVKTLEYEDRDIGKITNFEEVAREKRYDIFEQVCRELDVKSLIVAHNL 133
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQI-FSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+DQ E F+ RL +NS + GL G+ + S + S + D SI +VRPLL F K +
Sbjct: 134 NDQIETFLQRLQQNSSIFGLVGLRTVDHLPISPTSPSENGD----SIHVVRPLLSFDKSE 189
Query: 261 MYKICQGGNRDWVEDPTN 278
+ + C W ED TN
Sbjct: 190 IIETCTKNGIRWFEDHTN 207
>gi|46203193|ref|ZP_00208846.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
cell cycle control [Magnetospirillum magnetotacticum
MS-1]
Length = 343
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDS AL + TG L T+DHGLR S EA V H
Sbjct: 29 LAVSGGPDSTALMHVAVRAGTGAH------------LRVATIDHGLRPGSAGEARAVGHL 76
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+MG+ I+ + P+ G +QE ARD RYRL ++L AH DDQA
Sbjct: 77 AGEMGLTHAILAWES----PRSGSRIQETARDARYRLLTDHAASLGADLVLTAHTLDDQA 132
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E ++RL SG GLAGM H+ I L RP L K D+ C
Sbjct: 133 ETVLMRLMAGSGPAGLAGM-------------RHERPLAPGIRLARPFLAVPKADLVAYC 179
Query: 266 QGGNRDWVEDPTN 278
+ +V DP+N
Sbjct: 180 EAHRLPFVRDPSN 192
>gi|228937366|ref|ZP_04100013.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970252|ref|ZP_04130912.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228976822|ref|ZP_04137235.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
gi|228782918|gb|EEM31083.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
gi|228789487|gb|EEM37406.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228822324|gb|EEM68305.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 480
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLNLIPRIDPSNKKEVYTRNRLR 211
>gi|433543169|ref|ZP_20499581.1| tRNA(Ile)-lysidine synthetase [Brevibacillus agri BAB-2500]
gi|432185528|gb|ELK43017.1| tRNA(Ile)-lysidine synthetase [Brevibacillus agri BAB-2500]
Length = 475
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 27/295 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P I +GVSGG DS AL + A N+ + G L A+ ++HG R EE++
Sbjct: 15 LLPGETIVVGVSGGNDSTALLHILAS-----LNKQYQYGW---KLHAVHLNHGFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLL 196
+A S++G + D K G QEA+R++RYR +++V H L
Sbjct: 67 LDAQYAEALCSELGAVFHLFAYDVPSYMKKTGKGSQEASRELRYRFYREVGSAHGASKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E + RL R S + GL GM L++ + LVRPLL
Sbjct: 127 LAHHADDQVETILFRLVRGSRLQGLTGMPQRRM------------LEDSEMELVRPLLHK 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRR 313
++ ++ CQ ED +NRS + RN +R+ + L + ++ + + A +
Sbjct: 175 TRQELEAYCQENRLVPREDSSNRSRKYKRNLLRLDVMPLLAEVNERYREHILDLARAISQ 234
Query: 314 TRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQ 368
+++ + ++EA Q +ID + + + + L+L ++ +
Sbjct: 235 DEAFLTRLARERLDEATIEKKQEAFMIDKDKFQTCDV--ALQRRMITLILSYLSK 287
>gi|86748940|ref|YP_485436.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
HaA2]
gi|86571968|gb|ABD06525.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
HaA2]
Length = 346
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 90/205 (43%), Gaps = 25/205 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L VSGGPDS+AL L A W+ + G A L +T+DHGLR E+ EA V
Sbjct: 27 IVLAVSGGPDSLALMWLAARWRKA--RKRGPA------LFVVTIDHGLRPEAAREARSVK 78
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+ +R W +P G A L + ++ AH DDQ
Sbjct: 79 QFARTLGLPHRTLR--WTGDKPATGLPAAARAARYRLLAKAAKAVGAAHIM-TAHTRDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RLSR SG+ GLA M + +LVRPLLD SK +
Sbjct: 136 AETVLMRLSRGSGIAGLAAMPRETA--------------RDGAVLVRPLLDVSKQRLVAT 181
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
+ DP+N P F R R+R
Sbjct: 182 LDRAKIGFAVDPSNADPRFTRPRLR 206
>gi|421852948|ref|ZP_16285630.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371478799|dbj|GAB30833.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 430
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 38/262 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DS+ L L + W+ LLA+ VDHGLR ES +EA
Sbjct: 42 IAMAVSGGGDSLCLAWLASFWRKN--------------LLALVVDHGLRPESGQEAQQTI 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ M I +++ L K + AR+ RY C ++ LL+ H ADD
Sbjct: 88 ARLRAMNIPAQLLV---LTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADDL 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +R + +SG GLAGM + + D++ L+RPLL FS+ +
Sbjct: 145 AETVWMRQNSSSGPEGLAGMGW---------ITVRPDIR-----LIRPLLGFSRAALRNT 190
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSL--GDLSSCSFKSELQAVISACRRTRSYVEHVC 322
+ + +WV+DP+N+ R R+R L D + +K +Q+ R+ R +
Sbjct: 191 LRQAHLEWVDDPSNQDQRAERVRLRFLLQENDQRAHFWKLGMQSGQLRMRKERERAVQLV 250
Query: 323 SNLINEAVTVMDQGYAVIDLEI 344
+ V + +G+A + E+
Sbjct: 251 QH-----VVMCPEGWAALGPEL 267
>gi|75761780|ref|ZP_00741716.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228898817|ref|ZP_04063100.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
gi|228905860|ref|ZP_04069758.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
gi|228963164|ref|ZP_04124334.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|74490730|gb|EAO54010.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228796549|gb|EEM43987.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228853800|gb|EEM98559.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
gi|228860842|gb|EEN05219.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
Length = 480
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLNLIPRIDPSNKKEVYTRNRLR 211
>gi|399046103|ref|ZP_10738640.1| tRNA(Ile)-lysidine synthetase [Brevibacillus sp. CF112]
gi|398055888|gb|EJL47938.1| tRNA(Ile)-lysidine synthetase [Brevibacillus sp. CF112]
Length = 475
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 27/295 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P I +GVSGG DS AL + A N+ + G L A+ ++HG R EE++
Sbjct: 15 LLPGETIVVGVSGGNDSTALLHILAS-----LNKQYQYGW---KLHAVHLNHGFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLL 196
+A S++G + D K G QEA+R++RYR +++V H L
Sbjct: 67 LDAQYAEALCSELGAVFHLFAYDVPSYMKKTGKGSQEASRELRYRFYREVGSAHGASKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E + RL R S + GL GM L++ + LVRPLL
Sbjct: 127 LAHHADDQVETILFRLVRGSRLQGLTGMPQRRM------------LEDSEMELVRPLLHK 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRR 313
++ ++ CQ ED +NRS + RN +R+ + L + ++ + + A +
Sbjct: 175 TRQELEAYCQENRLVPREDSSNRSRKYKRNLLRLDVMPLLAEVNERYREHILDLARAISQ 234
Query: 314 TRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQ 368
+++ + ++EA Q +ID + + + + L+L ++ +
Sbjct: 235 DEAFLTRLARERLDEATIEKTQEAFMIDKDKFQTCDV--ALQRRMITLILSYLSK 287
>gi|258543660|ref|YP_003189093.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-01]
gi|384043578|ref|YP_005482322.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-12]
gi|384052095|ref|YP_005479158.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-03]
gi|384055204|ref|YP_005488298.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-07]
gi|384058437|ref|YP_005491104.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-22]
gi|384061078|ref|YP_005500206.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-26]
gi|384064370|ref|YP_005485012.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-32]
gi|384120383|ref|YP_005503007.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256634738|dbj|BAI00714.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-01]
gi|256637794|dbj|BAI03763.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-03]
gi|256640848|dbj|BAI06810.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-07]
gi|256643903|dbj|BAI09858.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-22]
gi|256646958|dbj|BAI12906.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-26]
gi|256650011|dbj|BAI15952.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-32]
gi|256653001|dbj|BAI18935.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256656055|dbj|BAI21982.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
3283-12]
Length = 435
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 31/208 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DS+ L L + W+ LLA+ VDHGLR ES +EA
Sbjct: 47 IAMAVSGGGDSLCLAWLASFWRKN--------------LLALVVDHGLRPESGQEAQQTI 92
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ M I +++ L K + AR+ RY C ++ LL+ H ADD
Sbjct: 93 ARLRAMNIPAQLLV---LTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADDL 149
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +R + +SG GLAGM + + D++ L+RPLL FS+ +
Sbjct: 150 AETVWMRQNSSSGPEGLAGMGW---------ITVRPDIR-----LIRPLLGFSRTALRNT 195
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + +WV+DP+N+ R R+R L
Sbjct: 196 LRQAHLEWVDDPSNQDQRAERVRLRFLL 223
>gi|346320764|gb|EGX90364.1| PP-loop family protein [Cordyceps militaris CM01]
Length = 721
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 63 MTKYREAF----SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAG 117
++++REA R L I L VSGG DSMAL L + + KT + A
Sbjct: 47 ISEFREAILATCKPRFPNVRLARRRPIGLAVSGGVDSMALAYLFSHYIKT--YKSQHIAD 104
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG------RPKQGHL 171
+ +LA+TVDH LR ES EA V+ V +G+R ++R +W D KQ ++
Sbjct: 105 NPVHDVLAVTVDHRLRPESTAEAAKVAANVRHLGLRALVLRINWSDHLGPDVVPSKQPNI 164
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
+ AR +RYR + ++ + L HH DDQ E ++RL G GL G+ ++ I
Sbjct: 165 ESMARTLRYRALGSLFLKQNVMSLFFGHHRDDQYETILMRLLSGHGYRGLQGIHKANSIP 224
Query: 232 SSY-AYSCHDDLKNHSILLVRPLLDFS 257
+ Y Y + L +RP L FS
Sbjct: 225 ACYDMYGAYKSGLVDDQLRLRPFLKFS 251
>gi|384184146|ref|YP_005570042.1| cell cycle protein MesJ [Bacillus thuringiensis serovar chinensis
CT-43]
gi|326937855|gb|AEA13751.1| cell cycle protein MesJ [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 430
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR---------AEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLIPRIDPSNKKEVYTRNRLR 207
>gi|159899546|ref|YP_001545793.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus DSM 785]
gi|159892585|gb|ABX05665.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus DSM 785]
Length = 486
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 27/217 (12%)
Query: 85 IALGVSGGPDSMALC-VLTA-----GWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
+ + VSGGPDS+AL LTA GW+ L +DHGLR E+S
Sbjct: 23 LVVAVSGGPDSLALLHRLTALATPYGWR----------------LHVAHLDHGLRGEQSA 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH--LQEAARDMRYRLFQKVCIQHQIGVL 195
EA V+ +D G+ I D +D KQ H L AAR RYR +V +Q Q +
Sbjct: 67 AEAAFVAEIAADWGLTATIELRD-VDQVAKQYHVGLPAAARATRYRFLAEVALQQQADAV 125
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
++ H +DDQAE +L + R +G GL+ M ++ + + + + L+RP+L+
Sbjct: 126 VLGHQSDDQAETVLLHVLRGTGPSGLSAMRPRTE-WVGWRVTAGMPHQAVGPALIRPMLN 184
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++D++ C + DPTN S + R RIR L
Sbjct: 185 ITRDEIEAYCDEQQLEPRRDPTNNSLEYTRGRIRHQL 221
>gi|218895199|ref|YP_002443610.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
gi|402562845|ref|YP_006605569.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis HD-771]
gi|423364626|ref|ZP_17342095.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD022]
gi|423565579|ref|ZP_17541854.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-A1]
gi|434378706|ref|YP_006613350.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis HD-789]
gi|218545400|gb|ACK97794.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
gi|401072738|gb|EJP81200.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD022]
gi|401193656|gb|EJR00660.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-A1]
gi|401791497|gb|AFQ17536.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis HD-771]
gi|401877263|gb|AFQ29430.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis HD-789]
Length = 476
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLIPRIDPSNKKEVYTRNRLR 207
>gi|383642383|ref|ZP_09954789.1| tRNA(Ile)-lysidine synthetase [Sphingomonas elodea ATCC 31461]
Length = 336
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 119 FIDGLLAITVDHGLREESKEEANIVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAAR 176
F + A TVDHGLR ES EEA V + +G+ C R LDG G+LQ+ AR
Sbjct: 62 FPGVVAAATVDHGLRAESAEEAAFVGAVCARIGVLHTCLPPRPGMLDG----GNLQDRAR 117
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
MRYR + +AH DD AE F+LR R +GV GLA M + +
Sbjct: 118 AMRYRCLADWAATAGAPWVAVAHQQDDVAETFLLRARRGAGVGGLAAMLPVRPLGAG--- 174
Query: 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 296
+ LVRPLL +S+ + + + VEDP+NR P F R R+R L S
Sbjct: 175 ---------GVQLVRPLLGWSRARLADLVARAGIESVEDPSNRHPRFDRARMRGLLAQTS 225
>gi|410672435|ref|YP_006924806.1| tRNA(Ile)-lysidine synthase TilS [Bacillus thuringiensis Bt407]
gi|423387028|ref|ZP_17364283.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1X1-2]
gi|423526638|ref|ZP_17503083.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB1-1]
gi|452196439|ref|YP_007476520.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|401630282|gb|EJS48088.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1X1-2]
gi|402455131|gb|EJV86915.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB1-1]
gi|409171564|gb|AFV15869.1| tRNA(Ile)-lysidine synthase TilS [Bacillus thuringiensis Bt407]
gi|452101832|gb|AGF98771.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 476
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLIPRIDPSNKKEVYTRNRLR 207
>gi|220930904|ref|YP_002507812.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168]
gi|219992214|gb|ACL68817.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168]
Length = 468
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 129/288 (44%), Gaps = 32/288 (11%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
+ K+RE + +K + +GVSGGPDS+ L + K E+
Sbjct: 4 LKKFREYINHHKL---IKKGDGVLVGVSGGPDSLTLLDMLVRVKD----------EYGLK 50
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYR 181
L+ +DH R+E+ EA VS+ ++ G++C I D +G +EAAR +R+
Sbjct: 51 LVVFHLDHKFRQEAAREARYVSNITNNYGLKCIIEEFDVPGLMNDEGLSPEEAARKVRFN 110
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
L K + + +AH+ DD E L + R +G+ GL G+ S+I
Sbjct: 111 LMIKWVNSLNLNKIAVAHNKDDLVETVFLHMFRGTGLKGLTGIDPVSRI----------- 159
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSS 297
+ ++ PLL+ + ++ CQ N + V DPTN+ ++ RN+IR + D +
Sbjct: 160 ---GGVEVIHPLLNIYRQEIMDYCQRRNLNPVYDPTNQETIYTRNKIRHHIIPYIEDEIN 216
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 345
K + + R +++++ + + + Q Y ++ LE L
Sbjct: 217 PGLKDVIYQMAEVVREENNFLDYQAEKNLKKVLVDKGQDYVILSLEKL 264
>gi|311070714|ref|YP_003975637.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942]
gi|419823417|ref|ZP_14346967.1| tRNAile lysidine synthetase [Bacillus atrophaeus C89]
gi|310871231|gb|ADP34706.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942]
gi|388472460|gb|EIM09233.1| tRNAile lysidine synthetase [Bacillus atrophaeus C89]
Length = 472
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 113/253 (44%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL + G A I A VDH R S+E+ V
Sbjct: 20 IIVGVSGGPDSMALLNFL-------HTRFGRASVII----AAHVDHSFRGAASEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
I CE V+ D + + L Q AAR+ RYR F+ + ++HQ L +AHH
Sbjct: 69 QAYCKTERITCETVKMD-VSAYAEMNRLNKQAAARECRYRFFKDLMVKHQADYLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAG+ + + + L+RP L +K+D+
Sbjct: 128 DDQVETMLMRLAKGTLGAGLAGIQPVRKFETGW--------------LIRPFLSITKEDV 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
C + + D +N + RNR R ++ S + Q V + Y+
Sbjct: 174 LTYCLEHDVRYRTDESNAKDDYTRNRFRKAVLPFLKQESHDVHRKFQKVSESLTEDEQYL 233
Query: 319 EHVCSNLINEAVT 331
+ + + +N+ +T
Sbjct: 234 QSLTKDEMNKVIT 246
>gi|119478960|ref|XP_001259509.1| PP-loop family protein [Neosartorya fischeri NRRL 181]
gi|119407663|gb|EAW17612.1| PP-loop family protein [Neosartorya fischeri NRRL 181]
Length = 638
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 119/296 (40%), Gaps = 63/296 (21%)
Query: 64 TKYREAFSR-----RMAMAGLKPHHRI----ALGVSGGPDSMALCVLTAGWKTGGFNQNG 114
+++ E F R R++ G + + I L VSGG DSMAL L +
Sbjct: 18 SQFLEHFQRAWCESRLSWGGRQTNRHIPSNLGLAVSGGADSMALAFLC---------KQL 68
Query: 115 EAGEFIDGLL--AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQ 172
+ +DGL A VDH REES EA V+ +SDMG++ +I+ +W G +
Sbjct: 69 QEQNLVDGLTVTAFVVDHKAREESSREARNVATWLSDMGLQAQILELEWPQGS-SVSAFE 127
Query: 173 EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL---SRNSGVLGLAGMAFSSQ 229
AR +R++ C +I LL+ HH DD E + RL +R +G+ G+ +A +
Sbjct: 128 THARRLRFQALGIACRDRRISALLMGHHQDDNVETTLWRLCTGARGAGLAGIPPIARIPE 187
Query: 230 IFSSYAYS---------CHDD-----------------------------LKNHSILLVR 251
Y S DD + ILL R
Sbjct: 188 CHGLYGVSESGSLAILRPRDDRAGAPSALSGNTTTSQVQGKDEGKQPGFSMATGGILLCR 247
Query: 252 PLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDLSSCSFKSELQA 306
PLL F K + C +V DPTN P L RN IR + S LQA
Sbjct: 248 PLLAFPKASLLATCHQHRIPYVSDPTNFDPTLTPRNAIRSLVSPSSPPLLPRALQA 303
>gi|228919014|ref|ZP_04082394.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840663|gb|EEM85924.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 480
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 211
>gi|423583713|ref|ZP_17559824.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD014]
gi|401208345|gb|EJR15112.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD014]
Length = 476
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|423633606|ref|ZP_17609259.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD156]
gi|401283316|gb|EJR89211.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD156]
Length = 476
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|30018334|ref|NP_829965.1| cell cycle protein MesJ [Bacillus cereus ATCC 14579]
gi|423651384|ref|ZP_17626954.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD169]
gi|61216614|sp|Q81J84.1|TILS_BACCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|29893874|gb|AAP07166.1| Cell cycle protein MesJ [Bacillus cereus ATCC 14579]
gi|401278436|gb|EJR84369.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD169]
Length = 476
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|228950612|ref|ZP_04112747.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229077353|ref|ZP_04210023.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
gi|228705950|gb|EEL58266.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
gi|228809087|gb|EEM55571.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 480
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 211
>gi|228956505|ref|ZP_04118302.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229107750|ref|ZP_04237387.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
gi|229142870|ref|ZP_04271312.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
gi|229148473|ref|ZP_04276730.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
gi|228635015|gb|EEK91587.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
gi|228640582|gb|EEK96970.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
gi|228675723|gb|EEL30930.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
gi|228803195|gb|EEM50016.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 480
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 211
>gi|423589362|ref|ZP_17565448.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD045]
gi|401224015|gb|EJR30575.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD045]
Length = 476
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|229125581|ref|ZP_04254614.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
gi|228657898|gb|EEL13703.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
Length = 480
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 211
>gi|229067828|ref|ZP_04201146.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
gi|229176664|ref|ZP_04304069.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
gi|229188349|ref|ZP_04315398.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
gi|228595148|gb|EEK52918.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
gi|228606831|gb|EEK64247.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
gi|228715312|gb|EEL67170.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
Length = 480
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 211
>gi|218235253|ref|YP_002364913.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
gi|423632861|ref|ZP_17608606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD154]
gi|423644700|ref|ZP_17620317.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD166]
gi|423658458|ref|ZP_17633757.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD200]
gi|218163210|gb|ACK63202.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
gi|401258905|gb|EJR65086.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD154]
gi|401269484|gb|EJR75514.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD166]
gi|401287791|gb|EJR93562.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD200]
Length = 476
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|296500896|ref|YP_003662596.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
gi|296321948|gb|ADH04876.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
Length = 476
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|423427616|ref|ZP_17404647.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3X2-2]
gi|423506581|ref|ZP_17483170.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HD73]
gi|449086730|ref|YP_007419171.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|401108011|gb|EJQ15947.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3X2-2]
gi|402447406|gb|EJV79258.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HD73]
gi|449020487|gb|AGE75650.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 476
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|110679379|ref|YP_682386.1| hypothetical protein RD1_2100 [Roseobacter denitrificans OCh 114]
gi|109455495|gb|ABG31700.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 414
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 135/320 (42%), Gaps = 38/320 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DSMAL VL G+ +NG A L TVDHGLR E+ +EA V+
Sbjct: 20 LGVAVSGGSDSMALLVLLCGFA----ERNGVA------LSCATVDHGLRPEAADEARSVA 69
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + ++ + DG G+ Q AAR RYRL I + + H DDQ
Sbjct: 70 GYCAAHDVPHVTLKWEGWDG---TGNTQNAARVARYRLLADWARGQGIADIALGHTQDDQ 126
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++ L+R SGV GL+ M + DD + RPLL S+ +
Sbjct: 127 AETVLMGLARASGVDGLSAMP-----------ARRDD---RGLCWHRPLLATSRAGLRGF 172
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-KSELQAVISACRRTRSYVEHVCS 323
W EDP+N F R + R +L L+ ++ L V + R+ +E
Sbjct: 173 LSANGVAWCEDPSNDDAQFERIKARRALTTLAELGVDRASLAQVAQNMAQARAALEQQTR 232
Query: 324 NLINEAVTVMDQGYAVIDLEILN--PSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLL 381
I + V+++ G A++ PS+I + L + +I P K L
Sbjct: 233 RAIGDLVSLLGGG-AMMPWSGFQTLPSEIA----RRVLMAAIDWIAA---PPHAPRQKAL 284
Query: 382 LHYIRTFPCKTSLTAAGCYL 401
+ S T AGC L
Sbjct: 285 TAALSALRASGSATVAGCRL 304
>gi|229039969|ref|ZP_04189733.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
gi|228727377|gb|EEL78570.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
Length = 480
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 211
>gi|423513003|ref|ZP_17489533.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA2-1]
gi|402446351|gb|EJV78211.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA2-1]
Length = 476
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 29/258 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRR 313
+K+++ C DP+N+ ++ RNR+R + + + Q +
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQIQE 234
Query: 314 TRSYVEHVCSNLINEAVT 331
+Y++ + +N+ +T
Sbjct: 235 DEAYLQELAFEKMNKVIT 252
>gi|206972582|ref|ZP_03233525.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
gi|206732484|gb|EDZ49663.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
Length = 476
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|423438944|ref|ZP_17415925.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4X12-1]
gi|401115432|gb|EJQ23284.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4X12-1]
Length = 476
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|85372930|ref|YP_456992.1| ATPase [Erythrobacter litoralis HTCC2594]
gi|84786013|gb|ABC62195.1| ATPase [Erythrobacter litoralis HTCC2594]
Length = 319
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 136/309 (44%), Gaps = 35/309 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGGPDS+AL +L G ++A T+DHGLR E+ +EA +V
Sbjct: 15 RLGVAVSGGPDSLALLLLANTALPGR-------------VVAATIDHGLRPEAADEAAMV 61
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+G+ V + G+ Q+ AR RY + + AHHADD
Sbjct: 62 GGLCERLGVLHHTVEVAL-----EPGNTQDRARKARYEALCRCFGEQGADTFATAHHADD 116
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE ++R +R SG+ GLAG+ + + S L+VRPLL++ ++++
Sbjct: 117 QAETLLMRFNRGSGLSGLAGIRARTVLLSPEPLG--------EYLVVRPLLEWRREELAG 168
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD------LSSCSFKSELQAVISACRRTRSY 317
I V+DP+N + R ++R +L D L+ LQ A RR+ +
Sbjct: 169 IVADAGLAPVQDPSNVDTRYDRVQVRRALADLPWLDPLAMARSARHLQEAEDAVRRSSAD 228
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIE---DIFLSKFLALVLQFICQRQRPVR 374
V + C+ E V +++E + +E D+ S L+ Q + + +
Sbjct: 229 VYNRCTYREGETVWFHWGHARTVEIEAVRLILLEFGADVPRSSIARLIDQLMSEGAGSLG 288
Query: 375 GSTSKLLLH 383
G ++ H
Sbjct: 289 GVVARRAWH 297
>gi|295702306|ref|YP_003595381.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319]
gi|294799965|gb|ADF37031.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319]
Length = 458
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 31/263 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +G+SGGPDS+AL K E ++A VDH R EES+++ V
Sbjct: 21 VVVGISGGPDSLALLHFLWSLK--------EQKSLT--IIAAHVDHMFRGEESQQDMEYV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + I+CE + D + K+ L Q AAR+ RY F V +H+ L + HH
Sbjct: 71 QNYCKQLNIKCEAKQID-VTAYQKERKLSSQVAARECRYTFFTHVMKKHKANFLALGHHG 129
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++R+ R S + G AGM Q YA ++RP L +K+++
Sbjct: 130 DDQIETMLMRMVRGSTMNGYAGM----QPKRPYADG----------FIIRPFLAVTKEEI 175
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYV 318
+ C+ DP+N + RNR R + + + + Q ++Y+
Sbjct: 176 NRYCKLHGLTPRIDPSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYL 235
Query: 319 EHVCSNLINEAVTVMDQGYAVID 341
E + ++++N+ + Q +ID
Sbjct: 236 EELTTDVMNKVMRKKLQNEILID 258
>gi|294496939|ref|YP_003560639.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551]
gi|294346876|gb|ADE67205.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551]
Length = 458
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/448 (22%), Positives = 186/448 (41%), Gaps = 56/448 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +G+SGGPDS+AL K E ++A VDH R +ESK++ V
Sbjct: 21 VVVGISGGPDSLALLHFLWSLK--------EQKSLT--IIAAHVDHMFRGKESKQDMEYV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + I+CE + D + K+ L Q AAR+ RY F V +H+ +L + HH
Sbjct: 71 QNYCKQLNIKCEAKQID-VTAYQKERKLSSQVAARECRYTFFNHVMKKHKANLLALGHHG 129
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++R+ R S + G AGM Q YA ++RP L +K+++
Sbjct: 130 DDQIETMLMRMVRGSTMNGYAGM----QPKRPYADG----------FIIRPFLAVTKEEI 175
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYV 318
+ C+ DP+N + RNR R + + + + Q ++Y+
Sbjct: 176 NRYCKLHGLTPRIDPSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYL 235
Query: 319 EHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTS 378
E + + ++N+ + Q +ID + +I + + L+L ++ + P S
Sbjct: 236 EELTTGVMNKVMRKKLQNEILIDRDCF--LRIRKPLQRRGIQLILNYLYKEIPPTLSSAH 293
Query: 379 -KLLLHYIRT--------FPCKTSLTAA--GCYLCPTPGSRGTKALVCSSIDGPLPSKLE 427
+L+ + + FP + + C G+ + P+P +E
Sbjct: 294 IDMLVGFCESEKPSGTLDFPNGLRIIRSYNDCLFTFNEGNIEPYEFIV-----PIPGVVE 348
Query: 428 LFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSE 487
L +G Q C ++ +ED K L+ +A D L + + + + M
Sbjct: 349 L----PNGHQLIC--EIHNKVEDIKGNDVFLLDEAHDLQSLKVRTRKNGDKMRVKGMKGH 402
Query: 488 STYKNILLLQREEIKRFKLDSEVTSDSQ 515
K+I + ++ ++ F+ V DSQ
Sbjct: 403 KKVKDIFIDEKIPLQ-FRDHWPVVEDSQ 429
>gi|229074125|ref|ZP_04207172.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
gi|228709019|gb|EEL61145.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
Length = 480
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVNYCNELNLIPRIDPSNKKEVYTRNRLR 211
>gi|333977710|ref|YP_004515655.1| tRNA(Ile)-lysidine synthase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821191|gb|AEG13854.1| tRNA(Ile)-lysidine synthase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 34/265 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
+ P ++ +GVSGGPDS+AL L W+ E L ++H R EE++
Sbjct: 17 ISPGDKVLVGVSGGPDSVALLHLL--WRM--------KEELQISLAVAHLNHMFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
+A +V +G+ + D R + G Q+AAR +RYR F++V + +
Sbjct: 67 ADARLVEGLAKSLGLPVHVEEFDVPAYRERTGLSAQDAARRVRYRFFEEVARRTGASRVA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HHADDQAE + R +G+ GL G+ + Y +RPLLD
Sbjct: 127 LGHHADDQAETILFNFLRGTGLAGLKGI---PPVRGKY---------------IRPLLDI 168
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI----SACR 312
+ ++ C+ + ED +N+ ++ RNRIR+ L + L + CR
Sbjct: 169 RRREIEDYCREHSLPVREDASNKKTIYTRNRIRLELIPRLEADYNPRLVDALVHLGHICR 228
Query: 313 RTRSYVEHVCSNLINEAVTVMDQGY 337
Y+E + L A+ + Y
Sbjct: 229 EENDYLEEQAALLYGRALKTQKEHY 253
>gi|423618754|ref|ZP_17594587.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD115]
gi|401252596|gb|EJR58852.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD115]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLLEKR----------AEKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNELNLIPRIDPSNKKEVYTRNRLR 207
>gi|423370748|ref|ZP_17348152.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD142]
gi|401073335|gb|EJP81760.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD142]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 29/258 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRR 313
+K+++ C DP+N+ ++ RNR+R + + + Q +
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQE 234
Query: 314 TRSYVEHVCSNLINEAVT 331
+Y++ + +N+ +T
Sbjct: 235 DEAYLQELAFEKMNKVIT 252
>gi|163938071|ref|YP_001642955.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4]
gi|423456694|ref|ZP_17433544.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5X1-1]
gi|423556940|ref|ZP_17533243.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MC67]
gi|423595294|ref|ZP_17571324.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD048]
gi|423659618|ref|ZP_17634787.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM022]
gi|163860268|gb|ABY41327.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4]
gi|401128441|gb|EJQ36131.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5X1-1]
gi|401194019|gb|EJR01016.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MC67]
gi|401222220|gb|EJR28817.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD048]
gi|401304637|gb|EJS10187.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM022]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 29/258 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRR 313
+K+++ C DP+N+ ++ RNR+R + + + Q +
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQE 234
Query: 314 TRSYVEHVCSNLINEAVT 331
+Y++ + +N+ +T
Sbjct: 235 DEAYLQELAFEKMNKVIT 252
>gi|423597213|ref|ZP_17573213.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD078]
gi|401239554|gb|EJR45979.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD078]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 207
>gi|423520632|ref|ZP_17497105.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA4-10]
gi|401180528|gb|EJQ87686.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA4-10]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 207
>gi|407708013|ref|YP_006831598.1| 4-hydroxyphenylpyruvate dioxygenase [Bacillus thuringiensis MC28]
gi|407385698|gb|AFU16199.1| tRNA-lysidine synthase [Bacillus thuringiensis MC28]
Length = 480
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVNYCNELNLIPRIDPSNKKEVYTRNRLR 211
>gi|423671094|ref|ZP_17646123.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM034]
gi|423672683|ref|ZP_17647622.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM062]
gi|401293925|gb|EJR99558.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM034]
gi|401311415|gb|EJS16716.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VDM062]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 207
>gi|365164163|ref|ZP_09360248.1| tRNA(Ile)-lysidine synthase [Bacillus sp. 7_6_55CFAA_CT2]
gi|363613178|gb|EHL64700.1| tRNA(Ile)-lysidine synthase [Bacillus sp. 7_6_55CFAA_CT2]
Length = 279
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLYYLLEKR---------AEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|372324235|ref|ZP_09518824.1| tRNA(Ile)-lysidine synthetase [Oenococcus kitaharae DSM 17330]
gi|366983043|gb|EHN58442.1| tRNA(Ile)-lysidine synthetase [Oenococcus kitaharae DSM 17330]
Length = 300
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 24/207 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + +SGG DS L L +++ + D L VDH LR +S +E ++
Sbjct: 23 KVLVAISGGVDSTVLANLLFKYES----------QPSDHLFLAHVDHQLRPDSFKEKELI 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + G+ ++ W + ++ AARD RY+ +++V + I +++A HA+D
Sbjct: 73 DRQFASRGL--QVFHKIWPRSQHPTSGIENAARDFRYQFYEEVASRLGISTIILAQHAND 130
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE +L+L R ++ M +S + +S I +VRPLL+ K D+Y
Sbjct: 131 QAETTLLKLIRGGDWETISAMNWSRPLNNS-----------SDIRVVRPLLNIKKADLYA 179
Query: 264 ICQGGNRDWVEDPTNRSPLFV-RNRIR 289
+ +W+EDP+N+ P + RN+IR
Sbjct: 180 YAKSTGLEWIEDPSNQDPDYTSRNQIR 206
>gi|229009573|ref|ZP_04166800.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048]
gi|229053910|ref|ZP_04195345.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603]
gi|229131071|ref|ZP_04259984.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196]
gi|229165052|ref|ZP_04292848.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621]
gi|228618437|gb|EEK75466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621]
gi|228652408|gb|EEL08332.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196]
gi|228721451|gb|EEL72971.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603]
gi|228751717|gb|EEM01516.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048]
Length = 480
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 23 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 211
>gi|42779142|ref|NP_976389.1| hypothetical protein BCE_0061 [Bacillus cereus ATCC 10987]
gi|402554350|ref|YP_006595621.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus FRI-35]
gi|61216566|sp|Q73FE5.1|TILS_BACC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|42735057|gb|AAS38997.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
gi|401795560|gb|AFQ09419.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus FRI-35]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSVALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCHKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|423520203|ref|ZP_17496684.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA2-4]
gi|401155468|gb|EJQ62878.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuA2-4]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 207
>gi|229136910|ref|ZP_04265538.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26]
gi|228646575|gb|EEL02781.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26]
Length = 480
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSVALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCHKLKIIPRIDPSNKKEVYTRNRLR 211
>gi|217957639|ref|YP_002336181.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187]
gi|375282160|ref|YP_005102593.1| hypothetical protein BCN_0060 [Bacillus cereus NC7401]
gi|423357793|ref|ZP_17335385.1| tRNA(Ile)-lysidine synthase [Bacillus cereus IS075]
gi|423572014|ref|ZP_17548230.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-A12]
gi|217067016|gb|ACJ81266.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187]
gi|358350681|dbj|BAL15853.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401073974|gb|EJP82382.1| tRNA(Ile)-lysidine synthase [Bacillus cereus IS075]
gi|401199148|gb|EJR06058.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-A12]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSVALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCHKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|423399617|ref|ZP_17376790.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-2]
gi|401658223|gb|EJS75720.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-2]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|423471711|ref|ZP_17448455.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6O-2]
gi|402430809|gb|EJV62883.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6O-2]
Length = 476
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 118/258 (45%), Gaps = 29/258 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRR 313
+K+++ C DP+N+ ++ RNR+R + + + Q +
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQE 234
Query: 314 TRSYVEHVCSNLINEAVT 331
+Y++ + +N+ +T
Sbjct: 235 DEAYLQELAFEKMNKVIT 252
>gi|449092780|ref|YP_007425271.1| tRNA(Ile)-lysidine synthase [Bacillus subtilis XF-1]
gi|449026695|gb|AGE61934.1| tRNA(Ile)-lysidine synthase [Bacillus subtilis XF-1]
Length = 486
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 34 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RYR F+++ +HQ L +AHH D
Sbjct: 83 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYRFFEEIMSKHQADYLALAHHGD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + GLAGM + + ++RP L +K+++
Sbjct: 143 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR--------------IIRPFLTITKEEIL 188
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ + D +N + RNR R ++ S Q V A +++
Sbjct: 189 HYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQ 248
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 249 SLTKDEMNKVIT 260
>gi|423388167|ref|ZP_17365393.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1X1-3]
gi|401644357|gb|EJS62049.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1X1-3]
Length = 476
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY + + ++ +
Sbjct: 69 EDLQFVQGLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 207
>gi|423480161|ref|ZP_17456873.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6X1-1]
gi|402423664|gb|EJV55870.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6X1-1]
Length = 476
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|329113827|ref|ZP_08242598.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001]
gi|326696837|gb|EGE48507.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001]
Length = 435
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 31/205 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DS+ L L + W+ LLA+ VDHGLR ES EA+
Sbjct: 47 VAMAVSGGGDSLCLAWLASFWRKN--------------LLALVVDHGLRPESGLEAHQTL 92
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ M I +++ L K + AR+ RY C +H LL+ H ADD
Sbjct: 93 ARLQAMNIPAQLLV---LTDLKKGSAMAHRAREARYARLIAACQEHGCTDLLLGHQADDL 149
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +R + +SG GLAGM + + D++ L+RP+L FS+ +
Sbjct: 150 AETVWMRQNSSSGPEGLAGMGW---------ITVRPDIR-----LIRPMLGFSRQALRNT 195
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + +WV+DP+N+ R R+R
Sbjct: 196 LRQAHVEWVDDPSNQDQRAERVRLR 220
>gi|423461674|ref|ZP_17438470.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5X2-1]
gi|401135336|gb|EJQ42935.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5X2-1]
Length = 476
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|423490678|ref|ZP_17467360.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BtB2-4]
gi|423496418|ref|ZP_17473062.1| tRNA(Ile)-lysidine synthase [Bacillus cereus CER057]
gi|423496788|ref|ZP_17473405.1| tRNA(Ile)-lysidine synthase [Bacillus cereus CER074]
gi|401149148|gb|EJQ56627.1| tRNA(Ile)-lysidine synthase [Bacillus cereus CER057]
gi|401163969|gb|EJQ71309.1| tRNA(Ile)-lysidine synthase [Bacillus cereus CER074]
gi|402429023|gb|EJV61114.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BtB2-4]
Length = 476
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 19 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESY 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQVLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRSFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 207
>gi|423410711|ref|ZP_17387831.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3O-2]
gi|423433505|ref|ZP_17410509.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4O-1]
gi|401109942|gb|EJQ17859.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG3O-2]
gi|401111568|gb|EJQ19457.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4O-1]
Length = 476
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKNDSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++GI CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLRFVQGLCEELGIICETIRINVSQYQRQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLR 207
>gi|144897902|emb|CAM74766.1| cell cycle protein [Magnetospirillum gryphiswaldense MSR-1]
Length = 167
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 80/143 (55%), Gaps = 13/143 (9%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+P R+A+ VSGG DS+A +L A W E L+A+TVDH LR S
Sbjct: 19 FEPRPRLAVAVSGGADSLAATLLAAHW----------VHERRGTLVALTVDHRLRPNSTA 68
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA +V +++ GI I+ WL +P +Q AR RY L ++ C Q I LL+A
Sbjct: 69 EAVLVGQWLANHGIEHHIL--PWLGDKPVSD-IQGRARAARYGLLEQYCRQAGILHLLLA 125
Query: 199 HHADDQAELFILRLSRNSGVLGL 221
HH DDQAE F+LRL+R SGV GL
Sbjct: 126 HHRDDQAETFLLRLARGSGVDGL 148
>gi|229113738|ref|ZP_04243174.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3]
gi|228669735|gb|EEL25141.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3]
Length = 283
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS+AL + E ++ VDH R +ES E+ V
Sbjct: 29 IVVGVSGGPDSLALLYYLLEKR----------AEKQLEIVVAHVDHMFRGDESHEDLQFV 78
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+G+ CE +R + + + G + Q AAR+ RY +++ ++ + + HH D
Sbjct: 79 QDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGD 138
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++RL R S G AG+A + Y L+RPLL +K+++
Sbjct: 139 DQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGVTKEEIV 184
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
C N DP+N+ ++ RNR+R
Sbjct: 185 NYCNELNLIPRIDPSNKKEVYTRNRLR 211
>gi|423621417|ref|ZP_17597195.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD148]
gi|401263446|gb|EJR69571.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD148]
Length = 476
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKECSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNEINLIPRIDPSNKKEVYTRNRLR 207
>gi|423439756|ref|ZP_17416662.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4X2-1]
gi|423462828|ref|ZP_17439596.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6O-1]
gi|423532184|ref|ZP_17508602.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB2-9]
gi|402421799|gb|EJV54046.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG4X2-1]
gi|402422956|gb|EJV55177.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG6O-1]
gi|402465262|gb|EJV96944.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB2-9]
Length = 476
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKECSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNEINLIPRIDPSNKKEVYTRNRLR 207
>gi|423572794|ref|ZP_17548913.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-D12]
gi|401216718|gb|EJR23424.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MSX-D12]
Length = 476
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 28/214 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
LK I +GVSGGPDS+AL L T F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLLEKRATKQFE-----------IVVAHVDHMFRGDES 67
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVL 195
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 68 HEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYV 127
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 128 ALGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLG 173
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 174 VTKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|229015466|ref|ZP_04172466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273]
gi|228745824|gb|EEL95826.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273]
Length = 480
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK H I +GVSGGPDS+AL + A + ++ ++A VDH R ES
Sbjct: 23 LKKHSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGNESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V ++G+ CE +R + + + G + Q AAR+ RY + + ++ +
Sbjct: 73 EDLQFVQGICKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLR 211
>gi|229094785|ref|ZP_04225791.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29]
gi|228688653|gb|EEL42525.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29]
Length = 480
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 23 LKECSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVNYCNEINLIPRIDPSNKKEVYTRNRLR 211
>gi|423376662|ref|ZP_17353946.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1O-2]
gi|423548776|ref|ZP_17525134.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB5-5]
gi|401174307|gb|EJQ81518.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB5-5]
gi|401641301|gb|EJS59021.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG1O-2]
Length = 476
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKECSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNELNLIPRIDPSNKKEVYTRNRLR 207
>gi|351729463|ref|ZP_08947154.1| tRNA(Ile)-lysidine synthetase [Acidovorax radicis N35]
Length = 321
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 100/233 (42%), Gaps = 35/233 (15%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM P +A+G+SGG DS AL + A G AI V HGL+
Sbjct: 8 AMQAFAPALPLAVGLSGGADSTALLLACARRWPGQVR-------------AIHVHHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCI----Q 189
+ + D+G+ + R D R G E AAR RY+ F+ V + Q
Sbjct: 55 AADGFEQHCAALCQDLGVPLWVERPD---ARHAPGQSPEDAARQARYKAFEAVALASKAQ 111
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + IA HADDQAE +L LSR +GV GLA M + ++
Sbjct: 112 LAIKSIAIAQHADDQAETLLLALSRGAGVAGLAAMPAR--------------WERAGVVW 157
Query: 250 VRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
RPLL + D+ + + WVEDPTN + RNRIR L +F +
Sbjct: 158 YRPLLPVAAIDIRSWLRAQGQGWVEDPTNTDQRYTRNRIRAQLLPALEAAFPA 210
>gi|83954494|ref|ZP_00963205.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1]
gi|83840778|gb|EAP79949.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1]
Length = 419
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 104/229 (45%), Gaps = 27/229 (11%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + + VSGG DS+AL L N A L A TVDHGLR E+ EA
Sbjct: 17 PPPVLGVAVSGGGDSVALLHLL----------NDYARSRGIALRAATVDHGLRPEAAREA 66
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+V+ + +G+ + + W G G+LQ AR RYRL IG + I H
Sbjct: 67 AMVAAQCRALGVPHDTLM--WT-GWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHT 123
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
ADD AE F++RL R +GV GL+ M IF + H RPLL+ + D
Sbjct: 124 ADDLAETFVMRLGRRAGVDGLSAM---PAIFDRHGMRWH-----------RPLLNARRAD 169
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
+ WV+DP+N F R RIR +L L+ S A +S
Sbjct: 170 LRAHLTQRGVTWVDDPSNEDDSFARVRIRKALAVLTDLGVDSAALADVS 218
>gi|65317524|ref|ZP_00390483.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
cell cycle control [Bacillus anthracis str. A2012]
gi|386733931|ref|YP_006207112.1| tRNA(Ile)-lysidine synthase [Bacillus anthracis str. H9401]
gi|384383783|gb|AFH81444.1| tRNA(Ile)-lysidine synthase [Bacillus anthracis str. H9401]
Length = 480
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLR 211
>gi|349701040|ref|ZP_08902669.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter europaeus LMG 18494]
Length = 420
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 108/227 (47%), Gaps = 37/227 (16%)
Query: 70 FSRRMAMAGLKPHH--RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
F+ MA G P +A+ VSGG DSMAL +L W+ ++A+
Sbjct: 12 FATMMASLGPWPGQGVPVAVAVSGGADSMALAILARQWR--------------HDVMALV 57
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDHGLR ES+ EA R+S +GI ++ L G + + E AR MRY+ C
Sbjct: 58 VDHGLRAESRSEAVQTLARLSTLGIPGRLLA---LTGLARGPRMAERARRMRYQALFAAC 114
Query: 188 IQHQIGVL--LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+IG L L+AHHA DQAE ++R SG GLA MA ++ +
Sbjct: 115 --REIGALDLLVAHHAGDQAETVMMRRRAASGDDGLAAMAVATPVA-------------- 158
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ +VRPLL +K +Y + WVEDP+N R R R +L
Sbjct: 159 DVRIVRPLLGVAKSALYATVRAAGVAWVEDPSNHDLRTERARARQAL 205
>gi|30260254|ref|NP_842631.1| hypothetical protein BA_0062 [Bacillus anthracis str. Ames]
gi|47525316|ref|YP_016665.1| hypothetical protein GBAA_0062 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183097|ref|YP_026349.1| hypothetical protein BAS0062 [Bacillus anthracis str. Sterne]
gi|165872559|ref|ZP_02217191.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488]
gi|167635086|ref|ZP_02393403.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442]
gi|167641508|ref|ZP_02399756.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193]
gi|170688892|ref|ZP_02880094.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465]
gi|170707562|ref|ZP_02898015.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389]
gi|177655625|ref|ZP_02936988.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174]
gi|190569013|ref|ZP_03021914.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str.
Tsiankovskii-I]
gi|227812737|ref|YP_002812746.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684]
gi|229602718|ref|YP_002864715.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248]
gi|254682310|ref|ZP_05146171.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CNEVA-9066]
gi|254735465|ref|ZP_05193173.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Western
North America USA6153]
gi|254744633|ref|ZP_05202312.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Kruger B]
gi|254756338|ref|ZP_05208367.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Vollum]
gi|254762394|ref|ZP_05214236.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Australia
94]
gi|421510680|ref|ZP_15957569.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. UR-1]
gi|61216616|sp|Q81VX7.1|TILS_BACAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|30253575|gb|AAP24117.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Ames]
gi|47500464|gb|AAT29140.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177024|gb|AAT52400.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164711687|gb|EDR17232.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488]
gi|167510493|gb|EDR85891.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193]
gi|167529560|gb|EDR92310.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442]
gi|170127558|gb|EDS96432.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389]
gi|170667116|gb|EDT17877.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465]
gi|172080036|gb|EDT65135.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174]
gi|190559937|gb|EDV13921.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str.
Tsiankovskii-I]
gi|227005702|gb|ACP15445.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684]
gi|229267126|gb|ACQ48763.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248]
gi|401819301|gb|EJT18482.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. UR-1]
Length = 476
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLR 207
>gi|118475834|ref|YP_892985.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam]
gi|228931566|ref|ZP_04094473.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228943870|ref|ZP_04106256.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089195|ref|ZP_04220477.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42]
gi|229182458|ref|ZP_04309710.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1]
gi|118415059|gb|ABK83478.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam]
gi|228601038|gb|EEK58606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1]
gi|228694158|gb|EEL47839.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42]
gi|228815827|gb|EEM62062.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228828118|gb|EEM73845.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 480
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLR 211
>gi|228912803|ref|ZP_04076451.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228846863|gb|EEM91867.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 480
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLR 211
>gi|430751794|ref|YP_007214702.1| tRNA(Ile)-lysidine synthetase [Thermobacillus composti KWC4]
gi|430735759|gb|AGA59704.1| tRNA(Ile)-lysidine synthetase [Thermobacillus composti KWC4]
Length = 480
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 26/215 (12%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKE 138
+P I VSGGPDS AL L +GE G L A V+HG R EES
Sbjct: 18 QPGDTILAAVSGGPDSTALLHLLR-------RLSGECGFR---LAAAHVNHGFRGEESAR 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA V ++G+ + V D + G + Q AAR+ RY + + + +
Sbjct: 68 EAEFVRRLCEELGVPLDAVEYDLPSYIEETGMNAQAAAREKRYAFLRLAAARRGASRIAL 127
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHHADDQAE ++RL R +G G+AGM + ++ L+RPLL S
Sbjct: 128 AHHADDQAETVLMRLLRGAGTSGIAGMPMKR--------------REGNVELIRPLLRIS 173
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
K ++ + C + ED +NR ++ RN +R+ +
Sbjct: 174 KLELLQYCAREGLVYCEDSSNRKTVYFRNAVRLEI 208
>gi|330718517|ref|ZP_08313117.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc fallax KCTC 3537]
Length = 442
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 138/290 (47%), Gaps = 54/290 (18%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+ L L A KT EFI V++ LR +S +A
Sbjct: 17 KVIVAVSGGVDSVVL--LDALIKTQP------QVEFI----VAHVNYHLRPQSDNDA--- 61
Query: 144 SHRVSDMGIRCEIV--RCDW--LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
H V+++ + +V + DW +D QG ++EAARD RY F+++ ++ +L+AH
Sbjct: 62 -HFVAEIAKKYHVVLRKVDWQGID----QGSVEEAARDFRYCFFEELANEYATNTILVAH 116
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
HA+DQAE +L+L R + L+GM + Q+ + ++ +VRPLL FSK
Sbjct: 117 HANDQAETILLKLVRGGKLSQLSGMQPTRQV-------------SKTVQIVRPLLPFSKQ 163
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFV-RNRIRMSLGDLSSCSFKSELQAVISACRRTRSYV 318
+ Q +W ED TN + RN IR+ + L + + + ++
Sbjct: 164 RIKLYAQQHRLEWCEDSTNADSAYTPRNLIRLEI-----------LPRLTTINHKAIEHI 212
Query: 319 EHVCSNLINEAVTVMDQGYAVIDLEILNPSK----IEDIFLSKFLALVLQ 364
S ++ + + Q +D +I+ K I +I+LS L++ LQ
Sbjct: 213 NQTASQIMQQEQMITMQATQYLD-DIMQSQKSWGDIPEIWLSAVLSIWLQ 261
>gi|37524690|ref|NP_928034.1| tRNA(Ile)-lysidine synthetase [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|61216585|sp|Q7N8N0.1|TILS_PHOLL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|36784115|emb|CAE12984.1| Putative cell cycle protein MesJ [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 442
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 51/284 (17%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L + +I +G SGG DS L L W+ NQ+ + + L AI + HGL ++ +
Sbjct: 16 LGEYKKILVGFSGGLDSSVLLHLLVNWR----NQHNQKIQ----LRAIHIHHGLNLKADQ 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDW----------LDGRPKQGHLQEAARDMRYRLFQKVCI 188
+ H C+++ DW +D R Q ++ AARD RY++F+
Sbjct: 68 ---WIEH--------CQLICDDWQVEFHSARVTIDAR--QKGIEAAARDARYQVFKSELQ 114
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ + VL+ A H DDQAE F+L L R SG GLA M S +F+ L
Sbjct: 115 KDE--VLVTAQHLDDQAETFLLALKRGSGPAGLASMP-SIAVFAD-------------TL 158
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQ 305
L+RPLLD+S++++ K +W+ED +N+ + RN +R M L + F
Sbjct: 159 LLRPLLDYSRNELEKYASKHRLNWIEDDSNQDDRYDRNFLRLHIMPLLNQRWSHFPKAAA 218
Query: 306 AVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK 349
S C ++ + + + E +T D ++ L + + +K
Sbjct: 219 RSASLCGEQEQLLDELLNESLKELIT-QDGALGIVSLAVCSEAK 261
>gi|49476703|ref|YP_034416.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|196036405|ref|ZP_03103802.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W]
gi|196041776|ref|ZP_03109066.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99]
gi|196047393|ref|ZP_03114606.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108]
gi|218901265|ref|YP_002449099.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820]
gi|225862116|ref|YP_002747494.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102]
gi|301051801|ref|YP_003790012.1| cell cycle protein [Bacillus cereus biovar anthracis str. CI]
gi|376264091|ref|YP_005116803.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus F837/76]
gi|423554003|ref|ZP_17530329.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ISP3191]
gi|61216513|sp|Q6HPV4.1|TILS_BACHK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|49328259|gb|AAT58905.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|195991035|gb|EDX55006.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W]
gi|196021795|gb|EDX60489.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108]
gi|196027396|gb|EDX66013.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99]
gi|218539357|gb|ACK91755.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820]
gi|225790908|gb|ACO31125.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102]
gi|300373970|gb|ADK02874.1| cell cycle protein [Bacillus cereus biovar anthracis str. CI]
gi|364509891|gb|AEW53290.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus F837/76]
gi|401182084|gb|EJQ89226.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ISP3191]
Length = 476
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLR 207
>gi|423450083|ref|ZP_17426962.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5O-1]
gi|423542545|ref|ZP_17518935.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB4-10]
gi|401127090|gb|EJQ34820.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG5O-1]
gi|401168341|gb|EJQ75606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus HuB4-10]
Length = 476
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A + ++ ++A VDH R +ES
Sbjct: 19 LKECSTIVVGVSGGPDSLALLY---------YLLEKRAEKQLEIVVA-HVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARCVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNEINLIPRIDPSNKKEVYTRNRLR 207
>gi|169830304|ref|YP_001716286.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
MP104C]
gi|169637148|gb|ACA58654.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
MP104C]
Length = 470
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 114/265 (43%), Gaps = 40/265 (15%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV---DHGLR-E 134
L+P + +GVSGGPDS+AL + G + + G+ +ITV +H LR
Sbjct: 17 LEPGMGVLVGVSGGPDSVALLDVLYGLRA------------VLGI-SITVAHLNHRLRGA 63
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIG 193
E++ +A V G+ C + CD R + +Q AAR++RY F + +
Sbjct: 64 EAEADARYVRKLAEKFGLPCIVEECDVPTFRKAERLSIQTAARELRYEFFARAARETGAR 123
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253
+ + HHADDQAE + R +G GLAG+A +F +RPL
Sbjct: 124 RVALGHHADDQAETILHHFLRGTGPAGLAGIAPVRGLF------------------IRPL 165
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI----S 309
L + ++ C+ D DP+N P++ RNR+R L L + L +
Sbjct: 166 LGIRRREIEAYCRARGLDPRLDPSNLDPVYTRNRLRAELLPLLETEYNPNLVTALLRLGE 225
Query: 310 ACRRTRSYVEHVCSNLINEAVTVMD 334
CR Y+E + + D
Sbjct: 226 ICRAENDYMEEQTETIFRRSAAPTD 250
>gi|229170914|ref|ZP_04298517.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3]
gi|228612580|gb|EEK69799.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3]
Length = 480
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCRGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 211
>gi|423608112|ref|ZP_17584004.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD102]
gi|401238609|gb|EJR45045.1| tRNA(Ile)-lysidine synthase [Bacillus cereus VD102]
Length = 476
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|228983319|ref|ZP_04143533.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229194454|ref|ZP_04321258.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293]
gi|228589044|gb|EEK47058.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293]
gi|228776433|gb|EEM24785.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 480
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 211
>gi|229153842|ref|ZP_04281973.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342]
gi|228629646|gb|EEK86342.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342]
Length = 480
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 211
>gi|396462610|ref|XP_003835916.1| hypothetical protein LEMA_P052570.1 [Leptosphaeria maculans JN3]
gi|312212468|emb|CBX92551.1| hypothetical protein LEMA_P052570.1 [Leptosphaeria maculans JN3]
Length = 758
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ +SGG DSMAL L + + + + A VDH R S EEA V+
Sbjct: 105 LGFAISGGVDSMALMTL--------YYRARKRRTGLPPAHAFIVDHNARPGSAEEAEWVA 156
Query: 145 HRV-SDMGIRCEIVRCDWLDGRPKQGH--LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
++ + + ++R +W H + AR +RY+ + C H I LL+AHHA
Sbjct: 157 EQLRQKLDVPSTVLRLEWPSDLDPSDHRRFETEARRLRYQALGESCRSHNISALLVAHHA 216
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQI------------FSSYAYSCHDD-----LKN 244
DDQAE ++RL+ N GL G+ S I S Y D+ ++
Sbjct: 217 DDQAETVLMRLANNRLRSGLQGIQGSEWIPECEGIYGLYHSGSPYTKIRPDNPSSLVVEQ 276
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR-SPLFVRNRIR 289
I ++RPLL F K + C+ WVED TN+ L RN IR
Sbjct: 277 GGIQILRPLLGFEKARLVATCKKACMPWVEDKTNQIRTLTARNAIR 322
>gi|384049312|ref|YP_005497329.1| tRNA(Ile)-lysidine synthase MesJ [Bacillus megaterium WSH-002]
gi|345447003|gb|AEN92020.1| tRNA(Ile)-lysidine synthase MesJ [Bacillus megaterium WSH-002]
Length = 458
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 120/263 (45%), Gaps = 31/263 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +G+SGGPDS+AL K E ++A VDH R +ES+++ V
Sbjct: 21 VIVGISGGPDSLALLHFLWSLK--------EQKSLT--IIAAHVDHMFRGKESQQDMEYV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + I+CE + D + K+ L Q AAR+ RY F V +H+ +L + HH
Sbjct: 71 QNYCKQLNIKCEAKQID-VTAYQKERKLSSQVAARECRYAFFTHVMKKHKANLLALGHHG 129
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++R+ R S + G AGM Q YA ++RP L +K+++
Sbjct: 130 DDQIETMLMRMVRGSTMNGYAGM----QPKRPYADG----------FIIRPFLSVTKEEI 175
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYV 318
+ C+ DP+N + RNR R + + + + Q ++Y+
Sbjct: 176 NRYCKLHGLTPRIDPSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYL 235
Query: 319 EHVCSNLINEAVTVMDQGYAVID 341
E + ++++N+ + Q +ID
Sbjct: 236 EELTTDVMNKVMRKKLQNEILID 258
>gi|47570187|ref|ZP_00240841.1| cell cycle protein mesJ [Bacillus cereus G9241]
gi|47553131|gb|EAL11528.1| cell cycle protein mesJ [Bacillus cereus G9241]
Length = 476
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYVFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|254724204|ref|ZP_05185989.1| cell cycle protein [Bacillus anthracis str. A1055]
Length = 476
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQGLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLR 207
>gi|167747340|ref|ZP_02419467.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662]
gi|167653318|gb|EDR97447.1| tRNA(Ile)-lysidine synthetase [Anaerostipes caccae DSM 14662]
Length = 437
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 43/213 (20%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+GVSGG DS+ L +L K E+ L A+ ++HG+R E+ ++ V
Sbjct: 20 IAVGVSGGADSVCLLLLLCELKQ----------EYDLELCAVHINHGIRREAFKDQEFVE 69
Query: 145 HRVSDMGIRCEIVRCDWLD--------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ C + W+ + L+EA R +RYR F+KV H G +
Sbjct: 70 NL-------CRRRKVPWITFSEDVKGTAEKQSMSLEEAGRMIRYRCFRKVLDMHGGGKIA 122
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHH +DQAE + R+SR +G+ GL GM + D ++RPLL
Sbjct: 123 VAHHQNDQAETMLYRMSRGTGIQGLKGME-----------AVRAD-------VIRPLLCL 164
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
K+++ + ++DW+ED +N F RN+IR
Sbjct: 165 KKEEILAYLKEKDQDWMEDASNEDNTFARNKIR 197
>gi|392869771|gb|EAS28294.2| tRNA(Ile)-lysidine synthetase [Coccidioides immitis RS]
Length = 815
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 119/291 (40%), Gaps = 56/291 (19%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IAL VSGGPDSMAL L G + FI VDH RE+S +EA V+
Sbjct: 43 IALAVSGGPDSMALAHLCRRLIVEGHIPDLNVKAFI-------VDHKAREKSTDEALKVA 95
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHL---QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ MG++ +++ W +G L + AR +RY+ C+ I L + HH
Sbjct: 96 GWIKSMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHR 155
Query: 202 DDQAELFILRLSRNSGVLGLA---------------GMAFSSQIFSSYAYSC-------- 238
DD E +LRL++ G GLA G++ S I S A S
Sbjct: 156 DDNVETALLRLAQGHGRFGLAGFDSVSPIPECHSLWGVSQSGDITSIEAISADRTPRMAP 215
Query: 239 -HDDLKNHS-------------------ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278
+L N+ + + RP F K + C+ +V DPTN
Sbjct: 216 IKPNLMNNEGARAPLPQPDSSLYTATGGVYIFRPFRSFPKARLEATCRVARVPFVIDPTN 275
Query: 279 RS-PLFVRNRIR--MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLI 326
L VRN +R +S GDL + A IS +R + ++ + + +
Sbjct: 276 EDHTLTVRNTVRKLLSSGDLPRALQSPSILAFISKNQRAKERLQDLTDSFL 326
>gi|300119157|ref|ZP_07056858.1| cell cycle protein [Bacillus cereus SJ1]
gi|298723479|gb|EFI64220.1| cell cycle protein [Bacillus cereus SJ1]
Length = 279
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLLEKRA--------AKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLR 207
>gi|421849007|ref|ZP_16281992.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus NBRC
101655]
gi|371460276|dbj|GAB27195.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus NBRC
101655]
Length = 430
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 31/208 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DS+ L L + W+ LLA+ VDHGLR +S +EA
Sbjct: 42 IAMAVSGGGDSLCLAWLASFWRKN--------------LLALVVDHGLRPKSGQEAQQTI 87
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
R+ M I +++ L K + AR+ RY C ++ LL+ H ADD
Sbjct: 88 ARLRAMNIPAQLLV---LTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADDL 144
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +R + +SG GLAGM + + D++ L+RPLL FS+ +
Sbjct: 145 AETVWMRQNSSSGPEGLAGMGW---------ITVRPDIR-----LIRPLLGFSRAALRNT 190
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + +WV+DP+N+ R R+R L
Sbjct: 191 LRQAHLEWVDDPSNQDQRAERVRLRFLL 218
>gi|282856665|ref|ZP_06265933.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455]
gi|282585514|gb|EFB90814.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455]
Length = 434
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 51/291 (17%)
Query: 65 KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL 124
++R RR G P + LGVSGG DSM+L F++ E + L+
Sbjct: 9 RFRGVMERR-GWLGQTP---VLLGVSGGSDSMSLLC--------AFSRLYEPSQ----LV 52
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP-----KQGHLQEAA-RDM 178
+ +DHGLR S + V R +++G+RC I R RP ++G +EAA R +
Sbjct: 53 VLHMDHGLRGASSRDGEFVKKRCAELGVRCVIER------RPVSALSRKGESEEAAGRRL 106
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY L+++ + ++ + H DD AE ++ L+R G+ G+AGM I+
Sbjct: 107 RYELYEETAQRFGCRLVALGHTRDDLAENTLMNLARGCGLWGVAGMPEQRDIY------- 159
Query: 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSC 298
+RPLL F + ++ + WV+D TN ++ RNR+R + L +
Sbjct: 160 -----------IRPLLSFRRQELRDFLRAQGWSWVDDETNALNIYQRNRVRNEVMPLLAR 208
Query: 299 SFKS----ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 345
S L ++ + R E S L E V++ +G+ + L L
Sbjct: 209 EVNSGVVEHLASLAEEAQLWRKMQEEQSSALCRE-VSLPQRGWPCLSLSKL 258
>gi|384177969|ref|YP_005563731.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324324053|gb|ADY19313.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 476
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|228995454|ref|ZP_04155124.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17]
gi|228764315|gb|EEM13192.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17]
Length = 480
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L+ H I +GVSGGPDS+AL + E + ++ VDH R +ES
Sbjct: 23 LEEHSTIVVGVSGGPDSLALLYYLL--------EKREEKKL--KIVVAHVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A S Y ++RPLL
Sbjct: 133 LGHHGDDQMETILMRLVRGSTPKGYAGIAVKRPFHSGY--------------VIRPLLAV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C+ DP+N ++ RNR+R
Sbjct: 179 TKEEINAYCKRLGVTPRMDPSNEKEVYTRNRLR 211
>gi|228925317|ref|ZP_04088414.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228834364|gb|EEM79904.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 480
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKVLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 179 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLR 211
>gi|227823305|ref|YP_002827277.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
gi|227342306|gb|ACP26524.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
Length = 445
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 104/226 (46%), Gaps = 27/226 (11%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDGLLAIT 127
A +RR + +KP RI + +SGG DS L V L A T F L+A T
Sbjct: 7 AAARRFLRSFIKPG-RILVAISGGSDSKGLLVALHAALGTADFEGFS--------LVACT 57
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDH LR +S +EA V + +GI ++ C W +P+ G +Q AAR RY + +
Sbjct: 58 VDHALRSDSADEAAAVGAFCAGLGIPHQV--CRWPGDKPRAG-IQAAARLKRYDMLAEAA 114
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVL-GLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + H DDQ E +R +R+ G G AGMA + L
Sbjct: 115 AVFRADCIATGHTLDDQNETIAMRGARDQGQGHGSAGMAAAM-------------LYGRR 161
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++RP L + D+ G W +DP+N +PLF R R+R SL
Sbjct: 162 TWVLRPFLGLRRADIRAYLGGRGIGWFDDPSNENPLFERARVRASL 207
>gi|90962327|ref|YP_536243.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118]
gi|90821521|gb|ABE00160.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118]
Length = 452
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 27/207 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + I +DH LRE+SKEE
Sbjct: 25 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINIAYIDHQLREQSKEETKF 73
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 74 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F+++L R + L + S +IF +D + +VRP+L F+K ++Y
Sbjct: 132 DQAETFLMKLIRGGNIQQLQAIQ-SVRIF-------REDYQ-----IVRPMLIFNKKEIY 178
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + ED TN+S + RNR+R
Sbjct: 179 DYAKQLGIKYYEDETNKSDDYQRNRLR 205
>gi|329122059|ref|ZP_08250667.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
DSM 19965]
gi|327466866|gb|EGF12382.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
DSM 19965]
Length = 466
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 31/211 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
+I L VSGGPDS+ L + K+ GF+ + T+DH LR+ES EE
Sbjct: 8 KILLAVSGGPDSLGLLLAMNELKSSEGFS-----------IGCCTIDHHLRKESAEEVIY 56
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V+ ++GI C+++ + + + + + AAR++RY +++ +++ + +AHH+
Sbjct: 57 VNKICEELGIDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHS 116
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE I RL R G+ GL+GM + F +RP L +K ++
Sbjct: 117 DDQAETVIHRLIRGGGMTGLSGMLPKREYF------------------IRPFLAVTKKEI 158
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D TN P RN+IR+ L
Sbjct: 159 QAYIDEFPYIPAHDKTNDIPDVTRNKIRLQL 189
>gi|229003073|ref|ZP_04160926.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4]
gi|228758176|gb|EEM07368.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4]
Length = 283
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L+ H I +GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 23 LEEHSTIVVGVSGGPDSLALLYYLLEKRE----------EKKLKIVVAHVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A S Y ++RPLL
Sbjct: 133 LGHHGDDQMETILMRLVRGSTPKGYAGIAVKRPFHSGY--------------VIRPLLAV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C+ DP+N ++ RNR+R
Sbjct: 179 TKEEINAYCKRLGVTPRMDPSNEKEVYTRNRLR 211
>gi|228989271|ref|ZP_04149264.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442]
gi|228770481|gb|EEM19052.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442]
Length = 480
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L+ H I +GVSGGPDS+AL + E + ++ VDH R +ES
Sbjct: 23 LEKHSTIVVGVSGGPDSLALLYYLL--------EKREEKKL--KIVVAHVDHMFRGDESY 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A S Y ++RPLL
Sbjct: 133 LGHHGDDQMETILMRLVRGSTPKGYAGIAVKRPFHSGY--------------VIRPLLAV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C+ DP+N ++ RNR+R
Sbjct: 179 TKEEINAYCKRLGVTPRMDPSNEKEVYTRNRLR 211
>gi|229119726|ref|ZP_04248988.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201]
gi|228663751|gb|EEL19329.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201]
Length = 480
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 23 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 73 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 132
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 178
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
K+++ C DP+N+ ++ RNR+R
Sbjct: 179 KKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLR 211
>gi|417809769|ref|ZP_12456450.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius GJ-24]
gi|335350693|gb|EGM52189.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius GJ-24]
Length = 452
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 45/296 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + + +DH LRE+SKEE
Sbjct: 25 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINVAYIDHQLREQSKEETKF 73
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 74 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F+++L R + L + S +IF +D + +VRP+L F+K ++Y
Sbjct: 132 DQAETFLMKLIRGGNIQQLQAIQ-SVRIF-------REDYQ-----IVRPMLIFNKKEIY 178
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 322
+ + ED TN+S + RNR+R + + L+ V+ Y + +
Sbjct: 179 DYAKQLGIKYYEDETNKSDDYQRNRLRHHIIPVLKAENPEFLKHVL-------EYTQQLT 231
Query: 323 SNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLA---LVLQFICQRQRPVRG 375
+NL +A+ V D+++ SK E + +KF+ L + + +R V+G
Sbjct: 232 NNL--QAIQ------EVADVKLNKISKEETLDYNKFVKESPLWQRILLERYLEVKG 279
>gi|346991830|ref|ZP_08859902.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. TW15]
Length = 417
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 144/340 (42%), Gaps = 42/340 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGG DS AL L A Q E ++ L A TVDHGLR ES EA
Sbjct: 23 RLGVAVSGGSDSTALMRLLAD-----IAQQ----EQLE-LYASTVDHGLRPESASEALAA 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ GI EI++ G + G+LQ+ AR RYRL + + + H ADD
Sbjct: 73 AALAQRWGIPHEILKWQ---GWDRAGNLQDQARRARYRLLGAWAKAKGLQAIALGHTADD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE ++RL+R +GV GL+ M+ S K I L+RPLL +++ +
Sbjct: 130 QAETVLMRLARAAGVSGLSAMSGSR--------------KEGEIALLRPLLTTTRERLRD 175
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHVC 322
+ W++DP+N+ F R + R L L +E L V + R +
Sbjct: 176 YLTAQDISWIDDPSNQDHRFDRIKARQVLSGLDQIGITAENLSRVAENMAQAREALARYT 235
Query: 323 SNLINEAVTVMDQGYAVI--DLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKL 380
+ V D + D E L E+I +A VL +I P R +
Sbjct: 236 QESAVRCIQVSDGDLCLDRGDFETLP----EEIRRRLVIASVL-WIAGAGYPPRHNAVDQ 290
Query: 381 LLHYIRTFPCKTSLTAAGCYLCPTPGSRGTKALVCSSIDG 420
++ I + + T GC L P G K +C ++
Sbjct: 291 VMDAISS---GQTTTLGGCILVP----EGKKTWICRELNA 323
>gi|423410220|ref|ZP_17387367.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-3]
gi|401649029|gb|EJS66619.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-3]
Length = 476
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKERSTIVAGVSGGPDSLALLYYLLEKRV----------EKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKRLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNVIPRIDPSNKKEVYTRNRLR 207
>gi|393768431|ref|ZP_10356971.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. GXF4]
gi|392726257|gb|EIZ83582.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. GXF4]
Length = 336
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 88/207 (42%), Gaps = 30/207 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS AL + A G Q TVDHGLR +S EA V
Sbjct: 24 VLLAVSGGPDSSAL--MHAAAALGASVQ------------VATVDHGLRPDSGSEAEGVG 69
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+ ++ W +P G LQ+AAR RYRL G++L H DDQ
Sbjct: 70 RAARALGLPHAVL--TWAGPKPGTG-LQDAARAARYRLLAAHAEAVGAGLVLTGHTQDDQ 126
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RL+ SG GLAGM + I L RP L K +
Sbjct: 127 AETVLMRLAAGSGPAGLAGMRTERPLAP-------------GITLGRPFLALPKATLTAW 173
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMS 291
C V DP N P F R R+R +
Sbjct: 174 CVARGIPHVRDPANADPRFARARLRAT 200
>gi|423399528|ref|ZP_17376724.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-1]
gi|401643584|gb|EJS61280.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BAG2X1-1]
Length = 476
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I GVSGGPDS+AL + E ++ VDH R +ES
Sbjct: 19 LKERSTIVAGVSGGPDSLALLYYLLEKRV----------EKQLKIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V +G+ CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKRLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C N DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLNVIPRIDPSNKKEVYTRNRLR 207
>gi|407979076|ref|ZP_11159898.1| tRNA(Ile)-lysidine synthase [Bacillus sp. HYC-10]
gi|407414292|gb|EKF35945.1| tRNA(Ile)-lysidine synthase [Bacillus sp. HYC-10]
Length = 467
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDSM L + G F L+A VDH R EES + V
Sbjct: 20 VIVGVSGGPDSMLLLHELNKRQKGSFQ-----------LIAAHVDHMFRGEESFADLAFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ I E R + K+ L Q AAR+ RY F+++ Q+ + +AHH
Sbjct: 69 EAYCKEHEILFESARIQ-VTQYAKENRLNKQAAARECRYAFFRQLMEQYNAQFIALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL+R + +GLAG+ + L+RPL+ +SKDD+
Sbjct: 128 DDQVETMMMRLTRGTVGIGLAGIQAKRPFQEGW--------------LIRPLIGYSKDDV 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
C+ + +V D +N + ++RNRIR + + + Q V Y+
Sbjct: 174 LTACEKEHVPYVIDQSNHTDDYLRNRIRRHILPVLKEEAPHVHESFQFVSDMLTEDEHYL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QALTKKQMNQVIT 246
>gi|310639528|ref|YP_003944286.1| tRNA(ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
gi|386038742|ref|YP_005957696.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa M1]
gi|309244478|gb|ADO54045.1| tRNA(Ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
gi|343094780|emb|CCC82989.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa M1]
Length = 482
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 96/214 (44%), Gaps = 25/214 (11%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVIHMPLQLVCAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + + + E++R D + G QEAAR++RY + + + +A
Sbjct: 76 AEEVHNIARKLKLPFEMIRVDAPAYMKESGKGPQEAARELRYSFLHDTATKWKAQHIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQAE +L L R SG GLAGM + ++ L+RPLL K
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLARN--------------EKNVQLIRPLLRMYK 181
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D+ + C +V D TN S + RN IRM +
Sbjct: 182 ADLIEYCNFHGFSYVTDSTNLSSKYRRNAIRMDV 215
>gi|417787486|ref|ZP_12435169.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius NIAS840]
gi|418961010|ref|ZP_13512897.1| tRNA(Ile)-lysidine synthase [Lactobacillus salivarius SMXD51]
gi|334307663|gb|EGL98649.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius NIAS840]
gi|380344677|gb|EIA33023.1| tRNA(Ile)-lysidine synthase [Lactobacillus salivarius SMXD51]
Length = 450
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 27/207 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + + +DH LRE+SKEE
Sbjct: 23 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINVAYIDHQLREQSKEETKF 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 72 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 129
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F+++L R + L + S +IF +VRP+L F+K ++Y
Sbjct: 130 DQAETFLMKLIRGGNIQQLQAIQ-SVRIFRE------------DYQIVRPMLIFNKKEIY 176
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + ED TN+S + RNR+R
Sbjct: 177 DYAKQLGIKYYEDETNKSDDYQRNRLR 203
>gi|323701590|ref|ZP_08113262.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM
574]
gi|323533363|gb|EGB23230.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM
574]
Length = 475
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 33/218 (15%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
++P + +GVSGGPDS+AL + + E L ++H R EE++
Sbjct: 17 VQPGDLVVVGVSGGPDSVALLHVLYCLRD----------ELGISLHVAHLNHMFRGEEAE 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
E+A+ V + +GI C + D + ++ HL + AAR+ RYR F+ V L
Sbjct: 67 EDASFVQDLAAKLGIPCTVEERD-VPAYARKNHLSSEVAAREARYRFFRDVLQATGGSKL 125
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+AHHADDQAEL ++ + R +G+ GL+GM Q++ +RP+L
Sbjct: 126 ALAHHADDQAELVLMNILRGTGLKGLSGMWPVRDQVY------------------IRPML 167
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + D+ + C N + D +N +++RNRIR L
Sbjct: 168 EVRRKDIEQYCHDHNLSFRIDSSNLKNIYLRNRIRQQL 205
>gi|398309152|ref|ZP_10512626.1| tRNAile lysidine synthetase [Bacillus mojavensis RO-H-1]
Length = 470
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 114/253 (45%), Gaps = 32/253 (12%)
Query: 85 IALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
I +GVSGGPDSMAL VL A + G + N ++A VDH R +S+E+
Sbjct: 20 IIVGVSGGPDSMALLHVLHALY---GRSAN---------VIAAHVDHRFRGAQSEEDMRF 67
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V I+CE + + K G + Q AARD RY+ ++V +HQ L +AHH
Sbjct: 68 VQAYCEAEQIKCETAQINVTAYAEKNGLNKQAAARDCRYQFLKEVMSKHQADYLALAHHG 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL++ + GLAGM + + ++RP L +K+++
Sbjct: 128 DDQVETMLMRLAKGALGAGLAGMQPVRRFETGR--------------IIRPFLAITKEEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYV 318
C + D +N + RNR R ++ S Q V A ++
Sbjct: 174 LHYCHENALSYRTDESNAKDDYTRNRFRKAVLPFLKQESPDVHKRFQKVSEALTEDEQFL 233
Query: 319 EHVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 234 QSLTKEEMNKVIT 246
>gi|313891663|ref|ZP_07825270.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
345-E]
gi|313119941|gb|EFR43126.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
345-E]
Length = 484
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 31/211 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWK-TGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
+I L VSGGPDS+ L + K + GF + T+DH LR+ES EE
Sbjct: 26 KILLAVSGGPDSLGLLLAMNELKRSEGF-----------SIGCCTIDHHLRKESAEEVIY 74
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V+ ++GI C+++ + + + + + AAR++RY +++ +++ + +AHH+
Sbjct: 75 VNKICEELGIDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHS 134
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE I RL R G+ GL+GM + F +RP L +K ++
Sbjct: 135 DDQAETVIHRLIRGGGMTGLSGMLPKREYF------------------IRPFLAVTKKEI 176
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D TN P RN+IR+ L
Sbjct: 177 QAYIDEFPYIPAHDKTNDIPDVTRNKIRLQL 207
>gi|254440828|ref|ZP_05054321.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307]
gi|198250906|gb|EDY75221.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307]
Length = 430
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 153/343 (44%), Gaps = 41/343 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I + VSGG DSMAL + W N G E A+TVDHGLR E+ +EA +V
Sbjct: 32 KIGVAVSGGGDSMALLHMCIWWA----NLVGVTVE------AVTVDHGLRAEAADEAAVV 81
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ D G+ ++ +W DG +G++Q AAR+ RY L I +++ H ADD
Sbjct: 82 AAFCKDQGVSHSVL--NW-DGALAEGNVQAAAREARYALMAGWAKSRGIAHMMLGHTADD 138
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
AE F++RL+R SGV GLA M + RPL + + +
Sbjct: 139 IAETFLMRLARTSGVDGLAAMDAR--------------FDRDGVKWARPLWEQPRAQLRN 184
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK-SELQAVISACRRTRSYVEHVC 322
+ + WVEDP+N R + R L L+ L++ + RS ++
Sbjct: 185 YLRRHDVGWVEDPSNEDLSQTRPKARKILNALAPLGIDVGTLKSTAAFLSSARSALQCWA 244
Query: 323 SNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLAL-VLQFICQRQRPVRGSTSKLL 381
++ VT + G +I P E + + L L + +I P R K+
Sbjct: 245 ADEARRVVT-FEHGDVIIPTRSCPPVHTE---IERRLQLAAIGYINGEGYPPR----KMA 296
Query: 382 LHYIRTFPCKTSL-TAAGCYLCPTPGS-RGTKALVCSSIDGPL 422
L+Y+ K T AGC++ G R ++ L ++++GP+
Sbjct: 297 LNYLDVALLKQDRHTVAGCFVTKVDGGLRYSREL--NAVEGPI 337
>gi|330470517|ref|YP_004408260.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032]
gi|328813488|gb|AEB47660.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032]
Length = 329
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 18/168 (10%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
+TVDHGL+ S E A V+ G+ E+VR + + GRP G + AAR+ RY+
Sbjct: 59 VTVDHGLQTGSAERAEAVARWAEQAGLSPVEVVRVE-VAGRP--GGPEAAAREARYQALV 115
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
+ +H+ LL H DDQAE +L L+R +G GLAGM DL
Sbjct: 116 EAAGRHRAAALLTGHTRDDQAETVLLALARGAGPRGLAGM------------PVRRDLGG 163
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ LVRPLL+ S++ C +DP N P + R+R+R L
Sbjct: 164 --VPLVRPLLEISREQTRAACAALRLTPWQDPHNLDPAYARSRVRAQL 209
>gi|303314295|ref|XP_003067156.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240106824|gb|EER25011.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
gi|320037424|gb|EFW19361.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 815
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 119/291 (40%), Gaps = 56/291 (19%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IAL VSGGPDSMAL L G + FI VDH RE+S +EA V+
Sbjct: 43 IALAVSGGPDSMALAHLCRRLIVEGHIPDLNVKAFI-------VDHKAREKSTDEALKVA 95
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHL---QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ MG++ +++ W +G L + AR +RY+ C+ I L + HH
Sbjct: 96 GWIKSMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHR 155
Query: 202 DDQAELFILRLSRNSGVLGLA---------------GMAFSSQIFSSYAYSC-------- 238
DD E +LRL++ G GLA G++ S I S A S
Sbjct: 156 DDNVETALLRLAQGHGRFGLAGFDSVSPIPECHSLWGVSQSGDITSIEAISADRTPRMAP 215
Query: 239 -HDDLKNH-------------------SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278
+L N+ + + RP F K + C+ +V DPTN
Sbjct: 216 IKPNLMNNGGDRAPLPQPDSSLYTATGGVYIFRPFRSFPKARLEATCRVARVPFVIDPTN 275
Query: 279 RS-PLFVRNRIR--MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLI 326
L +RN +R +S GDL + A IS +R + ++ + + +
Sbjct: 276 EDHTLTIRNTVRKLLSSGDLPRALQSPSILAFISKNQRAKERLQDLTDSFL 326
>gi|301300317|ref|ZP_07206524.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852090|gb|EFK79767.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 452
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 27/207 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + + +DH LRE+SKEE
Sbjct: 25 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINVAYIDHQLREQSKEETKF 73
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 74 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F+++L R + L + S +IF +D + +VRP+L F+K ++Y
Sbjct: 132 DQAETFLMKLIRGGNIQQLQAIQ-SVRIF-------REDYQ-----IVRPMLIFNKKEIY 178
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + ED TN+S + RNR+R
Sbjct: 179 DYAKQLGIKYYEDETNKSDDYQRNRLR 205
>gi|385840857|ref|YP_005864181.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius CECT
5713]
gi|300214978|gb|ADJ79394.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius CECT
5713]
Length = 456
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 27/207 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANI 142
++ L VS G DSM L +G + + +D + + +DH LRE+SKEE
Sbjct: 25 KVLLAVSTGVDSMVLL-------SGML----KLSKVLDVEINVAYIDHQLREQSKEETKF 73
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH D
Sbjct: 74 IKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHGD 131
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE F+++L R + L + S +IF +D + +VRP+L F+K ++Y
Sbjct: 132 DQAETFLMKLIRGGNIQQLQAIQ-SVRIF-------REDYQ-----IVRPMLIFNKKEIY 178
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + ED TN+S + RNR+R
Sbjct: 179 DYAKQLGIKYYEDETNKSDDYQRNRLR 205
>gi|322436275|ref|YP_004218487.1| tRNA(Ile)-lysidine synthetase [Granulicella tundricola MP5ACTX9]
gi|321164002|gb|ADW69707.1| tRNA(Ile)-lysidine synthetase [Granulicella tundricola MP5ACTX9]
Length = 351
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 23/217 (10%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
GLK R+ VSGG DS+A+ +L NG + G+ A+ V+HGLR ES
Sbjct: 8 GLKVGERVCCAVSGGADSVAMLLLVC-------AANGGSKGLGLGVSAVHVNHGLRGAES 60
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVL 195
+ V+ +G+ I R D +G ++EAAR++RY F+++ + + V+
Sbjct: 61 DGDEGFVAALCEGLGVPLTIERADVAGRVAARGETVEEAAREVRYECFRRLIAEGRANVV 120
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
L AH DDQAE +++L R + GL G++ ++ +VRP+L
Sbjct: 121 LTAHTLDDQAETVLMKLLRGAWTEGLGGISPVVEVPGGR--------------VVRPVLG 166
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ ++ + + + W ED +N F RNR+R ++
Sbjct: 167 VRRGELVEFLKAKGQGWREDSSNADEAFTRNRLRHTV 203
>gi|418030587|ref|ZP_12669072.1| hypothetical protein BSSC8_00160 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351471646|gb|EHA31759.1| hypothetical protein BSSC8_00160 [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 486
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 34 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 83 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + GLAGM + + ++RP L +K+++
Sbjct: 143 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR--------------IIRPFLTITKEEIL 188
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ + D +N + RNR R ++ S Q V A +++
Sbjct: 189 HYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFMKQESPDVHKRFQKVSEALTEDEQFLQ 248
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 249 SLTKDEMNKVIT 260
>gi|167629385|ref|YP_001679884.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
gi|167592125|gb|ABZ83873.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
Length = 463
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 124/288 (43%), Gaps = 41/288 (14%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EES 136
++P R+ + VSGG DS++L +L F+Q A +D L++ +HGLR E +
Sbjct: 15 IEPQQRVLIAVSGGIDSVSLLLL--------FHQ---AAPQMDLKLSVAHYNHGLRGEAA 63
Query: 137 KEEANIVSHRVSDMGIRCEIVRC--DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E+ V+ +G+ C R W P G EAAR +RY ++V
Sbjct: 64 DEDEAFVAALAGRLGLPCYRERAPQGWWTREP--GTKMEAARRLRYDFLERVAKAAGADR 121
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+ + HHADDQ E + R SG+ GLAGM + +RPLL
Sbjct: 122 IALGHHADDQVETVLFHFLRGSGLRGLAGMPIRRGPY------------------IRPLL 163
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISAC 311
F + ++ Q ++W D +N S L+ RNRIR L L + F + + C
Sbjct: 164 AFRRAELAAFLQAERQEWRHDASNDSTLYTRNRIRHELIPLLHDYNPRFAEAIGRMSRLC 223
Query: 312 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL 359
Y++ V + A ++G LE L P I L +F+
Sbjct: 224 LDDADYLDEVADREL--ARLTNEEGLDAKGLEAL-PRAIGRRVLRRFI 268
>gi|227891603|ref|ZP_04009408.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC
11741]
gi|227866750|gb|EEJ74171.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC
11741]
Length = 453
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 25/208 (12%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ ++ L VS G DSM VL +G N E +DH LRE+SKEE
Sbjct: 24 NRKVLLAVSTGVDSM---VLLSGMLKLSKVLNIEIN-------VAYIDHQLREQSKEETK 73
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ I + R + + P Q ++ AAR++RY F+KV ++ I L+ AHH
Sbjct: 74 FIKEFCFARNIPLYVYRWE-KEEHPVQS-IEAAAREVRYNFFEKVLKENNIEYLVTAHHG 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE F+++L R + L + S +IF +D + +VRP+L F+K ++
Sbjct: 132 DDQAETFLMKLIRGGNIQQLQAIQ-SVRIF-------REDYQ-----IVRPMLIFNKKEI 178
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR 289
Y + + ED TN+S + RNR+R
Sbjct: 179 YDYAKQLGIKYYEDETNKSDDYQRNRLR 206
>gi|393724218|ref|ZP_10344145.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. PAMC 26605]
Length = 369
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 108/232 (46%), Gaps = 33/232 (14%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
+ ++R+ F R ++A P R+AL VSGGPDSMAL L A F
Sbjct: 14 VARFRQDFERVHSLA---PTDRLALAVSGGPDSMALLALAAA-------------AFPGQ 57
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
++A TVDH LR + +EA +V+ + I + + G +Q ARD RY L
Sbjct: 58 IVAATVDHRLRAAAADEALMVTEWCAAHSIPHATLVVEEPIG---TSAVQGRARDRRYAL 114
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ L AHHADDQAE F++R R +GV GL G+ ++
Sbjct: 115 LFEWVNGVGAACLATAHHADDQAETFLMRAVRGAGVAGLGGIRARQRV------------ 162
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 294
++ LVRPLL + ++ Q +V+DP+N P + R R R L D
Sbjct: 163 --GAVELVRPLLGWRGAELRAFAQAQALPFVDDPSNGDPHYERTRFRALLRD 212
>gi|19115552|ref|NP_594640.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1723551|sp|Q10441.1|TILS_SCHPO RecName: Full=Probable tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|1262421|emb|CAA94698.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)
[Schizosaccharomyces pombe]
Length = 456
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 109/236 (46%), Gaps = 17/236 (7%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
D K +E ++ +++ H R+ + VSGG DSM L + G +FI
Sbjct: 2 DTIKLKEFYNSLVSIRRRVGHRRLGIAVSGGVDSMLLSWFMKESQI----MFGWPNQFI- 56
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRY 180
A VDH +R+ S EEA ++ M I + +W D +L+ AR+ RY
Sbjct: 57 ---AFVVDHRIRKNSTEEALQTIWNLNRMLIPNVYLNINWGNDDVHSLTNLETIAREHRY 113
Query: 181 RLFQKVCIQHQIGVLLIAHHADDQAELFILR-LSRNSGVL-GLAGMAFSSQIFSSYAYSC 238
++ + CI H I + AHHA+DQAE +R L R G GL M SQI S +
Sbjct: 114 QVLTRACITHNIRHICTAHHANDQAETIFMRLLRRKPGTWGGLCAMKPVSQIPESDSICG 173
Query: 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRS-PLFVRNRIRMSLG 293
+++ L+RPLL + K+ + + W EDPTN L RN IR L
Sbjct: 174 ASNIE-----LLRPLLPYYKNQILNTAKQHGIAWEEDPTNADINLTPRNAIRRFLN 224
>gi|325288401|ref|YP_004264582.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271]
gi|324963802|gb|ADY54581.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271]
Length = 475
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 31/228 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + VSGGPDS+AL W E + L+ + HG+R ES +E +V
Sbjct: 19 RILVAVSGGPDSIAL------WHILDRYAREEKSDI--SLVISHIHHGVRRESDQEEEMV 70
Query: 144 SHRVSDMGIRCEIVRC---DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ R D+ D K QEAAR+ RY FQ+ ++Q ++ AHH
Sbjct: 71 RKLAGKFETELSVHRFKAKDYADKSKKS--FQEAAREWRYARFQEDKDKYQCHLIATAHH 128
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DQAE + RL R SG GL G I+ S ++RPLL SK +
Sbjct: 129 LGDQAETLLYRLLRGSGTSGLGG------IYPSAGE------------IIRPLLTVSKQE 170
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 308
+ C+ + D +N P++VRN+IR+ L + ++ S ++ +
Sbjct: 171 ILAYCEAEGLSFALDQSNFEPVYVRNKIRLELLPILKKNYNSRIEEAL 218
>gi|312880244|ref|ZP_07740044.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
gi|310783535|gb|EFQ23933.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
Length = 442
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 118/275 (42%), Gaps = 42/275 (15%)
Query: 70 FSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
FSR A G + + +SGG DS+AL L + G Q +
Sbjct: 5 FSRLRAAGCRQGWWGQPEMLIAISGGGDSVALAGLLRRYWRG--RQ-----------VWA 51
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
+DHG+R+ES +A VS S GI C + R R + L+ A R +RY ++
Sbjct: 52 HLDHGIRKESSRDALFVSELASRWGIPCVVERVSLPALRERGESLEMAGRRVRYGFLERT 111
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ + +AH ADDQAE +L L+R +G+ GLAGM +
Sbjct: 112 ASNASLAFIALAHTADDQAETLLLHLARGTGIWGLAGMPERRGNW--------------- 156
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSC----SFKS 302
VRPL F ++++ + WVED +N+ +F+RNR+R L +F
Sbjct: 157 ---VRPLATFRREELRSFLREEGISWVEDLSNQDRMFLRNRVRHDLIPWFETHLNPAFSL 213
Query: 303 ELQAVISACRRTRSYV----EHVCSNLINEAVTVM 333
QA+ + R+ R + E L EA V+
Sbjct: 214 RAQALAAEARQVRERLAGEAEQCLRWLAREAFPVL 248
>gi|390457096|ref|ZP_10242624.1| tRNA(Ile)-lysidine synthase [Paenibacillus peoriae KCTC 3763]
Length = 482
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 97/214 (45%), Gaps = 25/214 (11%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVIHMPLQLICAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + I E++R D + G QEAAR++RY + + +A
Sbjct: 76 AEEVRSIARKLAIPFEMIRVDVPVYMKESGKGPQEAARELRYSFLHDTAAKWGAQHIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQAE +L L R SG GLAGM + + ++ L+RPLL K
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLAR--------------REKNVQLIRPLLRMYK 181
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D+ + C+ + +V D TN + + RN IRM +
Sbjct: 182 ADLIEFCRFYSLSYVTDSTNLTSKYRRNAIRMDV 215
>gi|334882362|emb|CCB83361.1| tRNA(Ile)-lysidine synthase [Lactobacillus pentosus MP-10]
Length = 448
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 68 EAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+RR+A AG L P + + VS G DSM L L Q L+
Sbjct: 5 QKFNRRLAAAGVLSPQVTVVVAVSTGVDSMVLLRLLQQLPVTERPQ----------LVVA 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQK 185
V+H LR +S+ EA + + R ++ DW P+ G ++ A R RYR F K
Sbjct: 55 HVNHHLRAQSQTEAAYLQRYCQEH--RLDLKLADWQATDHPEHG-VEAAGRQFRYRFFTK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +L AHHA+DQ E ++++L+R + L G+A S+ F+
Sbjct: 112 VMQATGAKAVLTAHHANDQVETYLMKLARGGDIAQLTGIA-DSRPFAGGQ---------- 160
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LVRPLLD+SK ++ + + ED TN+ RNRIR
Sbjct: 161 ---LVRPLLDWSKAELRDYAAQHDVTYFEDATNQDVQLTRNRIR 201
>gi|467456|dbj|BAA05302.1| unknown [Bacillus subtilis]
Length = 486
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 114/252 (45%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 34 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 82
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 83 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 142
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + GLAGM + + ++RP L +K+++
Sbjct: 143 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR--------------IIRPFLTITKEEIL 188
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C + D +N + RNR R ++ S Q V A +++
Sbjct: 189 HYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQ 248
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 249 SLTKDEMNKVIT 260
>gi|428277482|ref|YP_005559217.1| hypothetical protein BSNT_00119 [Bacillus subtilis subsp. natto
BEST195]
gi|291482439|dbj|BAI83514.1| hypothetical protein BSNT_00119 [Bacillus subtilis subsp. natto
BEST195]
Length = 472
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + GLAGM + + ++RP L +K+++
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR--------------IIRPFLTITKEEIL 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ + D +N + RNR R ++ S Q V A +++
Sbjct: 175 HYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQ 234
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 235 SLTKDEMNKVIT 246
>gi|321313737|ref|YP_004206024.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5]
gi|320020011|gb|ADV94997.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5]
Length = 472
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + GLAGM + + ++RP L +K+++
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR--------------IIRPFLPITKEEIL 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ + D +N + RNR R ++ S Q V A +++
Sbjct: 175 HYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQ 234
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 235 SLTKDEMNKVIT 246
>gi|430756371|ref|YP_007211192.1| tRNA-lysidine synthetase [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430020891|gb|AGA21497.1| tRNA-lysidine synthetase [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 472
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + GLAGM + + ++RP L +K+++
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR--------------IIRPFLTITKEEIL 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ + D +N + RNR R ++ S Q V A +++
Sbjct: 175 HYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQ 234
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 235 SLTKDEMNKVIT 246
>gi|374321410|ref|YP_005074539.1| tRNA(Ile)-lysidine synthase [Paenibacillus terrae HPL-003]
gi|357200419|gb|AET58316.1| tRNA(Ile)-lysidine synthase [Paenibacillus terrae HPL-003]
Length = 482
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 96/214 (44%), Gaps = 25/214 (11%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVVHMPLRLICAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + I E++R D + G Q AAR++RY + + +A
Sbjct: 76 AEEVRRMARKLEIPFEMIRVDVPAYMKESGKGSQVAARELRYAFLHDTAAKWAAQHIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQAE +L L R SG GLAGM + K ++ L+RPLL K
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLTR--------------KEKNVQLIRPLLRMYK 181
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D+ + C+ + +V D +N S + RN IRM +
Sbjct: 182 ADLIEFCKFHDLSYVTDSSNLSSKYRRNSIRMDV 215
>gi|452838996|gb|EME40936.1| hypothetical protein DOTSEDRAFT_56007 [Dothistroma septosporum
NZE10]
Length = 561
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 121/286 (42%), Gaps = 47/286 (16%)
Query: 72 RRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131
R + +KP R+ L +SGG DSMAL LT K E F VDH
Sbjct: 22 RGLFPTNIKPQ-RLGLAISGGVDSMALATLTKIIK--------EDSTFPHTFTGFIVDHR 72
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQ-GHLQEAARDMRYRLFQKVCIQ 189
LRE+S EEA +V+ + + I I+ DW G P++ + + AR +RY+ C
Sbjct: 73 LREDSSEEAILVAKSLKQLDIEPMILNLDWNGHGDPRELNNFESVARTLRYQALGIACAA 132
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS---------SYAYSCHD 240
+I L+ HHADDQAE I R LGL G++ + I S + D
Sbjct: 133 KKIPHLIFGHHADDQAETVISRAIDGYTGLGLRGISSHAPIPECQGIHGVDHSGSPRVSD 192
Query: 241 DLK------------NHS------------ILLVRPLLDFSKDDMYKICQGGNRDWVEDP 276
L+ N+S + + RPLLD++K + IC W ED
Sbjct: 193 GLERLQVPLQPKARMNYSLGGPKIAVEQGGVSIHRPLLDYTKQQLKLICHSYGTPWHEDV 252
Query: 277 TN-RSPLFVRNRIR-MSLGD-LSSCSFKSELQAVISACRRTRSYVE 319
TN L +RN +R + G L + + RR +S +E
Sbjct: 253 TNLDRTLTIRNSVRHLQEGSLLPTALLRPRAVETAEKVRRRKSRIE 298
>gi|297566040|ref|YP_003685012.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
gi|296850489|gb|ADH63504.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
Length = 524
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 35/216 (16%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
++A L+ + VSGG DS+AL L K GF + DH LR
Sbjct: 18 SLAELEVRGSVVAAVSGGGDSVALLYLL---KALGFEA-----------IVAHFDHALRP 63
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
S EEA V H +G CE+ R + + K+ +L+ AR++RY +V +++
Sbjct: 64 SSAEEAVWVQHLAEALGYPCEVTRVEVQRVAQRKKRNLEATARELRYAFLSRVAKKYRTE 123
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253
+L AH DDQAE +L+L R +G ++ +VRPL
Sbjct: 124 AILTAHTQDDQAETVLLQLVRGTG--------------------RATGIRKRQGRVVRPL 163
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L F++ ++ + W+EDPTN+ P RN +R
Sbjct: 164 LGFTRAELRGYLRAKGASWLEDPTNQDPALDRNYLR 199
>gi|16077135|ref|NP_387948.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str.
168]
gi|221307877|ref|ZP_03589724.1| hypothetical protein Bsubs1_00340 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312199|ref|ZP_03594004.1| hypothetical protein BsubsN3_00340 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317132|ref|ZP_03598426.1| hypothetical protein BsubsJ_00340 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321395|ref|ZP_03602689.1| hypothetical protein BsubsS_00340 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402774310|ref|YP_006628254.1| tRNAile lysidine synthetase [Bacillus subtilis QB928]
gi|452913169|ref|ZP_21961797.1| tRNA(Ile)-lysidine synthase [Bacillus subtilis MB73/2]
gi|8039814|sp|P37563.2|TILS_BACSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|2632334|emb|CAB11843.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str.
168]
gi|402479496|gb|AFQ56005.1| TRNAile lysidine synthetase [Bacillus subtilis QB928]
gi|407955758|dbj|BAM48998.1| tRNAile lysidine synthetase [Bacillus subtilis BEST7613]
gi|407963029|dbj|BAM56268.1| tRNAile lysidine synthetase [Bacillus subtilis BEST7003]
gi|452118197|gb|EME08591.1| tRNA(Ile)-lysidine synthase [Bacillus subtilis MB73/2]
Length = 472
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 114/252 (45%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++A VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VIAAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + GLAGM + + ++RP L +K+++
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR--------------IIRPFLTITKEEIL 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C + D +N + RNR R ++ S Q V A +++
Sbjct: 175 HYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQ 234
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 235 SLTKDEMNKVIT 246
>gi|418940869|ref|ZP_13494216.1| tRNA(Ile)-lysidine synthase [Rhizobium sp. PDO1-076]
gi|375052409|gb|EHS48828.1| tRNA(Ile)-lysidine synthase [Rhizobium sp. PDO1-076]
Length = 427
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 140/325 (43%), Gaps = 42/325 (12%)
Query: 80 KPHHRIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
KP H + + VSGG DS L + L T GF L A T+DH LR+ S
Sbjct: 20 KPSH-LLIAVSGGSDSTGLLIALRRAIATHGFPHT---------LTAATIDHALRQASAT 69
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA V + + I I R W +PK G + AAR+ RY L ++ Q ++
Sbjct: 70 EAAWVFELCARLDIVRHIRR--WTGDKPKTG-IPAAAREARYGLLAEIAQQCGADAIVTG 126
Query: 199 HHADDQAELFILRLSR-NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
H DDQ E +R SR N LGLAGMA ++ L + I L+RP LD +
Sbjct: 127 HTHDDQIETVAMRASRANHENLGLAGMAPAT-------------LFDRRIWLLRPFLDVT 173
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 317
++ + + + W++DP+N + R R+R D + F E + R R
Sbjct: 174 REAIRDSLRQVGQSWIDDPSNADRSYERVRMRQ---DNVAIDFNPE-----AGLR--RQA 223
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGST 377
+ ++ + + T++ +D + L + +I L + RP +T
Sbjct: 224 LSQATADWLGQHATLISGCVIKLDRDAL--AAPPEILRHGMATLAAVLGGKPHRPAAQAT 281
Query: 378 SKLLLHYIRTFPCKTSLTAAGCYLC 402
KL+ + + TSLT +GC +
Sbjct: 282 DKLM--ALASAEGSTSLTLSGCLVV 304
>gi|309790448|ref|ZP_07685009.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG-6]
gi|308227496|gb|EFO81163.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6]
Length = 487
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 134/293 (45%), Gaps = 43/293 (14%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EE 135
P+ R+ + VSGGPDS+ L VL GG LL + +DHG R +
Sbjct: 19 FTPNRRVVVAVSGGPDSLCLLHVLVQLQAQGG------------PLLHVAHLDHGFRGPQ 66
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDW--LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
S EA+ V+ + G+ I R D L R ++G + AAR RY + Q Q
Sbjct: 67 SAAEADEVAQICAAWGVPISIGRVDGPALARRLRRGKM-AAARQARYAFLTDLVQQQQAH 125
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGM-----AFSSQIFSSYAYSCHDDLKNHSIL 248
L +AH ADDQAE +L R +G GL GM A QI +S H+
Sbjct: 126 ALAVAHTADDQAETVLLHALRGAGPAGLRGMRERVAAHEWQIEASVV---------HAAD 176
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 308
LVRPLL ++ ++ C +DP+NR+ + R+R+R + + + V+
Sbjct: 177 LVRPLLSTTRAEILAYCAAYQLQPADDPSNRALHYARSRVRHQIMPV----LARDNPQVV 232
Query: 309 SACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLAL 361
+A RT +C+ ++DQ + DL + P++IE I L+++ L
Sbjct: 233 AALSRT----AQICAEDYAYIQVMLDQIWP--DLVQVTPTQIE-IDLARWQTL 278
>gi|188584569|ref|YP_001928014.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001]
gi|179348067|gb|ACB83479.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001]
Length = 342
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDS AL A ++G AG L TVDH LR +S EEA V
Sbjct: 29 LAVSGGPDSTALMHAAA--------RSGRAG-----LRVATVDHALRPDSAEEAAEVGRL 75
Query: 147 VSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+ +G+ + D P++G +Q AR RY+L + G++L AH DDQA
Sbjct: 76 AARLGLPHATLTWDV----PRRGSRIQAEARAARYQLLADHAARIGAGLVLTAHTLDDQA 131
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E ++RL SG GLAGM + I LVRP LD K D+ C
Sbjct: 132 ETVLMRLIAGSGPSGLAGMPVERPLAP-------------GIRLVRPFLDLPKADLVAYC 178
Query: 266 QGGNRDWVEDPTN 278
+ ++ DP+N
Sbjct: 179 EAHRLPFLRDPSN 191
>gi|150020112|ref|YP_001305466.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429]
gi|149792633|gb|ABR30081.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429]
Length = 423
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 33/212 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I +GVSGG DSM L L G K N ID ++ +TVDHGLR+ESKEE N+V
Sbjct: 22 KILIGVSGGVDSMTLLYLLNGVKDI-LN--------ID-IVCVTVDHGLRKESKEEINLV 71
Query: 144 SHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGV--LLIAHH 200
+ + C D L + K+ ++EAAR +RY F + I+ ++G + +AH+
Sbjct: 72 KEFSRSLDVPCISGEIDVLGYSKEKKLSIEEAARKLRYEFFYR--IKEKVGASKIAVAHN 129
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+D E + RLSR +G G+ GM +K + ++RPLL F+++D
Sbjct: 130 LNDLVENVLFRLSRGAGPFGIYGMK---------------PVKGN---IIRPLLFFTRED 171
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + D +N + RN IR ++
Sbjct: 172 IEDFAGNNKIPYAVDKSNFDTKYTRNFIRHNI 203
>gi|422408239|ref|ZP_16485200.1| bifunctional protein TilS/hprT, partial [Listeria monocytogenes FSL
F2-208]
gi|313611247|gb|EFR86027.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL F2-208]
Length = 271
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 38/254 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS+AL L W + + + + ++H LRE + E N+V
Sbjct: 23 KLLVAVSGGPDSLAL--LHFLWNSDLVQK--------EAIYVAHLNHHLRENAANEQNVV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
GI I D + R + Q ++E AR +RY F+KV + I L +AHHA
Sbjct: 73 ETFCERHGIPLYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL R S +G +G+ ++ YA +RP L +K ++
Sbjct: 132 DDQIETILMRLVRGSASIGWSGIQPKREVKGGYA--------------IRPFLPITKAEI 177
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS----- 316
Q + D +N S + RNR R L K E AV + R
Sbjct: 178 IAYAQKHELAYEIDESNASQEYTRNRYRAQLLPF----LKQENPAVYAHFERFSEETSED 233
Query: 317 --YVEHVCSNLINE 328
++E + S+L+N+
Sbjct: 234 FRFLEALASDLLNK 247
>gi|331701917|ref|YP_004398876.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929]
gi|329129260|gb|AEB73813.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929]
Length = 460
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 118/266 (44%), Gaps = 31/266 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VS G DSM L + + ++ VDH LR++S EE +S
Sbjct: 23 VVVAVSTGVDSMTLLYMLQHLPRAVRPK----------IIVAYVDHQLRDQSVEETRYIS 72
Query: 145 HRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ S+ G+ + + W D PK G ++ AAR RYR F++V + LL AHH DD
Sbjct: 73 NYCSEHGLLLK--QAVWPKDDHPKVG-IEAAARTFRYRFFERVLKETGSTCLLTAHHGDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
E I++L R + L G+ + S+A + ++RPLL FSK +
Sbjct: 130 LVETVIMKLVRGGQLASLTGIRET----RSFADAN----------MIRPLLSFSKQQLES 175
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRR---TRSYVEH 320
Q W ED TN+ RNRIR + L L V+S + + +E
Sbjct: 176 FAQTTGIRWFEDETNQQLAVERNRIRHGVMPLLKAENPQLLPHVLSYTNQLADNLAAIEF 235
Query: 321 VCSNLINEAVTVMDQGYAVIDLEILN 346
+ LI+ AV ++ A IDL+ L
Sbjct: 236 LIQPLIHSAVGFPEKQRAEIDLDSLK 261
>gi|260584480|ref|ZP_05852227.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633]
gi|260157998|gb|EEW93067.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633]
Length = 450
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 36/259 (13%)
Query: 87 LGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
L VSGG DSM L L + T F+ + + H LR+ES EE +
Sbjct: 22 LAVSGGVDSMVLLESFFKLQKKFPTLQFS-------------VVHIHHHLRKESDEEEEM 68
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V + ++ I E+ W G ++ ++E AR RY+ ++ +++ +++AHHAD
Sbjct: 69 VRNFCNERSISIEVYH--WEQGFEQRVGIEEKARKFRYQKLEESMKKNKARYVVVAHHAD 126
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE +++L+R S + G+AGM S + FS Y L+RP L K+D+Y
Sbjct: 127 DQAETVLMKLTRGSTIEGIAGMK-SIRPFSE-GY------------LIRPFLTVDKEDLY 172
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
+ + ED +N+S + RNR R + L + F ++ + + +
Sbjct: 173 EYASIHQIPFKEDSSNQSLEYTRNRFRKEIIPLFKQENSKFNQKIHEFTKTLQEQQEVIL 232
Query: 320 HVCSNLINEAVTVMDQGYA 338
+ + + + + + G++
Sbjct: 233 MLANQWMEQELLELHNGWS 251
>gi|423718331|ref|ZP_17692513.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365267|gb|EID42566.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidans
TNO-09.020]
Length = 462
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 97/214 (45%), Gaps = 28/214 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P + +GVSGGPDS+AL L W ++ L+A VDH R ++S+
Sbjct: 15 LTPDSTVIVGVSGGPDSLAL--LHFFWSI--------RQKWNITLIAAHVDHMFRGKQSE 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
E+ N V H GI CE V+ D + +Q L QEAAR RYR F ++ +++ L
Sbjct: 65 EDMNFVKHFCQTRGIICEAVQID-VPAFQRQHKLGVQEAARQCRYRFFGELMEKYKADYL 123
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ HH DDQ E ++RL R S G AG+ Y ++RP L
Sbjct: 124 ALGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGY--------------IIRPFLA 169
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
S+ + C+ D +N + RNR R
Sbjct: 170 ISRAHIDAYCEKHQITPRHDASNDKDDYTRNRFR 203
>gi|424912425|ref|ZP_18335802.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|392848456|gb|EJB00979.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. viciae
USDA 2370]
Length = 441
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 107/218 (49%), Gaps = 26/218 (11%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P H I + +SGG DS L + E G + L A+TVDH LR ES +E
Sbjct: 28 EPAH-ILVAISGGSDSTGLLLAL-------HEVMSEKGRDLLRLSAVTVDHALRVESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ +++GI R W +P G + EA+R RYRL + + +++ H
Sbjct: 80 ARKVATLCAELGIPHVTRR--WEGLKPVSG-ISEASRLARYRLIAEAAVAFDADLVVTGH 136
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
A DQ E +R +RNSG LGL+GMA + Y+ + H I+ RP L
Sbjct: 137 TAGDQRETVAMRAARNSGEDNLGLSGMA------DAVLYA-----RRHWIM--RPFLRCE 183
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
+ + +R W++DP+N +P F R R+R +L D+
Sbjct: 184 RQAIRDYVSSRSRRWLDDPSNENPRFERVRMRQALPDV 221
>gi|218782103|ref|YP_002433421.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans
AK-01]
gi|218763487|gb|ACL05953.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans
AK-01]
Length = 480
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 132/304 (43%), Gaps = 48/304 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
R+ GVSGGPDS AL + + + EF L V+H LR EES +A
Sbjct: 32 RVLAGVSGGPDSTALVHVLSRLQK----------EFALQLGVAHVNHCLRGEESDRDALF 81
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + + + D R + G L+EAAR+ R F + +H + + HHA
Sbjct: 82 VQELANSLDVPFHMETVDVAAARKESGLSLEEAAREARKAFFSRAMQEHGYDFVALGHHA 141
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DD AE ++ L R +G GL+G+ + VRPL ++ ++
Sbjct: 142 DDNAEWMLISLIRGAGAGGLSGIPPVNGK------------------TVRPLFKLTRKEI 183
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHV 321
K C+ WV+D TN+ +RN+IR+ L + + A++ R
Sbjct: 184 LKYCRENALKWVQDSTNQDQSILRNQIRLHLLPILESQYNP---AIVPGLNR-------- 232
Query: 322 CSNLINEAVTVMDQGYAVIDLE-----ILNPSKIEDIFLSKF-LALVLQFICQRQRPVRG 375
SN++ E MD G A LE I N ++ + L K LAL + + Q VRG
Sbjct: 233 LSNILREEHLWMD-GMARDFLEDHAKPIKNGLELSLVHLVKQPLALQRRIVLQAMAEVRG 291
Query: 376 STSK 379
+T K
Sbjct: 292 NTRK 295
>gi|305667064|ref|YP_003863351.1| putative cell-cycle protein [Maribacter sp. HTCC2170]
gi|88707995|gb|EAR00233.1| putative cell-cycle protein [Maribacter sp. HTCC2170]
Length = 434
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 34/208 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
R L SGG DS+ L L + E G +D LA + LR+ ES ++
Sbjct: 20 RFLLACSGGLDSVVLAHLCS-----------ELG--LDFSLA-HCNFKLRDIESDKDERF 65
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + C ++ D L+ +QG +Q AAR MRY F+ + QH I L+ AHHA
Sbjct: 66 VKELAEILKVPCFVICFDTLEYANEQGVSIQMAARKMRYEWFKSLKKQHSIKTLVTAHHA 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DD E F++ LSR +G+ GL G+ + S RPLL FS+ +
Sbjct: 126 DDNIETFLINLSRGTGIKGLTGIPSKTNEIS------------------RPLLAFSRLQI 167
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + N +W ED +N+ ++RN+IR
Sbjct: 168 MEYAKQSNIEWREDQSNKETKYLRNKIR 195
>gi|374855448|dbj|BAL58305.1| tRNA(Ile)-lysidine synthetase, partial [uncultured Chloroflexi
bacterium]
Length = 473
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 116/272 (42%), Gaps = 36/272 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P + +GVSGGPDS+ L +Q+ L+ +H LR E+ E
Sbjct: 11 LLPDRPVLVGVSGGPDSLCLAHFL-------ISQDYR-------LIVAHFNHRLRPEAGE 56
Query: 139 EANIVSHRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+A V+ + G+ D W R ++ L+ AAR++RYR I+H +
Sbjct: 57 DALFVARMAQEWGMSYVQGEADVRAW--ARQRRLSLEAAARELRYRFLFSAAIEHGAQAV 114
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI--FSSYAYSCHDDLKNHSILLVRPL 253
+ H ADDQ E +L R SG+ GL GM + + + FSS I LVRP
Sbjct: 115 AVGHTADDQVETVLLHFLRGSGLKGLCGMEYRTHLRRFSS------------EIPLVRPF 162
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISA 310
L+ + ++ C +D TN S F+RNRIR+ L + + + L +
Sbjct: 163 LNTWRREIEAYCTQAGLTPCQDATNFSTRFLRNRIRLELLPILETYNPRLREHLLQMSEL 222
Query: 311 CRRTRSYVEHVCSNLINEAVTVMDQGYAVIDL 342
R + +A+ +GY +D+
Sbjct: 223 FREDYQLIAESVEMFWRKALIESKEGYVALDV 254
>gi|429463248|ref|YP_007184711.1| tRNA(Ile)-lysidine synthase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451811304|ref|YP_007447759.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338762|gb|AFZ83185.1| tRNA(Ile)-lysidine synthase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451776462|gb|AGF47461.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 334
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 105/213 (49%), Gaps = 30/213 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IA+ VSGG DS + + T FN ++ V+HGL+E + + V
Sbjct: 25 KIAIAVSGGVDSSTMSYIAKK-ATEKFNI---------SMVLFHVNHGLQETADNWSRHV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
H ++++ + EI L K+ ++ AARD RY+ F + ++H I + +AHH D
Sbjct: 75 -HSLANL-LDVEIYEKKILVDSIKKKGIEGAARDARYKAFYDLSMEHGIHHVFLAHHQKD 132
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE + RL R SGV G+AGM S++ ++I +RP LD K+++
Sbjct: 133 QAETLLFRLLRGSGVKGMAGMKKISKV--------------NNIFYIRPWLDIDKNNIDI 178
Query: 264 ICQGGNRD--W--VEDPTNRSPLFVRNRIRMSL 292
+ + D W + DPTN+ P + R IR L
Sbjct: 179 ESKKFSLDNSWFPINDPTNKDPAYSRGVIRFFL 211
>gi|384173726|ref|YP_005555111.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349592950|gb|AEP89137.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 472
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 114/252 (45%), Gaps = 30/252 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDSMAL L A G + N ++ VDH R ES+E+ V
Sbjct: 20 IIVGVSGGPDSMAL--LHALHTLCGRSAN---------VITAHVDHRFRGAESEEDMRFV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ CE + + ++G + Q AARD RY+ F+++ +HQ L +AHH D
Sbjct: 69 QAYCKAEQLMCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +++L++ + GLAGM + + ++RP L +K+++
Sbjct: 129 DQVETMLMKLAKGTLGTGLAGMQPVRRFGTGR--------------IIRPFLTITKEEIL 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ + D +N + RNR R ++ S Q V A +++
Sbjct: 175 HYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQ 234
Query: 320 HVCSNLINEAVT 331
+ + +N+ +T
Sbjct: 235 SLTKDEMNKVIT 246
>gi|448236369|ref|YP_007400427.1| tRNA(Ile)-lysidine synthase [Geobacillus sp. GHH01]
gi|445205211|gb|AGE20676.1| tRNA(Ile)-lysidine synthase [Geobacillus sp. GHH01]
Length = 464
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 105/255 (41%), Gaps = 37/255 (14%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +GVSGGPDS+AL L WK ++A VDH R ES+EE
Sbjct: 21 VIVGVSGGPDSLALLHVFLSLRDEWKLQ--------------VIAAHVDHMFRGRESEEE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + I CE + D + G QEAAR RYR F ++ +HQ G + +
Sbjct: 67 MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQ E ++RL R S G AG+ Y L+RP L S+
Sbjct: 127 HHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGY--------------LIRPFLAVSR 172
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTR 315
++ C+ DP+N + RNR R + L + Q
Sbjct: 173 AEIEAYCRQMELSPRRDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDE 232
Query: 316 SYVEHVCSNLINEAV 330
++E + ++ +N+ +
Sbjct: 233 QFLEELAADALNKVM 247
>gi|114565668|ref|YP_752822.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114336603|gb|ABI67451.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 454
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 98/219 (44%), Gaps = 37/219 (16%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L+P ++ LGVSGGPDSMAL + T E GL + ++HGLR E+
Sbjct: 15 LEPGKKVLLGVSGGPDSMALLHIMHKLTT----------EMDLGLAVLHLNHGLRPEAAA 64
Query: 139 EANIVSHRVSDMGI----RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E V + GI R +R L ++ L+EA RD RYR F + + Q
Sbjct: 65 EEEFVREHCRNWGIDFYSRQADIRALALQ---EKKTLEEAGRDCRYRYFFEQLEELQADY 121
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253
+ AHH DDQAE +L L R SG+ GL G M Q L+RPL
Sbjct: 122 IATAHHQDDQAETVLLHLLRGSGLKGLRGIMPRKGQ-------------------LLRPL 162
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L SK ++ + D +N F+RNRIR L
Sbjct: 163 LALSKAEIIHYLDENQIPYCLDQSNNDLKFLRNRIRCEL 201
>gi|261417560|ref|YP_003251242.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61]
gi|319765217|ref|YP_004130718.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52]
gi|261374017|gb|ACX76760.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61]
gi|317110083|gb|ADU92575.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52]
Length = 464
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 105/255 (41%), Gaps = 37/255 (14%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +GVSGGPDS+AL L WK ++A VDH R ES+EE
Sbjct: 21 VIVGVSGGPDSLALLHVFLSLRDEWKLQ--------------VIAAHVDHMFRGRESEEE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + I CE + D + G QEAAR RYR F ++ +HQ G + +
Sbjct: 67 MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQ E ++RL R S G AG+ Y L+RP L S+
Sbjct: 127 HHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGY--------------LIRPFLAVSR 172
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTR 315
++ C+ DP+N + RNR R + L + Q
Sbjct: 173 AEIEAYCRQMGLSPRRDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDE 232
Query: 316 SYVEHVCSNLINEAV 330
++E + ++ +N+ +
Sbjct: 233 QFLEELAADALNKVM 247
>gi|326386204|ref|ZP_08207828.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209429|gb|EGD60222.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 322
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGGPDS+AL +L A G TVDHGLR ES EA +V+
Sbjct: 29 VGLAVSGGPDSLALLLLAH------------AVLPAQGFAVATVDHGLRAESAGEAAMVA 76
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
H ++ GI + +R G +QE AR RYR + + + L+ AHHADDQ
Sbjct: 77 HLCAERGIAHDTLRISLAPGS----AIQERARAARYRALEDWRVGRGLTALVTAHHADDQ 132
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++RL+R +G+ GLA M + +L+RPLL +++ D+ +
Sbjct: 133 AETLVMRLNRGAGLRGLAAMRARVPVPGGEG------------VLLRPLLGWARADLAAL 180
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
V+DP+NR F R R+RM LG
Sbjct: 181 LGDRGIAAVDDPSNRDVRFERVRVRMGLG 209
>gi|297528435|ref|YP_003669710.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3]
gi|297251687|gb|ADI25133.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3]
Length = 464
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 105/255 (41%), Gaps = 37/255 (14%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +GVSGGPDS+AL L WK ++A VDH R ES+EE
Sbjct: 21 VIVGVSGGPDSLALLHVFLSLRDEWKLQ--------------VIAAHVDHMFRGRESEEE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + I CE + D + G QEAAR RYR F ++ +HQ G + +
Sbjct: 67 MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQ E ++RL R S G AG+ Y L+RP L S+
Sbjct: 127 HHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGY--------------LIRPFLAVSR 172
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTR 315
++ C+ DP+N + RNR R + L + Q
Sbjct: 173 AEIEAYCRQMGLSPRRDPSNEEDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDE 232
Query: 316 SYVEHVCSNLINEAV 330
++E + ++ +N+ +
Sbjct: 233 QFLEELAADALNKVM 247
>gi|451848061|gb|EMD61367.1| hypothetical protein COCSADRAFT_183412 [Cochliobolus sativus
ND90Pr]
Length = 650
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 102/229 (44%), Gaps = 36/229 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DSMAL L + E + VDH +R ES EEA+ V+
Sbjct: 10 VGIAISGGVDSMALAAL--------YKDFQEEDSELPKAHGFIVDHKVRPESTEEASWVA 61
Query: 145 HRV-SDMGIRCEIVRCDWLDGRPKQGHLQEA------ARDMRYRLFQKVCIQHQIGVLLI 197
++ S +GI I+ W P + L ++ AR +RY+ + C +I L++
Sbjct: 62 EQLRSKLGIDSTIISLTW----PTEFDLHDSKRFETEARMLRYQALGRACRDMKINRLIV 117
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA----YSCHDDLK---------- 243
AHHADDQAE ++R++ N GL M I Y + LK
Sbjct: 118 AHHADDQAETVMMRMANNRLRSGLQAMQRKEWIPECEGIYGVYHSGNPLKPRPSLNIPFP 177
Query: 244 --NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR-SPLFVRNRIR 289
I ++RPLLDF K + C+ W ED TN+ L RN IR
Sbjct: 178 IEQGGIKILRPLLDFEKTRLIATCEEKGIAWAEDKTNQIQTLTSRNAIR 226
>gi|148906402|gb|ABR16355.1| unknown [Picea sitchensis]
Length = 410
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 134/301 (44%), Gaps = 33/301 (10%)
Query: 67 REAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
R R + AG RI + VSGG DS +C+L W Q+ E + +
Sbjct: 77 RNLSDRHLVQAG----ERILVAVSGGQDS--ICLL---WMLSQLQQSWEWKVGV-----V 122
Query: 127 TVDHGLREESKE-EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA-ARDMRYRLFQ 184
DH +S +A+ V+H +MG D+ P E AR RY +
Sbjct: 123 HCDHQWNPQSSAAQASHVAHVAREMGY-------DFYQSLPTMDAFGETRARTWRYGVLH 175
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
++ ++H V++ AH A D+ E + L R +G+ G+ + ++ + Y H K+
Sbjct: 176 RIALRHAYDVVITAHTASDRIETLLHNLFRGTGLQGMQSLTWTREFRVRVPY--HKPYKH 233
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS-- 302
+ LVRPLLD ++ ++ K+C+ DP+N + RNRIR L +F S
Sbjct: 234 --VRLVRPLLDTTRTELRKLCETLQLPLWPDPSNFNLEINRNRIRHELLPYLRENFSSGI 291
Query: 303 --ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN--PSKIEDIFLSKF 358
L + S++ +C N+ ++A T MD G +D+ I+ P ++ L +F
Sbjct: 292 DRNLARWVEILHGEESFLHSLCENIRSKAETSMDHGVMKLDVSIVESLPLALQRRVLKQF 351
Query: 359 L 359
+
Sbjct: 352 I 352
>gi|304312484|ref|YP_003812082.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HdN1]
gi|301798217|emb|CBL46439.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium
HdN1]
Length = 463
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 125/280 (44%), Gaps = 45/280 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ +G SGG DS L L W + ++A+ V+H L +
Sbjct: 21 RLLVGFSGGLDSTVLLYLARRWSL----------QSSVPIVAVHVNHQLSAHAFAWQQHC 70
Query: 144 SHRVSDMGI--RCEIVRCDWLDGRPKQGH---LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
GI CE V D H ++ AAR RY++FQ++ VLL+
Sbjct: 71 VDLCEAWGIALHCEAVHVD--------AHGVGVESAARAARYQVFQRLAKPSD--VLLLG 120
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN-HSILLVRPLLDFS 257
HH DDQ E F LRL R SGVLGLA M DD+ + +VRPLL S
Sbjct: 121 HHRDDQVETFFLRLMRGSGVLGLASM---------------DDVSEWQGLCIVRPLLGLS 165
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAV---ISACRRT 314
K +++ + WVED +N+S + RN +R+ + + + S +AV + CR
Sbjct: 166 KSVLHEFAKSQQWTWVEDESNQSDRYDRNFLRLEVLPRLAQRWPSSAEAVERSVRHCREA 225
Query: 315 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIF 354
+ ++ + + + E + D G +V L +L+ S+ ++
Sbjct: 226 QGLLDELAAMDV-ETLCQTDGGISVDRLRLLSLSRARNVL 264
>gi|296117358|ref|ZP_06835948.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC
23769]
gi|295976124|gb|EFG82912.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC
23769]
Length = 440
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 99/208 (47%), Gaps = 31/208 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ VSGG DS+AL +LT W+ ++ + VDHGLR ES +EA
Sbjct: 41 VAIAVSGGADSLALALLTRRWRRA--------------VVGLVVDHGLRAESADEAARTV 86
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+++M I ++R L G + + E AR +RY+ C + LL+ HH DDQ
Sbjct: 87 RCLAEMDIPARLLR---LRGLLRGPRMAERARRLRYQALCHACRELGCLDLLLGHHGDDQ 143
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++R +SG GLA MA + + + VRPLL K D+Y
Sbjct: 144 AETVMMRQRASSGPDGLAAMAQA--------------VAGTDVRFVRPLLGVCKADLYAT 189
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ DWVEDP+N R R R +L
Sbjct: 190 LRHAGIDWVEDPSNTDLRTERARARHAL 217
>gi|365875284|ref|ZP_09414813.1| tRNA(ile)-lysidine synthetase [Elizabethkingia anophelis Ag1]
gi|442588321|ref|ZP_21007133.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Elizabethkingia anophelis R26]
gi|365756932|gb|EHM98842.1| tRNA(ile)-lysidine synthetase [Elizabethkingia anophelis Ag1]
gi|442562026|gb|ELR79249.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Elizabethkingia anophelis R26]
Length = 433
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 129/271 (47%), Gaps = 43/271 (15%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ + L +SGG DSM L L F + G + E A V++ LR E++N
Sbjct: 22 NQKFLLALSGGADSMVLADL--------FLKAGISFE------AAHVNYHLR---GEDSN 64
Query: 142 IVSHRVSDMGIRCEIVRCDW----LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+ V D + I+ + D +P + ++ AR++RYR F ++ + Q+ +++
Sbjct: 65 LDQQVVEDFCRQYNIILHKYDVTERDKKP-ENSIELWAREIRYRFFFRLLEEEQLDFIVM 123
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
HH +DQ E FI+ LS+ SG+ GL+G+ + N+ IL RPLL +
Sbjct: 124 GHHLNDQLETFIINLSKASGITGLSGIPEN----------------NNKIL--RPLLHIT 165
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISACRRT 314
K D+YK + + ED TN+S ++RN+IR + + ++ F IS +
Sbjct: 166 KADIYKFAKENGVSFREDHTNQSRDYLRNQIRHDISPEMEKTNPHFWENFDKSISFLNQA 225
Query: 315 RSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 345
++++E ++++ + ++D E L
Sbjct: 226 KNFIEEQLQKILDDIIISEKNDEIILDKEKL 256
>gi|171463663|ref|YP_001797776.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193201|gb|ACB44162.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 438
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 71 SRRMAMAGLKPHHRIALGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
S R + P RIA+ SGG DS+ L V A K +QN + A +
Sbjct: 3 SSRKSQQSPNPGKRIAVAFSGGLDSVVLLDTVCKAHAKNLSQSQNQ--------IFAFHI 54
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCI 188
HGL+ + + I + R LD G+++ AR RY +C
Sbjct: 55 HHGLQRLADDWLIFCEKLAKKYKIHFDF-RLLHLDNSQGLGNVESRARAGRYEALSDLCE 113
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
++ I LL+AHH +DQAE +L+L R SGV GLAGM + + NH I
Sbjct: 114 EYGIEDLLLAHHQNDQAETVLLQLLRGSGVAGLAGMPINRDM----------QRHNHRIT 163
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L RPLL+ S+ ++ + W+EDP+N+ + RN +R
Sbjct: 164 LWRPLLNQSRQELEAYAKEHKLKWIEDPSNQDTKYRRNALR 204
>gi|255023939|ref|ZP_05295925.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL J1-208]
Length = 240
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 27/211 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS+AL L W + + + + ++H LRE + E N+V
Sbjct: 23 KLLVAVSGGPDSLAL--LHFLWNSDLVQK--------EAIYVAHLNHHLRENAANEQNVV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
GI I D + R + Q ++E AR +RY F+KV + I L +AHHA
Sbjct: 73 ETFCERHGIPLYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL R S +G +G+ ++ YA +RP L +K ++
Sbjct: 132 DDQIETILMRLVRGSASIGWSGIQPKREVKGGYA--------------IRPFLPITKAEI 177
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q + D +N S + RNR R L
Sbjct: 178 IAYAQKHELAYEIDESNASQEYTRNRYRAQL 208
>gi|293375859|ref|ZP_06622125.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909]
gi|325841824|ref|ZP_08167484.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1]
gi|292645504|gb|EFF63548.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909]
gi|325489854|gb|EGC92206.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1]
Length = 459
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 29/212 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESK 137
L+ + + + VSGG DSMAL L E E + L + V+H RE S
Sbjct: 15 LEKNKSVVVAVSGGADSMALLNLLV-----------EIKELYNLHLVVAHVNHKKRENSD 63
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+ +V+ + G+ E+ +L + E AR RY F++V ++ ++
Sbjct: 64 LDEVLVNKIALENGLDYEVY---YLPKCLTNENFHEYARRERYNFFKRVAANYKADCIVT 120
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHHADD E I RL +S V GL G+ + Y + ++RPL++ +
Sbjct: 121 AHHADDHLETQIYRLLYHSTVSGLIGI----EPIVEYC----------GLKIIRPLIEVT 166
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
KDD+YK C ++ ED +N+S ++ RNRIR
Sbjct: 167 KDDIYKYCSESRIEYREDESNQSDVYTRNRIR 198
>gi|375306223|ref|ZP_09771523.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Aloe-11]
gi|375081734|gb|EHS59942.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Aloe-11]
Length = 482
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 96/214 (44%), Gaps = 25/214 (11%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P RI + VSGGPDS+AL + L+ V HG R EES E
Sbjct: 25 PGDRIVVAVSGGPDSVALLHIL---------HEISVIHMPLQLICAHVHHGFRPEESDAE 75
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V + I E++R D + G QEAAR++RY + + +A
Sbjct: 76 AEEVRSIARKLEIPFEMIRVDVPVYMKESGKGPQEAARELRYSFLHDTAAKWGAQRIAMA 135
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQAE +L L R SG GLAGM + ++ L+RPLL K
Sbjct: 136 HHGDDQAETVLLHLLRGSGPAGLAGMRLAR--------------TEKNVQLIRPLLRMYK 181
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D+ + C+ + +V D TN + + RN IRM +
Sbjct: 182 ADLIEFCRFYSLSYVTDSTNLTSKYRRNAIRMDV 215
>gi|378827374|ref|YP_005190106.1| putative tRNA(Ile)-lysidine synthase [Sinorhizobium fredii HH103]
gi|365180426|emb|CCE97281.1| putative tRNA(Ile)-lysidine synthase [Sinorhizobium fredii HH103]
Length = 444
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 98/213 (46%), Gaps = 30/213 (14%)
Query: 84 RIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEA 140
R+ + +SGG DS L V L A T F DG L+A TVDH LR ES +EA
Sbjct: 21 RVLVAISGGSDSKGLLVALHAALGTAEF----------DGFSLVACTVDHALRPESADEA 70
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V +++GI I C W +P G +Q AAR RY + + + + H
Sbjct: 71 AAVGAFCAELGIPHHI--CRWPGDKPLAG-IQAAARRKRYDMLAEAAAIFRADCIATGHT 127
Query: 201 ADDQAELFILRLSRNSGV-LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
DDQ E +R +R+ G G AGMA + L I ++RP L+ +
Sbjct: 128 LDDQNETIAMRGARDQGQGQGSAGMAAAM-------------LYGRRIWVLRPFLELRRA 174
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D+ W +DP+N +PLF R R+R SL
Sbjct: 175 DIRAFLGVCGIGWFDDPSNENPLFERARVRASL 207
>gi|317471083|ref|ZP_07930455.1| tRNA(Ile)-lysidine synthetase, partial [Anaerostipes sp. 3_2_56FAA]
gi|316901397|gb|EFV23339.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA]
Length = 309
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 43/213 (20%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+GVSGG DS+ L +L K E+ L A+ ++HG+R E+ ++ V
Sbjct: 20 IAVGVSGGADSVCLLLLLCELKQ----------EYDLELCAVHINHGIRREAFKDQEFVE 69
Query: 145 HRVSDMGIRCEIVRCDWLD--------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ C + W+ + L+EA R +RY+ F+KV H G +
Sbjct: 70 NL-------CRRRKVPWITFSEDVKGIAEKQSMSLEEAGRMIRYQCFRKVLDMHGGGKIA 122
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHH +DQAE + R+SR +G+ GL GM + D ++RPLL
Sbjct: 123 VAHHQNDQAETMLYRMSRGTGIQGLKGME-----------AVRAD-------VIRPLLCL 164
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
K+++ + +DW+ED +N F RN+IR
Sbjct: 165 KKEEILAYLKEKGQDWMEDASNEDNTFARNKIR 197
>gi|206977928|ref|ZP_03238815.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97]
gi|222093833|ref|YP_002527882.1| cell cycle protein [Bacillus cereus Q1]
gi|423374883|ref|ZP_17352220.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AND1407]
gi|206743834|gb|EDZ55254.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97]
gi|221237880|gb|ACM10590.1| cell cycle protein [Bacillus cereus Q1]
gi|401093365|gb|EJQ01466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AND1407]
Length = 476
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
LK I +GVSGGPDS+AL + A +F ++ VDH R +ES
Sbjct: 19 LKERSTIVVGVSGGPDSLALLYYLL--------EKRAAKQF--EIVVAHVDHMFRGDESH 68
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ V + + CE +R + + + G + Q AAR+ RY +++ ++ +
Sbjct: 69 EDLQFVQDLCKGLEVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HH DDQ E ++RL R S G AG+A + Y L+RPLL
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGY--------------LIRPLLGV 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+K+++ C DP+N+ ++ RNR+R
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLR 207
>gi|406909079|gb|EKD49411.1| hypothetical protein ACD_63C00151G0001 [uncultured bacterium]
Length = 333
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 33/210 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI +SGG DS+AL ++ + +F L+A V++G+REE+ E+ N V
Sbjct: 41 RIIAAISGGADSVALFLIL----------DELKKKFKLKLVAAHVNYGVREEAGEDENFV 90
Query: 144 SHRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + CE+++ G+P G+ + ARD+RY F+KV +H + +AH D
Sbjct: 91 RDLAKRLKVECEVLKT----GKPPSSGNFEAWARDVRYDFFEKVREKHNADKIAVAHTRD 146
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E +L R +G LGLAGM + ++RP LD K D+
Sbjct: 147 DQVETVLLNFLRGAGPLGLAGMRYRRG------------------RIIRPFLDVIKTDLV 188
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + D TN + F RN IR L
Sbjct: 189 RYINKRGEKYRVDKTNINLKFKRNWIRHKL 218
>gi|408784863|ref|ZP_11196613.1| hypothetical protein C241_00240 [Rhizobium lupini HPC(L)]
gi|408489202|gb|EKJ97506.1| hypothetical protein C241_00240 [Rhizobium lupini HPC(L)]
Length = 461
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 26/218 (11%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P H I + +SGG DS L + E G + L A+TVDH LR ES +E
Sbjct: 28 EPAH-ILVAISGGSDSTGLLLAL-------HEVMSEKGRDLLRLSAVTVDHALRVESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ +++GI R W +P G + EA+R RYRL + + +++ H
Sbjct: 80 ARKVATLCAELGIPHVTRR--WEGLKPVSG-ISEASRLARYRLIAEAAVAFDADLVVTGH 136
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
A DQ E +R +RNSG LGL+GMA + Y+ + H I+ RP L
Sbjct: 137 TAGDQRETVAMRAARNSGEDNLGLSGMA------DAVLYA-----RRHWIM--RPFLRCE 183
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
+ + +R W++DP+N +P + R R+R +L D+
Sbjct: 184 RQAIRDYVSSRSRRWLDDPSNENPRYERVRMRQALPDV 221
>gi|409998314|ref|YP_006752715.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei W56]
gi|406359326|emb|CCK23596.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei W56]
Length = 283
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 16 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 62
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 63 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 117
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 118 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRAWHGRRLVRPLLP 163
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 164 YSKAMIRSYADQHNVRFCEDSSNADPHYARNQLR 197
>gi|422811098|ref|ZP_16859509.1| bi-funtional protein tRNA(Ile)-lysidine synthetase /
Hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes FSL J1-208]
gi|378751303|gb|EHY61894.1| bi-funtional protein tRNA(Ile)-lysidine synthetase /
Hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes FSL J1-208]
Length = 648
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W + + + + ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLWNSDLVQK--------EAIYVAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + I L
Sbjct: 68 EQNVVETFCERHGIPLYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ YA +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKREVKGGYA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 316
+K ++ Q + D +N S + RNR R L K E AV + R
Sbjct: 173 TKAEIIAYAQKHELAYEIDESNASQEYTRNRYRAQLLPF----LKQENPAVYAHFERFSE 228
Query: 317 -------YVEHVCSNLINE 328
++E + S+L+N+
Sbjct: 229 ETSEDFRFLEALASDLLNK 247
>gi|345870097|ref|ZP_08822052.1| tRNA(Ile)-lysidine synthase [Thiorhodococcus drewsii AZ1]
gi|343922484|gb|EGV33186.1| tRNA(Ile)-lysidine synthase [Thiorhodococcus drewsii AZ1]
Length = 448
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 104/217 (47%), Gaps = 32/217 (14%)
Query: 75 AMAGLKPHHRIALGVSGGPDS-MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
++A L P R + SGG DS + LC L+ ++ AGE L+A+ VDHGL
Sbjct: 12 SLADLAPVSRYWVAYSGGLDSEVLLCALSEA-------RDRLAGE----LVAVHVDHGLH 60
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA-ARDMRYRLFQKVCIQHQI 192
ES A+ R ++G+ CE+ R + P +G EA AR+ RY F V +
Sbjct: 61 PESGRWADRCRARCVELGVTCEVRRFRLV---PMRGESLEALAREARYGAF--VDLLGSG 115
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
+LL AHH DDQAE +L L R SGV GLA M + LVRP
Sbjct: 116 DLLLTAHHRDDQAETLLLALLRGSGVQGLAAMPRCMPFGAGR--------------LVRP 161
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLD + + +W+EDP+N + F RN +R
Sbjct: 162 LLDLPRSALVDFAASRGLEWIEDPSNAARTFDRNYLR 198
>gi|409045812|gb|EKM55292.1| hypothetical protein PHACADRAFT_184105 [Phanerochaete carnosa
HHB-10118-sp]
Length = 543
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 102/229 (44%), Gaps = 31/229 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGW--KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
RI + SGGPDS+ L L + + GG + E F + ++ V+H L+ + +
Sbjct: 53 RIVVANSGGPDSVCLLHLLSAVVKQRGGGSLAPEQSAFPSDVYSVHVNHNLQAANAAMQD 112
Query: 142 IVSHRVSDMGIRCEIVRCDW----LDGRPKQGH-LQEAARDMR-------YRLFQKVCIQ 189
+ +G+ W RPK G L+E ARD R + CI
Sbjct: 113 VAQRTAQRLGVDHRTETIPWGTRPFPPRPKAGQPLEELARDARGAYLFATMEVLNARCIA 172
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI-- 247
+ AHHADDQ E I+RLS+ S + G AGM Q + D+
Sbjct: 173 Y-------AHHADDQVETAIMRLSKQSQIWGAAGM----QRVRRWGMGSLRDISPAGPAG 221
Query: 248 ---LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSL 292
+VRPLLD SKD + C+ + ++V DPTN P + +RN IR L
Sbjct: 222 MLHWIVRPLLDVSKDRILATCEANDLEYVVDPTNFQPDITLRNSIRAYL 270
>gi|440635874|gb|ELR05793.1| hypothetical protein GMDG_01871 [Geomyces destructans 20631-21]
Length = 602
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 104/248 (41%), Gaps = 53/248 (21%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L +SGG DSMAL L + N + F A VDH +R S EA+ V+
Sbjct: 52 IGLAISGGVDSMALAFLCSEI------HNKDRFRF----RAFVVDHKVRAGSGHEAHAVA 101
Query: 145 HRVSDMGIRCEIVRCDWLDG-RPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + I +I++ +W +G PK+ + + AR R++ K C H I L +AHH D
Sbjct: 102 KILEEKDIPTDILKIEWAEGLNPKEASNFESLARTYRFQALGKACRDHGIQSLFLAHHRD 161
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQI-------------------------------- 230
DQ E ++R+ GL GM S I
Sbjct: 162 DQVETVLMRMINGHRKDGLCGMRLSGDIPECRGIYGVHQSGVVDDSASASQIKFGRGMDL 221
Query: 231 FSSYAYSCHDD--------LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP- 281
S + DD +++ I + RPLL FSK ++ C+ W ED TN P
Sbjct: 222 TKSRSLDSSDDATFSLGMRIESGGIKVYRPLLCFSKQELRDTCEANGMSWFEDNTNADPT 281
Query: 282 LFVRNRIR 289
L +RN IR
Sbjct: 282 LTMRNAIR 289
>gi|167767831|ref|ZP_02439884.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1]
gi|167710570|gb|EDS21149.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. SS2/1]
Length = 480
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 29/206 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I +GVSGG DS+ L ++ N+ E+ + A+ ++H +R E+ ++ V
Sbjct: 32 IIIGVSGGADSVYLLLI--------LNELRESMNLT--ITAVHINHMIRREAVDDQKFVQ 81
Query: 145 HRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I C+I D + ++ L+EA R RY F K ++ + IAHH +D
Sbjct: 82 DLCGQLSILCKIFEIDVKQIAKREKMSLEEAGRKARYDAFAKTMKKYNADKIAIAHHQND 141
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE F+ R+ R +G+ G M + L+RPLL K+++ K
Sbjct: 142 QAETFLYRVVRGTGIYGAGAM------------------REKDGNLIRPLLCVKKEEIVK 183
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + WVED +N+ F RN+IR
Sbjct: 184 YLKEAGQAWVEDASNQDDAFARNQIR 209
>gi|298528449|ref|ZP_07015853.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512101|gb|EFI36003.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans
ASO3-1]
Length = 344
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 107/226 (47%), Gaps = 30/226 (13%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
+F R A LK +A G SGGPDS AL VL + N EA +
Sbjct: 22 SFVHRQAGVSLKGKKVLA-GFSGGPDSAAL-VLAMHYLAPSLNMKLEAA---------YL 70
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCD--WLDGRPKQGHLQEAARDMRYRLFQKV 186
DHGLR E+ E+ +V S + ++ + R + L GR + G ++E AR +RYR V
Sbjct: 71 DHGLRREAGEDLALVQDTCSQLSMKLHLGRSNVSRLAGRGRGG-IEETARRLRYRYLHGV 129
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ +L HH +D AE ++RL R +G GL+GM AY +
Sbjct: 130 ARKTGADYVLTGHHLNDLAEDILMRLQRGTGWPGLSGMR---------AY-----VPERR 175
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
IL RPLL + + + + +V D TN+ F+RNR+RMSL
Sbjct: 176 IL--RPLLMIPRKCIMDFLETAGQGYVLDATNKDKTFLRNRVRMSL 219
>gi|163755244|ref|ZP_02162364.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1]
gi|161324664|gb|EDP95993.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1]
Length = 436
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 21/192 (10%)
Query: 171 LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230
+Q AAR +RY FQ++ + Q +L AHH DD E F++ LSR +G+ GL G+
Sbjct: 95 IQMAARALRYEWFQEIADKFQYDYILTAHHQDDMLETFLINLSRGTGIDGLTGIP----- 149
Query: 231 FSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM 290
+N +I VRPLL F++ D+ + N W ED +N S +VRN+IR
Sbjct: 150 -----------QQNGNI--VRPLLPFTQVDILAYAKNNNLLWREDSSNASTKYVRNKIRH 196
Query: 291 SLGDLSS---CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNP 347
+ L +F QA + + S ++ L E +T + G I++E +
Sbjct: 197 DIVPLLKELHPTFMKNFQATQQHLQESNSIIKDAIQKLQAEIITEVSDGNYSIEIEAIQQ 256
Query: 348 SKIEDIFLSKFL 359
K +L + L
Sbjct: 257 QKFPKAYLFELL 268
>gi|88801375|ref|ZP_01116903.1| putative cell-cycle protein [Polaribacter irgensii 23-P]
gi|88782033|gb|EAR13210.1| putative cell-cycle protein [Polaribacter irgensii 23-P]
Length = 436
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 42/212 (19%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLRE-ESKEE 139
R+ + +SGG DS+ L L + K IT+ H LR ES +
Sbjct: 20 RLLIAISGGLDSVVLTRLLSTLK-----------------FDITLAHCNFNLRGIESNLD 62
Query: 140 ANIVSHRVSDMGIRC--EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
A V ++ ++C + + L + K+ Q AAR++RY FQ++ +H +L
Sbjct: 63 AIFVEELAKELAVKCFSTSFKTEKL-AKEKKESTQIAARNLRYHWFQEISARHHFDYILT 121
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHHADD E F++ L+R +G+ G G+ H + ++RPLL FS
Sbjct: 122 AHHADDNLETFLINLTRGTGLAGFTGIP-----------PVHGN-------VIRPLLQFS 163
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++++ + N W ED +N S ++RN+IR
Sbjct: 164 REEILHFAKENNICWREDQSNASTKYLRNKIR 195
>gi|343520169|ref|ZP_08757138.1| tRNA(Ile)-lysidine synthetase [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343397127|gb|EGV09661.1| tRNA(Ile)-lysidine synthetase [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 396
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI L +SGG DSM + L +K E L+ +H LR+++ + V
Sbjct: 18 RILLAISGGKDSMTMLDLFNAFK----------DELKLNLVVCHFNHSLRDDADRDETFV 67
Query: 144 SHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ G++ + D L + ++E AR +RY+ F ++ + + AH+ +
Sbjct: 68 KSQCEKYGLKFYSKKEDVLLFSNENKLSIEEGARTLRYKFFDQIKRIENLDYIATAHNKN 127
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D AE I+R+ R +G+ GL G+ S DL +RP+LDFS+D++
Sbjct: 128 DLAETVIMRILRGTGINGLIGIQ-----------SERGDL-------IRPILDFSRDEIE 169
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ +VED TN +++RN+IR++L
Sbjct: 170 NYIKENQIPFVEDKTNFEDMYLRNKIRLNL 199
>gi|451947816|ref|YP_007468411.1| tRNA(Ile)-lysidine synthetase [Desulfocapsa sulfexigens DSM 10523]
gi|451907164|gb|AGF78758.1| tRNA(Ile)-lysidine synthetase [Desulfocapsa sulfexigens DSM 10523]
Length = 464
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 32/214 (14%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEE 139
P + LGVSGG DS++L + + +A+ +DHGLR E++ E
Sbjct: 20 PKSSVVLGVSGGADSISLLHILSNLFPATRR------------IAVYIDHGLRPLETEAE 67
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+V + E + D + +G L+EAAR++RY+ + + + H V+ +
Sbjct: 68 KKLVREQAMACSAHFESLTIDVTGEQQAKGCSLEEAARELRYQALETLRVSHGASVIAVG 127
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H ADDQAE +LRL R G GL+GM DL + I VRPLL +K
Sbjct: 128 HTADDQAEEVLLRLIRGCGSRGLSGM----------------DLHHGHI--VRPLLQETK 169
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D + + N + D +N F+RNRIR+ L
Sbjct: 170 DTLLSYLKEQNIPFCLDSSNLDRRFLRNRIRLEL 203
>gi|297568349|ref|YP_003689693.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2]
gi|296924264|gb|ADH85074.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2]
Length = 347
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 106/214 (49%), Gaps = 37/214 (17%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +G SGGPDSMAL L+A FN LLA+ VDHGLR EES+EE
Sbjct: 24 VVVGTSGGPDSMALLYALKTLSAAMH---FN-----------LLAVYVDHGLRPEESREE 69
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+++ + + I R D +QG L+ AAR++RYR F +V + + +A
Sbjct: 70 EQLMAAVAAALEIPWRGGRVAVRDYARQQGLSLEHAARELRYRFFAQVAAETGAAKIAVA 129
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H ADDQAE +LRL R + GL+GMA L I +RPLL SK
Sbjct: 130 HTADDQAEELLLRLLRGTARGGLSGMA---------------PLARGRI--IRPLLAVSK 172
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ N + D +N+ FVRNR+R+ L
Sbjct: 173 AEVLAYLAQRNIAFARDSSNQDLRFVRNRVRLEL 206
>gi|312109215|ref|YP_003987531.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1]
gi|336233608|ref|YP_004586224.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius
C56-YS93]
gi|311214316|gb|ADP72920.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1]
gi|335360463|gb|AEH46143.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius
C56-YS93]
Length = 462
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 28/214 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P + +GVSGGPDS+AL L W ++ L+A VDH R ++S+
Sbjct: 15 LTPDSTVIVGVSGGPDSLAL--LHFFWSI--------RQKWNITLIAAHVDHMFRGKQSE 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
E+ N V H GI CE + D + +Q L QEAAR RYR F ++ +++ L
Sbjct: 65 EDMNFVKHFCQTRGIICEAAQID-VPAFQRQHKLGVQEAARQCRYRFFGELMEKYKADYL 123
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ HH DDQ E ++RL R S G AG+ Y ++RP L
Sbjct: 124 ALGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGY--------------IIRPFLA 169
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
S+ + C+ D +N + RNR R
Sbjct: 170 ISRAHIDAYCEKHQITPRHDASNDKDDYTRNRFR 203
>gi|297616333|ref|YP_003701492.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM
12680]
gi|297144170|gb|ADI00927.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM
12680]
Length = 463
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 120/274 (43%), Gaps = 36/274 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
+ P + +GVSGGPDS+AL L K GF+ + A ++HGLR E++
Sbjct: 21 ISPGELVVVGVSGGPDSVALLHLLHLLGKEEGFS-----------IHAAHLNHGLRPEAE 69
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EE V +G+ C + R + R + ++EA R RY F +V + + +
Sbjct: 70 EEEVFVRELAKSLGLGCTVDRAKVREEARAGRRSVEEAGRQARYAFFIRVAEELKADKVA 129
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AHH DQAE ++ L R SG+ GL GM+ I L+RP L
Sbjct: 130 TAHHMGDQAETVLMHLLRGSGLKGLGGMSPRRGI------------------LIRPFLTV 171
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA----VISACR 312
++ D+ + D+ D +N ++RNRIR L L + + A + + R
Sbjct: 172 TRTDIMSYLEENRLDYCLDASNYDWDYLRNRIRHQLIPLLEKEYNPNIVASLCQLATVAR 231
Query: 313 RTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN 346
+E + E + DQG V++LE +
Sbjct: 232 DEDMVLEEMAVKAFKE-IARPDQGGLVLNLETMQ 264
>gi|261253711|ref|ZP_05946284.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417954512|ref|ZP_12597546.1| tRNA(Ile)-lysidine synthase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260937102|gb|EEX93091.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342815232|gb|EGU50156.1| tRNA(Ile)-lysidine synthase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 435
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 33/215 (15%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P+ RI LG+SGG DS + L A + A ++ LA+ V HGL + + +
Sbjct: 16 QPNTRIVLGLSGGLDSRVMLELLAQY----------AQQYRVDCLAVHVHHGLSDNADQW 65
Query: 140 ANIVSHRVSDMGIR--CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
A H + ++ E V D ++GR ++E+AR+ RY +K + LL
Sbjct: 66 AEQCQHWCQSLNVQLVVEKVSLD-IEGRS----IEESAREARYNALRKYLSSGDL--LLT 118
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
HADDQ E F+L L R SG GL+ MA S+ +VRPLL +
Sbjct: 119 GQHADDQLETFLLALKRGSGPKGLSSMAAVMPFASAQ--------------IVRPLLSVT 164
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ ++ + Q + +WVED +N+ F RN IR +L
Sbjct: 165 RQEIEEFAQSLDLEWVEDESNQDQRFERNFIRHNL 199
>gi|423069875|ref|ZP_17058660.1| tRNA(Ile)-lysidine synthase [Streptococcus intermedius F0395]
gi|355363749|gb|EHG11485.1| tRNA(Ile)-lysidine synthase [Streptococcus intermedius F0395]
Length = 425
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 99/211 (46%), Gaps = 37/211 (17%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
K H RI L +SGG DSM L ++ E E ++ LLA ++HG+R+ES
Sbjct: 16 FKYHRRILLAISGGLDSMTLFDWLYKYR--------EKLE-VEILLA-HINHGVRKESDF 65
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
E + +G++ + G ++ ARD RY F+K+ + Q L+ A
Sbjct: 66 EEEELKKIAKKLGVK---IFTSSFSG----PFSEQKARDFRYTFFKKIMKEEQCTALVTA 118
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HHADDQAE +R+ R S + ++GM Q F++ L+RPLL F K
Sbjct: 119 HHADDQAETIFMRILRGSRLFHISGMK-EKQKFANGE-------------LIRPLLSFQK 164
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
D I ED TN+ ++RNRIR
Sbjct: 165 SDFPTIFH------FEDWTNQENHYLRNRIR 189
>gi|399027173|ref|ZP_10728764.1| tRNA(Ile)-lysidine synthetase [Flavobacterium sp. CF136]
gi|398075409|gb|EJL66527.1| tRNA(Ile)-lysidine synthetase [Flavobacterium sp. CF136]
Length = 436
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 117/263 (44%), Gaps = 51/263 (19%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH------GLREESK 137
++ L VSGG DSM L L F ITV H GL ES
Sbjct: 20 KLFLAVSGGLDSMVLLHL-----------------FQKLPYEITVLHCNFQLRGL--ESF 60
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
+ N + + I I + D + K L Q AAR++RY F ++ H+ +
Sbjct: 61 GDQNFIQNYCDQNNIPVFITQFD-TEAFAKDYKLSTQVAARELRYNWFYELLEIHEFDYI 119
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
L AHHADD E FI+ LSR +G+ GL G+ + ++RPLL
Sbjct: 120 LTAHHADDNLETFIINLSRGTGLDGLTGIP------------------EQNDKIIRPLLP 161
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTR 315
FS+D++ K Q N +W ED +N S ++RN+IR L + K + ++T+
Sbjct: 162 FSRDEILKYAQENNIEWREDSSNSSNKYLRNKIRHDLVPI----LKEINPDFLKVFQKTQ 217
Query: 316 SYVEHVCSNLINEAVTVMDQGYA 338
SY++ ++ +A ++ Q A
Sbjct: 218 SYLQE-SKEMVEDASIMIYQQVA 239
>gi|375111102|ref|ZP_09757313.1| tRNA(Ile)-lysidine synthase [Alishewanella jeotgali KCTC 22429]
gi|374568644|gb|EHR39816.1| tRNA(Ile)-lysidine synthase [Alishewanella jeotgali KCTC 22429]
Length = 434
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 27/242 (11%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A+ + HG+ + A + +G+ ++ R L GR L++ ARD RY++
Sbjct: 51 LTAVHIHHGISRHADAWAEFCQQQCQKLGVDFKLHRVQ-LQGR---SALEQQARDARYQV 106
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ + L+ AHHA+DQ E +L L R +G+ G+AGMA S +
Sbjct: 107 LTDY-VTARDSALVTAHHANDQLETLLLALKRGAGLAGMAGMAESRPFGNG--------- 156
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
LL+RP L+FS+ + + + WVED +N+S F RN +R+ +
Sbjct: 157 -----LLLRPWLNFSRQQLEHVARALQLSWVEDESNQSAEFDRNFLRLEVIP----KLSE 207
Query: 303 ELQAVISACRRTRSYVEHV--CSNLINEAVTVMDQGYAVIDLE--ILNPSKIEDIFLSKF 358
A+ + C RT +++ ++ E +DL+ L P+ +D+ L K+
Sbjct: 208 RWPAITTTCARTSQHLQQALELADYYTERALADCATADYLDLQQLALQPALQQDLLLRKW 267
Query: 359 LA 360
LA
Sbjct: 268 LA 269
>gi|354585809|ref|ZP_09004640.1| tRNA(Ile)-lysidine synthetase [Paenibacillus lactis 154]
gi|353184134|gb|EHB49662.1| tRNA(Ile)-lysidine synthetase [Paenibacillus lactis 154]
Length = 476
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 28/211 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VSGGPDS+AL + T L+ V HG R ES EA V
Sbjct: 29 IVVAVSGGPDSVALLHVLHEISTKHTPLK---------LVCAHVHHGFRAESDAEAEFVR 79
Query: 145 HRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+G+ EI D +++ K G QEAAR+ RY + + + +AHHA
Sbjct: 80 ELAESLGLPLEIAFADIPSYMEESGKGG--QEAAREKRYEFLLQTARTYDARSVALAHHA 137
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE +++L R SG+ GL+GM + ++ L+RP L +K D+
Sbjct: 138 DDQAETVMMKLLRGSGLSGLSGMRWKR--------------TEKNVELIRPFLRINKADI 183
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++C+ + D TN + RN IR+ +
Sbjct: 184 LELCRRCGFSYAIDYTNLQTKYRRNAIRLEV 214
>gi|319941154|ref|ZP_08015489.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis
3_1_45B]
gi|319805321|gb|EFW02131.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis
3_1_45B]
Length = 702
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 113/263 (42%), Gaps = 28/263 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + +SGG DSMAL + A Q I L A+ V HGL E+
Sbjct: 199 RVIVALSGGRDSMALLDVAARIAADRRQQ------LIAELRAVYVHHGLEREADAWEEHC 252
Query: 144 SHRVSDMGIRCEIVRCDWL---DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
G+ E VR DG ++ AARD+RYR + ++ +++ AHH
Sbjct: 253 RRECEKRGVIFEAVRVRVQRSGDG------IEAAARDVRYRALAQYALKSGCSIIMTAHH 306
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DD+ E F+L+ R +G+ GLA ++ + + L+RP + D
Sbjct: 307 EDDRIETFLLQWMRGAGLEGLAAFPEVRELAAPSMEDAKAVQARKQVFLLRPWSGVLRRD 366
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH 320
+ + + +V+DP+N SP + RNR+R SE+ + A R S
Sbjct: 367 IERYVKNRRIPYVDDPSNNSPKYARNRVR------------SEIIPRLEAIRPGFSASAA 414
Query: 321 VCSNLINEAVTVMDQGYAVIDLE 343
LI EA+ V+ + A DLE
Sbjct: 415 RSVGLIGEALEVL-KSVARADLE 436
>gi|315644384|ref|ZP_07897524.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453]
gi|315280261|gb|EFU43553.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453]
Length = 476
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 111/256 (43%), Gaps = 31/256 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VSGGPDS+AL + N L+ V HG R ES +EA +V
Sbjct: 29 IVVAVSGGPDSVALLHVL---HEISLNHTPLR------LICAHVHHGFRTESDQEAEMVR 79
Query: 145 HRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+G+ E D +++ K G QEAAR+ RY + ++ + +AHHA
Sbjct: 80 ELAERLGLPLETAFIDIPAYMEESGKGG--QEAAREKRYEFLLQTAQKYNARSVALAHHA 137
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE ++RL R SG+ GLAG+ F + L+RP L K D+
Sbjct: 138 DDQAETVLMRLLRGSGLPGLAGIKFKR--------------TEKKVELIRPFLRMYKADI 183
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL---GDLSSCSFKSELQAVISACRRTRSYV 318
++C+ + D +N + RN IR+ + + + F S L + ++ +V
Sbjct: 184 VELCRVCGFQYAVDNSNLQTKYRRNAIRLEVLPFLEQYNGQFSSSLNQLAEIVQQEDGFV 243
Query: 319 EHVCSNLINEAVTVMD 334
E + V D
Sbjct: 244 EREAAKQFRRMVQEND 259
>gi|418965924|ref|ZP_13517680.1| tRNA(Ile)-lysidine synthetase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383341175|gb|EID19441.1| tRNA(Ile)-lysidine synthetase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 425
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 99/211 (46%), Gaps = 37/211 (17%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
K H RI L +SGG DSM L ++ E E ++ LLA ++HG+R+ES
Sbjct: 16 FKYHRRILLAISGGLDSMTLFDWLYKYR--------EKLE-VEILLA-HINHGVRKESDF 65
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
E + +G++ + G ++ ARD RY F+K+ + Q L+ A
Sbjct: 66 EEEELKKIAKKLGVK---IFTSSFSG----PFSEQKARDFRYTFFKKIMKEEQCTALVTA 118
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HHADDQAE +R+ R S + ++GM Q F++ L+RPLL F K
Sbjct: 119 HHADDQAETIFMRILRGSRLFHISGMK-EKQKFANGE-------------LIRPLLSFQK 164
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
D I ED TN+ ++RNRIR
Sbjct: 165 SDFPTIFH------FEDWTNQENHYLRNRIR 189
>gi|253988142|ref|YP_003039498.1| tRNA (ile)-lysidine synthase [Photorhabdus asymbiotica]
gi|253779592|emb|CAQ82753.1| tRNA (ile)-lysidine synthase [Photorhabdus asymbiotica]
Length = 442
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 119/252 (47%), Gaps = 28/252 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H +I +G SGG DS L L W+ +NQN + L AI + HGL ++ +
Sbjct: 16 LGEHKKILVGFSGGLDSSVLLYLLVNWRNQ-YNQNVQ-------LRAIHIHHGLNIKADQ 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
D + + +D R Q ++ AARD RY++F++ + +I L+ A
Sbjct: 68 WVKHCQQICDDWQVEFFFEKVT-IDAR--QKGIEAAARDARYQVFKRELQKDEI--LVTA 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H DDQAE F+L L R SG GLA M +F+ LL+RPLL +S+
Sbjct: 123 QHLDDQAETFLLALKRGSGPAGLASMP-PIAVFA-------------DTLLLRPLLGYSR 168
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYV 318
+++ +W+ED +N+ + RN +R+ + L + + Q+V +
Sbjct: 169 NELEIYANEHCLNWIEDDSNQDDRYDRNFLRLHIMPLLNQRWPYFPQSVARSANLCGEQ- 227
Query: 319 EHVCSNLINEAV 330
E + L+NE++
Sbjct: 228 EQLLDELLNESL 239
>gi|427413896|ref|ZP_18904087.1| tRNA(Ile)-lysidine synthetase [Veillonella ratti ACS-216-V-Col6b]
gi|425714937|gb|EKU77936.1| tRNA(Ile)-lysidine synthetase [Veillonella ratti ACS-216-V-Col6b]
Length = 473
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 28/225 (12%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
AF ++ M + ++ + SGGPDSMAL W G E + V
Sbjct: 23 AFEKKRGM--VPGGSKVLVACSGGPDSMALL----HWL---ITNKGLETESALSIGVACV 73
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVC 187
DH LR ESK E +V +D G+ + D ++ + ++ +R +RY F+K+C
Sbjct: 74 DHSLRPESKAELRMVKQYAADYGLAFYPLVIDAGVEAKASGESVETVSRRLRYEFFRKIC 133
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
++ AHH +DQAE + L R SG GL GM Q+ + +
Sbjct: 134 RSEGYEYIVTAHHENDQAETILAHLIRGSGTAGLQGM----QVLAGDIW----------- 178
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RP L +K+D+ + + D TN P+++RNR+R+ +
Sbjct: 179 ---RPFLGVTKNDILGYVKESGLPFALDATNDEPIYMRNRLRLEV 220
>gi|423080871|ref|ZP_17069486.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 002-P50-2011]
gi|423087591|ref|ZP_17075978.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 050-P50-2011]
gi|357544624|gb|EHJ26626.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 050-P50-2011]
gi|357551951|gb|EHJ33730.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 002-P50-2011]
Length = 462
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 130/266 (48%), Gaps = 33/266 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGLSGGPDSVCLLHVLNRLKK----------DFNIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS DMGI + + +G L+E AR +RY +F ++ + + + I H+
Sbjct: 71 VSKLCEDMGIVFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNL 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQAE ++R+ R +G+ GL G+ + +C ++RP+LD ++++
Sbjct: 131 NDQAETVMMRIMRGTGLKGLKGIDYIRD-------NC----------IIRPILDVERNEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVI---SACRRTRSY 317
+ C+ N + D TN ++ RN+IR+ L +F S +++++ ++ + Y
Sbjct: 174 EEYCEAYNLNPRIDKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDY 233
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLE 343
+E E + ++G+ I+L+
Sbjct: 234 IEKEAEAKFREVSNIKEKGFVEINLD 259
>gi|384134042|ref|YP_005516756.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339288127|gb|AEJ42237.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 513
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 95/203 (46%), Gaps = 24/203 (11%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
LGVSGG DSM L L EA + G + V HGLRE + +A V
Sbjct: 65 LGVSGGVDSMVLLHLCQ-------RAAEEAPRALGGFSVVHVHHGLREAADADAAFVERY 117
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
D GI CEIVR D R +G A R L ++ + + GV+L+AHHA D+ E
Sbjct: 118 CRDRGIACEIVRVTVEDAR-GEGVEAAARRARYEALAERA--RAKGGVILVAHHAQDELE 174
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
F++RL R +G GL M +++ + + ++RPLL K ++ +
Sbjct: 175 TFVMRLLRGAGPGGLGAMRTEAEM--------------NGVRVLRPLLAVEKREIERYAA 220
Query: 267 GGNRDWVEDPTNRSPLFVRNRIR 289
VED TN P F RNR+R
Sbjct: 221 LHGVPHVEDETNEDPRFFRNRVR 243
>gi|418000176|ref|ZP_12640372.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei T71499]
gi|410537096|gb|EKQ11675.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei T71499]
Length = 436
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRTWHGRRLVRPLLP 157
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 158 YSKTMIRSYANQHNVRFCEDSSNADPHYARNQLR 191
>gi|255102772|ref|ZP_05331749.1| putative ATPase [Clostridium difficile QCD-63q42]
Length = 462
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 130/266 (48%), Gaps = 33/266 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGLSGGPDSVCLLHVLNRLKK----------DFNIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS DMGI + + +G L+E AR +RY +F ++ + + + I H+
Sbjct: 71 VSKLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNL 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQAE ++R+ R +G+ GL G+ + +C ++RP+LD ++++
Sbjct: 131 NDQAETVMMRIMRGTGLKGLKGIDYIRD-------NC----------IIRPILDVERNEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVI---SACRRTRSY 317
+ C+ N + D TN ++ RN+IR+ L +F S +++++ ++ + Y
Sbjct: 174 EEYCEAYNLNPRIDKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDY 233
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLE 343
+E E + ++G+ I+L+
Sbjct: 234 IEKEAEAKFREVSNIKEKGFVEINLD 259
>gi|189485208|ref|YP_001956149.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287167|dbj|BAG13688.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 321
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P +I L VSGG DSM C+L W+ A + LA+ +H LR+ES +EA
Sbjct: 19 PGDKIILSVSGGMDSM--CMLHLFWRL--------AKKMDIVFLAVNFNHNLRKESVKEA 68
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + ++ GI C + + K ++ A R++RY +++ +++ + AH
Sbjct: 69 ETVKNLSAEFGIDCLLEEIGVKEYSKKYSLSVETAGRNLRYLTLERISKKYKCNKIATAH 128
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
+A+D AE ++RL R SG AG+ +I N +I+++RPLL +
Sbjct: 129 NANDNAETVLMRLLRGSG--NFAGIPQKRKI-------------NRNIVVIRPLLPVKRK 173
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS-ACRRTR--S 316
+ + + + D +N S ++ RN+IR+SL + ++ + + +C ++R +
Sbjct: 174 FIEEYVRNHKLPFCTDKSNFSDIYTRNKIRLSLMPVFEKINPMAVEHIFALSCIQSRENA 233
Query: 317 YVEHVCSNLINEAV 330
Y+E V + + + V
Sbjct: 234 YLEEVSAKFLKKCV 247
>gi|365087921|ref|ZP_09327679.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. NO-1]
gi|363417357|gb|EHL24438.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. NO-1]
Length = 323
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM P +A+G+SGG DS AL + A G AI V HGL+
Sbjct: 10 AMQAFAPALPLAVGLSGGADSTALLLACARRWPGQVQ-------------AIHVHHGLQA 56
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQ-- 191
+ + D+G+ + R +D R G E AAR RY+ F+ V + +
Sbjct: 57 AADGFEQHCARLCQDLGVPLWVER---VDARHAPGQSPEDAARQARYKAFEAVALASKAR 113
Query: 192 --IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + +A HADDQ E +L LSR +GV GLA M + ++
Sbjct: 114 VAIQSIALAQHADDQVETLLLALSRGAGVAGLAAMPAR--------------WERAGVVW 159
Query: 250 VRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
RPLL + D+ + ++ WVEDPTN + RNRIR L +F +
Sbjct: 160 HRPLLRVASADVRSWLRLQDQSWVEDPTNADQRYTRNRIRAQLLPALEATFPA 212
>gi|335033171|ref|ZP_08526540.1| hypothetical protein AGRO_0512 [Agrobacterium sp. ATCC 31749]
gi|333795348|gb|EGL66676.1| hypothetical protein AGRO_0512 [Agrobacterium sp. ATCC 31749]
Length = 443
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 33/251 (13%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP H I + +SGG DS L + + +A + L A+TVDH LR ES +E
Sbjct: 28 KPTH-ILIAISGGSDSTGLLL--------ALQEAKKADDKGLRLSAVTVDHALRPESADE 78
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ +++GIR R W +P G L EA+R RYRL V + + +++ H
Sbjct: 79 ARKVAMLCAELGIRHATRR--WDGPKPASG-LSEASRLARYRLIADVARETGVDLVVTGH 135
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
DQ E +R +R+ G LGL+GMA + Y H + ++RP L
Sbjct: 136 TIGDQRETVAMRAARSGGSDNLGLSGMA------DAVLYDAH-------LWIMRPFLACE 182
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG------DLSSCSFKSELQAVISAC 311
+ + +R W++DP+N + + R R+R +L D S+ + L +
Sbjct: 183 RQVIRDYMSSRSRHWLDDPSNENIRYERVRVRQTLPHSPIALDESTAVRRQMLSERTAVF 242
Query: 312 RRTRSYVEHVC 322
R R+ V H
Sbjct: 243 LRERAQVFHAA 253
>gi|126701186|ref|YP_001090083.1| transfer RNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Clostridium
difficile 630]
gi|254977186|ref|ZP_05273658.1| putative ATPase [Clostridium difficile QCD-66c26]
gi|255094515|ref|ZP_05323993.1| putative ATPase [Clostridium difficile CIP 107932]
gi|255308593|ref|ZP_05352764.1| putative ATPase [Clostridium difficile ATCC 43255]
gi|255316267|ref|ZP_05357850.1| putative ATPase [Clostridium difficile QCD-76w55]
gi|255518928|ref|ZP_05386604.1| putative ATPase [Clostridium difficile QCD-97b34]
gi|255652107|ref|ZP_05399009.1| putative ATPase [Clostridium difficile QCD-37x79]
gi|260685080|ref|YP_003216365.1| ATPase [Clostridium difficile CD196]
gi|260688738|ref|YP_003219872.1| ATPase [Clostridium difficile R20291]
gi|306521841|ref|ZP_07408188.1| putative ATPase [Clostridium difficile QCD-32g58]
gi|384362756|ref|YP_006200608.1| putative ATPase [Clostridium difficile BI1]
gi|423089069|ref|ZP_17077435.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 70-100-2010]
gi|122973554|sp|Q181G3.1|TILS_CLOD6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|115252623|emb|CAJ70466.1| transfer RNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Clostridium
difficile 630]
gi|260211243|emb|CBA66771.1| putative ATPase [Clostridium difficile CD196]
gi|260214755|emb|CBE07452.1| putative ATPase [Clostridium difficile R20291]
gi|357558744|gb|EHJ40224.1| tRNA(Ile)-lysidine synthetase [Clostridium difficile 70-100-2010]
Length = 462
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 130/266 (48%), Gaps = 33/266 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGLSGGPDSVCLLHVLNRLKK----------DFNIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS DMGI + + +G L+E AR +RY +F ++ + + + I H+
Sbjct: 71 VSKLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNL 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQAE ++R+ R +G+ GL G+ + +C ++RP+LD ++++
Sbjct: 131 NDQAETVMMRIMRGTGLKGLKGIDYIRD-------NC----------IIRPILDVERNEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVI---SACRRTRSY 317
+ C+ N + D TN ++ RN+IR+ L +F S +++++ ++ + Y
Sbjct: 174 EEYCEAYNLNPRIDKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDY 233
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLE 343
+E E + ++G+ I+L+
Sbjct: 234 IEKEAEAKFREVSNIKEKGFVEINLD 259
>gi|118587144|ref|ZP_01544573.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163]
gi|421186995|ref|ZP_15644375.1| hypothetical protein AWRIB418_1607 [Oenococcus oeni AWRIB418]
gi|118432423|gb|EAV39160.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163]
gi|399964702|gb|EJN99337.1| hypothetical protein AWRIB418_1607 [Oenococcus oeni AWRIB418]
Length = 299
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 26/209 (12%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ L +SGG DS L L +++ + L VDH LR +S E +
Sbjct: 22 QKLLLAISGGVDSTVLADLLFKYESNPRSH----------LFLAHVDHQLRADSANETKL 71
Query: 143 VSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + ++ G+ C + W L+ P G +++AAR RY ++++ ++ +++A HA
Sbjct: 72 IDDQFANRGL-C-VFHEKWPLEKHPHSG-IEDAARKFRYDFYKRMALKVGARKIILAQHA 128
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE +L++ R + ++ M +S + K+ I +VRPLL+ K ++
Sbjct: 129 DDQAETTLLKIIRGADWQTVSAMEWSRPL-----------EKDSPIEVVRPLLNVEKSEI 177
Query: 262 YKICQGGNRDWVEDPTNRSPLFV-RNRIR 289
Y + + W+ED TN+ P + RN+IR
Sbjct: 178 YDYAEKNHLKWIEDSTNKDPDYTSRNQIR 206
>gi|312871576|ref|ZP_07731669.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a]
gi|311092971|gb|EFQ51322.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a]
Length = 430
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 107/229 (46%), Gaps = 33/229 (14%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++AG K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNS------- 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLVRPLL FSK+++ + +V D TN+ +RNR+R
Sbjct: 157 -------LLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQENETLRNRLR 198
>gi|83592433|ref|YP_426185.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170]
gi|386349149|ref|YP_006047397.1| PP-loop protein [Rhodospirillum rubrum F11]
gi|83575347|gb|ABC21898.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170]
gi|346717585|gb|AEO47600.1| PP-loop protein [Rhodospirillum rubrum F11]
Length = 462
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 89/205 (43%), Gaps = 27/205 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+P IA+GVSGG DS+ L A W A E A+ DHGLR S
Sbjct: 28 FEPEPAIAVGVSGGVDSLTLLAFAARW----------AAERGGRCTAVCFDHGLRAASAG 77
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA +V +G ++R G P +QEAAR R C + LL+A
Sbjct: 78 EARLVETTARSLGAEAVVLR---WAGPPPSSGVQEAARRARLDGLLGWCAGAGVLHLLLA 134
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQAE + RL R SG GLA MA A S + + ++RP L+ +
Sbjct: 135 HHRDDQAETVLQRLGRGSGADGLAAMA---------ALSSRGEAR-----ILRPFLEVPR 180
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLF 283
+ + W EDP+N P +
Sbjct: 181 AAIEASARRIGLVWAEDPSNHDPHY 205
>gi|220925335|ref|YP_002500637.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060]
gi|254789037|sp|B8IP16.1|TILS_METNO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|219949942|gb|ACL60334.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060]
Length = 339
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 103/232 (44%), Gaps = 30/232 (12%)
Query: 67 REAFSRRM-AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
RE F+RR+ G + L VSGGPDS AL GG + + ++
Sbjct: 10 REEFARRLDRWLGPGAAGGVVLAVSGGPDSTALM--------GGAARL----PPLVPVMV 57
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK 185
TVDHGLR E+ EA V+ +G+ I+ W +P+ LQEAAR RYRL
Sbjct: 58 ATVDHGLRPEAAAEAEAVARLAGRLGLPHRIL--AWTGPKPRT-RLQEAARAARYRLLLD 114
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+ + LL AH DDQAE ++RL SG GL G+ +
Sbjct: 115 LAREQGAAALLTAHTLDDQAETVLMRLCAGSGPAGLGGIEPVRHL--------------G 160
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
+ LVRP LD K + C +V DP N F R R+R + L++
Sbjct: 161 GLALVRPFLDLPKARLVATCAAEGWPFVVDPGNADARFARGRLRRVMPHLAA 212
>gi|392374624|ref|YP_003206457.1| ATPase; tRNA(Ile)-lysidine synthase [Candidatus Methylomirabilis
oxyfera]
gi|258592317|emb|CBE68626.1| Putative ATPase; tRNA(Ile)-lysidine synthase (modular protein)
[Candidatus Methylomirabilis oxyfera]
Length = 468
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 102/222 (45%), Gaps = 34/222 (15%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
RM AG + L VSGG DSMA+ L +T + L ++H L
Sbjct: 17 RMLAAG----EAVVLAVSGGVDSMAMLHLLLHLRT----------RYHGPLHVAHLNHDL 62
Query: 133 R-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQ-GHLQEAARDMRYRLFQKVCIQH 190
R ES E A V + I I R D R ++ G LQ AARD+RYR ++V +
Sbjct: 63 RGAESAETARFVQRQCEARQIPVTITRADGRALRDRRAGSLQAAARDLRYRFLERVADEQ 122
Query: 191 QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLV 250
G + + HH DDQAE ++ L R SGV G+ G+ ++
Sbjct: 123 GAGRIAVGHHRDDQAETVLMNLLRGSGVRGIGGIPPVRG------------------RII 164
Query: 251 RPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RPL+D S++++ + + +VED +N + RNRIR+ L
Sbjct: 165 RPLIDCSREEIERYVRKERIPYVEDSSNHVLAYSRNRIRLEL 206
>gi|56418595|ref|YP_145913.1| hypothetical protein GK0060 [Geobacillus kaustophilus HTA426]
gi|375006870|ref|YP_004980499.1| tRNA(Ile)-lysidine synthase [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|61216398|sp|Q5L3T3.1|TILS_GEOKA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|261824766|pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna
gi|261824767|pdb|3A2K|B Chain B, Crystal Structure Of Tils Complexed With Trna
gi|56378437|dbj|BAD74345.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359285715|gb|AEV17399.1| tRNA(Ile)-lysidine synthase [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 464
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 105/255 (41%), Gaps = 37/255 (14%)
Query: 85 IALGVSGGPDSMALC----VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ +GVSGGPDS+AL L WK ++A VDH R ES+EE
Sbjct: 21 VIVGVSGGPDSLALLHVFLSLRDEWKLQ--------------VIAAHVDHMFRGRESEEE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + I CE + D + G QEAAR RYR F ++ +HQ G + +
Sbjct: 67 MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVG 126
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQ E ++RL R S G AG+ Y L+RP L S+
Sbjct: 127 HHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGY--------------LIRPFLAVSR 172
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTR 315
++ C+ DP+N + RNR R + L + Q
Sbjct: 173 AEIEAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDE 232
Query: 316 SYVEHVCSNLINEAV 330
++E + ++ +N+ +
Sbjct: 233 QFLEELAADALNKVM 247
>gi|290894273|ref|ZP_06557240.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
J2-071]
gi|404406672|ref|YP_006689387.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2376]
gi|290556157|gb|EFD89704.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
J2-071]
gi|404240821|emb|CBY62221.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2376]
Length = 648
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 27/216 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W + ++ + + ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLWNSDLVSK--------EAISVAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + I L
Sbjct: 68 EQNVVETFCERHGIPFYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ YA +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKREVRGGYA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K ++ Q + D +N S + RNR R L
Sbjct: 173 TKAEIIAYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|406920102|gb|EKD58225.1| hypothetical protein ACD_56C00169G0004 [uncultured bacterium]
Length = 320
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 34/211 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEEAN 141
+I +GVSGGPDS+ C+L N + + D L I V++GLR +ES ++ +
Sbjct: 22 KIIIGVSGGPDSV--CLL---------NIMTDLSQKYDFQLHIAHVNYGLRGKESDKDED 70
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+V G + ++R D + G+L+ RD+RY F+K+ ++ ++ IAH+
Sbjct: 71 LVRKMAEKYGQQITVLRLKKSDYK---GNLENTLRDIRYEFFEKLRVEMAFDLIAIAHNQ 127
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE ++R+ R SG+ GL+ +K S L+RPLL SK+++
Sbjct: 128 DDQAETVLMRVLRGSGLEGLSA------------------IKARSDKLIRPLLKTSKEEI 169
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ ++ D +N++ F RNR+R L
Sbjct: 170 LAFNKENKLEFRLDESNKNFDFTRNRLRHEL 200
>gi|116495973|ref|YP_807707.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334]
gi|116106123|gb|ABJ71265.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334]
Length = 436
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRAWHGRRLVRPLLP 157
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 158 YSKAMIRSYADQHNVRFCEDSSNADPHYARNQLR 191
>gi|301067523|ref|YP_003789546.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus casei str. Zhang]
gi|300439930|gb|ADK19696.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei str.
Zhang]
Length = 436
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRTWHGRRLVRPLLP 157
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 158 YSKAMIRSYADQHNVRFCEDSSNADPHYARNQLR 191
>gi|138893739|ref|YP_001124192.1| cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2]
gi|134265252|gb|ABO65447.1| Cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2]
Length = 464
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 111/251 (44%), Gaps = 29/251 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDS+AL L + + E+ L+A VDH R ES+EE V
Sbjct: 21 VIVGVSGGPDSLALLHLLSSLRD----------EWKLQLVAAHVDHMFRGRESEEEMEFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
H ++ I CE V+ D + + G QEAAR+ RY F ++ ++Q + + HH D
Sbjct: 71 KHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKYQAQYVALGHHGD 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++RL R S G AG+ SY L+RP L S+ ++
Sbjct: 131 DQVETILMRLVRGSTSKGYAGIPVKRPFHGSY--------------LIRPFLAVSRAEIE 176
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ DP+N + RNR R + L + Q ++E
Sbjct: 177 DYCKKEGLTPRRDPSNEKDDYTRNRFRHHIVPLLKQENPRLHERFQQYSEMMAEDEQFLE 236
Query: 320 HVCSNLINEAV 330
+ ++ +N+ +
Sbjct: 237 ELATDALNKVM 247
>gi|196250781|ref|ZP_03149468.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16]
gi|196209731|gb|EDY04503.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16]
Length = 464
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 111/251 (44%), Gaps = 29/251 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
+ +GVSGGPDS+AL L + + E+ L+A VDH R ES+EE V
Sbjct: 21 VIVGVSGGPDSLALLHLLSSLRD----------EWKLQLVAAHVDHMFRGRESEEEMEFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
H ++ I CE V+ D + + G QEAAR+ RY F ++ ++Q + + HH D
Sbjct: 71 KHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKYQAQYVALGHHGD 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++RL R S G AG+ SY L+RP L S+ ++
Sbjct: 131 DQVETILMRLVRGSTSKGYAGIPVKRPFHGSY--------------LIRPFLAVSRAEIE 176
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
C+ DP+N + RNR R + L + Q ++E
Sbjct: 177 DYCKKEGLTPRRDPSNEKDDYTRNRFRHHIVPLLKQENPRLHERFQQYSEMMAEDEQFLE 236
Query: 320 HVCSNLINEAV 330
+ ++ +N+ +
Sbjct: 237 ELATDALNKVM 247
>gi|227533049|ref|ZP_03963098.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227189450|gb|EEI69517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 438
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 12 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 58
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 59 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 113
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 114 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRTWHGRRLVRPLLP 159
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 160 YSKAMIRSYADQHNVRFCEDSSNADPHYARNQLR 193
>gi|259501000|ref|ZP_05743902.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus iners DSM 13335]
gi|302190551|ref|ZP_07266805.1| tRNA(Ile)-lysidine synthase [Lactobacillus iners AB-1]
gi|259167694|gb|EEW52189.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus iners DSM 13335]
Length = 430
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 107/229 (46%), Gaps = 33/229 (14%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++AG K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWINNS------- 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLVRPLL FSK+++ + ++ D TN+ +RNR+R
Sbjct: 157 -------LLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|239630372|ref|ZP_04673403.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|417981712|ref|ZP_12622376.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei 12A]
gi|239526655|gb|EEQ65656.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|410521115|gb|EKP96080.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei 12A]
Length = 436
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRTWHGRRLVRPLLP 157
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 158 YSKAMIRSYADQHNVRFCEDSSNADPHYARNQLR 191
>gi|61216758|sp|Q9ZGE2.1|TILS_HELMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|3820563|gb|AAC84036.1| cell cycle protein MesJ [Heliobacillus mobilis]
Length = 470
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 34/234 (14%)
Query: 63 MTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M + FS+ + G+ KP RI + +SGG DS+ L +L F + + +F
Sbjct: 1 MNHLLQRFSQSLCRLGINKPRERIVIALSGGADSVCLLLL--------FKKV--SPQFGI 50
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRC--EIVRCDWLDGRPKQGHLQEAARDM 178
L A +HG+R +ES E+A V+ + + + E W P G EAAR +
Sbjct: 51 ELAAAHYNHGMRGKESDEDAAFVAELTNRLQVPLFLETAPLKWWQQEP--GTKMEAARRL 108
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY + Q + +AHHADD AE + + R SG+ GL+G+ F
Sbjct: 109 RYDFLSRSAEQAGARWIALAHHADDMAETVLFHMLRGSGIKGLSGIPAKRGPF------- 161
Query: 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
VRPLL F + ++ + + + W D +N S ++ RNRIR +
Sbjct: 162 -----------VRPLLPFRRKELEEFLKAEGQHWRHDSSNDSDVYTRNRIRHQI 204
>gi|418011911|ref|ZP_12651659.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei Lc-10]
gi|410551410|gb|EKQ25473.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei Lc-10]
Length = 436
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRTWHGRRLVRPLLP 157
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 158 YSKAMIRSYADQHNVRFCEDSSNADPHYARNQLR 191
>gi|417997270|ref|ZP_12637529.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei M36]
gi|418014188|ref|ZP_12653799.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei Lpc-37]
gi|410533030|gb|EKQ07718.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei M36]
gi|410554365|gb|EKQ28342.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei Lpc-37]
Length = 436
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 92/214 (42%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L K + ++ T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV--KAADLD-----------VVVATFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRAWHGRRLVRPLLP 157
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 158 YSKAMIRSYADQHNVRFCEDSSNADPHYARNQLR 191
>gi|315640556|ref|ZP_07895664.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus italicus DSM 15952]
gi|315483760|gb|EFU74248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus italicus DSM 15952]
Length = 457
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VS G DSM L L T I + + V+HGLR ES++EA ++
Sbjct: 20 VLLAVSTGVDSMVLLDLLISSVTD-----------IQRIAVVHVNHGLRPESEKEACFIN 68
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + + + +W P +++ AR RY F+K+ + VLL AHH DDQ
Sbjct: 69 AYCKEHQL--DFFQANWT---PTSSNIEANARQFRYDFFKKIMNEQGYKVLLTAHHRDDQ 123
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E +++ R+ + L G+ +SQ F++ LVRPLL + K +Y
Sbjct: 124 LETMLMKAIRDGQLTALKGIV-ASQPFANGQ-------------LVRPLLPYDKQTLYDY 169
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + ED TN+ L+ RNR+R +
Sbjct: 170 AKRRELTYFEDETNQDSLYFRNRMRQQV 197
>gi|189220437|ref|YP_001941077.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4]
gi|189187295|gb|ACD84480.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4]
Length = 307
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 38/226 (16%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV 147
G+SGG DS+ L L + +TG + + HG R++ + +A +V
Sbjct: 25 GISGGVDSIVL--LHSLVETG------------KRPIVLHFQHGWRQDEESDAKLVEETA 70
Query: 148 SDMGIRCEIVRCDWLDGR-PKQGHLQEA-ARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
++G+ ++L G+ P+ EA AR RYR FQ L++AHHADDQ
Sbjct: 71 KELGV-------EFLKGKSPRALPKNEAMARMQRYRFFQSAAENKNCFNLVLAHHADDQV 123
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E F+++L R +G G GM + + Y RPLLDF K D+ +
Sbjct: 124 ETFLMQLIRGTGSRGW-GMDRITTLGKLVVY--------------RPLLDFWKSDIIRFA 168
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISAC 311
Q N W ED TN + +RNRIR L F ++ + C
Sbjct: 169 QQRNFRWREDETNENTHLLRNRIRKELIPFLESRFSRSIKRSLWKC 214
>gi|259047954|ref|ZP_05738355.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella
adiacens ATCC 49175]
gi|259035374|gb|EEW36629.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella
adiacens ATCC 49175]
Length = 457
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 26/208 (12%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H + L VSGG DSM L A F + + D ++ V++GLR +S +E
Sbjct: 18 HQKYVLAVSGGVDSMVLLNAMALL----FEDHAK-----DHIVVAHVNYGLRAQSMDEEQ 68
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+V I EI ++ + + ++ + R+ RY F++V +HQ L++AHH
Sbjct: 69 LVRRFCKSRQIPFEI--KNFKETKEEKAS-ESILRNFRYEFFEEVLKKHQAHYLVVAHHQ 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E +++ SR S + GL+GM Q+ + ++RP L +K ++
Sbjct: 126 DDQLETILMKWSRGSTLEGLSGMKEIRQV--------------KGMTILRPFLSLNKKEL 171
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR 289
Y+ + ++ED +N S + RNR R
Sbjct: 172 YQEAETHQVPYLEDESNESDNYTRNRYR 199
>gi|418006189|ref|ZP_12646150.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei UW1]
gi|418009043|ref|ZP_12648885.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei UW4]
gi|410544351|gb|EKQ18680.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei UW1]
gi|410544794|gb|EKQ19109.1| tRNA(Ile)-lysidine synthetase [Lactobacillus casei UW4]
Length = 436
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRAWHGRRLVRPLLP 157
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 158 YSKAMIRSYADQHNVRFCEDSSNADPHYARNQLR 191
>gi|191639452|ref|YP_001988618.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BL23]
gi|385821217|ref|YP_005857604.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei LC2W]
gi|385824410|ref|YP_005860752.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BD-II]
gi|190713754|emb|CAQ67760.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus
casei BL23]
gi|327383544|gb|AEA55020.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei LC2W]
gi|327386737|gb|AEA58211.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BD-II]
Length = 436
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G PH R+ + VSGG DSM L L +A + +D ++A T DH LR ES+
Sbjct: 10 GFAPHTRVLVAVSGGVDSMVLLNLAV-----------KAAD-LDVVVA-TFDHRLRPESQ 56
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWL--DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E V + ++ +V W DG+P + AAR RY + V+
Sbjct: 57 QEQAFVV--AAAQQLQVPVVTGQWRRSDGQPTS---EAAARQARYAFLAATAAEQHAEVV 111
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ AHHADDQ E + RL+R+ L G+ D H LVRPLL
Sbjct: 112 MTAHHADDQLETILFRLARSGDPAALIGI--------------RADRAWHGRRLVRPLLP 157
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+SK + N + ED +N P + RN++R
Sbjct: 158 YSKAMIRSYADQHNVRFCEDSSNADPHYARNQLR 191
>gi|108805006|ref|YP_644943.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter
xylanophilus DSM 9941]
gi|108766249|gb|ABG05131.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter
xylanophilus DSM 9941]
Length = 444
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 125/265 (47%), Gaps = 44/265 (16%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHRV 147
VSGGPDS+AL G G+ + VDHGLR EES+ +A V
Sbjct: 28 VSGGPDSVALLRALVGL---GYEPA-----------VLHVDHGLRGEESRGDAEFVRELC 73
Query: 148 SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207
+G+RCE VR L+GR LQE AR RYR+ +V + + + H+ADD AE
Sbjct: 74 RGLGLRCE-VRSLRLEGR---AGLQERARRERYRIAGEVAGRLGASAVAVGHNADDVAET 129
Query: 208 FILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQG 267
+L L+R SG+ GL+G I C RPL++ ++ ++ +
Sbjct: 130 LLLNLARGSGLRGLSG------IPPVRGRVC------------RPLIERTRAEILGYLEA 171
Query: 268 GNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
+ + D TN P + RNR+R+ L +L + ++ +A + R + +E + +
Sbjct: 172 LGQGYRVDSTNLLPKYARNRVRLEVMPVLEELHPGAVRNMARAA-ALLREDLAALEELAA 230
Query: 324 NLINEAVTVMDQGYAVIDLEILNPS 348
++ E + G +V +L+ L P+
Sbjct: 231 GVVREEGG--EAGMSVAELDGLPPA 253
>gi|408355443|ref|YP_006843974.1| tRNA(Ile)-lysidine synthase [Amphibacillus xylanus NBRC 15112]
gi|407726214|dbj|BAM46212.1| tRNA(Ile)-lysidine synthase [Amphibacillus xylanus NBRC 15112]
Length = 467
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 34/220 (15%)
Query: 79 LKPHHRIALGVSGGPDSMALC--VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EE 135
+KP+ +I +GVSGGPDSMAL +LT K FN + L+A+TV+HGLR E
Sbjct: 16 IKPNSKIMIGVSGGPDSMALLHYLLT---KRSLFNLD---------LIAVTVEHGLRGEA 63
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH---LQEAARDMRYRLFQKVCIQHQI 192
S ++ V + I+ E + + + ++ H QEA+R +RY+ F ++ +Q
Sbjct: 64 SLQDVEYVRNYCLQNQIQFETKQINVKEY--QKAHKLGTQEASRILRYQAFNQLMKSYQA 121
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
L +AHHADDQ E +RL+R + + L G+ + + FS+ +L+RP
Sbjct: 122 DYLALAHHADDQVETVFMRLTRGTHLDSLQGIK-NKRDFSTG-------------VLIRP 167
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L +K+ + + C+ D +N + RN R+ +
Sbjct: 168 FLSITKETIEQYCEQQGIIPRRDQSNEQDTYTRNYFRLHV 207
>gi|374301103|ref|YP_005052742.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis
Bay]
gi|332554039|gb|EGJ51083.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis
Bay]
Length = 340
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 96/211 (45%), Gaps = 29/211 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + +SGG DS AL + A LLA VDHGLR ES ++A
Sbjct: 37 RLLVALSGGADSTALL----------YCLRYLAPRMCISLLAAHVDHGLRPESGQDAAYC 86
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + + D + G KQ + +EA R RY FQK + +LL AHH
Sbjct: 87 RELCAAQNVPLYEAKLD-VSGLAKQSGMGIEEAGRHARYDFFQKTLVGQNADLLLTAHHL 145
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+D AE ++RL R +G LAGM +D +N L+RPLL ++
Sbjct: 146 NDLAEDALMRLIRGTGWPELAGM------------PAYDPQRN----LLRPLLLTPGTNL 189
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ W EDP+N P F+RNR+R+ +
Sbjct: 190 REFLTNIGASWREDPSNTDPAFLRNRVRLDI 220
>gi|126667577|ref|ZP_01738547.1| predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Marinobacter sp. ELB17]
gi|126628003|gb|EAZ98630.1| predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Marinobacter sp. ELB17]
Length = 212
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 27/214 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H R+ + SGG DS L L A L A+ ++H L+ + E
Sbjct: 23 LPQHDRLCIAFSGGLDSSLLLHLFAAITPASI-----------ALSALHINHQLQPNAAE 71
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ + + +V G L++AAR RY +F++ ++ LL+A
Sbjct: 72 VDAFCRDVCARLSVPLRVVSVTVPVKAEGVGGLEQAARAARYGVFEQYLRADEL--LLLA 129
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQ E + RL R SGV GLAGM F+ + + L RPLL+FS+
Sbjct: 130 HHGDDQLETVLFRLFRGSGVAGLAGMPFTRALCARA--------------LARPLLEFSR 175
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ +G W+EDP+N F RN +R S+
Sbjct: 176 AQLEAWAEGAGLPWMEDPSNSDQRFDRNYLRNSV 209
>gi|392947778|ref|ZP_10313404.1| tRNA(Ile)-lysidine synthetase [Lactobacillus pentosus KCA1]
gi|392436990|gb|EIW14888.1| tRNA(Ile)-lysidine synthetase [Lactobacillus pentosus KCA1]
Length = 448
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+RR+A AGL P + + VS G DSM L L Q L+
Sbjct: 5 QKFNRRLAAAGLLSPQVTVVVAVSTGVDSMVLLRLLQQLPVTERPQ----------LIVA 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQK 185
V+H LR +S+ EA + + ++ DW + P+ G ++ A R RY+ F +
Sbjct: 55 HVNHHLRTQSRTEAAYLQRYCQTHQLDLKL--ADWQVTNHPEHG-VEAAGRQFRYQFFTR 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +L AHHA+DQ E ++++L+R + L G+A +S+ F+
Sbjct: 112 VMQTTGAKAVLTAHHANDQVETYLMKLARGGDIAQLTGIA-ASRPFAGGQ---------- 160
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LVRPLLD+SK + + + ED TN+ RNRIR
Sbjct: 161 ---LVRPLLDWSKAALRDYAAQHDVTYFEDATNQDVQLTRNRIR 201
>gi|345888508|ref|ZP_08839590.1| hypothetical protein HMPREF0178_02364 [Bilophila sp. 4_1_30]
gi|345040635|gb|EGW44873.1| hypothetical protein HMPREF0178_02364 [Bilophila sp. 4_1_30]
Length = 384
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 110/255 (43%), Gaps = 35/255 (13%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G+ PHH + + SGG DS AL V+ + G + L+ +DH LR ES
Sbjct: 74 GVSPHH-VIVAFSGGADSTALAVIL---RCLGVS-----------LVLAHLDHRLRPESG 118
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EEA +G+ C + R D R + L++A R RY F + ++
Sbjct: 119 EEAESARRFAERLGVPCMVRRVDVEALARSEGIGLEDAGRRARYAFFDSALRSGRAEWVV 178
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
HH DD +E ++RL R SG GL GM D H L+RPLL
Sbjct: 179 TGHHLDDLSEDVLMRLVRGSGWPGLGGMKAV-------------DPARH---LLRPLLGT 222
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRR 313
S+ ++ + DW+ED +NRS F RNR+R + L + SF + + R
Sbjct: 223 SRAELEAFLRSLGVDWIEDASNRSDAFRRNRMRNHVIPLLKAENPSFSRSTRTLWELARE 282
Query: 314 TRSYVEHVCSNLINE 328
Y + V + + +
Sbjct: 283 DEHYWDEVLAPVFAQ 297
>gi|312874299|ref|ZP_07734331.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d]
gi|311090172|gb|EFQ48584.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d]
Length = 430
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 107/229 (46%), Gaps = 33/229 (14%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++AG K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESKIITKYCQQYQLQLE--ETKWDAPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNS------- 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLVRPLL FSK+++ + +V D TN+ +RNR+R
Sbjct: 157 -------LLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQENETLRNRLR 198
>gi|365873795|ref|ZP_09413328.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio velox DSM 12556]
gi|363983882|gb|EHM10089.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio velox DSM 12556]
Length = 469
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 31/209 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+A+ G + G I G VDHG+RE S ++ V
Sbjct: 50 KMIVAVSGGGDSVAM---------GALLRRFWGGTQIWG----HVDHGIREVSHRDSQFV 96
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
GIRC + R + R K ++ AAR +R+ + + G + AH DD
Sbjct: 97 ESLARAWGIRCFVARRNVPCERLKGESIEMAARRVRHEFLEGLARSEGCGYVATAHSMDD 156
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E +L L+R +G+ GLAGM + VRP++ + ++ +
Sbjct: 157 QVETVMLNLTRGAGIWGLAGMPHRRGPW------------------VRPVIAMRRSELRR 198
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q +WVED TN+S +VRNR+R+ L
Sbjct: 199 YLQLLGVEWVEDETNQSRDYVRNRVRLDL 227
>gi|416233973|ref|ZP_11629571.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 12P80B1]
gi|416245599|ref|ZP_11634582.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC8]
gi|421780620|ref|ZP_16217108.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4]
gi|326565650|gb|EGE15813.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 12P80B1]
gi|326572293|gb|EGE22288.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC8]
gi|407812308|gb|EKF83094.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4]
Length = 457
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 34/241 (14%)
Query: 57 VEYLTD--MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFN 111
V+ +TD +T AF L H ++ L SGG DS+AL C L +
Sbjct: 4 VKLMTDDILTSLSSAFDE----LALPAHAKLYLACSGGRDSLALAYACFLL-------YR 52
Query: 112 QNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL 171
Q G+ I + V HG + + +V + G C+I+R + + H
Sbjct: 53 Q----GKIIRLPTILHVHHGWQAANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH- 105
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
ARD RY+ F + +Q VL++AHHA+DQAE ++RL +G+ GL+GM
Sbjct: 106 ---ARDARYQAFG--LVMNQGDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ--- 157
Query: 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS 291
A + H D +I L RP L S++ + + +V+D TN P + R RIR
Sbjct: 158 ---AKTVHTDEAAKTITLWRPWLKISRNQISQFANAHALPYVDDITNTDPAYARGRIRQD 214
Query: 292 L 292
+
Sbjct: 215 I 215
>gi|424779787|ref|ZP_18206679.1| tRNA(Ile)-lysidine synthetase [Catellicoccus marimammalium
M35/04/3]
gi|422843537|gb|EKU27967.1| tRNA(Ile)-lysidine synthetase [Catellicoccus marimammalium
M35/04/3]
Length = 432
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+ L +SGG DSMAL L A + I + H LR+E+++EA ++
Sbjct: 2 KFLLAISGGSDSMALWELFAQLAPNSYG-------------IIHIQHHLRKEAEQEAKMI 48
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ R DW P + +++ AR+ RY FQK + + +L AHH DD
Sbjct: 49 EALCQKRDV--PFYRYDWT---PSENNIEAKAREFRYACFQKTMQEEEYDILCTAHHQDD 103
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E + R+ R + + G+ + Y L RPLL FSK+++
Sbjct: 104 QIETIMQRIFRGTHLWHCTGIEELREFGEGY--------------LWRPLLSFSKEELKT 149
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ N+ + ED +N + RNRIR
Sbjct: 150 WLESQNQQYFEDESNTDLHYQRNRIR 175
>gi|258544242|ref|ZP_05704476.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826]
gi|258520480|gb|EEV89339.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826]
Length = 436
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 90/205 (43%), Gaps = 31/205 (15%)
Query: 87 LGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
L +SGG DSMAL LT LLA V+HG +
Sbjct: 23 LALSGGRDSMALLQALTL-----------RRARLAAPLLACYVNHGWSAAGADWGAFCQR 71
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+ + CEIV+ DW DG G+ + AR +RY+ GVLL AHH DDQA
Sbjct: 72 EATARDVPCEIVKLDWADG---GGNAEARARTLRYQALAARLPPR--GVLLTAHHRDDQA 126
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E FIL+ R SG+ GLA M ++A H RPLLD + +
Sbjct: 127 ETFILQALRGSGLDGLAAMPAR----RAFAGGEH----------WRPLLDVPRAAIEAFV 172
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRM 290
+++DP+N P + RNR+R+
Sbjct: 173 AAEGVAYLDDPSNADPHYARNRLRL 197
>gi|403743462|ref|ZP_10953046.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122706|gb|EJY56905.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus hesperidum
URH17-3-68]
Length = 511
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+GVSGG DSM L L G + + G + VDHGLR S E+A V+H+
Sbjct: 65 IGVSGGVDSMVLLHLCHRATQG-------SEPLLGGFSVVHVDHGLRPSSAEDAKFVTHQ 117
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ +G+ CEIV D P ++ AAR RY H GV L+AHH+ DQ E
Sbjct: 118 CARLGVACEIVPVQVKD--PCGEGIEAAARRARYEALLTRTRLHHHGVCLVAHHSRDQLE 175
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
F++R R + + GL M + + L RPLL + ++ + +
Sbjct: 176 TFVMRWLRGTSLAGLGAMRAVTM--------------REGVRLFRPLLQTGRSEIEQYAK 221
Query: 267 GGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ ED TN F RNRIR L
Sbjct: 222 AWGIPFREDETNADTRFFRNRIRHEL 247
>gi|27262508|gb|AAN87535.1| cell cycle protein MesJ [Heliobacillus mobilis]
Length = 308
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 34/234 (14%)
Query: 63 MTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M + FS+ + G+ KP RI + +SGG DS+ L +L F + + +F
Sbjct: 1 MNHLLQRFSQSLCRLGINKPRERIVIALSGGADSVCLLLL--------FKKV--SPQFGI 50
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRC--EIVRCDWLDGRPKQGHLQEAARDM 178
L A +HG+R +ES E+A V+ + + + E W P G EAAR +
Sbjct: 51 ELAAAHYNHGMRGKESDEDAAFVAELTNRLQVPLFLETAPLKWWQQEP--GTKMEAARRL 108
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY + Q + +AHHADD AE + + R SG+ GL+G+ F
Sbjct: 109 RYDFLSRSAEQAGARWIALAHHADDMAETVLFHMLRGSGIKGLSGIPAKRGPF------- 161
Query: 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
VRPLL F + ++ + + + W D +N S ++ RNRIR +
Sbjct: 162 -----------VRPLLPFRRKELEEFLKAEGQHWRHDSSNDSDVYTRNRIRHQI 204
>gi|329920372|ref|ZP_08277104.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G]
gi|328936048|gb|EGG32501.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G]
Length = 430
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 107/229 (46%), Gaps = 33/229 (14%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++AG K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWINNS------- 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLVRPLL FSK+++ + ++ D TN+ +RNR+R
Sbjct: 157 -------LLVRPLLSFSKEELLVYAKKRKLVYIVDYTNQENETLRNRLR 198
>gi|282882540|ref|ZP_06291161.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B]
gi|281297682|gb|EFA90157.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B]
Length = 440
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 126/297 (42%), Gaps = 59/297 (19%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ + R+ L +SGGPDSM L K EF LL V+HG+RE +K
Sbjct: 15 IEKNDRLLLAISGGPDSMYLLYNVIDLKK----------EFNLDLLVCHVNHGIRENAKN 64
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLL 196
+ N V I I + ++ K+ ++ +EA R +RY F++ +I L
Sbjct: 65 DENFVIDICKKFNINYNIKHVN-MNEYAKENNMSAEEAGRFLRYEFFKENADGRKI---L 120
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
AH+ +DQAE + R+ R +GV GLAG + F++ I VRP+L+
Sbjct: 121 TAHNLNDQAETILTRIFRGTGVKGLAGILQFNNNI-------------------VRPILN 161
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----AC 311
+ + N +V D TN + RNRIR+ L F + ++
Sbjct: 162 IPRYQIEDYLNKNNLKYVIDETNLKSDYTRNRIRIELIPYIEKYFNPNIVNTLNRLSINA 221
Query: 312 RRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQ 368
R + Y++ +I+ E N K +D F +L + +FICQ
Sbjct: 222 REEKIYLD------------------TIIEKEYRNSFK-DDCFNVTYLKTLDKFICQ 259
>gi|421893882|ref|ZP_16324375.1| tRNA(Ile)-lysidine synthetase [Pediococcus pentosaceus IE-3]
gi|385273367|emb|CCG89747.1| tRNA(Ile)-lysidine synthetase [Pediococcus pentosaceus IE-3]
Length = 456
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 31/213 (14%)
Query: 123 LLAITVDHGLREESKEEANIV-----SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
L+ V+H LRE+S EE + H+++ M DW + Q ++ AAR+
Sbjct: 49 LIVAHVNHQLREQSIEEERFLHKWCRQHQITFM-------ETDWPKSQHPQHGVEAAARE 101
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY F++V Q VLL AH+AD+QAE F++++ R + L G+ +
Sbjct: 102 FRYTFFKQVMHDQQAQVLLTAHNADEQAENFVMQVIRGGWLNQLNGIPERRTFAQGW--- 158
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L+RP L F+K + + Q W ED TNR+ F+RNR+R +
Sbjct: 159 -----------LIRPFLKFTKQFLIETAQENKLRWFEDQTNRTTEFLRNRVRNEI----I 203
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAV 330
+F+ E V+ + + + SNL+++ V
Sbjct: 204 PAFRKENPRVVEHIQHYQDQLLE-QSNLVDQVV 235
>gi|378727614|gb|EHY54073.1| cell cycle protein MesJ [Exophiala dermatitidis NIH/UT8656]
Length = 601
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 103/251 (41%), Gaps = 56/251 (22%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL----LAITVDHGLREESKEE 139
RI + VSGGPDSMAL L E L LA V+H R ES++E
Sbjct: 32 RIGVCVSGGPDSMALAYLLR-----------RVPEIDPSLRIKPLAFIVNHNARAESRKE 80
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLI 197
A+ VS + + I ++ DW +G + AR RYRL +Q I L +
Sbjct: 81 ADFVSRYLEKLDIESLVLDIDWGNGVDPATLPDFEMQARQARYRLVATAALQRNIRDLFL 140
Query: 198 AHHADDQAELFILRLSRN--SGVLGLAGMAFSSQI-----------------FSSYAYSC 238
HH DDQ E ++RL RN + LGL GMA S I + +
Sbjct: 141 GHHQDDQVETILMRLIRNPSTSFLGLQGMAEESAIPCCEDIRGAHEVEQYEPLPDWLFHI 200
Query: 239 HDDLKNHS-------------------ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279
+ + N S + + RPLL F K + + C+ + +D TN
Sbjct: 201 NGTVSNVSESKRGINFAKQVTVSHKGGLRMHRPLLQFPKSRLIQTCKDNGVIYQKDKTND 260
Query: 280 SP-LFVRNRIR 289
P L +RN +R
Sbjct: 261 DPTLTLRNAVR 271
>gi|163854237|ref|YP_001642280.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1]
gi|163665842|gb|ABY33209.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1]
Length = 342
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 91/200 (45%), Gaps = 31/200 (15%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P L VSGGPDS AL + AG D TVDH LR S +E
Sbjct: 22 EPARPALLAVSGGPDSTAL-----------MHAAARAGR--DLFRVATVDHALRPGSADE 68
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V +++G+ I+ D P+ G +Q +AR RYRL + G++L A
Sbjct: 69 ARAVGRLATELGLIHTILTWDA----PRHGSRIQASARGARYRLLTDHAARIGAGLILTA 124
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H DDQAE ++RL SG GLAGM ++ + I LVRP L SK
Sbjct: 125 HTLDDQAETVLMRLIAGSGPSGLAGM-REERVLAP------------GIRLVRPFLSLSK 171
Query: 259 DDMYKICQGGNRDWVEDPTN 278
D+ C+ ++ DP+N
Sbjct: 172 ADLVAYCEMHRLPFLRDPSN 191
>gi|119714705|ref|YP_921670.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614]
gi|119535366|gb|ABL79983.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614]
Length = 321
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 99/226 (43%), Gaps = 42/226 (18%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLT------AGWKTGGFNQNGEAGEFIDGLLAI 126
R A+A + P + + SGG DS+AL T AGW+ G
Sbjct: 15 RRALAHVDPGRTVVVACSGGADSLALLAATVFEGRRAGWRVVG----------------A 58
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
TVDHGL+ S + A V +++ +G + ++ QG + AAR RY + ++
Sbjct: 59 TVDHGLQPGSADHAAHVVRQMAALGADETVAATVHVEA-AGQGP-EAAARQARYAVLDQL 116
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ +L+ H DDQAE +L L+R SG LAGM S F
Sbjct: 117 AERFDADAVLLGHTRDDQAETVLLGLARGSGGRSLAGMRRSFDRF--------------- 161
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
VRPLLD S+ D CQ ++ DP N P F R R+R S+
Sbjct: 162 ---VRPLLDLSRADTATACQVAGIEFWSDPHNEDPAFTRVRVRRSV 204
>gi|386067673|ref|YP_005982977.1| hypothetical protein NCGM2_4769 [Pseudomonas aeruginosa NCGM2.S1]
gi|348036232|dbj|BAK91592.1| hypothetical protein NCGM2_4769 [Pseudomonas aeruginosa NCGM2.S1]
Length = 442
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQASLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|56961886|ref|YP_173608.1| cell-cycle protein [Bacillus clausii KSM-K16]
gi|61216430|sp|Q5WAE0.1|TILS_BACSK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|56908120|dbj|BAD62647.1| cell-cycle protein [Bacillus clausii KSM-K16]
Length = 469
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 36/216 (16%)
Query: 85 IALGVSGGPDSMALCVLTAG----WKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
+ + VSGGPDSMAL + A WK L + V+H LR EES ++
Sbjct: 21 VLVAVSGGPDSMALLAIMANLREKWKLN--------------LFGVHVNHRLRGEESNKD 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLI 197
A +V + +G+ C + D + + H+ Q+AAR +RY++FQ + VLL
Sbjct: 67 AELVQSFSARLGVPCNVKDVD-VAAFKAEHHVGTQQAARALRYQVFQGEMERVHATVLLT 125
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHH DD+ E ++L+R + L G+A +++ F++ +L RPLL+ +
Sbjct: 126 AHHGDDEVETAFMKLTRGTTPLTKLGIA-ATRPFANG-------------VLARPLLEET 171
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
K + C + D +N S + RNR RM++
Sbjct: 172 KRSIVAYCHEKAIPYRIDQSNFSDAYTRNRFRMNMA 207
>gi|290889686|ref|ZP_06552775.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429]
gi|419759304|ref|ZP_14285609.1| hypothetical protein AWRIB304_1894 [Oenococcus oeni AWRIB304]
gi|419857139|ref|ZP_14379849.1| hypothetical protein AWRIB202_964 [Oenococcus oeni AWRIB202]
gi|419858230|ref|ZP_14380908.1| hypothetical protein AWRIB129_223 [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421183800|ref|ZP_15641229.1| hypothetical protein AWRIB318_40 [Oenococcus oeni AWRIB318]
gi|421187458|ref|ZP_15644817.1| hypothetical protein AWRIB419_204 [Oenococcus oeni AWRIB419]
gi|421190501|ref|ZP_15647802.1| hypothetical protein AWRIB422_1673 [Oenococcus oeni AWRIB422]
gi|421192440|ref|ZP_15649706.1| hypothetical protein AWRIB548_1910 [Oenococcus oeni AWRIB548]
gi|421193264|ref|ZP_15650513.1| hypothetical protein AWRIB553_872 [Oenococcus oeni AWRIB553]
gi|421195663|ref|ZP_15652867.1| hypothetical protein AWRIB568_1653 [Oenococcus oeni AWRIB568]
gi|421196403|ref|ZP_15653592.1| hypothetical protein AWRIB576_485 [Oenococcus oeni AWRIB576]
gi|290480683|gb|EFD89318.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429]
gi|399903999|gb|EJN91462.1| hypothetical protein AWRIB304_1894 [Oenococcus oeni AWRIB304]
gi|399968437|gb|EJO02870.1| hypothetical protein AWRIB318_40 [Oenococcus oeni AWRIB318]
gi|399968666|gb|EJO03098.1| hypothetical protein AWRIB419_204 [Oenococcus oeni AWRIB419]
gi|399969557|gb|EJO03891.1| hypothetical protein AWRIB548_1910 [Oenococcus oeni AWRIB548]
gi|399969936|gb|EJO04250.1| hypothetical protein AWRIB422_1673 [Oenococcus oeni AWRIB422]
gi|399972468|gb|EJO06668.1| hypothetical protein AWRIB553_872 [Oenococcus oeni AWRIB553]
gi|399975304|gb|EJO09361.1| hypothetical protein AWRIB568_1653 [Oenococcus oeni AWRIB568]
gi|399977603|gb|EJO11583.1| hypothetical protein AWRIB576_485 [Oenococcus oeni AWRIB576]
gi|410498204|gb|EKP89660.1| hypothetical protein AWRIB202_964 [Oenococcus oeni AWRIB202]
gi|410499154|gb|EKP90591.1| hypothetical protein AWRIB129_223 [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 299
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 26/209 (12%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ L +SGG DS L L +++ + L VDH LR +S E +
Sbjct: 22 QKLLLAISGGVDSTVLADLLFKYESNPRSH----------LFLAHVDHQLRVDSANETKL 71
Query: 143 VSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + ++ G+ C + W L+ P G +++AAR RY ++++ ++ +++A HA
Sbjct: 72 IDDQFANRGL-C-VFHEKWPLEKHPHSG-IEDAARKFRYDFYKRMALKVGARKIILAQHA 128
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE +L++ R + ++ M +S + K+ I +VRPLL+ K ++
Sbjct: 129 DDQAETTLLKIIRGADWQTVSAMEWSRPL-----------EKDSPIEVVRPLLNVEKSEI 177
Query: 262 YKICQGGNRDWVEDPTNRSPLFV-RNRIR 289
Y + + W+ED TN+ P + RN+IR
Sbjct: 178 YDYAEKNHLKWIEDSTNKDPDYTSRNQIR 206
>gi|150014990|ref|YP_001307244.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052]
gi|149901455|gb|ABR32288.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052]
Length = 468
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 37/271 (13%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLL 124
YR+ S +KP+ +I + +SGGPDS +C+L + E E ++ +
Sbjct: 2 YRKVLSYIKDNNLIKPNDKILIALSGGPDS--ICLLNVLF---------ELREKLNISIA 50
Query: 125 AITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYR 181
A ++H LR E++ E+ V + +DMGI+C + R D ++ K+ L + A R+ RY
Sbjct: 51 AAHLNHLLRGEDAFEDERYVINTCNDMGIKCFVKRVD-INAYSKESKLSSEMAGRNARYD 109
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
F ++ + + AH+A+DQAE + RL R +G+ GL G+ S DD
Sbjct: 110 FFDEILEKEGFNKIATAHNANDQAETVLFRLMRGTGLEGLGGIRAS-----------RDD 158
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK 301
++RP+L S++++ + N + D TN ++ RN+IR+ + +F
Sbjct: 159 ------KIIRPILCLSREEVENYVKLKNLNPRIDKTNFEKIYNRNKIRLDILPYMKENFN 212
Query: 302 SE----LQAVISACRRTRSYVEHVCSNLINE 328
+ L + + ++ ++E + + L N+
Sbjct: 213 EDIVQTLNRMSTLLQKDNEFLEKLSAGLYNK 243
>gi|255657510|ref|ZP_05402919.1| putative ATPase [Clostridium difficile QCD-23m63]
gi|296452818|ref|ZP_06894505.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Clostridium difficile NAP08]
gi|296879930|ref|ZP_06903902.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07]
gi|296258366|gb|EFH05274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Clostridium difficile NAP08]
gi|296429044|gb|EFH14919.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07]
Length = 462
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 129/266 (48%), Gaps = 33/266 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGLSGGPDSVCLLHVLNRLKK----------DFNIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS DMGI + + +G L+E AR +RY +F ++ + + + I H+
Sbjct: 71 VSKLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNL 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQAE ++R+ R +G+ GL G+ + +C ++RP+LD + ++
Sbjct: 131 NDQAETVMMRIMRGTGLKGLKGIDYIRD-------NC----------IIRPILDVERSEI 173
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVI---SACRRTRSY 317
+ C+ N + D TN ++ RN+IR+ L +F S +++++ ++ + Y
Sbjct: 174 EEYCEAYNLNPRIDKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDY 233
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLE 343
+E E + ++G+ I+L+
Sbjct: 234 IEKEAEAKFREVSNIKEKGFVEINLD 259
>gi|392982638|ref|YP_006481225.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa DK2]
gi|416854811|ref|ZP_11911141.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 138244]
gi|419754770|ref|ZP_14281128.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PADK2_CF510]
gi|334843560|gb|EGM22147.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 138244]
gi|384398588|gb|EIE44993.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PADK2_CF510]
gi|392318143|gb|AFM63523.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa DK2]
gi|453047355|gb|EME95069.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PA21_ST175]
Length = 442
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQASLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|149377460|ref|ZP_01895202.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893]
gi|149358227|gb|EDM46707.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893]
Length = 416
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 26/190 (13%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR--PK---QGHLQEAARDMR 179
AI ++H L+ + + ++G+ +I R + R P+ G ++EAAR+ R
Sbjct: 22 AIHINHQLQPNADDAERFCEDICRELGVPLDIRRVI-VSSRETPEIDTSGGVEEAARNAR 80
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y++F+++ ++ LL+AHH DDQAE + RL R +GV+GL GM + + + Y
Sbjct: 81 YQVFEEILAPGEL--LLMAHHGDDQAETVLFRLLRGTGVVGLGGMPITRPLGAGRLY--- 135
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCS 299
RPLLDFS+ +++ +W+EDP+N F RN +R S+ L
Sbjct: 136 -----------RPLLDFSRAELHAWAAEHGIEWMEDPSNIDERFDRNFLRASIFPL---- 180
Query: 300 FKSELQAVIS 309
KS ++IS
Sbjct: 181 LKSRWPSLIS 190
>gi|429762463|ref|ZP_19294853.1| tRNA(Ile)-lysidine synthetase [Anaerostipes hadrus DSM 3319]
gi|429181708|gb|EKY22863.1| tRNA(Ile)-lysidine synthetase [Anaerostipes hadrus DSM 3319]
Length = 480
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 29/206 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I +GVSGG DS+ L ++ N+ E+ + + ++H +R E+ ++ V
Sbjct: 32 IIIGVSGGADSVYLLLI--------LNELRESMNLT--ITVVHINHMIRREAVDDQKFVQ 81
Query: 145 HRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I C+I D + ++ L+EA R RY F K ++ + IAHH +D
Sbjct: 82 DLCGQLSIPCKIFEIDVKQIAKREKMSLEEAGRKARYDAFAKTMKKYNADKIAIAHHQND 141
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE F+ R+ R +G+ G M + L+RPLL K+++ K
Sbjct: 142 QAETFLYRVVRGTGIYGAGAM------------------REKDGNLIRPLLCVKKEEIVK 183
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + WVED +N+ F RN+IR
Sbjct: 184 YLKEAGQVWVEDASNQDDAFARNQIR 209
>gi|300814650|ref|ZP_07094901.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300511269|gb|EFK38518.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 440
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 36/217 (16%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ + R+ L +SGGPDSM L K EF LL V+HG+RE +K
Sbjct: 15 IEKNDRLLLAISGGPDSMYLLYNVIDLKK----------EFNLDLLVCHVNHGIRENAKN 64
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLL 196
+ N V I I + ++ K+ ++ +EA R +RY F++ +I L
Sbjct: 65 DENFVIDICKKFNINYNIKHVN-MNEYAKENNMSAEEAGRFLRYEFFKENADGRKI---L 120
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAG-MAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
AH+ +DQAE + R+ R +GV GLAG + F++ I VRP+L+
Sbjct: 121 TAHNLNDQAETILTRIFRGTGVKGLAGILQFNNNI-------------------VRPILN 161
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + N +V D TN + RNRIR+ L
Sbjct: 162 IPRYQIEDYLNKNNLKYVIDETNLKSDYTRNRIRIEL 198
>gi|296113823|ref|YP_003627761.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4]
gi|295921517|gb|ADG61868.1| tRNA-lysidine synthetase [Moraxella catarrhalis BBH18]
Length = 451
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-----------HRQGKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L RP L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
S++ + + + +V+D TN P + R RIR +
Sbjct: 172 KISRNQISQFAKAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|217965695|ref|YP_002351373.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23]
gi|386006948|ref|YP_005925226.1| bifunctional protein TilS/HprT [Listeria monocytogenes L99]
gi|386025528|ref|YP_005946304.1| putative tRNA(ile)-lysidine synthase (N-terminal region)/ putative
hypoxanthine/guanine phosphoribosyltrasferase
(C-terminal region), partial [Listeria monocytogenes M7]
gi|217334965|gb|ACK40759.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23]
gi|307569758|emb|CAR82937.1| bifunctional protein TilS/HprT [Listeria monocytogenes L99]
gi|336022109|gb|AEH91246.1| putative tRNA(ile)-lysidine synthase (N-terminal region)/ putative
hypoxanthine/guanine phosphoribosyltrasferase
(C-terminal region) [Listeria monocytogenes M7]
Length = 648
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 27/211 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS+AL L W + + + + ++H LRE + E N+V
Sbjct: 23 KLLVAVSGGPDSLAL--LHFLWNSDLVPK--------EAISVAHLNHHLRENAANEQNVV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
GI I D + R + Q ++E AR +RY F+KV + I L +AHHA
Sbjct: 73 ETFCERHGIPFYIEEVD-IKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL R S +G +G+ ++ YA +RP L +K ++
Sbjct: 132 DDQIETILMRLVRGSASIGWSGIQPKREVKGGYA--------------IRPFLPITKAEI 177
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q + D +N S + RNR R L
Sbjct: 178 IAYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|164686638|ref|ZP_02210666.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM
16795]
gi|164604367|gb|EDQ97832.1| tRNA(Ile)-lysidine synthetase [Clostridium bartlettii DSM 16795]
Length = 462
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 119/246 (48%), Gaps = 41/246 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANI 142
+I LG+SGGPDS+ L + K +F + A ++H +R E++++A
Sbjct: 21 KIVLGISGGPDSVCLLHILNRLKE----------QFDIEIYAAHLNHQIRGIEAQKDALY 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPK-----QGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
V+ +MGI+ + D PK + +++ AR +RY +F ++ + + I
Sbjct: 71 VTRLCEEMGIKYFVRSIDV----PKYCQENKLSIEDGARKLRYEMFFEIMQRTHANKIAI 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AH+ +DQAE ++R+ R +G+ GL G+ + D+ +++RP+LD
Sbjct: 127 AHNVNDQAETILMRIMRGTGLHGLRGIEY-----------IRDN------VIIRPILDIE 169
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI----SACRR 313
+ ++ C+ N + D TN P++ RN+IR+ L +F S + I S+ +
Sbjct: 170 RSEIESYCEQYNLNPRIDQTNLDPIYTRNKIRLKLLPYMQENFNSNVTKAIVRMSSSIKE 229
Query: 314 TRSYVE 319
Y+E
Sbjct: 230 DSDYIE 235
>gi|114706794|ref|ZP_01439694.1| PP-loop family protein [Fulvimarina pelagi HTCC2506]
gi|114537742|gb|EAU40866.1| PP-loop family protein [Fulvimarina pelagi HTCC2506]
Length = 458
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 102/222 (45%), Gaps = 28/222 (12%)
Query: 76 MAGLKPH-HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
+AG P R+ + VSGGPDS+AL VL + + + A TV+HGLR
Sbjct: 30 LAGHTPSPQRLLIAVSGGPDSLALLVLASRLPN-----------LVFAVHAATVNHGLRR 78
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
E+ EA V+ +G+ E + + DG G+LQ AAR+ RYRL + +
Sbjct: 79 EADMEAAHVAEVSQRLGVPHETLTWEGWDG---SGNLQAAAREARYRLLAEEARRIGASA 135
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+L AHH DQ E + L R LAGM S DL+ + LVRP L
Sbjct: 136 ILTAHHRGDQIETVLQALERGDRENRLAGMRASR------------DLEPR-LTLVRPFL 182
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 296
+ + ++ + V+DP+N F R R R ++ +S
Sbjct: 183 EIPAEQLWAVLAEAGIASVDDPSNADRRFTRVRHRHAIAGMS 224
>gi|365154873|ref|ZP_09351271.1| tRNA(Ile)-lysidine synthetase [Bacillus smithii 7_3_47FAA]
gi|363628984|gb|EHL79677.1| tRNA(Ile)-lysidine synthetase [Bacillus smithii 7_3_47FAA]
Length = 471
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 30/213 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF--IDGLLAITVDHGLR-EESKEEA 140
+I +GVSGGPDS++L A +F ID L A+ +DH R +ES EE
Sbjct: 23 KIVVGVSGGPDSLSLLHYLA-----------RKRDFYGID-LFAVHLDHMFRGQESYEEL 70
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDG-RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + I C R + + R LQE AR +RY++FQ+ Q L +AH
Sbjct: 71 LFVEEFCKEFHIPCLSKRINVSEIIRDNGTGLQETARMVRYQVFQQAMTQFAANKLALAH 130
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
H DDQ E ++RL+R + G AG+ + H+ ++RPLL +K+
Sbjct: 131 HGDDQVETILMRLTRGTSGKGRAGIPYLRSF--------------HNGWIIRPLLGITKE 176
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ C + DP+N + RNR R+ +
Sbjct: 177 EILAYCDFYRLNPRIDPSNSKGAYTRNRFRLEV 209
>gi|163847595|ref|YP_001635639.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl]
gi|222525450|ref|YP_002569921.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl]
gi|163668884|gb|ABY35250.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl]
gi|222449329|gb|ACM53595.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl]
Length = 474
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 105/238 (44%), Gaps = 31/238 (13%)
Query: 84 RIALGVSGGPDSMAL----CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKE 138
R+ + VSGG DS+AL C L + GG + +DHGLR ES
Sbjct: 20 RLLVAVSGGSDSLALLHMLCTLH---RAGGPTP-----------IVAHLDHGLRGAESAA 65
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+A+ V+ + G+R + R G AR RY + + +L+A
Sbjct: 66 DADFVAATATAWGVRAIVGRAHL-----PPGTTPAEARTARYTFLATTALAEHVDAVLVA 120
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD--DLKNHSILLVRPLLDF 256
H ADDQAE ++ L R +G GL GM + +S +A + + H L+RPLL
Sbjct: 121 HQADDQAETVLMHLLRGAGPAGLRGMRARVE-WSEWAAALIESGQAPPHGPPLLRPLLTV 179
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT 314
S+ ++ C +DPTNR+ +VR RIR L SE + +A RT
Sbjct: 180 SRSELAAYCAAHQLTPRDDPTNRNLHYVRARIRHVL----LPQLASENPQITAALTRT 233
>gi|119174426|ref|XP_001239574.1| hypothetical protein CIMG_09195 [Coccidioides immitis RS]
Length = 812
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 116/287 (40%), Gaps = 56/287 (19%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148
VSGGPDSMAL L G + FI VDH RE+S +EA V+ +
Sbjct: 44 VSGGPDSMALAHLCRRLIVEGHIPDLNVKAFI-------VDHKAREKSTDEALKVAGWIK 96
Query: 149 DMGIRCEIVRCDWLDGRPKQGHL---QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
MG++ +++ W +G L + AR +RY+ C+ I L + HH DD
Sbjct: 97 SMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHRDDNV 156
Query: 206 ELFILRLSRNSGVLGLA---------------GMAFSSQIFSSYAYSC---------HDD 241
E +LRL++ G GLA G++ S I S A S +
Sbjct: 157 ETALLRLAQGHGRFGLAGFDSVSPIPECHSLWGVSQSGDITSIEAISADRTPRMAPIKPN 216
Query: 242 LKNHS-------------------ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRS-P 281
L N+ + + RP F K + C+ +V DPTN
Sbjct: 217 LMNNEGARAPLPQPDSSLYTATGGVYIFRPFRSFPKARLEATCRVARVPFVIDPTNEDHT 276
Query: 282 LFVRNRIR--MSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLI 326
L VRN +R +S GDL + A IS +R + ++ + + +
Sbjct: 277 LTVRNTVRKLLSSGDLPRALQSPSILAFISKNQRAKERLQDLTDSFL 323
>gi|326692378|ref|ZP_08229383.1| tRNA(Ile)-lysidine synthase [Leuconostoc argentinum KCTC 3773]
Length = 435
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 93/206 (45%), Gaps = 35/206 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I + VSGG DS+ L Q+ + L+ V++ LR ES E+A V+
Sbjct: 18 IIVAVSGGVDSVVLL--------HALRQHLPTAQ----LVVAHVNYHLRAESDEDAAFVA 65
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ E+ C+W D P G ++ AR +RYR F+ + ++Q + +AHHA+DQ
Sbjct: 66 ELAQQYQAQFEL--CEW-DDIPTTG-VEAQARTLRYRFFEALAAKYQTQTIAVAHHANDQ 121
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +L+L+R V LAGMA S + RP L +K +
Sbjct: 122 AETVLLKLARGGQVTQLAGMATS------------------RAKIRRPFLRITKQTLMSY 163
Query: 265 CQGGNRDWVEDPTNRSPLFV-RNRIR 289
Q W D TN P + RNR+R
Sbjct: 164 AQAHGLTWRHDQTNDDPDYTARNRLR 189
>gi|15966489|ref|NP_386842.1| hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
gi|334317493|ref|YP_004550112.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti AK83]
gi|384530619|ref|YP_005714707.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti BL225C]
gi|384537321|ref|YP_005721406.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti SM11]
gi|407721802|ref|YP_006841464.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti Rm41]
gi|433614568|ref|YP_007191366.1| tRNA(Ile)-lysidine synthetase, N-terminal domain protein
[Sinorhizobium meliloti GR4]
gi|61216708|sp|Q92JY3.1|TILS_RHIME RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|15075760|emb|CAC47315.1| Hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
gi|333812795|gb|AEG05464.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti BL225C]
gi|334096487|gb|AEG54498.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti AK83]
gi|336034213|gb|AEH80145.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti SM11]
gi|407320034|emb|CCM68638.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti Rm41]
gi|429552758|gb|AGA07767.1| tRNA(Ile)-lysidine synthetase, N-terminal domain protein
[Sinorhizobium meliloti GR4]
Length = 453
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 84 RIALGVSGGPDSMALCVL----TAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
RI + VSGG DSM L V A + GF+ L A TVDH LR +S E
Sbjct: 21 RILVAVSGGSDSMGLLVALHSAIAADERRGFS-----------LAACTVDHALRPQSACE 69
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ + +GI I C W +P G +Q AAR+ RY L + + I H
Sbjct: 70 AEDVAAFCAALGIAHRI--CRWEGAKPSTG-IQAAARNKRYELLAEAADALGADCIAIGH 126
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
DDQ E +R++R G G A L I ++RP L ++
Sbjct: 127 TRDDQQETVAMRIARGKG----DGAGDGQGEGHGGAGMAASMLYGRRIWVLRPFLGLARA 182
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ Q W++DP+N +P F R R+R +
Sbjct: 183 EIRSFLQARGVSWIDDPSNANPAFERVRVRARI 215
>gi|317496225|ref|ZP_07954585.1| tRNA(Ile)-lysidine synthetase [Gemella morbillorum M424]
gi|316913800|gb|EFV35286.1| tRNA(Ile)-lysidine synthetase [Gemella morbillorum M424]
Length = 446
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 31/223 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+AL +SGG DS+ L L + + L+ ++HGLR+ES EEA V
Sbjct: 20 RLALALSGGVDSIVLFHLLVTKYRHTYKE----------LVVFHINHGLRKESYEEAEFV 69
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA--ARDMRYRLFQKVCIQHQIGVLLIAHHA 201
VS+ IR + ++ + H+ E AR +RY+ F ++ + I +L AHH
Sbjct: 70 EKFVSNYDIRFYKKELE-MNSLARDKHISEEMLARKLRYKAFNEMAAKENITKILTAHHK 128
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQ E ++RL L G + Y + + ++ ++ + RPLL+ K+ +
Sbjct: 129 NDQVENILMRL--------LTGRSM------DYNLAIDNKGRHGNLTIYRPLLNVLKETL 174
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSF 300
+ Q N + D +N + RN IR + L D+S+ SF
Sbjct: 175 EQYAQENNLKYYTDESNFDTDYTRNNIRHNIIPLLNDVSTVSF 217
>gi|377831060|ref|ZP_09814048.1| hypothetical protein LBLM1_03100 [Lactobacillus mucosae LM1]
gi|377555157|gb|EHT16848.1| hypothetical protein LBLM1_03100 [Lactobacillus mucosae LM1]
Length = 466
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 28/205 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DSM L + Q + G L+ V+H LR++S++E +
Sbjct: 33 LVVAVSGGVDSMVLLDV--------MQQLVDPGR----LIVAHVNHELRKQSQQEEAFLK 80
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++ VR + P+ G +++AAR MRYR F + HQ LL AHHA+DQ
Sbjct: 81 SYCQKHQLKL-AVRHWPIKEHPQTG-IEDAARTMRYRFFAQTMHAHQADFLLTAHHANDQ 138
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE ++++ R + LAG+ D+ L+RPLL KD +Y+
Sbjct: 139 AETMLMKMVRGGQLTALAGI--------------EDERPFAGKTLLRPLLTIPKDRLYEY 184
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
W ED TN+ RNR R
Sbjct: 185 ANMHQLTWFEDNTNQDLALTRNRFR 209
>gi|51246784|ref|YP_066668.1| cell cycle protein MesJ [Desulfotalea psychrophila LSv54]
gi|61216493|sp|Q6AJ19.1|TILS_DESPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|50877821|emb|CAG37661.1| related to cell cycle protein MesJ [Desulfotalea psychrophila
LSv54]
Length = 471
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 34/217 (15%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
LK +I +GVSGG DS+AL +LT N + + L+AI +DHGLR +E
Sbjct: 25 LKSGDKIIVGVSGGADSIALLHILTE------LNLDLQ-------LIAIYIDHGLRPDEI 71
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+E + V + +G E + D L + + ++AAR +RY+ F + ++ +
Sbjct: 72 PQEISFVKGQAGAVGAEFESISVDVLALKNCDKLSTEDAARRLRYQAFAEARERYGAKYI 131
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
++AH+ADDQ E F +RL R SG GL+GM + + + S
Sbjct: 132 MVAHNADDQVEEFFIRLLRGSGRRGLSGMPYQNGLLLRPLLSL----------------- 174
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K D+ Q D ED +NR P ++RNRIR+ L
Sbjct: 175 -TKADLLLYLQERGIDHCEDSSNREPCYLRNRIRLDL 210
>gi|416249290|ref|ZP_11636466.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis CO72]
gi|326576214|gb|EGE26129.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis CO72]
Length = 451
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L RP L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
S++ + + +V+D TN P + R RIR +
Sbjct: 172 KISRNQISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|152980618|ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille]
gi|151280695|gb|ABR89105.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille]
Length = 462
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 97/206 (47%), Gaps = 20/206 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IAL SGG DS AL L + G Q E + A V HGL + +
Sbjct: 25 KIALAYSGGLDSAALLHLLHAY---GLAQQIE-------IFAFHVHHGLSPNADDWLAHC 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + +G+ + + R + ++EAAR RY +C H + +LL AHH DD
Sbjct: 75 RAQCAALGVVFDARQVQVT--RQGKNGIEEAARQSRYAALGDMCRAHGVPLLLTAHHLDD 132
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE +L+L R SGV GL+GM A D L + ++L+ RPLL ++D+
Sbjct: 133 QAETVLLQLLRGSGVAGLSGM--------DSANHAADLLGDANLLMGRPLLQVRREDLQA 184
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR 289
+VED +N P + RN +R
Sbjct: 185 YVTAHAIQFVEDESNLDPRYARNALR 210
>gi|416239558|ref|ZP_11632031.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC1]
gi|326567127|gb|EGE17249.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC1]
Length = 451
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L RP L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
S++ + + +V+D TN P + R RIR +
Sbjct: 172 KISRNQISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|339006629|ref|ZP_08639204.1| tRNA(Ile)-lysidine synthase [Brevibacillus laterosporus LMG 15441]
gi|338775838|gb|EGP35366.1| tRNA(Ile)-lysidine synthase [Brevibacillus laterosporus LMG 15441]
Length = 476
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 40/311 (12%)
Query: 68 EAFSRRMAMAGLK-PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
E +RM L PH I +GVSGG DS AL + ++ E ++ L A+
Sbjct: 3 EKVQKRMEQDRLLLPHESIVVGVSGGVDSTALLHI--------LSKMNEQYQYGWKLYAV 54
Query: 127 TVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPK------QGHLQEAARDMR 179
++HG R EES ++A V +G++C + + P+ QG Q A+R++R
Sbjct: 55 HLNHGFRGEESDQDAAYVEDLCHTLGVKC----YSFYESVPEIMKETGQG-PQVASRELR 109
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y+ +++V + + +AHHADDQ E + R+ R + + G GM + +
Sbjct: 110 YQYYRQVAKEVGATKVALAHHADDQVETILFRMMRGTSLHGFTGMPQRRWLHAE------ 163
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG---DLS 296
I LVRPLL ++++ C+ N D +N S + RN +R +
Sbjct: 164 ------QIELVRPLLHVFREELEAYCEANNLQPRHDSSNDSRKYKRNLLRHEVTPHLQQV 217
Query: 297 SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLS 356
+ ++ + + R Y++ + +N + + ++D + L K D+ L
Sbjct: 218 NLRYREHVLQLAEMARVDDDYLQKLSQEALNRIIVKQESDKIILDRKCL---KTFDLALQ 274
Query: 357 -KFLALVLQFI 366
+ + L+L ++
Sbjct: 275 RRMIPLILSYL 285
>gi|15598834|ref|NP_252328.1| hypothetical protein PA3638 [Pseudomonas aeruginosa PAO1]
gi|418586127|ref|ZP_13150173.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa MPAO1/P1]
gi|418589445|ref|ZP_13153367.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa MPAO1/P2]
gi|421518181|ref|ZP_15964855.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PAO579]
gi|451987782|ref|ZP_21935934.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 18A]
gi|61216741|sp|Q9HXZ3.1|TILS_PSEAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|9949797|gb|AAG07026.1|AE004783_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|375043801|gb|EHS36417.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa MPAO1/P1]
gi|375051679|gb|EHS44145.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa MPAO1/P2]
gi|404347663|gb|EJZ74012.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa PAO579]
gi|451754541|emb|CCQ88457.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 18A]
Length = 442
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|85707586|ref|ZP_01038652.1| ATPase [Erythrobacter sp. NAP1]
gi|85689120|gb|EAQ29123.1| ATPase [Erythrobacter sp. NAP1]
Length = 292
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK 185
+++DHG+R E+ E V + + + G+LQ AR+ RY +
Sbjct: 15 MSIDHGIRPEAAREVAFVETICQSLDVPFTSAKVTL-----GAGNLQAKAREARYAALVQ 69
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
Q +IG + AHH DDQAE ++RL+R SG+ GLAG+ + + S
Sbjct: 70 WAAQQKIGHVATAHHIDDQAETLLMRLARGSGLPGLAGVREWTHLPGS------------ 117
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 294
+ L+RPLL F K ++ + V DP+N +P F R R+R L +
Sbjct: 118 DVPLIRPLLGFRKAELEAVVASAGITPVSDPSNENPAFDRVRVRQHLAE 166
>gi|107103152|ref|ZP_01367070.1| hypothetical protein PaerPA_01004221 [Pseudomonas aeruginosa PACS2]
Length = 442
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRSLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|416156561|ref|ZP_11604600.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 101P30B1]
gi|416228003|ref|ZP_11627355.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 46P47B1]
gi|326564469|gb|EGE14695.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 46P47B1]
gi|326574889|gb|EGE24819.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 101P30B1]
Length = 451
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L RP L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
S++ + + +V+D TN P + R RIR +
Sbjct: 172 KISRNQISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|452991340|emb|CCQ97326.1| tRNA(Ile)-lysidine synthase [Clostridium ultunense Esp]
Length = 460
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 34/218 (15%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
++ + I +G+SGGPDSMAL VL K FN ++ V+HG+R EE+
Sbjct: 15 IEENDNIVIGLSGGPDSMALLYVLLDLRKEIDFN-----------IIIAHVNHGVRGEEA 63
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGV 194
+ V + ++ + R + +D K+ + +EA R +RY F+K+ + G
Sbjct: 64 LADEWFVENLAKELNLPYYSTRVN-MDQYAKERRISSEEAGRALRYGFFRKILNKIGGGK 122
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+ +AH+ +DQAE ++R R +G+ GL GM + +N I +RP+L
Sbjct: 123 IAVAHNKNDQAETLLMRFFRGTGIDGLKGMEY----------------RNGDI--IRPIL 164
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++++ K N + D TN P++ RNRIR+ L
Sbjct: 165 GIEREEIEKYLLDNNFETRLDKTNLEPIYNRNRIRLEL 202
>gi|395761812|ref|ZP_10442481.1| MesJ cell cycle protein [Janthinobacterium lividum PAMC 25724]
Length = 472
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 92/205 (44%), Gaps = 20/205 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DS AL L W G L A V HGL +
Sbjct: 28 VGIALSGGLDSAALLHLAHAWAQGRSVT----------LHAFHVHHGLSPNADAWLAHCE 77
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+D+G+ E R L+ K G +EAAR RY ++C H + +LL AHH DDQ
Sbjct: 78 QACADLGVPFEARRVT-LEKNAKTG-TEEAARKRRYAALGELCAVHGVRLLLTAHHQDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +L+L R SG GL+GM A S + L N +++ RPLL ++ ++
Sbjct: 136 AETVLLQLLRGSGTAGLSGM--------DGANSAPELLGNPDLVMARPLLSVARKELEAY 187
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
+ D +N P F RN +R
Sbjct: 188 VGQHGVAHIYDESNDDPRFARNALR 212
>gi|325912386|ref|ZP_08174781.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D]
gi|325475728|gb|EGC78899.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D]
Length = 418
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 101/217 (46%), Gaps = 32/217 (14%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
M++AG K I L +S GPDSMAL + +Q L+ VDH LR
Sbjct: 1 MSLAGKK----IILAISAGPDSMALLDMMRQIVDDPQSQ----------LIICHVDHCLR 46
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+S E+ I++ ++ E W P G L+ AARD RY F K+ ++Q
Sbjct: 47 NDSYLESKIITKYCQQYQLQLE--ETKWDAPHPANG-LEAAARDFRYDFFAKILRKYQAD 103
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRP 252
L AHH DD AE +++L R+ V + + + I +S LLVRP
Sbjct: 104 YLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNS--------------LLVRP 149
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LL FSK+++ + +V D TN+ +RNR+R
Sbjct: 150 LLSFSKEELLVYAKKRKLAYVVDYTNQENETLRNRLR 186
>gi|418964265|ref|ZP_13516082.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383341301|gb|EID19562.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 425
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 103/223 (46%), Gaps = 38/223 (17%)
Query: 68 EAFSRRMAMAGLKPHHR-IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F + + G HHR + L +SGG DSM L ++ E E I+ LA
Sbjct: 4 QQFFQMLQKKGYFRHHRKVLLAISGGLDSMTLLDWLYKYR--------EKLE-IEIYLA- 53
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
V+HG+REES E + +G+ + G ++ ARD RY F+K+
Sbjct: 54 HVNHGVREESDFEEEKLKKIAKKLGVS---IFTSSFSG----PFSEQKARDFRYAFFKKI 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ Q L+ AHHADDQAE +R+ R S ++ ++GM Q F++
Sbjct: 107 MKEEQCTALVTAHHADDQAETIFMRILRGSRLVHISGMK-EKQKFANGE----------- 154
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL F K D I ED TN+ ++RNRIR
Sbjct: 155 --LIRPLLSFQKSDFPPIFH------FEDWTNQENHYLRNRIR 189
>gi|419761104|ref|ZP_14287364.1| tRNA(Ile)-lysidine synthase [Thermosipho africanus H17ap60334]
gi|407513785|gb|EKF48666.1| tRNA(Ile)-lysidine synthase [Thermosipho africanus H17ap60334]
Length = 426
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 29/215 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ + RI + VSGG DS L L A + E +F + TVDHG+R+ESKE
Sbjct: 17 IEENDRIIVAVSGGVDSSVLLNLLA--------RVQEYFKF--SIFCATVDHGIRKESKE 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
E V + + + C I D L + + ++EAAR +RY+ ++ + +
Sbjct: 67 EVKFVYNMAQSLNVECFIKEFDVPLYAKENKLSIEEAARKLRYKFLNEIAKKINANKVAT 126
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AH+ +D AE + RL+R +G G+ GM K + ++RPLL F
Sbjct: 127 AHNLNDLAETVLFRLARGTGPFGIYGM------------------KPRNGNIIRPLLFFE 168
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ ++ + +V D TN + RN IR +
Sbjct: 169 RKEIEQFATENKIPFVVDKTNFDTKYTRNFIRHKI 203
>gi|355640018|ref|ZP_09051508.1| tRNA(Ile)-lysidine synthase [Pseudomonas sp. 2_1_26]
gi|354831538|gb|EHF15550.1| tRNA(Ile)-lysidine synthase [Pseudomonas sp. 2_1_26]
Length = 442
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQASLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|296387857|ref|ZP_06877332.1| putative cell cycle protein [Pseudomonas aeruginosa PAb1]
gi|416873823|ref|ZP_11917726.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 152504]
gi|334844237|gb|EGM22814.1| tRNA(Ile)-lysidine synthetase [Pseudomonas aeruginosa 152504]
Length = 442
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQASLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|328956577|ref|YP_004373963.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4]
gi|328672901|gb|AEB28947.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4]
Length = 467
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 100/240 (41%), Gaps = 36/240 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ L VSGG DSM L L G + V+H LR+ S EE +
Sbjct: 22 RLLLAVSGGVDSMVLVDLIQRLPNAIRPWFG----------VVHVNHQLRQASMEEEKFL 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
S + I R W + ++ AAR+ RY F +V + Q LL HH DD
Sbjct: 72 SQYCASNRIPFFFKR--WPVEEHQVEGVEAAAREFRYAFFHEVLKEQQATHLLTGHHGDD 129
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E ++RL R + +AG+ + L RPLLD+SK+ +Y+
Sbjct: 130 QMETILMRLVRGGQLESIAGIKKHRTFYGKQ--------------LTRPLLDYSKETLYQ 175
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS----------CSFKSELQAVISACRR 313
Q + + ED +N S + RNR R + L F S+LQ VI+ ++
Sbjct: 176 YSQERSLSFYEDESNNSLEYTRNRYRHQIIPLLKKENTQVLTHFADFSSDLQDVITVAKQ 235
>gi|335998468|ref|ZP_08564379.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus ruminis SPM0211]
gi|335348323|gb|EGM49829.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus ruminis SPM0211]
Length = 450
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 30/222 (13%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-V 128
F G+ + + + VS G DSM L L E + + + V
Sbjct: 11 FQAEWKKMGVPANETVLVAVSTGCDSMTLLSLLQ-----------RLPEKMRPTVQVAYV 59
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVC 187
DH LRE+SK+E + ++ G+ + + W + PK+G ++E+AR+ RYR F+K+
Sbjct: 60 DHQLREQSKKETDFITKYCQKNGLV--LFKNVWEKEFHPKKG-IEESAREFRYRFFEKIM 116
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
+ IG LL AHH++DQAE +++ R + L G+ S++ F +
Sbjct: 117 EETGIGYLLTAHHSNDQAETILMKAVRGGDLEQLVGIK-SARTFGTGK------------ 163
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL FSK+ + + + + ED TN +RNR+R
Sbjct: 164 -LLRPLLHFSKETLKEYAERNQIKYFEDETNALDDVLRNRLR 204
>gi|335047583|ref|ZP_08540604.1| tRNA(Ile)-lysidine synthetase [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333761391|gb|EGL38946.1| tRNA(Ile)-lysidine synthetase [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 471
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 30/228 (13%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
Y + +++ G++ RI L VSGG DSM + L + +K E L+
Sbjct: 15 YEKRIFKKLKSYGIESS-RILLAVSGGKDSMTMLDLFSYFK----------DELKLYLVV 63
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQ 184
+H LR+++ + V + G++ + D L + +E AR +RY+ F
Sbjct: 64 CHFNHSLRDDADRDEEFVKSQCKKYGLKFYSKKEDVLLYSNENKLSTEEGARFLRYKFFD 123
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
++ + + AH+ +D AE ++R+ R +G+ GL G+ S DL
Sbjct: 124 EIKRVENLDYIATAHNKNDLAETVMMRILRGTGINGLIGIQ-----------SERGDL-- 170
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+RP+LDFS++++ K + N +V+D TN +++RN+IR++L
Sbjct: 171 -----IRPILDFSREEIEKYIEKNNIPFVDDKTNFEDMYLRNKIRLNL 213
>gi|260654697|ref|ZP_05860187.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1]
gi|424844649|ref|ZP_18269260.1| tRNA(Ile)-lysidine synthetase [Jonquetella anthropi DSM 22815]
gi|260630713|gb|EEX48907.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1]
gi|363986087|gb|EHM12917.1| tRNA(Ile)-lysidine synthetase [Jonquetella anthropi DSM 22815]
Length = 419
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 42/236 (17%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
L+ + K+R A +RR G +P +A+ VSGG DSM L L
Sbjct: 3 LSAVEKFRAA-ARRDGWLG-QP---LAVAVSGGGDSMGLLWLC----------------L 41
Query: 120 IDGL---LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR 176
GL AI +DHGLR S +E V +G+ R D R + ++ A R
Sbjct: 42 ASGLRPCAAIHLDHGLRPSSADERRFVEETCGRLGLPFFWKRIDAASRRLQGESVEVACR 101
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
RY ++ V+ +AH ADDQAE ++ + R G+ GLAG+ ++
Sbjct: 102 RERYAFLREAAQSAGASVVALAHTADDQAETVLMNICRGCGLWGLAGIPRRRGMW----- 156
Query: 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
VRP+LDF +D++ + + WVED +N + RNR+R L
Sbjct: 157 -------------VRPVLDFRRDELRDLLKDAGWTWVEDESNSDRRYTRNRVRADL 199
>gi|288574816|ref|ZP_06393173.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570557|gb|EFC92114.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 455
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 34/224 (15%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAG-WKTGGFNQNGEAGEFIDGLLAI 126
+A R G RIA+ VSGG DSMAL L W + + I
Sbjct: 10 KALHRAGVRQGWWNAKRIAVAVSGGSDSMALLWLMLNCWP--------------NDISVI 55
Query: 127 TVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK 185
V+HG+R + SK +A V + I C I+ D K L++AAR +R+
Sbjct: 56 HVEHGIRGDSSKADACFVKEHCKKLDIPCFILSRDVPVEAMKGESLEQAARRIRHEALAS 115
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
+ + + H++DD E F L L+R SG GLAG+ F
Sbjct: 116 KAEEIGSDFVALGHNSDDTVETFFLNLARGSGAYGLAGIPEVRDRF-------------- 161
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
VRP+L+ S+D++ ++ + WVED +N+ L++RNRIR
Sbjct: 162 ----VRPVLEVSRDELRELLKEVGWGWVEDESNQEDLYLRNRIR 201
>gi|365926659|ref|ZP_09449422.1| tRNA(Ile)-lysidine synthase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420264925|ref|ZP_14767524.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394429561|gb|EJF01989.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 450
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 28/208 (13%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ + VS G DSM L L + + VDH LR E +EE
Sbjct: 19 QKVLVAVSTGVDSMVLLDLLSTL----------PASVRPDIEVAYVDHKLRPEGQEETKF 68
Query: 143 VSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + + I+ +W ++ P G ++ AAR RY F V + I +LL AHHA
Sbjct: 69 IKNFCKEHRIKLHC--SEWKVESHPNTG-IEAAARGFRYNFFADVMKKTGIKILLTAHHA 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE F+++L R + L G+ + + Y LVR LL++SKD++
Sbjct: 126 DDQAETFLMKLIRGGNIEQLRGIRPTRKFAEGY--------------LVRLLLNYSKDEI 171
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + ED TN S ++RNR+R
Sbjct: 172 REYASKRKITYFEDVTNNSNDYLRNRVR 199
>gi|416243889|ref|ZP_11634154.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC7]
gi|326568391|gb|EGE18471.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC7]
Length = 451
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L RP L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+D + + + +V+D TN P + R RIR +
Sbjct: 172 KILRDKISQFAKAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|257868303|ref|ZP_05647956.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257874424|ref|ZP_05654077.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257802417|gb|EEV31289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257808588|gb|EEV37410.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
Length = 466
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 94/211 (44%), Gaps = 26/211 (12%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ R L VS G DSM L + F Q + V+H LR S +EA
Sbjct: 18 NRRFLLAVSTGVDSMVLLQI--------FCQLFPEMQKEPCFGVAHVNHQLRPASAKEAA 69
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + GI RC W + P + ++ +ARD RY F V Q VLL AHH+
Sbjct: 70 FLRQYCQERGIPF-YERC-WEN--PPETGVEASARDFRYTFFADVMSQEGYDVLLTAHHS 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++++ R + GM Q F H+ +L+RPLL SK +
Sbjct: 126 DDQVETMLMKMMREGRLRSAGGMQ-QQQPF-------------HTGVLLRPLLTVSKAAI 171
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Y Q + ED +N PL++RNR+R +
Sbjct: 172 YDYAQAQQIPYFEDESNHEPLYLRNRLRQQV 202
>gi|239816062|ref|YP_002944972.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110]
gi|239802639|gb|ACS19706.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110]
Length = 325
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 105/231 (45%), Gaps = 38/231 (16%)
Query: 68 EAFSRRMAMAGLKPHH-RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
EAF R AMA +P H +A+G SGG DS AL A G +LA
Sbjct: 3 EAFER--AMAAFEPAHLPLAVGFSGGADSTALLAACASAWPGQ-------------VLAF 47
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQK 185
V HGL+ + + + +G+ + R +D R QG E AAR RY F
Sbjct: 48 HVHHGLQAAADDFERHCAAVCERLGVPLAVHR---VDARHAQGDSPEDAARRARYDAFAA 104
Query: 186 VC-IQHQIGVL---LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
+ + +G + ++ HHADDQ E +L LSR +G+ GLA M H
Sbjct: 105 MARMDTALGAIESIVLGHHADDQVETLLLALSRGAGLPGLAAM------------PAH-- 150
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ + + + RPLL D+ + + W+EDPTN + RNRIR L
Sbjct: 151 VRRNGLDIYRPLLAVPGADIRAWLKSVDLPWIEDPTNEDERYTRNRIRAVL 201
>gi|254294754|ref|YP_003060777.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814]
gi|254043285|gb|ACT60080.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814]
Length = 473
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 101/213 (47%), Gaps = 29/213 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI + VSGG DS+ L L+A W K ++ L A+T+DHG+R E+ +EA
Sbjct: 57 RIGIAVSGGSDSLGLLCLSAEWAKLNNWH-----------LQALTIDHGMRPEAAQEAVY 105
Query: 143 VSHRVSDMGIRCEIV--RCDWLDGRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + I + RC P+ Q QE AR R+ LF + + I L++ H
Sbjct: 106 VQSICETLNIPHTTMNWRC------PQDQRATQENARMARHLLFCEWAKRQNIQFLMLGH 159
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
DD+ E ++R S NS GLA M S S + DLK L+RP + ++
Sbjct: 160 TLDDRLETLLIRESSNSSEYGLAAMPSQS---CSPIWPEGRDLK-----LLRPANNLTRQ 211
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D+ I + WV DP+N+ + R RIR L
Sbjct: 212 DLSAILIETDISWVCDPSNQDDKYERVRIRKKL 244
>gi|336394547|ref|ZP_08575946.1| tRNA(Ile)-lysidine synthase [Lactobacillus farciminis KCTC 3681]
Length = 441
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 111/251 (44%), Gaps = 41/251 (16%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ + VSGG DSM L V++ K D + VDH LR ES E N
Sbjct: 22 KVLVAVSGGVDSMVLLHVVSRVLKP-------------DDFAIVDVDHNLRPESASEVNF 68
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V + ++ G R W +PK ++ AAR+ RY F+KV I+ LL AHH +
Sbjct: 69 VKNYCAENGYR--FFTTKWRQ-KPKDIGMEAAARNFRYDFFRKVMIKEDFDTLLTAHHNN 125
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D AE +++L R+ + + + F S +VRPLLDFSK +
Sbjct: 126 DLAENILMKLIRSGNAYEVVSLK-EQRPFGSGQ-------------IVRPLLDFSKRQLA 171
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL--------GDLSSC--SFKSELQAVISACR 312
+ + + V+D TN + +RNR+R ++ G L S F +L A+I +
Sbjct: 172 EYADIHDINHVQDETNFDNITMRNRLRNNIFPELQKENGQLLSHFRFFDQQLTALIDLAK 231
Query: 313 RTRSYVEHVCS 323
+ +E
Sbjct: 232 KQFVTIEQAMD 242
>gi|217076557|ref|YP_002334273.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
africanus TCF52B]
gi|226695550|sp|B7IFR8.1|TILS_THEAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|217036410|gb|ACJ74932.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
africanus TCF52B]
Length = 427
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 29/215 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ + RI + VSGG DS L L A + E +F + TVDHG+R+ESKE
Sbjct: 18 IEENDRILVAVSGGVDSSVLLNLLA--------RVQEYFKF--SIFCATVDHGIRKESKE 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
E V + + + C I D L + + ++EAAR +RY+ ++ + +
Sbjct: 68 EVKFVYNMAQSLNVECFIKEFDVPLYAKENKLSIEEAARKLRYKFLNEIAKKINANKVAT 127
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AH+ +D AE + RL+R +G G+ GM K + ++RPLL F
Sbjct: 128 AHNLNDLAETVLFRLARGTGPFGIYGM------------------KPRNGNIIRPLLFFE 169
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ ++ + +V D TN + RN IR +
Sbjct: 170 RKEIEQFATENKIPFVVDKTNFDTKYTRNFIRHKI 204
>gi|366164046|ref|ZP_09463801.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2]
Length = 465
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 34/228 (14%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
+K R+ +GVSGGPDS +C+L W+ +F ++A+ ++H LR ES
Sbjct: 15 IKKGDRVVVGVSGGPDS--VCLLHVLWRL--------RKDFDLYIVAVHINHMLRGSESC 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ N V S++ I + + D + K L+EA R+ RYR F+ V +
Sbjct: 65 RDENYVKSLCSELEIELQSICVDIKKVSKEKNMSLEEAGREERYRHFEIVADSVGASRIA 124
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AH+ +DQAE ++ + R SG+ GL GM + ++RPLLD
Sbjct: 125 VAHNKNDQAETVLMNIIRGSGLDGLKGMDYIRG------------------RIIRPLLDI 166
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSF 300
++++ C+ + + + D +N ++ RN+IR++ + L C+F
Sbjct: 167 ERNEIEAYCRENSLNPITDSSNLEDIYSRNKIRLNVIPYIDTLFGCNF 214
>gi|420263431|ref|ZP_14766068.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus sp. C1]
gi|394769388|gb|EJF49244.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus sp. C1]
Length = 466
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R L VS G DSM L + F Q + V+H LR S EEA +
Sbjct: 20 RFLLAVSTGVDSMVLLQV--------FCQLFPEMQKEQVFGVAHVNHQLRPASAEEAAFL 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ GI RC W + P + ++ +ARD RY F V + VLL AHH+DD
Sbjct: 72 RQYCQERGIPF-YERC-WEN--PPETGIEASARDFRYTFFADVMSREGYDVLLTAHHSDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E ++++ R G L AG Q F H+ +L+RPLL SK +Y
Sbjct: 128 QVETMLMKMMRE-GRLQSAGGMQQQQPF-------------HAGILLRPLLSVSKTAIYD 173
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q + ED +N PL++RNR+R +
Sbjct: 174 YAQVQQIPYFEDESNHEPLYLRNRLRQQV 202
>gi|367054508|ref|XP_003657632.1| hypothetical protein THITE_75223 [Thielavia terrestris NRRL 8126]
gi|347004898|gb|AEO71296.1| hypothetical protein THITE_75223 [Thielavia terrestris NRRL 8126]
Length = 695
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 80/169 (47%), Gaps = 9/169 (5%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF-IDGLLAITVDHG 131
R A + H IA+ VSGG DSMAL L K +Q + + + + I VDHG
Sbjct: 31 RFPGARGRTHRPIAVAVSGGVDSMALAYLCT--KIRPTDQWFKVADHPVSNPIGIIVDHG 88
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLD------GRPKQGHLQEAARDMRYRLFQK 185
LRE S EA VS + +G++ I R W D +++ AR +RYR
Sbjct: 89 LREGSAAEAANVSQALKKIGVKPNITRLRWADVVEPGVNPSDLPNVETLARYLRYRRLGT 148
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
C Q+ LL AHH DDQ E ++RL G GL GM ++ I Y
Sbjct: 149 FCKVWQVATLLTAHHEDDQYETVLMRLLSGHGYRGLQGMRPATDIPECY 197
>gi|325568176|ref|ZP_08144617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus casseliflavus ATCC 12755]
gi|325158377|gb|EGC70528.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Enterococcus casseliflavus ATCC 12755]
Length = 467
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R L VS G DSM L + F Q + V+H LR S EEA +
Sbjct: 21 RFLLAVSTGVDSMVLLQV--------FCQLFPEMQKEQVFGVAHVNHQLRPASAEEAAFL 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ GI RC W + P + ++ +ARD RY F V + VLL AHH+DD
Sbjct: 73 RQYCQERGIPF-YERC-WEN--PPETGIEASARDFRYTFFADVMSREGYDVLLTAHHSDD 128
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E ++++ R G L AG Q F H+ +L+RPLL SK +Y
Sbjct: 129 QVETMLMKMMRE-GRLQSAGGMQQQQPF-------------HAGILLRPLLSVSKTAIYD 174
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q + ED +N PL++RNR+R +
Sbjct: 175 YAQVQQIPYFEDESNHEPLYLRNRLRQQV 203
>gi|254508666|ref|ZP_05120781.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16]
gi|219548423|gb|EED25433.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16]
Length = 434
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 99/215 (46%), Gaps = 37/215 (17%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P RI L SGG DS L L A ++ E LA+ V HGL + E
Sbjct: 15 LAPRSRIVLAFSGGIDSRVLLSLLARYQQ----------ETHRPTLAVHVHHGLSVNADE 64
Query: 139 EANIVSHRV--SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH--QIGV 194
AN SD+ E V+ LD K ++E ARD RY KV QH + +
Sbjct: 65 WANQCQEWAAQSDVPFILEKVQ---LDASGKS--IEECARDQRY----KVLAQHVNEKDI 115
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
LL H DDQ E F+L L R SG GL+ MA S+ FS+ LVRPLL
Sbjct: 116 LLTGQHGDDQLETFLLALKRGSGPKGLSAMA-ESKPFSNGR-------------LVRPLL 161
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++++ + Q +WVED +N+ F RN IR
Sbjct: 162 KVRREEIEQYAQHHGLNWVEDESNQDTRFDRNYIR 196
>gi|344233123|gb|EGV64996.1| hypothetical protein CANTEDRAFT_104499 [Candida tenuis ATCC 10573]
Length = 480
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 12/212 (5%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + +SGG DS+ + L + ++ FN + L A+T+DH R+ES EEA V
Sbjct: 23 KVLVALSGGVDSVCMTYLLSQYR-DKFNPEMK-------LHAVTIDHNYRKESAEEARKV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
VS + +V + + + + AR RY +F + Q I + +AH+ +D
Sbjct: 75 GELVSKWKVDHYVVPLTYEKPLDQITNFELVARTKRYDVFDNLAKQLNIHNIFVAHNYND 134
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E + R+ S V GL G+ + I D +K I +VRPLL FSK ++
Sbjct: 135 QLETCMQRIRAQSTVFGLTGLKQRALIPIPNKLPF-DYVK--PIEVVRPLLSFSKKEIID 191
Query: 264 ICQGGNRDWVEDPTNRSPLFV-RNRIRMSLGD 294
C N W ED TN+ RN R++L +
Sbjct: 192 TCVQNNIQWFEDKTNQDIFLTDRNLYRVALNE 223
>gi|317484627|ref|ZP_07943530.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6]
gi|316924101|gb|EFV45284.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6]
Length = 355
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 96/213 (45%), Gaps = 32/213 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
G+ PHH + + SGG DS AL V+ + G + L+ +DH LR ES
Sbjct: 45 GVSPHH-VIVAFSGGADSTALAVIL---RCLGVS-----------LVLAHLDHRLRPESG 89
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EEA +G+ C + R D R + L++A R RY F + + ++
Sbjct: 90 EEAESARRFAERLGVPCMVRRVDVEALARSEGIGLEDAGRRARYAFFDSALLSERAEWVV 149
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
HH DD +E ++RL R SG GL GM + + L+RPLL
Sbjct: 150 TGHHLDDLSEDVLMRLVRGSGWPGLGGM----------------KAVDPARRLLRPLLGT 193
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ++ + DW+ED +NRS F RNR+R
Sbjct: 194 PRAELEAFLRSLGVDWIEDASNRSDAFRRNRMR 226
>gi|116051635|ref|YP_789526.1| hypothetical protein PA14_17280 [Pseudomonas aeruginosa UCBPP-PA14]
gi|421173124|ref|ZP_15630878.1| hypothetical protein PACI27_1364 [Pseudomonas aeruginosa CI27]
gi|115586856|gb|ABJ12871.1| putative cell cycle protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|404536425|gb|EKA46065.1| hypothetical protein PACI27_1364 [Pseudomonas aeruginosa CI27]
Length = 442
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|421166130|ref|ZP_15624398.1| hypothetical protein PABE177_1219 [Pseudomonas aeruginosa ATCC
700888]
gi|404539107|gb|EKA48612.1| hypothetical protein PABE177_1219 [Pseudomonas aeruginosa ATCC
700888]
Length = 442
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL-NPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|398819039|ref|ZP_10577611.1| tRNA(Ile)-lysidine synthetase [Brevibacillus sp. BC25]
gi|398026544|gb|EJL20143.1| tRNA(Ile)-lysidine synthetase [Brevibacillus sp. BC25]
Length = 475
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 140/298 (46%), Gaps = 33/298 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P I +G+SGG DS AL + A N+ + + L A+ ++HG R EE++
Sbjct: 15 LLPGETIVVGISGGNDSTALLHILAS-----LNKQYQ---YHWKLHAVHLNHGFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
++A ++G+ + D K G QEA+RD+RYRL+++V + L
Sbjct: 67 QDALFAEELCRELGVAFHLFEYDVPAYMEKTGLGGQEASRDIRYRLYREVGLAQGGTKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E + R R S + GL GM L + I LVRPLL
Sbjct: 127 LAHHADDQVETILFRFVRGSRLHGLTGMPKRRM------------LADCPIELVRPLLHK 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRR 313
++ ++ C+ ED +N+S + RN +R M L + + ++ + A A R+
Sbjct: 175 TRQELEGYCREHQLVPREDSSNQSRKYTRNLLRLDVMPLLEKVNDKYREHILATAEAIRQ 234
Query: 314 TRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIE--DIFLS-KFLALVLQFICQ 368
+ + + + E VT+ + A +++ K + D+ L + + L+L ++ +
Sbjct: 235 DEALLMRLAREQLKE-VTIEKKPEAF----LMDNDKFQTCDVALQRRMITLILSYLSK 287
>gi|365903686|ref|ZP_09441509.1| tRNA(Ile)-lysidine synthase [Lactobacillus malefermentans KCTC
3548]
Length = 458
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 24/166 (14%)
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH----LQEAARDMRYRLF 183
V+H LR+ES+ EA + + GI + W PK+ H ++ AAR RY F
Sbjct: 56 VNHQLRDESEREAAFLEQYCHERGISFHL--AVW----PKKDHPQTGIEAAARTFRYHFF 109
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
++ + L+ AHHADDQAE +++L R + L G+ SQ F
Sbjct: 110 SQIISEENADALMTAHHADDQAETVLMKLIRGGSLNQLIGIK-PSQPFE----------- 157
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++L+RPLL FSK+++ W ED TN+S +RNRIR
Sbjct: 158 --KVVLIRPLLSFSKNEIKDYAVDHQLTWFEDSTNQSNDVLRNRIR 201
>gi|172056094|ref|YP_001812554.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15]
gi|259533717|sp|B1YGQ4.1|TILS_EXIS2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|171988615|gb|ACB59537.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15]
Length = 414
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 42/283 (14%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140
P + + VSGG DSM L L + N + L+ + V HGLR+ES EEA
Sbjct: 8 PKEPLLVAVSGGCDSMVLAHLL-------YEANHD-------LMIVHVHHGLRKESDEEA 53
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
V + + R +W P Q A R RY FQ+V + L++AHH
Sbjct: 54 EAVRAWAEARRVGIRMTRLEWEGQAPSQA----ACRTRRYAFFQEVMAETGRRHLVLAHH 109
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DDQ E +++L R G AG+ +I S H RPLL +SK
Sbjct: 110 RDDQLETLLIQLIR-----GEAGVDGIPRIRSFATGQIH-----------RPLLPYSKQQ 153
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRTRS 316
+Y + W ED TN ++RN++R L +L ++ +QA + + +
Sbjct: 154 LYDYAKARQVVWHEDETNAGTKYLRNQMRHRLLPLLAELRPGYEEATVQAAMVRYEQKQE 213
Query: 317 YVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL 359
++++V S + E +T D+G + ++ L P+ + L L
Sbjct: 214 HLKYVTS-YVKEQMT--DRGLPLEAIQKL-PTDFRRLVLRALL 252
>gi|418400226|ref|ZP_12973769.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti CCNWSX0020]
gi|359505902|gb|EHK78421.1| tRNA(Ile)-lysidine synthase [Sinorhizobium meliloti CCNWSX0020]
Length = 453
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 91/213 (42%), Gaps = 22/213 (10%)
Query: 84 RIALGVSGGPDSMALCVL----TAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
RI + VSGG DSM L V A + GF+ L A TVDH LR +S E
Sbjct: 21 RILVAVSGGSDSMGLLVALHSAIAADERRGFS-----------LAACTVDHALRPQSARE 69
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ + +GI I C W +P G +Q AAR+ RY L + + H
Sbjct: 70 AEDVAAFCAALGIAHRI--CRWEGAKPSTG-IQAAARNKRYELLAEAADALGADCIATGH 126
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
DDQ E +R++R G G A L I ++RP L ++
Sbjct: 127 TRDDQQETVAMRIARGKG----DGAGDGQGEGHGGAGMAASMLYGRRIWVLRPFLGLARA 182
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ Q W +DP+N +P F R R+R +
Sbjct: 183 EIRSFLQARGVSWFDDPSNANPAFERVRVRAQI 215
>gi|254242336|ref|ZP_04935658.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126195714|gb|EAZ59777.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 442
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|420138163|ref|ZP_14646104.1| hypothetical protein PACIG1_1602 [Pseudomonas aeruginosa CIG1]
gi|421158569|ref|ZP_15617817.1| hypothetical protein PABE173_1428 [Pseudomonas aeruginosa ATCC
25324]
gi|403249146|gb|EJY62661.1| hypothetical protein PACIG1_1602 [Pseudomonas aeruginosa CIG1]
gi|404549510|gb|EKA58368.1| hypothetical protein PABE173_1428 [Pseudomonas aeruginosa ATCC
25324]
Length = 442
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQVVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|416216097|ref|ZP_11623498.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 7169]
gi|326562167|gb|EGE12495.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 7169]
Length = 451
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L RP L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+D + + +V+D TN P + R RIR +
Sbjct: 172 KILRDKISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|359399555|ref|ZP_09192557.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
pentaromativorans US6-1]
gi|357599145|gb|EHJ60861.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
pentaromativorans US6-1]
Length = 337
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 30/243 (12%)
Query: 52 SHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFN 111
S A + + ++RE + A R+A+ VSGGPDS AL +L A G
Sbjct: 9 SAARLIPQAERVARFREGLAALWPEAIDAQPARLAIAVSGGPDSTALLLLAAAALPGRVG 68
Query: 112 QNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL 171
A TVDHGLR ES +EA V+ + +G+ E +R + G++
Sbjct: 69 -------------AATVDHGLRPESAQEAADVAALCARLGVPHETLRVE-----VAPGNV 110
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
Q AR RY + Q+ L AHHADDQAE ++RL+R SGV GLAG Q+
Sbjct: 111 QAEARSARYAALARWIEARQLAALATAHHADDQAETLLMRLNRASGVAGLAGTRGRGQV- 169
Query: 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS 291
+ I L+RP+L + + ++ ++ +DP+N + R R+R +
Sbjct: 170 -----------PDCDIPLLRPVLGWRRSELAEVVAEAGILAAQDPSNADDKYDRVRVRKA 218
Query: 292 LGD 294
L D
Sbjct: 219 LAD 221
>gi|330942652|ref|XP_003306154.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1]
gi|311316480|gb|EFQ85748.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1]
Length = 644
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 98/223 (43%), Gaps = 27/223 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ +SGG DSMAL L + + + + A VDH +R ES EEA V+
Sbjct: 11 LGFAISGGVDSMALAAL--------YKEAQSLDDCLSKPHAFIVDHKVRPESTEEAEWVA 62
Query: 145 HRV-SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ S +G+ I+ W D + + AR +RY+ + C +I L++ HHADD
Sbjct: 63 QELRSKLGMESTILPLTWRDEFDSK-RFETEARTLRYQALGRACRDMKITSLMVGHHADD 121
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQI----------FSSYAYSCHDDL------KNHSI 247
QAE ++RLS + GL M I S + DL + I
Sbjct: 122 QAETVMMRLSNHRLRSGLQAMQRVEWIPECEGIYGVYHSGRVQKPNPDLDMPFPVEQGGI 181
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR-SPLFVRNRIR 289
++RPLL F K + C+ W ED TN+ L RN IR
Sbjct: 182 QVLRPLLGFEKARLIATCEEKKVGWAEDQTNQIQSLTSRNAIR 224
>gi|47093161|ref|ZP_00230936.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes str. 4b H7858]
gi|226222848|ref|YP_002756955.1| hypothetical protein Lm4b_00217 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254933059|ref|ZP_05266418.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|405748561|ref|YP_006672027.1| bifunctional protein TilS/HprT [Listeria monocytogenes ATCC 19117]
gi|406702991|ref|YP_006753345.1| bifunctional protein TilS/HprT [Listeria monocytogenes L312]
gi|424821948|ref|ZP_18246961.1| Bifunctional protein tilS/hprT [Listeria monocytogenes str. Scott
A]
gi|21667249|gb|AAM74001.1|AF467001_2 YacA/HprT-like protein [Listeria monocytogenes]
gi|47018468|gb|EAL09226.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes serotype 4b str. H7858]
gi|225875310|emb|CAS04007.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293584617|gb|EFF96649.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|332310628|gb|EGJ23723.1| Bifunctional protein tilS/hprT [Listeria monocytogenes str. Scott
A]
gi|404217761|emb|CBY69125.1| bifunctional protein TilS/HprT [Listeria monocytogenes ATCC 19117]
gi|406360021|emb|CBY66294.1| bifunctional protein TilS/HprT [Listeria monocytogenes L312]
Length = 648
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 27/216 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHINHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 EQNVVEAFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ A +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K ++ Q + D +N S + RNR R L
Sbjct: 173 TKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|383935857|ref|ZP_09989290.1| tRNA(Ile)-lysidine synthase [Rheinheimera nanhaiensis E407-8]
gi|383703176|dbj|GAB59381.1| tRNA(Ile)-lysidine synthase [Rheinheimera nanhaiensis E407-8]
Length = 448
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 128/285 (44%), Gaps = 43/285 (15%)
Query: 83 HRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+++ L +SGG DSM L +L K F L A+ V+HG+ + +
Sbjct: 27 NQLVLALSGGLDSMVLLHLLVQAQKQQAF-----------ALSAVYVNHGISQHAGHWGQ 75
Query: 142 IVSHRVSDMGIRC--EIVRCDWLDGRPKQGHLQEAARDMRYR-LFQKVCIQHQIGVLLIA 198
+ + +G+ + V+ D +L+ AR RY+ L Q VC + LL A
Sbjct: 76 FCAAQCQALGVSFYQQQVKLSGTD------NLEHKARQARYQALAQYVCTGKHL--LLTA 127
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQ E +L L R +G GLAG+A + + F+ L+RPLL FS+
Sbjct: 128 HHGDDQLETLLLALKRGAGPAGLAGIA-ARRPFAKGT-------------LLRPLLAFSR 173
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS---CSFKSELQAVISACRRTR 315
+ + Q WVED +N F RN IR + L F +Q + + +
Sbjct: 174 QQLEQYAQAHQLSWVEDDSNSDTRFERNFIRQQIAPLLQKRWPHFNQTVQRSMQHIAQQQ 233
Query: 316 SYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLA 360
+ ++H + ++ V V QG + L P++ +D+ + ++LA
Sbjct: 234 ALLDHYTAQALS--VCVNAQGLDLTQLAAYLPAQ-QDLVIRQWLA 275
>gi|358449649|ref|ZP_09160131.1| tRNA(Ile)-lysidine synthetase [Marinobacter manganoxydans MnI7-9]
gi|357226171|gb|EHJ04654.1| tRNA(Ile)-lysidine synthetase [Marinobacter manganoxydans MnI7-9]
Length = 449
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 27/214 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H R+ + +SGG DS L L A + +G +G + AI ++H L+ + +
Sbjct: 24 LPDHARLWVALSGGLDSTLLLHLAA-------HCHGCSG----AVRAIHINHQLQPNASD 72
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ +G+ + R GR ++EAAR RY + + + + +L+A
Sbjct: 73 TESFCRGECERLGVPLVVERVTVDGGRSSGAGIEEAARKARYAALEALVGKGDL--VLMA 130
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQAE + R+ R SGV GLAGM S ++ ++ LVRPLL F +
Sbjct: 131 HHGDDQAETVLFRMLRGSGVAGLAGMPASRELGTAT--------------LVRPLLGFER 176
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ + + WV+DP+N F RN +R ++
Sbjct: 177 AELERWARVAGLSWVDDPSNTDQRFDRNFLRHTV 210
>gi|253576850|ref|ZP_04854175.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843717|gb|EES71740.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
str. D14]
Length = 485
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 81 PHHRIALGVSGGPDSMALCVL---TAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
P I + VSGG DS L + AG K G L+ + HGLR +E+
Sbjct: 25 PGDVIVVAVSGGVDSTVLLHIMKEIAGDKALGLQ-----------LICAHLHHGLRGDEA 73
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVL 195
+A V +GI E+ D + G L+ AAR+ RY +V ++ +
Sbjct: 74 DRDAEFVRELAERLGIPFELGYADVRAYMKETGQSLELAAREKRYEYLHQVAERYGASSI 133
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+AHHADDQAE ++RL R SG GLAGM + ++ L+RPLL
Sbjct: 134 ALAHHADDQAETVLMRLLRGSGPSGLAGM--------------RPKRREKNVELIRPLLR 179
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
K D+ + C+ +VED +N RN IR+ +
Sbjct: 180 IYKTDLLQACRESGLAYVEDSSNLDKEMTRNSIRLDV 216
>gi|312874948|ref|ZP_07734967.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b]
gi|325913138|ref|ZP_08175508.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B]
gi|311089693|gb|EFQ48118.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b]
gi|325477559|gb|EGC80701.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B]
Length = 430
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 33/229 (14%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P+ G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPENG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNS------- 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLVRPLL FSK+++ + ++ D TN+ +RNR+R
Sbjct: 157 -------LLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|409385739|ref|ZP_11238284.1| tRNA(Ile)-lysidine synthetase [Lactococcus raffinolactis 4877]
gi|399206868|emb|CCK19199.1| tRNA(Ile)-lysidine synthetase [Lactococcus raffinolactis 4877]
Length = 412
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 39/225 (17%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEA 140
H + + +SGG DSM L FN EA + ++ L++ ++H R S EA
Sbjct: 20 HQEVLVALSGGLDSMTL-----------FNWLYEARDLLNISLSVAHINHQQRAVSDYEA 68
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ +++++GI I +++ +E ARD RY F+K+ +H + L+ AHH
Sbjct: 69 KALQEKMTELGIPFYI--ANYVGSFS-----EEKARDFRYDFFEKIMKKHHLTALVTAHH 121
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DD E F++R R S + L GM + Q F + + L+RPLLDF K +
Sbjct: 122 KDDLTENFLIRQIRGSRLRHLTGME-AVQTFGE---------ERQGLSLIRPLLDFEKSE 171
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQ 305
D+ ED +N ++RNR+R +L +F+ E Q
Sbjct: 172 F------DATDYFEDASNAENDYLRNRVR----NLYLPAFEKENQ 206
>gi|416256228|ref|ZP_11639595.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis O35E]
gi|326574306|gb|EGE24253.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis O35E]
Length = 451
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHRWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L RP L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+D + + +V+D TN P + R RIR +
Sbjct: 172 KILRDKISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|385331012|ref|YP_005884963.1| cell cycle protein MesJ [Marinobacter adhaerens HP15]
gi|311694162|gb|ADP97035.1| cell cycle protein MesJ [Marinobacter adhaerens HP15]
Length = 449
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 27/214 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H R+ + +SGG DS L L A + +G +G + AI ++H L+ + +
Sbjct: 24 LPDHTRLWVALSGGLDSTLLLHLAA-------HCHGCSG----AVRAIHINHQLQPNASD 72
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ +G+ + R GR ++EAAR RY + + + + +L+A
Sbjct: 73 TESFCRGECERLGVPLVVERVTVDGGRSSGAGIEEAARKARYAALEALVGKGDL--VLMA 130
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQAE + R+ R SGV GLAGM S ++ ++ LVRPLL F +
Sbjct: 131 HHGDDQAETVLFRMLRGSGVAGLAGMPASRELGTAT--------------LVRPLLGFER 176
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ + + WV+DP+N F RN +R ++
Sbjct: 177 AELERWARVAGLSWVDDPSNTDQRFDRNFLRHTV 210
>gi|383807774|ref|ZP_09963333.1| hypothetical protein IMCC13023_12950 [Candidatus Aquiluna sp.
IMCC13023]
gi|383298517|gb|EIC91133.1| hypothetical protein IMCC13023_12950 [Candidatus Aquiluna sp.
IMCC13023]
Length = 332
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 38/235 (16%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALC--VLTAGWKTGGFNQNGEAGEFI 120
+ R A + L+P R+ + SGGPDSMAL ++ G K G
Sbjct: 11 VADVRRAVRDSLEALNLEPDSRVLVACSGGPDSMALAAALIFEGPKLGLR---------- 60
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMG---IRCEIVRCDWLDGRPKQGHLQEAARD 177
+ A+ VDHGL++ S E A + ++ ++G + E + P + AAR
Sbjct: 61 --VTAVVVDHGLQKASSEVAQSTAAKLEELGADPVVIETITVAETGNGP-----EAAART 113
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY ++ V+ + H+ +DQAE +L L+R SG+ +AGM
Sbjct: 114 ARYEALERARKLVSAEVIFLGHNLEDQAETVLLGLTRGSGLRSIAGM------------- 160
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D KN L RPLL +D + + C + + +DP N+ P F R RIR L
Sbjct: 161 -QDFDKNKK--LARPLLGIKRDVLLQACLDQDIEAWQDPHNKDPKFTRVRIRQLL 212
>gi|405754301|ref|YP_006677765.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2540]
gi|404223501|emb|CBY74863.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2540]
Length = 648
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 27/216 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N + E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVSKEAIS---VAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 EQNVVEAFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ A +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K ++ Q + D +N S + RNR R L
Sbjct: 173 TKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|160947239|ref|ZP_02094406.1| hypothetical protein PEPMIC_01172 [Parvimonas micra ATCC 33270]
gi|158446373|gb|EDP23368.1| tRNA(Ile)-lysidine synthetase [Parvimonas micra ATCC 33270]
Length = 457
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 29/209 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DSM + L +K E L+ +H LR+++ + V
Sbjct: 19 VLLAVSGGKDSMIMLDLFNYFKY----------ELKLNLVVCHFNHSLRDDADRDEKFVK 68
Query: 145 HRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ G++ + D L + +E AR +RY+ F +V + + AH+ +D
Sbjct: 69 TQCEKYGLKFYSKKEDVLLYSNENKLSTEEGARFLRYKFFDEVKRIENLEYIATAHNKND 128
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
AE I+R+ R +G+ GL G+ S DL +RP+L+FS+D++ K
Sbjct: 129 LAETVIMRILRGTGINGLIGIQ-----------SERGDL-------IRPILNFSRDEIEK 170
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ N +VED TN L++RN+IR++L
Sbjct: 171 YIEENNIPFVEDKTNFEELYLRNKIRLNL 199
>gi|456063201|ref|YP_007502171.1| tRNA(Ile)-lysidine synthetase [beta proteobacterium CB]
gi|455440498|gb|AGG33436.1| tRNA(Ile)-lysidine synthetase [beta proteobacterium CB]
Length = 441
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
A K RI L +SGG DS+ L K N E E + A + HGL++ +
Sbjct: 13 AKTKAVKRIGLALSGGLDSVVLLDTVC--KAVQANAIQEPTE----VWAFHIHHGLQKPA 66
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ + + + D QG+++ AR RY +CI+H I LL
Sbjct: 67 DQWLEFCEKLAKKYQVHFDFRLLHFSDK--TQGNIEARARAERYDALTDLCIEHGIEDLL 124
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS--ILLVRPLL 254
+AHH +DQAE +L+L R +GV GL+GM H N I L RPLL
Sbjct: 125 LAHHQNDQAETVLLQLLRGAGVAGLSGMPL------------HRTNANQGDPITLWRPLL 172
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ S+ ++ + WVEDP+N++ + RN IR +
Sbjct: 173 NQSRAELEAYAKARKLKWVEDPSNQNTRYRRNAIRKEI 210
>gi|407926226|gb|EKG19195.1| tRNA(Ile)-lysidine/2-thiocytidine synthase [Macrophomina phaseolina
MS6]
Length = 524
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 30/243 (12%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRL 182
A VDH LR+ S EEA V + +GI E+++ W + +L+ AR +R+RL
Sbjct: 26 AFIVDHQLRQGSSEEALEVQEHLYKLGIPSEVLQIQWPGDTDAKSLTNLETLARRLRFRL 85
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA-YSCHD- 240
+ C H I LL+AHH+DDQAE ++RL +GL GM + I + + H
Sbjct: 86 LGQACRDHGIESLLLAHHSDDQAETVLMRLIEGHRGMGLRGMRPAGDIPECFGMHGVHQS 145
Query: 241 --------------------DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRS 280
D++ I ++RPLL FSK + C+ WVED TN+
Sbjct: 146 HAEWIDSGVSSSPIKRQRAVDVEYWGIQVLRPLLPFSKARLTATCEASGTQWVEDETNKD 205
Query: 281 P-LFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAV 339
P L +RN IR + S+ A++ +RT + E +++DQ AV
Sbjct: 206 PTLTMRNTIRYLYNTYRLPAALSK-PALLQMTQRTADKIRQRE----KEVNSLLDQLDAV 260
Query: 340 IDL 342
+DL
Sbjct: 261 LDL 263
>gi|297538819|ref|YP_003674588.1| tRNA(Ile)-lysidine synthetase [Methylotenera versatilis 301]
gi|297258166|gb|ADI30011.1| tRNA(Ile)-lysidine synthetase [Methylotenera versatilis 301]
Length = 456
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 112/242 (46%), Gaps = 35/242 (14%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
LKP+ + L +SGG DS L +L A +T F L A+ V HGL +
Sbjct: 34 LKPNQHVLLALSGGLDSTVLLHLLAAAKQTIRFE-----------LHAMHVHHGLSPNAD 82
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR-LFQKVCIQHQIGVLL 196
A+ + + + ++VR LD KQG ++ AAR +RY LF ++
Sbjct: 83 AWADFCMQQCQLLNVPIKVVRVQ-LDLNAKQG-IEAAARQLRYEALFDFKVSGIAPDFVV 140
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AHH DDQAE +L+L R +GV GLA M C D+ S L+RPLLD
Sbjct: 141 TAHHQDDQAETLLLQLFRGAGVKGLASMG------------CIDE----SRRLMRPLLDI 184
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 316
S+ + + + N W D +N + + RN +R + + + + S V S RT S
Sbjct: 185 SRQTLQEYAEQNNIQWCNDESNDNTQYERNFVRHDVMPVLATRYPS----VKSVLARTAS 240
Query: 317 YV 318
++
Sbjct: 241 HL 242
>gi|416220553|ref|ZP_11625477.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 103P14B1]
gi|326566220|gb|EGE16372.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 103P14B1]
Length = 451
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 78 GLKPHHRIALGVSGGPDSMAL---CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
L H ++ L SGG DS+AL C L + Q G+ I + V HG +
Sbjct: 17 ALPAHAKLYLACSGGRDSLALAYACFLL-------YRQ----GKIIRLPTILHVHHGWQA 65
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ +V + G C+I+R + + H ARD RY+ F + +Q V
Sbjct: 66 ANDAWMQLVHCWAIEHGFDCQILRITL--AKNSETH----ARDARYQAFG--LVMNQGDV 117
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L++AHHA+DQAE ++RL +G+ GL+GM A + H D +I L RP L
Sbjct: 118 LMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQ------AKTVHTDEAAKTITLWRPWL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
S++ + + +V+D TN P + R RIR +
Sbjct: 172 KISRNQISQFANAHALPYVDDITNTDPAYARGRIRQDI 209
>gi|86142944|ref|ZP_01061366.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217]
gi|85830389|gb|EAQ48848.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217]
Length = 436
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 119/259 (45%), Gaps = 37/259 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
R L VSGG DS+ L L + K ID +A + LR +ES +A
Sbjct: 20 RFLLAVSGGLDSVVLAHLFSECK-------------IDFEIA-HCNFNLRGKESDADAVF 65
Query: 143 VSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + ++ + D + ++ +Q AAR++RY F+++C H + L AHHA
Sbjct: 66 VEKLAEKLHVKFHLQNFDTEAYAQDQKVSIQMAARELRYHWFEELCQLHHLPFLATAHHA 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
D E F++ LSR SG+ GL G+ + +D LVRPLL FS++++
Sbjct: 126 KDDLETFLINLSRGSGLNGLTGI------------TAEND------RLVRPLLPFSREEI 167
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRRTRSYV 318
+ W ED +N S ++RN +R + + ++ F ++ Q + T +
Sbjct: 168 LTYAEANTLAWREDSSNASDKYLRNHLRHHAIPALEEAAPQFLTQFQKSQQHLKETALLL 227
Query: 319 EHVCSNLINEAVTVMDQGY 337
E + L ++ VT +GY
Sbjct: 228 EDYTALLFSQIVTQSFKGY 246
>gi|309808776|ref|ZP_07702662.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a]
gi|308168012|gb|EFO70144.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a]
Length = 418
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 28/207 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I L +S GPDSMAL + +Q L+ VDH LR +S E+ I+
Sbjct: 7 KIILAISAGPDSMALLDMMRQIVDDPQSQ----------LIICHVDHCLRNDSYLESEII 56
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ E + W P+ G L+ AARD RY F K+ ++Q L AHH DD
Sbjct: 57 TKYCQQYKLQLEETK--WDTPHPENG-LEAAARDFRYDFFAKILRKYQADYLFTAHHGDD 113
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
AE +++L R+ V + + + I +S LLVRPLL FSK+++
Sbjct: 114 LAENILIKLLRSGNVQEMNSLRPIRNWIDNS--------------LLVRPLLSFSKEELL 159
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ++ D TN+ +RNR+R
Sbjct: 160 VYAKKRKLAYIVDYTNQENETLRNRLR 186
>gi|332716440|ref|YP_004443906.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3]
gi|325063125|gb|ADY66815.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3]
Length = 445
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP H I + +SGG DS L + T EAG L A+TVDH LR ES +E
Sbjct: 28 KPVH-ILIAISGGSDSTGLLLAT-------HEARAEAGSDRVQLSAVTVDHALRAESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A+ VS +++GI + R W D +P G + EA+R RY L V +++ H
Sbjct: 80 AHKVSLLCAELGIPHTVRR--WDDPKPASG-ISEASRLARYSLIAGVASDIGADLVMTGH 136
Query: 200 HADDQAELFILRLSR--NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
DQ E +R +R +S LGLAGMA + Y H I+ RP L
Sbjct: 137 TLGDQRETVAMRAARSGSSENLGLAGMA------DAVLYGGR-----HWIM--RPFLTCE 183
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ ++ +R W +DP+N + + R R+R SL
Sbjct: 184 RQEIRDFVLSRSRGWFDDPSNDNARYERVRVRQSL 218
>gi|163791058|ref|ZP_02185479.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7]
gi|159873703|gb|EDP67786.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7]
Length = 471
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 100/244 (40%), Gaps = 36/244 (14%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP R+ L VSGG DSM L L G + V+H LRE S EE
Sbjct: 18 KPTDRLLLAVSGGVDSMVLLDLIQRLPKVVRPWFG----------MVHVNHQLREASIEE 67
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+ I R + +P G ++ AAR+ RY F+ V Q LL H
Sbjct: 68 EKFLVDYCKSANISFFFKRWP-VKEQPTDG-VEAAAREFRYAFFRNVLRDQQATHLLTGH 125
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
H DDQ E ++RL R + +AG+ + S L RPLL +SK
Sbjct: 126 HGDDQIETILMRLVRGGQLESIAGIKEQRSFYGSQ--------------LTRPLLPYSKK 171
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS----------CSFKSELQAVIS 309
+Y Q + + ED TN+S + RNR R + L F S+LQ VI+
Sbjct: 172 MLYHYSQERSLVFFEDETNKSLDYTRNRYRHQIVPLLKKENTQVLTHFSEFSSDLQDVIT 231
Query: 310 ACRR 313
++
Sbjct: 232 VAKK 235
>gi|402814509|ref|ZP_10864103.1| tRNA(Ile)-lysidine synthase TilS [Paenibacillus alvei DSM 29]
gi|402508356|gb|EJW18877.1| tRNA(Ile)-lysidine synthase TilS [Paenibacillus alvei DSM 29]
Length = 531
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 25/211 (11%)
Query: 85 IALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
I + VSGGPDSM L LTA ++ + L+ V HG R + EE
Sbjct: 39 IVVAVSGGPDSMLLLHALTA------LDERSDCKP--GKLIVAHVHHGFRGQESEEEAEF 90
Query: 144 SHRVS-DMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ + +G+ E++R D ++G + Q AAR +RY ++ ++ + +AHHA
Sbjct: 91 VEQETVKLGLPFEMIRVDAPGLSKREGLNPQAAARQLRYEFLIQIAHRYAATHIALAHHA 150
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE ++R+ R +G+ GLAGMA+S + + +RPLLD K ++
Sbjct: 151 DDQAETVLMRMIRGTGITGLAGMAWSRE--------------EDGLHYIRPLLDLRKAEV 196
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ C +V D +N + RNR+R+ +
Sbjct: 197 LQRCDERGISYVTDSSNAKRSYFRNRMRLDI 227
>gi|218890137|ref|YP_002439001.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58]
gi|254236552|ref|ZP_04929875.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|386057375|ref|YP_005973897.1| putative cell cycle protein [Pseudomonas aeruginosa M18]
gi|421152553|ref|ZP_15612133.1| hypothetical protein PABE171_1479 [Pseudomonas aeruginosa ATCC
14886]
gi|421179198|ref|ZP_15636794.1| hypothetical protein PAE2_1243 [Pseudomonas aeruginosa E2]
gi|424939548|ref|ZP_18355311.1| putative cell cycle protein [Pseudomonas aeruginosa NCMG1179]
gi|126168483|gb|EAZ53994.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218770360|emb|CAW26125.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58]
gi|346055994|dbj|GAA15877.1| putative cell cycle protein [Pseudomonas aeruginosa NCMG1179]
gi|347303681|gb|AEO73795.1| putative cell cycle protein [Pseudomonas aeruginosa M18]
gi|404525313|gb|EKA35589.1| hypothetical protein PABE171_1479 [Pseudomonas aeruginosa ATCC
14886]
gi|404547441|gb|EKA56439.1| hypothetical protein PAE2_1243 [Pseudomonas aeruginosa E2]
Length = 442
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 104/235 (44%), Gaps = 34/235 (14%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +GI + R G G +++AARD
Sbjct: 47 EALPALSALHVHHGLQAAADGWPAHCQVVCRSLGIPLRVERVQVAVG----GSIEQAARD 102
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR FQ + Q VLL A H DDQAE + RL R +G+ GLA M S +
Sbjct: 103 ARYRAFQANLGEGQ--VLLTAQHLDDQAETLLFRLLRGAGLRGLAAMPASRPLGGGR--- 157
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L RPLL S+ ++ Q DWVEDP+N+ P F RN +R + +
Sbjct: 158 -----------LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLA 206
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI-LNPSKIE 351
+ QAV R C+ + EA ++ + A IDL PS+++
Sbjct: 207 SHWP---QAVAGMAR---------CAAHLREAEDLLAE-LAAIDLRACRQPSELD 248
>gi|255030074|ref|ZP_05302025.1| hypothetical protein LmonL_15194 [Listeria monocytogenes LO28]
Length = 275
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 97/211 (45%), Gaps = 27/211 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS+AL L W N N E I ++H LRE + +E +V
Sbjct: 23 KLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHQLRENAAKEQRVV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
GI I D + R + Q L+E AR +RY F+KV + I L++AHHA
Sbjct: 73 ETFCERQGIPFYIEEVD-IKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHA 131
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL R S +G +G+ ++ A +RP L +K ++
Sbjct: 132 DDQIETILMRLVRGSASIGWSGIQPKRELKGGQA--------------IRPFLPITKAEI 177
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q + D +N S + RNR R L
Sbjct: 178 IDYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|357391278|ref|YP_004906119.1| putative tRNA(Ile)-lysidine synthase [Kitasatospora setae KM-6054]
gi|311897755|dbj|BAJ30163.1| putative tRNA(Ile)-lysidine synthase [Kitasatospora setae KM-6054]
Length = 375
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 37/208 (17%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DSMAL TA F EA + + A+TVDHGL++ S E A V+
Sbjct: 77 VLVAVSGGADSMALATATA------F----EAPKLGLRVGAVTVDHGLQDGSAERAEQVA 126
Query: 145 HRVSDMG---IRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
R+ ++G + VR ++G + AARD RY +H +L+ H
Sbjct: 127 VRLRELGLDPVEAVAVRVG------REGGPENAARDARYAALDLAAERHGALAVLLGHTR 180
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE +L L+R SG LAGM + RPLL+ +
Sbjct: 181 DDQAETVLLGLARGSGARSLAGMPAQKGRYR------------------RPLLELDRAAT 222
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ C + +DP N P + R+R+R
Sbjct: 223 RQACSAQSIPVWDDPHNTDPAYTRSRVR 250
>gi|311112392|ref|YP_003983614.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931]
gi|310943886|gb|ADP40180.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931]
Length = 398
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 98/211 (46%), Gaps = 42/211 (19%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGGPDS+AL + A + + G A+ VDHGL+ +S E A + +++
Sbjct: 62 SGGPDSLALACIAAHFARRSDVRVG----------AVVVDHGLQADSAEVAASTAETLTN 111
Query: 150 MG---IRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGV--LLIAHHAD 202
+G +R E V+ QG + + AAR RY F+ C H G +L+ H D
Sbjct: 112 LGLYPVRTECVQV-------PQGSMGPEMAARTARYSAFE--CAVHNTGARAVLLGHTLD 162
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE +L L R SG LAGM ++I + Y +RP L + DM
Sbjct: 163 DQAETVLLGLGRGSGTRSLAGMP-PARIENGVTY-------------LRPFLALRRADML 208
Query: 263 KICQG-GNRDWVEDPTNRSPLFVRNRIRMSL 292
IC+ G W DPTN +R RIR ++
Sbjct: 209 NICEAEGATPW-NDPTNTDQTLMRARIRHTI 238
>gi|240141698|ref|YP_002966178.1| tRNA(Ile)-lysidine synthase [Methylobacterium extorquens AM1]
gi|240011675|gb|ACS42901.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase,
tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein
[Methylobacterium extorquens AM1]
Length = 342
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 90/200 (45%), Gaps = 31/200 (15%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P L VSGGPDS AL + AG D TVDH LR S +E
Sbjct: 22 EPARPALLAVSGGPDSTAL-----------MHAAARAGR--DRFRVATVDHALRPGSADE 68
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V +++G+ I+ D P+ G +Q +AR RYRL G++L A
Sbjct: 69 ALGVGRLATELGLVHTILTWDA----PRHGSRIQASARGARYRLLTDHAAGIGAGLILTA 124
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H DDQAE ++RL SG GLAGM ++ + I LVRP L SK
Sbjct: 125 HTLDDQAETVLMRLIAGSGPSGLAGM-REERVLAP------------GIRLVRPFLSLSK 171
Query: 259 DDMYKICQGGNRDWVEDPTN 278
D+ C+ ++ DP+N
Sbjct: 172 ADLVAYCEMHRLPFLRDPSN 191
>gi|339637639|emb|CCC16592.1| tRNA(Ile)-lysidine synthase [Lactobacillus pentosus IG1]
Length = 448
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 29/224 (12%)
Query: 68 EAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F+RR+A A L P + + VS G DSM L L L+
Sbjct: 5 QKFNRRLAAARLLSPQVTVVVAVSTGVDSMVLLQLLQQLPVTERPH----------LVVA 54
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQK 185
V+H LR +S+ EA + H + + ++ DW P+ G ++ A R RYR F K
Sbjct: 55 HVNHHLRAQSQTEAAYLQHYCQEHQLNLKL--ADWQATDHPEHG-VEAAGRQFRYRFFTK 111
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V +L AHHA+DQ E ++++L+R + L G+A S+ F+
Sbjct: 112 VMQATGAKAVLTAHHANDQVETYLMKLARGGDIAQLTGIA-DSRPFAGGQ---------- 160
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LVRPLLD+SK ++ + + ED TN+ RNR+R
Sbjct: 161 ---LVRPLLDWSKAELRDYAAQHDVTYFEDATNQDVQLTRNRVR 201
>gi|116493275|ref|YP_805010.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC
25745]
gi|116103425|gb|ABJ68568.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC
25745]
Length = 456
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 31/213 (14%)
Query: 123 LLAITVDHGLREESKEEANIV-----SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
L+ V+H LRE+S EE + H+++ M DW + Q ++ AAR+
Sbjct: 49 LIVAHVNHQLREQSIEEERFLHKWCRQHQITFM-------ETDWPKSQHPQHGVEAAARE 101
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY F++V VLL AH+AD+QAE F++++ R + L G+ +
Sbjct: 102 FRYTFFKQVMHDQHAQVLLTAHNADEQAENFVMQVIRGGWLNQLNGIPERRTFAQGW--- 158
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L+RP L F+K + + Q W ED TNR+ F+RNR+R +
Sbjct: 159 -----------LIRPFLKFTKQFLIETAQENKLRWFEDQTNRTTEFLRNRVRNEI----I 203
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAV 330
+F+ E V+ + + + SNL+++ V
Sbjct: 204 PAFRKENPRVVEHIQHYQDQLLE-QSNLVDQVV 235
>gi|114776817|ref|ZP_01451860.1| PP-loop [Mariprofundus ferrooxydans PV-1]
gi|114552903|gb|EAU55334.1| PP-loop [Mariprofundus ferrooxydans PV-1]
Length = 324
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
RM M GL +A+G SGG DS AL ++ Q G + A VDHG
Sbjct: 11 RMQMDGLPAE--VAVGWSGGADSTALLLM--------LQQQGYR------VQAWHVDHGW 54
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
RE S +E +++ + I ++ R GR ++ AR RY F++ I
Sbjct: 55 RESSIKETELLAEKARGWEIELQVARLPAPSGRNREAE----ARKGRYAQFEQWSEATGI 110
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL-LVR 251
L + HH DDQAE +R+ + +G+ G GM + H L + R
Sbjct: 111 TTLCLGHHRDDQAETVCMRMLQGAGISGCRGM---------------QQRRRHGRLDIFR 155
Query: 252 PLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
PLL ++ + + +W+EDP+N RNRIR L
Sbjct: 156 PLLQVKAGELKAALRAADINWLEDPSNNDMTIWRNRIRQGL 196
>gi|443245488|ref|YP_007378713.1| tRNA(Ile)-lysidine synthase [Nonlabens dokdonensis DSW-6]
gi|442802887|gb|AGC78692.1| tRNA(Ile)-lysidine synthase [Nonlabens dokdonensis DSW-6]
Length = 443
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 34/210 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
IA+ SGG DS+ L L K L I + LR ES ++ + V
Sbjct: 21 IAVACSGGKDSVVLAHLLHACKLK--------------LELIHCNFNLRGAESDQDEDFV 66
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + + IV D + + G +Q AARD+RY F + ++I +L+AHH D
Sbjct: 67 KALATRLEHKIHIVHFDTTNVAEQGGISIQMAARDLRYEAFNTIVSDNKIAHVLVAHHID 126
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E F++ L R +G+ GL G +++ + +++RPLLDFS ++
Sbjct: 127 DQLETFLINLGRGAGIHGLTG------------------IRDRNGIILRPLLDFSSKEIE 168
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ W ED +N S ++RN++R L
Sbjct: 169 EYALQNKIKWREDSSNASTKYLRNKLRHDL 198
>gi|330504227|ref|YP_004381096.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01]
gi|328918513|gb|AEB59344.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01]
Length = 440
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 103/231 (44%), Gaps = 36/231 (15%)
Query: 60 LTDMT-KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGE 118
+TD+T + R+A M P RIA SGG DS L L A W E
Sbjct: 1 MTDLTIRLRQA----MQPWRTAPAWRIAF--SGGLDSSVLLHLLAAWAR---------YE 45
Query: 119 FIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDM 178
+ L AI V HGL+ + + + +GI +IVR G L++AAR +
Sbjct: 46 ELPALSAIHVHHGLQPAADGWPEHCAQVCTRLGIPLDIVRVQVAPG----ASLEQAARRV 101
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY F + + VLL A H DDQAE + RL R +GV GLA M S +
Sbjct: 102 RYAAFAERLGSGE--VLLGAQHRDDQAETLLFRLLRGAGVRGLAAMPASRPLGQGS---- 155
Query: 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LVRPLLD S+ ++ Q WVEDP+N F RN +R
Sbjct: 156 ----------LVRPLLDCSRAELQAYAQRRGLAWVEDPSNADERFSRNFLR 196
>gi|257877908|ref|ZP_05657561.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257812074|gb|EEV40894.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 466
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 93/209 (44%), Gaps = 26/209 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R L VS G DSM L + F Q + V+H LR S +EA +
Sbjct: 20 RFLLAVSTGVDSMVLLQI--------FCQLFPEMQKEPCFGVAHVNHQLRPASAKEAAFL 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ GI RC W + P + ++ +AR+ RY F V Q VLL AHH+DD
Sbjct: 72 RQYCQERGIPF-YERC-WEN--PPETGVEASARNFRYTFFADVMSQEGYDVLLTAHHSDD 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E ++++ R + GM Q F H+ +L+RPLL SK +Y
Sbjct: 128 QVETMLMKMMREGRLRSAGGMK-QQQPF-------------HTGILLRPLLTVSKAAIYD 173
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q + ED +N PL++RNR+R +
Sbjct: 174 YAQAQQIPYFEDESNHEPLYLRNRLRQQV 202
>gi|313884543|ref|ZP_07818304.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620327|gb|EFR31755.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola
ACS-139-V-Col8]
Length = 492
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 145/325 (44%), Gaps = 32/325 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ +GVSGG DSM L L NQ E ++ +H LR ++ +A++V
Sbjct: 23 KLVMGVSGGLDSMVLLDLMIKLLALKENQGKE-------IIVAHFNHHLRSDADLDASLV 75
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I +W + P + + AR+ RY F V Q VL+ AHH++D
Sbjct: 76 ESFCHHHQLTYFI--GEWQE--PSHKNTESLAREARYHFFANVLAASQSQVLVTAHHSND 131
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
AE ++RL R + GLAG+ +S +I ++ D + + LVRPLL SK ++
Sbjct: 132 LAETLMIRLIRGTSFKGLAGIRRYSQRILTT------DQGQGVATDLVRPLLSISKAELL 185
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL---GDLSSCSFKSELQAVISACRRTRSYVE 319
+ ++ ED TN S +RNR+R L + + F + L+++ A +Y E
Sbjct: 186 DYAEHFKLEYREDSTNSSRHHLRNRVRQDLLPWLEGENPQFLANLESMTQAA--AEAYQE 243
Query: 320 HVCSNLINEAVTVM---DQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 376
+ + + E V+ + G+ IL+ + S+ + FI +R GS
Sbjct: 244 NFETYMAQEDQLVLALGENGW------ILDRPTWRQLSASRRRTFLTIFIEERLIADLGS 297
Query: 377 TSKLLLHYIRTFPCKTSLTAAGCYL 401
+K LL + C T+ G L
Sbjct: 298 YNKRLLDQLDQLICDTASPNQGLNL 322
>gi|312872556|ref|ZP_07732624.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1]
gi|311091918|gb|EFQ50294.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1]
Length = 430
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 106/229 (46%), Gaps = 33/229 (14%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYQLQLE--ETKWDAPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNS------- 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLVRPLL FSK+++ + +V D TN+ +RNR+R
Sbjct: 157 -------LLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQENETLRNRLR 198
>gi|46906451|ref|YP_012840.1| hypoxanthine phosphoribosyltransferase, fusion [Listeria
monocytogenes serotype 4b str. F2365]
gi|405751435|ref|YP_006674900.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2378]
gi|424713083|ref|YP_007013798.1| Bifunctional protein tilS/hprT [Listeria monocytogenes serotype 4b
str. LL195]
gi|61216556|sp|Q724J4.1|TILS_LISMF RecName: Full=Bifunctional protein TilS/HprT; Includes: RecName:
Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
Full=Hypoxanthine-guanine phosphoribosyltransferase;
Short=HGPRT; Short=HGPRTase
gi|46879715|gb|AAT03017.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes serotype 4b str. F2365]
gi|404220635|emb|CBY71998.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2378]
gi|424012267|emb|CCO62807.1| Bifunctional protein tilS/hprT [Listeria monocytogenes serotype 4b
str. LL195]
Length = 648
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 27/216 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 EQNVVETFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ A +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K ++ Q + D +N S + RNR R L
Sbjct: 173 TKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|309809607|ref|ZP_07703464.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D]
gi|308170088|gb|EFO72124.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D]
Length = 430
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 33/229 (14%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNS------- 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLVRPLL FSK+++ + ++ D TN+ +RNR+R
Sbjct: 157 -------LLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|222111278|ref|YP_002553542.1| tRNA(ile)-lysidine synthetase [Acidovorax ebreus TPSY]
gi|221730722|gb|ACM33542.1| tRNA(Ile)-lysidine synthetase [Acidovorax ebreus TPSY]
Length = 335
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 96/223 (43%), Gaps = 35/223 (15%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
A+A +P +A+ +SGG DS AL + A + ++A V HGL+
Sbjct: 8 AVAAFRPRLPLAVALSGGADSTALLLACAA-------------RWPGQVVAFHVHHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCI----Q 189
+ +GI + R +D R G E AAR +RY+ F+ + + Q
Sbjct: 55 AADGFEQHCVALCERLGIPLWVRR---VDARHAAGQSPEDAARQVRYKAFEALALDCQAQ 111
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + +A HADDQ E +L LSR +GV GLA M Q +
Sbjct: 112 AAIKTIALAQHADDQVETLLLALSRGAGVAGLAAMPAQWQ--------------RAGMDW 157
Query: 250 VRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RPLL + D+ + WVEDPTN F RNRIR L
Sbjct: 158 CRPLLRVAGADVRAWLVARDERWVEDPTNADERFTRNRIRRQL 200
>gi|365852732|ref|ZP_09393089.1| tRNA(Ile)-lysidine synthetase [Lactobacillus parafarraginis F0439]
gi|363714308|gb|EHL97841.1| tRNA(Ile)-lysidine synthetase [Lactobacillus parafarraginis F0439]
Length = 466
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 128/303 (42%), Gaps = 62/303 (20%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VS G DSM L L T ++ E I VDH LR++S++E +
Sbjct: 22 RVVVAVSTGVDSMVLLDLLHHLAT-------KSPEVI----VAYVDHQLRDQSRQETAFI 70
Query: 144 S-----HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
H+++ + W + G ++ AAR RYR F +V + VLL A
Sbjct: 71 KDYCQIHQLT-------LAMTTWPKAQHPGGGIETAARKFRYRFFGQVLDKWHATVLLTA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DD AE +++L R + L G+A I + LVRPLLD SK
Sbjct: 124 HHGDDLAETMLMKLVRGGQLASLVGIADCRSIANGK--------------LVRPLLDMSK 169
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYV 318
++ + W ED TNR RNRIR + K E V+ R R Y
Sbjct: 170 QEIRGYAADQHLTWFEDATNRDLGIERNRIRHQV----LPELKRENPHVL---RHFREYS 222
Query: 319 EHVCSNL----------INEAVT-VMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFIC 367
+ + L ++ A T DQ V++L L S+ + L+L+L F+
Sbjct: 223 QQLTDYLDATDELVGAAVDHAATKSSDQNEMVLNLNQLPTSR-------QGLSLILAFVI 275
Query: 368 QRQ 370
+++
Sbjct: 276 EKR 278
>gi|218533183|ref|YP_002423999.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens CM4]
gi|218525486|gb|ACK86071.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens CM4]
Length = 347
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT 127
E +R +A +P L VSGGPDS AL + AG D L T
Sbjct: 10 ERLARALAPFLEEPARPALLAVSGGPDSTAL-----------MHAAARAGR--DLLHVAT 56
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKV 186
VDH LR S +EA V +++G+ I+ D P+ G +Q +AR RY+L
Sbjct: 57 VDHALRPGSADEALGVGRLAAELGLVHTILTWDA----PRHGSRIQASARGARYKLLTDH 112
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ G++L AH DDQAE ++RL SG GLAGM +
Sbjct: 113 AARIGAGLILTAHTLDDQAETVLMRLIAGSGPSGLAGMRDERPLAP-------------G 159
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278
I LVRP L SK D+ C+ ++ DP+N
Sbjct: 160 IRLVRPFLSLSKADLVAYCEMHRLPFLRDPSN 191
>gi|254854449|ref|ZP_05243797.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|300766352|ref|ZP_07076311.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017]
gi|404279769|ref|YP_006680667.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2755]
gi|404285586|ref|YP_006692172.1| bifunctional protein TilS/HprT [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|258607849|gb|EEW20457.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|300512951|gb|EFK40039.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017]
gi|404226404|emb|CBY47809.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2755]
gi|404244515|emb|CBY02740.1| bifunctional protein TilS/HprT [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 648
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 27/216 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 EQNVVEAFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ A +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K ++ Q + D +N S + RNR R L
Sbjct: 173 TKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|349611837|ref|ZP_08891067.1| hypothetical protein HMPREF1027_00494 [Lactobacillus sp. 7_1_47FAA]
gi|348608302|gb|EGY58287.1| hypothetical protein HMPREF1027_00494 [Lactobacillus sp. 7_1_47FAA]
Length = 430
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 33/229 (14%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESEIITKYCQQYKLQLE--ETKWDTPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNS------- 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLVRPLL FSK+++ + ++ D TN+ +RNR+R
Sbjct: 157 -------LLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|226309708|ref|YP_002769602.1| tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC 100599]
gi|226092656|dbj|BAH41098.1| putative tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC
100599]
Length = 475
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 119/257 (46%), Gaps = 29/257 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P + +G+SGG DS AL + A + ++ L A+ ++HG R EE++
Sbjct: 15 LLPGESVVVGISGGNDSTALLHILASL--------NKQYQYQWKLHAVHLNHGFRGEEAR 66
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLL 196
++A ++G+ + D K G QEA+RD+RYRL+++V + L
Sbjct: 67 QDALYAEELCRELGVVFHLFEYDVPAYMEKTGLGGQEASRDIRYRLYREVGLAQGATKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E + R R S + GL GM L + I LVRPLL
Sbjct: 127 LAHHADDQVETILFRFVRGSRLNGLTGMPKRRM------------LADCPIELVRPLLHK 174
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSELQAVISACRR 313
++ ++ C+ ED +N+S + RN +R M L + + ++ + A A R+
Sbjct: 175 TRQELEGYCREHQLVPREDSSNQSRKYTRNLLRLDVMPLLEKVNDKYREHILATAEAIRQ 234
Query: 314 TRSYVEHVCSNLINEAV 330
E + L NE +
Sbjct: 235 D----EALLMRLANEQL 247
>gi|146299894|ref|YP_001194485.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
gi|146154312|gb|ABQ05166.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
Length = 436
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 23/168 (13%)
Query: 171 LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230
+Q AAR++RY F ++ + LL AHHADD E FI+ L+R +G+ GL G+
Sbjct: 95 IQVAARELRYSWFYELLEEKHFDYLLTAHHADDNLETFIINLTRGTGLDGLTGIP----- 149
Query: 231 FSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM 290
+ ++RPLL FS++++ K Q N +W ED +N S +VRN+IR
Sbjct: 150 -------------EQNDKIIRPLLPFSREEILKYAQENNIEWREDSSNASTKYVRNKIRH 196
Query: 291 SLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYA 338
L + K + A ++T+S+++ ++ +A V+ Q A
Sbjct: 197 DLVPV----LKQINPNFLDAFQKTQSFLQE-SKEMVEDASIVIYQQVA 239
>gi|295698551|ref|YP_003603206.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia
pediculicola USDA]
gi|291157496|gb|ADD79941.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia
pediculicola USDA]
Length = 454
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 37/223 (16%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131
++ L P ++ +G SGG DS L +L K ID L AI ++H
Sbjct: 13 KLISKSLNPFKKVLVGFSGGMDSTVLLHILMTLRKLKKIK--------ID-LRAIHINHH 63
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGR----PKQGHLQEAARDMRYRLFQKVC 187
L++ES N+ + C++ + +L R K+ ++ +R +RYR + V
Sbjct: 64 LQKES----NLWESHCKKI---CDLWKISFLSKRVKISSKKYGVESESRAIRYREMRNVL 116
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
+ V++ AHH DDQAE F+L L R SG GL+ M F + S HD KN
Sbjct: 117 RPKE--VIMTAHHIDDQAETFLLALKRGSGPSGLSSMKFIT--------SFHD--KN--- 161
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM 290
+VRPLL F K + K + W+ED +N LF RN +R+
Sbjct: 162 -IVRPLLSFEKTQLKKYAEENRLSWIEDQSNFQDLFDRNFLRI 203
>gi|320160301|ref|YP_004173525.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1]
gi|319994154|dbj|BAJ62925.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1]
Length = 476
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 25/212 (11%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
+ P + LGVSGG DS LC+L GFN L+ +H LR E++
Sbjct: 17 ISPESPLVLGVSGGADS--LCLLDVL-HRAGFN-----------LIVAHFNHRLRPEAES 62
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EA+ V + G+R E+ + + L +QG ++EAAR+ RY V Q Q + +
Sbjct: 63 EADWVCAQAQQRGLRVELGQGEVLAMAKEQGMSIEEAAREARYSFLFSVAHQVQAQAVAV 122
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AH A DQ E ++ L R +G GL GM + + ++ + LVRP+L
Sbjct: 123 AHTASDQVETVLMHLIRGTGHKGLTGMPYRG-FLNQFSTTTP---------LVRPMLSIW 172
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++++ C W+EDP+NR F RNR+R
Sbjct: 173 REEVLAYCHERGLTWLEDPSNRDVRFTRNRLR 204
>gi|83772767|dbj|BAE62895.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869380|gb|EIT78579.1| PP-loop family protein [Aspergillus oryzae 3.042]
Length = 586
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 95/247 (38%), Gaps = 56/247 (22%)
Query: 96 MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI--- 152
MAL L+ W+ N + A VDH REES EAN VS + D+GI
Sbjct: 1 MALAYLSKQWEKSRPND--------ISVTAFVVDHKAREESTREANTVSQWLQDIGIYAS 52
Query: 153 ------------------RCEIVRCDWLDGRP---KQGHLQEAARDMRYRLFQKVCIQHQ 191
+ EI+ W + K + AR +R++ K C Q
Sbjct: 53 PYTLAFNTKQMLTRKLGVKSEILELTWPESTKSPSKVTAFETHARRLRFQALGKACRDRQ 112
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI------------FSSYAYSCH 239
I LL+ HH DD E + RL + GLAG+ ++I SSY
Sbjct: 113 IEALLMGHHQDDTVETTLWRLCTGAKGAGLAGIPEVTRIPECHGIYGVSESGSSYTIPSR 172
Query: 240 DD-----------LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNR 287
+ IL+ RPLL F K + C N +V DPTN P L RN
Sbjct: 173 PQRSSAQARNDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSDPTNFDPTLTPRNA 232
Query: 288 IRMSLGD 294
IR L +
Sbjct: 233 IRSLLAE 239
>gi|421874188|ref|ZP_16305795.1| tRNA(Ile)-lysidine synthetase [Brevibacillus laterosporus GI-9]
gi|372456843|emb|CCF15344.1| tRNA(Ile)-lysidine synthetase [Brevibacillus laterosporus GI-9]
Length = 461
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 39/297 (13%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
PH I +GVSGG DS AL + ++ E ++ L A+ ++HG R +ES ++
Sbjct: 2 PHESIVVGVSGGVDSTALLHI--------LSKMNEQYQYGWKLYAVHLNHGFRGDESDQD 53
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPK------QGHLQEAARDMRYRLFQKVCIQHQIG 193
A V +G++C + + P+ QG Q A+R++RY+ +++V +
Sbjct: 54 AAYVEDLCHTLGVKC----YSFYESVPEIMKETGQGP-QVASRELRYQYYRQVAKEVGAT 108
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253
+ +AHHADDQ E + R+ R + + G GM + + I LVRPL
Sbjct: 109 KVALAHHADDQVETILFRMMRGTSLHGFTGMPQRRWLHAE------------QIELVRPL 156
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISA 310
L ++++ C+ N D +N S + RN +R + + ++ + +
Sbjct: 157 LHVFREELEAYCEANNLQPRHDSSNDSRKYKRNLLRHEVTPHLQQVNLRYREHVLQLAEM 216
Query: 311 CRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLS-KFLALVLQFI 366
R Y++ + +N + + ++D + L K D+ L + + L+L ++
Sbjct: 217 ARVDDDYLQKLSQEALNRIIVKQESDKIILDRKCL---KTFDLALQRRMIPLILSYL 270
>gi|347819430|ref|ZP_08872864.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 336
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM P +A+G+SGG DS AL + A + + A+ V HGL+
Sbjct: 20 AMRAFAPALPLAVGLSGGADSTALLLACAR-------------RWPGRVRAVHVHHGLQA 66
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQ-- 191
++ D+ + + R LD RP G E AAR RYR F+ + + +
Sbjct: 67 AAEGFERHCIALCQDLDVPLTVQR---LDARPAPGQSPEDAARQARYRAFEALALDRRAQ 123
Query: 192 ---IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ + +A HADDQAE +L L R +GV GLA M + ++
Sbjct: 124 RDAMQSMALAQHADDQAETLLLALLRGAGVAGLAAMPAR--------------WERAGVV 169
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RPLL + D+ + + +DWVEDP+N F RNRIR L
Sbjct: 170 WHRPLLQVAGADVRQWLRAQGQDWVEDPSNADERFTRNRIRARL 213
>gi|425055293|ref|ZP_18458774.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium 505]
gi|403034235|gb|EJY45699.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium 505]
Length = 481
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI VSGG DSM L +L + GF+ L + ++H LREES EEA
Sbjct: 32 RILAAVSGGVDSMVLLHLLLQAQRQIGFS-----------LGVVHINHQLREESAEEAAY 80
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + + W D P + ++ AAR+ RY+ F +V + Q L+ AHH D
Sbjct: 81 LRSYCEKKNLPLYV--SVWED--PAKTAIETAARNFRYQAFTRVMKEEQYDTLMTAHHGD 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++++ R + +G+ Q F++ LVRPLL FSK+++Y
Sbjct: 137 DQIETVLMKIIRGGQLSTFSGIK-EVQPFATGR-------------LVRPLLSFSKEELY 182
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ED TN+ RNR+R
Sbjct: 183 AYAAESQLVYFEDQTNQLLDVQRNRLR 209
>gi|167518720|ref|XP_001743700.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777662|gb|EDQ91278.1| predicted protein [Monosiga brevicollis MX1]
Length = 475
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 102/238 (42%), Gaps = 32/238 (13%)
Query: 74 MAMAGLKPHHRIALGVSGGPD--------SMALCVLTAGWKTGGFNQNGEAGEFIDGL-- 123
+A GL+ + + VSGGPD SMA C + W G + + L
Sbjct: 13 LARCGLQDARNLLVAVSGGPDRCEWDDATSMATCAMC--WLIGHAPACICSMALVHALHQ 70
Query: 124 ------LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
A VDH LR ES +EA+ V + I C + W + + Q AR
Sbjct: 71 QQPGRVRAHLVDHRLRPESTDEAHQVMSELQRHSIVCGMSTLQWAAA--PRSNTQALART 128
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY QH +L AHHADDQ E ++R+ SG++G G+ + S
Sbjct: 129 ERYNALVAAAHQHGCQAILTAHHADDQVETILMRICNLSGLVGALGIRARAHWRS----- 183
Query: 238 CHDDLKNHSIL--LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG 293
+ H + L RPLL +K D+ + CQ + V D +N S + RNR+R +L
Sbjct: 184 -----ERHGLQAPLARPLLHLTKADLVQYCQTNDVRTVNDCSNDSDKYERNRLRFALA 236
>gi|315653940|ref|ZP_07906856.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus iners ATCC 55195]
gi|315488636|gb|EFU78282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus iners ATCC 55195]
Length = 418
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 97/207 (46%), Gaps = 28/207 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I L +S GPDSMAL + +Q L+ VDH LR +S E+ I+
Sbjct: 7 KIILAISAGPDSMALLDMMRQIVDDPQSQ----------LIICHVDHCLRNDSYLESKII 56
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ E + W P G L+ AARD RY F K+ ++Q L AHH DD
Sbjct: 57 TKYCQQYQLQLEETK--WDAPHPANG-LEAAARDFRYDFFAKILRKYQADYLFTAHHGDD 113
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
AE +++L R+ V + + + I +S LLVRPLL FSK+++
Sbjct: 114 LAENILIKLLRSGNVQEMNSLRPIRNWIDNS--------------LLVRPLLSFSKEELL 159
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ +V D TN+ +RNR+R
Sbjct: 160 VYAKKRKLAYVVDYTNQENETLRNRLR 186
>gi|170738632|ref|YP_001767287.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46]
gi|226695542|sp|B0UGN1.1|TILS_METS4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|168192906|gb|ACA14853.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46]
Length = 344
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGGPDS AL A +L TVDHGLR ES EEA V+
Sbjct: 32 LAVSGGPDSTALMGCAAALPP------------RVPVLVATVDHGLRPESGEEAAGVAAL 79
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+G+ I+ W +P+ LQEAAR RY L + + G +L AH DDQAE
Sbjct: 80 AGRLGLPHRIL--TWRGEKPRT-RLQEAARAARYDLLLGLAREAGAGAILTAHTLDDQAE 136
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
++RL SG GLAG+A + ++ P LD K + C
Sbjct: 137 TVLMRLCAGSGPAGLAGIAPARRLGGLLLGR--------------PFLDLPKARLVATCA 182
Query: 267 GGNRDWVEDPTN 278
+ DP N
Sbjct: 183 AAGWPFAVDPGN 194
>gi|319654930|ref|ZP_08009004.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
gi|317393355|gb|EFV74119.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
Length = 462
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
+I +GVSGGPDS+AL L W + + L+A VDH R EES ++A
Sbjct: 21 KIVVGVSGGPDSIAL--LHYFW--------NQRQQLQIELIAAHVDHMFRGEESFQDAMF 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHL-QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V I E+ R + + K G Q AARD RY +Q+ ++ + + HH
Sbjct: 71 VKDYCRKKAIPFEMERANVPEYMEKSGKSSQTAARDCRYSFYQRTAKKYGAEYIALGHHG 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL+R S AG+ F + F Y ++RP L ++ ++
Sbjct: 131 DDQVETILMRLTRGSTGSARAGIPF-KRPFGDY-------------FIIRPFLCLNRAEI 176
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
C + DP+N ++ RNR R +
Sbjct: 177 EDYCLKERLNPRRDPSNEKGIYSRNRFRQEV 207
>gi|260431105|ref|ZP_05785076.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414933|gb|EEX08192.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 417
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 107/221 (48%), Gaps = 29/221 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLLAITVDHGLREESKEEANI 142
R+ + VSGG DS AL L + E D L A TVDHGLR ES EA
Sbjct: 23 RLGVAVSGGSDSTALLHLMS-----------RIAEGTDTNLFAATVDHGLRPESAAEAAK 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ ++ I EI++ DG G+LQ+ AR RYRL + I + + H AD
Sbjct: 72 VAALCWELEIPHEILKWTGWDG---TGNLQDQARRARYRLLRDWAHAQDIPAIALGHTAD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++RL R +GV GL+ M ++F A LVRPLL ++ +
Sbjct: 129 DQAETVLMRLGRAAGVTGLSAMPV-VRMFDGVA-------------LVRPLLFATRSQLR 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE 303
DW+EDP+N++ F R + R SLG L+ +E
Sbjct: 175 DYLVAQAIDWMEDPSNQNIRFDRIKARQSLGQLAELGISAE 215
>gi|103487083|ref|YP_616644.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis
RB2256]
gi|98977160|gb|ABF53311.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis
RB2256]
Length = 284
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 22/170 (12%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
+ A TVDHGLR+ S +EA +V+ + I +R P +G LQ AAR RYRL
Sbjct: 15 VWAATVDHGLRKGSDDEARMVAAFCAREHIPHSTLRP----PTPIRGSLQAAARTERYRL 70
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
++ H + ++ AHHADDQ E ++RL+R SGV GLA + +
Sbjct: 71 LEQWREAHALDHIVTAHHADDQLETIVMRLNRASGVGGLAAIRAT--------------- 115
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
N ++L RPLL + + ++ + + +++DP+N F R R+R +L
Sbjct: 116 -NGAVL--RPLLGWRRRELVDVALDNDLPFIDDPSNSDDRFDRARLRHAL 162
>gi|254829310|ref|ZP_05233997.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165]
gi|258601723|gb|EEW15048.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165]
Length = 648
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 27/216 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE + +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHQLRENAAK 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E +V GI I D + R + Q L+E AR +RY F+KV + I L+
Sbjct: 68 EQRVVETFCERQGIPFYIEEVD-IKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLV 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ A +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K ++ Q + D +N S + RNR R L
Sbjct: 173 TKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|365922011|ref|ZP_09446252.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium valvarum F0432]
gi|364575018|gb|EHM52440.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium valvarum F0432]
Length = 436
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 108/256 (42%), Gaps = 47/256 (18%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L +SGG DSMAL + L+A VDHG S E
Sbjct: 28 LALSGGRDSMALLQALVALRQ----------RLTAPLVACYVDHGWSAASGEWGAFCVRE 77
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ GIRCE++R +W + L+ AR +RY+ GVLL AHH +DQ E
Sbjct: 78 AAARGIRCEVLRLNWHTASGES--LEARARLLRYQALAARLPPR--GVLLTAHHREDQVE 133
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
F L+L R SG+ GLA M + + F+ A+ RPLLD S+ +
Sbjct: 134 TFFLQLLRGSGLDGLAAMP-AQRPFADGAH-------------WRPLLDTSRAAIEAFVA 179
Query: 267 GGNRDWVEDPTNRSPLFVRNRIR---------MSLGDLSSCSFKSELQAVISACRRTRSY 317
+++DP+N F RNR+R M+ S + +E QAV A
Sbjct: 180 AEGVPFLDDPSNVDTRFARNRLRHAGLPPLVEMAAAVARSAGWLAEAQAVQQA------- 232
Query: 318 VEHVCSNLINEAVTVM 333
+ ++ EA TV+
Sbjct: 233 ---LLDGILGEAQTVL 245
>gi|309804613|ref|ZP_07698678.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c]
gi|308166005|gb|EFO68223.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c]
Length = 430
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 33/229 (14%)
Query: 63 MTKYREAFSR-RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
M K FS+ ++++A K I L +S GPDSMAL + +Q
Sbjct: 1 MKKIINFFSKYKLSLADKK----IILAISAGPDSMALLDMMRQIVDDPQSQ--------- 47
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
L+ VDH LR +S E+ I++ ++ E W P G L+ AARD RY
Sbjct: 48 -LIICHVDHCLRNDSYLESKIITKYCQQYQLQLE--ETKWDAPHPANG-LEAAARDFRYD 103
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHD 240
F K+ ++Q L AHH DD AE +++L R+ V + + + I +S
Sbjct: 104 FFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGNVQEMNSLRPIRNWIDNS------- 156
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
LLVRPLL FSK+++ + ++ D TN+ +RNR+R
Sbjct: 157 -------LLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQENETLRNRLR 198
>gi|16802265|ref|NP_463750.1| hypothetical protein lmo0219 [Listeria monocytogenes EGD-e]
gi|47097258|ref|ZP_00234818.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes str. 1/2a F6854]
gi|254913936|ref|ZP_05263948.1| tilS/hprT [Listeria monocytogenes J2818]
gi|254938274|ref|ZP_05269971.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900]
gi|284803042|ref|YP_003414907.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578]
gi|284996183|ref|YP_003417951.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923]
gi|386045857|ref|YP_005964189.1| tilS/hprT [Listeria monocytogenes J0161]
gi|386049148|ref|YP_005967139.1| tRNA(Ile)-lysidine synthetase/Hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes FSL
R2-561]
gi|386052496|ref|YP_005970054.1| bifunctional tRNA(Ile)-lysidine synthetase/Hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes
Finland 1998]
gi|404282650|ref|YP_006683547.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2372]
gi|404412319|ref|YP_006697906.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC7179]
gi|405757206|ref|YP_006686482.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2479]
gi|61216688|sp|Q8YAC7.1|TILS_LISMO RecName: Full=Bifunctional protein TilS/HprT; Includes: RecName:
Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
Full=Hypoxanthine-guanine phosphoribosyltransferase;
Short=HGPRT; Short=HGPRTase
gi|16409584|emb|CAD00746.1| fusion protein, N-terminal part similar to B. subtilis YacA
protein, C-terminal part similar to hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes EGD-e]
gi|47014358|gb|EAL05331.1| conserved hypothetical protein/hypoxanthine
phosphoribosyltransferase, fusion [Listeria
monocytogenes serotype 1/2a str. F6854]
gi|258610884|gb|EEW23492.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900]
gi|284058604|gb|ADB69545.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578]
gi|284061650|gb|ADB72589.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923]
gi|293591954|gb|EFG00289.1| tilS/hprT [Listeria monocytogenes J2818]
gi|345532848|gb|AEO02289.1| tilS/hprT [Listeria monocytogenes J0161]
gi|346422994|gb|AEO24519.1| tRNA(Ile)-lysidine synthetase/Hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes FSL
R2-561]
gi|346645147|gb|AEO37772.1| bifunctional tRNA(Ile)-lysidine synthetase/Hypoxanthine-guanine
phosphoribosyltransferase [Listeria monocytogenes
Finland 1998]
gi|404232152|emb|CBY53555.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2372]
gi|404235088|emb|CBY56490.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC2479]
gi|404238018|emb|CBY59419.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC7179]
gi|441469768|emb|CCQ19523.1| Hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes]
gi|441472904|emb|CCQ22658.1| Hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes N53-1]
Length = 648
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 27/216 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE + +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHLNHQLRENAAK 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E +V GI I D + R + Q L+E AR +RY F+KV + I L+
Sbjct: 68 EQRVVETFCERQGIPFYIEEVD-IKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLV 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ A +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K ++ Q + D +N S + RNR R L
Sbjct: 173 TKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|309803800|ref|ZP_07697886.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d]
gi|308164209|gb|EFO66470.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d]
Length = 418
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 28/207 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I L +S GPDSMAL + +Q L+ VDH LR +S E+ I+
Sbjct: 7 KIILAISAGPDSMALLDMMRQIVDDPQSQ----------LIICHVDHCLRNDSYLESEII 56
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ E + W P G L+ AARD RY F K+ ++Q L AHH DD
Sbjct: 57 TKYCQQYKLQLEETK--WDTPHPANG-LEAAARDFRYDFFAKILRKYQADYLFTAHHGDD 113
Query: 204 QAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
AE +++L R+ V + + + I +S LLVRPLL FSK+++
Sbjct: 114 LAENILIKLLRSGNVQEMNSLRPIRNWIDNS--------------LLVRPLLSFSKEELL 159
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ++ D TN+ +RNR+R
Sbjct: 160 VYAKKRKLAYIVDYTNQENETLRNRLR 186
>gi|78357070|ref|YP_388519.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio alaskensis G20]
gi|78219475|gb|ABB38824.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio alaskensis G20]
Length = 357
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 102/240 (42%), Gaps = 30/240 (12%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGG DS AL ++ + A ++A+ +DH LR+ES ++A+ VS S
Sbjct: 63 SGGADSTALLLIL----------HYLAPRMGHTVVAVHLDHALRQESADDAHFVSQLCSA 112
Query: 150 MGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
GIR VR D D + L+EA R RY + K V+ HHADD E
Sbjct: 113 AGIRLFSVRTDVADLAAAGRCGLEEAGRKARYAFYAKTAALFSRPVICTGHHADDLKEDV 172
Query: 209 ILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGG 268
++RL R +G L GM + S+L RPLL K + +
Sbjct: 173 LMRLIRGAGWPALGGM--------------QAVIPERSLL--RPLLVTEKYKLTTFLEAC 216
Query: 269 NRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVEHVCSNL 325
W ED +N P F RNRIR ++ L + SF + + + A R Y V L
Sbjct: 217 RCPWREDASNSDPSFTRNRIRNTIIPLLQQENPSFGTTITELWEAAAADRDYWTDVLPEL 276
>gi|293571076|ref|ZP_06682117.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980]
gi|430842707|ref|ZP_19460619.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1007]
gi|431084341|ref|ZP_19496011.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1604]
gi|431115413|ref|ZP_19497830.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1613]
gi|431600915|ref|ZP_19522400.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1861]
gi|431739286|ref|ZP_19528223.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1972]
gi|431742250|ref|ZP_19531145.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E2039]
gi|291608859|gb|EFF38140.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980]
gi|430492931|gb|ELA69272.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1007]
gi|430564885|gb|ELB04062.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1604]
gi|430568572|gb|ELB07612.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1613]
gi|430590072|gb|ELB28157.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1861]
gi|430596116|gb|ELB33967.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1972]
gi|430600406|gb|ELB38055.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E2039]
Length = 484
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI VSGG DSM L +L + GF+ L + ++H LREES EEA
Sbjct: 35 RILAAVSGGVDSMVLLHLLLQAQRQIGFS-----------LGVVHINHQLREESAEEAAY 83
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + + W D P + ++ AAR+ RY+ F +V + Q L+ AHH D
Sbjct: 84 LRSYCEKKNLPLYV--SVWED--PAKTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGD 139
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++++ R + +G+ Q F++ LVRPLL FSK+++Y
Sbjct: 140 DQIETVLMKIIRGGQLSTFSGIK-EVQPFATGR-------------LVRPLLSFSKEELY 185
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ED TN+ RNR+R
Sbjct: 186 AYAAESQLVYFEDQTNQLLDVQRNRLR 212
>gi|266619822|ref|ZP_06112757.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479]
gi|288868610|gb|EFD00909.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479]
Length = 462
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P R+ +G+SGG DS++L ++ K E L A+ V HGLR E +
Sbjct: 19 LVPGDRVIIGLSGGADSVSLLMILHELKN----------ELNIELFAVHVHHGLRGEEAD 68
Query: 139 EANIVSHRVSD-MGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ + +S+ +G+ V + + R +EA R +RYR+ ++ + H +
Sbjct: 69 RDSAYAQELSENLGVPFVCVHANVAEYARVNGMSEEEAGRHLRYRILEEQRLAHHASKIA 128
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQAE + L R SG+ G+ GM K ++RPLL
Sbjct: 129 VAHHADDQAETVLYNLFRGSGLKGIGGM------------------KPVRDTIIRPLLSV 170
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ ++ + + ED TN ++RNR+R +
Sbjct: 171 TRKEILAYLEEKEISYCEDSTNSGTDYIRNRLRHEI 206
>gi|257899971|ref|ZP_05679624.1| PP-loop family protein [Enterococcus faecium Com15]
gi|257837883|gb|EEV62957.1| PP-loop family protein [Enterococcus faecium Com15]
Length = 481
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI VSGG DSM L +L + GF+ L + ++H LREES EEA
Sbjct: 32 RILAAVSGGVDSMVLLHLLLQAQRQIGFS-----------LGVVHINHQLREESAEEAAY 80
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + + W D P + ++ AAR+ RY+ F +V + Q L+ AHH D
Sbjct: 81 LRSYCEKKNLPLYV--SVWED--PAKTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGD 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++++ R + +G+ Q F++ LVRPLL FSK+++Y
Sbjct: 137 DQIETVLMKIIRGGQLSTFSGIK-EVQPFATGR-------------LVRPLLSFSKEELY 182
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ED TN+ RNR+R
Sbjct: 183 AYAAESQLVYFEDQTNQLLDVQRNRLR 209
>gi|158520085|ref|YP_001527955.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3]
gi|158508911|gb|ABW65878.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3]
Length = 480
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 35/271 (12%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-E 134
A + P + +GVSGGPDS+AL + E +++ V HGLR
Sbjct: 25 AMIAPGEAVLVGVSGGPDSVALLHALVRLQP----------ELAVARVSVAHVHHGLRGA 74
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
E+ + V+ +G+ + D R +++AAR RYR F H
Sbjct: 75 EADADQAFVAALAERLGLPFYTEKIDVAAAARNTGASVEDAARTARYRFFSDTAAAHGYH 134
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253
+ AHHA D AE ++ L R +G GL+G+ + ++RPL
Sbjct: 135 KIATAHHAGDNAEWVLMNLVRGAGPEGLSGIPPVREN------------------IIRPL 176
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA----VIS 309
+ S++D+ G D+VED TN F RNR+R L L + + A V
Sbjct: 177 IHVSREDILAFLTHGGMDYVEDSTNADLTFTRNRVRHHLLPLIEEHYNPGIAACLNRVAE 236
Query: 310 ACRRTRSYVEHVCSNLINEAVTVMDQGYAVI 340
R ++ + S L +AV + + G V+
Sbjct: 237 IFREESLWIRDMVSGLFEQAVLLCEPGRVVL 267
>gi|342873062|gb|EGU75294.1| hypothetical protein FOXB_14202 [Fusarium oxysporum Fo5176]
Length = 708
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 88/195 (45%), Gaps = 14/195 (7%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R A RI L +SGG DSMAL L F A + G+LA+ VDH L
Sbjct: 31 RFPTARFARPQRIVLAISGGVDSMALAFLMTK-AVRSFRGMKVADNPVHGVLALVVDHKL 89
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-----PKQ-GHLQEAARDMRYRLFQKV 186
R+ S EA+ V+ + + I+ + W + + P+Q +++ AR RYR +
Sbjct: 90 RDGSDHEASEVAKELRKLDIKASVSALSWKEEKRQGLNPRQLPNVEGLARTYRYRALGRY 149
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY----AYSC---H 239
C H L AHH+DDQ E ++RL G GL G+ ++ I Y Y
Sbjct: 150 CSYHGSNSLFFAHHSDDQYETVLMRLLGGHGYRGLQGIREANSIPECYDLHGVYKSGLLD 209
Query: 240 DDLKNHSILLVRPLL 254
D L++ L RP L
Sbjct: 210 DQLRSAPALSFRPAL 224
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDLSSCS 299
++++ +++ RPL++F KD + C+ WVED TN+ P L RN IR + + +
Sbjct: 276 EVEDGGVMIYRPLMEFDKDRLIATCEANKIPWVEDATNKDPTLTTRNAIRHL---VRNHT 332
Query: 300 FKSELQ--AVISACRRTRSYVE----HVCSNLINEAV 330
LQ A++S +R++ E LI EAV
Sbjct: 333 LPKALQKPAILSLAKRSKERTELEEAEASRYLIREAV 369
>gi|255953977|ref|XP_002567741.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589452|emb|CAP95596.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 687
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 135/342 (39%), Gaps = 88/342 (25%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT---VDHGLREESKEE 139
R + VSGG DSMAL L + E + G +++T VDH R ES E
Sbjct: 49 QRFGIAVSGGADSMALAYLC---------KQLERSSDVAGAISVTAFVVDHRARPESTIE 99
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL---------------QEAARDMRYRLFQ 184
A V+ + DM IR I+ DW D P Q L + AR +R++
Sbjct: 100 AQKVAGWLRDMDIRTHILSLDWSDTTPSQTQLSSPKSGASSPMPSAFETHARRLRFQALG 159
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLS---------------RNSGVLGLAGMA---- 225
C + ++ LL+ HH DD E I RLS R GL G +
Sbjct: 160 IACHEFKLETLLLGHHQDDNIETTIWRLSTGATGLGLGGIPEVARIPECHGLFGASESWS 219
Query: 226 -----------------FSSQIFSSYAYSCHDD--------------LKNHSILLVRPLL 254
F +Q + +D + + I + RPLL
Sbjct: 220 TTSIPTKPPTKPQPKVRFDNQKQGFITFPNPNDRTDIIYSNLTSNVKMASPGIFICRPLL 279
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDLSSCSFKSELQAVISACRR 313
F+K + + C N +V DPTN P L RN IR SL +S Q+++S R
Sbjct: 280 SFTKASLLETCHKNNVPYVSDPTNFDPTLTPRNAIR-SLRTSNSLPRALGSQSILSLIRS 338
Query: 314 TRSYVE---HVCSNLINEAVTVMD----QGYAVIDLEILNPS 348
++ ++ + + L++ ++D G AVI + L+PS
Sbjct: 339 SKDLLQRSNELSNYLLSSQCRILDFDPKAGSAVI--QFLDPS 378
>gi|390597675|gb|EIN07074.1| adenine nucleotide alpha hydrolases-like protein, partial
[Punctularia strigosozonata HHB-11173 SS5]
Length = 569
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 140/322 (43%), Gaps = 48/322 (14%)
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
A+ SGGPDS L L +G F + L++++VDH L++ S +
Sbjct: 1 AVANSGGPDSTCLLFLLKRAISGIFGPEDQIP-----LVSLSVDHKLQDSSSAMSARAEA 55
Query: 146 RVSDMGIRCEIVRCDW----LDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+G++ W +P L+ ARD+RY + + +Q G + HH
Sbjct: 56 TAKSLGVQHITSSVQWGTHPFPPKPTSHTALERRARDVRYHILFRDMVQAGAGAVAFGHH 115
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY-----AYSCHDDLKNHSILLVRPLLD 255
ADDQ EL ++R++R+S +G AGM + + + A++ ++ + S ++RP+L
Sbjct: 116 ADDQIELCLMRMARSSTEIGAAGMRYCRRWGMGHSEGQLAWAGYEGM---SRWIIRPMLG 172
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRI-------------------------- 288
F+KD + C ++ D TN P L +RN I
Sbjct: 173 FTKDRILATCDEHALEYAVDQTNFQPELTIRNSIRHLLAGNLDIPLPRQKEIDAIQQGAA 232
Query: 289 RMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPS 348
R+++ +L S + + L +++ R Y++ ++ ++ + E L
Sbjct: 233 RLNVDNLRSPAARVRLYSILEMFGEQREYIDEQVTSELSRLLVPSPPSTIAFPTEALG-- 290
Query: 349 KIED-IFLSKFLALVLQFICQR 369
KI D + L++ L +++++ R
Sbjct: 291 KITDPVVLAQLLMRIIRYVSAR 312
>gi|385825233|ref|YP_005861575.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii DPC 6026]
gi|329666677|gb|AEB92625.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii DPC 6026]
Length = 431
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
MTK+ F+ K + L SGGPDS+AL + + Q
Sbjct: 1 MTKFTTFFTENNIEIKNK---KFLLAASGGPDSVALLKMLVNFLPNPSEQ---------- 47
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYR 181
L+ +DH LR++S E+ ++ S ++ ++V W ++ P+ G ++ AR+ RY
Sbjct: 48 LIVAHLDHCLRDDSFLESQLLQRLTS--ALKVKLVEKKWPVELHPQAG-VEAKAREYRYA 104
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
KV ++Q LL AHH DD E +L+ R+ V + + QI +
Sbjct: 105 FLAKVGREYQTDYLLTAHHGDDLIENILLKFIRSGDVAEMNSL----QIVGNLG------ 154
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
S+ L+RPL+ +SKD++ K + + D++ED TN +RNR+R
Sbjct: 155 ----SMKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNFEDDTLRNRLR 198
>gi|345856179|ref|ZP_08808676.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus sp. OT]
gi|344330747|gb|EGW42028.1| tRNA(Ile)-lysidine synthetase [Desulfosporosinus sp. OT]
Length = 448
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMR 179
+ L+ V HG+R+ES E ++V + + C + R D G QEAAR+ R
Sbjct: 19 NSLVLTHVHHGVRKESDNEVDLVQTMAAKWEMPCIVHRFDSKRYAEAMGQSFQEAAREWR 78
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y +++ + +L AHH DQAE + RL R SG GLAG+ Y
Sbjct: 79 YARWREDMSKEGCDLLATAHHLGDQAETILYRLLRGSGTAGLAGI-----------YPTK 127
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
D ++RPLL F K D+ C + + D +N P+++RNRIR+ L
Sbjct: 128 DS-------IIRPLLTFRKADILDYCAREDLPYALDHSNEEPVYIRNRIRLEL 173
>gi|406671670|ref|ZP_11078909.1| tRNA(Ile)-lysidine synthetase [Facklamia hominis CCUG 36813]
gi|405580920|gb|EKB54979.1| tRNA(Ile)-lysidine synthetase [Facklamia hominis CCUG 36813]
Length = 484
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 122/291 (41%), Gaps = 39/291 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKE---- 138
+I L VSGG DSM L L + E+ D L I +H LR SKE
Sbjct: 23 KIVLAVSGGVDSMVLMRLML--------ELCHLQEYKDRHLVIAHFNHCLR--SKEIHDF 72
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
E ++V +M + + + + P + +++ AR RYR V Q L+ A
Sbjct: 73 ERDMVIKSAKEMNLTYFVSKWE----NPSESNIEANARYARYRFLADVVDATQADCLMTA 128
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DD E +RL R + + GL GM Q + H S+ ++RPL+ F K
Sbjct: 129 HHLDDAVETVFMRLIRGASIRGLMGMPSHYQRLLETSKGKHV-----SVSILRPLIGFRK 183
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL----------SSCSFKSELQAVI 308
+ +Y N + ED +N P +RNRIR L + S + +LQ
Sbjct: 184 EQLYDYAHKNNLAYNEDDSNHQPNHLRNRIRNDYLPLFESENPQFFQNLVSMQKQLQLAY 243
Query: 309 SACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL 359
A E + +I E V V+D A DLE ++I FL+ F
Sbjct: 244 QALYSMYIRKEPLLVGVIKEGVWVLDVK-AWCDLE----AEIRRTFLTIFF 289
>gi|254574078|ref|XP_002494148.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033947|emb|CAY71969.1| Hypothetical protein PAS_chr4_0708 [Komagataella pastoris GS115]
Length = 483
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 81 PH---HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
PH R+ + +SGG DSMAL L + ++ +N E ++A+TV+H R+ S+
Sbjct: 18 PHGLPRRVGISLSGGVDSMALTSLLSRYR-DEYNVGVE-------IVALTVNHEYRKGSR 69
Query: 138 EEANIVSHRVSDMGIRCEIVRCDW-LDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+EA V V+ + ++ +I+ W LD + G+ + AR RY+ QK C + I
Sbjct: 70 QEAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQH 129
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
L + H +DQ E F+LRL +NS + G+ M I S + + I +VRP+L
Sbjct: 130 LFLGHQLEDQVETFLLRLKQNSTIFGMRCM---KDISSYPSLPLYPSSVKPPIKIVRPML 186
Query: 255 DFSKDDMYKICQ 266
+ K I Q
Sbjct: 187 NIKKKRYLLILQ 198
>gi|398385288|ref|ZP_10543312.1| tRNA(Ile)-lysidine synthetase [Sphingobium sp. AP49]
gi|397720963|gb|EJK81515.1| tRNA(Ile)-lysidine synthetase [Sphingobium sp. AP49]
Length = 315
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 93/209 (44%), Gaps = 35/209 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R + VSGGPDSMAL L + + A T+DHGLR ES EA +V
Sbjct: 28 RFGIAVSGGPDSMALLDLAVQ-------------AWPGRIAAATLDHGLRAESAAEAAMV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ I + + P G++Q+ AR RY + + +L AHHADD
Sbjct: 75 ARWCAERRIPHATLAPE----APVSGNVQDWARRQRYAQLEAWRAGAGLDWILTAHHADD 130
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E ++RL+R SGV GLAG+ + + ++RPLL K +
Sbjct: 131 QLETLLMRLNRGSGVGGLAGV------------------RGRTGRVLRPLLAVRKVALQA 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+V DP+N P F R +R L
Sbjct: 173 HADQAGLPYVLDPSNADPKFDRAALRRRL 201
>gi|373495309|ref|ZP_09585895.1| hypothetical protein HMPREF0380_01533 [Eubacterium infirmum F0142]
gi|371965175|gb|EHO82676.1| hypothetical protein HMPREF0380_01533 [Eubacterium infirmum F0142]
Length = 486
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 125/294 (42%), Gaps = 54/294 (18%)
Query: 79 LKPHHRIALGVSGGPDSMAL----CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
+ + I +G+SGG DS+ L C L+ L + ++HGLRE
Sbjct: 23 ISENEHIVIGLSGGADSLCLFDILCRLSDSMNLK--------------LYPVHINHGLRE 68
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
E+ E+ + +D I C + D + R K +EA R +RY F +V + G
Sbjct: 69 EACEDEKFCTKLCADKNIECRVYGFDCEEYAREKNISTEEAGRILRYTAFAEVFDEIAEG 128
Query: 194 -------VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ +A +ADD+AE + R+ R +G GL G+ H
Sbjct: 129 GTPREKIKIAVAQNADDRAETVLFRIMRGTGTDGLVGIK-------------HMRCDEQG 175
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL----SSCSFKS 302
++RPLLD K D+ + C+ + D TN ++ RNRIR+SL L + FK
Sbjct: 176 RQIIRPLLDTYKSDINEYCELQGLNPQIDKTNFEEIYNRNRIRLSLIPLIEEKYNPEFKK 235
Query: 303 ELQAVISACRRTRSYVEH--------VCSNLINEAVTVMDQGYAVIDLEILNPS 348
L + + R ++E+ + N EA ++ G +D+ L+PS
Sbjct: 236 ALNRLALSAEEDRLFLENLACDELEKITKNFSKEANKIILSG---VDISELDPS 286
>gi|357014529|ref|ZP_09079528.1| tRNA(Ile)-lysidine synthetase [Paenibacillus elgii B69]
Length = 477
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 25/218 (11%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EE 135
A ++P + + VSGGPDS+ L L +G + L V+HG R E
Sbjct: 19 ALIEPGDGVVVAVSGGPDSVGLLHLLFAL----------SGRYRLRLTVAHVNHGFRGAE 68
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGV 194
+ EA +V G+ E D + G + Q AARD RY V +
Sbjct: 69 ADREAEMVKSLAERWGLPVETTFIDMPRIIEETGRNSQAAARDKRYEFLFDVARRTGSRR 128
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+ +AHHADDQAE ++RL R +G GL+G+ + + + L+RPLL
Sbjct: 129 IALAHHADDQAETVLMRLLRGTGPTGLSGIPVRR-------------MAENGLELIRPLL 175
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
K D+ + C+ + D +N +VRN++RM +
Sbjct: 176 RIYKADIIRYCEAEGLPYCTDSSNLERKYVRNQVRMDV 213
>gi|42518368|ref|NP_964298.1| hypothetical protein LJ0281 [Lactobacillus johnsonii NCC 533]
gi|417838722|ref|ZP_12484960.1| tRNA-lysidine synthetase [Lactobacillus johnsonii pf01]
gi|61216579|sp|Q74LA3.1|TILS_LACJO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|41582653|gb|AAS08264.1| hypothetical protein LJ_0281 [Lactobacillus johnsonii NCC 533]
gi|338762265|gb|EGP13534.1| tRNA-lysidine synthetase [Lactobacillus johnsonii pf01]
Length = 431
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
MTK+ F+ K + L SGGPDS+AL + + Q
Sbjct: 1 MTKFTTFFTENNIEIKNK---KFLLAASGGPDSVALLKMLVNFLPNPSEQ---------- 47
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYR 181
L+ +DH LR++S E+ ++ S ++ ++V W ++ P+ G ++ AR+ RY
Sbjct: 48 LIVAHLDHCLRDDSFLESQLLQRLTS--ALKVKLVEKKWPVELHPQAG-VEAKAREYRYA 104
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
KV ++Q LL AHH DD E +L+ R+ V + + QI +
Sbjct: 105 FLAKVGRKYQTDYLLTAHHGDDLIENILLKFIRSGDVAEMNSL----QIVGNLG------ 154
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
S+ L+RPL+ +SKD++ K + + D++ED TN +RNR+R
Sbjct: 155 ----SMKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNFEDDTLRNRLR 198
>gi|121593999|ref|YP_985895.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42]
gi|120606079|gb|ABM41819.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42]
Length = 335
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 94/223 (42%), Gaps = 35/223 (15%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
A+A +P +A+ +SGG DS AL + A + ++A V HGL+
Sbjct: 8 AVAAFRPRLPLAVALSGGADSTALLLACAA-------------RWPGQVVAFHVHHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCI----Q 189
+ +GI + R +D R G E AAR RY+ F+ + + Q
Sbjct: 55 AADGFEQHCVALCERLGIPLWVRR---VDARHAAGQSPEDAARQARYKAFEALALDCQAQ 111
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + +A HADDQ E +L LSR +GV GLA M Q +
Sbjct: 112 AAIKTIALAQHADDQVETLLLALSRGAGVAGLAAMPAQWQ--------------RAGMDW 157
Query: 250 VRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RPLL + D+ WVEDPTN F RNRIR L
Sbjct: 158 CRPLLRVAGADVRAWLVARGERWVEDPTNADERFTRNRIRRQL 200
>gi|422880561|ref|ZP_16927024.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1059]
gi|422929990|ref|ZP_16962930.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 29667]
gi|422930425|ref|ZP_16963356.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK340]
gi|332363617|gb|EGJ41398.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1059]
gi|339613623|gb|EGQ18359.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 29667]
gi|339621210|gb|EGQ25773.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK340]
Length = 425
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 45/275 (16%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L ++ + +D LA
Sbjct: 3 KQEFLKKMQEKKYFQDHRKVLIAVSGGLDSMTLLQLLI-----------DSQKELDIELA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES++E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESEQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
KV + L+ AHHADDQAE +RL R + + L+GM + +++C +
Sbjct: 104 GKVMQEEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGE--- 154
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSF 300
L+RPLL F K D I ED +N ++RNRIR + L DL + F
Sbjct: 155 -----LIRPLLTFHKSDFPDIQH------FEDSSNFQNDYLRNRIRNLYLPDLEKENPQF 203
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
K L+ + ++ + H+ +L + V V Q
Sbjct: 204 KDSLRYLGKEIEDWQTALSHLTRDLDIKNVQVFHQ 238
>gi|258567614|ref|XP_002584551.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905997|gb|EEP80398.1| predicted protein [Uncinocarpus reesii 1704]
Length = 775
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 118/292 (40%), Gaps = 56/292 (19%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+AL VSGGPDSMAL L G+ + + ++A+ VDH R+ S +EA V
Sbjct: 33 RVALAVSGGPDSMALAHLCRKLTVEGYIPDLK-------VIALIVDHKSRKGSADEALRV 85
Query: 144 SHRVSDMGIRCEIVRCDW---LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ + +MG+ EI+ W K + + AR +RY+ C I LL+ HH
Sbjct: 86 AGWIQEMGLTPEILTLKWPAEAKDPSKLSNFETLARKLRYQALGTACTSANIQTLLLGHH 145
Query: 201 ADDQAELFILRLSRNSGVLGLAGM--------------------------AFSSQIFSSY 234
DD E +LRLS+ GLAG +S+ S
Sbjct: 146 RDDNIETGLLRLSQGHRRFGLAGFDCISPIPECHGLWGVSHSGDISSLETILTSRTPESK 205
Query: 235 AYSC----HDDLKNHS-------------ILLVRPLLDFSKDDMYKICQGGNRDWVEDPT 277
A H D+ S + L+RP F K + C+ +V DPT
Sbjct: 206 AKPSNLAEHLDITGVSPQLNIAHFTASGGVYLLRPFRAFPKARLEATCRNAMVPFVVDPT 265
Query: 278 NRS-PLFVRNRIRMSLG--DLSSCSFKSELQAVISACRRTRSYVEHVCSNLI 326
N L VRN +R L DL + A++ +R + ++ + L+
Sbjct: 266 NADHTLTVRNTVRKLLASDDLPRALQSPPILALMDRTQRIKERLQELVDGLV 317
>gi|422849801|ref|ZP_16896477.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK115]
gi|325689365|gb|EGD31371.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK115]
Length = 425
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 123/275 (44%), Gaps = 45/275 (16%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQDHQKVLVAVSGGLDSMTLLQLLID------SQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+KV + L+ AHHADDQAE +RL R + + L+GM + +++C +
Sbjct: 104 EKVMQEEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGE--- 154
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSF 300
L+RPL F K D I ED +N ++RNRIR + L DL + F
Sbjct: 155 -----LIRPLFTFHKSDFPDIQH------FEDSSNFQNDYLRNRIRNLYLPDLEKENPQF 203
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
K L+ + ++ + H+ +L E V V Q
Sbjct: 204 KDSLRYLGKEIEDWQTALSHLTRDLDIENVQVFHQ 238
>gi|71892070|ref|YP_277800.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123641037|sp|Q493B5.1|TILS_BLOPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|71796176|gb|AAZ40927.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 510
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 21/212 (9%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H R+ L SGG DS L + K + + F+ L AI V HG+ S E A+
Sbjct: 24 HTRLVLSYSGGLDSTVLLDILTRLKNNS--DHFTSSPFM--LRAIYVHHGISNYSDEWAS 79
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR-LFQKVCIQHQIGVLLIAHH 200
++ GI ++ + + KQ +++ AR++RY+ L+ ++ + +LL AHH
Sbjct: 80 HCFNQCKIRGIPFSVIHINCYNAENKQRNIEALARNLRYKKLYNRLNSKE---ILLTAHH 136
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+DQ E L L R SG GL+GM+ ++ + Y L+RPLLD S++
Sbjct: 137 MNDQVESLFLALKRGSGPSGLSGMSKNALYANKYR-------------LLRPLLDCSREQ 183
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ W+ED TN F RN +R+ +
Sbjct: 184 LEMYAYKKKLVWIEDDTNTDTRFDRNFLRIKI 215
>gi|418406037|ref|ZP_12979357.1| tRNA-lysidine synthase [Agrobacterium tumefaciens 5A]
gi|358007950|gb|EHK00273.1| tRNA-lysidine synthase [Agrobacterium tumefaciens 5A]
Length = 445
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 138/310 (44%), Gaps = 37/310 (11%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP H I + +SGG DS L + EA L A+TVDH LR ES +E
Sbjct: 28 KPVH-ILIAISGGSDSTGLLLAM-------HEARAEADPDRVRLSAVTVDHALRAESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A+ VS +++GI + R W D +P G + EA+R RY L V +++ H
Sbjct: 80 AHKVSLLCAELGIPHTVRR--WDDPKPASG-ISEASRLARYSLIADVASDIGADLIVTGH 136
Query: 200 HADDQAELFILRLSR--NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
DQ E +R +R +S LGLAGMA + Y H I+ RP L
Sbjct: 137 TLGDQRETVAMRAARSGSSENLGLAGMA------DAVLYGGR-----HWIM--RPFLTCE 183
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 317
+ ++ +R W +DP+N + + R R+R SL D S F ++ A + ++Y
Sbjct: 184 RQEIRDFVLSRSRGWSDDPSNDNARYERVRVRQSLSD-SPPPFDAQ------AAVKRQAY 236
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGST 377
E + + + V V A + +E L P E LA+++ + R S+
Sbjct: 237 SEK-TAFFLQQNVEVFHATLARLSIEGLMPDLPE---FRHGLAVLIANLGGRAYFPAASS 292
Query: 378 SKLLLHYIRT 387
+L +++T
Sbjct: 293 MDRVLQFLKT 302
>gi|223936702|ref|ZP_03628612.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514]
gi|223894553|gb|EEF61004.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514]
Length = 457
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 25/213 (11%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKE-EA 140
RI +GVSGG DSM L + + E D LA+ ++H LR S + +
Sbjct: 26 ERILVGVSGGLDSMVLLEVLS-----------ELASKHDWTLAVAHLNHSLRGRSSDADE 74
Query: 141 NIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+V +G +C + R + GR L+ AAR +R+ + + I V+ +AH
Sbjct: 75 RLVRRTAERLGCQCVVERAEVRKFGRKAGLSLEMAARRLRHEFLARSARKLGIKVVALAH 134
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
HADDQ ELF+LRL R + GLAGM + ++ S + + LVRPLL+ K
Sbjct: 135 HADDQVELFLLRLLRGASSEGLAGMDW--KVASPV---------DKGLGLVRPLLEVRKS 183
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ Q + +D TN S +RNR+R L
Sbjct: 184 ELEGFAQQEGVKFRKDATNESQEILRNRVRHEL 216
>gi|383782975|ref|YP_005467542.1| hypothetical protein AMIS_78060 [Actinoplanes missouriensis 431]
gi|381376208|dbj|BAL93026.1| hypothetical protein AMIS_78060 [Actinoplanes missouriensis 431]
Length = 329
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 77/171 (45%), Gaps = 28/171 (16%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMG---IRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
+TVDHGL+E S A V+ D G +R E V L G P + AAR RY
Sbjct: 60 VTVDHGLQEGSDRRARSVAAWARDAGFDPVRIETVSVAGLPGGP-----EAAARTARYEA 114
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ +L+ H DDQAE +L L+R +G GL+GM +F
Sbjct: 115 LSAAATELGAAAVLLGHTRDDQAETVLLALARGAGPRGLSGMPGRRGVFR---------- 164
Query: 243 KNHSILLVRPLLDFSKDDMYKICQG-GNRDWVEDPTNRSPLFVRNRIRMSL 292
RP+LD ++ D K C G W EDP N P + R+R+R S+
Sbjct: 165 --------RPMLDVARADTRKACAALGLAPW-EDPHNSDPAYARSRVRASV 206
>gi|331268350|ref|YP_004394842.1| cell cycle protein MesJ [Clostridium botulinum BKT015925]
gi|329124900|gb|AEB74845.1| Cell cycle protein MesJ, putative [Clostridium botulinum BKT015925]
Length = 467
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 111/229 (48%), Gaps = 31/229 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ + VSGGPDS +C+L +K E L+A ++H LR EE+ ++
Sbjct: 25 KVVVAVSGGPDS--ICLLHILYKL--------KEELGITLVAAHINHCLRGEEADKDEEY 74
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++ I C + + D +G + A R++RY F +V + + +AH+A
Sbjct: 75 VRKFCENLNIECFVKKEDVHKISKDRGISCEMAGREVRYEFFSEVLNKVGANKIAVAHNA 134
Query: 202 DDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+DQAE ++R+ R +G+ GL G+ A IF +RP++D ++D+
Sbjct: 135 NDQAETILMRMLRGTGLEGLVGIRAVRDNIF------------------LRPIIDITRDE 176
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
+ C N + D TN ++ RN+IR+ L +F S++ V++
Sbjct: 177 IENYCDVNNLNPRIDKTNLENIYTRNKIRLELIPYIQKNFNSDVIEVLN 225
>gi|386042556|ref|YP_005961361.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes 10403S]
gi|404409452|ref|YP_006695040.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC5850]
gi|345535790|gb|AEO05230.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes 10403S]
gi|404229278|emb|CBY50682.1| bifunctional protein TilS/HprT [Listeria monocytogenes SLCC5850]
Length = 648
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 27/216 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W + + + + ++H LRE + +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLWNSDLVPK--------EAISVAHLNHQLRENAAK 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E +V GI I D + R + Q L+E AR +RY F+KV + I L+
Sbjct: 68 EQRVVETFCERQGIPFYIEEVD-IKSRAQSLQKGLEETARIVRYDFFEKVMTEKNINKLV 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ A +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K ++ Q + D +N S + RNR R L
Sbjct: 173 TKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|347528740|ref|YP_004835487.1| tRNA(Ile)-lysidine synthase [Sphingobium sp. SYK-6]
gi|345137421|dbj|BAK67030.1| tRNA(Ile)-lysidine synthase [Sphingobium sp. SYK-6]
Length = 315
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 119/277 (42%), Gaps = 37/277 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L RI + VSGG DSMAL L G A TVDHGLR ++
Sbjct: 21 LATEERIGIAVSGGADSMALLALAYHAWPGRVE-------------AATVDHGLRAAARG 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
EA +V+ GI I+ P +G+LQ AAR RY L ++ + L+ A
Sbjct: 68 EAAMVARWCEGQGIPHVILGPP----PPLEGNLQAAARAARYALLEEWRGARGLAWLMTA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H ADDQ E +LRL R +GV GLA ++ L+RPLL +
Sbjct: 124 HQADDQIETILLRLGRGAGVGGLA------------------SVRARRGTLLRPLLGTRR 165
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYV 318
+ C+ +++DP+N P F R R+R +L + S+ L + A + S +
Sbjct: 166 AALRDFCERAGIPFIDDPSNEDPRFDRVRMRTAL-EGSTLIDPGGLARSVDALAQADSAL 224
Query: 319 EHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 355
+ L E++ + G A + L P + + L
Sbjct: 225 GWMTDTLAAESI-AFEAGSATLRRTDLPPEILRRLLL 260
>gi|296537148|ref|ZP_06899091.1| tRNA(Ile)-lysidine synthetase, partial [Roseomonas cervicalis ATCC
49957]
gi|296262524|gb|EFH09206.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957]
Length = 236
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 97/228 (42%), Gaps = 33/228 (14%)
Query: 70 FSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGW--KTGGFNQNGEAGEFIDGLLAI 126
F+ RMA G A+GVSGGP S+AL +L + GG +LA+
Sbjct: 24 FAARMAPLGPFGDAPGFAVGVSGGPHSLALALLARDFARPLGGR------------VLAL 71
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
DHGLR ES EA ++ GI ++R D P +QE AR R
Sbjct: 72 VADHGLRAESAAEAEWTRRTLAAQGISARVLRLDL----PGGSAVQERARQARLAALLGA 127
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
C + LL+ HA DQAE + R R SG GL+G+A +
Sbjct: 128 CAAEGLPFLLLGQHAGDQAETVLFRALRGSGATGLSGIAPRRAAAEA------------- 174
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 294
+++RPLL + + + DP+N P F R R+R +L D
Sbjct: 175 -VILRPLLATPPIRLEALLAARGLSPLRDPSNADPRFARVRLRQALAD 221
>gi|443926910|gb|ELU45459.1| PP-loop family domain-containing protein [Rhizoctonia solani AG-1
IA]
Length = 572
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 54/249 (21%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+++ +SGGPDS+ L L + L +IT+DHGL+ S++ A
Sbjct: 30 LSVALSGGPDSICLLSLL------------KRASLDVPLRSITIDHGLQPTSRDSALRTR 77
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYR-LFQKVCIQHQIGVLLIAHHAD 202
R +G+ I+ +W G+P G ++EAARD RY+ L++ + + G ++ HHAD
Sbjct: 78 TRSEAIGVPGVILPAEWNRGKPSPGEAVEEAARDARYQALWRGLQLYDGPGTVMFGHHAD 137
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSS-------------QIFSSYAYSCHDDLKNHSILL 249
DQ E I+R+ R +G GL GM Q +S + + H L+ +
Sbjct: 138 DQLETVIMRVLRGTGTYGLGGMRAVRRWGWVGVEDCGLLQTRTSESRADH-ALRGMQTYI 196
Query: 250 VRPLLDFSK-------------------------DDMYKICQGGNRDWVEDPTNRSP-LF 283
RPLL K + + C+ N D+ +D TN P L
Sbjct: 197 SRPLLTIPKVSPPHVIFYHIERFTLLIPTIKRPIERILATCRAYNLDYEQDVTNFMPDLT 256
Query: 284 VRNRIRMSL 292
VRN +R +L
Sbjct: 257 VRNAVRYAL 265
>gi|319940218|ref|ZP_08014571.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV]
gi|319810689|gb|EFW07019.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV]
Length = 425
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 41/263 (15%)
Query: 68 EAFSRRMAMAGLKPHHR-IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F + + G HHR + L +SGG DSM L W + + E I+ LA
Sbjct: 4 QQFFQMLQKKGYFRHHRKVLLAISGGLDSMTLL----DW-LYKYRKKLE----IEIYLA- 53
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
V+HG+REES E + +G+ + G ++ ARD RY F+K+
Sbjct: 54 HVNHGVREESDFEEEKLKKIAKKLGVS---IFTSSFSG----PFSEQKARDFRYAFFKKI 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
++ L+ AHHADDQAE +R+ R S + ++GM Q F++
Sbjct: 107 MLEENCTALVTAHHADDQAETIFMRILRGSRLFHISGMK-EKQKFANGE----------- 154
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSE 303
L+RPLL F K + I ED TN+ ++RNRIR L + + F+
Sbjct: 155 --LIRPLLSFQKSNFPPIFH------FEDWTNQENHYLRNRIRNEYFPLLEQENPQFRKH 206
Query: 304 LQAVISACRRTRSYVEHVCSNLI 326
L + + + + + ++ N++
Sbjct: 207 LIELGTEISQMQDALAYLTKNIV 229
>gi|87118609|ref|ZP_01074508.1| cell cycle protein [Marinomonas sp. MED121]
gi|86166243|gb|EAQ67509.1| cell cycle protein [Marinomonas sp. MED121]
Length = 434
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 99/214 (46%), Gaps = 43/214 (20%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE-----E 139
I LG+SGG DS+AL L EAG + AI + HGL + + E
Sbjct: 27 IYLGLSGGVDSVALLHLLV-----------EAG-LGHRVKAIHIHHGLSQNADAWYRFCE 74
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A ++V+ G + E+ Q H ++EAAR RY +F ++ LL+A
Sbjct: 75 ALCQQYQVAFKGHKVEL---------DTQKHSIEEAARIARYDIFASYLNKN--AYLLLA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HHA DQAE + RL R +G GLAGM ++ + + Y RPLL F K
Sbjct: 124 HHAGDQAETLMFRLLRGTGGKGLAGMPAKRELGAGFLY--------------RPLLSFDK 169
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ + + WVED +N+ F RN IR +
Sbjct: 170 TNLIQYVKQNGLTWVEDESNQDEAFSRNHIRHQI 203
>gi|406890399|gb|EKD36309.1| hypothetical protein ACD_75C01558G0004 [uncultured bacterium]
Length = 500
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 99/227 (43%), Gaps = 32/227 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
RI + VSGG DS+AL L A E LLA+ +DHGLR +E+ E I
Sbjct: 35 RIIVAVSGGSDSLALLYLL------------RAIEIPVQLLAVYIDHGLRPQETPYEQEI 82
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ ++G+ D + H +EAAR +RY +K+ ++ V+ H A
Sbjct: 83 IRKCCQELGVPYLTASVDVHRLIASEKHSPEEAARILRYDALEKLRREYDARVIATGHTA 142
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E F LRL R S GL+GMA L+RPLL +K +
Sbjct: 143 DDQVEEFFLRLIRGSSRRGLSGMAVRRD------------------RLIRPLLHETKHAL 184
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI 308
N W D +N F+RNR+R+ L L F ++ +
Sbjct: 185 ADYLTSQNVGWCLDSSNLERHFLRNRVRLDLLPLLENEFNPAIRRTV 231
>gi|187735920|ref|YP_001878032.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC
BAA-835]
gi|187425972|gb|ACD05251.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC
BAA-835]
Length = 334
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 29/203 (14%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV 147
G+SGG DSMAL L +G G N L+A V+H LR E++EE V
Sbjct: 24 GISGGRDSMALLSLLSGMP--GCN-----------LVACHVNHQLRPEAEEEEMFVLRYA 70
Query: 148 SDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ +GI C R + +G ++EAAR+ R F K + ++ +AHH +DQ E
Sbjct: 71 ASLGIPCVRERVNVRSMAHTRGIAIEEAAREARQASFLKWAAGYPGALVALAHHRNDQQE 130
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
+L L R G G+ GM F S++A + + +VRP+LDFS++D+ +
Sbjct: 131 TALLHLCR--GASGIHGM-FP---VSTWA---------NGLTVVRPMLDFSREDITSYLE 175
Query: 267 GGNRDWVEDPTNRSPLFVRNRIR 289
+ W ED +N+S + RN +R
Sbjct: 176 HRHIPWREDSSNQSAEYTRNALR 198
>gi|347524861|ref|YP_004831609.1| tRNA(Ile)-lysidine synthase [Lactobacillus ruminis ATCC 27782]
gi|345283820|gb|AEN77673.1| tRNA(Ile)-lysidine synthase [Lactobacillus ruminis ATCC 27782]
Length = 450
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 30/222 (13%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-V 128
F G+ + + + VS G DSM L L E + + + V
Sbjct: 11 FQAEWKKMGVPANETVLVAVSTGCDSMTLLSLLQ-----------RLPEKMRPTVQVAYV 59
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVC 187
DH LRE+SK+E + ++ G+ + + W + PK+G ++E+AR+ RYR F+K+
Sbjct: 60 DHQLREQSKKETDFITKYCQKNGLV--LFKNVWEKEFHPKKG-IEESAREFRYRFFEKIM 116
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
+ I LL AHH++DQAE +++ R + L G+ S++ F +
Sbjct: 117 EETGIEYLLTAHHSNDQAETILMKAVRGGDLEQLVGIK-SARTFGTGK------------ 163
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL FSK+ + + + + ED TN +RNR+R
Sbjct: 164 -LLRPLLHFSKETLKEYAERNQIKYFEDETNALDDVLRNRLR 204
>gi|422861102|ref|ZP_16907744.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK330]
gi|327467727|gb|EGF13221.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK330]
Length = 425
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 41/273 (15%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L ++ E L
Sbjct: 3 KQEFLKKMQEKKYFQDHQKVLVAVSGGLDSMTLLQLLVDYQK----------ELAIELAI 52
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK 185
V+H R ES++E + +G++ + AR RY F K
Sbjct: 53 AHVNHKQRPESEQEEKALVKIAEQLGVKIFTSSF-------SGSFSENVARQFRYDFFGK 105
Query: 186 VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH 245
V + L+ AHHADDQAE +RL R + + L+GM + +++C +
Sbjct: 106 VMQEGHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGE----- 154
Query: 246 SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKS 302
L+RPLL F K D I ED +N ++RNRIR + L DL + FK
Sbjct: 155 ---LIRPLLTFHKSDFPDIQH------FEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKD 205
Query: 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
L+ + ++ + H+ +L E V V Q
Sbjct: 206 SLRYLGKEIEDWQTALSHLTRDLDIENVQVFHQ 238
>gi|405979500|ref|ZP_11037843.1| tRNA(Ile)-lysidine synthetase [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391916|gb|EJZ86977.1| tRNA(Ile)-lysidine synthetase [Actinomyces turicensis
ACS-279-V-Col4]
Length = 376
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 87/202 (43%), Gaps = 32/202 (15%)
Query: 79 LKPHHRIALGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
+P + +G+SGG DS+AL C L + G N ++ +TVDHG+R ES
Sbjct: 33 FQPGSAVVIGLSGGADSLALTLCALDCASRLG-LN-----------IVTVTVDHGVRAES 80
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+EA V G +VR D +G + A R+ R + +V + +LL
Sbjct: 81 ADEARAVGDLARSYGADSRVVRVALAD----KGGPEGAGREARREVLARVARSYDAPILL 136
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
H DDQAE +LRL R SG L M D I +RPLL
Sbjct: 137 -GHTLDDQAETVLLRLGRGSGAHSLRAMR-------------QDATDREGIRWIRPLLHL 182
Query: 257 SKDDMYKICQGGNRDWVEDPTN 278
+ D CQ +V+DPTN
Sbjct: 183 RRADTIATCQALAVSFVDDPTN 204
>gi|399544471|ref|YP_006557779.1| tRNA(Ile)-lysidine synthase [Marinobacter sp. BSs20148]
gi|399159803|gb|AFP30366.1| tRNA(Ile)-lysidine synthase [Marinobacter sp. BSs20148]
Length = 460
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 27/214 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L H R+ + SGG DS L L A L A+ ++H L+ + E
Sbjct: 23 LPQHDRLCIAFSGGLDSSLLLHLFAAITPAS-----------TALSALHINHQLQPNAAE 71
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ + + +V G L++AAR RY +F++ ++ LL+A
Sbjct: 72 VDAFCRDVCARLSVPLRVVSVTVPVKAEGVGGLEQAARAARYGVFEQYLRADEL--LLLA 129
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQ E + RL R SGV GLAGM F+ + + L RPLL+FS+
Sbjct: 130 HHGDDQLETVLFRLFRGSGVAGLAGMPFTRALGAG--------------ALARPLLEFSR 175
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + W+EDP+N F RN +R S+
Sbjct: 176 AQLEAWTEDAGLPWIEDPSNSDQRFDRNYLRNSV 209
>gi|323340112|ref|ZP_08080377.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus ruminis ATCC 25644]
gi|323092489|gb|EFZ35096.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus ruminis ATCC 25644]
Length = 450
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 30/222 (13%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-V 128
F G+ + + + VS G DSM L L E + + + V
Sbjct: 11 FQAEWKKMGVPANETVLVAVSTGCDSMTLLSLLQ-----------RLPEKMRPTVQVAYV 59
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVC 187
DH LRE+SK+E + ++ G+ + + W + PK+G ++E+AR+ RYR F+K+
Sbjct: 60 DHQLREQSKKETDFITKYCQKNGLV--LFKNVWEKEFHPKKG-IEESAREFRYRFFEKIM 116
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
+ I LL AHH++DQAE +++ R + L G+ S++ F +
Sbjct: 117 EETGIEYLLTAHHSNDQAETILMKAVRGGDLEQLVGIK-SARTFGTGK------------ 163
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL FSK+ + + + + ED TN +RNR+R
Sbjct: 164 -LLRPLLHFSKETLKEYAERNQIKYFEDETNALDDVLRNRLR 204
>gi|424864772|ref|ZP_18288675.1| tRNA(Ile)-lysidine synthase [SAR86 cluster bacterium SAR86B]
gi|400759518|gb|EJP73700.1| tRNA(Ile)-lysidine synthase [SAR86 cluster bacterium SAR86B]
Length = 318
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 31/207 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I +G+SGG DS+AL + A +K E+ + +I V+H + S
Sbjct: 16 KIYIGLSGGSDSIALLNIVASYKR----------EYNLDVTSIHVNHSTSQNSNMWQEFC 65
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
D+GI C + + K+G + AAR RY++F+ + ++ LL+AHHAD
Sbjct: 66 EQSSKDLGINCIVKKISI----EKKGQGFEAAARGERYKVFKDILSEND--QLLLAHHAD 119
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D AE +LR+ R +G+ GL G + ++RPLL+ SK D+
Sbjct: 120 DVAETLLLRIFRGTGIDGLQGPRRKRSLGKGN--------------IIRPLLEISKKDLM 165
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
N +++ D +N + + RN IR
Sbjct: 166 AYLNDKNIEFINDESNNNSEYDRNYIR 192
>gi|387814779|ref|YP_005430266.1| tRNA(Ile)-lysidine synthetase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381339796|emb|CCG95843.1| tRNA(Ile)-lysidine synthetase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 445
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 19/168 (11%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
A+ ++H L+ + + +G+ ++ R + G G L+E+AR RY +F+
Sbjct: 56 ALHINHQLQSNHDQTERACIDLCAGLGVELQVRRVNVATG---AGSLEESARAARYEVFR 112
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
+V + + LL+AHHADDQAE + RL R +GV GLAGM S + + Y
Sbjct: 113 EVLGDNDL--LLMAHHADDQAETVLFRLLRGTGVNGLAGMPVSRSLGRGHLY-------- 162
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RP L S+ + +I + W EDP+N+S + RN +R S+
Sbjct: 163 ------RPWLGVSRSRLEQIAREQELSWAEDPSNQSEVHDRNYLRHSV 204
>gi|408378753|ref|ZP_11176349.1| hypothetical protein QWE_14192 [Agrobacterium albertimagni AOL15]
gi|407747203|gb|EKF58723.1| hypothetical protein QWE_14192 [Agrobacterium albertimagni AOL15]
Length = 441
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 17/188 (9%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A T+DHGLR E+ +EA V+ ++G+ I R W +P G L AAR+ RYRL
Sbjct: 65 LSAATIDHGLRPEAADEAEQVAILCRELGVPHRIER--WTGEKPTTG-LSAAAREARYRL 121
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS-GVLGLAGMAFSSQIFSSYAYSCHDD 241
+ ++ H DDQ E +R R++ VLGL+GMA ++
Sbjct: 122 LAHAADTYDADAIVTGHTLDDQIETVAMRAGRSADAVLGLSGMAPAT------------- 168
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK 301
L + ++RP L + + + R W++DP+N P + R R R + + + +
Sbjct: 169 LYAGRLWILRPFLHTRRAAIRSSLEASGRAWIDDPSNDDPHYERVRTRRTAPRVDAATID 228
Query: 302 SELQAVIS 309
+ + IS
Sbjct: 229 AAARQRIS 236
>gi|83644690|ref|YP_433125.1| ATPase [Hahella chejuensis KCTC 2396]
gi|83632733|gb|ABC28700.1| predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Hahella chejuensis KCTC 2396]
Length = 445
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 171 LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQI 230
L+ AAR+ RYR+F++ +H VLL HH +DQAE + RL + GV GLAG+ +
Sbjct: 103 LEAAAREARYRVFERYLSEHADAVLLQGHHQNDQAETILFRLLKGHGVKGLAGIPRQRTL 162
Query: 231 FSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM 290
+L RPLLDF++ ++ + Q WVED +N +F RN +R
Sbjct: 163 GKG--------------ILRRPLLDFTRLELEALAQRWGLSWVEDESNVDAVFDRNFLRN 208
Query: 291 SLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAV 339
+ S +++ + + RR S+L++E + QG V
Sbjct: 209 EILRPMSARWRNAVAMIAETGRRMSE-----ASSLLDELAEIDLQGETV 252
>gi|340787522|ref|YP_004752987.1| tRNA(Ile)-lysidine synthetase [Collimonas fungivorans Ter331]
gi|340552789|gb|AEK62164.1| tRNA(Ile)-lysidine synthetase [Collimonas fungivorans Ter331]
Length = 472
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 20/209 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ SGG DS L A + AG L A + HG+ + + +
Sbjct: 34 RLAVAYSGGLDSSVLLHAAAQY----------AGAHGAQLFAFHIHHGISPNADQWQSHC 83
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + +G+ + R L K G ++EAAR RY +C QHQI +LL HH DD
Sbjct: 84 AEACARLGVVFDTRRIA-LRNSDKSG-VEEAARISRYAALGDLCRQHQIPLLLTGHHLDD 141
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE +L+L R SG GL+GM + L + +L+ RPLL S+ + +
Sbjct: 142 QAETVLLQLLRGSGAAGLSGM--------DRWNTAPTLLGDAVLLMARPLLKVSRAALEQ 193
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ED +N P + RN +R +
Sbjct: 194 YAAAQQLTFIEDESNHDPRYARNALRQQV 222
>gi|67515665|ref|XP_657718.1| hypothetical protein AN0114.2 [Aspergillus nidulans FGSC A4]
gi|40746136|gb|EAA65292.1| hypothetical protein AN0114.2 [Aspergillus nidulans FGSC A4]
gi|259489693|tpe|CBF90174.1| TPA: PP-loop family protein (AFU_orthologue; AFUA_5G11880)
[Aspergillus nidulans FGSC A4]
Length = 609
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 33/228 (14%)
Query: 109 GFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQ 168
G + + + ++A VDH R ES +EAN V+ + ++GI EI+ DW
Sbjct: 28 GLTNSNTSSKDEPSVIAFVVDHKARPESTDEANTVATWLRELGITTEILPLDWTGI--DH 85
Query: 169 GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS 228
+ AR +R++ K C I LL+ HH DD E + RLS + GL G++ +
Sbjct: 86 SAFETQARRLRFQALGKACRDRGIDALLLGHHQDDNVETTLWRLSAGARGAGLTGISPVA 145
Query: 229 QI-------------FSSYAYSCHDDLKNH--------------SILLVRPLLDFSKDDM 261
+I + +A D K+ I++ RPLL F K +
Sbjct: 146 RIPECHGLYGVAASGSAVFARDYWQDQKHEIEQTRRGELPVSTGGIIIHRPLLSFPKSRL 205
Query: 262 YKICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDLSSCSFKSELQAVI 308
C +V DPTN P L RN IR SL L+S S + Q ++
Sbjct: 206 LTTCHENGIPYVTDPTNFDPTLTPRNAIR-SL--LASNSLPRKCQGLV 250
>gi|302690392|ref|XP_003034875.1| hypothetical protein SCHCODRAFT_29811 [Schizophyllum commune H4-8]
gi|300108571|gb|EFI99972.1| hypothetical protein SCHCODRAFT_29811, partial [Schizophyllum
commune H4-8]
Length = 392
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 97/213 (45%), Gaps = 20/213 (9%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGGPDS L L W +L+ +VDH L+ S + + + +
Sbjct: 22 SGGPDSTCLLFLLHRWARSLPESQSHR------ILSWSVDHNLQPSSAQWMSHTARFAAR 75
Query: 150 MGIRCEIVRCDWLDG--RPK-----QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ IR + W DG PK +G L+ AAR++RY L V HHAD
Sbjct: 76 LNIRHLSAQIAWGDGGFPPKPTSGGKGKLELAAREVRYALLYDALRSAGAEVAAFGHHAD 135
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS--CHDDLKNHSILLVRPLLDFSKDD 260
DQ E ILR + S LGLAGM S + F A H+ L+ +VRPLL SKD
Sbjct: 136 DQVETAILRALKGSSELGLAGMK-SCRRFGMGARGELGHEGLRK---WIVRPLLPVSKDR 191
Query: 261 MYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSL 292
+ C ++V D TN P L +RN IR ++
Sbjct: 192 ILATCDEHKLEYVVDSTNFQPELTLRNAIRNAV 224
>gi|108796755|ref|YP_636527.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum]
gi|122211731|sp|Q32RJ9.1|TILS_ZYGCR RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|61393739|gb|AAX45881.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum]
Length = 420
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 136/325 (41%), Gaps = 64/325 (19%)
Query: 79 LKPHHRIALGVSGGPDSMALCVL------TAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
L P+ RI + VSGG DS+ L + T WK G + DH
Sbjct: 52 LHPYQRILIAVSGGQDSICLLNILNKLRSTWHWKLG----------------IVHCDHKW 95
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQ 191
+S +A VS ++M I D Q + ++ AR+ RY L + V I H
Sbjct: 96 YLDSALQAIHVSRLAANMQI-------DLYQALTTQSVNNEQLARNWRYELIRHVAICHN 148
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYA------------YSCH 239
V++ H A D+ E I L R SG+ GL +++ ++ S YS H
Sbjct: 149 FSVIVTGHTASDRVETLIYNLIRGSGISGLQSISWKRKLNSMLTIRMRSVEEQIILYSKH 208
Query: 240 -----------DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRI 288
+D KN I L+RPLL+ S+ ++ + Q D +N++ RNRI
Sbjct: 209 VKCYQNRENLLEDKKNVDIYLIRPLLNVSRMELKHLVQNWKLSIWSDCSNQNISICRNRI 268
Query: 289 RMSLGDLSSCSFKSELQAVISACRRTRS----YVEHVCSNLINEAVTVM-----DQGYAV 339
R L F ++ V+++C Y++ + ++++A++ + DQ
Sbjct: 269 RHQLLPYLRQYFHPKIDYVLNSCTEVMYTETLYLDSIARYVLSKALSFISMPLNDQTCVK 328
Query: 340 IDLEILN--PSKIEDIFLSKFLALV 362
+D E+L P I+ L FL ++
Sbjct: 329 LDFELLRAVPLAIQRRILKYFLDVI 353
>gi|417974655|ref|ZP_12615462.1| tRNA(Ile)-lysidine synthase [Lactobacillus ruminis ATCC 25644]
gi|346328999|gb|EGX97311.1| tRNA(Ile)-lysidine synthase [Lactobacillus ruminis ATCC 25644]
Length = 448
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 30/222 (13%)
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-V 128
F G+ + + + VS G DSM L L E + + + V
Sbjct: 9 FQAEWKKMGVPANETVLVAVSTGCDSMTLLSLLQ-----------RLPEKMRPTVQVAYV 57
Query: 129 DHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVC 187
DH LRE+SK+E + ++ G+ + + W + PK+G ++E+AR+ RYR F+K+
Sbjct: 58 DHQLREQSKKETDFITKYCQKNGLV--LFKNVWEKEFHPKKG-IEESAREFRYRFFEKIM 114
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
+ I LL AHH++DQAE +++ R + L G+ S++ F +
Sbjct: 115 EETGIEYLLTAHHSNDQAETILMKAVRGGDLEQLVGIK-SARTFGTGK------------ 161
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL FSK+ + + + + ED TN +RNR+R
Sbjct: 162 -LLRPLLHFSKETLKEYAERNQIKYFEDETNALDDVLRNRLR 202
>gi|254564206|ref|YP_003071301.1| tRNA(Ile)-lysidine synthase [Methylobacterium extorquens DM4]
gi|254271484|emb|CAX27499.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase,
tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein
[Methylobacterium extorquens DM4]
Length = 342
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 89/200 (44%), Gaps = 31/200 (15%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P L VSGGPDS AL + AG D TVDH LR S +E
Sbjct: 22 EPARPALLAVSGGPDSTAL-----------MHAAARAGR--DRFRVATVDHALRPGSADE 68
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
A V +++G+ I+ D P+ G +Q +AR RY+L + G++L A
Sbjct: 69 ALGVGRLAAELGLVHTILTWDA----PRHGSRIQASARGARYKLLTDHAGRIGTGLILTA 124
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H DDQAE ++RL SG GLAGM + I LVRP L SK
Sbjct: 125 HTLDDQAETVLMRLIAGSGPSGLAGMRDERPLAP-------------GIRLVRPFLSLSK 171
Query: 259 DDMYKICQGGNRDWVEDPTN 278
D+ C+ ++ DP+N
Sbjct: 172 ADLVAYCEMHRLPFLRDPSN 191
>gi|269792457|ref|YP_003317361.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100092|gb|ACZ19079.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 469
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 31/209 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGG DS+AL +L + GE + G VDHG+RE S +A+ V
Sbjct: 32 KMVVAVSGGGDSVALALLL---------KRFWPGEQVWG----HVDHGIRETSGRDADFV 78
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
S GIRC + R R K ++ AAR +R+ + + + G + AH DD
Sbjct: 79 SALAESWGIRCHVGRFHVPTDRIKGESMEMAARRVRHAFLEDLASRLGAGFIATAHTVDD 138
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE +L L R +G+ GLAG + VRP++ + ++ +
Sbjct: 139 QAETVMLNLLRGTGLWGLAG------------------IPQRRGPWVRPVIAMRRWELRR 180
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + WVED TN + RN++R+ L
Sbjct: 181 YLEESSVSWVEDETNLCCDYRRNQVRLEL 209
>gi|302038048|ref|YP_003798370.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii]
gi|300606112|emb|CBK42445.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii]
Length = 461
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 31/209 (14%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSH 145
+ VSGGPDS+AL + +Q A + L + ++GLR ES +A+ V+
Sbjct: 1 MAVSGGPDSVALLSI--------LHQLAPAWNLL--LTVVHCNYGLRGAESDGDASFVAA 50
Query: 146 RVSDMGIRCEIVRCDWLD--GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + C I R +D G + LQ AR+ RYRLF+ V ++ + + H ADD
Sbjct: 51 LCRRLELPCHIRRLT-VDRRGTGESSSLQARAREARYRLFRDVVVELGADRVALGHTADD 109
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE +LR+ R +G+ GLAGM I S L VRPLL S+ ++
Sbjct: 110 QAETVLLRMLRGTGLRGLAGM---PHIRES--------------LFVRPLLSRSRQEILA 152
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q + D +N +++RNR+R L
Sbjct: 153 YLQAVGLSYRTDSSNAKSIYLRNRVRHEL 181
>gi|393216736|gb|EJD02226.1| hypothetical protein FOMMEDRAFT_141347, partial [Fomitiporia
mediterranea MF3/22]
Length = 510
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 31/293 (10%)
Query: 40 QYLPSIRLFCK---CSHAHAVEYLTDMTK--YREAFSRRMA--MAGLKPHHRIALGVSGG 92
+Y S L+C HA + + ++ K + F R + M IA+ SGG
Sbjct: 10 RYKSSATLYCSLEITRRFHASQCVCEVAKPISHDEFKRHLQQCMPTQSQGENIAVAFSGG 69
Query: 93 PDSMALCVLTAGWKTGGFNQNGEAGEFIDG-LLAITVDHGLREESKEEANIVSHRVSDMG 151
PDS C+L + N G+ +A+T+DH L+ S + + + + +
Sbjct: 70 PDST--CLL---YHLKHLTDNNVFGDHKQTEAVAVTIDHRLQAASSQMSEKCASIAASLK 124
Query: 152 IRCEIVRCDW----LDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
++ + + W P G + AR+ RY I + HHADDQ E
Sbjct: 125 VKHLVYKIPWGVAPFPSIPSSGAPFENIAREARYHQLLSAMRNEAISTIAFGHHADDQVE 184
Query: 207 LFILRLSRNSGVLGLA--------GMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
+LR++R S +GLA GM F + + ++ D + S ++RPLL F K
Sbjct: 185 TALLRIARGSTEVGLAGMRPRRLWGMGFGTGP-ENLGWAGQDGM---SRWIIRPLLGFPK 240
Query: 259 DDMYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSLGDLSSCSFKSELQAVISA 310
+ + CQ ++V D TN P + +RN++R LG S + ++++ I+A
Sbjct: 241 ERLIATCQSAGLEYVVDKTNFQPDVALRNQVRRELGSPGSLAERTKVLLDIAA 293
>gi|410582356|ref|ZP_11319462.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM
13965]
gi|410505176|gb|EKP94685.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM
13965]
Length = 632
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 102/247 (41%), Gaps = 56/247 (22%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID------G 122
A RR+ AG R+ + VSGG DSM L + +D G
Sbjct: 27 AGRRRLLEAG----QRVLVAVSGGRDSMVLL------------------DVLDRLRPVLG 64
Query: 123 LLAITV---DHGLREESKEEANIVSHRVSDMGIR--CEIVRCDWLDGRPKQGHLQEAARD 177
L A+ V DHGLR +S +A V + + G+ C V RP + L+E AR
Sbjct: 65 LAALGVAHVDHGLRPDSAGDARWVEEQAAARGLPFLCRRVHI-----RPGRRSLEEGARL 119
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RYR + Q + +AHHA DQAE ++RL +GV GLAGM + F
Sbjct: 120 ARYRALAAMARQFGAQRVALAHHAGDQAETVLMRLLAGAGVRGLAGMPWRRGPF------ 173
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
VRPLL + W +DP+N+ F+RNRIR L L
Sbjct: 174 ------------VRPLLATEPALLAAYAAARGLGWRDDPSNQDLTFLRNRIRHRLLPLLE 221
Query: 298 CSFKSEL 304
F +
Sbjct: 222 AEFNPRV 228
>gi|422822803|ref|ZP_16870992.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK405]
gi|422825234|ref|ZP_16873413.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK678]
gi|422856232|ref|ZP_16902889.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1]
gi|422857314|ref|ZP_16903964.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1057]
gi|422863864|ref|ZP_16910494.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK408]
gi|324991855|gb|EGC23778.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK405]
gi|324996255|gb|EGC28165.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK678]
gi|327458479|gb|EGF04829.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1]
gi|327463845|gb|EGF10161.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1057]
gi|327471619|gb|EGF17062.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK408]
Length = 425
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 123/275 (44%), Gaps = 45/275 (16%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQDHRKVLIAVSGGLDSMTLLQLLI------VSQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
KV + L+ AHHADDQAE +RL R + + L+GM + ++C +
Sbjct: 104 GKVMQEGHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQPFACGE--- 154
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSF 300
L+RPLL F K D I + ED +N ++RNRIR + L DL + F
Sbjct: 155 -----LIRPLLTFHKSDFPDI------QYFEDSSNFQNDYLRNRIRNLYLPDLEKENPQF 203
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
K L+ + ++ + H+ +L E V V Q
Sbjct: 204 KDSLRYLGKEIEDWQTALSHLTRDLDIENVQVFHQ 238
>gi|403238500|ref|ZP_10917086.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. 10403023]
Length = 461
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 95/207 (45%), Gaps = 28/207 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS+AL F+Q E+ L+A VDH R +ES+E+ V
Sbjct: 21 IIVGVSGGPDSLALLHYL-------FHQQKEST-----LIAAHVDHMFRGKESEEDLLYV 68
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
I E ++ D + + Q AAR++RY F V +++ L + HH D
Sbjct: 69 REFCESYQIPFESIQVDVTSYKKEHSISSQVAAREVRYDFFADVMRKYKAEYLALGHHGD 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++RL R S +G AGM +SC ++RP L +K D+
Sbjct: 129 DQIETILMRLVRGSKGIGYAGMQVKR------PFSCGS--------IIRPFLAVTKADIE 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
K C + DP+N + RNR R
Sbjct: 175 KYCLELSLVPKRDPSNDRDDYTRNRFR 201
>gi|341038774|gb|EGS23766.1| hypothetical protein CTHT_0004680 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 886
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGG--FNQNGEAGEFIDGLLAITVDHGLREESKEE 139
H IAL VSGG DSMAL L + + F A + AI +DHGLRE S E
Sbjct: 39 HRPIALAVSGGVDSMALAYLCSKIRPTDCWFKV---ADHPVSSPYAIIIDHGLREGSDVE 95
Query: 140 ANIVSHRVSD-MGIRCEIVRCDWLDGRPKQG-------HLQEAARDMRYRLFQKVCIQHQ 191
A+ VS + + + I+ +++ W P +G +++ AR +RYR +C
Sbjct: 96 ASNVSRLLMEKLKIKSSVIKLRWDPFLPYKGANPNELPNIETLARYLRYRAIGNMCRTQH 155
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS-------CHDDLKN 244
I L AHH DDQ E ++R+ G GL GM S+ I Y D +
Sbjct: 156 ISSLFTAHHQDDQYETVLMRVLSGHGYRGLQGMRPSTDIPECYDLHGVYRSGLVDDQRRR 215
Query: 245 HSILLVRP 252
H ++RP
Sbjct: 216 HPFYVLRP 223
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIR 289
+ +N +++ RPLL FSKD + C + W ED TN P L +RN +R
Sbjct: 283 EFENGGVMVYRPLLGFSKDRLIATCLENDIPWFEDHTNADPTLTMRNAVR 332
>gi|315122874|ref|YP_004063363.1| hypothetical protein CKC_05650 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496276|gb|ADR52875.1| hypothetical protein CKC_05650 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 448
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 125/284 (44%), Gaps = 35/284 (12%)
Query: 81 PHHRIALGVSGGPDSMALCV-LTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
P H I + VSGG DS+ L + L + F + AI+VDHG+R+E+K+E
Sbjct: 19 PAH-ILVAVSGGSDSIGLLIALHSILSDNSFRAIK--------ISAISVDHGIRDEAKDE 69
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V S +GI +V W D +PK G L AAR RY L ++ +++ AH
Sbjct: 70 VKYVFDICSRLGIPHAVVV--WKDQKPKTG-LMAAARKARYALIVDYAMKIGATLVVTAH 126
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
DDQ E +R R+ +GL+G+ + L + + + RP L
Sbjct: 127 TFDDQLETVYMRSQRDYAEKGMGLSGIPETV-------------LYDMRLWIARPFLCCR 173
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSY 317
++D+ N W EDP+N F R R+R + D+ ++ I R R
Sbjct: 174 REDIRSFLLQRNIGWCEDPSNADDRFERVRVRRLIQDIDP----HKMYRKIEKFRNLRIA 229
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLAL 361
V + + LI + + V Q + +LN I+ I LS L +
Sbjct: 230 VNNNVATLIPQYLKVHCQSVIALSENVLN---IDLILLSYLLKV 270
>gi|87307758|ref|ZP_01089901.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645]
gi|87289372|gb|EAQ81263.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645]
Length = 328
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 114/260 (43%), Gaps = 35/260 (13%)
Query: 77 AGLKPHH----RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
A PH + + VSGG DS+AL A + G + L+A+ VDH L
Sbjct: 10 ANWPPHSWSDCTVMVAVSGGADSVALLRSLAAIRESGPGR----------LIAVHVDHNL 59
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQI 192
R+ES +A V+ +GI + R D+ P ++ AAR RY + + H
Sbjct: 60 RKESDTDAQFVAQLAQQLGIEGILGRVDFELSGPDG--IEAAARSARYGFLRTFAMDHGA 117
Query: 193 GVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRP 252
++ AH ADDQ E + R+ R + + GL+G+ + ++ I L+RP
Sbjct: 118 RYVVTAHTADDQIETVLHRILRGTSLAGLSGIPRAREL-------------ELGISLLRP 164
Query: 253 LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF-----KSELQAV 307
+L + ++ + + D TN F RNR+R L L ++ +S L+
Sbjct: 165 MLSIRRSEVEAYLADLGQTFRHDETNDESRFFRNRLRNDLLPLLRDAYLPQVDQSLLRLA 224
Query: 308 ISACRRTRSYVEHVCSNLIN 327
I A R YVE S L++
Sbjct: 225 IGAA-ECREYVETQASQLLD 243
>gi|227528911|ref|ZP_03958960.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540]
gi|227351185|gb|EEJ41476.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540]
Length = 462
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 94/207 (45%), Gaps = 28/207 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VS G DSM L L Q ++ V+H LR++S+EE +
Sbjct: 22 RVVVAVSTGVDSMVLLALLQELPASLRPQ----------IIVAHVNHRLRKQSEEEEQFI 71
Query: 144 SHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
D R ++V W L P+ G ++EAAR MRY F +V Q +LL AHH +
Sbjct: 72 RDYCEDH--RLKLVVHHWPLTEHPQNG-IEEAARKMRYCFFAQVMKDEQATILLTAHHQN 128
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D AE +++L+R + L G+ + F+S L RPLL+F K +
Sbjct: 129 DLAETMLMKLTRGGQLHQLIGIE-EKRPFASGT-------------LERPLLNFPKQRLR 174
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ + W ED TNR RNR R
Sbjct: 175 EYAVNNHLKWYEDLTNRELTVSRNRFR 201
>gi|213963862|ref|ZP_03392110.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno]
gi|213953542|gb|EEB64876.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno]
Length = 415
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 34/211 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
+I + +SGG DS+ L L T LL + LR EES +
Sbjct: 11 KILVAISGGIDSVVLTHLLHFHGTE--------------LLLAHCNFQLRGEESDGDEAF 56
Query: 143 VSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + +GI E+ R D + + Q + Q AAR++RY F ++ H L AHHA
Sbjct: 57 VRNFAKTLGIPLEVKRFDTKEYAKAHQLNTQLAARELRYEWFYELLETHHCDALATAHHA 116
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+D E F++ LSR SG+ GL G+ + +VRPLL +S+ +
Sbjct: 117 NDNLETFLINLSRGSGLDGLLGIP------------------QQTDKIVRPLLQWSRQQI 158
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Y + W ED +N S +VRN IR +
Sbjct: 159 YDYAEAHELQWREDSSNASNKYVRNVIRHEI 189
>gi|323350840|ref|ZP_08086499.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66]
gi|422847891|ref|ZP_16894574.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK72]
gi|322123014|gb|EFX94717.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66]
gi|325686488|gb|EGD28517.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK72]
Length = 425
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 117/262 (44%), Gaps = 44/262 (16%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESK 137
+ H ++ + VSGG DSM L L +Q A E LAI V+H R ES
Sbjct: 16 FQDHRKVLVAVSGGLDSMTLLQLLVD------SQKELAIE-----LAIAHVNHKQRPESD 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIGVLL 196
+E + +G++ I + G+ E AAR RY F KV + L+
Sbjct: 65 QEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFFGKVMQEGHYTALV 116
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AHHADDQAE +RL R + + L+GM + ++C + L+RPLL F
Sbjct: 117 TAHHADDQAETVFMRLLRGARLRHLSGMK------AVQPFACGE--------LIRPLLTF 162
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRR 313
K D I + ED +N ++RNRIR + L DL + FK L+ +
Sbjct: 163 HKSDFPDI------QYFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIED 216
Query: 314 TRSYVEHVCSNLINEAVTVMDQ 335
++ + H+ +L E V V Q
Sbjct: 217 WQTALSHLTRDLDIENVQVFHQ 238
>gi|399003085|ref|ZP_10705756.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. GM18]
gi|398123489|gb|EJM13038.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. GM18]
Length = 445
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 102/242 (42%), Gaps = 26/242 (10%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ V HGL+ + +G+ E+VR G L+ AARD
Sbjct: 52 ESLPALTAVHVHHGLQVAADAWPEHCQSVCDALGVPLEVVRVQVEPG----ASLERAARD 107
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY F + H VLL H DDQAE + RL R +GV GL+GM + +
Sbjct: 108 ARYGAF--IAATHAGEVLLTGQHRDDQAETLLFRLMRGAGVRGLSGMPSERPLGRGH--- 162
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
L+RPLLD ++ ++ W+EDP+N+ F RN +R + + +
Sbjct: 163 -----------LLRPLLDVTRAELEAYAAEHQLSWIEDPSNQDRQFSRNYLRHQVFPVLT 211
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTV-MDQGYAVIDLEILNPSKIEDIFLS 356
+ QAV + R E L++E + + Q V D + L +E L
Sbjct: 212 ARWP---QAVATMARSAAHLSE--AQGLLDELAQIDLAQAGTVSDFDWLGLPSLELAPLE 266
Query: 357 KF 358
K
Sbjct: 267 KL 268
>gi|422822792|ref|ZP_16870985.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK353]
gi|324989589|gb|EGC21535.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK353]
Length = 425
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 117/262 (44%), Gaps = 44/262 (16%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESK 137
+ H ++ + VSGG DSM L L +Q A E LAI V+H R ES
Sbjct: 16 FQDHRKVLVAVSGGLDSMTLLQLLVD------SQKELAIE-----LAIAHVNHKQRPESD 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIGVLL 196
+E + +G++ I + G+ E AAR RY F KV + L+
Sbjct: 65 QEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFFGKVMQEGHYTALV 116
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AHHADDQAE +RL R + + L+GM + ++C + L+RPLL F
Sbjct: 117 TAHHADDQAETVFMRLLRGARLRHLSGMK------AVQPFACGE--------LIRPLLTF 162
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFKSELQAVISACRR 313
K D I + ED +N ++RNRIR + L DL + FK L+ +
Sbjct: 163 HKSDFPDI------QYFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFKDSLRYLGKEIED 216
Query: 314 TRSYVEHVCSNLINEAVTVMDQ 335
++ + H+ +L E V V Q
Sbjct: 217 WQTALSHLTRDLDIENVQVFHQ 238
>gi|401681783|ref|ZP_10813679.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. AS14]
gi|400185788|gb|EJO20013.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. AS14]
Length = 425
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 123/275 (44%), Gaps = 45/275 (16%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H +I + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQGHRKILVAVSGGLDSMTLLQLLID------SQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+KV L+ AHHADDQAE +RL R + + L+GM + +++C +
Sbjct: 104 EKVMQAEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGE--- 154
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSF 300
L+RPLL F K D I ED +N ++RNRIR + L DL + F
Sbjct: 155 -----LIRPLLTFHKSDFPDIQH------FEDSSNFQNDYLRNRIRNLYLPDLEKENPQF 203
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
K L+ + ++ + H+ +L E V +Q
Sbjct: 204 KDSLRYLGKEIEDWQTALSHLTRDLDIENVQAFNQ 238
>gi|32474937|ref|NP_867931.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1]
gi|61216595|sp|Q7UNE1.1|TILS_RHOBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|32445477|emb|CAD75478.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1]
Length = 397
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 20/231 (8%)
Query: 87 LGVSGGPDSMAL-CVLTAGW--KTGGFNQNGEA-GEFIDGLLAITVDHGLR-EESKEEAN 141
+G SGG DS+AL C+L W ++ G N E + + L+ +HGLR EES +
Sbjct: 41 VGCSGGADSVALICLLAELWAEESNGLNPANETVTKPVAPLVVAHCNHGLRGEESNADEA 100
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + + I L+ G + + R +R F++ QH + +AH
Sbjct: 101 FVRQICDQLQLPLVIHHVPPLNNSATSGPVSDERTLRQIRRDFFERAAKQHGCRYVAVAH 160
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
ADDQAE + R +G LGLAG+A +S++ + I++ RPLL +D
Sbjct: 161 SADDQAETMLHHFIRGTGPLGLAGIAEASEL-------------DTDIVVRRPLLQVRRD 207
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA 310
+ + + W ED +NR ++ RN IR + L + + ++A+ A
Sbjct: 208 TLRDGLREIGQPWREDASNRHTIYTRNWIRHDVLPLIESRYPNAVEAIHRA 258
>gi|15891237|ref|NP_356909.1| hypothetical protein Atu3711 [Agrobacterium fabrum str. C58]
gi|61216678|sp|Q8U9L7.1|TILS_AGRT5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|15159602|gb|AAK89694.1| Conserved Hypothetical Protein [Agrobacterium fabrum str. C58]
Length = 443
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 31/217 (14%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL--AITVDHGLREESK 137
KP H I + +SGG DS L + Q +A + DGL A+TVDH LR ES
Sbjct: 28 KPTH-ILVAISGGSDSTGLLLAL---------QEAKAAD-DDGLRLSAVTVDHALRPESA 76
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+EA V+ +++GI R W +P G L EA+R RYRL V + +++
Sbjct: 77 DEARKVAMLCAELGIPHTTRR--WDGPKPASG-LSEASRLARYRLIADVAREIGADLVVS 133
Query: 198 AHHADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
H DQ E +R +R+ G LGL+GMA + Y H + ++RP L
Sbjct: 134 GHTIGDQRETVAMRAARSGGSDNLGLSGMA------DAVLYDAH-------LWIMRPFLA 180
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + +R W++DP+N + + R R+R +L
Sbjct: 181 CERQVIRDYVSSRSRHWLDDPSNENIRYERVRVRQTL 217
>gi|260943125|ref|XP_002615861.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720]
gi|238851151|gb|EEQ40615.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720]
Length = 463
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI---TVDHGLREESKEEA 140
++ + +SGG DSM L L +K + D L I T+DHG R+ S EA
Sbjct: 22 KLLVALSGGVDSMCLTHLLLQYK-----------KLYDPKLEIHTMTIDHGYRKMSSLEA 70
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ V V G I R + + +E AR MRY F++ C + I LL+AH+
Sbjct: 71 HEVGRIVQSWGAHHYIHRLSYDRNPSSITNFEEVARTMRYNAFERQCDELGIQALLLAHN 130
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+D+ E F+ RL NS + GL G+ + + S I + RPLL F K
Sbjct: 131 LNDRIETFLQRLQMNSTLYGLGGLKPRATMPISSK-------SPQQISVFRPLLQFDKQS 183
Query: 261 MYKICQGGNRDWVEDPTN 278
+ + C W ED TN
Sbjct: 184 LRETCVKSGVLWFEDHTN 201
>gi|254825867|ref|ZP_05230868.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
J1-194]
gi|255521743|ref|ZP_05388980.1| hypothetical protein LmonocFSL_11047 [Listeria monocytogenes FSL
J1-175]
gi|293595106|gb|EFG02867.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
J1-194]
Length = 648
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 27/216 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
++ ++ + VSGGPDS+AL L W N N E I ++H LRE +
Sbjct: 18 IRSDDKLLVAVSGGPDSLAL--LHFLW-----NSNLVPKEAIS---VAHINHHLRENAAN 67
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
N+V GI I D + R + Q ++E AR +RY F+KV + +I L
Sbjct: 68 GQNVVEAFCESQGIPFYIEEVD-VKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLA 126
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+AHHADDQ E ++RL R S +G +G+ ++ A +RP L
Sbjct: 127 LAHHADDQIETILMRLVRGSASIGWSGIQPKRELKGGQA--------------IRPFLPI 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+K ++ Q + D +N S + RNR R L
Sbjct: 173 TKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQL 208
>gi|355683141|ref|ZP_09062817.1| hypothetical protein HMPREF9469_05854 [Clostridium citroniae
WAL-17108]
gi|354810623|gb|EHE95263.1| hypothetical protein HMPREF9469_05854 [Clostridium citroniae
WAL-17108]
Length = 456
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L P R+ VSGG DS+ L L G K E+ L A+ V HGLR +E+
Sbjct: 18 LSPGDRVIAAVSGGADSVCLLALLYGMKE----------EWDLQLRAVHVHHGLRGQEAD 67
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIG--- 193
+A+ V +++ + C I++ D G +EA R +RY ++ + + G
Sbjct: 68 RDADFVRTLCAELDVPCHIIKVDVRRFASGSGMSEEEAGRHLRYEALEQEAQEWESGDKG 127
Query: 194 --VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVR 251
+ +AHH+DDQAE + + R SG+ GL G+ ++R
Sbjct: 128 RARIAVAHHSDDQAETILHNMFRGSGLAGLKGIPHVRG------------------RIIR 169
Query: 252 PLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
PLLD + ++ + WV+D TN S + RNRIR
Sbjct: 170 PLLDADRREIIDWLRKNGFSWVQDSTNTSDHYTRNRIR 207
>gi|268318837|ref|YP_003292493.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785]
gi|262397212|emb|CAX66226.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785]
Length = 431
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
MTK+ F+ K + L SGGPDS+AL + + Q
Sbjct: 1 MTKFTTFFTENNIEIKNK---KFLLAASGGPDSVALLKMLVNFLPNPSEQ---------- 47
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYR 181
L+ +DH LR++S E+ ++ S ++ ++V W ++ P+ G ++ AR+ RY
Sbjct: 48 LIVAHLDHCLRDDSFLESQLLQRLTS--ALKVKLVEKKWPVELHPQAG-VEAKAREYRYA 104
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
+V ++Q LL AHH DD E +L+ R+ V + + QI +
Sbjct: 105 FLAEVGRKYQTDYLLTAHHGDDLIENILLKFIRSGDVAEMNSL----QIVGNLG------ 154
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
S+ L+RPL+ +SKD++ K + + D++ED TN +RNR+R
Sbjct: 155 ----SMKLLRPLVKYSKDELLKYDEDHHLDFIEDKTNFEDDTLRNRLR 198
>gi|397169763|ref|ZP_10493193.1| tRNA(Ile)-lysidine synthase [Alishewanella aestuarii B11]
gi|396088658|gb|EJI86238.1| tRNA(Ile)-lysidine synthase [Alishewanella aestuarii B11]
Length = 434
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A+ + HG+ + A + +G+ ++ L GR L++ ARD RY++
Sbjct: 51 LTAVHIHHGISRHADAWAEFCQQQCQKLGVNFKLHWVQ-LQGR---SALEQQARDARYQV 106
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ + L+ AHHA+DQ E +L L R +G+ G+AGMA S
Sbjct: 107 LTDY-VTARDSALVTAHHANDQLETLLLALKRGAGLAGMAGMAESRPFGKG--------- 156
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
LL+RP L+FS+ + + + WVED +N+S F RN +R+ +
Sbjct: 157 -----LLLRPWLNFSRQQLEHVARALQLSWVEDESNQSAEFDRNFLRLEV----IPKLSE 207
Query: 303 ELQAVISACRRTRSYVEHV--CSNLINEAVTVMDQGYAVIDLE--ILNPSKIEDIFLSKF 358
A+I+ RT +++ ++ E +DL+ L P+ +D+ L K+
Sbjct: 208 RWPALITTSARTSRHLQQALELADYYTERALADCATPDYLDLQQLALQPALQQDLLLRKW 267
Query: 359 LA 360
LA
Sbjct: 268 LA 269
>gi|406673302|ref|ZP_11080525.1| tRNA(Ile)-lysidine synthetase [Bergeyella zoohelcum CCUG 30536]
gi|405586488|gb|EKB60248.1| tRNA(Ile)-lysidine synthetase [Bergeyella zoohelcum CCUG 30536]
Length = 431
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 129/303 (42%), Gaps = 65/303 (21%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSH 145
L +SGG DSM L L K + +++ LR E S + +V+
Sbjct: 27 LAISGGVDSMVLLQLCIQLKIH--------------IEVAHINYHLRAENSDADEALVTK 72
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+ I I D+ + K ++Q AR++RY F K+ + +I ++ AHH +DQ
Sbjct: 73 ICAQNHISIHIYHADF--KQSKNKNIQTWAREIRYDFFHKIRKERKIDYIMTAHHLNDQL 130
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E F + L R +G+ GL G+ N ++RPLL+FSK ++Y
Sbjct: 131 ETFFIHLMRGTGIRGLCGIP------------------NAENKIIRPLLNFSKKEIYDFA 172
Query: 266 QGGNRDWVEDPTNRSPLFVRN-------------------RIRMSLGDLSSCSFKSELQA 306
+ ED +N ++ RN R +LG L + + ++
Sbjct: 173 LQNAIPFREDESNTKNIYQRNFLRNEIIPQLEKIQPMFLDNFRQTLGHLQAT--QKAMKT 230
Query: 307 VISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNP------SKIEDIFLSKFLA 360
+I R T S ++ +L +A+ MD A+I EIL P ++IE IF ++ A
Sbjct: 231 LIEEKRNTISQEKNEQISLDKDALQKMD---ALIQYEILKPFGMQNNTEIEKIFHAETGA 287
Query: 361 LVL 363
+ +
Sbjct: 288 IFM 290
>gi|120553850|ref|YP_958201.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8]
gi|120323699|gb|ABM18014.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8]
Length = 445
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 19/168 (11%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
A+ ++H L+ + + +G+ ++ R + G G L+E+AR RY +F+
Sbjct: 56 ALHINHQLQSNHDQTERACIDLCAGLGVELQVRRVNVATG---AGSLEESARAARYEVFR 112
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
+V + + LL+AHHADDQAE + RL R +GV GLAGM S + + Y
Sbjct: 113 EVLGDNDL--LLMAHHADDQAETVLFRLLRGTGVNGLAGMPVSRSLGRGHLY-------- 162
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RP L S+ + ++ + W EDP+N+S + RN +R S+
Sbjct: 163 ------RPWLGVSRSRLEQVAREQGVSWAEDPSNQSEVHDRNYLRHSV 204
>gi|118443998|ref|YP_877128.1| cell cycle protein MesJ [Clostridium novyi NT]
gi|118134454|gb|ABK61498.1| Cell cycle protein MesJ, putative [Clostridium novyi NT]
Length = 464
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 119/252 (47%), Gaps = 35/252 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + +SGGPDS+ L + K E ++A V+H LR E+ + +
Sbjct: 20 KVVVALSGGPDSICLLHILHTLK----------DEINISIVAAHVNHCLRGEAADNDEMY 69
Query: 144 SHRV-SDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
++ ++GI+C + R D ++G + A R++RY+ F++V + + IAH+A
Sbjct: 70 VKKICEELGIQCFVKREDVHRISKERGISCEMAGREVRYQFFEEVLHKINGNKIAIAHNA 129
Query: 202 DDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+DQAE ++R+ R +G+ GL G+ IF VRP+++ ++D+
Sbjct: 130 NDQAETVLMRILRGTGLEGLVGIRPVRDNIF------------------VRPIINLTRDE 171
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----ACRRTRS 316
+ C + D TN ++ RN+IR+ L +F S++ V++ +
Sbjct: 172 IENYCDINKLNPRIDKTNFENIYTRNKIRLELIPYIQKNFNSDVIEVLNRFSDTVKVDNE 231
Query: 317 YVEHVCSNLINE 328
Y+ +V NE
Sbjct: 232 YINNVAKEKYNE 243
>gi|384439095|ref|YP_005653819.1| hypothetical protein [Thermus sp. CCB_US3_UF1]
gi|359290228|gb|AEV15745.1| hypothetical protein TCCBUS3UF1_6970 [Thermus sp. CCB_US3_UF1]
Length = 520
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 101/224 (45%), Gaps = 39/224 (17%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITV 128
AF+ R+A L P + L VSGG DS+AL L + G G + +
Sbjct: 18 AFAERLAR--LAPQDPLVLAVSGGGDSVALAHLV--------RRAGRQG------VVAHL 61
Query: 129 DHGLREESKEEANIVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
DH LR ES E+ V +G R E V + R + +L+ AR +RY +V
Sbjct: 62 DHALRPESGEDLAFVRALAQRLGFAFRAERVEVGRI-ARERGENLEALARQIRYAFLHRV 120
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ +L AH DDQAE +L+L L G A + I +
Sbjct: 121 AREVGAKAILTAHTLDDQAETVLLKL--------LQGTARALGI------------REKE 160
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM 290
LLVRPLL F+++++ +G W EDP+N+ P + RN +R+
Sbjct: 161 GLLVRPLLPFAREELRAYLEGLGEAWREDPSNQDPTWDRNYLRL 204
>gi|422883026|ref|ZP_16929475.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK49]
gi|332364175|gb|EGJ41952.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK49]
Length = 425
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 118/274 (43%), Gaps = 43/274 (15%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L ++ E L
Sbjct: 3 KQEFLKKMQEKKYFQDHRKVLVAVSGGLDSMTLLQLLIDYQK----------ELAIELAI 52
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQ 184
V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 53 AHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFFG 104
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
V + L+ AHHADDQAE +RL R + + L+GM + ++C +
Sbjct: 105 NVMQEEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQYFACGE---- 154
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFK 301
L+RPLL F K D I ED +N ++RNRIR + L DL + FK
Sbjct: 155 ----LIRPLLTFHKSDFPDIQH------FEDSSNFQNDYLRNRIRNLYLPDLEKENPQFK 204
Query: 302 SELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
L+ + ++ + H+ +L E V V Q
Sbjct: 205 DSLRYLGKEIEDLQTALSHLTRDLDIENVQVFHQ 238
>gi|451822881|ref|YP_007459155.1| tRNA(Ile)-lysidine synthase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451775681|gb|AGF46722.1| tRNA(Ile)-lysidine synthase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 335
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 104/216 (48%), Gaps = 38/216 (17%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ VSGG DS L +++ A + ++ V+HGL+E+S AN V
Sbjct: 26 IAVAVSGGIDSSTLAIVS----------KHVADKLNIDMVIFHVNHGLQEKSDYWANNV- 74
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
H ++ + + EI + ++ +AR RYR F+++ I +L+AHH +DQ
Sbjct: 75 HLLAKI-LNVEIYEKKVFVNLNQSKGMEGSARIARYRAFKELSESMGIKYILLAHHLNDQ 133
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +LRL R SGV G+ GM S++ S+ +RP L K K+
Sbjct: 134 AETVLLRLLRGSGVKGMVGMRPLSRV--------------DSVFYIRPWLKVDK----KL 175
Query: 265 CQGGNRD------W--VEDPTNRSPLFVRNRIRMSL 292
+ N+ W V+DPTN+ PLF R +R+ L
Sbjct: 176 IELENKKFSLEKSWFPVDDPTNKDPLFSRGVVRLFL 211
>gi|125974740|ref|YP_001038650.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405]
gi|256005249|ref|ZP_05430216.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360]
gi|281418791|ref|ZP_06249810.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20]
gi|385780194|ref|YP_005689359.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 1313]
gi|419724092|ref|ZP_14251174.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum AD2]
gi|419726680|ref|ZP_14253701.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum YS]
gi|125714965|gb|ABN53457.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405]
gi|255990800|gb|EEU00915.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360]
gi|281407875|gb|EFB38134.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20]
gi|316941874|gb|ADU75908.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 1313]
gi|380769964|gb|EIC03863.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum YS]
gi|380779869|gb|EIC09585.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum AD2]
Length = 470
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 38/270 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLLAITVDHGLR--EESKEEA 140
+I +GVSGGPDS+ L + + E +D GL+A+ V+H LR E S +EA
Sbjct: 20 KIVVGVSGGPDSVCLLHILCKLR-----------ESMDLGLVAVHVNHMLRGDEASGDEA 68
Query: 141 NIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V + + + R D + ++ L+E R RYRLF++V + +AH
Sbjct: 69 -FVENLCKKLNVELVTRRIDIKKLAKERRLSLEETGRIERYRLFEEVADNFGAQRIAVAH 127
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
+ +DQAE ++ + R +G+ GL GM + ++RPLL +
Sbjct: 128 NKNDQAETVLMNIIRGTGLDGLRGMDYIRG------------------RIIRPLLGVERT 169
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISA----CRRTR 315
++ C+ N + D TN ++ RN+IR+ L F +++ IS +
Sbjct: 170 EIENYCRIHNLNPRIDSTNLENIYTRNKIRLDLIPYIEKLFNADIVNGISKMADLIKDDV 229
Query: 316 SYVEHVCSNLINEAVTVMDQGYAVIDLEIL 345
S++E + N+A D ++DL IL
Sbjct: 230 SFIESRTDEIYNKAKIKSDDKGVILDLNIL 259
>gi|256848386|ref|ZP_05553829.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis
101-4-CHN]
gi|256714984|gb|EEU29962.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis
101-4-CHN]
Length = 448
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VS G DSM L + + D L+ V+H LR +S++E +
Sbjct: 25 LVVAVSTGVDSMTLLHVLGSLLSA------------DQLVVAHVNHHLRAQSQQEEQFLR 72
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ MG+R + D + P+ G ++ AAR RYR F KV + + LL AHH +D
Sbjct: 73 QQCQQMGVRLYV---DQWENHPQHG-IENAARQERYRFFAKVMHETKAAYLLTAHHENDL 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +++L R G+ ++ F++ L+RPLL +K + +
Sbjct: 129 AETMLMKLLRTGDATATVGIR-EARPFANGQ-------------LLRPLLRVTKKSLVEY 174
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
+ W ED TN+ + +RNR+R
Sbjct: 175 ARVHQLKWYEDATNQEDMTLRNRVR 199
>gi|227512322|ref|ZP_03942371.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577]
gi|227084497|gb|EEI19809.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577]
Length = 478
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 101/209 (48%), Gaps = 35/209 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG----LLAITVDHGLREESKEEA 140
+ + VS G DSM L L E +D ++ VDH LRE+SK E
Sbjct: 33 VVVAVSTGIDSMTLLYLL---------------EHLDQRSPQIIVAYVDHCLREQSKRET 77
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ SD ++ +V+ W + Q ++ AAR+ RYR F++V ++Q+ VLL AHH
Sbjct: 78 VFIQQYCSDHHLK--LVQAVWNRKQHPQHGIEAAAREFRYRFFRRVLKENQVTVLLTAHH 135
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DD AE +++L R V L G+A Q +S+ +VRPLL FSK +
Sbjct: 136 GDDLAETMLMKLVRGGQVESLIGIA--EQRPTSFGS------------VVRPLLHFSKKE 181
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+++ + W ED TNR RNR R
Sbjct: 182 IHQFASSVHIKWFEDETNRDLTIQRNRFR 210
>gi|422877623|ref|ZP_16924093.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1056]
gi|332359485|gb|EGJ37304.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1056]
Length = 425
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 43/274 (15%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQDHQKVLVAVSGGLDSMTLLQLLID------SQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
I V+H R ES++E + +G++ + G + AAR RY F
Sbjct: 52 IAHVNHKQRPESEQEEKALVKIAEQLGVK---IFTSSFSGNFSEN----AARQFRYDFFG 104
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
KV + L+ AHHADDQAE +RL R + + L+GM + +++C +
Sbjct: 105 KVMQEEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGE---- 154
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFK 301
L+RPLL F K D I ED +N ++RNRIR + L +L + FK
Sbjct: 155 ----LIRPLLTFHKSDFPDIQH------FEDNSNFQNDYLRNRIRNLYLPNLEKENPQFK 204
Query: 302 SELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
L+ + ++ + H+ +L E V V Q
Sbjct: 205 DSLRYLGKEIEEWQTALSHLTRDLDIENVQVFHQ 238
>gi|399067271|ref|ZP_10748861.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Novosphingobium sp. AP12]
gi|398027171|gb|EJL20734.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
control [Novosphingobium sp. AP12]
Length = 326
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 30/222 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ + VSGGPDS+AL +L G + A TVDHGLR ES EEA V
Sbjct: 32 RLGVAVSGGPDSLALLLLANAALPGRVD-------------AATVDHGLRPESAEEAAEV 78
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +G+ ++R + G++Q AR RY + + L H ADD
Sbjct: 79 AKVCIGLGVPHAVLRV-----KVGPGNIQAEARAARYGALAEWAAVQGLAALATGHQADD 133
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE I+RL+R SG+ GLA + + S DL L+RP+LD+ + ++ +
Sbjct: 134 QAETLIMRLNRASGLAGLASVRSRGVVPGS-------DLP-----LLRPVLDWRRAELGE 181
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQ 305
+ +G VEDP+N + F R R+R +L D ++ Q
Sbjct: 182 VVRGAGLIAVEDPSNTNDRFDRVRVRKALADADWLDVRAIAQ 223
>gi|163758787|ref|ZP_02165874.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43]
gi|162284077|gb|EDQ34361.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43]
Length = 444
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 120/269 (44%), Gaps = 33/269 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + VSGG DS+ L + G ++ + L+A+TVDHGLR S +EA V
Sbjct: 33 LGVAVSGGSDSLGLLL--------GMARSVPPKQ----LVALTVDHGLRSGSADEARTVK 80
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+G+R E + W +P G LQ AR+ RY L + + +L H +DDQ
Sbjct: 81 RICRRLGVRHETLL--WKGEKPVSG-LQAKAREARYHLLSDAASRLGLAAILTGHTSDDQ 137
Query: 205 AELFILRLSRN--SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
AE +R +R GL G+ +S +F ++ ++RPLL + +
Sbjct: 138 AETLTMRRTRGLRDDAPGLIGIPQAS-LFDGRSW------------VLRPLLGVDRASIR 184
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVC 322
+ W+EDP+N F R R+R L + + KS +A + R R +E
Sbjct: 185 RYLAMAGVGWIEDPSNLDVRFERVRVRKGL-EAQAMVSKSSDEASRAIASRVRIALE--A 241
Query: 323 SNLINEAVTVMDQGYAVIDLEILNPSKIE 351
+ +++A V G + L+ ++E
Sbjct: 242 AAFVDQACGVQRDGTWRVALDGRGAGEVE 270
>gi|149186936|ref|ZP_01865245.1| ATPase [Erythrobacter sp. SD-21]
gi|148829445|gb|EDL47887.1| ATPase [Erythrobacter sp. SD-21]
Length = 325
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 130/306 (42%), Gaps = 40/306 (13%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG 122
+ ++R+ +R + L ++ + SGGPDS+AL +L G
Sbjct: 8 VERFRQDLAR---VWTLDEGEKMGIAFSGGPDSLALLLLAVEALPGSVE----------- 53
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
A TVDHGLR ES EEA + +G+ E + G++Q AR RY
Sbjct: 54 --AATVDHGLRAESAEEARNAARICEALGMPHETLSVTI-----PHGNVQAEARHARYEA 106
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
+ + + + AHHADDQAE F++R +R+SG+ GLA + ++ L
Sbjct: 107 LAEWAERRSLDYIATAHHADDQAETFLMRANRSSGLSGLAAVRAATS------------L 154
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
++++RPLL + + + I + DP+N F R R+R L ++
Sbjct: 155 GEGDLIVLRPLLPWRRSALEDIARDSGFPVAADPSNLDESFDRVRMRKGLAEVDFI---- 210
Query: 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALV 362
+++ + + R + + + E V D+ A P + FLA V
Sbjct: 211 DVEGLAGSARYLAEMQDDIDGMALEEWVRAKDEDGAP---HRYRPFARSGVDRPVFLAEV 267
Query: 363 LQFICQ 368
++ C+
Sbjct: 268 VKLFCE 273
>gi|345866218|ref|ZP_08818246.1| tRNA(Ile)-lysidine synthetase [Bizionia argentinensis JUB59]
gi|344049268|gb|EGV44864.1| tRNA(Ile)-lysidine synthetase [Bizionia argentinensis JUB59]
Length = 441
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 40/211 (18%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLR-EESKEE 139
++ + +SGG DS+ L L K L I++ H LR +ES +
Sbjct: 21 KLIIAISGGMDSVVLTHLCHKLK-----------------LNISLAHCNFNLRGDESDGD 63
Query: 140 ANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ V D+ + I + + +Q AARD+RY FQ++ Q + +L A
Sbjct: 64 EDFVLELAEDLDLEVFIESFETEVYAEEHNISIQMAARDLRYNWFQELAEQLKFDYVLTA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HHADD E F + L R +G+ GL G+ ++ + LVRP+L FS
Sbjct: 124 HHADDNLETFFINLMRGTGLDGLIGIPETNGV------------------LVRPILPFSH 165
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++ Q DW ED TN S +VRN++R
Sbjct: 166 AELKTFAQSEKIDWCEDSTNASTKYVRNKLR 196
>gi|422872080|ref|ZP_16918573.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1087]
gi|328945185|gb|EGG39340.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1087]
Length = 425
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 123/275 (44%), Gaps = 45/275 (16%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQDHQKVLVAVSGGLDSMTLLQLLID------SQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
KV + L+ AHHADDQAE +RL R + + L+GM + +++C +
Sbjct: 104 GKVMQEGHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGE--- 154
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSF 300
L+RPLL F K D I ED +N ++RNRIR + L DL + F
Sbjct: 155 -----LIRPLLTFRKSDFPDIQH------FEDSSNFQNDYLRNRIRNLYLPDLEKENPQF 203
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
K L+ + ++ + H+ +L E V V Q
Sbjct: 204 KDSLRYLGKEIEDWQTALSHLTRDLDIENVQVFHQ 238
>gi|385800613|ref|YP_005837017.1| tRNA(Ile)-lysidine synthetase [Halanaerobium praevalens DSM 2228]
gi|309389977|gb|ADO77857.1| tRNA(Ile)-lysidine synthetase [Halanaerobium praevalens DSM 2228]
Length = 464
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI L VSGGPDS+A+ L K E + +DH R+ESK EA+ +
Sbjct: 20 RILLAVSGGPDSLAMLDLFDKLKE----------ELKIEIAVAHLDHMFRKESKSEADFI 69
Query: 144 SHRVSDMGIRC--------EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
GI+ +I++ + + + AAR R+ F+ + + +L
Sbjct: 70 ERFAKKRGIQFFSKRVNLPQIIKTNKVSA-------EAAARQERFTFFKNIIAKENFDLL 122
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+AHH DQAE +L L R G+ GL G+ ++ + L+ P+L
Sbjct: 123 ALAHHKGDQAETVLLNLFRGCGLKGLGGIELQAKF--------------KELELIHPMLI 168
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
F+K ++ CQ D +N+ ++ RN IR + L +++ VI+
Sbjct: 169 FTKKEILAYCQQQKLSPSFDSSNQENIYSRNIIRNEILPLIEKKINPKVKEVIA 222
>gi|241764150|ref|ZP_04762185.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN]
gi|241366487|gb|EER60987.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN]
Length = 320
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 98/233 (42%), Gaps = 35/233 (15%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM P +A+G+SGG DS AL +L K G Q AI V HGL+
Sbjct: 8 AMEQFAPALPLAVGLSGGADSTAL-LLACARKWPGQVQ------------AIHVHHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQH--- 190
+ + + + + R +D R G E AAR RY+ F+ V H
Sbjct: 55 AADDFERHCQDLCKCLQVPLTVQR---VDARHAPGESPEDAARRARYKAFEAVVQAHPAP 111
Query: 191 -QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + +A HADDQ E +L LSR +GV GLA M + +
Sbjct: 112 FAISSIALAQHADDQVETLLLALSRGAGVAGLAAMPAR--------------WERGGVFW 157
Query: 250 VRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
RPLL + + + + WVEDPTN+ F RNRIR L +F S
Sbjct: 158 HRPLLRVAGAHVRDWLRAQGQGWVEDPTNQDERFTRNRIRAQLLPALEAAFPS 210
>gi|295395569|ref|ZP_06805763.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Brevibacterium mcbrellneri ATCC 49030]
gi|294971588|gb|EFG47469.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Brevibacterium mcbrellneri ATCC 49030]
Length = 326
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 94/224 (41%), Gaps = 38/224 (16%)
Query: 72 RRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131
R+ L+P H + VSGG DSM+L A + EF+ A+TVDHG
Sbjct: 15 RKAVEDALEPGHTYLIAVSGGADSMSLAAACAFLTRKDY-------EFV----AVTVDHG 63
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWL---DGRPKQGHLQEAARDMRYRLFQKVCI 188
L+E S E A ++D+G+ + + DG L+ AR RY +V
Sbjct: 64 LQEGSAEVAARTQRALTDLGLTATVETAEVTATSDG------LEADARTARYAALDRVAK 117
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
+ +L+AH +DQAE +L L R SG LAGM + +
Sbjct: 118 ERGAAGVLLAHTQNDQAETVLLGLLRGSGARSLAGM------------------RPRAGR 159
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+RPLL ++ + N DP N P F R ++R L
Sbjct: 160 YIRPLLGITRAETESATTAQNIPVWNDPMNSDPSFTRVKVRTQL 203
>gi|291521617|emb|CBK79910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
synthetase, C-terminal domain [Coprococcus catus GD/7]
Length = 476
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 110/251 (43%), Gaps = 35/251 (13%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE-EANIV 143
+ +GVSGG DS+ L + + Q L A+ + HGLR E+ + + + V
Sbjct: 26 VVVGVSGGADSVCLLSVLKNLQMSMALQ----------LTAVHIHHGLRGEAADRDRDFV 75
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ DM I C + D + K+ HL +EA R RY F++V + Q + +AHH
Sbjct: 76 TALCEDMQIPCVCFQAD-IRAMAKEQHLSEEEAGRKFRYDCFEEVRQERQASKIAVAHHR 134
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DD AE +L L R SG+ GL+G+ C +VRPLL + D+
Sbjct: 135 DDLAETVLLNLFRGSGLKGLSGIPMMR--------GC----------IVRPLLGVGRADI 176
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHV 321
+ D TN + RNRIR+ D+ + QA +S T + +
Sbjct: 177 EAYLGRQGMSYRNDATNFETEYTRNRIRL---DILPYVTEHINQAAVSHIAETAAIASDI 233
Query: 322 CSNLINEAVTV 332
C + N+A +
Sbjct: 234 CRYVENQAAAI 244
>gi|242061260|ref|XP_002451919.1| hypothetical protein SORBIDRAFT_04g009950 [Sorghum bicolor]
gi|241931750|gb|EES04895.1| hypothetical protein SORBIDRAFT_04g009950 [Sorghum bicolor]
Length = 105
Score = 82.8 bits (203), Expect = 6e-13, Method: Composition-based stats.
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAELF+LRLSR SGVLGLAG AF SQ+F+S ++ + + ILLVRP+L+FSKDDMYK
Sbjct: 2 QAELFVLRLSRQSGVLGLAGTAFVSQMFASNVKYDGENFRRYGILLVRPMLEFSKDDMYK 61
Query: 264 ICQ 266
+ +
Sbjct: 62 LVK 64
>gi|297570853|ref|YP_003696627.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM
20595]
gi|296931200|gb|ADH92008.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM
20595]
Length = 361
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 44/254 (17%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID---GLL--AITVDHGLREESKEE 139
+ +GVSGG DSMAL A F+ G+L A+ VDHG+R ES +E
Sbjct: 27 VLVGVSGGSDSMALAATLA---------------FVAPKLGILVHAVCVDHGIRPESVQE 71
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V + G+ E+ R D +G+ +EA D + + V+ + H
Sbjct: 72 AAFVRDILRKRGVPVEVCRVDVDGSSGPEGNAREARYDAIATYARSLGNAAGPAVVFLGH 131
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
+DQAE ++ +R SG +AGM + H D + + RP L+F++D
Sbjct: 132 TQNDQAETVLMGFARGSGAKSIAGMPAVGHL------PLHRD-----VPMQRPFLEFTRD 180
Query: 260 DMYKICQGGNRDWVEDPTNR----------SPL---FVRNRIRMSLGDLSSCSFKSELQA 306
++ +C + WV+DP+N SPL VR+RI L D+ +
Sbjct: 181 ELRTVCSELDVPWVDDPSNDLDGPWTCSDGSPLRRSAVRHRILPELQDVLGSGTIGAIAR 240
Query: 307 VISACRRTRSYVEH 320
S + + +EH
Sbjct: 241 TASMLQADNAALEH 254
>gi|260893891|ref|YP_003239988.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4]
gi|260866032|gb|ACX53138.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4]
Length = 471
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 106/236 (44%), Gaps = 33/236 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L P ++ +GVSGGPDS+AL L ++ E ++ L HGLR E+ E
Sbjct: 17 LFPGDKVVVGVSGGPDSVALLDLLYR-----LREDKELSLYVAHL-----HHGLRAEADE 66
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVLL 196
EA +VS G+ + R D + +Q L + AAR++RYR +V + +
Sbjct: 67 EAAMVSELARRYGLPFFLDRVD-VKKHAQQNKLSIETAARELRYRFLLEVAGEVGANRIA 125
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ H ADDQAE +L L R +G+ GL G+ F +RPLL
Sbjct: 126 LGHQADDQAETVLLHLLRGTGLSGLRGIPPVRGPF------------------IRPLLRV 167
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACR 312
+ ++ CQ D +N S + RNRIR L L + F + V+ CR
Sbjct: 168 RRAEIEAYCQWRGLSPCLDLSNWSLEYTRNRIRHQLLPLLAREFNPSIVEVL--CR 221
>gi|167563298|ref|ZP_02356214.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis EO147]
Length = 491
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 26/219 (11%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
+A++ L RIAL SGG DS L L A + G + +A+ V HGL
Sbjct: 19 VALSALPDDARIALAYSGGLDSTVL--LHAAARIAGAER----------CVALHVHHGLS 66
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+ + +G+R + D + QG ++ +ARD RYR + +C +H
Sbjct: 67 PNADAWLAHCAETADALGVRFDAAHVD-VPRASGQG-VEASARDARYRALETMCARHGAR 124
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253
L +A HADDQAE +L+L R +G+ GLA MA + S+ ++ +RPL
Sbjct: 125 ALWLAQHADDQAETVLLQLLRGAGIAGLAAMAPQYRPAST------------DVVRMRPL 172
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L + + + Q W++D +N + + RN +R+ +
Sbjct: 173 LHLLRAQLERYAQQHALRWIDDESNANTRYARNALRVDV 211
>gi|332879744|ref|ZP_08447434.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332682263|gb|EGJ55170.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 434
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 34/213 (15%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEA 140
H R+ + +SGG DS+ L L ++ E ++ + LR EES +
Sbjct: 11 HQRVLVAISGGIDSVVLAHLL-------YSHGAE-------VILAHCNFSLRGEESDGDE 56
Query: 141 NIVSHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V +G++ + R D + Q + Q AAR++RY F ++ + + AH
Sbjct: 57 AFVRSFAERLGVQLLVERFDTHAYAKEHQLNTQLAARELRYEWFDRMAQAYACAYIATAH 116
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
HA+D E F++ LSR SG+ GL G+ + L+RPLL FS+
Sbjct: 117 HANDNLETFLINLSRGSGLDGLLGIP------------------QQNGKLIRPLLSFSRQ 158
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+Y+ Q W ED +N S +VRN IR +
Sbjct: 159 QIYQYAQAKQLSWREDSSNASNKYVRNVIRHEI 191
>gi|149174369|ref|ZP_01852996.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797]
gi|148846914|gb|EDL61250.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797]
Length = 354
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 111/254 (43%), Gaps = 24/254 (9%)
Query: 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEE 139
P R + VSGG DSMAL L A Q+ E+ DGL+ ++HGLR S E+
Sbjct: 36 PAQRTLIAVSGGADSMAL--LRA---LKCLAQSSESLIPPDGLVIAHLNHGLRGTASDED 90
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A + + + C + L+ P G L+E R RY +V I Q + +AH
Sbjct: 91 AEWLKQECRRLSLPC-VTEKQELNQGPDSG-LEEQCRTARYGFLTRVAIAEQCTQIAVAH 148
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
DDQAE + + R +G+ GL G+ + + + L+RPLL S++
Sbjct: 149 TLDDQAETVLHHIIRGTGITGLRGIPQTRVL-------------QQGLHLIRPLLQISRE 195
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVE 319
++ + +++ D +N F RNRIR L L F V+ + +R E
Sbjct: 196 EVVEFLNVCGQEYRNDESNADTSFTRNRIRHQLLPLLKKEFNPN---VVQSIQRLSQQAE 252
Query: 320 HVCSNLINEAVTVM 333
V L E ++
Sbjct: 253 EVTCVLNAEVDQIL 266
>gi|333397743|ref|ZP_08479556.1| tRNA(Ile)-lysidine synthase [Leuconostoc gelidum KCTC 3527]
gi|406599409|ref|YP_006744755.1| tRNA(Ile)-lysidine synthase [Leuconostoc gelidum JB7]
gi|406370944|gb|AFS39869.1| tRNA(Ile)-lysidine synthase [Leuconostoc gelidum JB7]
Length = 435
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 40/216 (18%)
Query: 79 LKPHH---RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLRE 134
L+ HH I + VSGG DS+ L + + D L + V++ LRE
Sbjct: 9 LQLHHWEATIIVAVSGGVDSVVLL-------------HTLRQQLPDTKLVVAHVNYHLRE 55
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
ES + V H E + WL+ P +++ ARD RY+ F+++ ++
Sbjct: 56 ESDADEKFVRHLADKYHAIFE--QTAWLNV-PDTA-VEKQARDFRYQFFEQLASKYHTAT 111
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+++AHHADDQAE +L+L R ++ LAGM + + +VRP L
Sbjct: 112 VVVAHHADDQAETVLLKLIRGGQLMQLAGM------------------RQQNRRIVRPFL 153
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFV-RNRIR 289
+K ++ Q N +W ED TN ++ RN +R
Sbjct: 154 LITKQELVSYAQNHNLNWHEDKTNHDAMYTPRNFLR 189
>gi|167570470|ref|ZP_02363344.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis C6786]
Length = 491
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 26/219 (11%)
Query: 74 MAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133
+A++ L RIAL SGG DS L L A + G + +A+ V HGL
Sbjct: 19 VALSALPHDARIALAYSGGLDSTVL--LHAAARIAGAER----------CVALHVHHGLS 66
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+ + +G+R + D + QG ++ +ARD RYR + +C +H
Sbjct: 67 PNADAWLAHCAETADALGVRFDAAHVD-VPRASGQG-VEASARDARYRALETMCARHGAR 124
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253
L +A HADDQAE +L+L R +G+ GLA MA + S+ ++ +RPL
Sbjct: 125 ALWLAQHADDQAETVLLQLLRGAGIAGLAAMAPQYRPAST------------DVVRMRPL 172
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L + + + Q W++D +N + + RN +R+ +
Sbjct: 173 LHLLRAQLERYAQQHALRWIDDESNANTRYARNALRVDV 211
>gi|392958391|ref|ZP_10323903.1| tRNA(Ile)-lysidine synthetase [Bacillus macauensis ZFHKF-1]
gi|391875561|gb|EIT84169.1| tRNA(Ile)-lysidine synthetase [Bacillus macauensis ZFHKF-1]
Length = 466
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 79 LKPHHRIALGVSGGPDSMAL----CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR- 133
+ P I +GVSGGPDSMAL C L + ++A VDH LR
Sbjct: 15 IAPGQTIVVGVSGGPDSMALLHYLCSLRESLRLT--------------IVASHVDHQLRG 60
Query: 134 EESKEEANIVSH--RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQ 191
+ES+E+ V+ R D+ + + + + Q AAR+ RY F++V +
Sbjct: 61 KESQEDLAFVAAYCRQWDVPFSGKAIDVAAYKKQQQLTSTQVAARECRYAFFKEVMASYH 120
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVR 251
L +AHH DDQ E ++R++R S LAG+A H+ +L+R
Sbjct: 121 ADALALAHHGDDQIETMLMRMTRGSSSGALAGIAAVRPF--------------HTGVLIR 166
Query: 252 PLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
P L +K+++ C+ + +D TN + RNR R
Sbjct: 167 PFLGITKEEIEHYCKVHSFAVRQDATNDLDDYTRNRFR 204
>gi|337279181|ref|YP_004618653.1| tRNA(Ile)-lysidine synthetase [Ramlibacter tataouinensis TTB310]
gi|334730258|gb|AEG92634.1| Candidate tRNA(Ile)-lysidine synthetase [Ramlibacter tataouinensis
TTB310]
Length = 328
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 31/218 (14%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135
+ L P H + + SGG DS AL A G + A+ V HGL+
Sbjct: 25 LQALNPPHPLGVAFSGGADSTALLFAAARQWPGAVH-------------AVHVHHGLQAA 71
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIGV 194
+ + +G+ + R +D RP G E AAR RY+ +
Sbjct: 72 ADAFTEHCARSCEGLGVPLHVRR---VDARPAAGESPEDAARGARYQALAAAARDAGLAC 128
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+L+A HADDQAE +L LSR +G+ GLA M + H ++ +RPLL
Sbjct: 129 VLLAQHADDQAETLLLALSRGAGLPGLASMPAR--------------FERHGVVFLRPLL 174
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + ++EDPTN + RNRIR L
Sbjct: 175 AVPGARLRNWAREQAIAFIEDPTNADTRYTRNRIRRDL 212
>gi|315222833|ref|ZP_07864718.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211]
gi|315188069|gb|EFU21799.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211]
Length = 425
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 124/277 (44%), Gaps = 42/277 (15%)
Query: 68 EAFSRRMAMAGLKPHHR-IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F + + G HHR + L +SGG DSM L ++ E E I+ LA
Sbjct: 4 QQFFQMVQKKGYFRHHRKVLLAISGGLDSMTLLDWLYKYR--------EKLE-IEIFLA- 53
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
++HG+R+ES E + +G+ + G ++ ARD RY F+K+
Sbjct: 54 HINHGVRKESDFEEEELKKIAKKLGVS---IFTSSFSG----PFSEQKARDFRYAFFKKI 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
++ L+ AHHADDQAE +R+ R S + ++GM Q F++
Sbjct: 107 MLEENCTALVTAHHADDQAETIFMRILRGSRLFHISGMK-EKQKFANGE----------- 154
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDLSSCSFKSE 303
L+RPLL F K + I ED TN+ ++RNRIR L + + F+
Sbjct: 155 --LIRPLLSFQKSNFPPIFH------FEDWTNQENHYLRNRIRNEYFPLLEQENPQFRKH 206
Query: 304 LQAVISACRRTRSYVEHVCSNLINEAVT-VMDQGYAV 339
L + + + + + ++ N++ ++ Q Y+V
Sbjct: 207 LIELGTEISQMQDALAYLTKNIVATSLQEFQSQPYSV 243
>gi|406036842|ref|ZP_11044206.1| cell cycle protein [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 423
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 108/220 (49%), Gaps = 27/220 (12%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
AI +DH L++ S E +V + + + C I + + + G+L++ AR RY+ +Q
Sbjct: 20 AIYIDHQLQQMSTEWGTLVQKQAEVLKVPCIIQKV-----KVEAGNLEQQARQARYQAYQ 74
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
+ H+ VL++AHH DQAE +LRL +GV GLA M QI D +N
Sbjct: 75 QHLQSHE--VLVLAHHQQDQAETVLLRLFSGAGVNGLAAM---RQI----------DKRN 119
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSEL 304
++ + RP LD S+ + + Q D+V DPTN + R R L D+ F ++
Sbjct: 120 -NMTIWRPFLDLSRAHIEQWSQQLGFDYVTDPTNHDTHYDRAWCREVLWDVIQTRF-PKM 177
Query: 305 QAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI 344
Q ++ RT SY+ + ++ E V D Y D EI
Sbjct: 178 QGAVA---RT-SYLMQDTAEIL-ENVLQKDWQYCATDNEI 212
>gi|381199806|ref|ZP_09906952.1| tRNA(Ile)-lysidine synthase [Sphingobium yanoikuyae XLDN2-5]
Length = 315
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 92/214 (42%), Gaps = 45/214 (21%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R + VSGGPDSMAL L + + A T+DHGLR ES +EA +V
Sbjct: 28 RFGIAVSGGPDSMALLDLAVQ-------------AWPGRVAAATLDHGLRAESADEAAMV 74
Query: 144 SH-----RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ RV + E G++Q+ AR RY + + +L A
Sbjct: 75 ARWCAERRVPHATLAPETA---------VSGNIQDWARRQRYAQLEAWRAGAGLDWILTA 125
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HHADDQ E ++RL+R SGV GLAG+ + + ++RPLL K
Sbjct: 126 HHADDQLETLLMRLNRGSGVGGLAGV------------------RARAGRVLRPLLTVRK 167
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ +V DP+N P F R +R L
Sbjct: 168 AQLQAHADQAGLPYVLDPSNADPRFDRAALRKRL 201
>gi|229588820|ref|YP_002870939.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
SBW25]
gi|229360686|emb|CAY47544.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
SBW25]
Length = 440
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 116/251 (46%), Gaps = 35/251 (13%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L A+ V HGL+ + ++G+ ++R G L+ AARD RY+
Sbjct: 52 LGAVHVHHGLQTAADAWPAHCQSICDNLGVPLRVMRVQVQPG----ASLERAARDARYQA 107
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
F +V Q VLL H DDQAE + RL R +GV GL+ M + + Y
Sbjct: 108 FIEVTGAGQ--VLLTGQHRDDQAETLLFRLLRGAGVRGLSAMPAQRPLAAGY-------- 157
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
LVRPLL+ S+ ++ + +W+EDP+N F RN +R + L + + +
Sbjct: 158 ------LVRPLLEVSRAELEAYAEEHQLEWIEDPSNADSRFSRNYLRHRV--LPTLTERW 209
Query: 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN-PSKIEDIFLSKF-LA 360
QAV S R EH ++EA ++D+ AV+DL+ + PS + L LA
Sbjct: 210 P-QAVSSLAR----TAEH-----LSEAQGLLDE-LAVMDLQAADQPSAFPWLRLRSLTLA 258
Query: 361 LVLQFICQRQR 371
+ + RQR
Sbjct: 259 PLRELSDARQR 269
>gi|309806956|ref|ZP_07700938.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b]
gi|308166576|gb|EFO68773.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b]
Length = 409
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+ +S GPDSMAL + +Q L+ VDH LR +S E+ I++
Sbjct: 1 MAISAGPDSMALLDMMRQIVDDPQSQ----------LIICHVDHCLRNDSYLESEIITKY 50
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
++ E + W P G L+ AARD RY F K+ ++Q L AHH DD AE
Sbjct: 51 CQQYKLQLEETK--WDTPHPANG-LEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAE 107
Query: 207 LFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
+++L R+ V + + + I +S LLVRPLL FSK+++
Sbjct: 108 NILIKLLRSGNVQEMNSLRPIRNWIDNS--------------LLVRPLLSFSKEELLVYA 153
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIR 289
+ +V D TN+ +RNR+R
Sbjct: 154 KKRKLAYVVDYTNQENETLRNRLR 177
>gi|94986853|ref|YP_594786.1| ATPase [Lawsonia intracellularis PHE/MN1-00]
gi|442555685|ref|YP_007365510.1| tRNA(Ile)-lysidine synthetase [Lawsonia intracellularis N343]
gi|94731102|emb|CAJ54464.1| predicted ATPase of the PP-loop superfamily implicated in cell
cycle control [Lawsonia intracellularis PHE/MN1-00]
gi|441493132|gb|AGC49826.1| tRNA(Ile)-lysidine synthetase [Lawsonia intracellularis N343]
Length = 341
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 33/210 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ +G SGG DSMAL ++ ID + A +DH LR ESK++AN V
Sbjct: 40 VIVGCSGGVDSMALALILHCLG-------------IDVVFA-HMDHQLRAESKDDANHVK 85
Query: 145 HRVSDMGIRCEIVRCDW--LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + RC I R D L + K+G ++E AR RY ++V ++ + HH +
Sbjct: 86 SFAAALDRRCIISRVDISGLAIKYKKG-IEETARQERYCFLEQVRKEYGAQWIATGHHLN 144
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D +E +LRL R +G GLAGM D K + L+RPLL + +
Sbjct: 145 DLSEDILLRLLRGTGWPGLAGMKAV-------------DKKRY---LLRPLLTTRRTLLV 188
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
N WVED +N+ F RNRIR ++
Sbjct: 189 SFLSSQNISWVEDNSNKDITFKRNRIRHTI 218
>gi|89100508|ref|ZP_01173369.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
gi|89084774|gb|EAR63914.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
Length = 462
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 126/297 (42%), Gaps = 36/297 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ +GVSGGPDS+AL L WK A AI DH R EES +EA
Sbjct: 21 KVLVGVSGGPDSLALLHLL--WKKRKVWGAEPA--------AIHFDHMFRGEESYQEARF 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHL-QEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + I E+ R D + G Q AAR+ RYR F++ L + HH
Sbjct: 71 VQSFCEERNIPFEMRREDVSAYMKESGKSSQTAARECRYRFFEEAMKASGASYLALGHHG 130
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++RL+R S +G+ FS ++RP L + ++
Sbjct: 131 DDQMETILMRLTRGSTGEARSGIPFSRPFGGGE--------------IIRPFLCLERGEI 176
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMS-LGDLSSCSFKS--ELQAVISACRRTRSYV 318
+ C D DP+N ++ RNR R + L L S + ++ Q R +
Sbjct: 177 EEYCLSNELDPRRDPSNEKDVYSRNRFRRNVLPFLKSENPQAHVHFQRFSEELRGDEQLL 236
Query: 319 EHVCSNLINEAVTVMDQGYAVIDLE--ILNPSKIEDIFLSKFLALVLQFICQRQRPV 373
+ + + +N + + ID E +L P ++ + + L+L ++ Q +RP
Sbjct: 237 QELTAREMNTVMKKKEDAEITIDAERFMLMPMPLQ----RRGIQLILNYLYQ-ERPA 288
>gi|333373049|ref|ZP_08464967.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Desmospora sp. 8437]
gi|332970936|gb|EGK09910.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Desmospora sp. 8437]
Length = 477
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 95/225 (42%), Gaps = 56/225 (24%)
Query: 85 IALGVSGGPDSMAL------CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK- 137
+ +GVSGGPDS AL T GWK A+ V+HGLR E+
Sbjct: 23 VLVGVSGGPDSTALLHALSRIAPTHGWKVA----------------AVHVNHGLRGENSR 66
Query: 138 ----------EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
E I H V +G+R + + K G+ Q AR +RY F +V
Sbjct: 67 GDEKYVRTCCEHWQIPCH-VEQVGVRQVLAQ--------KGGNKQAVARSLRYAAFLRVA 117
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
+ L +AH ADDQ E ++RL R +G GLAG+ + + +
Sbjct: 118 RRVGAECLALAHQADDQVETLLMRLIRGTGPAGLAGIPATREW--------------RGL 163
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+VRPLL+ + D+ C D +NR P RNRIR L
Sbjct: 164 RIVRPLLEVWRSDVEAYCTRYGLTPRLDESNRDPRHTRNRIRHHL 208
>gi|423317370|ref|ZP_17295275.1| tRNA(Ile)-lysidine synthetase [Bergeyella zoohelcum ATCC 43767]
gi|405581503|gb|EKB55532.1| tRNA(Ile)-lysidine synthetase [Bergeyella zoohelcum ATCC 43767]
Length = 431
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 129/303 (42%), Gaps = 65/303 (21%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSH 145
L +SGG DSM L L K + +++ LR E S + +V+
Sbjct: 27 LAISGGVDSMVLLQLCIQLKIH--------------IEVAHINYHLRAENSDADEALVTK 72
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+ I I D+ + K ++Q AR++RY F K+ + +I ++ AHH +DQ
Sbjct: 73 ICTQNHIPIHIYHADF--KQSKNKNIQTWAREIRYDFFHKIRKERKIDYIMTAHHLNDQL 130
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E F + L R +GV GL G+ N ++RPLL+FSK ++Y
Sbjct: 131 ETFFIHLMRGTGVRGLCGIP------------------NAENKIIRPLLNFSKKEIYDFA 172
Query: 266 QGGNRDWVEDPTNRSPLFVRN-------------------RIRMSLGDLSSCSFKSELQA 306
+ ED +N ++ RN R +LG L + + ++
Sbjct: 173 LQNAILFREDESNTKNIYQRNFLRNEIIPQLEKIQPMFLDNFRQTLGHLQAT--QKAMKT 230
Query: 307 VISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNP------SKIEDIFLSKFLA 360
+I R T S ++ +L +A+ MD A+I EIL P ++IE IF ++ A
Sbjct: 231 LIEEKRNTISQEKNEQISLDKDALQKMD---ALIQYEILKPFGMQNSTEIEKIFHAETGA 287
Query: 361 LVL 363
+ +
Sbjct: 288 IFM 290
>gi|306490874|gb|ADM94993.1| predicted PP-loop superfamily ATPase [uncultured candidate division
JS1 bacterium]
Length = 460
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ + VSGGPDS+ L + N ++ L+ V HG+R +ES EA
Sbjct: 7 KVIVAVSGGPDSICLLDIL----------NHVKHKYNLSLIIAHVHHGIRIKESDIEARF 56
Query: 143 VSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V + + + + E V D R K +++A R +RY+ F + ++Q + + H+A
Sbjct: 57 VRLKSAHLKLPFEQVTISVPDIARNKGLSIEQAGRTIRYQFFNNLLNKYQAQKIALGHNA 116
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E ++R+ R SG+ GL G+ F +RPL++ ++ ++
Sbjct: 117 DDQVETILMRIIRGSGLRGLRGIPPKRGAF------------------IRPLIECNRSEI 158
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
CQ N + D +N+ P ++RN+IR L
Sbjct: 159 VAYCQRNNIAYCIDSSNKEPKYLRNKIRHQL 189
>gi|254460357|ref|ZP_05073773.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium HTCC2083]
gi|206676946|gb|EDZ41433.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium HTCC2083]
Length = 389
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 34/273 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DS AL VL F + L AIT+DHGLR ++ EA +
Sbjct: 13 LGIALSGGSDSTALLVLA----VDAFGA--------ENLQAITIDHGLRAAAQAEARQAA 60
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ--HQIGVLLIAHHAD 202
+ +G+ I DG LQ AR+ RY + I + + H D
Sbjct: 61 KLCASLGVPHTIRTLALKDG----PDLQARARNARYMALGDWARAQLNSIPAIALGHTKD 116
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D +E F++RL+R SGV GLA M + + ++ RPLL S+ +++
Sbjct: 117 DVSETFLMRLARGSGVDGLATMP--------------EYFERAGMVFKRPLLAASRAELH 162
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSE-LQAVISACRRTRSYVEHV 321
+ W EDP+N+ P F R ++R + L + S+ L R +E+
Sbjct: 163 AMLTKRGITWSEDPSNQDPRFTRVKMRQAQATLDTLDLTSDRLSQTADWMRAASEVLENA 222
Query: 322 CSNLINEAVTVMDQGYAVIDLEILNPSKIEDIF 354
N I + G V+DL+ L + E F
Sbjct: 223 ADNWITTHA-YTEYGDVVLDLQALRTAPKETAF 254
>gi|49474667|ref|YP_032709.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse]
gi|61216506|sp|Q6FYQ5.1|TILS_BARQU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|49240171|emb|CAF26635.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse]
Length = 476
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 119/265 (44%), Gaps = 37/265 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ L VSGG DS+AL L + + ++ +TVDH LR ES EA V
Sbjct: 20 KVILAVSGGSDSLALLFLV--------KDHLKTFSIPTEIIVVTVDHQLRRESACEAESV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ I+ IVR W +PK H+ +AR +RY L K + +++ H +D
Sbjct: 72 AEICRAHHIQHVIVR--WEGKKPKT-HIISSARTVRYNLLFKEAQKQGATLIMTGHTLND 128
Query: 204 QAELFILR---LSRNSGVL----------GLAGMAFSSQIF-SSYAY------SC--HDD 241
Q E + +R L +++ VL G+ + I SY SC +
Sbjct: 129 QVETYQMRCQRLQKSADVLQREAFEDMRDGVCSTETRANIAEKSYGLMYERGLSCIPREA 188
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFK 301
L N ++ L+RPLL + + + + W++DPTN +P F R R+R S L F
Sbjct: 189 LLNQTVRLIRPLLGVKRKTLRAYLRLKGKTWIDDPTNENPNFERVRVRQS---LHPKKFA 245
Query: 302 SELQAVISACRRTRSYVEHVCSNLI 326
Q V A + R ++V +NLI
Sbjct: 246 GIAQKVHEATLQRRKQAQNV-ANLI 269
>gi|334345241|ref|YP_004553793.1| tRNA(Ile)-lysidine synthase [Sphingobium chlorophenolicum L-1]
gi|334101863|gb|AEG49287.1| tRNA(Ile)-lysidine synthase [Sphingobium chlorophenolicum L-1]
Length = 314
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 41/212 (19%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R + VSGGPDSMAL L A F + A TVDHGLRE S +EA +V
Sbjct: 25 RFGVAVSGGPDSMALLDLAAR-------------AFSGRVEAATVDHGLREASADEAAMV 71
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK---QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ + GI + PK +G++Q AR RY L ++ + LL AHH
Sbjct: 72 ADWCGNAGIAHATLH-------PKGAVRGNVQSWARSQRYALLEEWRTAQGLDWLLTAHH 124
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
ADDQ E ++RL+R ++ +++RPLL K +
Sbjct: 125 ADDQLETLLMRLNR------------------GAGVGGLAGVRARQGVVLRPLLGMRKAE 166
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + +++DP+N P F R +R +L
Sbjct: 167 LLAYALEQDLPYIDDPSNSDPRFDRAALRSAL 198
>gi|332685802|ref|YP_004455576.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311]
gi|332369811|dbj|BAK20767.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311]
Length = 465
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 137/327 (41%), Gaps = 47/327 (14%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
+R+ L +SGG DSM L L + + ID +A V+H +REES EEA
Sbjct: 19 NRLLLAISGGVDSMVLLHLI---------EQLQKKIPIDFAVA-HVNHKIREESIEEAAY 68
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V I W + + K +++ AR RY F + Q + LL AHH D
Sbjct: 69 VCTYCKQKNI--PYYETSWEEAKDK--NIEARARKFRYSFFANLMKQERYTHLLTAHHLD 124
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++++ R + + LAG+ Q FS LVRP L FSK+ +
Sbjct: 125 DQAETMLMKMVRGTTLKNLAGIQL-QQDFSIGK-------------LVRPFLIFSKEQIR 170
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVISACRRTRSYVE 319
+ ED TN S + RNR+R + L + F + + S ++
Sbjct: 171 NYAIDKKIMYFEDNTNYSDSYARNRMRHQIIPLLKQENKQFLEHMAGLSQQITAASSLID 230
Query: 320 HVCSNLINEAVTVMDQ-GYAVIDLEILNPSKIEDIFLSKFLALVL----QFICQRQRP-- 372
+ + N+ V + Y +D + + + FL F +L I Q Q
Sbjct: 231 SMITPYFNQWVHQSNAIWYLQLDDLLKQTEEFQLFFLMDFFQRILIPENVLINQAQMKQA 290
Query: 373 ---VRGST--SKLLL----HYIRTFPC 390
+ GST +K++ H+IRT+ C
Sbjct: 291 LTILNGSTPQAKMIFGSNWHFIRTYNC 317
>gi|297563883|ref|YP_003682856.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848332|gb|ADH70350.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 334
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 89/200 (44%), Gaps = 31/200 (15%)
Query: 90 SGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149
SGG DS+AL A F EA A+TVDHGL+E S A V+ ++
Sbjct: 33 SGGADSLALAGAVA------F----EAPRVGRTAGAVTVDHGLQEGSDRRAEDVAKVLAG 82
Query: 150 MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209
+G+ +VR + G G + +AR RY + V+L+ H DDQAE +
Sbjct: 83 LGLDPVLVRTVRVTG---PGGPEASARRARYEALDGAVAERAPAVVLLGHTLDDQAETVL 139
Query: 210 LRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269
L L+R SG LAGMA H + RPLLD + + + C
Sbjct: 140 LGLARGSGARSLAGMAPRV---------------GHRL---RPLLDLDRATVREACARMG 181
Query: 270 RDWVEDPTNRSPLFVRNRIR 289
D EDP N P F R+R+R
Sbjct: 182 LDAWEDPHNLDPRFARSRVR 201
>gi|363582103|ref|ZP_09314913.1| tRNA(Ile)-lysidine synthase [Flavobacteriaceae bacterium HQM9]
Length = 444
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 36/208 (17%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + +SGG DS+ L L K GF+ + + + LR +
Sbjct: 21 VGVAISGGVDSVVLAYLL---KEAGFD-----------IALLHCNFQLRNIASSGDQAFV 66
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGH---LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
R+SD + ++ + H +Q AAR++RY+ F+K+ H +G + AHHA
Sbjct: 67 KRLSDQW-NVPFITTEFNTNAYAEIHKTSIQIAARELRYQWFEKMAKIHHLGSIATAHHA 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DD E F++ SR +G+ GL G+ + +F +RPLL F+K+++
Sbjct: 126 DDNLETFLINFSRGTGLEGLTGIPEKNGLF------------------IRPLLKFTKNEL 167
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ N W ED +N ++RN++R
Sbjct: 168 IAFAKNENLCWREDASNSDVKYLRNQLR 195
>gi|325106138|ref|YP_004275792.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145]
gi|324974986|gb|ADY53970.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145]
Length = 449
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 44/215 (20%)
Query: 85 IALGVSGGPDSMALCVL--TAGWKTG----GFNQNGEAGEFIDGLLAITVDHGLREESKE 138
I L SGG DSMA+ L +G+KT FN GE ES
Sbjct: 24 ILLATSGGRDSMAMVYLFHLSGFKTAIAHCNFNLRGE-------------------ESVR 64
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+ V + + I D + + +Q AARD+RY F+ +C + + + +
Sbjct: 65 DEIFVKNTALKLNTPIHIAHFDTTNYAEEHKISIQMAARDLRYDFFEDLCAEFKYQKIAV 124
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHH +D E +L L R +G+ GL G+ S ++RPLL F+
Sbjct: 125 AHHHNDSIETVLLNLIRGTGIAGLHGIKHSKNT------------------IIRPLLCFT 166
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++++ + D+VED +N S + RN+IR+ +
Sbjct: 167 REEIDQFVSEQKIDFVEDSSNASDKYARNKIRLKI 201
>gi|83588977|ref|YP_428986.1| tRNA(Ile)-lysidine synthetase-like protein [Moorella thermoacetica
ATCC 39073]
gi|83571891|gb|ABC18443.1| tRNA(Ile)-lysidine synthetase-like protein [Moorella thermoacetica
ATCC 39073]
Length = 455
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 36/239 (15%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
L P ++ +GVSGGPDS+AL L + G+ L ++HGLR E+
Sbjct: 15 LVPGDKVVVGVSGGPDSLALLHSLMTLQEEYGYT-----------LQVAHLNHGLRPEAA 63
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRLFQKVCIQHQIGVL 195
+A V + G+ + + D L R ++ HL + AAR++RY FQ+V +
Sbjct: 64 ADAEYVRDLATGWGLPVTVAQRDVLAYR-QEHHLSIEAAAREVRYNFFQEVAAAVGATRI 122
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ H A+DQAE +L L R SG+ GL M L+RPLL
Sbjct: 123 AVGHQAEDQAETVLLNLLRGSGLTGLKAML------------------PRRGRLIRPLLF 164
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT 314
++ ++ C+ D TN P + RN+IR L L + + A+++ RT
Sbjct: 165 VTRAEIEAYCRDNGLHPRRDFTNEDPAYRRNKIRHQLLPLLAREYNP---AIVATLGRT 220
>gi|429749461|ref|ZP_19282583.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429168114|gb|EKY09966.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 418
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSH 145
+ +SGG DS+ L L + G I+ +LA + LR ES + V
Sbjct: 6 VAISGGVDSVVLAHL--------LHSQG-----IEIVLA-HCNFSLRGAESDADEAFVRQ 51
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ +G+ E+VR + G + Q AAR++RYR F ++ +H + AHHA+D
Sbjct: 52 YAATLGVALEVVRFNTKQYAKDCGLNTQLAARELRYRWFAEMAKKHHCSAIATAHHANDN 111
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E FI+ LSR SG+ GL G + + LVRPLL ++++
Sbjct: 112 IETFIINLSRGSGLDGLLG------------------IPQQTAQLVRPLLHMQREEILSY 153
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
Q W ED +N + +VRNRIR
Sbjct: 154 AQQHGLQWREDSSNHTDKYVRNRIR 178
>gi|94967093|ref|YP_589141.1| tRNA(Ile)-lysidine synthetase-like protein [Candidatus Koribacter
versatilis Ellin345]
gi|94549143|gb|ABF39067.1| tRNA(Ile)-lysidine synthetase-like protein [Candidatus Koribacter
versatilis Ellin345]
Length = 464
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 115/271 (42%), Gaps = 28/271 (10%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EE 135
A +P R+ + VSGG DS+AL G E G L + + HG+R E
Sbjct: 13 ALFRPGDRVGVAVSGGADSVALL-------RGLLELRSELG---IALSVVHLHHGIRGAE 62
Query: 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGV 194
+ + V+ + + R D ++ L+ AARD+RY F+++
Sbjct: 63 ADADEQFVADLAGQFDLSLHLERVDVPSHSSQEKLSLETAARDLRYAFFRRLLESSACDK 122
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+ AH DDQAE +LR+ R +G GLA + D + +VRPLL
Sbjct: 123 VATAHTLDDQAETVLLRILRGTGTRGLAAIP-----------PFRDASPELAACIVRPLL 171
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----A 310
+ ++ + N+ W ED TN P +RNRIR L + + L+ ++
Sbjct: 172 GTERTEVETYLKSLNQPWREDSTNTDPKHLRNRIRHELLPMLEAEYNPALRQSLANLAEI 231
Query: 311 CRRTRSYVEHVCSNLINEAVTVMDQGYAVID 341
R Y + ++ VT+ + G AV+D
Sbjct: 232 ARAEEEYWGPIVERHFDQIVTMTNFG-AVLD 261
>gi|440737178|ref|ZP_20916751.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens BRIP34879]
gi|440382360|gb|ELQ18864.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens BRIP34879]
Length = 435
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
+ + L AI V HGL+ + + +G+ ++R G L+ AARD
Sbjct: 42 QTLPSLHAIHVHHGLQVVADAWPSHCQSVCDSLGVPLRVIRVQVQPG----ASLERAARD 97
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY+ F +V + VLL H DDQAE + RL R +GV GLA M + A
Sbjct: 98 ARYQAFGEVLGAEE--VLLTGQHRDDQAETLLFRLLRGAGVRGLAAMP----AYRPLARG 151
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
C LVRPLLD S+ ++ W+EDP+N P F RN +R
Sbjct: 152 C----------LVRPLLDVSRAELEAYAAEHQLRWIEDPSNADPRFSRNYLR 193
>gi|357419778|ref|YP_004932770.1| tRNA(Ile)-lysidine synthetase [Thermovirga lienii DSM 17291]
gi|355397244|gb|AER66673.1| tRNA(Ile)-lysidine synthetase [Thermovirga lienii DSM 17291]
Length = 467
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 41/259 (15%)
Query: 80 KPHHRIALGVSGGPDSMAL-CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-SK 137
+P ++ + VSGG DS+AL +L W D L+ VDHG+R+E SK
Sbjct: 27 EPCGKMVVAVSGGSDSVALLWLLCQVWDK-------------DKLVVAHVDHGIRKETSK 73
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+A V + G+ +++ + K ++ AAR +RY F+K +G I
Sbjct: 74 RDALFVRNLAESWGLNIALLQVEVPKLCKKGESIEVAARRIRYDFFEKTA--KSVGARWI 131
Query: 198 A--HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
A H A+DQAE + + R G+ GLAG+ +VRP++D
Sbjct: 132 ALGHTANDQAETVLHNIIRGCGIKGLAGIP------------------ERRGKIVRPIID 173
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTR 315
F + ++ ++ + +WV D TN ++ RN+IR++L +F + +
Sbjct: 174 FYRKELMELLRSKGIEWVSDETNDETIYTRNKIRLNLIPYIERNFNKQFVKHLLGI---- 229
Query: 316 SYVEHVCSNLINEAVTVMD 334
S + +NL+ E +D
Sbjct: 230 SEIARPLANLVEEEAAKLD 248
>gi|224367622|ref|YP_002601785.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium
autotrophicum HRM2]
gi|223690338|gb|ACN13621.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium
autotrophicum HRM2]
Length = 362
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 147/348 (42%), Gaps = 49/348 (14%)
Query: 61 TDMTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
T T + E R + + G+ P I LGVSGGPDS+AL + A
Sbjct: 5 TKRTPFTEKVCRTLEVHGMVTPGDSILLGVSGGPDSVALAI---------------ALVL 49
Query: 120 IDGLLAIT-----VDHGLRE-ESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQ 172
+ L IT ++H LR+ ES + V + + ++ D R +Q L+
Sbjct: 50 LRKDLGITLGIAHINHLLRDKESDRDEAFVQELARSLELPFHPLKIDVATLARERQISLE 109
Query: 173 EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232
E AR++RY F +C + + H DD AEL ++ L R SG GLAG+
Sbjct: 110 ETAREVRYAFFTDLCRHNGYTRTAVGHTLDDNAELVLMNLLRGSGPRGLAGIP------- 162
Query: 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+++H I +RPL+ +K ++ + + +V D TN +F+RNRIR L
Sbjct: 163 --------PVRDHWI--IRPLIGHTKGEILAFLREKAQAYVVDSTNLETVFLRNRIRNEL 212
Query: 293 GDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNP--SKI 350
L + + ++ R + S + NEA V + I LE P S
Sbjct: 213 LPLLRKEYNPRITENLNRVSRIMGEED---SWMDNEAGAV----FKTIRLEKKGPGVSLC 265
Query: 351 EDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKTSLTAAG 398
D F AL + + + + V+G ++ L ++ + T+ G
Sbjct: 266 LDGFNGLLPALKRRIVRKAIQAVKGDLKRITLPHVDAVAALAAATSPG 313
>gi|189461602|ref|ZP_03010387.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136]
gi|189431712|gb|EDV00697.1| tRNA(Ile)-lysidine synthetase [Bacteroides coprocola DSM 17136]
Length = 426
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 47/254 (18%)
Query: 84 RIALGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEA 140
+I + +SGG DS+AL +L G+ +A + LR EES +
Sbjct: 21 KILVALSGGADSVALLRVLLLEGYNC----------------VAAHCNFHLRGEESDRDE 64
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRP--KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + + + +++ D +G K+ ++ AAR++RY F++V +Q V+ +A
Sbjct: 65 EFVQNLCRGLDVPLQVIHFD-TNGYASRKRISIEMAARELRYEWFEQVRLQVGASVIAVA 123
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DD E F+L L R +G+ GL G+A + +VRPLLD S+
Sbjct: 124 HHRDDSVETFLLNLVRGTGINGLKGIAAVNG------------------KVVRPLLDVSR 165
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT---- 314
DD+ +D+V D TN ++RN++R+++ L S +++ RR
Sbjct: 166 DDILAFLADLKQDYVTDSTNLEDEYLRNKLRLNVIPLLKEINPSVCESITETARRLSDVE 225
Query: 315 ---RSYVEHVCSNL 325
R ++ VC+ +
Sbjct: 226 AVYRKSIQTVCTEV 239
>gi|418298601|ref|ZP_12910439.1| hypothetical protein ATCR1_13783 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355536514|gb|EHH05787.1| hypothetical protein ATCR1_13783 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 450
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
P H I + +SGG DS L +L T G ++ L A+TVDH LR ES +E
Sbjct: 33 NPAH-ILVAISGGSDSTGL-LLALHEATAGVGKDRLR------LSAVTVDHALRAESADE 84
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A V+ +++GI R W +P G L EA+R RYRL +V ++ +++ H
Sbjct: 85 ACKVAMLCAELGIPHVTRR--WDGAKPASG-LSEASRLARYRLIAEVALETGADLVVTGH 141
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
DQ E +R +RN G LGL+GMA + S Y ++RP L
Sbjct: 142 TIGDQRETVAMRAARNGGSNNLGLSGMADAVLYDSRY-------------WVMRPFLMCE 188
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + R W++DP+N + + R R+R +L
Sbjct: 189 RQAIRDYVSSRERGWLDDPSNENIRYERVRVRQAL 223
>gi|323497993|ref|ZP_08103002.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326]
gi|323317038|gb|EGA70040.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326]
Length = 434
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 33/273 (12%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
A L PH R+ +G SGG DS L L A F Q ++ LA+ V HGL +
Sbjct: 13 AHLNPHSRLVIGFSGGVDSQVLLTLAAR-----FGQ-----QYQCECLAVHVHHGLSGNA 62
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
A + + G+ + + + +P+ ++ AR+ RY+ + ++H VLL
Sbjct: 63 DRWAEQCAQWAHERGVPFVVEK---VILQPQGKSIEACAREARYQALAQ-HLEHG-DVLL 117
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
HADDQ E F+L + R SG GL+ MA + Y ++RPLL+
Sbjct: 118 TGQHADDQLETFLLAVKRGSGPKGLSAMAQCRSFANGY--------------MLRPLLEV 163
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG---DLSSCSFKSELQAVISACRR 313
++ + W ED +N+ F RN IR + + FK+ +Q C
Sbjct: 164 NRSTIEAFAVEHQLQWAEDESNQDTRFDRNYIRHQVAPALNQRWPHFKAAVQRSAQLCFE 223
Query: 314 TRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN 346
+ ++ + S ++E +T D G ++ L L+
Sbjct: 224 QEALLDELLSEKLSE-LTAADDGLSIAGLTSLS 255
>gi|424788794|ref|ZP_18215544.1| tRNA(Ile)-lysidine synthetase [Streptococcus intermedius BA1]
gi|422112574|gb|EKU16361.1| tRNA(Ile)-lysidine synthetase [Streptococcus intermedius BA1]
Length = 425
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 101/223 (45%), Gaps = 38/223 (17%)
Query: 68 EAFSRRMAMAGLKPHHR-IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F + + G HHR I L +SGG DSM L W + + E I+ LA
Sbjct: 4 QRFFQLVQKKGYFKHHRKILLAISGGLDSMTLL----DW-LYKYRKKLE----IEICLA- 53
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
V+HGLREES E + +G+ + G ++ AR RY F+K+
Sbjct: 54 HVNHGLREESDFEEQELKKIAKKLGVN---IFTSSFSG----PFSEQKARAFRYSFFKKI 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ Q L+ AHHADDQAE +R+ R S + ++G+ Q F++
Sbjct: 107 MKEEQCTALVTAHHADDQAETIFMRILRGSRLFHISGIK-EKQRFANGE----------- 154
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL F K D I ED TN+ ++RNRIR
Sbjct: 155 --LIRPLLSFQKSDFPTIFH------FEDWTNQENHYLRNRIR 189
>gi|417934779|ref|ZP_12578099.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis bv. 2 str.
F0392]
gi|340771349|gb|EGR93864.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis bv. 2 str.
F0392]
Length = 425
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 93/212 (43%), Gaps = 39/212 (18%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
K H ++ L +SGG DSM L L + ++ E L+ V+H R ES
Sbjct: 16 FKKHSKVVLALSGGLDSMFLFQLLSTYQK----------ELEIELIVTHVNHKQRRESDW 65
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA-ARDMRYRLFQKVCIQHQIGVLLI 197
E N + + G+ I G EA AR+ RY F+K+ + L+
Sbjct: 66 EENELRKLANVAGLPIYITSFS--------GDFSEARAREFRYDFFRKIMKEVGATALVT 117
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHHADDQ E ++RL R S + L G+ S + DD++ ++RPLL F
Sbjct: 118 AHHADDQVETILMRLIRGSRLRHLTGIKESQVV---------DDIE-----IIRPLLHFH 163
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
K D I ED +NR + RNRIR
Sbjct: 164 KKDFLPIVH------FEDQSNRENAYFRNRIR 189
>gi|313113474|ref|ZP_07799063.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310624201|gb|EFQ07567.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 485
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 34/216 (15%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE- 138
+P H +A VSGG DSMAL + + EF L A V+HGLR E+ +
Sbjct: 24 EPLH-LAAAVSGGADSMALLRILLALQP----------EFGFVLSACHVNHGLRGETADR 72
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLD---GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+ V + +G+ + + G P + ++ AR +RY F ++C + I +
Sbjct: 73 DEAFVRAECARLGVPLRVFHAAEMADEVGLPPEHAGEDWARRLRYACFARLCGEG-IDDV 131
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
AH A+DQAE +LRL+R +G+ G AG+ + +RPLL
Sbjct: 132 ATAHTANDQAETLLLRLARGTGLHGAAGIRPKRGCY------------------LRPLLA 173
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS 291
++ D C+ + WV D TN + + RNR+R +
Sbjct: 174 LTRQDTESFCRAAGQAWVTDETNATDAYARNRVRRA 209
>gi|282892295|ref|ZP_06300691.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497886|gb|EFB40237.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 426
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 29/237 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANIV 143
I +G+SGGPDS+AL L + + I L I +DH R+ES++EA +
Sbjct: 19 ILVGLSGGPDSIALLYLLL-----------KCAKMIPLKLGIAHIDHRWRQESEKEAETL 67
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + LD G+L+ A RD+RY+ F +V + +++ HH DD
Sbjct: 68 KTLAESLHVPFHLKV---LDPTSMHGNLEAACRDLRYQFFAEVAAIYDYQAVVLGHHQDD 124
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE + R+ + ++ L G+A + Q + + RPLL+ K +
Sbjct: 125 QAETILKRILEGASLVKLRGIAETKQ--------------QGGLAIWRPLLEVDKAKILS 170
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH 320
+ + D TN P F+R ++R + + F E+++ + + +EH
Sbjct: 171 WLSKHDIPFFNDSTNLDPKFLRGKMRSRMMPYLAKEFGKEIKSALLYLGKESEELEH 227
>gi|298208541|ref|YP_003716720.1| cell-cycle protein [Croceibacter atlanticus HTCC2559]
gi|83848464|gb|EAP86333.1| putative cell-cycle protein [Croceibacter atlanticus HTCC2559]
Length = 436
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 123/285 (43%), Gaps = 46/285 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLR-EESKEE 139
++ L VSGG DSM L L K G N I + H LR +ES +
Sbjct: 20 KLLLAVSGGLDSMVLLHLC---KASGLN--------------IAIAHCNFNLRGKESDAD 62
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+V + I C + + + +Q AAR++RY+ F +V + +L A
Sbjct: 63 TLLVKEEADRLQITCHVEHFNTESYAADIKVSIQIAARELRYQWFDEVIKEFDYNYVLTA 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH +D E FI+ L+R +G+ GL+G+ + ++RPLL FS+
Sbjct: 123 HHLNDDVETFIINLTRGTGLDGLSGIPKVNNT------------------IIRPLLPFSR 164
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM----SLGDLSSCSFKSELQAVISACRRT 314
++++ W ED +N S ++RN IR L DL+ F + +++
Sbjct: 165 EEIHTYALAEKIIWREDASNASDKYLRNSIRHHIIPKLEDLNPV-FLDNFKRTQHHLQQS 223
Query: 315 RSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL 359
+E + L VT D+G++ I L LN + D L + L
Sbjct: 224 SKLIEDYTNVLFKTLVTHTDKGFS-ISLTKLNDFENHDAILYQLL 267
>gi|89891402|ref|ZP_01202908.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
gi|89516433|gb|EAS19094.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
Length = 443
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 44/214 (20%)
Query: 83 HRIALGVSGGPDSMALC--VLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLRE-ES 136
+R+ + +SGG DS+ L + AG+ IT+ H LR+ ES
Sbjct: 19 NRLLIAISGGLDSVVLTHLLFNAGYD-------------------ITLAHCNFNLRDSES 59
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVL 195
++ V I C + + + G Q AAR++RY F +C H +
Sbjct: 60 DQDEQFVRELADRFKIDCHVTQFETSQYASDHGVSTQMAARELRYDFFNDLCKDHNYDFI 119
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
L AHH DDQ E F + L+R +G+ GL G+ Q+ + ++RPLL
Sbjct: 120 LTAHHLDDQIETFFINLNRGAGLKGLQGIP---QLNGN---------------VIRPLLP 161
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
FS++ + + W ED +NRS + RN++R
Sbjct: 162 FSREQIMEYAMNSQVLWREDSSNRSNKYQRNQLR 195
>gi|93005006|ref|YP_579443.1| tRNA(Ile)-lysidine synthetase-like protein [Psychrobacter
cryohalolentis K5]
gi|92392684|gb|ABE73959.1| tRNA(Ile)-lysidine synthetase-like protein [Psychrobacter
cryohalolentis K5]
Length = 535
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 36/230 (15%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
LT M +Y E R RI L SGG DS+AL L Q G F
Sbjct: 28 LTSMAEYGEQLQGR----------RIWLACSGGRDSLALAALCVQ-----LYQQGRL-PF 71
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
+ LL V+HGL+ +S A V++ I C I++ GH ++AAR R
Sbjct: 72 LPQLL--HVNHGLQADSAIWAAHVANWAKAQKIPCTILQAH------VNGHDEQAARQAR 123
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y + + +Q VLL+AHHADDQAE ++RL + +GV GL+GM +
Sbjct: 124 YDVMRAQL--NQDDVLLLAHHADDQAETVLMRLIQGAGVNGLSGM-------HPWRVQTQ 174
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
D H I++ RP L + + + +++DPTN VR+ +R
Sbjct: 175 D---AHRIIVWRPWLIVQRASISSYAKRLKLPYIDDPTNDGGDNVRSGLR 221
>gi|399018071|ref|ZP_10720257.1| tRNA(Ile)-lysidine synthetase [Herbaspirillum sp. CF444]
gi|398102036|gb|EJL92228.1| tRNA(Ile)-lysidine synthetase [Herbaspirillum sp. CF444]
Length = 477
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 96/205 (46%), Gaps = 20/205 (9%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
IA+ SGG DS L L A + A E L A + HG+ +
Sbjct: 39 IAVAYSGGLDSSVLLHLAAAF----------AREQGVRLFAFHIHHGISVNADTWQAHCR 88
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ +G + R L K G ++EAAR RY ++C +H I +LL AHH DDQ
Sbjct: 89 QQCEQVGAVFD-TRNIALKDFDKSG-VEEAARIGRYHALGELCREHGIALLLTAHHQDDQ 146
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE +L+L R SGV G++GM A + + L N +LL RPLL+ S+ +
Sbjct: 147 AETILLQLLRGSGVAGMSGM--------DQANAAANLLGNDQLLLARPLLNASRATLEHY 198
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIR 289
+ +V+D +N +VRN +R
Sbjct: 199 AAAQSLSFVDDESNNDTRYVRNALR 223
>gi|258405590|ref|YP_003198332.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692]
gi|257797817|gb|ACV68754.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692]
Length = 338
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 113/273 (41%), Gaps = 46/273 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ L VSGG DS+AL A + ++ L +DHGLR ES +E V
Sbjct: 35 VMLAVSGGVDSVALLAWAAAMRD----------KWGARLFCAHLDHGLRPESSQERQRVH 84
Query: 145 HRVSDMGIRCEIVRCDWLDGRPK--------QGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
+ I C GR + Q ++EA R +RYR + + + LL
Sbjct: 85 ALCDQLAIPC-------FSGRSETRRYAQRCQLGIEEAGRLLRYRYLEGIAHRRGCDYLL 137
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AHHA+D AE ++R R +G LAGMA D + L+RP L
Sbjct: 138 TAHHANDLAEDSLMRFIRGTGWPALAGMA------------AWDPGRR----LLRPFLLT 181
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRS 316
K ++ + Q W ED +NR P + RNRIR + L + L+ + R+ ++
Sbjct: 182 PKHRLHALVQAAGLCWEEDSSNRDPAYQRNRIRHQILPLLIKENPNFLETIAQTWRQAQA 241
Query: 317 YVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK 349
+ + +T Q V+ +L P +
Sbjct: 242 D-----TAAFDTMLTAARQAERVVKQGLLAPRQ 269
>gi|90580988|ref|ZP_01236789.1| hypothetical cell cycle protein MesJ [Photobacterium angustum S14]
gi|90437866|gb|EAS63056.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14]
Length = 438
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 107/232 (46%), Gaps = 33/232 (14%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
L D+ Y AF R++ +A L R L SGG DS L L A + T QN E
Sbjct: 2 LKDIMLY-SAFCRQL-LAHLPASKRFVLAFSGGLDSRVLLDLMARFIT----QNPEYS-- 53
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
A+ V HGL + A+ GI C++ R L G + L++AAR+ R
Sbjct: 54 ---CHAVYVHHGLSSNADIWADKCVVWAKSAGISCDVERVKVLTG--NRISLEQAAREAR 108
Query: 180 YRLFQKVCIQH-QIG-VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
Y + QH +G +LL A H+DDQ E F+L L R SG GLA M + +A
Sbjct: 109 Y----NILAQHVNMGDMLLTAQHSDDQIETFLLALKRGSGPAGLAAMP----MILPFAKG 160
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
H +RPLL+ ++ D+ + WVED +N+ + RN IR
Sbjct: 161 MH----------LRPLLNITRADIEQYGLEHKLSWVEDESNQDERYDRNFIR 202
>gi|317497137|ref|ZP_07955463.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895547|gb|EFV17703.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 425
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYR 181
+ A+ ++H +R E+ ++ V + I C+I D + ++ L+EA R RY
Sbjct: 5 ITAVHINHMIRREAVDDQKFVQDLCGQLSIPCKIFEIDVKQIAKREKMSLEEAGRKARYD 64
Query: 182 LFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241
F K ++ + IAHH +DQAE F+ R+ R +G+ G M
Sbjct: 65 AFAKTMKKYNADKIAIAHHQNDQAETFLYRVVRGTGIYGAGAM----------------- 107
Query: 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ L+RPLL K+++ K + + WVED +N+ F RN+IR
Sbjct: 108 -REKDGNLIRPLLCVKKEEIVKYLKEAGQAWVEDASNQDDAFARNQIR 154
>gi|423071818|ref|ZP_17060591.1| hypothetical protein HMPREF9177_01908 [Streptococcus intermedius
F0413]
gi|355363592|gb|EHG11329.1| hypothetical protein HMPREF9177_01908 [Streptococcus intermedius
F0413]
Length = 425
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 101/223 (45%), Gaps = 38/223 (17%)
Query: 68 EAFSRRMAMAGLKPHHR-IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F + + G HHR I L +SGG DSM L W + + E I+ LA
Sbjct: 4 QRFFQLVQKKGYFKHHRKILLAISGGLDSMTLL----DW-LYKYRKKLE----IEICLA- 53
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
V+HGLREES E + +G+ + G ++ AR RY F+K+
Sbjct: 54 HVNHGLREESDFEEQELKKIAKKLGVN---IFTSSFSG----PFSEQKARAFRYSFFKKI 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ Q L+ AHHADDQAE +R+ R S + ++G+ Q F++
Sbjct: 107 MKEEQCTALVTAHHADDQAETIFMRILRGSRLFHISGIK-EKQRFANGE----------- 154
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL F K D I ED TN+ ++RNRIR
Sbjct: 155 --LIRPLLSFQKSDFPTIFH------FEDWTNQENHYLRNRIR 189
>gi|338176365|ref|YP_004653175.1| tRNA(Ile)-lysidine synthase [Parachlamydia acanthamoebae UV-7]
gi|336480723|emb|CCB87321.1| tRNA(Ile)-lysidine synthase [Parachlamydia acanthamoebae UV-7]
Length = 426
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 29/237 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEANIV 143
I +G+SGGPDS+AL L + + I L I +DH R+ES++EA +
Sbjct: 19 ILVGLSGGPDSIALLYLLL-----------KCAKMIPLKLGIAHIDHRWRQESEKEAETL 67
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + + LD G+L+ A RD+RY+ F +V + +++ HH DD
Sbjct: 68 KTLAESLHVPFHLKV---LDPTSMHGNLEAACRDLRYQFFAEVAAIYDYQAVVLGHHQDD 124
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE + R+ + ++ L G+A + Q + + RPLL+ K +
Sbjct: 125 QAETILKRILEGASLVKLRGIAETKQ--------------QGGLAIWRPLLEVDKAKILS 170
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEH 320
+ + D TN P F+R ++R + + F E+++ + + +EH
Sbjct: 171 WLSKHDIPFFNDSTNLDPKFLRGKMRSRMMPYLAKEFGKEIKSALLYLGKESEELEH 227
>gi|445496220|ref|ZP_21463264.1| tRNA(Ile)-lysidine synthase TilS [Janthinobacterium sp. HH01]
gi|444792381|gb|ELX13928.1| tRNA(Ile)-lysidine synthase TilS [Janthinobacterium sp. HH01]
Length = 470
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ +SGG DS AL L + +G A L A + HG+ +
Sbjct: 30 RMAVALSGGLDSSALLHLAHAYAQA----HGVA------LYAFHIHHGISANADAWLAHC 79
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +G+ E R D + K G + AAR +RY +C H + +LL AHH DD
Sbjct: 80 EQACAALGVTFEARRVQLAD-QQKSG-TEAAARKVRYAALGALCAAHGVPLLLTAHHLDD 137
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE +L+L R SG GL+GM A + + L N +++ RPLL S+ +
Sbjct: 138 QAETVLLQLLRGSGPAGLSGM--------DAANAAPELLANPGLVMARPLLPASRQQLSA 189
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR 289
++ D +N P F RN +R
Sbjct: 190 YVTEHGISYINDESNDDPRFARNALR 215
>gi|389748489|gb|EIM89666.1| hypothetical protein STEHIDRAFT_166023 [Stereum hirsutum FP-91666
SS1]
Length = 979
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 31/224 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+A+ SGG DS L L W F L+++ ++H L + A+ +
Sbjct: 32 RLAIANSGGVDSTCLLFL---WHRLLFESGPTDPSLPTSLISLHINHSL----QSSASTM 84
Query: 144 SHRVSDMGIRCEIVRCD----W----LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+ S + + I + W P H + +AR RY LF + ++ G +
Sbjct: 85 AKSASLLPLHLSIPHLELPILWGTRPFPNYPLSSHTERSARQARYHLFLEGMVRGGAGAI 144
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK---------NHS 246
+ HHADDQ E ++RLS+ S +LGLAGM S + DD
Sbjct: 145 CMGHHADDQVETALMRLSKGSTMLGLAGMR------SVRTWGMGDDKAWPLSWAGSMGMG 198
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIR 289
+ +VRPLL KD + C+ +W ED TN P L +RN +R
Sbjct: 199 LSIVRPLLSLPKDRIVATCEEEGLEWYEDQTNFQPSLTLRNVVR 242
>gi|392427900|ref|YP_006468911.1| MesJ/Ycf62 family protein [Streptococcus intermedius JTH08]
gi|419775857|ref|ZP_14301783.1| tRNA(Ile)-lysidine synthetase [Streptococcus intermedius SK54]
gi|383846477|gb|EID83873.1| tRNA(Ile)-lysidine synthetase [Streptococcus intermedius SK54]
gi|391757046|dbj|BAM22663.1| MesJ/Ycf62 family protein homolog [Streptococcus intermedius JTH08]
Length = 425
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 101/223 (45%), Gaps = 38/223 (17%)
Query: 68 EAFSRRMAMAGLKPHHR-IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI 126
+ F + + G HHR I L +SGG DSM L W + + E I+ LA
Sbjct: 4 QRFFQLVQKKGYFKHHRKILLAISGGLDSMTLL----DW-LYKYRKKLE----IEICLA- 53
Query: 127 TVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV 186
V+HGLREES E + +G+ + G ++ AR RY F+K+
Sbjct: 54 HVNHGLREESDFEEQELKKIAKKLGVN---IFTSSFSG----PFSEQKARAFRYSFFKKI 106
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ Q L+ AHHADDQAE +R+ R S + ++G+ Q F++
Sbjct: 107 MKEEQCTALVTAHHADDQAETIFMRILRGSRLFHISGIK-EKQRFANGE----------- 154
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL F K D I ED TN+ ++RNRIR
Sbjct: 155 --LIRPLLSFQKSDFPTIFH------FEDWTNQENHYLRNRIR 189
>gi|383786089|ref|YP_005470658.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium pennivorans DSM
9078]
gi|383108936|gb|AFG34539.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium pennivorans DSM
9078]
Length = 451
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 28/207 (13%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L VSGG DS+ + L K QN G T +H LR E+ EE V
Sbjct: 37 LAVSGGIDSITMLDLFYRLKKE--RQNLRIG-------VATFNHKLRPEADEEVEFVRAE 87
Query: 147 VSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
MG D R + ++EAAR++RYR ++V +H + AH+A+D
Sbjct: 88 SERMGFTFYTDSADVRSYSRQNKMSIEEAARNLRYRFLEQVMKEHHYELTATAHNANDLL 147
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E I+R ++ +G GLAG+ S + RP+L F++ ++
Sbjct: 148 ETMIMRFTKGTGPFGLAGLKIISNNY------------------FRPMLFFTRQEIELYA 189
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ N D+V D +N + RN IR S+
Sbjct: 190 KNRNLDYVVDMSNYDEHYQRNYIRHSI 216
>gi|395794788|ref|ZP_10474105.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. Ag1]
gi|395341057|gb|EJF72881.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. Ag1]
Length = 439
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRL 182
L AI V HGL+ + +G+ ++R G L+ AARD RY+
Sbjct: 51 LSAIHVHHGLQAAADAWPAHCQFVCDALGVPLRVIRVQVQPG----ASLERAARDARYQA 106
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
F +V ++ L+ H DDQAE + RL R +GV GLA M + Y
Sbjct: 107 FAEVIGAGEL--LVTGQHRDDQAETLLFRLLRGAGVRGLAAMPAQRPLADGY-------- 156
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
LVRPLLD S+ ++ + W+EDP+N P F RN +R + + +
Sbjct: 157 ------LVRPLLDVSRAELEAYAREHQLTWIEDPSNADPRFSRNYLRHHVFPQLTERWP- 209
Query: 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDL 342
QAV + R C+ ++EA ++D+ A +DL
Sbjct: 210 --QAVSTMAR---------CAEHLSEAHGLLDE-LAQMDL 237
>gi|365960270|ref|YP_004941837.1| tRNA(Ile)-lysidine synthase [Flavobacterium columnare ATCC 49512]
gi|365736951|gb|AEW86044.1| tRNA(Ile)-lysidine synthase [Flavobacterium columnare ATCC 49512]
Length = 435
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 47/273 (17%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLR-EESKEE 139
++ L VSGG DSM L L F L I + H LR +ES ++
Sbjct: 20 KLLLAVSGGIDSMILLNL-----------------FSKLNLQIAIAHCNFQLRGDESNKD 62
Query: 140 ANIVSHRVSDMGIRCEIVRCD-WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V + + I + + + +Q+AAR++RY F ++ LL A
Sbjct: 63 EEFVKFESQKLKVESFIKNFETQIYANDNKLSIQQAARELRYNWFYELLNTQGFDHLLTA 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DD E F++ +R +G+ GL G+ +D ++RPLL FS+
Sbjct: 123 HHLDDSLETFLINFTRGTGIEGLTGIP-----------QINDK-------IIRPLLIFSR 164
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRT 314
+++ K N W ED +N S + RN+IR L +L++ + S Q + ++T
Sbjct: 165 EEIEKYAAENNIQWREDASNASDKYFRNKIRHHVVPILKELNT-NLLSSFQNTLKNLKQT 223
Query: 315 RSYVEHVCSNLINE-AVTVMDQGY-AVIDLEIL 345
S H N + E A+ D Y V+ L+ L
Sbjct: 224 ESLASHSIYNKLEEIAIKKEDDIYFDVVKLQTL 256
>gi|86135031|ref|ZP_01053613.1| PP-loop family protein [Polaribacter sp. MED152]
gi|85821894|gb|EAQ43041.1| PP-loop family protein [Polaribacter sp. MED152]
Length = 436
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 20/120 (16%)
Query: 171 LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM-AFSSQ 229
+Q AR++RY FQ++ +HQ+ +L AHHADD E F++ L+R SG+ G G+ A +
Sbjct: 96 IQITARELRYNWFQELMDEHQLDYILTAHHADDNLETFLINLTRGSGLDGFTGIPAINGN 155
Query: 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
I VR LL FS+ ++ + N +W ED +N S +VRN+IR
Sbjct: 156 I-------------------VRTLLPFSRSEILNFAKSNNIEWREDASNASIKYVRNKIR 196
>gi|239637495|ref|ZP_04678469.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603]
gi|239596940|gb|EEQ79463.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603]
Length = 432
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 84/213 (39%), Gaps = 24/213 (11%)
Query: 77 AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
G I L VS G DSM L L E L I ++HGLR+ S
Sbjct: 6 TGWSEQDHIVLAVSTGIDSMCLLHLLLN----------EYQHTYSKLTCIHINHGLRQAS 55
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
EE + GI I R D + +Q +R RY F + Q VLL
Sbjct: 56 IEEEAFFKTYCEEHGIEYYIKRLDLSETVEAGNSIQNISRQYRYEWFDYIMKQLGASVLL 115
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AHH DDQ E RL G+A++SQ S LVRP+LD
Sbjct: 116 TAHHRDDQIETIFYRLFTGRFTRSHLGIAYTSQRV--------------SYQLVRPMLDI 161
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
SK + N + ED +N + ++VRN IR
Sbjct: 162 SKATIKSYQNQYNVPFFEDVSNHNNVYVRNDIR 194
>gi|313894633|ref|ZP_07828196.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str.
F0412]
gi|313440823|gb|EFR59252.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str.
F0412]
Length = 332
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLREESKEEA 140
H RI + SGGPDSMAL L Q+ A L I VDH +R ESK+E
Sbjct: 23 HSRILIACSGGPDSMALLHLL---------QDIAAHRHTKYKLGIAIVDHSIRPESKDEV 73
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE--AARDMRYRLFQKVCIQHQIGVLLIA 198
+ ++V +G+ D + K L E R +RY+ ++ + +A
Sbjct: 74 LWLRNQVDALGLSFYTTTFD-VPTLSKDLKLSEETVGRRVRYQWLNEIAQSEGYDYIAVA 132
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HH DDQAE + L R +G+ GL GMA S ++ I ++RPLLD +K
Sbjct: 133 HHKDDQAESILAHLIRGTGLNGLTGMAVVSN--------------DYDIPVIRPLLDVTK 178
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++ + D TN + RNRIR
Sbjct: 179 AELLAYLADRKLTYCIDSTNDDIRYQRNRIR 209
>gi|312898239|ref|ZP_07757630.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359]
gi|310620736|gb|EFQ04305.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359]
Length = 461
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 35/290 (12%)
Query: 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
+ D+ + E+F ++ + L + + VSGGPDS+AL + A + +
Sbjct: 2 MDDLIRKVESFCKKENL--LDRQDTVIVAVSGGPDSIALLHILAALQD----------RW 49
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDM 178
L+A V+HGLR + EE V + +G R D KQG ++ A R+
Sbjct: 50 SLHLVAAYVNHGLRAAAFEEEVFVESQARAVGAEFYCRRIDAAAIAEKQGLSIETAGRNE 109
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY F ++ + + + HH DDQAE ++ L R GV G M
Sbjct: 110 RYAFFSELAEKTGAVRIAVGHHEDDQAETVLMHLLRGGGVSGAGAM-------------- 155
Query: 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR---MSLGDL 295
K + L++RPLL + D+ N W D +N S ++RNRIR M L
Sbjct: 156 ----KAKNGLIIRPLLCVPRQDILTALNEVNLPWRVDESNESREYLRNRIRHDIMPLLKN 211
Query: 296 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 345
+ + L S R+ Y+E+ + A ++G+ +D+ IL
Sbjct: 212 INPQVTAALNRFASISRQENMYMENEAVKQLKLAERRNERGF-YLDIPIL 260
>gi|373453745|ref|ZP_09545632.1| tRNA(Ile)-lysidine synthetase [Eubacterium sp. 3_1_31]
gi|371963036|gb|EHO80608.1| tRNA(Ile)-lysidine synthetase [Eubacterium sp. 3_1_31]
Length = 406
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
++A L H +GVSGGPDSMAL + + L +++ RE
Sbjct: 3 SLANLSQQHVYVIGVSGGPDSMALLDMCRSYGLS--------------FLVAHMNYQKRE 48
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ + +V + I C + R +P +G+ Q AR RY + ++ ++
Sbjct: 49 SAFRDEELVVNYCQRYEIPCYVKR----QKKPCKGNFQAFARAERYHFYHELLEKYHGDA 104
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+L+AHH DD E +++++ R G G+ + Q + Y C ++RPLL
Sbjct: 105 ILLAHHLDDHLETYLMQMER-----GSKGVYYGIQE-ETVLYDCK---------VLRPLL 149
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
++K ++ C + D +N + + RNRIR S D S K EL A I+
Sbjct: 150 SYTKQELLAYCIEHQVPYGFDESNFTDDYTRNRIRHSYIDHMSRKEKEELAAEIA 204
>gi|295101533|emb|CBK99078.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
synthetase, C-terminal domain [Faecalibacterium
prausnitzii L2-6]
Length = 488
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 35/215 (16%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L +AL VSGG DSMAL L AGE L V+HGLR E+ +
Sbjct: 20 LDGKQHLALAVSGGADSMALLCLI----------RPLAGEKGIALTVCHVNHGLRGETAD 69
Query: 139 -EANIVSHRVSDMGIRCEIVRCDWLD---GRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ V + +G+ + L+ G+P+ G ++ AR +RY F++V + I
Sbjct: 70 RDEAFVREVCARLGLPLRVFHAAELEAEAGKPRAG--EDWARRLRYACFERV-LAEGIDA 126
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+ AH DQAE + RL+R +G+ G AG+ S + +RPLL
Sbjct: 127 VATAHTGSDQAETLLFRLARGTGLHGAAGIRPSRPGY------------------LRPLL 168
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++ D +C+ WV D TN + + RNR+R
Sbjct: 169 CLTRADTEAVCRACGEGWVTDETNDADDYARNRLR 203
>gi|254468050|ref|ZP_05081456.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13]
gi|207086860|gb|EDZ64143.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13]
Length = 441
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 100/214 (46%), Gaps = 38/214 (17%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
LK + + +GVSGG DS+ L L+ F+ L I VDH L ESK
Sbjct: 17 LKKNCHLLVGVSGGIDSVVLGHTLSQLRSLHPFD-----------LTFIYVDHQLHPESK 65
Query: 138 EEANIVSHRVSDMGIR--CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL 195
+ AN V + I CE V D +G AAR RY+ FQK HQ +L
Sbjct: 66 QWANTVKQLAKKLSIEYICEKVTIDQDLKLGTEG----AARKHRYQAFQK----HQKDIL 117
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
++A H DDQ E +L+L+R +G GL+ M H+ LK + RPLL
Sbjct: 118 VLAQHEDDQLETLLLQLARGAGSKGLSCMP-----------EYHEKLK-----IWRPLLG 161
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
SK+ +Y+ Q ++ED +N+ + RN +R
Sbjct: 162 VSKNLIYRYQQEHKLKFIEDSSNKDNKYDRNYLR 195
>gi|293399915|ref|ZP_06644061.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306315|gb|EFE47558.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 406
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
++A L H +GVSGGPDSMAL + + L +++ RE
Sbjct: 3 SLANLSQQHVYVIGVSGGPDSMALLDMCRSYGLS--------------FLVAHMNYQKRE 48
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ + +V + I C + R +P +G+ Q AR RY + ++ ++
Sbjct: 49 SAFRDEELVVNYCQRYEIPCYVKR----QKKPCKGNFQAFARAERYHFYHELLEKYHGDA 104
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+L+AHH DD E +++++ R G G+ + Q + Y C ++RPLL
Sbjct: 105 ILLAHHLDDHLETYLMQMER-----GSKGVYYGIQE-ETVLYDCK---------VLRPLL 149
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
++K ++ C + D +N + + RNRIR S D S K EL A I+
Sbjct: 150 SYTKQELLAYCIEHQVPYGFDESNFTDDYTRNRIRHSYIDHMSRKEKEELAAEIA 204
>gi|255282025|ref|ZP_05346580.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469]
gi|255267344|gb|EET60549.1| hypothetical protein BRYFOR_07366 [Marvinbryantia formatexigens DSM
14469]
Length = 471
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 140/306 (45%), Gaps = 49/306 (16%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFID 121
M KYR M AG K + GVSGG DS+ L VL K F+
Sbjct: 8 MEKYR------MIEAGDK----VIAGVSGGADSLCLLFVLMEYRKRVPFS---------- 47
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVR-CDWLDGRPKQGHLQEAARDMR 179
+LA+ V+HG+R +ES E+A V + I +V+ C R ++ ++EA R R
Sbjct: 48 -ILAVHVEHGVRGQESLEDAAFVEKICREHTIEYRLVQVCVPELARREKLSVEEAGRRAR 106
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y F+++ + + +AH+ DDQAE + +++R SG+ G G
Sbjct: 107 YEAFERIRQETGADKIAVAHNRDDQAETVLFQIARGSGLTGAGG---------------- 150
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDL 295
++ ++RPLL S+ ++ + +G ++ W D TN+ + RNRIR L +
Sbjct: 151 --IRPVRGAVIRPLLSCSRAEIEEYLRGHSQTWRTDATNQETDYARNRIRHQILPLLEEQ 208
Query: 296 SSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL--NPSKIEDI 353
+ + + + A+ +R ++Y+E + E + +G I + L PS +++
Sbjct: 209 INSAGREHIAALAEELQRVQAYMEQETQKCLEE-LADFGEGTVQITVSALKEKPSLLQEY 267
Query: 354 FLSKFL 359
L + L
Sbjct: 268 VLRESL 273
>gi|291613873|ref|YP_003524030.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1]
gi|291583985|gb|ADE11643.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1]
Length = 445
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 107/238 (44%), Gaps = 28/238 (11%)
Query: 76 MAGLKPHH-RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
A L P H I +G+SGG DS+ L L A F L A+ V HG+
Sbjct: 17 FAPLLPRHSHILVGLSGGMDSVVLLHLLHI----------LAPRFEWRLSALHVHHGISP 66
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGV 194
+ AN + + GI I R D R + G ++ AAR +R+ F + +
Sbjct: 67 NADAWANFCADLCARKGIPLHIERVDIAPLRDEHG-IEAAARKLRHAAFARQPCDY---- 121
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+ +AHHADDQAE +L+L R +GV G+A M H+ ++RPLL
Sbjct: 122 VALAHHADDQAETLLLQLLRGAGVKGVAAMPAVKSA------------TPHARAILRPLL 169
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACR 312
D S+D++ + Q WVED +N + RN +R L L F + +I + +
Sbjct: 170 DVSRDELSEYAQQQGLRWVEDESNADDAYPRNFLRHRLLPLLEQRFPAYRDTLIRSAQ 227
>gi|334140184|ref|YP_004533385.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium sp.
PP1Y]
gi|333938209|emb|CCA91567.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium sp.
PP1Y]
Length = 292
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 99/206 (48%), Gaps = 30/206 (14%)
Query: 89 VSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148
+SGGPDS AL +L A G A TVDHGLR ES +EA V+ +
Sbjct: 1 MSGGPDSTALLLLAAAALPGRVG-------------AATVDHGLRPESAQEAADVAALCA 47
Query: 149 DMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208
+G+ E +R + G++Q AR RY + Q+ L AHHADDQAE
Sbjct: 48 RLGVPHETLRVE-----VAPGNVQAEARSARYAALARWIEARQLAALATAHHADDQAETL 102
Query: 209 ILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGG 268
++RL+R SGV GLAG Q+ S I L+RP+L + + ++ ++
Sbjct: 103 LMRLNRASGVAGLAGTRGRGQVPDS------------DIPLLRPVLGWRRSELAEVVAEA 150
Query: 269 NRDWVEDPTNRSPLFVRNRIRMSLGD 294
+DP+N + R R+R +L D
Sbjct: 151 GIPAAQDPSNADDKYDRVRVRKALAD 176
>gi|376295268|ref|YP_005166498.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans ND132]
gi|323457829|gb|EGB13694.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans ND132]
Length = 336
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 129/312 (41%), Gaps = 48/312 (15%)
Query: 27 LSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYL-TDMTKYREAFSRRMAMAGLKPHHRI 85
++++ IP T LP FC + E L D+T R+
Sbjct: 1 MAALPADIPPTLQDLLPKWAHFCLYAGRFVEEELGIDLTG-----------------RRV 43
Query: 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145
+G+SGG DS AL ++ + +F G A+ +DH LR ES ++A
Sbjct: 44 LVGLSGGVDSTALLLV--------LHYLSSRADFTVG--AVHLDHQLRPESADDATFARA 93
Query: 146 RVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+GI CE+ D ++G L+EA R+ RY L+ ++ + + H DD
Sbjct: 94 LCERLGIDCEVETRDVARLAEERGVGLEEAGREARYALYAELRESGGWDFIALGHQLDDL 153
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
+E ++RL R +G GL+GMA HD + L+RPLL K +
Sbjct: 154 SEDVLMRLIRGTGWPGLSGMA------------GHDPARG----LIRPLLLIPKSTLKAF 197
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHV-CS 323
W ED +N P RNR+R + L + Q+V R R VE +
Sbjct: 198 VTHLGVPWREDASNADPAMTRNRVRNEILPLIEKENPAFWQSVARLWRLGR--VEQAFWA 255
Query: 324 NLINEAVTVMDQ 335
L +EA ++D
Sbjct: 256 VLESEACEILDN 267
>gi|89900146|ref|YP_522617.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodoferax
ferrireducens T118]
gi|89344883|gb|ABD69086.1| tRNA(Ile)-lysidine synthetase-like [Rhodoferax ferrireducens T118]
Length = 320
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 95/223 (42%), Gaps = 35/223 (15%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AMA P +A+ SGG DS AL + A G + AI + HG++
Sbjct: 8 AMAAFTPTLPLAVAFSGGADSTALLLACAEKWPGQVH-------------AIHIHHGVQA 54
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCI----Q 189
+ +G+ + R +D R G E AAR RY+ F+ V + Q
Sbjct: 55 AGDDFERHCQAVCVRLGLPLVVKR---VDARHASGQSPEDAARRARYKAFEAVALVEYAQ 111
Query: 190 HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILL 249
I + +A HADDQ E +L LSR +G+ G++ M S + +
Sbjct: 112 VAIKSIALAQHADDQVETLLLALSRGAGLPGMSAMPAS--------------WRRAGLTY 157
Query: 250 VRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RPLL + D+ + G W+EDPTN F RNRIR L
Sbjct: 158 HRPLLGVAASDIRRWLVGRGVAWIEDPTNVDEQFTRNRIRARL 200
>gi|295694779|ref|YP_003588017.1| tRNA(Ile)-lysidine synthetase [Kyrpidia tusciae DSM 2912]
gi|295410381|gb|ADG04873.1| tRNA(Ile)-lysidine synthetase [Kyrpidia tusciae DSM 2912]
Length = 497
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 32/296 (10%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTG--GFNQNGEAGEFIDGLLAITVDHGLREES 136
L P HR+ L VSGG DSM L G +G GF+ ++ VDH +R ES
Sbjct: 15 LPPLHRVVLAVSGGVDSMVAMDLI-GQLSGALGFS-----------VVVCHVDHRMRPES 62
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRLFQKVCIQHQIGV 194
+E V G+ + V D + GR ++ Q AAR +RY + +
Sbjct: 63 GDEQRFVEAEAVRRGLAFQGVAVD-VPGRIRKTGESPQAAARALRYEALTQCAREAGAEA 121
Query: 195 LLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLL 254
+++AHH DDQAE +LRL R + GL GM ++ + + +RP L
Sbjct: 122 VILAHHQDDQAETVLLRLLRGTSPAGLGGM--------------NEVRRWGDLWWLRPFL 167
Query: 255 DFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT 314
K ++ + EDP+N S ++RN+IR+ L L ++ +++ ++ +
Sbjct: 168 KVPKAELVAYATDHGIPYREDPSNWSTKYLRNKIRLQLIPLLEREYQPQIKNHLARLAQM 227
Query: 315 RSYVEHVCSNLINEAVT-VMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQR 369
E V + + EA + G ++I S + + L L+L + +R
Sbjct: 228 IQEDEAVLTPMALEARDRCVRGGSGNYRIDIPRFSDLPAALQRRVLTLILDYPSER 283
>gi|238751432|ref|ZP_04612924.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380]
gi|238710299|gb|EEQ02525.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380]
Length = 456
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 99/219 (45%), Gaps = 31/219 (14%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL--AITVDHGLR 133
A L H + +G SGG DS L L + +FI L+ AI + HGL
Sbjct: 16 FAQLGGHRHVLVGFSGGLDSSVLLHLLVCLRD----------QFIPELMIRAIHIHHGLN 65
Query: 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIG 193
+ + G+ E+VR +D R ++ AAR+ RY+ F ++
Sbjct: 66 PRADSWVKHCQQQCEQWGVALEVVRVT-IDTR--DSGIEAAARNARYQAFASHLATNE-- 120
Query: 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPL 253
VLL A H DDQ E F+L L R SG GL+ MA +A+S L+RPL
Sbjct: 121 VLLTAQHLDDQCETFLLALKRGSGPAGLSAMAAK----RPFAHSQ----------LLRPL 166
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L FS++ + + W+ED +N+ F RN +R+ +
Sbjct: 167 LAFSRETLENYARAQQLQWIEDDSNQDDRFDRNFLRLRI 205
>gi|257888633|ref|ZP_05668286.1| PP-loop family protein [Enterococcus faecium 1,141,733]
gi|293378830|ref|ZP_06624985.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1]
gi|431043722|ref|ZP_19493012.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1590]
gi|431763494|ref|ZP_19552044.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E3548]
gi|257824687|gb|EEV51619.1| PP-loop family protein [Enterococcus faecium 1,141,733]
gi|292642371|gb|EFF60526.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1]
gi|430561310|gb|ELB00580.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E1590]
gi|430622267|gb|ELB59004.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E3548]
Length = 484
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI VSGG DSM L +L + GF+ L + ++H LREES EEA
Sbjct: 35 RILAAVSGGVDSMVLLHLLLQAQRQIGFS-----------LGVVHINHQLREESAEEAAY 83
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + + W + P + ++ AAR+ RY+ F +V + Q L+ AHH D
Sbjct: 84 LRSYCEKKNLPLYV--SVWEN--PAKTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGD 139
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++++ R + +G+ Q F++ LVRPLL FSK+++Y
Sbjct: 140 DQIETVLMKIIRGGQLSTFSGIK-GVQPFATGR-------------LVRPLLSFSKEELY 185
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ED TN+ RNR+R
Sbjct: 186 AYAAESQLVYFEDQTNQLLDVQRNRLR 212
>gi|254454426|ref|ZP_05067863.1| tRNA(Ile)-lysidine synthetase [Octadecabacter arcticus 238]
gi|198268832|gb|EDY93102.1| tRNA(Ile)-lysidine synthetase [Octadecabacter arcticus 238]
Length = 412
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 115/254 (45%), Gaps = 40/254 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG--LLAITVDHGLREESKEEANI 142
+ L VSGG DS AL L AG ID L ITVDHGLR + E A +
Sbjct: 10 VVLAVSGGSDSTALMHLAAG--------------SIDRARLHVITVDHGLRGVADEVA-L 54
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVL-LIAHHA 201
V+ + D+ ++ ++ W DG QG+LQ AAR R+ + V + H
Sbjct: 55 VAAQSEDLALKHSVLNWQW-DG---QGNLQAAARIGRWAAIAQWAADQPADVCCMTGHTH 110
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQAE ++RL+R SGV GLAGM + + + RPLL ++ D+
Sbjct: 111 DDQAETVLMRLARGSGVAGLAGMQSVGATPT-------------GLRICRPLLQETRADL 157
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRM---SLGDLSSCSFK-SELQAVISACRRTRS- 316
W +DP+N F R + R +LG+L S + + A + A RR +
Sbjct: 158 RAWLSEHGVTWSDDPSNDDLRFDRVKARGMQDALGELGLTSDRLVQTAAHMQAARREMTD 217
Query: 317 YVEHVCSNLINEAV 330
Y + + I ++V
Sbjct: 218 YAAMIAQSHITQSV 231
>gi|417916923|ref|ZP_12560489.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis bv. 2 str. SK95]
gi|342827670|gb|EGU62052.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis bv. 2 str. SK95]
Length = 425
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 96/212 (45%), Gaps = 39/212 (18%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
K H +I L +SGG DSM L L + ++ E G I+ +LA V+H R ES
Sbjct: 16 FKKHSKIVLALSGGLDSMFLFHLLSTYQK-------ELG--IEVILA-HVNHKQRSESDW 65
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA-ARDMRYRLFQKVCIQHQIGVLLI 197
E N + G+ I G EA AR+ RY F+K+ + L+
Sbjct: 66 EENELRKLADVAGLPIYITSFS--------GDFSEARAREFRYDFFRKIMKEVGATALVT 117
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHHADDQ E ++RL R S + L G+ S + DD++ ++RPLL F
Sbjct: 118 AHHADDQVETILMRLIRGSRLRHLTGIKESQVV---------DDIE-----IIRPLLHFH 163
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
K D I ED +NR + RNRIR
Sbjct: 164 KKDFLPIFH------FEDQSNRENAYFRNRIR 189
>gi|297620920|ref|YP_003709057.1| tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU 86-1044]
gi|297376221|gb|ADI38051.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU
86-1044]
Length = 438
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 115/268 (42%), Gaps = 29/268 (10%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ + SGGPDSMAL + ++ + G A VDH R+ES +EA +
Sbjct: 22 VLIACSGGPDSMALLRMMVEYRKTHSVRFGVA----------HVDHRWRKESADEAETLR 71
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
++ + + +D QG+L+EA R R F ++C H G +++ HH DDQ
Sbjct: 72 ALCREIDVPFHLKE---IDPEAMQGNLEEACRHFRQTYFLQLCFDHGYGSVMLGHHLDDQ 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE + R+ + + GM Q S Y +I RP L K +
Sbjct: 129 AETVLKRVFEGAKLEKCGGM----QEISVY----------ETIPFWRPFLQVRKQKLIAW 174
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSN 324
N + DPTN F+R++IR ++ S F E+ ++ R ++ +
Sbjct: 175 LNLRNFPYFIDPTNNDSSFLRSKIRGNILPEISRYFGKEVSPGLAFLGREAHALKEFMGS 234
Query: 325 LINEAVTVMDQGY--AVIDLEILNPSKI 350
I + + + ++ V+DL NPS +
Sbjct: 235 HIYKWLALKEKTPWGTVLDLSCQNPSHL 262
>gi|383450608|ref|YP_005357329.1| tRNA(Ile)-lysidine synthase [Flavobacterium indicum GPTSA100-9]
gi|380502230|emb|CCG53272.1| tRNA(Ile)-lysidine synthase [Flavobacterium indicum GPTSA100-9]
Length = 435
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 118/280 (42%), Gaps = 52/280 (18%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGL-LAITVDH---GLR-EESKE 138
+ + VSGG DSM L L +D + L I+V H LR EESKE
Sbjct: 20 NLLIAVSGGVDSMVLLHL------------------LDKINLNISVAHCNFQLRAEESKE 61
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
E N V + I + R + + +Q AAR++RY F V ++ LL
Sbjct: 62 EENFVKTYCEEHQIHLFVKRFATKEYAIQNKLSIQLAARELRYDWFNLVMKENNFDFLLT 121
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
HH DDQ E F++ +R +G+ GL G+ A ++ I +R LL F
Sbjct: 122 GHHLDDQVETFLINFTRGTGIEGLTGIPAINNNI-------------------IRVLLPF 162
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACR 312
S++ + N W ED +N S + RN+IR L +L+ +F + + +
Sbjct: 163 SREAILNYATENNLQWKEDSSNASDKYFRNKIRHQVIPVLKELNP-NFLESFKNTLIHLK 221
Query: 313 RTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIED 352
T V +N+ + V D + +I SKI D
Sbjct: 222 TTEQIVNKYSIETLNKLIQVKDNKEFI---KISELSKIND 258
>gi|431753378|ref|ZP_19542052.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E2620]
gi|430612285|gb|ELB49336.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E2620]
Length = 484
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 30/207 (14%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI VSGG DSM L +L + GF+ L + ++H LREES EEA
Sbjct: 35 RILAAVSGGVDSMVLLHLLLQAQRQIGFS-----------LGVVHINHQLREESAEEAAY 83
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + + + P + ++ AAR+ RY+ F +V + Q L+ AHH D
Sbjct: 84 LRSYCEKKNLLLYVSVWE----NPAKTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGD 139
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++++ R + +G+ Q F++ LVRPLL FSK+++Y
Sbjct: 140 DQIETVLMKIIRGGQLSTFSGIK-GVQPFATGR-------------LVRPLLSFSKEELY 185
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ED TN+ RNR+R
Sbjct: 186 AYAAESQLVYFEDQTNQLLDVQRNRLR 212
>gi|125716899|ref|YP_001034032.1| PP family ATPase [Streptococcus sanguinis SK36]
gi|166988067|sp|A3CJX7.1|TILS_STRSV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|125496816|gb|ABN43482.1| Cell cycle control ATPase, PP-loop superfamily, putative
[Streptococcus sanguinis SK36]
Length = 425
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 122/275 (44%), Gaps = 45/275 (16%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQEKKYFQDHRKVLIAVSGGLDSMTLLQLLI------VSQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
KV + L+ AHHADDQAE +RL R + + L+GM + ++C +
Sbjct: 104 GKVMQEGHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQPFACGE--- 154
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSF 300
L+RPLL F K D I ED +N ++RNRIR + L DL + F
Sbjct: 155 -----LIRPLLTFHKSDFPDIQH------FEDSSNFQNDYLRNRIRNLYLPDLEKENPQF 203
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
K L+ + ++ + H+ +L E V V Q
Sbjct: 204 KDSLRYLGKEIEDWQTALSHLTRDLDIENVQVFHQ 238
>gi|358465156|ref|ZP_09175107.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 058
str. F0407]
gi|357065914|gb|EHI76084.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 058
str. F0407]
Length = 425
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 92/212 (43%), Gaps = 39/212 (18%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
K H ++ L +SGG DSM L L + + QN E L+ V+H R ES
Sbjct: 16 FKKHSKVVLALSGGLDSMFLFHLLSTY------QNELGIE----LILTHVNHKQRSESDW 65
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA-ARDMRYRLFQKVCIQHQIGVLLI 197
E N + G+ I G EA AR+ RY F+K+ + LL
Sbjct: 66 EENELRKLADVAGLPIYITSFS--------GEFSEACAREFRYDFFRKIMKEVGATALLT 117
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHHADDQ E ++R R S + L G+ S + DD++ ++RPLL F
Sbjct: 118 AHHADDQVETILMRFIRGSRLRHLTGIKESQVV---------DDIE-----IIRPLLHFH 163
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
K D I ED TNR + RNRIR
Sbjct: 164 KKDFLPIFH------FEDQTNRENSYFRNRIR 189
>gi|395769468|ref|ZP_10449983.1| tRNA(Ile)-lysidine synthase [Streptomyces acidiscabies 84-104]
Length = 335
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 40/206 (19%)
Query: 90 SGGPDSMALCVLTA------GWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
SGG DSMAL + G + GG +TVDHGL+ S + A+ V
Sbjct: 41 SGGADSMALASALSFEAPRLGLRAGG----------------VTVDHGLQTGSADRAHEV 84
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
R+ ++G+ + GR +G + AARD RY ++H +L+ H DD
Sbjct: 85 VQRLRELGLD-PVESAAVTVGR--EGGPEAAARDARYSALDDAAVRHGATAVLLGHTRDD 141
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
QAE +L L+R SG+ L+GMA S Y RP L + K
Sbjct: 142 QAETVLLGLARGSGIRSLSGMAAVSGAGGRYR---------------RPFLQLDRQTARK 186
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR 289
C + +DP N P + R+R+R
Sbjct: 187 ACMVQSLPVWDDPHNADPAYTRSRLR 212
>gi|253681327|ref|ZP_04862125.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873]
gi|253562565|gb|EES92016.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873]
Length = 462
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 31/229 (13%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ + VSGGPDS +C+L +K + ++A ++H LR EE+ ++
Sbjct: 20 KVVVAVSGGPDS--ICLLHILYKL--------REKIGISIVAAHINHCLRGEEADKDEEY 69
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++ I+C + + D +G + A R++RY F +V + + +AH+A
Sbjct: 70 VRKFCENLNIQCFVKKEDVHKISKDRGISCEMAGREVRYDFFSEVLNNVRANKIAVAHNA 129
Query: 202 DDQAELFILRLSRNSGVLGLAGM-AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+DQAE ++R+ R +G+ GL G+ A IF VRP++D ++D+
Sbjct: 130 NDQAETILMRMLRGTGLEGLIGIRAVRDNIF------------------VRPIIDITRDE 171
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS 309
+ C N + D TN ++ RN+IR+ L +F S++ V++
Sbjct: 172 IEDYCYVNNLNPRIDKTNLENIYTRNKIRLELIPYIQKNFNSDVIEVLN 220
>gi|227552665|ref|ZP_03982714.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330]
gi|257897412|ref|ZP_05677065.1| PP-loop family protein [Enterococcus faecium Com12]
gi|424762097|ref|ZP_18189623.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1337RF]
gi|227178194|gb|EEI59166.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330]
gi|257833977|gb|EEV60398.1| PP-loop family protein [Enterococcus faecium Com12]
gi|402425825|gb|EJV57970.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX1337RF]
Length = 481
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 30/207 (14%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI VSGG DSM L +L + GF+ L + ++H LREES EEA
Sbjct: 32 RILAAVSGGVDSMVLLHLLLQAQRQIGFS-----------LGVVHINHQLREESAEEAAY 80
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + + + P + ++ AAR+ RY+ F +V + Q L+ AHH D
Sbjct: 81 LRSYCEKKNLPLYVSVWE----NPAKTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGD 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++++ R + +G+ Q F++ LVRPLL FSK+++Y
Sbjct: 137 DQIETVLMKIIRGGQLSTFSGIK-GVQPFATGR-------------LVRPLLSFSKEELY 182
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ED TN+ RNR+R
Sbjct: 183 AYAAESQLVYFEDQTNQLLDVQRNRLR 209
>gi|381191007|ref|ZP_09898519.1| tRNA(Ile)-lysidine synthase [Thermus sp. RL]
gi|380451096|gb|EIA38708.1| tRNA(Ile)-lysidine synthase [Thermus sp. RL]
Length = 507
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 108/251 (43%), Gaps = 49/251 (19%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
D+ +RE SR L P + L VSGG DS+AL L EAG
Sbjct: 2 DVPAFRERLSR------LAPKDPLVLAVSGGGDSVALAHLVK-----------EAGR--- 41
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGI-----RCEIVRCDWLDGRPKQGHLQEAAR 176
+ +DHGLR ES + V +G R E+ R G +L+ AR
Sbjct: 42 QAVVAHLDHGLRPESPLDQAFVQALAERLGFPFFTERVEVARIAQARGE----NLEAVAR 97
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
++RY +V + + +L AH DDQAE +L+L L G A ++ I
Sbjct: 98 EVRYAFLHRVAREVRARAILTAHTLDDQAETVLLQL--------LQGTARATGI------ 143
Query: 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 296
+ L+VRPLL +++++ + W EDPTN+ P RN +R+ + L
Sbjct: 144 ------REREGLVVRPLLVHTREELRAYLRARGETWREDPTNQDPALDRNFLRLFVFPLL 197
Query: 297 SCSFKSELQAV 307
F + +A+
Sbjct: 198 EERFPAAKRAL 208
>gi|352518625|ref|YP_004887942.1| tRNA(Ile)-lysidine synthase [Tetragenococcus halophilus NBRC 12172]
gi|348602732|dbj|BAK95778.1| tRNA(Ile)-lysidine synthase [Tetragenococcus halophilus NBRC 12172]
Length = 474
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 99/228 (43%), Gaps = 29/228 (12%)
Query: 79 LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
LK + RI + VS G DSM L +L K F + V+H LR+ S
Sbjct: 16 LKANERILVAVSTGVDSMVLLHILERLQKKSDFT-----------IGVAHVNHKLRKASD 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
EE + + R + W P G ++E AR RY F+++ + VL
Sbjct: 65 EEESFL--RTYCQKHQLLFYTTSWKHS-PTSG-MEEKARAFRYNFFREIMDDYHYQVLAT 120
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHH+DDQ E I+++ R+ + G+ ++Q F S L+RPLL S
Sbjct: 121 AHHSDDQMETMIMKMVRDGNLFSAKGI-LANQSFGK------------SQALIRPLLHIS 167
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQ 305
K+++ Q D+ ED TN S RNRIR + L K LQ
Sbjct: 168 KEEILNYSQQEGIDYFEDQTNTSFDMQRNRIRHQVIPLLKKENKQTLQ 215
>gi|395648150|ref|ZP_10436000.1| tRNA(Ile)-lysidine synthetase [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 443
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 130/322 (40%), Gaps = 65/322 (20%)
Query: 56 AVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE 115
+ ++L + +R A + +A SGG DS L L A N
Sbjct: 6 SAKFLQTLAPWRNAPAWHIAF-------------SGGLDSTVLLHLLA---------NLA 43
Query: 116 AGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR----CEIVRCDWLDGRPKQGHL 171
E + L A+ V HGL+ + +G+ C VR L
Sbjct: 44 KTETLPTLSAVHVHHGLQAAADAWPGHCQSVCDALGVPLRVMCVQVRAG--------ASL 95
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
+ AARD RY+ F V + VLLI H DDQAE + RL R +GV GLA M +
Sbjct: 96 ERAARDARYQAFSDVVGAGE--VLLIGQHRDDQAETLLFRLLRGAGVQGLAAMPMQRALA 153
Query: 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS 291
S + L+RPLL S+ + + WVEDP+N P F RN +R
Sbjct: 154 SGH--------------LLRPLLGSSRAQLQAYAEEHQLTWVEDPSNADPRFSRNYLRHR 199
Query: 292 LGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL-NPSKI 350
+ + + QAV S R EH ++EA ++D+ A +DL+ PS +
Sbjct: 200 VFPRLTERWP---QAVASLAR----AAEH-----LSEAQGLLDE-LACLDLQTAEQPSPV 246
Query: 351 EDIFLSKF-LALVLQFICQRQR 371
+ L LA + RQR
Sbjct: 247 PWLPLPSLALAPLCALSDARQR 268
>gi|386359952|ref|YP_006058197.1| tRNA(Ile)-lysidine synthetase [Thermus thermophilus JL-18]
gi|383508979|gb|AFH38411.1| tRNA(Ile)-lysidine synthetase [Thermus thermophilus JL-18]
Length = 507
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 49/251 (19%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
D+ +RE SR L P + L VSGG DS+AL +L EAG
Sbjct: 2 DVPAFRERLSR------LAPKDPLVLAVSGGGDSVALALLVK-----------EAGR--- 41
Query: 122 GLLAITVDHGLREESKEEANIVSHRVSDMGI-----RCEIVRCDWLDGRPKQGHLQEAAR 176
+ +DHGLR ES + V +G R E+ R G +L+ AR
Sbjct: 42 QAVVAHLDHGLRPESPLDQAFVRALAERLGFPFFTERVEVARIAQARGE----NLEAVAR 97
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236
++RY +V + +L AH DDQAE +L+L L G A ++ I
Sbjct: 98 EVRYAFLHRVAREVGARAILTAHTLDDQAETVLLQL--------LQGTARATGI------ 143
Query: 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS 296
+ ++VRPLL +++++ + W EDPTN+ P RN +R+ + L
Sbjct: 144 ------REREGIVVRPLLAHTREELRAYLRARGEAWREDPTNQDPALDRNFLRLFVFPLL 197
Query: 297 SCSFKSELQAV 307
F + +A+
Sbjct: 198 EERFPAAKRAL 208
>gi|395767761|ref|ZP_10448293.1| tRNA(Ile)-lysidine synthase [Bartonella doshiae NCTC 12862]
gi|395413568|gb|EJF80031.1| tRNA(Ile)-lysidine synthase [Bartonella doshiae NCTC 12862]
Length = 477
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 123/281 (43%), Gaps = 38/281 (13%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ L VSGG DS+AL L + + F ++ +TVDH LR ES EA
Sbjct: 19 QKLILAVSGGGDSLALLFLV--------QDHLKTLSFPPEMIVVTVDHQLRPESAREAEN 70
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
V+ I+ IVR W +PK H+ E AR RY L + + +++ H +
Sbjct: 71 VAEICRAHHIKHIIVR--WKGKKPK-THIAEKARIARYDLLFEEAQKQNATLIMTGHTLN 127
Query: 203 DQAELFILRLSR----------NSGVLGLAGMAF-----------SSQIFSSYAYSC--H 239
DQ E + +R R +S ++ + F ++ + + SC
Sbjct: 128 DQIETYQMRYQRLQKDMDVFLQDSSLVTMREEIFRKDEGAESAKKNTGLLYARGLSCIPR 187
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCS 299
+ L + S+ L+RPLL ++ + + + W+EDPTN F R R+R SL +
Sbjct: 188 EALLHRSVRLIRPLLGVKRETLRAYLRLKGKTWIEDPTNEDLNFERVRVRQSLHPQQFIT 247
Query: 300 FKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVI 340
F ++ V A + R + + ++LI +++ G I
Sbjct: 248 F---VKKVHEAALKRREQAQKI-ADLILALDIIVEHGRCFI 284
>gi|374294610|ref|YP_005044801.1| tRNA(Ile)-lysidine synthetase [Clostridium clariflavum DSM 19732]
gi|359824104|gb|AEV66877.1| tRNA(Ile)-lysidine synthetase [Clostridium clariflavum DSM 19732]
Length = 468
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 34/222 (15%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIV 143
I +GVSGGPDS +C+L W + L+A+ ++H LR +ES + V
Sbjct: 21 IVVGVSGGPDS--ICLLHVLWSL--------RNDLNLKLVAVHINHMLRGDESYRDEEFV 70
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+G+ + +R D ++G L+EA R+ RYR F+ V + +AH+ +
Sbjct: 71 KSFCKKLGVELKSIRVDINKAARQKGMSLEEAGREERYRNFEMVADSIGADKIAVAHNKN 130
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE ++ + R +G+ GL GM + +VRPLLD + ++
Sbjct: 131 DQAETVLMNIIRGTGLDGLKGMDYIRG------------------RIVRPLLDIERSEIE 172
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRM----SLGDLSSCSF 300
+ V D +N ++ RN+IR+ S+ +L CS
Sbjct: 173 AYILEKKLETVIDSSNLEKIYARNKIRLDVIPSIDNLFDCSL 214
>gi|300724776|ref|YP_003714101.1| TilS, tRNA (Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC
19061]
gi|297631318|emb|CBJ92013.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC
19061]
Length = 443
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 27/228 (11%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
+ +I LG SGG DS L L T +++ L AI + HGL ++
Sbjct: 19 YKKILLGFSGGLDSTVLLHLL----TRLRDEHLHTDRAPIALRAIHIHHGLNAKADLWVE 74
Query: 142 IVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
+D + R E VR D +Q ++ AAR+ RY+ FQ++ +I L+ A
Sbjct: 75 HCRQMCADWKVDFRTEKVRLD-----IRQNGIEAAAREARYQSFQQMLQPDEI--LITAQ 127
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
H DDQAE F+L L R SG GL+ M S FS L+RPLL+ S+
Sbjct: 128 HLDDQAETFLLALKRGSGPAGLSSMP-SRMPFSGTT-------------LIRPLLNVSRA 173
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAV 307
++ +G +W+ED +N+ + RN +R+ + L + + QAV
Sbjct: 174 ELEVYARGKELEWIEDDSNQDDRYDRNFLRLRIMPLLNQRWPHFPQAV 221
>gi|406668964|ref|ZP_11076253.1| tRNA(Ile)-lysidine synthetase [Facklamia ignava CCUG 37419]
gi|405584861|gb|EKB58727.1| tRNA(Ile)-lysidine synthetase [Facklamia ignava CCUG 37419]
Length = 485
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 17/210 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI L +SGG DSM L L NQ + + +A +H LRE+S +A+++
Sbjct: 22 RIVLAISGGVDSMVLLYLMIE-----VNQRLPEDQRKEFFIA-HFNHHLREDSDLDADLI 75
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ + +W +P + ++ AR+ RY V ++ HH++D
Sbjct: 76 RKVAKEYNLPYFF--GEW--SQPAERDVESQARNARYAFLGDVVKMTDSDTVMTGHHSND 131
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNH-SILLVRPLLDFSKDDMY 262
AE I+RL R + + GL G I S Y +D+L+ + LVRPL+ + KD +Y
Sbjct: 132 LAETMIMRLIRGTSLRGLGG------IRSEYHRVLNDNLEGGVRVQLVRPLIFWPKDTLY 185
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + ED TN FVRNRIR +
Sbjct: 186 QYAHQHQIPYREDYTNLDDHFVRNRIRQRI 215
>gi|304321216|ref|YP_003854859.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis
HTCC2503]
gi|303300118|gb|ADM09717.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis
HTCC2503]
Length = 393
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQ---GHLQEAARDMRYRLFQKVCI 188
+R S+EEA++V+ G+R + W P + G L AAR RY+L + C
Sbjct: 1 MRPSSREEADLVAAWCRARGLRHTTL--TWARSDPARKGGGTLTAAARQARYKLLCQACE 58
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
QH + + AH ADDQAE +RL R G G+AGM I + +I
Sbjct: 59 QHGLDRVATAHTADDQAETVFMRLRRGGGQ-GMAGMPRERLIAAG---------PGPAIR 108
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL 295
L+RPLL + + + + +V+DP+N P + R R+R LG L
Sbjct: 109 LLRPLLGVRRARLRAYAKTHDLPFVDDPSNADPRYERVRVRALLGAL 155
>gi|291320748|ref|YP_003516013.1| hypothetical protein MAGa8640 [Mycoplasma agalactiae]
gi|290753084|emb|CBH41060.1| Conserved hypothetical protein [Mycoplasma agalactiae]
Length = 286
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 38/217 (17%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I LGVSGGPDSM L L + ++ ++ TV++ +R +S +A IV
Sbjct: 2 ILLGVSGGPDSMYLLDLISSQRSD--------------IVVATVNYNVRHDSAYDAEIVR 47
Query: 145 HRVSDMGIRCEIVRCDWLDGRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
D I I C +D + + +G+ ++ AR+ R+ F+K+ ++ L +AHH DD
Sbjct: 48 KFCEDKDI---IFECLEIDQKARFKGNFEKWAREQRFSFFKKIYEKYNCETLYLAHHKDD 104
Query: 204 QAELFILRL--SRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD-FSKDD 260
E + ++ R G+ +Y Y +VRPL+D K++
Sbjct: 105 FLESYFMQKESKRQPDFFGIKT--------ENYIYGMK---------VVRPLVDKVFKNE 147
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
+ + + D TN P++ RNRIR+ L LS+
Sbjct: 148 ILEALHNKKIKYANDYTNDLPIYTRNRIRIWLKSLSN 184
>gi|229917403|ref|YP_002886049.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
gi|229468832|gb|ACQ70604.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
Length = 408
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 39/211 (18%)
Query: 84 RIALGVSGGPDSMALC--VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
++ + VSGG DS+ L ++ GW G V HGLRE S EE
Sbjct: 3 KVLVAVSGGVDSIVLLDRLVKQGWDVG----------------VAHVHHGLREASDEEYT 46
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V+H + + R + +G Q H ++A RY F+ V +H L AHHA
Sbjct: 47 FVAHVAASYQVAFHGTRLHFQEG-ASQAHYRKA----RYHFFEDVMNEHGYDTLATAHHA 101
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DD E +++L RN V+ + G+ ++F L+RPLL +K +
Sbjct: 102 DDVLETVLIQLHRN--VIEVKGIP-ERRVFGRGT-------------LIRPLLKETKAQL 145
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + W ED TN+ ++RNRIR +
Sbjct: 146 IEYARKNELAWREDATNQEVTYLRNRIRHEI 176
>gi|440509864|ref|YP_007347300.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia chromaiodes
str. 640]
gi|440454077|gb|AGC03569.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia chromaiodes
str. 640]
Length = 510
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H R+ L SGG DS L + K + F+ L AI + HG+ S E A+
Sbjct: 24 HTRLLLSYSGGLDSTVLLDILTRLKNNS--DHFTLSPFM--LRAIYIHHGISNYSDEWAS 79
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR-LFQKVCIQHQIGVLLIAHH 200
++ GI ++ + + KQ +++ AR++RY+ L+ ++ + +LL AHH
Sbjct: 80 HCFNQCKIRGIPFSVIHINCYNTENKQRNIEALARNLRYKKLYNRLNSKE---ILLTAHH 136
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
+DQ E L L R SG GL+GM+ ++ + Y L+RPLLD S++
Sbjct: 137 MNDQVESLFLALKRGSGPSGLSGMSKNALYANKYR-------------LLRPLLDCSREQ 183
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ W+ED TN F RN +R+ +
Sbjct: 184 LEIYAYKKKLVWIEDDTNTDTRFDRNFLRIKI 215
>gi|315301121|ref|ZP_07872408.1| bifunctional protein TilS/hprT, partial [Listeria ivanovii FSL
F6-596]
gi|313630510|gb|EFR98356.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596]
Length = 485
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 31/210 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFI--DGLLAITVDHGLREESKEEAN 141
++ + VSGGPDS+AL + + + V+HGLRE + +E
Sbjct: 23 KLLVAVSGGPDSLALLHFL------------RMANLVPKEAISVGHVNHGLRENAVKEQF 70
Query: 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGH--LQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
IV I + + ++ R K H ++E AR +RY F+K+ + I L++AH
Sbjct: 71 IVQTYCEKYDIPFFTEKIN-VNERAKSLHKGIEETARIVRYEFFEKIMAKESINKLVLAH 129
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
HADDQ E ++RL R S +G +G+ + YA +RP L +K
Sbjct: 130 HADDQIETILMRLVRGSSSIGWSGIQPKRSMQGGYA--------------IRPFLTITKS 175
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++ + + D +N +P + RNR R
Sbjct: 176 EIIEYANKHELAYEIDESNYNPQYTRNRYR 205
>gi|311028999|ref|ZP_07707089.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13]
gi|311032268|ref|ZP_07710358.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13]
Length = 473
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 129/304 (42%), Gaps = 41/304 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESK 137
L H + +GVSGG DSM L K EA L+ VDH R ES+
Sbjct: 15 LPSHSTVVVGVSGGADSMGLLHYLDSIK--------EAKRL--KLVVAHVDHMFRGAESE 64
Query: 138 EEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLL 196
E+ + V + I E + D K+ +Q AAR+ RY ++KV +++ VL
Sbjct: 65 EDMDFVKEQCEKREILFEAEQIDVSAYQNEKKLSVQVAARECRYAFYEKVMRKYRADVLA 124
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
+ HHADDQ E ++RL R S + G AG+ + F + ++VRP L
Sbjct: 125 LGHHADDQVETILMRLGRGSSMSGHAGI-LPKRTFGAG-------------VIVRPFLTV 170
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSF---KSELQAVISACRR 313
+K ++ + + + DP+N + RNR+R + + F QA +
Sbjct: 171 TKSEIMEYLKANEVPYRHDPSNDKDAYRRNRLRHHILPILKEEFPGLHQRFQAFSEQIQE 230
Query: 314 TRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFL-----ALVLQFICQ 368
+ Y+ + + + + V+D + L +F++K L L+L ++
Sbjct: 231 SEQYIGALMEKEWIDVIKSKENDRVVLDRKPL-------LFMAKPLQRRGIQLILNYLYN 283
Query: 369 RQRP 372
+ P
Sbjct: 284 NEIP 287
>gi|427408307|ref|ZP_18898509.1| tRNA(Ile)-lysidine synthetase [Sphingobium yanoikuyae ATCC 51230]
gi|425713646|gb|EKU76659.1| tRNA(Ile)-lysidine synthetase [Sphingobium yanoikuyae ATCC 51230]
Length = 315
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 92/209 (44%), Gaps = 35/209 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R + VSGGPDSMAL L + + A T+DHGLR ES EA +V
Sbjct: 28 RFGIAVSGGPDSMALLDLAVQ-------------AWPGRVAAATLDHGLRAESAAEAAMV 74
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ ++ + + + G++Q+ AR RY + + +L AHHADD
Sbjct: 75 ARWCAERRVPHATLAPE----TEVSGNIQDWARRQRYAQLEAWRAGAGLDWILTAHHADD 130
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E ++RL+R SGV GLAG+ + + ++RPLL K +
Sbjct: 131 QLETLLMRLNRGSGVGGLAGV------------------RARAGRVLRPLLTVRKAQLQA 172
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+V DP+N P F R +R L
Sbjct: 173 HADQAGLPYVLDPSNADPRFDRAALRKRL 201
>gi|431758730|ref|ZP_19547355.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E3083]
gi|430617098|gb|ELB53984.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium E3083]
Length = 484
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 30/207 (14%)
Query: 84 RIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
RI VSGG DSM L +L + GF+ L + ++H LREES EEA
Sbjct: 35 RILAAVSGGVDSMVLLHLLLQAQRQIGFS-----------LGVVHINHQLREESAEEAAY 83
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ + + + P + ++ AAR+ RY+ F +V + Q L+ AHH D
Sbjct: 84 LRSYCEKKNLPLYVSVWE----NPAKTAIETAARNFRYQAFTQVMEEGQYDTLMTAHHGD 139
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++++ R + +G+ Q F++ LVRPLL FSK+++Y
Sbjct: 140 DQIETVLMKIIRGGQLSTFSGIK-GVQPFATGR-------------LVRPLLSFSKEELY 185
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ED TN+ RNR+R
Sbjct: 186 AYAAESQLVYFEDQTNQLLDVQRNRLR 212
>gi|404398809|ref|ZP_10990393.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fuscovaginae UPB0736]
Length = 442
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 90/203 (44%), Gaps = 29/203 (14%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L SGG DS L L A + G E + L A+ + HGL+ +
Sbjct: 27 LAFSGGLDSTVLLHLLA--RLG-------KTESLPELKALHIHHGLQIAADSWPEHCQAI 77
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+G+ ++VR G L+ AARD RY F V + VLL A H DDQAE
Sbjct: 78 CDSLGVPLQVVRVSVQLG----ASLERAARDARYLAFAGVTQLND--VLLTAQHRDDQAE 131
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
+ RL R +GV GLA M ++ Y LVRPLLD S+ + + +
Sbjct: 132 TLLFRLLRGAGVRGLAAMPVEREVGGGY--------------LVRPLLDVSRGQLERYAR 177
Query: 267 GGNRDWVEDPTNRSPLFVRNRIR 289
+W+EDP+N F RN +R
Sbjct: 178 EHGLNWIEDPSNTDEQFSRNYLR 200
>gi|435852922|ref|YP_007314241.1| tRNA(Ile)-lysidine synthetase [Halobacteroides halobius DSM 5150]
gi|433669333|gb|AGB40148.1| tRNA(Ile)-lysidine synthetase [Halobacteroides halobius DSM 5150]
Length = 466
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 38/268 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
++ +GVSGGPDS+AL + + ++ L ++H LR + +K++A
Sbjct: 22 QVLVGVSGGPDSLALAHILKQLQK----------DYQLDLHIAHLNHQLRGKRAKQDAEF 71
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGH---LQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V S + I D +Q H L++AAR +RY F + + + + H
Sbjct: 72 VKKITSKWQLPVTIESYDV--KSYQQEHSLSLEDAARKIRYNFFFNLLDKLNFDKIAVGH 129
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
HADDQAE +++ R +G+ GL GMA +N I +RPL++ SK
Sbjct: 130 HADDQAETVLMKFLRGAGLKGLGGMA----------------PQNEKI--IRPLIELSKS 171
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVIS----ACRRTR 315
+ C + D TN + RN+IR+ L L + + L A ++ CR
Sbjct: 172 QLQDYCSKYELNPRFDETNAESIQQRNKIRLELLPLLKEDYNNNLVATLNRTAQICRTED 231
Query: 316 SYVEHVCSNLINEAVTVMDQGYAVIDLE 343
++ + L+ + + + ++D+E
Sbjct: 232 DFLSQQAAQLLEKIIIKQNTEQLILDVE 259
>gi|380302183|ref|ZP_09851876.1| tRNA(Ile)-lysidine synthetase [Brachybacterium squillarum M-6-3]
Length = 360
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 32/231 (13%)
Query: 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTA--GWKTGGFNQNGEAGEFI 120
+T E + A L PH + +G+SGG DS+AL TA G + G +
Sbjct: 19 LTDRLEELADDTAAGQLSPH--LLVGLSGGADSLALLATTAWVGSRMGLTTR-------- 68
Query: 121 DGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRY 180
A VDHGL+E S E A + +G+ ++ P G ++ AAR+ R+
Sbjct: 69 ----AAIVDHGLQEGSAEVAERARSQAEWLGVEARVLTVAVDAAAP--GGVENAAREARH 122
Query: 181 RLFQKVCIQHQIGV-LLIAHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSC 238
R + C+ + G+ LL+AH DDQAE ++ L+R +G LAG+ + + S
Sbjct: 123 RALE-TCLAEEGGLALLLAHTLDDQAEQVLMGLARGAGPRALAGIPRRRGPLLRPFLGSG 181
Query: 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
D+ ++D +IC+ +W EDP N P +R R+R
Sbjct: 182 RDEATA-----------LRREDTEEICRLHELEWWEDPMNTDPAHLRARVR 221
>gi|395333791|gb|EJF66168.1| adenine nucleotide alpha hydrolases-like protein [Dichomitus
squalens LYAD-421 SS1]
Length = 592
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 99/232 (42%), Gaps = 28/232 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGW--KTGGFNQNGEAG-------EFIDGLLAITVDHGLRE 134
RIA+ SGGPDS AL L + K G ++N F +L+I V+HGL+
Sbjct: 28 RIAVANSGGPDSTALLFLLSATIRKQLGLDENDTPSSESPTSSRFPLHVLSIHVNHGLQA 87
Query: 135 ESKEEANIVSHRVSDMGIRCEIVRCDW----LDGRPKQG--HLQEAARDMRYRLFQKVCI 188
+ +G + W +P +G + + R+ RY
Sbjct: 88 AASAMEETAVRMSERLGAPSIVEAIPWGTPPFPEKPAEGVANRERLIREARYHRLFAAMD 147
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI- 247
+ V+ HHADDQ E I+R+S+ S GLAGM + + H D++
Sbjct: 148 AARTNVIAFGHHADDQVETAIMRMSQGSSNRGLAGM----RPVRRWGMG-HKDIEYSQFG 202
Query: 248 ------LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVRNRIRMSL 292
+VRP L K + C+ N D+V DPTN P + +RN +R +L
Sbjct: 203 AEGMRSWVVRPFLQIPKGRLLATCEANNLDYVNDPTNFQPGITIRNSVRHAL 254
>gi|429752444|ref|ZP_19285307.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 326
str. F0382]
gi|429177032|gb|EKY18380.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 326
str. F0382]
Length = 418
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 91/211 (43%), Gaps = 34/211 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
+I L +SGG DS+ L L T LL + LR EES +
Sbjct: 11 KILLAISGGIDSVVLTHLLHSHGTE--------------LLLAHCNFQLRGEESDGDEAF 56
Query: 143 VSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V +GI E+ R D Q + Q AAR++RY F ++ H L AHHA
Sbjct: 57 VHDFAKTLGIPLEVKRFDTHQYAIAHQLNTQLAARELRYEWFYELLETHHCDALATAHHA 116
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+D E F++ LSR SG+ GL G+ + +VRPLL +S+ +
Sbjct: 117 NDNLETFLINLSRGSGLDGLLGIP------------------QQTDKIVRPLLQWSRQQI 158
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Y + W ED +N S +VRN IR +
Sbjct: 159 YDYAEAHRLQWREDSSNASNKYVRNVIRHEI 189
>gi|407797385|ref|ZP_11144328.1| tRNA(Ile)-lysidine synthetase [Salimicrobium sp. MJ3]
gi|407018268|gb|EKE30997.1| tRNA(Ile)-lysidine synthetase [Salimicrobium sp. MJ3]
Length = 466
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 29/233 (12%)
Query: 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID 121
DM K + F +R + +K I +SGGPDS+AL + K
Sbjct: 5 DMKKV-DTFVQRHGL--IKEGDTIVAAISGGPDSLALLHYLSELKQS----------LSL 51
Query: 122 GLLAITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMR 179
++ ++DHGLR EES+E+ V+ + + E + D K QEAAR +R
Sbjct: 52 TVIPASIDHGLRGEESREDVAYVAEICERLHLPVEKITLDVGSYMKKNSMGTQEAARILR 111
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y+ +V ++ L + HH DDQ E ++L+R + G+ GM + +
Sbjct: 112 YKALAEVMYTYEADSLALGHHGDDQVETLFMQLTRGASPSGVTGMPVTRKFAGGQ----- 166
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++RPLL+ K+++ C+ DP+N ++ RN R L
Sbjct: 167 ---------IIRPLLEMRKEELEDYCRDAGLSPRYDPSNEETVYTRNAFRHRL 210
>gi|260551924|ref|ZP_05825786.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624]
gi|260405327|gb|EEW98822.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624]
Length = 466
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 121/276 (43%), Gaps = 45/276 (16%)
Query: 61 TDMTKYREAFSRRMAMAGLKPHHRIA------LGVSGGPDSMALCVLTAGWKTGGFNQNG 114
+ ++ + E + R+ LK + +G SGG DSM L L NQ
Sbjct: 3 STLSTFNEVWQRKFRHHVLKQAQEFSENSSFLIGCSGGMDSMLLLHL--------MNQI- 53
Query: 115 EAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA 174
F + AI +DH L+E+S E +V+ + + + I I + DG +L+
Sbjct: 54 ----FPQKIRAIYIDHQLQEQSAEWGKLVASQATSLNISYIIQKVQISDG-----NLEAQ 104
Query: 175 ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234
AR RY+ +Q+ Q++I LL+AHH DQAE ILRL +GV GLA M
Sbjct: 105 ARQARYQAYQQHLQQNEI--LLLAHHQQDQAETAILRLLSGTGVDGLAAM---------- 152
Query: 235 AYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 294
D +N +I RP LD +++ + +++DP N + R R L
Sbjct: 153 --QAIDYRENMTIW--RPFLDLTREQIASWAAQLEVKYIDDPMNYDTHYDRVWCREELWP 208
Query: 295 LSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 330
S F QA+ RT SY+ S ++ E +
Sbjct: 209 FLSKRFPKMQQAL----SRT-SYLMQDASEILEEVL 239
>gi|422852621|ref|ZP_16899285.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK160]
gi|325698021|gb|EGD39902.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK160]
Length = 425
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 45/275 (16%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L ++ + +D LA
Sbjct: 3 KQEFLKKMQEKKYFQDHRKVLIAVSGGLDSMTLLQLLI-----------DSQKELDIELA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLF 183
I V+H R ES +E + +G++ I + G+ E AAR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVK--IFTSSF------SGNFSENAARQFRYDFF 103
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+KV + L+ AHHADDQAE +RL R + + L+GM + +++C +
Sbjct: 104 EKVMQEEHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQSFACGE--- 154
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSF 300
L+RPL F K D I ED +N ++RNRIR + L +L +
Sbjct: 155 -----LIRPLFTFHKSDFPDIQH------FEDSSNFQNDYLRNRIRNLYLPNLEKENPQI 203
Query: 301 KSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
K L+ + ++ + H+ +L E V V Q
Sbjct: 204 KDSLRYLGKEIEDWQTALSHLTRDLDIENVQVFHQ 238
>gi|261338173|ref|ZP_05966057.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093]
gi|270276810|gb|EFA22664.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093]
Length = 287
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 125 AITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLF 183
A+ VDH +++ S E A + + +D+G+ IV LD + +Q + AAR MRY
Sbjct: 77 AVIVDHSMQQGSAEVAARAAKQCADLGLEPVIVERIVLDPQTMRQRGSEAAARQMRYETI 136
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243
+V + +L+AH +DQAE ++ L + G+ G+AGM +QI
Sbjct: 137 TRVAGRTGAEAVLLAHTRNDQAETVLINLLTSGGLDGMAGMPERTQIA------------ 184
Query: 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRN 286
+ L+RPLLD ++ D +IC+ ++ +DPTN L RN
Sbjct: 185 --DVALLRPLLDLTRADTTQICESLGLEFWDDPTNGEFLSARN 225
>gi|410726025|ref|ZP_11364285.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. Maddingley MBC34-26]
gi|410601457|gb|EKQ55968.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. Maddingley MBC34-26]
Length = 467
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 36/287 (12%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
YR+ S + P +I + +SGGPDS+ L + K N EA
Sbjct: 2 YRKVLSYVKDNNLISPGDKILVALSGGPDSVCLLNILYDLKEE-LNIRIEAAH------- 53
Query: 126 ITVDHGLR-EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL--QEAARDMRYRL 182
V+H LR +++ ++ V + MGI+C + R D ++ K+ + + A R +RY
Sbjct: 54 --VNHLLRGDDAFKDEEYVIDLCNKMGIKCFLKRVD-INAYSKEYKMSSEMAGRKVRYDF 110
Query: 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242
F+++ ++ + + AH+A+DQAE + RL R +G+ GL G+ S D
Sbjct: 111 FEEILMKEEFNKIATAHNANDQAETILFRLMRGTGLEGLVGIKASR------------DN 158
Query: 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKS 302
K ++RP+L S+D++ K + N D TN ++ RN+IR+ + +F
Sbjct: 159 K-----VIRPILCLSRDEIEKYIKLKNLRPRIDKTNFEKVYNRNKIRLDILPYMKENFNV 213
Query: 303 ELQAVIS----ACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEIL 345
++ ++ ++ ++E++ ++ N+ D Y +I EI
Sbjct: 214 DIIQTLNRMALLLQKDNQFLENLSLSIYNKYCVESDD-YFIIKKEIF 259
>gi|269121223|ref|YP_003309400.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386]
gi|268615101|gb|ACZ09469.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386]
Length = 442
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 33/214 (15%)
Query: 79 LKPHHRIALGVSGGPDSMAL--CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES 136
LK + ++ + SGGPDS+ L C+ F + E L + V+H LRE++
Sbjct: 20 LKKNDKVLIAFSGGPDSVFLFHCI--------NFFRESLGLE----LELVYVNHKLREDA 67
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVL 195
E+ V +R I D + ++ +EA R+ RYR+F + ++ I +
Sbjct: 68 DEDIKFVKEFAEKYEVRYHIREADVKETAVREKISEEEAGREERYRIFFDIMKENNIDKI 127
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
H+ DD E FI RL R + + GL G+ +K +I +RP+L+
Sbjct: 128 ATGHNLDDNIETFIFRLLRGTALNGLKGIP----------------VKRGAI--IRPILE 169
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
F KD + ++ G + ++ D TN + RN+IR
Sbjct: 170 FRKDYILEVLDGADEEYRLDSTNFETKYTRNKIR 203
>gi|379005990|ref|YP_005255441.1| tRNA(Ile)-lysidine synthase [Sulfobacillus acidophilus DSM 10332]
gi|361052252|gb|AEW03769.1| tRNA(Ile)-lysidine synthase [Sulfobacillus acidophilus DSM 10332]
Length = 473
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 34/211 (16%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H + +G+SGG DS+AL L ++ E E+ L + ++H LR ES EA
Sbjct: 48 HTPLVVGLSGGADSLALTRL--------LHRTAE--EWPVSLHLVHINHQLRSESASEAA 97
Query: 142 IVSHRVSD-MGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYR-LFQKVCIQHQIGVLLIA 198
+ V + +G+ ++ D + P G L+ AAR +RY+ L++ V LL A
Sbjct: 98 WLVQWVEEHLGLPVTVIAVDVI---PFPGESLEMAARRVRYQALWRAVDDVGPDARLLTA 154
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H DDQ E ++R+ +G+ GL+G+A ++ L+RPLL FS+
Sbjct: 155 HQQDDQVETILMRILTGTGIRGLSGIA---------------PVRGR---LIRPLLGFSR 196
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ W+ED +NR P +RNRIR
Sbjct: 197 ASLEAYLADNGWTWLEDASNRDPRIMRNRIR 227
>gi|451999306|gb|EMD91769.1| hypothetical protein COCHEDRAFT_1176118 [Cochliobolus
heterostrophus C5]
Length = 627
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 20/182 (10%)
Query: 128 VDHGLREESKEEANIVSHRV-SDMGIRCEIVRCDW-LDGRP-KQGHLQEAARDMRYRLFQ 184
VDH +R ES EEA+ V+ ++ S +GI ++ W D P + AR +RY+
Sbjct: 25 VDHKVRPESTEEASWVAEQLRSKLGIDSTVIPLTWPTDFDPHDDKRFETEARILRYQALG 84
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRN---SGVLGLAGMAFSSQIFSSYA-YSCHD 240
+ C +I L++AHHADDQAE ++R++ N SG+ + + + + Y Y +
Sbjct: 85 RACRDMKINRLMVAHHADDQAETVMMRMANNRLRSGLQAMQRIEWIPECEGIYGVYHSGN 144
Query: 241 DLKNH------------SILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR-SPLFVRNR 287
LK I ++RPLLDF K + C+ W ED TN+ L RN
Sbjct: 145 PLKPRPSLNIPFPIEQGGIKILRPLLDFEKTRLIATCEEKGIAWAEDKTNQIQTLTSRNA 204
Query: 288 IR 289
IR
Sbjct: 205 IR 206
>gi|325981478|ref|YP_004293880.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212]
gi|325530997|gb|ADZ25718.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212]
Length = 450
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Query: 72 RRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131
R +A +KP +A+ +SGG DS+ L A + E L A+ ++HG
Sbjct: 17 RNTLLAHIKPGDHLAVALSGGVDSVVLLHALASL----------SREIPLTLSAVHINHG 66
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQH 190
+ + + H GI I +L + + G L+ AR+ RYR+F ++
Sbjct: 67 ISSNATLWSKFCCHLCHSYGISIYIA---YLKIKKETGESLEAKAREERYRVFSQI---- 119
Query: 191 QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLV 250
+++A H DDQAE +L+L R +G+ GL GM ++ S ++
Sbjct: 120 HANYVVLAQHLDDQAETLLLQLLRGAGIKGLCGMPPVRKLSSPAIPQ-----------IL 168
Query: 251 RPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
RPLL+ S+D++ + +W++D +N S +F RN +R
Sbjct: 169 RPLLEISRDEIESYGRLNKLNWIKDESNDSIIFNRNFLR 207
>gi|339626532|ref|YP_004718175.1| tRNA(Ile)-lysidine synthetase-like protein [Sulfobacillus
acidophilus TPY]
gi|339284321|gb|AEJ38432.1| tRNA(Ile)-lysidine synthetase-like protein [Sulfobacillus
acidophilus TPY]
Length = 446
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 34/211 (16%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141
H + +G+SGG DS+AL L ++ E E+ L + ++H LR ES EA
Sbjct: 21 HTPLVVGLSGGADSLALTRL--------LHRTAE--EWPVSLHLVHINHQLRSESASEAA 70
Query: 142 IVSHRVSD-MGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYR-LFQKVCIQHQIGVLLIA 198
+ V + +G+ ++ D + P G L+ AAR +RY+ L++ V LL A
Sbjct: 71 WLVQWVEEHLGLPVTVIAVDVI---PFPGESLEMAARRVRYQALWRAVDDVGPDARLLTA 127
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H DDQ E ++R+ +G+ GL+G+A ++ L+RPLL FS+
Sbjct: 128 HQQDDQVETILMRILTGTGIRGLSGIA---------------PVRGR---LIRPLLGFSR 169
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ W+ED +NR P +RNRIR
Sbjct: 170 ASLEAYLADNGWTWLEDASNRDPRIMRNRIR 200
>gi|384099478|ref|ZP_10000564.1| tRNA(Ile)-lysidine synthase [Imtechella halotolerans K1]
gi|383832826|gb|EID72296.1| tRNA(Ile)-lysidine synthase [Imtechella halotolerans K1]
Length = 437
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 36/214 (16%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAIT-VDHGLR-EESKEE 139
H + + VSGG DSM L L +K G+ AI + LR ES +
Sbjct: 18 HQLVLIAVSGGLDSMVLANL---FKEAGYT------------FAIAHCNFKLRANESDAD 62
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
V I + + D + + Q AAR++RY+ F + +H +L A
Sbjct: 63 EQFVVQWAQRHHIPIHVKKFDTKQYATSHKLNTQLAARELRYKWFSSLVQEHSYSAVLTA 122
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
HHADD E F++ LSR +G+ GL G+ KN +I VRPLL FS+
Sbjct: 123 HHADDALETFLINLSRGTGLDGLTGIP----------------EKNGAI--VRPLLPFSR 164
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ + +W ED +N + ++RNRIR ++
Sbjct: 165 LELKSYAEENKLEWREDSSNATINYLRNRIRHTI 198
>gi|429755196|ref|ZP_19287866.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|429175461|gb|EKY16902.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 431
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 34/207 (16%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146
+SGG DS+ VLT T G LL + LR ES ++ V
Sbjct: 16 AISGGIDSV---VLTHLLYTHGIE-----------LLLAHCNFQLRGTESDDDEAFVRTF 61
Query: 147 VSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+++G+ E+ R D Q + Q AAR++RY+ F ++ H + AHHA+D
Sbjct: 62 AAELGVPLEVKRFDTHQYASSHQLNTQLAARELRYQWFDELTSTHFCDAIATAHHANDNL 121
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E F + LSR SG+ GL G+ ++RPLL FS+ +Y+
Sbjct: 122 ETFFINLSRGSGLEGLLGIPEEKDT------------------IIRPLLQFSRQQIYEYA 163
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q W ED +N + +VRN IR +
Sbjct: 164 QAKRLKWREDSSNETNKYVRNVIRHDI 190
>gi|420150921|ref|ZP_14658075.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394751303|gb|EJF35089.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 431
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 34/207 (16%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146
+SGG DS+ VLT T G I+ LLA + LR ES ++ V
Sbjct: 16 AISGGIDSV---VLTHLLYTHG----------IEVLLA-HCNFQLRGTESDDDEAFVRTF 61
Query: 147 VSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+++G+ E+ R D Q + Q AAR++RY+ F ++ H + AHHA+D
Sbjct: 62 AAELGVPLEVKRFDTHQYASSHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNL 121
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E F + LSR SG+ GL G+ ++RPLL FS+ +Y+
Sbjct: 122 ETFFINLSRGSGLEGLLGIPEEKDT------------------IIRPLLQFSRQQIYEYA 163
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q W ED +N + +VRN IR +
Sbjct: 164 QAKRLKWREDSSNETNKYVRNVIRHDI 190
>gi|340620563|ref|YP_004739016.1| tRNA(Ile)-lysidine synthase [Zobellia galactanivorans]
gi|339735360|emb|CAZ98737.1| tRNA(Ile)-lysidine synthase [Zobellia galactanivorans]
Length = 435
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 47/252 (18%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTG------GFNQNGEAGEFIDGLLAITVDHGLREESK 137
R L SGG DS+AL L A FN G + +GL+ K
Sbjct: 20 RFLLACSGGVDSVALLHLCARLDLDFAVAHCNFNLRGAESDADEGLVRDLA-------KK 72
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+ I +R + + +Q AAR++RYR F ++ + I L+
Sbjct: 73 HKVKIYVNRFDTKSYSTQ-----------NKVSIQVAARELRYRWFSEIMDREGIKTLVT 121
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHHADD E F++ LSR +G+ GL G+ +K+H+ L RPLL F+
Sbjct: 122 AHHADDSLETFLINLSRGTGIDGLTGIP----------------VKSHN--LSRPLLHFT 163
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM----SLGDLSSCSFKSELQAVISACRR 313
++ + + N W ED +N ++RN+IR +L +L+ +F + Q + +
Sbjct: 164 REWILSYARAENLVWREDASNADTKYLRNKIRHEIVPALKELNP-AFLANFQKTQNYLSQ 222
Query: 314 TRSYVEHVCSNL 325
T +EH S+L
Sbjct: 223 TALVLEHHISDL 234
>gi|423334339|ref|ZP_17312119.1| cell cycle protein [Lactobacillus reuteri ATCC 53608]
gi|337728147|emb|CCC03238.1| cell cycle protein [Lactobacillus reuteri ATCC 53608]
Length = 477
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 27/233 (11%)
Query: 61 TDMTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
+MT ++AF R + + ++ + VS G DSM L L + Q
Sbjct: 12 ANMTDLQQAFERHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLSSKNRPQ------- 64
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
++ ++H LR++S+ E + ++ + W Q ++ AAR R
Sbjct: 65 ---IIVAHMNHELRKQSQLEERFIRQYCKQNDLKLAV--AHWPQTLHPQTGVENAARQAR 119
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y FQ+V +Q +LL AHH +D AE +++++R + L G+ + F+S
Sbjct: 120 YHFFQEVMKDNQAKILLTAHHQNDLAETMLMKMTRGGQLSQLVGIR-DRRPFASGT---- 174
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L+RPLL FSK + K + W ED TN+ RNR R ++
Sbjct: 175 ---------LIRPLLPFSKQQLKKYALQHHLKWYEDKTNKDLNIQRNRFRHAI 218
>gi|390444551|ref|ZP_10232328.1| cell-cycle protein [Nitritalea halalkaliphila LW7]
gi|389664558|gb|EIM76050.1| cell-cycle protein [Nitritalea halalkaliphila LW7]
Length = 240
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 93/214 (43%), Gaps = 34/214 (15%)
Query: 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
G P L +SGG DS AL L + GF LL V++GLR +S
Sbjct: 14 GFDPKKPTWLAISGGMDSTALLHLM---RLSGFP-----------LLLAHVNYGLRGAQS 59
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH-QIGVL 195
+ V + + + R G +QEAAR +RY F + QH + L
Sbjct: 60 DGDEAFVRAMATQYQLPLSVKRSSPEALEAMGGGVQEAARILRYTWFDSLLRQHPEAQAL 119
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
L+AHH +DQAE +L+L R +G+ G+ GM + +Y RPLL
Sbjct: 120 LLAHHQEDQAETLLLQLLRGTGLKGMGGM---RAVQGAY---------------WRPLLP 161
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
FSK ++ Q W ED +N S + RN +R
Sbjct: 162 FSKAELRAFLQTQGLSWREDASNASTYYQRNYLR 195
>gi|429745474|ref|ZP_19278887.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429168871|gb|EKY10680.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 380
str. F0488]
Length = 431
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 34/207 (16%)
Query: 88 GVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146
+SGG DS+ VLT T G LL + LR ES ++ V
Sbjct: 16 AISGGIDSV---VLTHLLYTHGIE-----------LLLAHCNFQLRGTESDDDEAFVRTF 61
Query: 147 VSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205
+++G+ E+ R D Q + Q AAR++RY+ F ++ H + AHHA+D
Sbjct: 62 AAELGVPLEVKRFDTHQYASSHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNL 121
Query: 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKIC 265
E F + LSR SG+ GL G+ ++RPLL FS+ +Y+
Sbjct: 122 ETFFINLSRGSGLEGLLGIPEEKDT------------------IIRPLLQFSRQQIYEYA 163
Query: 266 QGGNRDWVEDPTNRSPLFVRNRIRMSL 292
Q W ED +N + +VRN IR +
Sbjct: 164 QAKRLKWREDSSNETNKYVRNVIRHDI 190
>gi|218290654|ref|ZP_03494745.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
LAA1]
gi|218239319|gb|EED06517.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
LAA1]
Length = 277
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 89/203 (43%), Gaps = 24/203 (11%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
+GVSGG DSM L L EA + G + V H LRE + +A V
Sbjct: 27 IGVSGGVDSMVLLHLCQRAAE-------EAPSALGGFSVVHVHHHLRETADRDAEFVEQY 79
Query: 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206
+ I CEI +D R G EAA + + GV+L+AHHA D+ E
Sbjct: 80 CREREIPCEIAHVKVVDER---GEGLEAAARRARYQALAERARAKGGVILVAHHAQDELE 136
Query: 207 LFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266
FI+RL R +G GL M +++ + + + RPL+ K ++ + +
Sbjct: 137 TFIMRLLRGAGPGGLGAMRPEAEM--------------NGVRVARPLIAVEKGEIDRYAE 182
Query: 267 GGNRDWVEDPTNRSPLFVRNRIR 289
VED TN P F RNR+R
Sbjct: 183 AHGVPHVEDETNEDPRFFRNRVR 205
>gi|332523953|ref|ZP_08400205.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str.
Jelinkova 176]
gi|332315217|gb|EGJ28202.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str.
Jelinkova 176]
Length = 427
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 100/225 (44%), Gaps = 39/225 (17%)
Query: 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
Y + ++ + A K H ++ + VSGG DSM L +K +D +A
Sbjct: 3 YSKIYTYCLQKAFFKNHKKVLIAVSGGVDSMNLLHFLHTFKRQ-----------LDISIA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
I V+H R+ES+ E + + I I D+ G ++ ARD RY+ F+
Sbjct: 52 IAHVNHKQRKESELEEDYLKKWAEQHDIPIFI---DYFKG----NFSEQRARDFRYQFFK 104
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
++ +Q L+ AHHADDQ E +RL R S + LAG+ Q FS
Sbjct: 105 RIMVQGDYTALVTAHHADDQVETVFMRLIRGSLLRYLAGIK-EVQPFSGGQ--------- 154
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RP L F K+D+ N ED +N + RNR+R
Sbjct: 155 ----LIRPFLHFHKNDL------PNPYHFEDSSNLGLDYFRNRVR 189
>gi|422414655|ref|ZP_16491612.1| bifunctional protein TilS/hprT, partial [Listeria innocua FSL
J1-023]
gi|313625438|gb|EFR95195.1| bifunctional protein TilS/hprT [Listeria innocua FSL J1-023]
Length = 453
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 25/210 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + VSGGPDS AL L W + + + ++H LRE +++E V
Sbjct: 23 KLLVAVSGGPDSFAL--LHFLWSAKLVPK--------EAIAVAHLNHHLRENAEKEQLAV 72
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPK-QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ I I D K Q ++E AR +RY F+KV ++ I L++AHHAD
Sbjct: 73 QTFCEERDIPFFIEEVDVKKRAEKLQKGIEETARIIRYGFFEKVMAENNINKLVLAHHAD 132
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQ E ++RL R S +G +G+ ++ YA +RP L +K ++
Sbjct: 133 DQIETILMRLVRGSSSIGWSGIQPKREVRGGYA--------------IRPFLPITKAEII 178
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + D +N S + RNR R L
Sbjct: 179 EYANTHTLPYEIDESNTSQEYTRNRYRTQL 208
>gi|227509310|ref|ZP_03939359.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227191240|gb|EEI71307.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 478
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 100/209 (47%), Gaps = 35/209 (16%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG----LLAITVDHGLREESKEEA 140
+ + VS G DSM L L E +D ++ VDH LRE+SK E
Sbjct: 33 VVVAVSTGIDSMTLLYLL---------------EHLDQCSPQIIVAYVDHCLREQSKRET 77
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200
+ SD ++ +V+ W + Q ++ AAR+ RYR F++V ++Q VLL AHH
Sbjct: 78 VFIQQYCSDHHLK--LVQAVWNRKQHPQHGIEAAAREFRYRFFRRVLKENQATVLLTAHH 135
Query: 201 ADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDD 260
DD AE +++L R + L G+A Q +S+ +VRPLL FSK +
Sbjct: 136 GDDLAETMLMKLVRGGQIESLIGIA--EQRPTSFGS------------VVRPLLHFSKKE 181
Query: 261 MYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+++ + W ED TNR RNR R
Sbjct: 182 IHQFASSVHIKWFEDETNRDLTIQRNRFR 210
>gi|388470183|ref|ZP_10144392.1| tRNA(Ile)-lysidine synthetase [Pseudomonas synxantha BG33R]
gi|388006880|gb|EIK68146.1| tRNA(Ile)-lysidine synthetase [Pseudomonas synxantha BG33R]
Length = 439
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 96/223 (43%), Gaps = 25/223 (11%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ + HGL+ + +G+ ++R G L+ AARD
Sbjct: 46 ENLPALSAVHIHHGLQAAADAWPAHCQSVCDSLGVPLRVMRVQVSPG----ASLERAARD 101
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY+ F +V + VLL A H DDQAE + RL R +GV GLA M + + +
Sbjct: 102 ARYQAFMQVMGAGE--VLLTAQHRDDQAETLLFRLLRGAGVRGLAAMPERRPLATGH--- 156
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
LVRPLL S+ + W+EDP+N P F RN +R + +
Sbjct: 157 -----------LVRPLLAVSRGALEAYAHEHQLKWIEDPSNADPRFSRNYLRRQVFPALT 205
Query: 298 CSFKSELQAVISACRRTR--SYVEHVCSNLINEAVTVMDQGYA 338
+ QA++S R S + + L + +T DQ A
Sbjct: 206 QRWP---QAILSLARTAEHLSEAQGLLDELAHMDLTAADQPSA 245
>gi|392988407|ref|YP_006487000.1| tRNA(Ile)-lysidine synthase [Enterococcus hirae ATCC 9790]
gi|392335827|gb|AFM70109.1| tRNA(Ile)-lysidine synthase [Enterococcus hirae ATCC 9790]
Length = 480
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 33/231 (14%)
Query: 62 DMTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALC-VLTAGWKTGGFNQNGEAGEF 119
D K R+ F + G L R L VSGG DSM L ++ K GF
Sbjct: 6 DARKIRQRFLTNCEINGYLNEQTRALLAVSGGVDSMVLLDLMMEAQKKWGF--------- 56
Query: 120 IDGLLAIT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDM 178
LA+T ++H LREES E + + ++ + +P + ++ AAR+
Sbjct: 57 ---FLAVTHINHQLREESVHEVAYLKKYCQQHQLPLQVEVWE----KPTKKGIETAAREF 109
Query: 179 RYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238
RY++F K L+ AHH DDQ E +++L R + AG+ +Q FS+
Sbjct: 110 RYQVFAKQMQSGSYDCLMTAHHGDDQMETVLMKLLRGGQLSTYAGIK-EAQPFSNGR--- 165
Query: 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
L+RPLL FSK +Y+ + ED TN+ RNR+R
Sbjct: 166 ----------LIRPLLGFSKAQLYQYASERELVYFEDHTNQELDVQRNRLR 206
>gi|373464515|ref|ZP_09556052.1| tRNA(Ile)-lysidine synthetase [Lactobacillus kisonensis F0435]
gi|371762370|gb|EHO50904.1| tRNA(Ile)-lysidine synthetase [Lactobacillus kisonensis F0435]
Length = 466
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 119/278 (42%), Gaps = 37/278 (13%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
+P ++ + VS G DSM L L NQN ++ VDH LR S+ E
Sbjct: 18 RPGSKVVVAVSTGVDSMTLLHLI-----NHLNQNRPT------IIVAYVDHELRAASQTE 66
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH----LQEAARDMRYRLFQKVCIQHQIGVL 195
+ +R +V W PK H ++ AAR RY F++V +++ +L
Sbjct: 67 TAFIKQFCQSHHLR--LVTTSW----PKSEHPTNGIEAAARAFRYAFFKQVLEENEASIL 120
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
L AHH DD AE +++L+R + L G++ Q ++ ++RPLL
Sbjct: 121 LTAHHGDDLAETVLMKLARGGQLTSLIGISEQRQFGTAQ--------------VIRPLLQ 166
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTR 315
FSKD + + W ED TN S RNRIR + L L+ V R+
Sbjct: 167 FSKDQIRAFADTNHLRWFEDETNDSLAIERNRIRHKVVPLLKRENSQFLRHVFDYSRQIE 226
Query: 316 SYVEHVCSNLINEAVTVM--DQGYAVIDLEILNPSKIE 351
+ + + EA ++ D V+DL LN IE
Sbjct: 227 TATASLNELIAAEAERLVKGDPKQLVVDLHALNQHSIE 264
>gi|374709983|ref|ZP_09714417.1| tRNA(Ile)-lysidine synthetase [Sporolactobacillus inulinus CASD]
Length = 478
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANI 142
R+ LGVSGG DSMAL + A + E+ L +VDH LR ++S E+ N
Sbjct: 22 RLLLGVSGGADSMALLLYFAE----------KQREWGLELAVCSVDHALRGKDSSEDLNY 71
Query: 143 VSHRVSDMGIRCEIVRCD---WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V+ + I + D W R ++ L+ AAR +RYR F + L++AH
Sbjct: 72 VACFCAKRDILFIGKKVDARAW--SRAQKISLETAARALRYRAFAEAMDTFHADALVLAH 129
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
H DDQ E ++R R + +G AG+ LVRPLL +K
Sbjct: 130 HGDDQVETMLMRAVRGTVGIGRAGIPVRRPFAGRE--------------LVRPLLSQTKR 175
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
D+ + C DP+N+S + RNR R
Sbjct: 176 DLERYCAANGIVSRNDPSNQSDVHTRNRFR 205
>gi|241888931|ref|ZP_04776235.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC
10379]
gi|241864180|gb|EER68558.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC
10379]
Length = 438
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 124/278 (44%), Gaps = 32/278 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+IALG+SGG DS+AL L E E L+A ++HGLRE+S EEA V
Sbjct: 12 KIALGLSGGVDSIALFHLLVT----------EYKESYKELVAFHINHGLREQSYEEAEFV 61
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA--ARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ V + ++ + D + + H E AR +RY F+++ L+ AHH
Sbjct: 62 ENFVKNYNVKFYKKELNMKD-QIRDSHTSEEMLARKLRYGAFEEMSSLEGGVKLITAHHK 120
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+DQ E ++RL L+G + Y + + + RPLL+ K D+
Sbjct: 121 NDQVENILMRL--------LSGRSM------DYNLMIEEKTTIGKLAVYRPLLNVLKADL 166
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRTRSY 317
+ + + D TN + RN IR + L D+++ SF + L S + +
Sbjct: 167 EQYADKNDLKYYVDSTNFDTDYTRNNIRHNIVPLLNDVNAASFDN-LINFSSYYQNINTE 225
Query: 318 VEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFL 355
++H N+ V +++ +D E L + E+I+
Sbjct: 226 LKHKVLEAKNDYVISLEEDKVELDKEKLLKNTKEEIYF 263
>gi|422850485|ref|ZP_16897155.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK150]
gi|325695771|gb|EGD37670.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK150]
Length = 425
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 118/274 (43%), Gaps = 43/274 (15%)
Query: 67 REAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA 125
++ F ++M + H ++ + VSGG DSM L L +Q A E LA
Sbjct: 3 KQEFLKKMQERKYFQDHRKVLVAVSGGLDSMTLLQLLID------SQKELAIE-----LA 51
Query: 126 IT-VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQ 184
I V+H R ES +E + +G++ + AR RY F
Sbjct: 52 IAHVNHKQRPESDQEEKALVKIAEQLGVKIFTSSF-------SGSFSENVARQFRYDFFG 104
Query: 185 KVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKN 244
KV + L+ AHHADDQAE +RL R + + L+GM + ++C +
Sbjct: 105 KVMQEGHYTALVTAHHADDQAETVFMRLLRGARLRHLSGMK------AVQPFACGE---- 154
Query: 245 HSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR-MSLGDL--SSCSFK 301
L+RPLL F K D I D ED +N ++RNRIR + L DL + FK
Sbjct: 155 ----LIRPLLTFHKSDFPDI------DHFEDSSNFQNDYLRNRIRNLYLPDLEKENPQFK 204
Query: 302 SELQAVISACRRTRSYVEHVCSNLINEAVTVMDQ 335
L+ + ++ + H+ +L E + V Q
Sbjct: 205 DSLRYLGKEIEDWQTALSHLTRDLDIENIQVFHQ 238
>gi|312959409|ref|ZP_07773926.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6]
gi|311286126|gb|EFQ64690.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6]
Length = 439
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 108/256 (42%), Gaps = 35/256 (13%)
Query: 118 EFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
E + L A+ + HGL+ + +G+ ++R G + AARD
Sbjct: 46 ETLPPLSAVHIHHGLQAAADAWPGHCQSVCDGLGVPLRVMRVQVQPG----ASPERAARD 101
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237
RY+ F +V + VLL H DDQAE + RL R +GV GLA M ++ +
Sbjct: 102 ARYQAFTEVTGAGE--VLLTGQHRDDQAETLLFRLLRGAGVRGLAAMPAHRRLAGGH--- 156
Query: 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297
LVRPLLD S+ + W+EDP+N P F RN +R +
Sbjct: 157 -----------LVRPLLDVSRVALENYADAHQLQWIEDPSNADPRFSRNYLRHRV----- 200
Query: 298 CSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILN-PSKIEDIFLS 356
F + + A VEH ++EA ++D+ A +DL+ + PS + L
Sbjct: 201 --FPTLTERWPQAVSNLARAVEH-----LDEAQGLLDE-LACMDLKTADQPSPFPWLPLP 252
Query: 357 KFLALVLQFICQ-RQR 371
L+ + RQR
Sbjct: 253 SLALTPLRELSDARQR 268
>gi|260221174|emb|CBA29474.1| tRNA(Ile)-lysidine synthase [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 326
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 94/224 (41%), Gaps = 37/224 (16%)
Query: 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE 134
AM +P + + SGG DS AL V A ++ ++AI V+HGL+
Sbjct: 8 AMRAFEPALPLGVAYSGGADSSALLVACAR-------------QWPGQVVAIHVNHGLQA 54
Query: 135 ESKEEANIVSHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRYRLF----QKVCI 188
+ + S +GI E V + G+ + +AAR RY+ F Q C
Sbjct: 55 AAADFEAHCRSVCSRLGIPLHVEAVHAHAVPGQSPE----DAARIARYKAFDALAQMECA 110
Query: 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSIL 248
I + IA HADDQ E +L L R +G+ GL+GM Q +
Sbjct: 111 GVAIKSIAIAQHADDQVETMLLALGRGAGLAGLSGMPAQWQ--------------RGKVH 156
Query: 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
RPLL + D + + N WV DPTN + RN IR L
Sbjct: 157 FFRPLLQVAGDALKRWLVANNEPWVSDPTNADHRYTRNHIRSEL 200
>gi|399889907|ref|ZP_10775784.1| tRNA(Ile)-lysidine synthase [Clostridium arbusti SL206]
Length = 463
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 39/249 (15%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEA 140
+ ++ + VSGGPDSM C+L A N + L+ V+H LR +ES E+
Sbjct: 18 NDKVIVAVSGGPDSM--CLLHA--------LNSIKNKLEINLVVAHVNHCLRGKESDEDE 67
Query: 141 NIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQE-AARDMRYRLFQKVCIQHQIGV--LLI 197
V S + + +R D ++G E A R RY F+ V + +IG + I
Sbjct: 68 EYVKRICSKLNVDFYNIRVDINKISKEKGISSEMAGRTARYEFFENV--RKKIGAQKIAI 125
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMA-FSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AH+A+DQAE I+R+ R +GV GL G+ IF VRPL+
Sbjct: 126 AHNANDQAETIIMRIMRGTGVSGLIGIKPIRDGIF------------------VRPLIKI 167
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRT-- 314
+++++ C+ N + D TN ++ RN++R+ L +F ++ ++ T
Sbjct: 168 NREEIEYYCEKNNINPRIDKTNLENIYSRNKVRLELIPYIKENFNKDIVMTLNRLSDTVN 227
Query: 315 --RSYVEHV 321
Y+E+V
Sbjct: 228 IDNDYLEYV 236
>gi|393775407|ref|ZP_10363720.1| tRNA(Ile)-lysidine synthetase [Ralstonia sp. PBA]
gi|392717457|gb|EIZ05018.1| tRNA(Ile)-lysidine synthetase [Ralstonia sp. PBA]
Length = 455
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 94/214 (43%), Gaps = 24/214 (11%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+A+ +SGG DSM L + A ++ EA L A V HGL + + +
Sbjct: 26 VAVALSGGRDSMVLLHVMAA-----LLRSQEAAFE---LRAFHVHHGLSPHADQWLEFCA 77
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ + + E R R L+ AR+ RY +C +H + L+ AHH DDQ
Sbjct: 78 AECARLSVPFEAHRV--AIQRAGGESLEAVAREQRYTALGDLCRRHGVTALMTAHHQDDQ 135
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
E +L+L R +GV GLA M + H I L+RP LD + + +
Sbjct: 136 IETLLLQLVRGAGVDGLAAMGPQRNL--------------HGITLLRPWLDVPRTAIEAL 181
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSC 298
+ WV+D +N P F RN +R L L++
Sbjct: 182 ARQHGITWVDDESNDDPRFARNALRQWLPGLAAV 215
>gi|255534562|ref|YP_003094933.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10]
gi|255340758|gb|ACU06871.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10]
Length = 434
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 118/266 (44%), Gaps = 40/266 (15%)
Query: 76 MAGLKPH---HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
+ LKP R L VSGG DSM L L F+ + E V++ L
Sbjct: 11 LLNLKPDPESARYLLAVSGGVDSMVLLYL--------FSHSNLEFE------VAHVNYRL 56
Query: 133 RE-ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQ 191
R +S + IV + + + DG+P +Q AR++RY F+K+ IQ
Sbjct: 57 RGVDSDADQRIVEEFCAKHHLTLHVYEVGDHDGKPANS-VQLWARELRYGFFRKIQIQSD 115
Query: 192 IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVR 251
+ ++ AHH +DQ E FI+ LSR SG+ GL+G+ N + +L R
Sbjct: 116 LQYIVTAHHLNDQLETFIINLSRASGLNGLSGIP-----------------SNENGIL-R 157
Query: 252 PLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDL---SSCSFKSELQAVI 308
PLL+F+K+D+Y + + ED +N ++RN IR + ++ F I
Sbjct: 158 PLLNFTKNDIYDFAAQRSIQFGEDVSNSKNDYLRNFIRNEIAHRLLETNTGFLPNFSRTI 217
Query: 309 SACRRTRSYVEHVCSNLINEAVTVMD 334
+ + ++ S + +E ++ D
Sbjct: 218 HYLDQAKDFIHEQISAVEDEIISHSD 243
>gi|377556165|ref|ZP_09785886.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gastricus PS3]
gi|376168719|gb|EHS87454.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gastricus PS3]
Length = 450
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKV 186
V+H LR +S +EA + D I +I DW + P +G ++EAAR RYR F +V
Sbjct: 51 VNHHLRTQSDQEAQFLVQYCRDHHIAIQI--ADWHVADHPDKG-VEEAARQFRYRFFYQV 107
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHS 246
+ Q +LL AHH +D AE +++L R + + G+ + + +
Sbjct: 108 MDKEQSRILLTAHHQNDLAETVLMKLVRGGWLKSIVGLQTARTFNTGW------------ 155
Query: 247 ILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L+RP L SK+++ + Q W ED +N+S + RNR R +
Sbjct: 156 --LLRPWLQISKEEILRQAQVIGLTWYEDQSNQSMVIQRNRFRHQI 199
>gi|238019645|ref|ZP_04600071.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748]
gi|237863686|gb|EEP64976.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748]
Length = 332
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 93/207 (44%), Gaps = 23/207 (11%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RI + SGGPDSMAL L T + + G I VDH +R ESK+E +
Sbjct: 25 RILVACSGGPDSMALLYLLHDIATHR-HTTYKIGVAI-------VDHCIRPESKDEVLWL 76
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEA-ARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
H+V ++G+ D + +E R +RY+ ++ + +AHH D
Sbjct: 77 QHQVEELGLPFYSATFDVPSLSKEHKKSEETIGRQVRYQWLNEIAQSEGYDYISVAHHKD 136
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
DQAE + L R +G+ GL GMA S ++ I ++RPLLD K+++
Sbjct: 137 DQAESILAHLIRGTGLNGLTGMAVVSN--------------DYDIPVIRPLLDVPKEELL 182
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ D TN + RN+IR
Sbjct: 183 AYLADRKLTYCIDSTNDDIRYQRNKIR 209
>gi|417860848|ref|ZP_12505903.1| hypothetical protein Agau_L100271 [Agrobacterium tumefaciens F2]
gi|338821252|gb|EGP55221.1| hypothetical protein Agau_L100271 [Agrobacterium tumefaciens F2]
Length = 443
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 104/229 (45%), Gaps = 27/229 (11%)
Query: 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139
KP H I + +SGG DS G E G + A+T+DHGLR ES +E
Sbjct: 28 KPAH-ILVAISGGSDST-------GLLLALHEAAAEKGRDEVRVSAVTIDHGLRAESADE 79
Query: 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
A VS +D+GI R W +P G + EA+R RYRL +V + ++ H
Sbjct: 80 AEKVSLLCADLGIAHATRR--WGGIKPVSG-ISEASRLARYRLIAEVARKIDADLIATGH 136
Query: 200 HADDQAELFILRLSRNSGV--LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
DQ E +R +R+ G GL+GMA + Y H H ++ RP L
Sbjct: 137 TIGDQRETVAMRAARSGGEDNPGLSGMA------DAVLYDGH-----HWVM--RPFLTCE 183
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQA 306
+ + + +R W +DP+N + + R R+R SL D S +E A
Sbjct: 184 RQAIREFVSSRSRGWFDDPSNENTRYERVRVRQSLTD-SQAQIDTEAAA 231
>gi|46117032|ref|XP_384534.1| hypothetical protein FG04358.1 [Gibberella zeae PH-1]
Length = 742
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 86/193 (44%), Gaps = 14/193 (7%)
Query: 73 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132
R A RI L VSGG DSMAL L + + F + A + G +A+ VDH L
Sbjct: 95 RFPTARFARPQRIILAVSGGVDSMALAFLVSKF-IRMFRGSKVADNPVHGAMAVVVDHKL 153
Query: 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGR-----PKQ-GHLQEAARDMRYRLFQKV 186
R+ S EA V + + I+ + W D R P++ +++ AR RYR ++
Sbjct: 154 RDGSDLEAAGVVKELRKLDIKANVAPLAWKDERYNGLDPRKLPNVEGLARTYRYRALGRI 213
Query: 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY----AYSC---H 239
C L AHH DDQ E ++RL G GL G+ ++ I Y Y
Sbjct: 214 CEFMGANSLFFAHHRDDQYETVLMRLLGGHGYRGLRGIREANSIPECYDMHGVYKSGLLD 273
Query: 240 DDLKNHSILLVRP 252
D LK + L RP
Sbjct: 274 DQLKANPALSFRP 286
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 227 SSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP-LFVR 285
+ +IF Y ++++ +++ RPLL+F KD + C+ WVED TN P L R
Sbjct: 326 TEEIFDDVPYLKPLEVEDGGVMIYRPLLEFDKDRLIATCEANGISWVEDETNTDPTLTTR 385
Query: 286 NRIRMSL--GDLSSCSFKSELQAVISACR-RTRSYVEHVCSNLINEAV 330
N IR + +L K + ++ C+ RT+ L+ EAV
Sbjct: 386 NAIRYMVRNHELPKALQKPAILSLAERCKQRTKEEEAEAKRYLVREAV 433
>gi|398355014|ref|YP_006400478.1| tRNA(Ile)-lysidine synthase TilS [Sinorhizobium fredii USDA 257]
gi|390130340|gb|AFL53721.1| tRNA(Ile)-lysidine synthase TilS [Sinorhizobium fredii USDA 257]
Length = 445
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 111/256 (43%), Gaps = 27/256 (10%)
Query: 69 AFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFID-GLLAIT 127
A +RR + +KP RI + +SGG DS L V + EA EF L+A T
Sbjct: 7 AAARRFLSSFIKPS-RILVAISGGSDSKGLLV--------ALHAALEATEFNGFSLVACT 57
Query: 128 VDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVC 187
VDH LR +S +EA V + +GI I C W +P G +Q AAR RY L
Sbjct: 58 VDHALRPQSADEAVAVGAFCAGLGIPHRI--CRWQGDKPLAG-IQAAARRSRYGLLADAA 114
Query: 188 IQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSI 247
++ H DDQ E +R +R G + ++ ++ I
Sbjct: 115 AFFGADCIVTGHTRDDQNETITMRGARGQGQGQGSAGMAAAMLY------------GRRI 162
Query: 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLG--DLSSCSFKSELQ 305
++RP L + D+ + W++DP+N +P+F R R+R SL + S + Q
Sbjct: 163 WVLRPFLYVGRADIRAFLEARGIGWLDDPSNENPVFERVRVRASLAVSGFAPASKRGGSQ 222
Query: 306 AVISACRRTRSYVEHV 321
S+ R EH+
Sbjct: 223 RASSSIRAATLLAEHL 238
>gi|237747645|ref|ZP_04578125.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13]
gi|229379007|gb|EEO29098.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13]
Length = 473
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 118/275 (42%), Gaps = 26/275 (9%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
RIA+ SGG DS L L + A E L A V HGL + +
Sbjct: 43 RIAIAYSGGLDSSVLLHLAHRF----------AIENDCALFAFHVHHGLNPHADDWLAHC 92
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
+ +G+ + R +D + G ++ AR+ RYR ++C +H I +LL AHH DD
Sbjct: 93 ENECIRLGVSFDSQRVQ-IDPQSGDG-IEAEAREKRYRALGEMCRKHDIPLLLTAHHEDD 150
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
Q E +L+L R +GV GL+GM SS + L + ++ L RPLL S+ ++
Sbjct: 151 QVETVLLQLMRGTGVAGLSGMEASSH--------SPELLGDETLFLGRPLLSVSRKELAS 202
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIRMS----LGDLSSCSFKSELQAVISACRRTRSYVE 319
++D +N + RN IR L DL F+ L R +E
Sbjct: 203 WLVEAGITHIDDDSNDDVAYTRNAIRHRLVPVLEDLFP-GFQKRLFRTAQHAGSARRLLE 261
Query: 320 HVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIF 354
V EA T + L +LN +I+++
Sbjct: 262 EVAKKDF-EACTSGKNSLNLEQLRLLNRERIDNLL 295
>gi|431797432|ref|YP_007224336.1| tRNA(Ile)-lysidine synthetase [Echinicola vietnamensis DSM 17526]
gi|430788197|gb|AGA78326.1| tRNA(Ile)-lysidine synthetase [Echinicola vietnamensis DSM 17526]
Length = 440
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 40/208 (19%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GLR-EESKEEANI 142
L +SGG DS+AL L +AG + + H GLR +ES +
Sbjct: 23 LAISGGIDSVALAWLLK-----------KAG------VVFRIAHCNFGLRGKESDGDEAF 65
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V ++G+ + R D G Q AARD+RY F+ + QH + +++AHHA
Sbjct: 66 VKALAENLGVAISVERFDTKGYAASHGVSTQMAARDLRYEWFESLRKQHGLHGIIVAHHA 125
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
DDQ E +L L R +GV G+ GM+ +++ H ++RPLL F++ ++
Sbjct: 126 DDQLETILLNLMRGTGVEGIYGMS---------------EIREH---VIRPLLPFTRGEL 167
Query: 262 YKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ DW ED +N + RN +R
Sbjct: 168 EGFMKREQLDWREDSSNSQSDYKRNFLR 195
>gi|400286572|ref|ZP_10788604.1| tRNA-lysidine synthetase [Psychrobacter sp. PAMC 21119]
Length = 521
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 27/238 (11%)
Query: 53 HAHAVEYLTDMTKYREAFSRRMAMAGLKPH-HRIALGVSGGPDSMALCVLTAGWKTGGFN 111
H + L T EA +A G + H R+ L SGG DS+AL L G
Sbjct: 10 HIEPIAELPIDTHLAEALLTSLAEYGEQLHGRRLWLACSGGRDSLALAALCVQLYHQG-- 67
Query: 112 QNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHL 171
F+ LL V+HGL+ +S A V+ + + C+I+ GH
Sbjct: 68 ----KLPFLPQLL--HVNHGLQADSDAWAKHVADWAAAQKVPCQILHAQ------VDGHD 115
Query: 172 QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231
++AAR RY + + +Q VLL+AHHADDQAE ++RL + +GV GL+GM +I
Sbjct: 116 EQAARLARYGVMRAQL--NQDDVLLLAHHADDQAETVLMRLIQGAGVNGLSGMQ-PWRIQ 172
Query: 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ A H ++L RP L + + Q +++DPTN + VR+ +R
Sbjct: 173 TQNA---------HRMVLWRPWLTVQRASISTYAQRLKLPYIDDPTNDAGDNVRSGLR 221
>gi|372220896|ref|ZP_09499317.1| tRNA(Ile)-lysidine synthase [Mesoflavibacter zeaxanthinifaciens
S86]
Length = 435
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 34/213 (15%)
Query: 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEA 140
H ++ + SGG DS+ L L +D L + ++ LR EES+ +
Sbjct: 18 HSKLLIACSGGLDSVLLAHLCKALH-------------LDFAL-VHCNYKLRGEESEGDE 63
Query: 141 NIVSHRVSDMGIRCEIVRCDW-LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199
V+ + + I R D + G LQ ARD+RY F+++C ++Q +L H
Sbjct: 64 QFVTTLAKSLAVPLYIKRFDTKIIQENASGSLQMIARDLRYTFFEELCTEYQFQFILTGH 123
Query: 200 HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKD 259
HA+D E F++ +R +G+ GL G+ ++ ++RPLL F++
Sbjct: 124 HANDSLETFLINFARGTGLEGLLGVPII------------------NLNIIRPLLPFTRK 165
Query: 260 DMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ W ED +N+S + RN IR ++
Sbjct: 166 ELLSFANAHALSWREDSSNKSDKYKRNTIRNNI 198
>gi|399927790|ref|ZP_10785148.1| tRNA(Ile)-lysidine synthetase [Myroides injenensis M09-0166]
Length = 437
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 32/210 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
R+ L VSGG DS+ LC L K+ N F H +E+S ++ V
Sbjct: 20 RLLLAVSGGIDSVVLCHLC---KSANLNFAIAHCNF----------HLRKEDSNKDQLFV 66
Query: 144 SHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ +G+ + + K +Q AAR++RY F+++ + + LL AHH D
Sbjct: 67 EQLANSLGVSVFVNEFETEKYANDKSISIQIAARELRYGWFEELLNKERYDYLLTAHHLD 126
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262
D E F++ SR +G+ GL G+ N +I +RPLL F++ ++
Sbjct: 127 DSIETFLINFSRGTGLEGLLGIP----------------KVNGNI--IRPLLPFTRAEIL 168
Query: 263 KICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ + DW ED TN+ ++RN+ R+++
Sbjct: 169 EYAEQNEIDWREDYTNKQTKYLRNKFRINV 198
>gi|325681847|ref|ZP_08161366.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus reuteri MM4-1A]
gi|324978938|gb|EGC15886.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
[Lactobacillus reuteri MM4-1A]
Length = 470
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 27/233 (11%)
Query: 61 TDMTKYREAFSRRMAMAGL-KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEF 119
+MT ++AF R + + ++ + VS G DSM L L + Q
Sbjct: 5 ANMTDLQQAFERHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLSSKNRPQ------- 57
Query: 120 IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMR 179
++ ++H LR++S+ E + ++ + D P+ G ++ AAR R
Sbjct: 58 ---IIVAHMNHELRKQSQLEERFIRQYCKQNDLKLAVTHWP-QDLHPQTG-IENAARQAR 112
Query: 180 YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239
Y+ F+KV ++ +LL AHH +D AE +++++R + L G+ + F+S
Sbjct: 113 YQFFRKVMKDNRASILLTAHHQNDLAETMLMKMTRGGQLSQLVGIR-DRRPFASGT---- 167
Query: 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
L+RPLL FSK + K + W ED TN+ RNR R ++
Sbjct: 168 ---------LIRPLLPFSKQQLKKYALQHHLKWYEDKTNKDLNIQRNRFRHAI 211
>gi|29840521|ref|NP_829627.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC]
gi|61216617|sp|Q822B9.1|TILS_CHLCV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
Full=tRNA(Ile)-lysidine synthetase
gi|29834870|gb|AAP05505.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC]
Length = 317
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 34/208 (16%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHR 146
L +SGG DS+ L L K+ G A+ VDHG RE S EA + R
Sbjct: 27 LALSGGSDSLFLLYLL---KSRGV-----------AFTAVHVDHGWRESSYREAEELKIR 72
Query: 147 VSDMGIRCEI--VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204
+ GI I V ++ R + AAR RY LF KVC + + + +AHHA+DQ
Sbjct: 73 CEEEGIPILIDHVPPEYRTSRDPEN----AARRYRYTLFHKVCKEQNLAGIFLAHHANDQ 128
Query: 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
AE + RL + + L GM+ + ++D I L RPLL K + +
Sbjct: 129 AETVLKRLLEGASLSNLKGMS---------PKTSYED-----IPLFRPLLHIPKQIIINV 174
Query: 265 CQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
N V+D TN ++R R+R +
Sbjct: 175 LDAENVPCVQDITNTDERYLRARMRKKI 202
>gi|330443788|ref|YP_004376774.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58]
gi|328806898|gb|AEB41071.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58]
Length = 318
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 125/310 (40%), Gaps = 54/310 (17%)
Query: 59 YLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGE 118
YL K EAF + L LG SGG DS+ L + K
Sbjct: 5 YLLKNDKRLEAF-----FSSLDRKKSYLLGFSGGSDSLFLFYVLKSLKIN---------- 49
Query: 119 FIDGLLAITVDHGLREESKEEANIVS---HR--VSDMGIRCEIVRCDWLDGRPKQGHLQE 173
A+ VDHG RE S+EEA + HR +S +G R D L+
Sbjct: 50 ----FTAVHVDHGWRECSREEAKALKEFCHREKISYIGHRLSPEEKGERD-------LEN 98
Query: 174 AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233
AAR RY F ++C+Q + +AHHA+DQAE + R+ + + L GM SS
Sbjct: 99 AARKARYAFFYQLCVQQNFSGVFLAHHANDQAETLLKRVLEGAHLSNLKGMTVSSFY--- 155
Query: 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS-- 291
+ L+RPLL K + + ++ D TN ++R R+R
Sbjct: 156 -----------QGMQLLRPLLHIPKARLMSLLHREKISYISDETNEDERYLRARMRKKLF 204
Query: 292 --LGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSK 349
L ++ + S L A+ + Y+E +++ QG V+ ++
Sbjct: 205 PWLEEVFGKNISSPLFALAEESKELAEYMESQTEPFLSKVTC--QQGGQVLP---ISKGL 259
Query: 350 IEDIFLSKFL 359
I+ FL+K++
Sbjct: 260 IQQPFLAKYV 269
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,213,035,092
Number of Sequences: 23463169
Number of extensions: 425031274
Number of successful extensions: 887618
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2829
Number of HSP's successfully gapped in prelim test: 1845
Number of HSP's that attempted gapping in prelim test: 876040
Number of HSP's gapped (non-prelim): 5553
length of query: 676
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 526
effective length of database: 8,839,720,017
effective search space: 4649692728942
effective search space used: 4649692728942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)