Query 005804
Match_columns 676
No_of_seqs 413 out of 2564
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 13:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10660 tilS tRNA(Ile)-lysidi 100.0 2.3E-44 4.9E-49 397.3 30.4 288 79-402 12-304 (436)
2 PF01171 ATP_bind_3: PP-loop f 100.0 4E-45 8.7E-50 358.2 19.7 182 84-291 1-182 (182)
3 COG0037 MesJ tRNA(Ile)-lysidin 100.0 2.9E-38 6.4E-43 329.6 27.0 228 64-317 4-235 (298)
4 TIGR02432 lysidine_TilS_N tRNA 100.0 5.2E-37 1.1E-41 300.9 21.3 188 84-294 1-189 (189)
5 PRK10696 tRNA 2-thiocytidine b 100.0 1.8E-36 3.8E-41 313.3 25.9 222 64-311 10-239 (258)
6 PRK00074 guaA GMP synthase; Re 100.0 1.3E-36 2.7E-41 341.7 17.4 228 1-272 129-381 (511)
7 cd01992 PP-ATPase N-terminal d 100.0 4.4E-34 9.5E-39 278.3 21.8 185 84-294 1-185 (185)
8 PLN02347 GMP synthetase 100.0 1.2E-32 2.6E-37 310.2 17.2 233 1-271 142-404 (536)
9 cd01993 Alpha_ANH_like_II This 100.0 5.2E-32 1.1E-36 262.7 17.7 177 84-281 1-183 (185)
10 KOG1622 GMP synthase [Nucleoti 100.0 2.5E-29 5.4E-34 269.3 10.3 236 1-272 144-406 (552)
11 COG0519 GuaA GMP synthase, PP- 99.9 2.5E-27 5.4E-32 242.5 11.8 179 54-272 1-185 (315)
12 PRK00143 mnmA tRNA-specific 2- 99.9 6.7E-25 1.4E-29 236.3 15.8 170 83-286 1-196 (346)
13 TIGR00884 guaA_Cterm GMP synth 99.9 4.5E-24 9.8E-29 226.8 17.2 173 62-272 2-181 (311)
14 cd01997 GMP_synthase_C The C-t 99.9 1.6E-24 3.4E-29 228.7 13.6 165 84-278 1-175 (295)
15 cd01990 Alpha_ANH_like_I This 99.9 1.4E-23 3E-28 208.5 13.0 151 85-280 1-156 (202)
16 PRK00919 GMP synthase subunit 99.9 2.2E-23 4.8E-28 220.9 15.0 170 61-273 6-180 (307)
17 cd01998 tRNA_Me_trans tRNA met 99.9 4.1E-23 9E-28 222.7 15.0 170 84-284 1-195 (349)
18 PRK14665 mnmA tRNA-specific 2- 99.9 6.8E-22 1.5E-26 213.9 15.0 181 78-284 1-195 (360)
19 TIGR00268 conserved hypothetic 99.8 7.8E-21 1.7E-25 196.3 15.0 153 82-280 12-168 (252)
20 PRK08349 hypothetical protein; 99.8 3.1E-20 6.8E-25 185.0 17.8 149 84-273 2-161 (198)
21 cd01712 ThiI ThiI is required 99.8 3.2E-20 7E-25 181.1 17.3 152 84-275 1-161 (177)
22 TIGR00420 trmU tRNA (5-methyla 99.8 4.4E-20 9.5E-25 199.5 14.5 171 83-284 1-198 (352)
23 cd01713 PAPS_reductase This do 99.8 9.1E-20 2E-24 172.5 14.1 152 84-273 1-162 (173)
24 PRK14664 tRNA-specific 2-thiou 99.8 1.4E-19 3E-24 195.9 10.8 175 79-284 2-190 (362)
25 PRK14561 hypothetical protein; 99.8 6.6E-19 1.4E-23 175.7 13.3 149 84-279 2-156 (194)
26 PRK13820 argininosuccinate syn 99.8 1.8E-17 3.9E-22 181.1 17.4 147 82-276 2-167 (394)
27 TIGR00342 thiazole biosynthesi 99.7 1.3E-17 2.9E-22 181.4 15.9 161 79-280 169-339 (371)
28 PF03054 tRNA_Me_trans: tRNA m 99.7 3.3E-18 7.2E-23 184.7 8.0 176 83-284 1-199 (356)
29 PRK08384 thiamine biosynthesis 99.7 9.3E-17 2E-21 175.1 17.2 154 79-277 177-345 (381)
30 TIGR00364 exsB protein. This p 99.7 5.9E-17 1.3E-21 161.6 13.7 149 85-272 1-178 (201)
31 cd01995 ExsB ExsB is a transcr 99.7 1.7E-16 3.6E-21 153.6 14.6 142 84-280 1-148 (169)
32 TIGR00552 nadE NAD+ synthetase 99.7 2.7E-16 6E-21 162.3 16.0 168 64-280 7-187 (250)
33 cd01986 Alpha_ANH_like Adenine 99.7 2E-16 4.4E-21 141.6 12.0 83 85-213 1-83 (103)
34 PRK01565 thiamine biosynthesis 99.7 2.6E-16 5.7E-21 172.6 12.6 160 79-279 173-342 (394)
35 COG1606 ATP-utilizing enzymes 99.7 1.4E-15 3E-20 155.4 15.7 163 68-280 8-174 (269)
36 TIGR00032 argG argininosuccina 99.7 1.4E-15 3E-20 166.6 15.5 148 84-277 1-167 (394)
37 PRK05253 sulfate adenylyltrans 99.6 5.5E-15 1.2E-19 156.8 19.4 173 83-276 28-209 (301)
38 COG0482 TrmU Predicted tRNA(5- 99.6 1.4E-15 3E-20 163.1 14.6 176 82-283 3-196 (356)
39 PRK11106 queuosine biosynthesi 99.6 4.8E-15 1E-19 151.9 14.3 153 83-272 2-180 (231)
40 PRK00509 argininosuccinate syn 99.6 8.9E-15 1.9E-19 160.2 16.1 148 83-276 3-170 (399)
41 PRK01269 tRNA s(4)U8 sulfurtra 99.6 2E-14 4.3E-19 161.6 14.9 160 80-279 175-342 (482)
42 KOG2840 Uncharacterized conser 99.5 1.9E-14 4.2E-19 151.1 8.8 202 75-297 44-258 (347)
43 cd00553 NAD_synthase NAD+ synt 99.5 1.3E-13 2.8E-18 142.3 13.6 160 64-272 8-179 (248)
44 PLN00200 argininosuccinate syn 99.5 2E-13 4.4E-18 149.8 15.5 150 83-277 6-175 (404)
45 PF06508 QueC: Queuosine biosy 99.5 5.9E-14 1.3E-18 141.9 10.0 152 84-274 1-179 (209)
46 PRK13980 NAD synthetase; Provi 99.5 7.6E-13 1.6E-17 138.0 18.2 166 66-280 17-191 (265)
47 cd01999 Argininosuccinate_Synt 99.5 3.3E-13 7E-18 147.7 15.2 146 85-275 1-166 (385)
48 TIGR02039 CysD sulfate adenyly 99.5 1.5E-12 3.3E-17 137.7 19.6 172 83-273 20-198 (294)
49 PRK08576 hypothetical protein; 99.5 6.5E-13 1.4E-17 147.2 16.0 151 83-273 235-388 (438)
50 PRK04527 argininosuccinate syn 99.5 1.9E-13 4.2E-18 149.5 11.0 148 82-276 2-172 (400)
51 cd01996 Alpha_ANH_like_III Thi 99.4 2.7E-13 5.8E-18 129.0 9.6 105 84-204 3-115 (154)
52 KOG2805 tRNA (5-methylaminomet 99.4 2.8E-13 6.1E-18 141.4 10.4 178 81-284 4-205 (377)
53 PRK02090 phosphoadenosine phos 99.4 1.2E-11 2.6E-16 127.4 16.6 145 83-273 41-195 (241)
54 COG0603 Predicted PP-loop supe 99.4 4.6E-12 1E-16 128.5 12.9 158 83-273 3-181 (222)
55 PTZ00323 NAD+ synthase; Provis 99.4 8.3E-12 1.8E-16 132.3 15.2 186 50-280 19-222 (294)
56 PF02568 ThiI: Thiamine biosyn 99.3 7.1E-12 1.5E-16 125.8 12.1 149 82-270 3-161 (197)
57 TIGR03573 WbuX N-acetyl sugar 99.3 1.1E-11 2.4E-16 134.0 12.2 128 60-202 35-171 (343)
58 PRK12563 sulfate adenylyltrans 99.3 8E-11 1.7E-15 125.4 17.8 172 83-273 38-216 (312)
59 PF02540 NAD_synthase: NAD syn 99.2 1.1E-10 2.3E-15 120.8 13.1 159 64-271 3-169 (242)
60 PF01507 PAPS_reduct: Phosphoa 99.1 2E-10 4.4E-15 110.1 9.8 147 85-272 2-155 (174)
61 cd01984 AANH_like Adenine nucl 99.1 1.8E-10 3.8E-15 99.4 7.8 69 85-212 1-69 (86)
62 cd01994 Alpha_ANH_like_IV This 99.0 5E-09 1.1E-13 105.0 16.1 142 84-278 1-146 (194)
63 PRK13794 hypothetical protein; 98.9 1.8E-08 3.9E-13 113.7 16.9 150 82-272 247-404 (479)
64 TIGR00434 cysH phosophoadenyly 98.9 9.1E-09 2E-13 103.7 13.1 148 83-272 14-169 (212)
65 KOG2594 Uncharacterized conser 98.9 3.6E-08 7.8E-13 105.2 17.8 197 60-272 33-265 (396)
66 PRK08557 hypothetical protein; 98.9 3E-08 6.5E-13 110.0 17.3 149 82-272 181-338 (417)
67 TIGR02057 PAPS_reductase phosp 98.9 5.5E-08 1.2E-12 99.7 16.2 150 82-272 25-184 (226)
68 PRK13795 hypothetical protein; 98.9 3.5E-08 7.5E-13 115.0 16.5 151 82-273 243-401 (636)
69 TIGR03679 arCOG00187 arCOG0018 98.9 4.7E-08 1E-12 99.7 14.8 139 86-278 1-144 (218)
70 PRK05370 argininosuccinate syn 98.8 4.1E-08 8.8E-13 108.6 14.5 152 79-275 8-186 (447)
71 PRK00876 nadE NAD synthetase; 98.8 9.5E-08 2.1E-12 103.0 16.7 82 64-161 17-98 (326)
72 PRK02628 nadE NAD synthetase; 98.8 4.4E-08 9.6E-13 114.9 15.4 148 81-269 360-522 (679)
73 COG0301 ThiI Thiamine biosynth 98.8 6.1E-08 1.3E-12 105.9 12.8 150 80-270 173-332 (383)
74 cd01991 Asn_Synthase_B_C The C 98.7 2.6E-08 5.7E-13 102.6 7.8 111 80-205 13-130 (269)
75 COG0175 CysH 3'-phosphoadenosi 98.7 1.7E-07 3.7E-12 98.1 12.9 149 83-272 40-196 (261)
76 PF00764 Arginosuc_synth: Argi 98.7 1.2E-07 2.6E-12 104.0 11.7 146 86-276 1-165 (388)
77 COG0137 ArgG Argininosuccinate 98.6 3.3E-07 7.2E-12 99.3 13.9 149 82-275 4-171 (403)
78 PRK13981 NAD synthetase; Provi 98.6 3.6E-07 7.7E-12 104.5 14.9 161 63-269 260-433 (540)
79 COG2117 Predicted subunit of t 98.6 1.1E-07 2.5E-12 91.9 6.5 165 84-294 2-174 (198)
80 PF00733 Asn_synthase: Asparag 98.5 4E-07 8.7E-12 91.8 10.4 125 65-205 1-134 (255)
81 PRK06850 hypothetical protein; 98.4 6.2E-06 1.3E-10 93.5 17.3 169 81-274 33-225 (507)
82 PRK00768 nadE NAD synthetase; 98.4 2.8E-06 6.1E-11 89.4 13.4 168 70-280 29-211 (268)
83 COG0171 NadE NAD synthase [Coe 98.4 6.3E-06 1.4E-10 86.7 14.3 161 66-271 12-185 (268)
84 TIGR03183 DNA_S_dndC putative 98.4 9E-06 2E-10 91.1 16.3 168 82-273 13-205 (447)
85 TIGR01536 asn_synth_AEB aspara 98.3 1.6E-06 3.5E-11 97.3 9.8 129 63-204 231-369 (467)
86 COG1365 Predicted ATPase (PP-l 98.2 7.6E-06 1.6E-10 82.7 9.1 154 83-290 61-219 (255)
87 TIGR00289 conserved hypothetic 98.1 0.00013 2.8E-09 75.1 15.9 137 84-278 2-142 (222)
88 COG0518 GuaA GMP synthase - Gl 98.0 3E-06 6.4E-11 85.6 3.1 39 1-41 135-173 (198)
89 TIGR02055 APS_reductase thiore 98.0 9.3E-05 2E-09 74.1 13.2 137 92-272 2-148 (191)
90 PLN02549 asparagine synthase ( 97.6 0.00014 3.1E-09 84.2 8.4 130 63-204 207-348 (578)
91 TIGR00424 APS_reduc 5'-adenyly 97.6 0.00098 2.1E-08 75.4 14.2 154 82-273 115-280 (463)
92 TIGR00290 MJ0570_dom MJ0570-re 97.5 0.0023 5E-08 66.0 15.0 139 84-279 2-144 (223)
93 PRK07765 para-aminobenzoate sy 97.4 9.6E-05 2.1E-09 75.3 3.7 53 1-56 130-199 (214)
94 PTZ00077 asparagine synthetase 97.4 0.0011 2.4E-08 77.1 12.2 133 64-204 220-362 (586)
95 TIGR03108 eps_aminotran_1 exos 97.3 0.0011 2.4E-08 77.4 11.4 122 62-204 235-370 (628)
96 TIGR03104 trio_amidotrans aspa 97.3 0.0016 3.5E-08 75.8 12.3 119 66-204 245-376 (589)
97 PRK09431 asnB asparagine synth 97.3 0.003 6.5E-08 73.1 14.1 136 64-204 210-354 (554)
98 PLN02309 5'-adenylylsulfate re 97.3 0.0038 8.1E-08 70.7 13.9 153 82-272 110-274 (457)
99 KOG1706 Argininosuccinate synt 97.2 0.0012 2.6E-08 70.1 9.2 150 82-278 5-178 (412)
100 TIGR00269 conserved hypothetic 97.2 0.00087 1.9E-08 61.1 6.9 58 249-306 3-62 (104)
101 PF01902 ATP_bind_4: ATP-bindi 97.2 0.0026 5.7E-08 65.3 10.6 137 84-278 2-143 (218)
102 PLN02339 NAD+ synthase (glutam 97.2 0.0085 1.8E-07 71.3 16.2 78 81-160 347-448 (700)
103 COG0367 AsnB Asparagine syntha 97.0 0.0048 1E-07 71.3 11.6 127 63-205 212-346 (542)
104 PRK09522 bifunctional glutamin 96.9 0.0037 8E-08 72.0 10.0 53 1-56 131-199 (531)
105 COG3969 Predicted phosphoadeno 96.4 0.0064 1.4E-07 65.7 6.6 169 81-272 26-232 (407)
106 COG2102 Predicted ATPases of P 96.4 0.1 2.2E-06 53.9 14.7 134 84-274 2-140 (223)
107 PRK05665 amidotransferase; Pro 96.0 0.0042 9E-08 64.6 2.6 50 1-52 146-200 (240)
108 PRK07567 glutamine amidotransf 95.3 0.013 2.7E-07 61.0 3.1 52 1-54 150-206 (242)
109 PRK05637 anthranilate synthase 95.0 0.014 3.1E-07 59.3 2.5 40 1-41 142-184 (208)
110 cd01987 USP_OKCHK USP domain i 94.8 0.43 9.3E-06 43.1 11.4 103 84-217 1-107 (124)
111 PRK09065 glutamine amidotransf 94.8 0.022 4.7E-07 59.1 3.2 49 1-51 146-199 (237)
112 PRK07649 para-aminobenzoate/an 94.5 0.024 5.2E-07 57.1 2.6 39 1-41 126-167 (195)
113 KOG0571 Asparagine synthase (g 94.3 0.56 1.2E-05 52.6 12.6 134 60-205 204-347 (543)
114 PRK00758 GMP synthase subunit 94.0 0.035 7.6E-07 54.8 2.6 39 1-41 121-160 (184)
115 KOG0573 Asparagine synthase [A 93.9 0.21 4.5E-06 56.1 8.5 26 83-108 251-276 (520)
116 PRK08007 para-aminobenzoate sy 93.7 0.045 9.7E-07 54.6 2.7 41 1-43 126-169 (187)
117 TIGR00888 guaA_Nterm GMP synth 93.7 0.047 1E-06 54.1 2.8 39 1-41 124-163 (188)
118 CHL00101 trpG anthranilate syn 93.6 0.049 1.1E-06 54.4 2.8 39 1-41 126-168 (190)
119 PF10288 DUF2392: Protein of u 93.5 0.3 6.5E-06 44.7 7.6 58 205-274 2-59 (107)
120 PRK10490 sensor protein KdpD; 93.1 1.1 2.3E-05 55.2 13.7 98 79-203 247-348 (895)
121 TIGR00566 trpG_papA glutamine 92.8 0.079 1.7E-06 52.9 2.9 41 1-43 126-170 (188)
122 PRK07053 glutamine amidotransf 92.6 0.13 2.9E-06 53.3 4.3 37 2-41 140-176 (234)
123 PRK14607 bifunctional glutamin 92.6 0.13 2.7E-06 59.6 4.6 39 1-41 127-168 (534)
124 PRK06490 glutamine amidotransf 92.5 0.098 2.1E-06 54.4 3.3 38 1-41 140-177 (239)
125 PRK05670 anthranilate synthase 92.1 0.11 2.3E-06 51.7 2.9 39 1-41 126-167 (189)
126 PRK08250 glutamine amidotransf 91.6 0.13 2.8E-06 53.4 2.8 46 2-50 142-192 (235)
127 PRK08857 para-aminobenzoate sy 91.5 0.12 2.7E-06 51.6 2.6 40 1-42 126-173 (193)
128 cd01988 Na_H_Antiporter_C The 91.0 3.7 8.1E-05 36.8 11.5 95 84-203 1-106 (132)
129 cd01745 GATase1_2 Subgroup of 90.9 0.12 2.6E-06 51.6 1.7 40 1-42 129-170 (189)
130 cd00293 USP_Like Usp: Universa 90.8 4.3 9.4E-05 35.5 11.5 95 84-204 1-106 (130)
131 PF00117 GATase: Glutamine ami 90.5 0.095 2.1E-06 51.6 0.6 40 1-42 128-172 (192)
132 COG2205 KdpD Osmosensitive K+ 89.4 4.7 0.0001 48.8 13.3 110 80-216 246-364 (890)
133 PLN02335 anthranilate synthase 89.1 0.28 6E-06 50.5 2.7 39 1-41 149-192 (222)
134 PRK06774 para-aminobenzoate sy 88.3 0.36 7.8E-06 48.1 2.9 43 1-43 126-173 (191)
135 PRK11366 puuD gamma-glutamyl-g 87.4 0.31 6.6E-06 51.2 1.8 37 3-41 183-221 (254)
136 PRK06895 putative anthranilate 86.9 0.48 1E-05 47.2 2.8 39 1-41 127-168 (190)
137 cd01989 STK_N The N-terminal d 86.8 6.1 0.00013 36.6 10.0 94 84-202 1-114 (146)
138 PF02677 DUF208: Uncharacteriz 84.6 11 0.00024 37.8 11.1 97 87-197 3-110 (176)
139 PRK09982 universal stress prot 83.2 14 0.00031 34.6 10.8 38 83-130 4-41 (142)
140 PRK15118 universal stress glob 81.8 16 0.00034 33.9 10.5 94 83-201 4-113 (144)
141 COG1636 Uncharacterized protei 79.5 21 0.00046 36.4 10.8 102 82-197 3-116 (204)
142 cd01744 GATase1_CPSase Small c 78.2 1.7 3.7E-05 42.9 2.8 41 2-43 118-161 (178)
143 COG0512 PabA Anthranilate/para 77.1 1.8 3.8E-05 44.0 2.5 37 3-41 130-170 (191)
144 PRK12564 carbamoyl phosphate s 76.3 2.1 4.6E-05 47.4 3.2 38 2-41 297-338 (360)
145 PRK10116 universal stress prot 76.0 36 0.00077 31.3 10.9 101 83-208 4-119 (142)
146 PRK13146 hisH imidazole glycer 73.5 2 4.3E-05 43.7 1.9 39 1-42 150-189 (209)
147 PRK15005 universal stress prot 72.5 22 0.00048 32.7 8.6 21 182-202 98-118 (144)
148 PRK13141 hisH imidazole glycer 72.3 2.4 5.3E-05 42.6 2.2 38 1-41 144-182 (205)
149 TIGR01815 TrpE-clade3 anthrani 72.3 2.9 6.3E-05 50.3 3.2 38 2-41 644-684 (717)
150 KOG0189 Phosphoadenosine phosp 72.0 29 0.00062 36.0 9.6 145 85-272 49-204 (261)
151 TIGR00655 PurU formyltetrahydr 70.4 49 0.0011 35.5 11.6 109 61-202 55-171 (280)
152 PRK13010 purU formyltetrahydro 70.1 59 0.0013 35.1 12.2 115 61-208 65-186 (289)
153 COG0788 PurU Formyltetrahydrof 69.4 77 0.0017 34.1 12.4 107 61-200 62-175 (287)
154 PRK13566 anthranilate synthase 69.2 3.4 7.4E-05 49.8 2.9 38 2-41 654-694 (720)
155 PRK06027 purU formyltetrahydro 68.3 67 0.0015 34.5 12.1 110 59-201 59-175 (286)
156 PRK15456 universal stress prot 67.9 74 0.0016 29.4 11.0 20 183-202 97-116 (142)
157 PRK13011 formyltetrahydrofolat 67.8 86 0.0019 33.8 12.8 110 60-202 60-176 (286)
158 PF00582 Usp: Universal stress 66.8 17 0.00037 31.9 6.2 40 83-132 3-42 (140)
159 KOG2316 Predicted ATPase (PP-l 59.7 1.2E+02 0.0026 32.0 11.3 103 84-208 2-124 (277)
160 PRK11175 universal stress prot 58.6 86 0.0019 32.8 10.7 100 80-203 150-273 (305)
161 PLN02828 formyltetrahydrofolat 56.9 65 0.0014 34.5 9.4 63 81-159 69-131 (268)
162 PTZ00285 glucosamine-6-phospha 56.3 1.3E+02 0.0029 31.4 11.6 103 79-199 29-138 (253)
163 PRK11175 universal stress prot 54.1 1.2E+02 0.0026 31.7 10.9 28 181-208 97-124 (305)
164 TIGR01368 CPSaseIIsmall carbam 52.6 11 0.00025 41.7 3.0 38 2-41 292-334 (358)
165 PRK13143 hisH imidazole glycer 50.8 10 0.00022 38.1 2.2 37 2-41 141-178 (200)
166 PF11734 TilS_C: TilS substrat 49.9 11 0.00024 32.1 1.9 32 641-674 22-53 (74)
167 PLN02889 oxo-acid-lyase/anthra 49.1 16 0.00034 45.4 3.7 20 3-22 222-243 (918)
168 KOG3179 Predicted glutamine sy 47.4 8.7 0.00019 39.6 1.0 37 3-41 154-190 (245)
169 PF04748 Polysacc_deac_2: Dive 46.6 87 0.0019 32.2 8.2 119 59-207 69-190 (213)
170 PLN02617 imidazole glycerol ph 44.7 13 0.00027 43.6 1.9 47 1-50 150-212 (538)
171 PRK12652 putative monovalent c 44.0 3.6E+02 0.0079 30.1 13.0 104 83-202 6-124 (357)
172 cd01400 6PGL 6PGL: 6-Phosphogl 43.6 1.2E+02 0.0025 31.1 8.6 99 82-198 22-126 (219)
173 CHL00188 hisH imidazole glycer 43.2 15 0.00033 37.6 2.0 39 1-42 151-191 (210)
174 cd05565 PTS_IIB_lactose PTS_II 40.4 63 0.0014 29.5 5.3 67 84-158 2-79 (99)
175 TIGR00853 pts-lac PTS system, 38.4 62 0.0013 29.0 5.0 69 83-159 4-83 (95)
176 TIGR00502 nagB glucosamine-6-p 38.2 4.5E+02 0.0097 27.5 12.1 103 80-199 30-138 (259)
177 PRK00955 hypothetical protein; 37.1 2.4E+02 0.0053 33.8 10.9 22 83-104 66-88 (620)
178 PRK07998 gatY putative fructos 36.9 3.6E+02 0.0077 29.2 11.2 20 259-278 189-208 (283)
179 KOG0026 Anthranilate synthase, 36.5 27 0.00059 35.0 2.5 34 6-41 157-193 (223)
180 PF02441 Flavoprotein: Flavopr 36.4 48 0.001 30.9 4.1 27 83-109 1-27 (129)
181 COG0541 Ffh Signal recognition 36.3 4.3E+02 0.0093 30.6 12.1 99 85-211 104-202 (451)
182 PRK11070 ssDNA exonuclease Rec 34.6 4.5E+02 0.0097 31.3 12.5 106 63-203 55-163 (575)
183 PRK00443 nagB glucosamine-6-ph 33.7 3.7E+02 0.0081 27.8 10.6 104 82-200 32-139 (261)
184 PTZ00372 endonuclease 4-like p 33.3 4.2E+02 0.0092 30.3 11.5 97 87-201 137-243 (413)
185 cd01747 GATase1_Glutamyl_Hydro 32.9 30 0.00065 36.9 2.4 47 2-50 160-221 (273)
186 PRK05920 aromatic acid decarbo 32.1 85 0.0018 32.3 5.4 29 82-110 3-31 (204)
187 PRK14004 hisH imidazole glycer 31.7 23 0.0005 36.3 1.2 38 1-42 151-191 (210)
188 PRK01254 hypothetical protein; 31.0 2.5E+02 0.0055 34.1 9.6 110 83-219 92-210 (707)
189 PRK05368 homoserine O-succinyl 30.7 42 0.0009 36.6 3.0 38 2-41 192-234 (302)
190 PRK06852 aldolase; Validated 30.0 3.3E+02 0.0071 29.9 9.7 107 82-200 92-210 (304)
191 PRK05647 purN phosphoribosylgl 29.7 3E+02 0.0065 28.0 8.8 88 83-200 2-89 (200)
192 PF10566 Glyco_hydro_97: Glyco 29.7 82 0.0018 33.9 5.0 86 135-221 29-123 (273)
193 PF13481 AAA_25: AAA domain; P 29.3 1.5E+02 0.0032 28.8 6.4 63 137-201 126-189 (193)
194 PRK06806 fructose-bisphosphate 29.1 6.5E+02 0.014 27.1 11.7 39 83-132 43-85 (281)
195 PRK08227 autoinducer 2 aldolas 29.0 2.5E+02 0.0054 30.1 8.4 98 82-199 74-179 (264)
196 PRK09590 celB cellobiose phosp 28.3 1.7E+02 0.0037 26.9 6.1 83 83-175 2-97 (104)
197 TIGR00421 ubiX_pad polyprenyl 28.3 85 0.0018 31.5 4.6 26 84-109 1-26 (181)
198 PRK07313 phosphopantothenoylcy 28.0 1E+02 0.0022 30.9 5.1 27 83-109 2-28 (182)
199 PRK08305 spoVFB dipicolinate s 27.7 1.1E+02 0.0023 31.4 5.2 29 81-109 4-33 (196)
200 KOG3425 Uncharacterized conser 27.5 2.4E+02 0.0053 27.1 7.0 56 68-135 13-78 (128)
201 TIGR00639 PurN phosphoribosylg 27.5 3.7E+02 0.008 27.1 9.0 89 83-201 1-89 (190)
202 PRK06029 3-octaprenyl-4-hydrox 27.4 1E+02 0.0022 31.2 4.9 25 83-107 2-26 (185)
203 TIGR02113 coaC_strep phosphopa 26.9 1.1E+02 0.0023 30.7 5.0 27 83-109 1-27 (177)
204 PF00448 SRP54: SRP54-type pro 26.4 1.8E+02 0.0039 29.3 6.6 58 85-157 5-62 (196)
205 PRK02122 glucosamine-6-phospha 26.4 5.4E+02 0.012 31.1 11.5 106 80-199 56-166 (652)
206 TIGR01823 PabB-fungal aminodeo 25.8 44 0.00095 40.7 2.4 39 1-41 139-182 (742)
207 KOG3147 6-phosphogluconolacton 25.3 5.6E+02 0.012 27.5 9.9 106 63-180 17-129 (252)
208 PRK07709 fructose-bisphosphate 25.0 9.1E+02 0.02 26.2 12.1 19 259-277 193-211 (285)
209 PF01182 Glucosamine_iso: Gluc 24.1 2.2E+02 0.0047 28.7 6.7 112 66-199 9-130 (199)
210 COG0299 PurN Folate-dependent 24.1 4.8E+02 0.01 27.0 8.9 89 84-202 2-90 (200)
211 PLN02360 probable 6-phosphoglu 23.0 6.1E+02 0.013 26.8 10.1 68 79-154 38-108 (268)
212 PRK13390 acyl-CoA synthetase; 23.0 4.4E+02 0.0095 29.4 9.5 73 63-157 30-102 (501)
213 PF08497 Radical_SAM_N: Radica 23.0 67 0.0014 34.9 2.8 111 83-220 69-188 (302)
214 PF01261 AP_endonuc_2: Xylose 22.8 6E+02 0.013 24.3 9.4 62 137-198 26-91 (213)
215 COG1139 Uncharacterized conser 22.7 7.8E+02 0.017 28.5 11.1 47 248-295 149-196 (459)
216 TIGR01923 menE O-succinylbenzo 22.4 4.8E+02 0.01 28.2 9.5 73 64-158 6-78 (436)
217 cd01399 GlcN6P_deaminase GlcN6 21.9 8.2E+02 0.018 24.5 10.7 67 83-157 19-90 (232)
218 COG2071 Predicted glutamine am 21.8 50 0.0011 34.9 1.6 37 3-41 177-215 (243)
219 PLN02331 phosphoribosylglycina 21.5 3.6E+02 0.0078 27.7 7.7 88 84-201 1-88 (207)
220 cd05564 PTS_IIB_chitobiose_lic 21.5 1.5E+02 0.0033 26.5 4.4 69 84-160 1-80 (96)
221 TIGR00521 coaBC_dfp phosphopan 21.4 1.5E+02 0.0032 33.4 5.3 29 81-109 2-30 (390)
222 PRK12737 gatY tagatose-bisphos 21.2 1.1E+03 0.023 25.6 12.2 10 123-132 76-85 (284)
223 cd00458 SugarP_isomerase Sugar 20.2 6.7E+02 0.014 24.5 9.1 63 82-153 19-84 (169)
No 1
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=100.00 E-value=2.3e-44 Score=397.33 Aligned_cols=288 Identities=24% Similarity=0.303 Sum_probs=225.1
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEE
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR 158 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~ 158 (676)
+.++++|+||||||+|||||++++..+..... + +++.|+|||||+|++|++++++|+++|+++||++++.+
T Consensus 12 l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~-------~--~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 12 LLTSRQILVAFSGGLDSTVLLHLLVQWRTENP-------G--VTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred cCCCCeEEEEecCCHHHHHHHHHHHHHHHhcC-------C--CeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 56789999999999999999999987652211 1 37999999999999999999999999999999999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccc
Q 005804 159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (676)
Q Consensus 159 ~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~ 238 (676)
+++. ....++|+.||..||.+|.+.+.+. ++|+||||.|||+||+|||+.||+|+.||+||++++.+
T Consensus 83 ~~~~---~~~~~~e~~AR~~Ry~~~~~~~~~~--~~l~~aHh~DDq~ET~L~~L~rG~g~~gL~gm~~~~~~-------- 149 (436)
T PRK10660 83 VQLD---QRGLGIEAAARQARYQAFARTLLPG--EVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSPF-------- 149 (436)
T ss_pred Eecc---CCCCCHHHHHHHHHHHHHHHHHHhC--CEEEEcCchHHHHHHHHHHHHcCCChhhccccceeccc--------
Confidence 7643 1234799999999999999999874 68999999999999999999999999999999875421
Q ss_pred cccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhhhhcc---CCCHHHHHHHHHHHHHHHH
Q 005804 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVISACRRTR 315 (676)
Q Consensus 239 ~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~~l~---~~~f~~~L~~~a~~~~~~~ 315 (676)
.++.++|||+.++|+||.+||+.+|++|++|+||+++.|.||+||+.+.|.. +|.+...+.++++.++++.
T Consensus 150 ------~~~~liRPLL~~~k~ei~~ya~~~~l~~~~D~sN~~~~~~RN~iR~~vlP~L~~~~p~~~~~l~r~a~~~~~~~ 223 (436)
T PRK10660 150 ------AGTRLIRPLLARSREELEQYAQAHGLRWIEDDSNQDDRYDRNFLRLRVLPLLQQRWPHFAEATARSAALCAEQE 223 (436)
T ss_pred ------CCCcEeCCCccCCHHHHHHHHHHcCCCEEECCCCCCCccccHHHHHHhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999999999988876 5789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCceeEEeccccCCcchHHHHHHHHHHHHHHHhhCCcccccCchHHHHHHHHhc--CCCCCe
Q 005804 316 SYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRT--FPCKTS 393 (676)
Q Consensus 316 ~~Ld~~~~~ll~~~v~~~~~g~~~ld~~~l~~~~i~~i~l~r~L~~~l~~is~~~~p~r~~~l~~Ll~~l~~--~~~~~~ 393 (676)
+++++.+...+...... .+. +++..|.... ....++++...+.-. ....+....+..++..+.. .+.+..
T Consensus 224 ~~l~~~~~~~~~~~~~~--~~~--l~~~~l~~l~--~~~~~~ll~~~l~~~--~~~~~~~~~l~~~~~~l~~~~~~~~~~ 295 (436)
T PRK10660 224 QLLDELLAEDLAHLQTP--DGT--LSIDPLLAMS--DARRAAILRRWLAGQ--GAPMPSRDQLQRIWQEVALAREDAEPC 295 (436)
T ss_pred HHHHHHHHHHHHHhhcc--CCc--CcHHHHhhCC--HHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHhhccccCCe
Confidence 99998887766654322 222 4544443221 223344454443321 1233444455555554422 123345
Q ss_pred eeecceEEe
Q 005804 394 LTAAGCYLC 402 (676)
Q Consensus 394 ~Tl~Gc~~~ 402 (676)
.+.+|+.+.
T Consensus 296 ~~~~~~~~~ 304 (436)
T PRK10660 296 LRLGAFEIR 304 (436)
T ss_pred EEECCEEEE
Confidence 677888864
No 2
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=100.00 E-value=4e-45 Score=358.21 Aligned_cols=182 Identities=42% Similarity=0.622 Sum_probs=149.3
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
||+||||||+|||+|+++|.++.... + .++.++|||||+|++|.+++++|+++|+.+||++++..+++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~--------~--~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~- 69 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN--------G--IKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED- 69 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT--------T--TEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH-
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc--------C--CCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee-
Confidence 69999999999999999999886542 2 289999999999999999999999999999999999998862
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccccccc
Q 005804 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243 (676)
Q Consensus 164 ~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~ 243 (676)
.....+.|+.||.+||++|.++|+++|+++|+||||+||++||+|||+.+|+|+.||+||+++..+
T Consensus 70 -~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET~l~~l~rg~~~~~l~~~~~~~~~------------- 135 (182)
T PF01171_consen 70 -RKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAETFLMNLLRGSGLRGLAGMPPVSPF------------- 135 (182)
T ss_dssp -CCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHHHHHHHHHT--CCCCC-S-SEEEE-------------
T ss_pred -ecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHHHHHHHHHhccchhhccccccccc-------------
Confidence 223457999999999999999999999999999999999999999999999999999999986532
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHh
Q 005804 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMS 291 (676)
Q Consensus 244 ~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~ 291 (676)
.+++++|||+.++|+||++||+++|+||++||||.++.|.||+||++
T Consensus 136 -~~~~~iRPLl~~~k~ei~~~~~~~~i~~~~D~tN~~~~~~Rn~iR~~ 182 (182)
T PF01171_consen 136 -KGIKLIRPLLYVSKDEIRAYAKENGIPYVEDPTNYDERYKRNRIRNE 182 (182)
T ss_dssp -TTCEEE-GGGCS-HHHHHHHHHHTT-SSBS-CCGGCTTSHHHHHHHT
T ss_pred -cCcccCCcchhCCHHHHHHHHHHCCCcEEECcCCCCCcccHHHHhCc
Confidence 45899999999999999999999999999999999999999999985
No 3
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.9e-38 Score=329.61 Aligned_cols=228 Identities=30% Similarity=0.393 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH
Q 005804 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (676)
Q Consensus 64 ~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V 143 (676)
+.+...+.+.+...... +++|+||||||+||++|+++|+++... .++.++|||||+|+.++.+.+.+
T Consensus 4 ~~~~~~v~~~i~~~~~~-~~~ilVavSGGkDS~~ll~~L~~l~~~------------~~~~a~~Vd~~~~~~~~~~~~~~ 70 (298)
T COG0037 4 EKLERKVKRAIREFNLI-EYKILVAVSGGKDSLALLHLLKELGRR------------IEVEAVHVDHGLRGYSDQEAELV 70 (298)
T ss_pred HHHHHHHHHHHHhcccc-CCeEEEEeCCChHHHHHHHHHHHhccC------------ceEEEEEecCCCCCccchHHHHH
Confidence 45566677777665533 899999999999999999999876432 27899999999999889999999
Q ss_pred HHHHHhcCCeEEEEECccccCCCC--CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCc
Q 005804 144 SHRVSDMGIRCEIVRCDWLDGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGL 221 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~~~~~~~--~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GL 221 (676)
+++|+.+|+++++.+......... ..++|..||.+||++|.+.|+++|+++|+||||+||++||++||+.+|++..++
T Consensus 71 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l 150 (298)
T COG0037 71 EKLCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGLRGL 150 (298)
T ss_pred HHHHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHHHHHcCcHhhHH
Confidence 999999999999988765543222 237999999999999999999999999999999999999999999999998889
Q ss_pred ccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhhhhcc--CCC
Q 005804 222 AGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS--SCS 299 (676)
Q Consensus 222 aGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~~l~--~~~ 299 (676)
.+|++.... .++..++|||+.++++||..|+..+|+||++|+||.+..|.||++|+.+.++. .|.
T Consensus 151 ~~~~~~~~~-------------~~~~~~iRPL~~~~~~ei~~~~~~~~l~~~~d~~n~~~~~~R~~~r~~l~~~~~~~p~ 217 (298)
T COG0037 151 RGMPPKRPF-------------EGGLLIIRPLLYVREKEIELYAKEKGLPYIEDESNYDLRYTRNRIREELLPLEEERPG 217 (298)
T ss_pred hhCCccccc-------------CCCCeeeeecccCCHHHHHHHHHHcCCCEeecCCCCCchhhHHHHHHHHHHHHHhCCC
Confidence 999986532 22227999999999999999999999999999999999999999999999987 466
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005804 300 FKSELQAVISACRRTRSY 317 (676)
Q Consensus 300 f~~~L~~~a~~~~~~~~~ 317 (676)
+...+.+..+........
T Consensus 218 ~~~~~~~~~~~~~~~~~~ 235 (298)
T COG0037 218 LKFSLARAFELLRELRLL 235 (298)
T ss_pred HHHHHHHHHHHhhhhHHh
Confidence 666654444444443333
No 4
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=100.00 E-value=5.2e-37 Score=300.90 Aligned_cols=188 Identities=41% Similarity=0.571 Sum_probs=166.2
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
||+||+|||+||++|++++.++.+.. | .++.++|||||+++.+.++.+.++++|+.+|||++++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~--------~--~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 70 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL--------K--IRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKA 70 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc--------C--CCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchh
Confidence 58999999999999999998875431 1 2689999999999877889999999999999999999887543
Q ss_pred CCC-CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccccccc
Q 005804 164 GRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDL 242 (676)
Q Consensus 164 ~~~-~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~ 242 (676)
..+ ...+.+..||.+||..|.++|+++|+++|++|||+||++||++|++++|.|..|+.||++++..
T Consensus 71 ~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~~------------ 138 (189)
T TIGR02432 71 LAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRIL------------ 138 (189)
T ss_pred hccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHHcCCCcccccCCcccccc------------
Confidence 222 2336899999999999999999999999999999999999999999999999999999875321
Q ss_pred cCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhhhh
Q 005804 243 KNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 294 (676)
Q Consensus 243 ~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~~ 294 (676)
..++.++|||++++|+||++|++++|+||++||||++..|.||+||+.|.|
T Consensus 139 -~~~~~iirPL~~~~k~ei~~~~~~~~lp~~~~~~~~~~~~~R~~~r~~~~p 189 (189)
T TIGR02432 139 -GNGGQIIRPLLGISKSEIEEYLKENGLPWFEDETNQDDKYLRNRIRHELLP 189 (189)
T ss_pred -CCCCEEECCCCCCCHHHHHHHHHHcCCCeeeCCCCCCCcccHHHHHHHhCC
Confidence 226789999999999999999999999999999999999999999999876
No 5
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=100.00 E-value=1.8e-36 Score=313.28 Aligned_cols=222 Identities=15% Similarity=0.192 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHH
Q 005804 64 TKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (676)
Q Consensus 64 ~~~~~~~~~~i~~~~-i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~ 142 (676)
+.+.+.+.+.+.+.. +.++++|+||+|||+||+||+++++++...+ ++.+++.++|||||+++.+ .+.
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~--------~~~~~l~av~vd~g~~~~~---~~~ 78 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRA--------PINFELVAVNLDQKQPGFP---EHV 78 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhC--------CCCeEEEEEEecCCCCCCC---HHH
Confidence 446666777777764 8899999999999999999999998875432 2234899999999998643 235
Q ss_pred HHHHHHhcCCeEEEEECccccC----CCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCC
Q 005804 143 VSHRVSDMGIRCEIVRCDWLDG----RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV 218 (676)
Q Consensus 143 V~~l~~~LGI~~~iv~~~~~~~----~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~ 218 (676)
++++|+++||++++++.++... .+...++|..|+.+||.+|.++|+++|+++|++|||+||++||++|++.||+|
T Consensus 79 ~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~- 157 (258)
T PRK10696 79 LPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGK- 157 (258)
T ss_pred HHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCc-
Confidence 7899999999999988664221 11223689999999999999999999999999999999999999999999975
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCC-CCCCCchhHHHHHHhhhhcc-
Q 005804 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDP-TNRSPLFVRNRIRMSLGDLS- 296 (676)
Q Consensus 219 ~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDp-SN~d~~y~RNrIR~~L~~l~- 296 (676)
++||++... ...+++.++|||+.++|+||++|++++|+||++++ ||.+..|.||++|+.|..+.
T Consensus 158 --l~~m~~~~~------------~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~~~~~~~~~~~~~R~~ir~~l~~L~~ 223 (258)
T PRK10696 158 --LKAMPPKLL------------SDDGKHIVIRPLAYVAEKDIIKFAEAKEFPIIPCNLCGSQENLQRQVVKEMLRDWEK 223 (258)
T ss_pred --ccccCCeee------------cCCCceeEEecCccCCHHHHHHHHHHcCCCEeeCCCCCCCchhHHHHHHHHHHHHHH
Confidence 566765321 12345789999999999999999999999999766 68899999999996665554
Q ss_pred -CCCHHHHHHHHHHHH
Q 005804 297 -SCSFKSELQAVISAC 311 (676)
Q Consensus 297 -~~~f~~~L~~~a~~~ 311 (676)
+|++..++.+.....
T Consensus 224 ~~P~~~~~i~~~~~~~ 239 (258)
T PRK10696 224 EYPGRIETMFRALQNV 239 (258)
T ss_pred HCccHHHHHHHHHhhc
Confidence 466766665554433
No 6
>PRK00074 guaA GMP synthase; Reviewed
Probab=100.00 E-value=1.3e-36 Score=341.72 Aligned_cols=228 Identities=19% Similarity=0.176 Sum_probs=182.7
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhhhhccCCCCCCCccccHHH
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTK 65 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~ 65 (676)
|+|+|.|.++|++|+++|+|++++++ ++.+++ ++||+|| +||++.+|+|+++|+ +..++++
T Consensus 129 ~~H~d~V~~lp~g~~vlA~s~~~~v~--ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~--~~~~~~~ 204 (511)
T PRK00074 129 MSHGDKVTELPEGFKVIASTENCPIA--AIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWT--MENFIEE 204 (511)
T ss_pred EECCeEEEecCCCcEEEEEeCCCCEE--EEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCcc--HHHHHHH
Confidence 78999999999999999999999999 998766 9999999 999999999999999 5545555
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~ 145 (676)
..+.+++.++. ++|+||+|||+||+++++++++..+. ++.|+|||||++. ..|.+.+.+
T Consensus 205 ~~~~l~~~v~~------~~vlva~SGGvDS~vll~ll~~~lg~-------------~v~av~vd~g~~~--~~e~~~~~~ 263 (511)
T PRK00074 205 AIEEIREQVGD------KKVILGLSGGVDSSVAAVLLHKAIGD-------------QLTCVFVDHGLLR--KNEAEQVME 263 (511)
T ss_pred HHHHHHHhcCC------CcEEEEeCCCccHHHHHHHHHHHhCC-------------ceEEEEEeCCCCC--HHHHHHHHH
Confidence 55555554443 89999999999999999999875422 6899999999853 345566665
Q ss_pred -HHHhcCCeEEEEECccccCCCCC--CChHHHH---HHHHHHHHHHHHHHc-CCCEEeeccccchhHHHHHHHhhcCCCC
Q 005804 146 -RVSDMGIRCEIVRCDWLDGRPKQ--GHLQEAA---RDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSGV 218 (676)
Q Consensus 146 -l~~~LGI~~~iv~~~~~~~~~~~--gn~E~~A---R~iRY~~L~~~A~e~-g~~~LatGHhaDDqaET~LmrL~RGsG~ 218 (676)
+|+++||++++++++..+..... .+++.++ ....|.+|.++|+++ |+++|+||||+||++||.+|+ +++++
T Consensus 264 ~~a~~lgi~~~vvd~~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~--~~~~i 341 (511)
T PRK00074 264 MFREHFGLNLIHVDASDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTK--KAATI 341 (511)
T ss_pred HHHHHcCCcEEEEccHHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhhhhcCCC--Ccccc
Confidence 77999999999998764432211 2444433 344588999999999 999999999999999998876 44444
Q ss_pred C---CcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 219 L---GLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 219 ~---GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
. ++.||+.. ....++|||++++|+||++|++++|+||
T Consensus 342 k~~~~l~Gl~~~-----------------~~~~ii~PL~~l~K~EIr~~a~~~gLp~ 381 (511)
T PRK00074 342 KSHHNVGGLPED-----------------MKLKLVEPLRELFKDEVRKLGLELGLPE 381 (511)
T ss_pred ccccCccCcChh-----------------HhcccccchhhcCHHHHHHHHHHcCCCH
Confidence 3 45555542 2345999999999999999999999994
No 7
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=100.00 E-value=4.4e-34 Score=278.32 Aligned_cols=185 Identities=42% Similarity=0.615 Sum_probs=161.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
||+||+|||+||+++++++.++.... ..++.++|||||++..+.++.+.+.++|+.+|++++++....
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~----------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 68 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL----------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVAL-- 68 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc----------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecc--
Confidence 58999999999999999998765431 137899999999987777899999999999999999883211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccccccc
Q 005804 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLK 243 (676)
Q Consensus 164 ~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~ 243 (676)
......+++..||.+||+.|.++|+++|+++|++|||+||++||+++++.+|.|..++.+++.. ..
T Consensus 69 ~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~--------------~~ 134 (185)
T cd01992 69 APKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPAR--------------IP 134 (185)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcc--------------cC
Confidence 1122347899999999999999999999999999999999999999999999998888777532 22
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhhhh
Q 005804 244 NHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGD 294 (676)
Q Consensus 244 ~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~~ 294 (676)
..++.++|||++++|+||++|++++|+||++||||++..|.||+||+.|.|
T Consensus 135 ~~~~~virPl~~~~k~eI~~~~~~~~l~~~~~~~~~~~~~~r~~~r~~~~~ 185 (185)
T cd01992 135 FGGGRLIRPLLGITRAEIEAYLRENGLPWWEDPSNEDPRYTRNRIRHELLP 185 (185)
T ss_pred CCCCeEECCCCCCCHHHHHHHHHHcCCCeEECCCCCCCcccHHHHHHhhCC
Confidence 456789999999999999999999999999999999999999999999865
No 8
>PLN02347 GMP synthetase
Probab=100.00 E-value=1.2e-32 Score=310.24 Aligned_cols=233 Identities=15% Similarity=0.109 Sum_probs=191.9
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhhhhccCCCCCCCccccHHH
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTK 65 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~ 65 (676)
|+|||.|.++|++|.++|+|+.++++ ++.+++ ++||+|| +||++.+|+|+++|+ +..++++
T Consensus 142 ~~Hsd~V~~lP~g~~vlA~s~~~~ia--ai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~--~~~~~~~ 217 (536)
T PLN02347 142 MSHGDEAVKLPEGFEVVAKSVQGAVV--AIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWK--MQDVLEE 217 (536)
T ss_pred EEEEEEeeeCCCCCEEEEEeCCCcEE--EEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcC--cchHHHH
Confidence 78999999999999999999999998 998876 9999999 899999999999999 8888888
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH-H
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV-S 144 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V-~ 144 (676)
..+.+++.++. .++|+||+|||+||+++|++++++.+. +++|+|||+|+.+ ..|.+.+ +
T Consensus 218 ~i~~i~~~~~~-----~~~vvvalSGGVDSsvla~l~~~alG~-------------~v~av~id~g~~~--~~E~~~~~~ 277 (536)
T PLN02347 218 QIELIKATVGP-----DEHVICALSGGVDSTVAATLVHKAIGD-------------RLHCVFVDNGLLR--YKEQERVME 277 (536)
T ss_pred HHHHHHHHhcc-----CCeEEEEecCChhHHHHHHHHHHHhCC-------------cEEEEEEeCCCCC--hhHHHHHHH
Confidence 88888877764 388999999999999999999886543 6899999999954 3345555 6
Q ss_pred HHHHhcCCeEEEEECccccCCCCC--CChHHHHHHHHH---HHHHHHHHH----cC--CCEEeeccccchhHHHHHHHhh
Q 005804 145 HRVSDMGIRCEIVRCDWLDGRPKQ--GHLQEAARDMRY---RLFQKVCIQ----HQ--IGVLLIAHHADDQAELFILRLS 213 (676)
Q Consensus 145 ~l~~~LGI~~~iv~~~~~~~~~~~--gn~E~~AR~iRY---~~L~~~A~e----~g--~~~LatGHhaDDqaET~LmrL~ 213 (676)
.+|+++||++++++++..+..... .|+|++|+.++. ..|.+.+++ +| +++|++|+++||.+|+.. |
T Consensus 278 ~~a~~lgi~~~vvd~~e~fl~~l~~~~~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~-r-- 354 (536)
T PLN02347 278 TFKRDLHLPVTCVDASERFLSKLKGVTDPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCP-P-- 354 (536)
T ss_pred HHHHHcCCcEEEEeCcHHHHhhCCCCCChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccC-C--
Confidence 699999999999999876654422 289999887777 667766643 34 489999999999999721 1
Q ss_pred cCCC---CCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc
Q 005804 214 RNSG---VLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271 (676)
Q Consensus 214 RGsG---~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp 271 (676)
.|.+ ..++++++++.++ +......++.||.+++|+|||++++++|+|
T Consensus 355 ~g~~~~~~~~ik~hhn~~~l-----------~~~~~~~ii~PL~~l~K~eVR~la~~lgl~ 404 (536)
T PLN02347 355 PGSGRTHSHTIKSHHNVGGL-----------PKDMKLKLIEPLKLLFKDEVRKLGRLLGVP 404 (536)
T ss_pred CCCccccccceeeecccccC-----------hHHHHCccccchhhCcHHHHHHHHHHcCCC
Confidence 1221 4578899998765 233445799999999999999999999998
No 9
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.98 E-value=5.2e-32 Score=262.66 Aligned_cols=177 Identities=21% Similarity=0.243 Sum_probs=149.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
||+||+|||+||++|++++.++.... ++..++.++|||||.+..+.++.+.++++|+++|+++++++.+..+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRY--------PYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhc--------CCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhc
Confidence 58999999999999999998875431 1123789999999998777889999999999999999999886321
Q ss_pred ------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccc
Q 005804 164 ------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (676)
Q Consensus 164 ------~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~ 237 (676)
..+...+.+..|+.+||.++.+.|+++|+++|++|||+||++||++|++.+|+|..++.+++..
T Consensus 73 ~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l~~~~~g~~~~~~~~~~~~---------- 142 (185)
T cd01993 73 TDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAETLLMNLLRGGILRLMRPGPIL---------- 142 (185)
T ss_pred chhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHHhcCHHHHcCCCCcc----------
Confidence 1122336788899999999999999999999999999999999999999999987777766520
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCC
Q 005804 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP 281 (676)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~ 281 (676)
.....++.++|||++++|+||++|++.+|+||++|+||.+.
T Consensus 143 ---~~~~~~~~iirPL~~~~k~eI~~~~~~~~l~~~~d~~~~~~ 183 (185)
T cd01993 143 ---YLDEGDVTRIRPLVYVREKEIVLYAELNGLPFVEEECPYAG 183 (185)
T ss_pred ---ccCCCCceEEeecccCCHHHHHHHHHHcCCCcccCCCCCCC
Confidence 02345678999999999999999999999999999999864
No 10
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.5e-29 Score=269.26 Aligned_cols=236 Identities=17% Similarity=0.152 Sum_probs=198.2
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhhhhccCCCCCCCccccHHH
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTK 65 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~ 65 (676)
|||||+++++|.+|+|+|.+.+.|+| +..++. ++||+|| +||++.+|+|.++|+ +...+++
T Consensus 144 ltHgdsl~~v~~g~kv~a~s~n~~va--~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~t--menre~e 219 (552)
T KOG1622|consen 144 LTHGDSLSKVPEGFKVVAFSGNKPVA--GILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFT--MENREEE 219 (552)
T ss_pred eccccchhhccccceeEEeecCccee--eehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcc--hhhhhHH
Confidence 89999999999999999999999999 998888 9999999 999999999999999 8888888
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~ 145 (676)
-+..+++.++. .+|++++|||+||+|++.|+.++++-+ +++|+|||+|+ .+..|++.|++
T Consensus 220 ~I~~i~k~vG~------~~Vl~~vSGgvdStV~a~Ll~~alg~~------------R~~ai~vdNG~--mrk~Ea~~V~~ 279 (552)
T KOG1622|consen 220 CINEIRKWVGD------YKVLVAVSGGVDSTVCAALLRRALGPD------------RVHAIHVDNGF--MRKKEAEQVEK 279 (552)
T ss_pred HHHHHHHHhcc------cceEEEecCCchHHHHHHHHHHhhCCC------------ceEEEEecccc--hhhhHHHHHHH
Confidence 88888888885 789999999999999999998877532 78999999998 67889999999
Q ss_pred HHHhcCCeEEEEECccccCCCCCC--ChHHHHHHHHHHH---HHHHHHHcC------CCEEeeccccchhHHHHHHHhhc
Q 005804 146 RVSDMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRL---FQKVCIQHQ------IGVLLIAHHADDQAELFILRLSR 214 (676)
Q Consensus 146 l~~~LGI~~~iv~~~~~~~~~~~g--n~E~~AR~iRY~~---L~~~A~e~g------~~~LatGHhaDDqaET~LmrL~R 214 (676)
-..++||++++++....|....++ ++|++.+.+...| +...+.+.. ..++|+|+.++|++|+.. .-
T Consensus 280 tl~~lgi~i~v~~as~~f~s~L~~~~dPE~KRkiIG~tfikv~~~~~~~l~~k~~~~~~flaQgtL~Pd~ieS~s---~~ 356 (552)
T KOG1622|consen 280 TLVYLGIPITVVDASETFLSKLKGVTDPEEKRKIIGRTFIKVFDPVASELNKKHGEKESFLAQGTLRPDLIESAS---VY 356 (552)
T ss_pred HHHHcCCceEEeechHHHHHhhcccCCHHHhceecccceeeeCcHHHHHhhhccCccceeeecccccchhhhhcc---cc
Confidence 777799999999998887665544 7899888777655 445554443 248999999999999874 35
Q ss_pred CCC-CCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 215 NSG-VLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 215 GsG-~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
|+| ...+..++++..+.. . -+...++++||.++.|+|++..++.+|+|-
T Consensus 357 g~~~a~tIKThhn~~~L~r-~--------lrklgK~ieplk~~~kDEvr~lgk~lGlp~ 406 (552)
T KOG1622|consen 357 GSGHAETIKTHHNDTGLIR-D--------LRKLGKVIEPLKDFHKDEVRELGKDLGLPE 406 (552)
T ss_pred CCchhhhhhcccccchHHH-H--------HHHhcccCchhHHHHHHHHHHhhhhcCCch
Confidence 554 456788888765521 0 011237999999999999999999999985
No 11
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.94 E-value=2.5e-27 Score=242.55 Aligned_cols=179 Identities=18% Similarity=0.152 Sum_probs=159.7
Q ss_pred CCCCCccccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC
Q 005804 54 AHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (676)
Q Consensus 54 ~w~~~~~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR 133 (676)
.|+ +..++++.++.++++++. +++++|+|||+||++++.|+++++++ +++||+|||||
T Consensus 1 ~w~--~~~~ie~~i~~ir~~vg~------~kvi~alSGGVDSsv~a~L~~~AiGd-------------~l~cvfVD~GL- 58 (315)
T COG0519 1 MWT--MENFIEEAIEEIREQVGD------GKVILALSGGVDSSVAAVLAHRAIGD-------------QLTCVFVDHGL- 58 (315)
T ss_pred CCC--HHHHHHHHHHHHHHHhCC------ceEEEEecCCCcHHHHHHHHHHHhhc-------------ceEEEEecCCc-
Confidence 488 888888999999998886 89999999999999999999998876 79999999998
Q ss_pred CCcHHHHHHHHHHHH-hcCCeEEEEECccccCCCCCC--ChHHHHHHHHHHH---HHHHHHHcCCCEEeeccccchhHHH
Q 005804 134 EESKEEANIVSHRVS-DMGIRCEIVRCDWLDGRPKQG--HLQEAARDMRYRL---FQKVCIQHQIGVLLIAHHADDQAEL 207 (676)
Q Consensus 134 ~eS~~Eae~V~~l~~-~LGI~~~iv~~~~~~~~~~~g--n~E~~AR~iRY~~---L~~~A~e~g~~~LatGHhaDDqaET 207 (676)
.+..|.+.|.+... .+|+++.++++...|.....| ++|++.+.++..| |++.|+++++++|++|+.|+|++|+
T Consensus 59 -lR~~E~e~V~~~f~~~~~~nl~~VdA~~~Fl~~L~GvtDPE~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES 137 (315)
T COG0519 59 -LRKGEAEQVVEMFREHLGLNLIVVDAKDRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIES 137 (315)
T ss_pred -ccCCcHHHHHHHHHhhcCCceEEEchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeee
Confidence 67788899999555 599999999998888766555 7999998888766 8999999999999999999999998
Q ss_pred HHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 208 FILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 208 ~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
. .|.+ .+++++|+++++ |+++.+++++||.+++|+|+|++++++|+|-
T Consensus 138 ~-----~g~~-~~IKSHHNVGGL-----------P~~m~lkLvEPLr~LfKDEVR~lg~~LGlp~ 185 (315)
T COG0519 138 G-----TGKA-GTIKSHHNVGGL-----------PEDMKLKLVEPLRELFKDEVRELGRELGLPE 185 (315)
T ss_pred c-----CCCC-CccccccccCCC-----------ccccceeeeHHHHHHhHHHHHHHHHHhCCCH
Confidence 7 5555 889999999987 7888999999999999999999999999984
No 12
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.92 E-value=6.7e-25 Score=236.33 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=139.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC--------CcHHHHHHHHHHHHhcCCeE
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE--------ESKEEANIVSHRVSDMGIRC 154 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~--------eS~~Eae~V~~l~~~LGI~~ 154 (676)
.+|+||+|||+||++++++|.+. ++ ++.++|+|++.+. .+.+|.+.++++|+++|||+
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~---G~-----------~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~ 66 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ---GY-----------EVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPH 66 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc---CC-----------cEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcE
Confidence 37999999999999999998652 32 6899999998653 25788999999999999999
Q ss_pred EEEECccccC------------CCCCCChHHHHH-HHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCC-
Q 005804 155 EIVRCDWLDG------------RPKQGHLQEAAR-DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLG- 220 (676)
Q Consensus 155 ~iv~~~~~~~------------~~~~gn~E~~AR-~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~G- 220 (676)
+++++...+. .....+++..|. .+||.+|.++|+++|+++||||||+||++|| +|.||.+..+
T Consensus 67 ~vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~~~---~L~rg~d~~kD 143 (346)
T PRK00143 67 YVVDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRDGR---ELLRGVDPNKD 143 (346)
T ss_pred EEEeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccccc---eEEEccCCCcC
Confidence 9999854321 112236777765 5899999999999999999999999999988 8999988766
Q ss_pred ----cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHH
Q 005804 221 ----LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRN 286 (676)
Q Consensus 221 ----LaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RN 286 (676)
|.+++. .....+++||.+++|+||++||+++|+||.++|++++.+|..+
T Consensus 144 qsy~l~~l~~-----------------~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~ 196 (346)
T PRK00143 144 QSYFLYQLTQ-----------------EQLAKLLFPLGELTKPEVREIAEEAGLPVAKKKDSQGICFIGE 196 (346)
T ss_pred hhhhhccCCH-----------------HHhcceeccCccCCHHHHHHHHHHcCCCcCCCCCCCcccCCCc
Confidence 444431 1123699999999999999999999999999999999888654
No 13
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.91 E-value=4.5e-24 Score=226.82 Aligned_cols=173 Identities=18% Similarity=0.150 Sum_probs=129.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHH
Q 005804 62 DMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141 (676)
Q Consensus 62 ~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae 141 (676)
++++..+.+++.++. ++|+||+|||+||++|++++++..+. +++|+|||||+++ ..|.+
T Consensus 2 ~~~~~~~~l~~~v~~------~kVvValSGGVDSsvla~ll~~~~G~-------------~v~av~vd~G~~~--~~E~e 60 (311)
T TIGR00884 2 FIEEAVEEIREQVGD------AKVIIALSGGVDSSVAAVLAHRAIGD-------------RLTCVFVDHGLLR--KGEAE 60 (311)
T ss_pred hHHHHHHHHHHHhCC------CcEEEEecCChHHHHHHHHHHHHhCC-------------CEEEEEEeCCCCC--hHHHH
Confidence 355666777766654 89999999999999999999875432 7999999999974 35666
Q ss_pred HHHHHH-HhcCCeEEEEECccccCCCC--CCChHHH---HHHHHHHHHHHHHHHcC-CCEEeeccccchhHHHHHHHhhc
Q 005804 142 IVSHRV-SDMGIRCEIVRCDWLDGRPK--QGHLQEA---ARDMRYRLFQKVCIQHQ-IGVLLIAHHADDQAELFILRLSR 214 (676)
Q Consensus 142 ~V~~l~-~~LGI~~~iv~~~~~~~~~~--~gn~E~~---AR~iRY~~L~~~A~e~g-~~~LatGHhaDDqaET~LmrL~R 214 (676)
.+.+.+ +++||+++++++++.+.... ..+++.. +...+|.+|.++|+++| +++|++|||+||++|+..
T Consensus 61 ~~~~~~~~~lgi~~~vvd~~e~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~----- 135 (311)
T TIGR00884 61 QVVKTFGDRLGLNLVYVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAA----- 135 (311)
T ss_pred HHHHHHHHHcCCcEEEEeCcHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhcc-----
Confidence 676654 58999999999886543321 2244543 44567889999999999 999999999999999863
Q ss_pred CCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 215 NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 215 GsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
|. ...++.++++.++ +......+++||++++|+||+++++++|+|+
T Consensus 136 G~-~~~iks~~~~~gl-----------~~~~~~~ii~PL~~l~K~EVr~la~~lgLp~ 181 (311)
T TIGR00884 136 GT-AHVIKSHHNVGGL-----------PEDMKLKLVEPLRELFKDEVRKLGKELGLPE 181 (311)
T ss_pred Ch-hHhhhccCccccC-----------ChhhcCceEEEcccCcHHHHHHHHHHcCCCH
Confidence 21 1124444443322 1223456999999999999999999999993
No 14
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.91 E-value=1.6e-24 Score=228.66 Aligned_cols=165 Identities=19% Similarity=0.110 Sum_probs=128.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWL 162 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~~~ 162 (676)
||+||+|||+||++||+++++..+. +++|+|||||+.+ ..|.+.++++|+++|+ ++++++++..
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~-------------~v~aV~vd~g~~~--~~E~~~~~~~~~~~g~i~~~vvd~~e~ 65 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGD-------------RLTCVFVDNGLLR--KNEAERVEELFSKLLGINLIVVDASER 65 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCC-------------cEEEEEecCCCCC--hHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 5899999999999999999875332 6899999999953 5688999999999886 9999998764
Q ss_pred cCCCC--CCChHHHH---HHHHHHHHHHHHHHcC-CCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccc
Q 005804 163 DGRPK--QGHLQEAA---RDMRYRLFQKVCIQHQ-IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236 (676)
Q Consensus 163 ~~~~~--~gn~E~~A---R~iRY~~L~~~A~e~g-~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~ 236 (676)
+.... ..+++..+ +..+|+.|.++|+++| +++|++|||+||++|+..++.. ...++.++++.++
T Consensus 66 fl~~l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~----~~~IKs~~n~~Gl------ 135 (295)
T cd01997 66 FLSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGS----ADTIKSHHNVGGL------ 135 (295)
T ss_pred HHHHhcCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccc----ccccccccccccc------
Confidence 43222 23566654 4678999999999999 9999999999999999865433 2234455554332
Q ss_pred cccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce---eeCCCC
Q 005804 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW---VEDPTN 278 (676)
Q Consensus 237 ~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~---veDpSN 278 (676)
+......+++||++++|+||+++++++|+|+ ..-|..
T Consensus 136 -----~a~~~~~vi~PL~~l~K~EVR~lar~lGLp~~~~~~~Pfp 175 (295)
T cd01997 136 -----PEDMKLKLIEPLRDLFKDEVRELGRELGLPEEIVERHPFP 175 (295)
T ss_pred -----chHhhCCcccccccCcHHHHHHHHHHcCCCchhhCCCCCC
Confidence 1223457999999999999999999999997 455633
No 15
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.90 E-value=1.4e-23 Score=208.49 Aligned_cols=151 Identities=20% Similarity=0.247 Sum_probs=122.2
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc-
Q 005804 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD- 163 (676)
Q Consensus 85 VlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~- 163 (676)
|+||+|||+||+++++++.+.... ++.++|||||.+ +.+|.+.++++|+++|+++++++++...
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~-------------~v~~v~vd~g~~--~~~~~~~~~~~a~~lgi~~~~~~~~~~~~ 65 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGD-------------RVLAVTATSPLF--PRRELEEAKRLAKEIGIRHEVIETDELDD 65 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCC-------------cEEEEEeCCCCC--CHHHHHHHHHHHHHcCCcEEEEeCCcccc
Confidence 689999999999999998764211 589999999986 5678999999999999999999876321
Q ss_pred --CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccccc
Q 005804 164 --GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241 (676)
Q Consensus 164 --~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~ 241 (676)
......+.+..||..||.++.++|+++|+++|++|||+||++|+. . |+...
T Consensus 66 ~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~----------~---~~~~~-------------- 118 (202)
T cd01990 66 PEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR----------P---GLKAL-------------- 118 (202)
T ss_pred HHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC----------h---HHHHH--------------
Confidence 111112445679999999999999999999999999999998831 1 22210
Q ss_pred ccCCCeEEEeeCC--CCCHHHHHHHHHhCCCceeeCCCCCC
Q 005804 242 LKNHSILLVRPLL--DFSKDDMYKICQGGNRDWVEDPTNRS 280 (676)
Q Consensus 242 ~~~~~i~IIRPLL--~lsK~EIr~y~~~~gLp~veDpSN~d 280 (676)
.++.++|||+ .++|+||++|++++|+||++||+|.+
T Consensus 119 ---~~~~iirPL~~~~~~K~ei~~~a~~~gl~~~~~~~~~c 156 (202)
T cd01990 119 ---RELGVRSPLAEAGLGKAEIRELARELGLPTWDKPAMAC 156 (202)
T ss_pred ---HHcCCcCchhhcCCCHHHHHHHHHHcCCCCcCCCCcch
Confidence 1246899999 69999999999999999999999965
No 16
>PRK00919 GMP synthase subunit B; Validated
Probab=99.90 E-value=2.2e-23 Score=220.87 Aligned_cols=170 Identities=21% Similarity=0.199 Sum_probs=129.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHH
Q 005804 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (676)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Ea 140 (676)
.++++..+.++++++. ++|+||+|||+||+++|+++++..+. +++|+|||||++ +.+|.
T Consensus 6 ~~~~~~~~~l~~~~~~------~kVlVa~SGGVDSsvla~la~~~lG~-------------~v~aV~vD~G~~--~~~E~ 64 (307)
T PRK00919 6 KFIEEAIEEIREEIGD------GKAIIALSGGVDSSVAAVLAHRAIGD-------------RLTPVFVDTGLM--RKGET 64 (307)
T ss_pred HHHHHHHHHHHHHhCC------CCEEEEecCCHHHHHHHHHHHHHhCC-------------eEEEEEEECCCC--CHHHH
Confidence 3445555555555433 89999999999999999999875332 799999999996 46789
Q ss_pred HHHHHHHHhcCCeEEEEECccccCCC--CCCChHHH---HHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcC
Q 005804 141 NIVSHRVSDMGIRCEIVRCDWLDGRP--KQGHLQEA---ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215 (676)
Q Consensus 141 e~V~~l~~~LGI~~~iv~~~~~~~~~--~~gn~E~~---AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RG 215 (676)
+.++++|+++ +++.+++++..+... ...+++.. +++.+|.+|.++|+++|+++|++|||+||++|+ +|
T Consensus 65 e~a~~~~~~~-i~~~vvd~~e~fl~~L~~v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~------r~ 137 (307)
T PRK00919 65 ERIKETFSDM-LNLRIVDAKDRFLDALKGVTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIES------EG 137 (307)
T ss_pred HHHHHHHhcc-CCcEEEECCHHHHHhccCCCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhc------cC
Confidence 9999999988 999999887533211 11244443 455678999999999999999999999999997 23
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 216 SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 216 sG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
|+.+++++.++ +....+.+++||++++|+||+++++++|+|+.
T Consensus 138 ----~iks~~nv~gl-----------~~~~~~~Ii~PL~~l~K~EVr~la~~lGLp~~ 180 (307)
T PRK00919 138 ----GIKSHHNVGGL-----------PEGMVLKIVEPLRDLYKDEVREVARALGLPEE 180 (307)
T ss_pred ----ccccccccccc-----------ChhhcCCcccCchhCcHHHHHHHHHHcCCChh
Confidence 24444444332 12234569999999999999999999999975
No 17
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.89 E-value=4.1e-23 Score=222.70 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=139.3
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC------CCcHHHHHHHHHHHHhcCCeEEEE
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR------EESKEEANIVSHRVSDMGIRCEIV 157 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR------~eS~~Eae~V~~l~~~LGI~~~iv 157 (676)
+|+||+|||+||++++++|.+. ++ +++++|+|++.. ..+.+|.+.++++|+++||+++++
T Consensus 1 kVlValSGGvDSsvla~lL~~~---g~-----------~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vv 66 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ---GY-----------EVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVV 66 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc---CC-----------cEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 5899999999999999998652 32 689999999752 246788999999999999999999
Q ss_pred ECccccC------------CCCCCChHHHHH-HHHHHHHHHHHHHcCCCEEeeccccchhHHH-HHHHhhcCCCCCC---
Q 005804 158 RCDWLDG------------RPKQGHLQEAAR-DMRYRLFQKVCIQHQIGVLLIAHHADDQAEL-FILRLSRNSGVLG--- 220 (676)
Q Consensus 158 ~~~~~~~------------~~~~gn~E~~AR-~iRY~~L~~~A~e~g~~~LatGHhaDDqaET-~LmrL~RGsG~~G--- 220 (676)
+++..+. .....+++..|. .+||.+|.++|+++|+++||||||++|+.|+ ..+++.||.+..+
T Consensus 67 d~~~~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqs 146 (349)
T cd01998 67 NFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQS 146 (349)
T ss_pred ECcHHHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcc
Confidence 9864221 112236777765 5799999999999999999999999999998 7788889987554
Q ss_pred --cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchh
Q 005804 221 --LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV 284 (676)
Q Consensus 221 --LaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~ 284 (676)
|.+|+. .....+++||++++|+||++|++++|+|..++|++++.+|.
T Consensus 147 y~L~~~~~-----------------~~l~~ii~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~iCFi 195 (349)
T cd01998 147 YFLSQLSQ-----------------EQLSRLIFPLGDLTKPEVREIAKELGLPVAKKKDSQGICFI 195 (349)
T ss_pred eEeccCCH-----------------HHHhheeecCCCCCHHHHHHHHHHcCCCCCCCCCCCceEEe
Confidence 555542 11236999999999999999999999999999999998875
No 18
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.87 E-value=6.8e-22 Score=213.92 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=140.6
Q ss_pred CCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEE
Q 005804 78 GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIV 157 (676)
Q Consensus 78 ~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv 157 (676)
+++++++|+||+|||+||+++|++|++ .|+ +++++|+|++.+.++.++.+.++++|+++|||++++
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~---~G~-----------~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vv 66 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLE---AGY-----------EVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITY 66 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHH---cCC-----------eEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEE
Confidence 367789999999999999999999975 232 789999998766556778899999999999999999
Q ss_pred ECccccC------------CCCCCChHHHHHH-HHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccc
Q 005804 158 RCDWLDG------------RPKQGHLQEAARD-MRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224 (676)
Q Consensus 158 ~~~~~~~------------~~~~gn~E~~AR~-iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm 224 (676)
+++..+. .....+++..|++ +||.+|.++|+++|+++||||||+.++.++...+|.+|.+.....++
T Consensus 67 d~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSy 146 (360)
T PRK14665 67 DARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSF 146 (360)
T ss_pred ecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceE
Confidence 8863221 1122378887765 88999999999999999999999998777666667787765442221
Q ss_pred cccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC-ceeeCCCCCCCchh
Q 005804 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR-DWVEDPTNRSPLFV 284 (676)
Q Consensus 225 ~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL-p~veDpSN~d~~y~ 284 (676)
+....+....-.++|||.+++|+||+++|++.|+ +..+.+..++.+|.
T Consensus 147 ------------fL~~l~~~~l~~~ifPLg~~~K~eVr~~A~~~gl~~~a~k~eSq~iCF~ 195 (360)
T PRK14665 147 ------------FLWGLRQEILQRMLLPMGGMTKSEARAYAAERGFEKVAKKRDSLGVCFC 195 (360)
T ss_pred ------------EecCCCHHHHhheeccCcCCCHHHHHHHHHHCCCCccCcCCCCCccccC
Confidence 0111111222358999999999999999999998 56788888888884
No 19
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.85 E-value=7.8e-21 Score=196.29 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=120.6
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
.++|+||+|||+||+++++++.+. |. ++.++|+|++. .+.+|.+.++++|+++|+++++++.+.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~---g~-----------~v~av~~~~~~--~~~~e~~~a~~~a~~lgi~~~ii~~~~ 75 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA---GT-----------EVLAITVVSPS--ISPRELEDAIIIAKEIGVNHEFVKIDK 75 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh---CC-----------CEEEEEecCCC--CCHHHHHHHHHHHHHcCCCEEEEEcHH
Confidence 488999999999999999998764 22 68999999986 346688899999999999999998764
Q ss_pred cc--CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccc
Q 005804 162 LD--GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (676)
Q Consensus 162 ~~--~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~ 239 (676)
.. ......+.+..|+..+|..+.++|+++|+++|++|||+||++++- .|+.++..
T Consensus 76 ~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~r----------pg~~a~~~------------- 132 (252)
T TIGR00268 76 MINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHR----------PGYRAVKE------------- 132 (252)
T ss_pred HHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCccccccc----------HHHHHHHH-------------
Confidence 21 111122455678889999999999999999999999999988631 12222211
Q ss_pred ccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeCCCCCC
Q 005804 240 DDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVEDPTNRS 280 (676)
Q Consensus 240 ~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veDpSN~d 280 (676)
. .+++||.+ ++|+||+++++++|+||+++|+|.+
T Consensus 133 -----~--~~~~PL~~~~l~K~eIr~la~~~gl~~~~~ps~~C 168 (252)
T TIGR00268 133 -----F--NGVSPWAEFGITKKEIREIAKSLGISFPDKPSEAC 168 (252)
T ss_pred -----c--CCCCcchhcCCCHHHHHHHHHHcCCCccCCCCCCc
Confidence 1 13599975 7999999999999999999999865
No 20
>PRK08349 hypothetical protein; Validated
Probab=99.85 E-value=3.1e-20 Score=185.04 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=110.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeE---EEEECc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRC---EIVRCD 160 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~---~iv~~~ 160 (676)
|+++++|||+||+++++++.+ .|+ ++.++|+|++. .+.....+.++.+++.+|+++ ++++..
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~---~g~-----------~v~av~~d~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 66 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLR---RGV-----------EVYPVHFRQDE-KKEEKVRELVERLQELHGGKLKDPVVVDAF 66 (198)
T ss_pred cEEEEccCChhHHHHHHHHHH---cCC-----------eEEEEEEeCCH-HHHHHHHHHHHHHHHhcCCCcceEEEEcch
Confidence 689999999999999998864 232 79999999952 112222233333444456876 344321
Q ss_pred ccc-------CC-CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccc
Q 005804 161 WLD-------GR-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (676)
Q Consensus 161 ~~~-------~~-~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~ 232 (676)
... .. ....+++..||.++|.++.++|.++|+++|+||||.||.+++.++++.++..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a~~~l~nl~~~~~--------------- 131 (198)
T PRK08349 67 EEQGPVFEKLRELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVASQTLDNLMVIST--------------- 131 (198)
T ss_pred HHhHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHHhcccc---------------
Confidence 110 00 1123678889999999999999999999999999999999999999888542
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
..++.++|||+.++|+||++|++++|++..
T Consensus 132 -----------~~~i~i~rPL~~~~K~eI~~~a~~~g~~~~ 161 (198)
T PRK08349 132 -----------ATDLPVLRPLIGLDKEEIVKIAKEIGTFEI 161 (198)
T ss_pred -----------ccCCeEEcCCCCCCHHHHHHHHHHcCChhh
Confidence 123579999999999999999999996544
No 21
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.85 E-value=3.2e-20 Score=181.09 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=117.3
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCc--HHHHHHHHHHHHhcCCeEEE--EEC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES--KEEANIVSHRVSDMGIRCEI--VRC 159 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS--~~Eae~V~~l~~~LGI~~~i--v~~ 159 (676)
+|+||+|||+||+++++++.+. |. +++++|+|+|.+... .+++..+.+.+..+++++.+ ++.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~---g~-----------~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 66 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR---GI-----------EVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIF 66 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc---CC-----------eEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 5899999999999999999753 32 789999999997532 23455556666778776653 433
Q ss_pred cc----ccC-CCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccc
Q 005804 160 DW----LDG-RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234 (676)
Q Consensus 160 ~~----~~~-~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~ 234 (676)
+. ... .....+++..||.++|.++.++|+++|+++|++|||+||.+++.++++.....
T Consensus 67 ~~~~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~~----------------- 129 (177)
T cd01712 67 TFFVQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLLVISS----------------- 129 (177)
T ss_pred cHHHHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhhccc-----------------
Confidence 21 101 11223788999999999999999999999999999999999998887765420
Q ss_pred cccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeC
Q 005804 235 AYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVED 275 (676)
Q Consensus 235 ~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veD 275 (676)
..++.++|||++++|+||+++++++|++-+.-
T Consensus 130 ---------~~~~~i~rPl~~~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 130 ---------GTDLPILRPLIGFDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred ---------CCCCeEECCCCCCCHHHHHHHHHHcCCcceec
Confidence 12467999999999999999999999986544
No 22
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.83 E-value=4.4e-20 Score=199.51 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=128.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC--------CcHHHHHHHHHHHHhcCCeE
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE--------ESKEEANIVSHRVSDMGIRC 154 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~--------eS~~Eae~V~~l~~~LGI~~ 154 (676)
++|+||+|||+||+++|+++++ .|+ +++++|+++..+. .+.++.+.++++|+.+|||+
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~---~G~-----------~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~ 66 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ---QGY-----------EVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPL 66 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH---cCC-----------eEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCE
Confidence 4799999999999999999975 232 7999999765431 24568889999999999999
Q ss_pred EEEECccccC------------CCCCCChHHHHH-HHHHHHHHHHHHHc-CCCEEeeccccchhHHHHHHHhhcCCCC--
Q 005804 155 EIVRCDWLDG------------RPKQGHLQEAAR-DMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSGV-- 218 (676)
Q Consensus 155 ~iv~~~~~~~------------~~~~gn~E~~AR-~iRY~~L~~~A~e~-g~~~LatGHhaDDqaET~LmrL~RGsG~-- 218 (676)
++++++..+. .....|++..|+ .+||..|.++|++. |+++||||||++|+-++...++.++.+.
T Consensus 67 ~vid~~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~k 146 (352)
T TIGR00420 67 EKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNK 146 (352)
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCc
Confidence 9998854321 112337888775 56799999999996 9999999999965544333344555431
Q ss_pred ---CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchh
Q 005804 219 ---LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV 284 (676)
Q Consensus 219 ---~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~ 284 (676)
..|++++ ......+++||.+++|+||++|++++|++|.+.|..++.+|.
T Consensus 147 Dqsy~L~~l~-----------------~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~k~~Sq~iCFi 198 (352)
T TIGR00420 147 DQSYFLYHLS-----------------HEQLAKLLFPLGELLKPEVRQIAKNAGLPTAEKKDSQGICFI 198 (352)
T ss_pred CcceecccCC-----------------HHHhhhhcccCCCCCHHHHHHHHHHcCCCCCCCCCCCCeEEe
Confidence 1233221 222345899999999999999999999999999999998864
No 23
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.82 E-value=9.1e-20 Score=172.52 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=123.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
+|+||+|||+||+||++|+.++.... .++.++|+|+|. +..+..++++++|+++|++++++..+...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-----------~~~~~v~~dtg~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 67 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-----------KPVPVIFLDTGY--EFPETYEFVDRVAERYGLPLVVVRPPDSP 67 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-----------cCceEEEeCCCC--CCHHHHHHHHHHHHHhCCCeEEECCCccH
Confidence 58999999999999999998754321 157899999998 57788899999999999999998876432
Q ss_pred C---------C-CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccc
Q 005804 164 G---------R-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (676)
Q Consensus 164 ~---------~-~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~ 233 (676)
. . ....+.+..++.+|+..+.+++++.+.+.+++||++||..|+.+++...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~r~~~~~~~~~----------------- 130 (173)
T cd01713 68 AEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESARRALLPVVWTD----------------- 130 (173)
T ss_pred HHHHHHhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchhhhhCcccccc-----------------
Confidence 1 1 112356777899999999999999999999999999999999987655110
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
....++..++||++++++||++|++.+|+||.
T Consensus 131 --------~~~~~~~~~~Pl~~w~~~di~~~~~~~~l~~~ 162 (173)
T cd01713 131 --------DGKGGILKVNPLLDWTYEDVWAYLARHGLPYN 162 (173)
T ss_pred --------CCCCCcEEEcchhcCCHHHHHHHHHHcCCCCC
Confidence 11235679999999999999999999999984
No 24
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.80 E-value=1.4e-19 Score=195.94 Aligned_cols=175 Identities=12% Similarity=0.113 Sum_probs=132.0
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEE
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR 158 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~ 158 (676)
+.++++|+||+|||+||++++++|++ .|+ +++++|+++. . +|.+.++++|+++||++++++
T Consensus 2 ~~~~~kVlVa~SGGvDSsv~a~lL~~---~G~-----------eV~av~~~~~-~----~e~~~a~~va~~LGI~~~vvd 62 (362)
T PRK14664 2 KESKKRVLVGMSGGIDSTATCLMLQE---QGY-----------EIVGVTMRVW-G----DEPQDARELAARMGIEHYVAD 62 (362)
T ss_pred CCCCCEEEEEEeCCHHHHHHHHHHHH---cCC-----------cEEEEEecCc-c----hhHHHHHHHHHHhCCCEEEEe
Confidence 45678999999999999999998864 232 6899999874 1 244568999999999999999
Q ss_pred CccccC------------CCCCCChHHHHH-HHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccc
Q 005804 159 CDWLDG------------RPKQGHLQEAAR-DMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (676)
Q Consensus 159 ~~~~~~------------~~~~gn~E~~AR-~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~ 225 (676)
++..+. .....|++..|+ .+||.+|.++|++.|+++||||||+++......++|.+|.+...-.+.
T Consensus 63 ~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsy- 141 (362)
T PRK14664 63 ERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSY- 141 (362)
T ss_pred ChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccccCCCeEEEEEcCCCcchHHH-
Confidence 874321 012347888887 579999999999999999999999976544455677788754332210
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce-eeCCCCCCCchh
Q 005804 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW-VEDPTNRSPLFV 284 (676)
Q Consensus 226 ~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~-veDpSN~d~~y~ 284 (676)
+....+.+.--.++.||.+++|+||++||+++|++- .+.+.+++.+|.
T Consensus 142 -----------fl~~l~~~~l~~~ifPLg~~~K~evr~~A~~~gl~~~a~k~dSq~iCFi 190 (362)
T PRK14664 142 -----------FLWRLGQDILRRCIFPLGNYTKQTVREYLREKGYEAKSKEGESMEVCFI 190 (362)
T ss_pred -----------HHHhcCHHHHhHHhccCccCCHHHHHHHHHHcCCCCCCCCCCCCcceee
Confidence 000111112225899999999999999999999997 788999999985
No 25
>PRK14561 hypothetical protein; Provisional
Probab=99.79 E-value=6.6e-19 Score=175.68 Aligned_cols=149 Identities=15% Similarity=0.236 Sum_probs=113.7
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
||+||+|||+||+++++++.++ . ++.++|+|+|.+ .|.+.++++|+.+|+++++++++...
T Consensus 2 kV~ValSGG~DSslll~~l~~~----~-----------~v~a~t~~~g~~----~e~~~a~~~a~~lGi~~~~v~~~~~~ 62 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF----Y-----------DVELVTVNFGVL----DSWKHAREAAKALGFPHRVLELDREI 62 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc----C-----------CeEEEEEecCch----hHHHHHHHHHHHhCCCEEEEECCHHH
Confidence 7999999999999999987543 1 578999999984 36788999999999999999887532
Q ss_pred CCC------CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccc
Q 005804 164 GRP------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (676)
Q Consensus 164 ~~~------~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~ 237 (676)
... ..+.+...+..+++.++...+ .|+++|++|||.||.+||++++..++- .
T Consensus 63 ~~~~~~~~~~~~~P~~~~~~l~~~~l~~~a--~g~~~Ia~G~n~DD~~et~~r~~~~a~--------~------------ 120 (194)
T PRK14561 63 LEKAVDMIIEDGYPNNAIQYVHEHALEALA--EEYDVIADGTRRDDRVPKLSRSEIQSL--------E------------ 120 (194)
T ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHH--cCCCEEEEEecCCCcchhccHHHHhhh--------h------------
Confidence 100 011223334578888888877 899999999999999999998865532 1
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCC
Q 005804 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279 (676)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~ 279 (676)
+..++.++|||+.++|+||+++++++ +...+-+|+.
T Consensus 121 -----~~~gi~iirPL~~~~K~eI~~la~~l-~~~~~~~~~~ 156 (194)
T PRK14561 121 -----DRKGVQYIRPLLGFGRKTIDRLVERL-FEIEEGESEE 156 (194)
T ss_pred -----cCCCcEEEeeCCCCCHHHHHHHHHhh-EEEEeccCCC
Confidence 12356799999999999999999986 3344455554
No 26
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.75 E-value=1.8e-17 Score=181.08 Aligned_cols=147 Identities=18% Similarity=0.211 Sum_probs=113.8
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
.++|+||+|||+||+++++++++.. + + .+++|+|+|+|+| .+|.+.++++|+++|+++++++++.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~~--g---------~-~~Viav~vd~g~~---~~e~~~a~~~a~~lGi~~~vvd~~e 66 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEKY--G---------Y-DEVITVTVDVGQP---EEEIKEAEEKAKKLGDKHYTIDAKE 66 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhc--C---------C-CEEEEEEEECCCC---hHHHHHHHHHHHHcCCCEEEEeCHH
Confidence 3789999999999999999986421 1 1 1689999999985 3477889999999999999999864
Q ss_pred ccCC-----------CCCC--ChHHHHHHHHHHHHHHHHHHcCCCEEeeccc--cchhH--HHHHHHhhcCCCCCCcccc
Q 005804 162 LDGR-----------PKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQA--ELFILRLSRNSGVLGLAGM 224 (676)
Q Consensus 162 ~~~~-----------~~~g--n~E~~AR~iRY~~L~~~A~e~g~~~LatGHh--aDDqa--ET~LmrL~RGsG~~GLaGm 224 (676)
.+.. ...+ .....||.+||..|.++|++.|+++||+||+ .+||+ |+.+ ++. +|
T Consensus 67 ef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~----~a~---~l--- 136 (394)
T PRK13820 67 EFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVF----RAS---DL--- 136 (394)
T ss_pred HHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhh----Hhh---cC---
Confidence 3220 0011 3456899999999999999999999999995 55999 6663 222 12
Q ss_pred cccccccccccccccccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeCC
Q 005804 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVEDP 276 (676)
Q Consensus 225 ~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veDp 276 (676)
.++-|+.+ ++|+|+++||+++|||+..++
T Consensus 137 -----------------------~viaP~re~~ltK~ei~~ya~~~gip~~~~~ 167 (394)
T PRK13820 137 -----------------------EVIAPIRELNLTREWEIEYAKEKGIPVPVGK 167 (394)
T ss_pred -----------------------eeeCchhccCCCHHHHHHHHHHcCCCCCcCC
Confidence 24556655 899999999999999996544
No 27
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.75 E-value=1.3e-17 Score=181.40 Aligned_cols=161 Identities=14% Similarity=0.198 Sum_probs=122.1
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhc---C--Ce
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM---G--IR 153 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~L---G--I~ 153 (676)
+..+++++|++|||+||+++++++.+ .|. ++.++|+|+|.. .+.++.+.|+++|+.+ + ++
T Consensus 169 ~g~~~kvlvllSGGiDS~vaa~ll~k---rG~-----------~V~av~~~~~~~-~~~~~~~~v~~l~~~l~~~~~~~~ 233 (371)
T TIGR00342 169 VGTQGKVLALLSGGIDSPVAAFMMMK---RGC-----------RVVAVHFFNEPA-ASEKAREKVERLANSLNETGGSVK 233 (371)
T ss_pred cCcCCeEEEEecCCchHHHHHHHHHH---cCC-----------eEEEEEEeCCCC-ccHHHHHHHHHHHHHHhhcCCCce
Confidence 45668999999999999999999864 232 799999998864 3467788899999887 3 46
Q ss_pred EEEEECccccCC----CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccc
Q 005804 154 CEIVRCDWLDGR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229 (676)
Q Consensus 154 ~~iv~~~~~~~~----~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~ 229 (676)
++++++...... ......+..||+++|.++.++|+++|+++|+||||++|+++++++++. ++..
T Consensus 234 l~~v~~~~~~~~i~~~~~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~---------~i~~--- 301 (371)
T TIGR00342 234 LYVFDFTDVQEEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLR---------VIQA--- 301 (371)
T ss_pred EEEEeCHHHHHHHHhcCCCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHH---------HHhc---
Confidence 666665432110 111245678999999999999999999999999999999998887752 1111
Q ss_pred ccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC-ceeeCCCCCC
Q 005804 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR-DWVEDPTNRS 280 (676)
Q Consensus 230 lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL-p~veDpSN~d 280 (676)
...+.++|||+.++|+||++++++.|. .+...|.+..
T Consensus 302 --------------~~~~~I~rPLi~~~K~EIi~~a~~iG~~~~s~~~~~~c 339 (371)
T TIGR00342 302 --------------VSNTPILRPLIGMDKEEIIELAKEIGTYEISIEPHEDC 339 (371)
T ss_pred --------------cCCCCEEeCCCCCCHHHHHHHHHHhCCcceeecCCCce
Confidence 013469999999999999999999995 3334565533
No 28
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.73 E-value=3.3e-18 Score=184.70 Aligned_cols=176 Identities=16% Similarity=0.164 Sum_probs=110.2
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC-------cHHHHHHHHHHHHhcCCeEE
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-------SKEEANIVSHRVSDMGIRCE 155 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e-------S~~Eae~V~~l~~~LGI~~~ 155 (676)
+||+||+||||||+|+|+||++ +|+ ++++||+.+.--.+ +.++.+.++++|++||||++
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~---~G~-----------~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~ 66 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE---QGY-----------DVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHY 66 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH---CT------------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EE
T ss_pred CeEEEEccCCHHHHHHHHHHHh---hcc-----------cceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEE
Confidence 4899999999999999999964 444 89999998765432 34678899999999999999
Q ss_pred EEECccccCC------------CCCCChHHHH-HHHHHHHHHHHHHH-cCCCEEeeccccchhHH--HHHHHhhcCCCCC
Q 005804 156 IVRCDWLDGR------------PKQGHLQEAA-RDMRYRLFQKVCIQ-HQIGVLLIAHHADDQAE--LFILRLSRNSGVL 219 (676)
Q Consensus 156 iv~~~~~~~~------------~~~gn~E~~A-R~iRY~~L~~~A~e-~g~~~LatGHhaDDqaE--T~LmrL~RGsG~~ 219 (676)
++++...+.. -...||+..| |.+++.+|.+.|.+ +|+++|||||.+.-.-. +--..|.+|....
T Consensus 67 v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r~~D~~ 146 (356)
T PF03054_consen 67 VVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLRGADPK 146 (356)
T ss_dssp EEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE-SSTT
T ss_pred EEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEecCCCC
Confidence 9999764421 1234899887 56999999999999 99999999998753221 2222344443321
Q ss_pred CcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchh
Q 005804 220 GLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV 284 (676)
Q Consensus 220 GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~ 284 (676)
.+ +++++...+...--.++.||-+++|+||+++|++.|++-.+.+.+++.+|.
T Consensus 147 -----KD-------QSYfL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~a~k~eSq~iCFi 199 (356)
T PF03054_consen 147 -----KD-------QSYFLSRLPQEQLSRLIFPLGELTKEEVREIAREAGLPVAEKKESQGICFI 199 (356)
T ss_dssp -----C---------GGGGTT--HHHHCCEE-TCCCS-HHHHHHHHHHCT-TTTT-----SSTTT
T ss_pred -----CC-------ceEEEEecCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcccCccccceEEEe
Confidence 11 122222222233346999999999999999999999998888999998874
No 29
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.72 E-value=9.3e-17 Score=175.10 Aligned_cols=154 Identities=13% Similarity=0.154 Sum_probs=120.4
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcC-------
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG------- 151 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LG------- 151 (676)
+..+.|+++++|||.||+|+++++.+ .|. ++.++|+|+| ....+.|+++|+.++
T Consensus 177 vGs~gkvlvllSGGiDSpVAa~ll~k---rG~-----------~V~~v~f~~g-----~~~~e~v~~la~~L~~~~~~~~ 237 (381)
T PRK08384 177 IGTQGKVVALLSGGIDSPVAAFLMMK---RGV-----------EVIPVHIYMG-----EKTLEKVRKIWNQLKKYHYGGK 237 (381)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHH---cCC-----------eEEEEEEEeC-----HHHHHHHHHHHHHhcccccCCc
Confidence 34458999999999999999999964 343 7999999988 345678889999888
Q ss_pred CeEEEEECccc----c---CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccc
Q 005804 152 IRCEIVRCDWL----D---GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224 (676)
Q Consensus 152 I~~~iv~~~~~----~---~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm 224 (676)
+++++++.... . .....+..+..||..+|..+.++|+++|+++|+|||+++|++++.++|+..-.
T Consensus 238 i~l~~v~~~~~~~v~~~i~~~~~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~-------- 309 (381)
T PRK08384 238 AELIVVKPQERERIIQKLKELKKENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYIVS-------- 309 (381)
T ss_pred ceEEEEChHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHHHh--------
Confidence 56777765310 0 01123457889999999999999999999999999999999999988763211
Q ss_pred cccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC-CceeeCCC
Q 005804 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN-RDWVEDPT 277 (676)
Q Consensus 225 ~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g-Lp~veDpS 277 (676)
...++.++|||..++|+||++++++.| .+...-|.
T Consensus 310 ------------------~~~~lpilRPLi~~dK~EIi~~Ar~iGT~~~s~~~~ 345 (381)
T PRK08384 310 ------------------QASDLPIYRPLIGMDKEEIVAIAKTIGTFELSTLPE 345 (381)
T ss_pred ------------------ccCCCcEEeeCCCCCHHHHHHHHHHcCCcccccCCC
Confidence 112346999999999999999999999 66544444
No 30
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.72 E-value=5.9e-17 Score=161.56 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=110.3
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccccC
Q 005804 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (676)
Q Consensus 85 VlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~ 164 (676)
++|++|||+||+++++++.+. +. ++.++|+|+|.+ ..+|.+.++++|+++|+++++++++....
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~---g~-----------~v~~~~~~~~~~--~~~e~~~a~~~a~~lgi~~~~~~~~~~~~ 64 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDE---GY-----------EVHAITFDYGQR--HSRELESARKIAEALGIEHHVIDLSLLKQ 64 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHc---CC-----------cEEEEEEECCCC--CHHHHHHHHHHHHHhCCCeEEEechhhcc
Confidence 489999999999999988652 22 689999999975 46688999999999999999998874211
Q ss_pred -C--CC---------CCChH----H---HHHHHH-HHHHHHHHHHcCCCEEeeccccchhH------HHHHHHhhcCCCC
Q 005804 165 -R--PK---------QGHLQ----E---AARDMR-YRLFQKVCIQHQIGVLLIAHHADDQA------ELFILRLSRNSGV 218 (676)
Q Consensus 165 -~--~~---------~gn~E----~---~AR~iR-Y~~L~~~A~e~g~~~LatGHhaDDqa------ET~LmrL~RGsG~ 218 (676)
. .. ..+.+ . .+|... +..+..+|+++|++.|++|||.||.+ ++|++++......
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~ 144 (201)
T TIGR00364 65 LGGSALTDESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNL 144 (201)
T ss_pred cccccccCCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHh
Confidence 0 00 00110 0 123333 46778999999999999999999974 6676655543210
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC---Cce
Q 005804 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN---RDW 272 (676)
Q Consensus 219 ~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g---Lp~ 272 (676)
....+++|+|||+.++|.||+++++++| ++|
T Consensus 145 -----------------------~~~~~~~i~~Pl~~~~K~eI~~la~~~g~~~~~~ 178 (201)
T TIGR00364 145 -----------------------GMLTPVKIRAPLMDLTKAEIVQLADELGVLDLVI 178 (201)
T ss_pred -----------------------hcCCCeEEEECCcCCCHHHHHHHHHHcCCccccH
Confidence 0123478999999999999999999999 775
No 31
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.70 E-value=1.7e-16 Score=153.60 Aligned_cols=142 Identities=17% Similarity=0.177 Sum_probs=104.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
||+|++|||+||+++++++.+. +. ++.++|+|+|.++ ..+.+.++++++.+| |...+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~---~~-----------~v~~~~~~~~~~~--~~~~~~~~~~~~~~g-~~~~~~~---- 59 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE---GY-----------EVHALSFDYGQRH--AKEEEAAKLIAEKLG-PSTYVPA---- 59 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc---CC-----------cEEEEEEECCCCC--hhHHHHHHHHHHHHC-CCEEEeC----
Confidence 5899999999999999988642 22 6889999999753 446688999999999 4433321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhH------HHHHHHhhcCCCCCCccccccccccccccccc
Q 005804 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA------ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (676)
Q Consensus 164 ~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa------ET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~ 237 (676)
. ....+.++.++|.++|++.|++|||.||.+ ++++..+.+.. .
T Consensus 60 -----~------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~~~~~~~~~~~~~~---------~----------- 108 (169)
T cd01995 60 -----R------NLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKAL---------N----------- 108 (169)
T ss_pred -----c------CHHHHHHHHHHHHHCCCCEEEEeeccCccCCCCCCCHHHHHHHHHHH---------H-----------
Confidence 0 123457789999999999999999999964 34432211110 0
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCC
Q 005804 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRS 280 (676)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d 280 (676)
.....++.++|||+.++|.||+++++++|+||..+-|-..
T Consensus 109 ---~~~~~~~~v~~PL~~~~K~ei~~~~~~~g~~~~~s~sC~~ 148 (169)
T cd01995 109 ---LGTENGIKIHAPLIDLSKAEIVRLGGELGVPLELTWSCYN 148 (169)
T ss_pred ---hhcCCCeEEEeCcccCCHHHHHHHHhHcCCChhheeeccC
Confidence 0123567899999999999999999999999987655443
No 32
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.70 E-value=2.7e-16 Score=162.30 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH
Q 005804 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (676)
Q Consensus 64 ~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V 143 (676)
+++.+.++..+... ..++|+||+|||+||+++++++.+.... ++++++++++.. .+.+|.+.+
T Consensus 7 ~~l~~~l~~~v~~~---~~~~V~vglSGGiDSsvla~l~~~~~~~-------------~~~~~~~~~~~~-~~~~e~~~a 69 (250)
T TIGR00552 7 EEIEDFLRGYVQKS---GAKGVVLGLSGGIDSAVVAALCVEALGE-------------QNHALLLPHSVQ-TPEQDVQDA 69 (250)
T ss_pred HHHHHHHHHHHHHh---CCCCEEEECCCcHHHHHHHHHHHHhhCC-------------ceEEEEECCccC-CCHHHHHHH
Confidence 44555555555553 3578999999999999999988764321 578899999853 356789999
Q ss_pred HHHHHhcCCeEEEEECccccCC------C--CCC---ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHh
Q 005804 144 SHRVSDMGIRCEIVRCDWLDGR------P--KQG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL 212 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~~~~~------~--~~g---n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL 212 (676)
+++|+.+||++++++++..+.. . ... ..+..|.++|+.+|..+|+++|+.+|+||||.++.
T Consensus 70 ~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~-------- 141 (250)
T TIGR00552 70 LALAEPLGINYKNIDIAPIAASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELM-------- 141 (250)
T ss_pred HHHHHHhCCeEEEEcchHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHh--------
Confidence 9999999999999987643320 0 001 12345567999999999999999999999997542
Q ss_pred hcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce--eeCCCCCC
Q 005804 213 SRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW--VEDPTNRS 280 (676)
Q Consensus 213 ~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~--veDpSN~d 280 (676)
.|.+.. . ......++||.+++|.||+++++.+|+|. .+.|..++
T Consensus 142 -~G~~t~--~---------------------gd~~~~i~PL~~l~K~eV~~lA~~~g~p~~i~~k~psa~ 187 (250)
T TIGR00552 142 -LGYFTK--Y---------------------GDGGCDIAPIGDLFKTQVYELAKRLNVPERIIEKPPTAD 187 (250)
T ss_pred -hCCeec--c---------------------cCCccCccccCCCcHHHHHHHHHHHCccHHHhCCCCCcC
Confidence 121110 0 01224689999999999999999999995 34444444
No 33
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.69 E-value=2e-16 Score=141.62 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=71.3
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccccC
Q 005804 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (676)
Q Consensus 85 VlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~ 164 (676)
|+||+|||+||+++++++.++.. ++.++|+|||++++ .+.++++|++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~--------------~~~~~~~~~~~~~~----~~~~~~~~~~--------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY--------------QVIAVTVDHGISPR----LEDAKEIAKE--------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC--------------CEEEEEEcCCCccc----HHHHHHHHHH---------------
Confidence 68999999999999999976421 58999999999873 3444555554
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhh
Q 005804 165 RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS 213 (676)
Q Consensus 165 ~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~ 213 (676)
.||+.+.++|++.|+++|++|||+||++||.+++..
T Consensus 48 -------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~~~~~~~~ 83 (103)
T cd01986 48 -------------AREEAAKRIAKEKGAETIATGTRRDDVANRALGLTA 83 (103)
T ss_pred -------------HHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHH
Confidence 899999999999999999999999999999999887
No 34
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.67 E-value=2.6e-16 Score=172.60 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=117.3
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcC-----Ce
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG-----IR 153 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LG-----I~ 153 (676)
+..+++++|++|||+||+++++++.+ .|. ++.++|++..- -.+..+.+.+.++|+.++ ++
T Consensus 173 ~g~~gkvvvllSGGiDS~vaa~l~~k---~G~-----------~v~av~~~~~~-~~~~~~~~~~~~~a~~l~~~~~~i~ 237 (394)
T PRK01565 173 VGTSGKALLLLSGGIDSPVAGYLAMK---RGV-----------EIEAVHFHSPP-YTSERAKEKVIDLARILAKYGGRIK 237 (394)
T ss_pred cCCCCCEEEEECCChhHHHHHHHHHH---CCC-----------EEEEEEEeCCC-CCcHHHHHHHHHHHHHHHHhcCCCc
Confidence 45568999999999999999999864 232 78899995421 123556777888888774 99
Q ss_pred EEEEECccccC--CCCCC--ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccc
Q 005804 154 CEIVRCDWLDG--RPKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229 (676)
Q Consensus 154 ~~iv~~~~~~~--~~~~g--n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~ 229 (676)
++++++++... ..... ..+-.+|+++|.++..+|+++|++.|+||||++|++++++.++ .++...
T Consensus 238 ~~vv~~~~~~~~i~~~~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l---------~~i~~~-- 306 (394)
T PRK01565 238 LHVVPFTEIQEEIKKKVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESM---------YAINAV-- 306 (394)
T ss_pred EEEEECHHHHHHHhhcCCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHH---------HHHhhc--
Confidence 99999876421 11111 1123588899999999999999999999999999987654333 223211
Q ss_pred ccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC-ceeeCCCCC
Q 005804 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR-DWVEDPTNR 279 (676)
Q Consensus 230 lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL-p~veDpSN~ 279 (676)
.++.++|||+.++|+||++++++.|. +|...|+..
T Consensus 307 ---------------~~~~V~rPLig~~K~EI~~lAr~iG~~~~s~~p~~~ 342 (394)
T PRK01565 307 ---------------TNLPVLRPLIGMDKEEIIEIAKEIGTYDISILPYED 342 (394)
T ss_pred ---------------cCcEEEECCCCCCHHHHHHHHHHhCCHHHhcCCCcC
Confidence 13579999999999999999999997 443445543
No 35
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.66 E-value=1.4e-15 Score=155.44 Aligned_cols=163 Identities=18% Similarity=0.236 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHH
Q 005804 68 EAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV 147 (676)
Q Consensus 68 ~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~ 147 (676)
+.++..++. ..+++||+|||+||++||.++.+..++ ++.|||||... -...+.+.+..++
T Consensus 8 ~~l~~~ik~-----~~kv~vAfSGGvDSslLa~la~~~lG~-------------~v~AvTv~sP~--~p~~e~e~A~~~A 67 (269)
T COG1606 8 ERLKKAIKE-----KKKVVVAFSGGVDSSLLAKLAKEALGD-------------NVVAVTVDSPY--IPRREIEEAKNIA 67 (269)
T ss_pred HHHHHHHhh-----cCeEEEEecCCccHHHHHHHHHHHhcc-------------ceEEEEEecCC--CChhhhhHHHHHH
Confidence 444444544 369999999999999999999876654 68999999986 3456788899999
Q ss_pred HhcCCeEEEEECcccc--CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccc
Q 005804 148 SDMGIRCEIVRCDWLD--GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (676)
Q Consensus 148 ~~LGI~~~iv~~~~~~--~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~ 225 (676)
+++||.|.+++.+... ......+.|..|++..|..+.+.|.+.|+++|+-|+|+||.-+ .-.|+....
T Consensus 68 ~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~----------~RPG~rA~k 137 (269)
T COG1606 68 KEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFD----------YRPGLRALK 137 (269)
T ss_pred HHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcC----------CCcchhhHH
Confidence 9999999999887543 1113347788999999999999999999999999999999644 122333322
Q ss_pred ccccccccccccccccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeCCCCCC
Q 005804 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVEDPTNRS 280 (676)
Q Consensus 226 ~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veDpSN~d 280 (676)
. . .+--||.+ ++|+||+++++.+|++|.+.|+-..
T Consensus 138 E------------------~--gi~sPl~e~gitk~eIre~a~~lgl~~~~kp~~aC 174 (269)
T COG1606 138 E------------------L--GIRSPLAEFGITKKEIREIAKSLGLPTWDKPSMAC 174 (269)
T ss_pred h------------------c--CCCChHHHhCCcHHHHHHHHHHcCCCcccCccccc
Confidence 1 1 25578865 7999999999999999998888665
No 36
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.65 E-value=1.4e-15 Score=166.60 Aligned_cols=148 Identities=15% Similarity=0.197 Sum_probs=114.7
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWL 162 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~~~ 162 (676)
||+||+|||+||+++++++++. |+ +++|+|+|+|++ .+|.+.++++|+++|+ +++++++...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~---g~-----------~V~av~id~Gq~---~~e~~~a~~~a~~lGi~~~~viD~~~e 63 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK---GY-----------EVIAYTADVGQP---EEDIDAIPEKALEYGAENHYTIDAREE 63 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc---CC-----------EEEEEEEecCCC---hHHHHHHHHHHHHhCCCeEEEEeCHHH
Confidence 5899999999999999988652 32 799999999975 5688889999999998 8999998643
Q ss_pred cCC----C-CCCC---------hHHHHHHHHHHHHHHHHHHcCCCEEeecccc--chhHHHHHHHhhcCCCCCCcccccc
Q 005804 163 DGR----P-KQGH---------LQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMAF 226 (676)
Q Consensus 163 ~~~----~-~~gn---------~E~~AR~iRY~~L~~~A~e~g~~~LatGHha--DDqaET~LmrL~RGsG~~GLaGm~~ 226 (676)
+.. + ...+ ....+|.+++..+.++|++.|+++|+.||+. |||+. +.|..+...
T Consensus 64 f~~~~~~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvr--f~r~~~~~~--------- 132 (394)
T TIGR00032 64 FVKDYGFAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQER--FERSIRLLN--------- 132 (394)
T ss_pred HHHhhchhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHH--HHHHHHHhC---------
Confidence 311 1 1111 1124789999999999999999999999976 58865 222222211
Q ss_pred cccccccccccccccccCCCeEEEeeC--CCCCHHHHHHHHHhCCCceeeCCC
Q 005804 227 SSQIFSSYAYSCHDDLKNHSILLVRPL--LDFSKDDMYKICQGGNRDWVEDPT 277 (676)
Q Consensus 227 v~~lf~~~~~~~~~~~~~~~i~IIRPL--L~lsK~EIr~y~~~~gLp~veDpS 277 (676)
.++.++.|| ..++|+|+++|++++|+|+..++.
T Consensus 133 ------------------~~l~viaPLrew~l~r~ei~~ya~~~Gip~~~~~~ 167 (394)
T TIGR00032 133 ------------------PDLKVIAPWRDLNFTREEEIEYAIQCGIPYPMSKE 167 (394)
T ss_pred ------------------CCCeEECchhhcCCCHHHHHHHHHHcCCCeeEecC
Confidence 134699999 669999999999999999987653
No 37
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.65 E-value=5.5e-15 Score=156.83 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=121.0
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
++++|++|||+||+||++|+.++.... ...+.++|||+|. +.++..+++.++|+++|+++++...+..
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~----------~~~~~vl~iDTG~--~FpEt~ef~d~~a~~~gl~l~v~~~~~~ 95 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG----------KLPFPLLHVDTGW--KFPEMIEFRDRRAKELGLELIVHSNPEG 95 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc----------CCCeeEEEEeCCC--CCHHHHHHHHHHHHHhCCCEEEEeChHH
Confidence 689999999999999999998764321 1256789999998 5677789999999999999998865422
Q ss_pred cC---CCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhH----HHHHHHhhcCCCCC-Ccccccccc-ccccc
Q 005804 163 DG---RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA----ELFILRLSRNSGVL-GLAGMAFSS-QIFSS 233 (676)
Q Consensus 163 ~~---~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa----ET~LmrL~RGsG~~-GLaGm~~v~-~lf~~ 233 (676)
.. .+...+.+..|..++...|.++++++|++.+++||+.||-. |+++.- +..... .....+|.. .+|
T Consensus 96 i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~~Ra~e~~fs~--r~~~~~wd~~~q~Pelw~~~-- 171 (301)
T PRK05253 96 IARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEKSRAKERIFSF--RDEFGQWDPKNQRPELWNLY-- 171 (301)
T ss_pred HhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhhhhccCccccc--cccccccCccccChhhhhhc--
Confidence 11 11223467889999999999999999999999999999954 333321 111000 001111100 000
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCC
Q 005804 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDP 276 (676)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDp 276 (676)
......+....++||++++..||.+|+..+|||+..--
T Consensus 172 -----~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY 209 (301)
T PRK05253 172 -----NGRINKGEHIRVFPLSNWTELDIWQYIERENIPIVPLY 209 (301)
T ss_pred -----cccccCCCeEEEeehhhCCHHHHHHHHHHcCCCCCccc
Confidence 00012334567899999999999999999999996433
No 38
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.4e-15 Score=163.09 Aligned_cols=176 Identities=15% Similarity=0.142 Sum_probs=130.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC-C----CCcHHHHHHHHHHHHhcCCeEEE
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-R----EESKEEANIVSHRVSDMGIRCEI 156 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL-R----~eS~~Eae~V~~l~~~LGI~~~i 156 (676)
..||+||+||||||+|.|+||++ .|+ +|+++|+.... . ..+.++.+.+++.|+++|||+++
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~---QGy-----------eViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~ 68 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKE---QGY-----------EVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYV 68 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHH---cCC-----------eEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEE
Confidence 47999999999999999999964 454 79999986554 1 25678889999999999999999
Q ss_pred EECccccC-----------CC-CCCChHHHH-HHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccc
Q 005804 157 VRCDWLDG-----------RP-KQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAG 223 (676)
Q Consensus 157 v~~~~~~~-----------~~-~~gn~E~~A-R~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaG 223 (676)
+++...+. .. ...||+..| |.+.+..|.+.|.++|+++|||||.+.=.-..--..|.||....
T Consensus 69 vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~---- 144 (356)
T COG0482 69 VDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLN---- 144 (356)
T ss_pred EchHHHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcc----
Confidence 99875432 11 234899999 99999999999999999999999997532210011123443221
Q ss_pred ccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCch
Q 005804 224 MAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLF 283 (676)
Q Consensus 224 m~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y 283 (676)
... ++.+.......--.++.||-++.|.|||++|.+.|++....+..++.+|
T Consensus 145 -KDQ-------sYfL~~~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~KkdS~~ICF 196 (356)
T COG0482 145 -KDQ-------SYFLYALSQEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKKKDSQGICF 196 (356)
T ss_pred -cch-------hheecccCHHHHhhccccCCCCCHHHHHHHHHHcCCCccCcccCCccee
Confidence 111 1111112222333689999999999999999999999999999888777
No 39
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.62 E-value=4.8e-15 Score=151.90 Aligned_cols=153 Identities=15% Similarity=0.189 Sum_probs=111.5
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCe-EEEEECcc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDW 161 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~-~~iv~~~~ 161 (676)
++++|++|||+||+++++++.+ .+. +++++|+|+|.|. ..|.+.++++|+++|++ ++++++++
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~---~~~-----------~v~alt~dygq~~--~~El~~a~~ia~~~gi~~h~vid~~~ 65 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQ---QYD-----------EVHCVTFDYGQRH--RAEIDVARELALKLGARAHKVLDVTL 65 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHh---cCC-----------eEEEEEEEeCCCC--HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 4799999999999999988753 221 6899999999875 56899999999999996 99999886
Q ss_pred ccC--C----------CCC----C---ChHHHHHHHHHHHHHH-HHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCC-
Q 005804 162 LDG--R----------PKQ----G---HLQEAARDMRYRLFQK-VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLG- 220 (676)
Q Consensus 162 ~~~--~----------~~~----g---n~E~~AR~iRY~~L~~-~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~G- 220 (676)
... . +.. . +..-.+|.+.+..+.. +|..+|++.|++|.|++|... -+++
T Consensus 66 l~~l~~s~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~----------YpDcr 135 (231)
T PRK11106 66 LNELAVSSLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSG----------YPDCR 135 (231)
T ss_pred cccccccccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCC----------CCCCC
Confidence 421 0 000 0 1112468888877776 899999999999999998421 0122
Q ss_pred ---cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC-Cce
Q 005804 221 ---LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN-RDW 272 (676)
Q Consensus 221 ---LaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g-Lp~ 272 (676)
+..|.....+ .....+.|..||++++|.||+++++++| +||
T Consensus 136 ~~Fi~A~~~~~~~-----------~~~~~i~I~aPl~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 136 DEFVKALNHAVSL-----------GMAKDIRFETPLMWLNKAETWALADYYGQLDL 180 (231)
T ss_pred HHHHHHHHHHHHh-----------ccCCCcEEEecCCCCCHHHHHHHHHHcCCccc
Confidence 2222211100 0123478999999999999999999999 888
No 40
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.61 E-value=8.9e-15 Score=160.20 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=116.3
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECcc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDW 161 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~~ 161 (676)
++|+||+|||+||+++++++++.. |. +++|+|+|.|.+ +|.+.+++.|+++|+ +++++++..
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l--G~-----------eViavt~d~Gq~----~dle~a~~~A~~lGi~~~~viD~~~ 65 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY--GC-----------EVIAFTADVGQG----EELEPIREKALKSGASEIYVEDLRE 65 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh--CC-----------eEEEEEEecCCH----HHHHHHHHHHHHcCCCeEEEEcCHH
Confidence 689999999999999999886521 22 799999999974 578889999999998 688877763
Q ss_pred ccC--------C------CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc--chhHHHHHHHhhcCCCCCCccccc
Q 005804 162 LDG--------R------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMA 225 (676)
Q Consensus 162 ~~~--------~------~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha--DDqaET~LmrL~RGsG~~GLaGm~ 225 (676)
.+. . -...+++..||..-+..+.++|++.|+++|++||+. +||..--. |+..+.
T Consensus 66 ef~~~~i~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~rf~~----------g~~al~ 135 (399)
T PRK00509 66 EFVRDYVFPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQVRFEL----------GIAALA 135 (399)
T ss_pred HHHHHhHHHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHHHHHH----------HHHHhC
Confidence 221 0 112367888998889999999999999999999999 99986311 122222
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCC---CHHHHHHHHHhCCCceeeCC
Q 005804 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDF---SKDDMYKICQGGNRDWVEDP 276 (676)
Q Consensus 226 ~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~l---sK~EIr~y~~~~gLp~veDp 276 (676)
+ .+.++-|+.++ +|+|+++|++++|||.-.++
T Consensus 136 p-------------------el~VisPlre~~~~tK~eir~~A~~~Gipv~~~~ 170 (399)
T PRK00509 136 P-------------------DLKVIAPWREWDLKSREELIAYAEEHGIPIPVTK 170 (399)
T ss_pred C-------------------CCeeecchhhcCCCCHHHHHHHHHHcCCCCCCCC
Confidence 1 23689999987 99999999999999985443
No 41
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.57 E-value=2e-14 Score=161.57 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=113.2
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcC----CeEE
Q 005804 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG----IRCE 155 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LG----I~~~ 155 (676)
...+|+++++|||.||+|+++++.+ .|. ++.++|+|+|.+.....+.+.++.++++++ ++++
T Consensus 175 g~~gk~lvllSGGiDS~va~~~~~k---rG~-----------~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~ 240 (482)
T PRK01269 175 GTQEDVLSLISGGFDSGVASYMLMR---RGS-----------RVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFI 240 (482)
T ss_pred cccCeEEEEEcCCchHHHHHHHHHH---cCC-----------EEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEE
Confidence 3458999999999999999998854 332 799999999987433335566666665554 5677
Q ss_pred EEECccccCC---CCCCChH-HHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccc
Q 005804 156 IVRCDWLDGR---PKQGHLQ-EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (676)
Q Consensus 156 iv~~~~~~~~---~~~gn~E-~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf 231 (676)
++++...... ....+.+ ...|++-+.+-..+|++.|++.|+||||.+|.+.+.+++|......
T Consensus 241 ~v~~~~~~~~i~~~~~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~~~~------------- 307 (482)
T PRK01269 241 SVDFEPVVGEILEKVDDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLIDNV------------- 307 (482)
T ss_pred EEecHHHHHHHHhcCCCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhhhhh-------------
Confidence 7765322110 0001111 1445555555699999999999999999999998888886654210
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCC
Q 005804 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279 (676)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~ 279 (676)
.++.+.|||..++|.||.+++++.|+...+.++.+
T Consensus 308 -------------~~~~v~rPLi~~dK~EIi~~a~~ig~~~~s~~~p~ 342 (482)
T PRK01269 308 -------------TDTLILRPLIAMDKEDIIDLAREIGTEDFAKTMPE 342 (482)
T ss_pred -------------cCCceecCCcCCCHHHHHHHHHHhCChhhcccCCC
Confidence 12458899999999999999999998544555543
No 42
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=99.52 E-value=1.9e-14 Score=151.06 Aligned_cols=202 Identities=21% Similarity=0.231 Sum_probs=160.1
Q ss_pred HHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeE
Q 005804 75 AMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRC 154 (676)
Q Consensus 75 ~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~ 154 (676)
.+..+..+++|.++.|||.||+++++.+..+-.. .++..++..+-+|||++...++-.+.|+....++|+|+
T Consensus 44 ~n~l~~rge~v~igasGgkdstvlA~v~~~Ln~r--------~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL 115 (347)
T KOG2840|consen 44 ANKLFARGERVAIGASGGKDSTVLAYVLDALNER--------HDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPL 115 (347)
T ss_pred ccCccCCCCccccccccchhHHHHHHHHHHhhhh--------cCCCceeeeeeccccccceeccHHHHHHHhhhhcCCce
Confidence 3446889999999999999999999988765433 12334888999999999888887888888899999999
Q ss_pred EEEECccccC-CCC----------CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCC--CCCc
Q 005804 155 EIVRCDWLDG-RPK----------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSG--VLGL 221 (676)
Q Consensus 155 ~iv~~~~~~~-~~~----------~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG--~~GL 221 (676)
.++.....+. +.. ..|-+..|--+|++++.+-+...|+..++|||++||-+||++||++||-. ..-+
T Consensus 116 ~ivs~~dl~~~~tmd~i~~~i~~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~aetvl~n~lrgds~rl~R~ 195 (347)
T KOG2840|consen 116 CIVSYKDLYGEWTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWAETVLMNLLRGDSARLERL 195 (347)
T ss_pred EEecHHHHhccchHHHHHHHHhhhhhcCceeecHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHhHHHHhhhc
Confidence 9998764433 110 12344456689999999999999999999999999999999999999963 1122
Q ss_pred ccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhhhhccC
Q 005804 222 AGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSS 297 (676)
Q Consensus 222 aGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~~l~~ 297 (676)
..+.- ...+.+.+.-..||.+-++.||.-|+....+.|+.-.++..+.-.|..-|..|.+++.
T Consensus 196 ~~~~t-------------~~~e~~~~~r~kplk~~~~keivLya~~~~L~yFs~eCv~ap~a~rg~~r~~lk~le~ 258 (347)
T KOG2840|consen 196 TEITT-------------PSLEMGIIPRLKPLKYASEKEIVLYASLSKLRYFSTECVKAPGASRGDARILLKDLER 258 (347)
T ss_pred ccccc-------------CccccCccccccccccchhhehhhHHHHHHHHHHHHhhccCCcchHHHHHHHhhhhhh
Confidence 22211 0012233667899999999999999999999999999999998889999999999874
No 43
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.51 E-value=1.3e-13 Score=142.31 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH
Q 005804 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (676)
Q Consensus 64 ~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V 143 (676)
+.....+++.+... ..++|+||+|||+||+++++++.++.+. .++++++++++. .+..+.+.+
T Consensus 8 ~~l~~~l~~~~~~~---~~~~vvv~lSGGiDSs~~a~la~~~~~~------------~~v~~~~~~~~~--~~~~~~~~a 70 (248)
T cd00553 8 NALVLFLRDYLRKS---GFKGVVLGLSGGIDSALVAALAVRALGR------------ENVLALFMPSRY--SSEETREDA 70 (248)
T ss_pred HHHHHHHHHHHHHh---CCCCEEEeCCCcHHHHHHHHHHHHHhCc------------ccEEEEECCCCC--CCHHHHHHH
Confidence 34444555666553 2368999999999999999999876431 168999999986 356788999
Q ss_pred HHHHHhcCCeEEEEECccccCC------C-CCC-----ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHH
Q 005804 144 SHRVSDMGIRCEIVRCDWLDGR------P-KQG-----HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~~~~~------~-~~g-----n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~Lmr 211 (676)
+++|+++|+++++++++..+.. . ... ..+..+.++|...+..+|.++|+.+|.||| ..|+++
T Consensus 71 ~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn----~~E~~~-- 144 (248)
T cd00553 71 KELAEALGIEHVNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN----KSELLL-- 144 (248)
T ss_pred HHHHHHhCCeEEEeccHHHHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc----HhHHHh--
Confidence 9999999999999987643210 0 001 124456678999999999999998888877 456653
Q ss_pred hhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 212 LSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 212 L~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
|.. ... . .+...++||.+++|.||+++++.+|+|.
T Consensus 145 ---G~~--t~~--------------------g-d~~~~i~Pl~~l~K~eV~~la~~~~ip~ 179 (248)
T cd00553 145 ---GYF--TKY--------------------G-DGAADINPIGDLYKTQVRELARYLGVPE 179 (248)
T ss_pred ---CCe--ecc--------------------C-CcccCccccCCCcHHHHHHHHHHHCchH
Confidence 211 000 0 1224789999999999999999999985
No 44
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.51 E-value=2e-13 Score=149.85 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=112.0
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCe-EEEEECcc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDW 161 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~-~~iv~~~~ 161 (676)
+||+||+|||+||+++++++++. .|+ +++|+|+|.|.+ .+|.+.+++.|+++|++ ++++++..
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~--~G~-----------eViav~id~Gq~---~~el~~a~~~A~~lGi~~~~v~dl~~ 69 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLREN--YGC-----------EVVCFTADVGQG---IEELEGLEAKAKASGAKQLVVKDLRE 69 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHh--hCC-----------eEEEEEEECCCC---hHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 69999999999999999988652 122 799999999963 45788899999999997 57777654
Q ss_pred ccC----CC------C-CC-ChH--HHHHHHHHHHHHHHHHHcCCCEEeecccc--chhHHHHHHHhhcCCCCCCccccc
Q 005804 162 LDG----RP------K-QG-HLQ--EAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMA 225 (676)
Q Consensus 162 ~~~----~~------~-~g-n~E--~~AR~iRY~~L~~~A~e~g~~~LatGHha--DDqaET~LmrL~RGsG~~GLaGm~ 225 (676)
.+. .+ . .+ -++ ..+|.+-+..+.++|++.|+++|+.||+. +||..--. |+..+.
T Consensus 70 ef~~~~i~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf~~----------~~~al~ 139 (404)
T PLN00200 70 EFVRDYIFPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFEL----------TFFALN 139 (404)
T ss_pred HHHHhhcCHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHHHH----------HHHHhC
Confidence 321 11 0 01 111 24677888899999999999999999999 99986311 122222
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCC---CHHHHHHHHHhCCCceeeCCC
Q 005804 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDF---SKDDMYKICQGGNRDWVEDPT 277 (676)
Q Consensus 226 ~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~l---sK~EIr~y~~~~gLp~veDpS 277 (676)
+ .+.++-|+.++ +|+|+++|++++|||....|.
T Consensus 140 p-------------------el~ViaPlre~~~~~r~e~~~~A~~~Gipv~~~~~ 175 (404)
T PLN00200 140 P-------------------ELKVVAPWREWDIKGREDLIEYAKKHNIPVPVTKK 175 (404)
T ss_pred C-------------------CCeeeCchhhcCCCCHHHHHHHHHHcCCCCCCCCC
Confidence 1 23689999885 399999999999999765554
No 45
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.50 E-value=5.9e-14 Score=141.91 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=92.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWL 162 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~~~ 162 (676)
|++|.+|||.||+++++++.+. +. +++++|||||.| ...|.+.++++|+++|+ +++++++++.
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~---~~-----------~v~al~~~YGq~--~~~El~~a~~i~~~l~v~~~~~i~l~~~ 64 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKE---GY-----------EVYALTFDYGQR--HRRELEAAKKIAKKLGVKEHEVIDLSFL 64 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH----S-----------EEEEEEEESSST--TCHHHHHHHHHHHHCT-SEEEEEE-CHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHc---CC-----------eEEEEEEECCCC--CHHHHHHHHHHHHHhCCCCCEEeeHHHH
Confidence 6899999999999999887642 22 799999999998 46788999999999999 9999998842
Q ss_pred cC-CC-----CCCChHH-------H------HHH-HHHHHHHHHHHHcCCCEEeeccccchh------HHHHHHHhhcCC
Q 005804 163 DG-RP-----KQGHLQE-------A------ARD-MRYRLFQKVCIQHQIGVLLIAHHADDQ------AELFILRLSRNS 216 (676)
Q Consensus 163 ~~-~~-----~~gn~E~-------~------AR~-iRY~~L~~~A~e~g~~~LatGHhaDDq------aET~LmrL~RGs 216 (676)
.. .. ....++. . .|. +-..+-..+|...|++.|++|.|.+|- -..|+.++.+
T Consensus 65 ~~~~~s~L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~-- 142 (209)
T PF06508_consen 65 KEIGGSALTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNR-- 142 (209)
T ss_dssp HHCSCHHHHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHH--
T ss_pred HhhCCCcccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHH--
Confidence 21 00 0001111 0 122 222334567888999999999998872 2223221111
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceee
Q 005804 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE 274 (676)
Q Consensus 217 G~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ve 274 (676)
.- .......++|.-||++++|.||.+.+.++|+||-.
T Consensus 143 ----------~~-----------~~~~~~~v~i~~P~~~~tK~eiv~~~~~lg~~~~~ 179 (209)
T PF06508_consen 143 ----------LL-----------NLGEGGPVRIETPLIDLTKAEIVKLGVELGVPLEL 179 (209)
T ss_dssp ----------HH-----------HHHHTS--EEE-TTTT--HHHHHHHHHHTTHHHHH
T ss_pred ----------HH-----------HhcCCCCEEEEecCCCCCHHHHHHHHHHcCCCHHH
Confidence 00 00124568999999999999999999999987743
No 46
>PRK13980 NAD synthetase; Provisional
Probab=99.50 E-value=7.6e-13 Score=138.04 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~ 145 (676)
+...+++.+.+.+ .++|+||+|||+||+++++++.+..+. .+++++|++++. .+..+.+.+++
T Consensus 17 l~~~l~~~v~~~g---~~~vvv~lSGGiDSsv~a~l~~~~~~~------------~~v~av~~~~~~--~~~~~~~~a~~ 79 (265)
T PRK13980 17 IVDFIREEVEKAG---AKGVVLGLSGGIDSAVVAYLAVKALGK------------ENVLALLMPSSV--SPPEDLEDAEL 79 (265)
T ss_pred HHHHHHHHHHHcC---CCcEEEECCCCHHHHHHHHHHHHHhCc------------cceEEEEeeCCC--CCHHHHHHHHH
Confidence 3334444554433 378999999999999999999775421 168999999997 35678889999
Q ss_pred HHHhcCCeEEEEECcccc---C--CCC--CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCC
Q 005804 146 RVSDMGIRCEIVRCDWLD---G--RPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV 218 (676)
Q Consensus 146 l~~~LGI~~~iv~~~~~~---~--~~~--~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~ 218 (676)
+|+.+|+++++++++... . .+. ....+..+.++|+.++..+|++.|+.+|.||.- .|.. .|-+.
T Consensus 80 la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~----sE~~-----~G~~t 150 (265)
T PRK13980 80 VAEDLGIEYKVIEITPIVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNK----SELL-----LGYFT 150 (265)
T ss_pred HHHHhCCCeEEEECHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCH----hHHH-----hCCcc
Confidence 999999999999876421 0 011 113466788899999999999999877766632 3332 12210
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCC
Q 005804 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRS 280 (676)
Q Consensus 219 ~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d 280 (676)
.. .+ ....+.||.+++|.||+++++.+|+| +++.|...+
T Consensus 151 --~~--------------------gD-~~~~l~Pl~~l~K~eV~~la~~lgip~~i~~k~psa~ 191 (265)
T PRK13980 151 --KY--------------------GD-GAVDLNPIGDLYKTQVRELARHLGVPEDIIEKPPSAD 191 (265)
T ss_pred --CC--------------------CC-cccCcccCCCCcHHHHHHHHHHHCchHHHhCCCCCcC
Confidence 00 11 11258999999999999999999999 555555444
No 47
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.49 E-value=3.3e-13 Score=147.69 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=109.2
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCe-EEEEECcccc
Q 005804 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDWLD 163 (676)
Q Consensus 85 VlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~-~~iv~~~~~~ 163 (676)
|+||+|||+||+++++++++.. + .+++|+|+|+|.+. ++.+.+++.|+++|++ +++++++..+
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~--~-----------~eV~av~~d~Gq~~---~~~e~a~~~a~~lG~~~~~viD~~~ef 64 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG--G-----------YEVIAVTADVGQPE---EEIEAIEEKALKLGAKKHVVVDLREEF 64 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC--C-----------CeEEEEEEECCCcc---hhHHHHHHHHHHcCCCEEEEeccHHHH
Confidence 6899999999999999886531 1 16999999999742 2347899999999996 8888876433
Q ss_pred CC----C-------CCC---ChHHHHHHHHHHHHHHHHHHcCCCEEeecccc--chhHHHHHHHhhcCCCCCCccccccc
Q 005804 164 GR----P-------KQG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMAFS 227 (676)
Q Consensus 164 ~~----~-------~~g---n~E~~AR~iRY~~L~~~A~e~g~~~LatGHha--DDqaET~LmrL~RGsG~~GLaGm~~v 227 (676)
.. + ..+ .....||.+-+..+.++|++.|+++|++||+. +||..-- .+ +..+
T Consensus 65 ~~~~i~~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~-----~~-----~~al--- 131 (385)
T cd01999 65 VEDYIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFE-----LA-----FYAL--- 131 (385)
T ss_pred HHHhhHHHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHH-----HH-----HHhh---
Confidence 21 0 001 23455888888889999999999999999997 4887411 11 1111
Q ss_pred ccccccccccccccccCCCeEEEeeCCCC---CHHHHHHHHHhCCCceeeC
Q 005804 228 SQIFSSYAYSCHDDLKNHSILLVRPLLDF---SKDDMYKICQGGNRDWVED 275 (676)
Q Consensus 228 ~~lf~~~~~~~~~~~~~~~i~IIRPLL~l---sK~EIr~y~~~~gLp~veD 275 (676)
...+.++-||+++ +|+|+++|++++|||+...
T Consensus 132 ----------------~pel~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~ 166 (385)
T cd01999 132 ----------------NPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVT 166 (385)
T ss_pred ----------------CCCCEEEcchhhhhcCCHHHHHHHHHHcCCCCccc
Confidence 1235799999998 9999999999999998543
No 48
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.49 E-value=1.5e-12 Score=137.70 Aligned_cols=172 Identities=17% Similarity=0.068 Sum_probs=117.3
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
++.++++|||+||+|+++|+.++...+ ...+.++|||+|. +-.+-.+++.++++++|+++++...+..
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~~----------~~p~~vl~IDTG~--~F~Et~efrd~~a~~~gl~l~v~~~~~~ 87 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYPG----------PLPFPLLHVDTGW--KFREMIAFRDHMVAKYGLRLIVHSNEEG 87 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhccc----------CCCeEEEEEecCC--CCHHHHHHHHHHHHHhCCCEEEEechhh
Confidence 346889999999999999998764321 1157899999998 5667788999999999999999876532
Q ss_pred cC--C-CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhh--cCCCCCC-c-cccccccccccccc
Q 005804 163 DG--R-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLS--RNSGVLG-L-AGMAFSSQIFSSYA 235 (676)
Q Consensus 163 ~~--~-~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~--RGsG~~G-L-aGm~~v~~lf~~~~ 235 (676)
.. . +...+....|..++...|.+++.++|++.+++||..||-....-+++. |.....+ - ..-|.. +
T Consensus 88 ~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~sRake~i~s~r~~~~~wD~~~q~Pel-------w 160 (294)
T TIGR02039 88 IADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEKSRAKERIFSFRNAFHQWDPKKQRPEL-------W 160 (294)
T ss_pred hhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhhHhhcCceeeccccccccCccccCchh-------h
Confidence 11 1 112234556778888999999999999999999999998765422221 1111000 0 000000 0
Q ss_pred ccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 236 YSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 236 ~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
.........+...-+.||++++..||..|+..+|||+.
T Consensus 161 ~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~ 198 (294)
T TIGR02039 161 NLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIPIV 198 (294)
T ss_pred hccccccccCCcEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 00000011233456789999999999999999999984
No 49
>PRK08576 hypothetical protein; Provisional
Probab=99.47 E-value=6.5e-13 Score=147.17 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=108.8
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
.+|+||+|||+||+|+++++.+... ++.++|+|+|. +..+..+++.++|+++||++++.+.+..
T Consensus 235 ~rVvVafSGGKDStvLL~La~k~~~--------------~V~aV~iDTG~--e~pet~e~~~~lae~LGI~lii~~v~~~ 298 (438)
T PRK08576 235 WTVIVPWSGGKDSTAALLLAKKAFG--------------DVTAVYVDTGY--EMPLTDEYVEKVAEKLGVDLIRAGVDVP 298 (438)
T ss_pred CCEEEEEcChHHHHHHHHHHHHhCC--------------CCEEEEeCCCC--CChHHHHHHHHHHHHcCCCEEEcccCHH
Confidence 4899999999999999998876421 37899999997 5567788899999999999988333311
Q ss_pred cCCCC---CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccc
Q 005804 163 DGRPK---QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (676)
Q Consensus 163 ~~~~~---~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~ 239 (676)
..... ....+..|...++..|.++++++|++++++||. +|+..+ |.. .+++..
T Consensus 299 ~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R-~dES~~------R~~-------~p~v~~---------- 354 (438)
T PRK08576 299 MPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDR-DGESAR------RRL-------RPPVVE---------- 354 (438)
T ss_pred HHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEee-HHHhHH------hhc-------CCcccc----------
Confidence 10010 112345678889999999999999999999985 444322 111 111100
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
......++..++||..++.+||..|+..+|+|+.
T Consensus 355 ~~~~~~~v~rI~PL~~Wte~DV~~YI~~~gLP~n 388 (438)
T PRK08576 355 RKTNFGKILVVMPIKFWSGAMVQLYILMNGLELN 388 (438)
T ss_pred cccCCCCeEEEeChhhCCHHHHHHHHHHhCCCCC
Confidence 0001135779999999999999999999999973
No 50
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.46 E-value=1.9e-13 Score=149.48 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=112.8
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCD 160 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~ 160 (676)
.++|+||+|||+||++++.++++ .|+ +++|+|+|.|.++ .+|.+.+++.|.++|+ ++++++++
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e---~G~-----------~Viavt~d~gq~~--~~El~~a~~~A~~lG~~~~~viD~~ 65 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE---RGY-----------AVHTVFADTGGVD--AEERDFIEKRAAELGAASHVTVDGG 65 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH---cCC-----------cEEEEEEEeCCCC--HHHHHHHHHHHHHcCCCeEEEecCH
Confidence 36899999999999999998865 232 7999999999864 5688899999999998 69999987
Q ss_pred cccCCC-----------CC---CChHHHHHHHHHHHHHHHHHHcCCCEEeeccc--cchhHHHHHHHhhcCCCCCCcccc
Q 005804 161 WLDGRP-----------KQ---GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSGVLGLAGM 224 (676)
Q Consensus 161 ~~~~~~-----------~~---gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHh--aDDqaET~LmrL~RGsG~~GLaGm 224 (676)
..+... .. .+++ ..|-+.+..+.++|++.|+++|++|++ .|||..--. |+...
T Consensus 66 eef~e~vi~p~i~aNa~y~G~yPl~~-~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfrp----------g~~Al 134 (400)
T PRK04527 66 PAIWEGFVKPLVWAGEGYQGQYPLLV-SDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFDL----------AVKAL 134 (400)
T ss_pred HHHHHHHHHHHHhcchhhcCCCCCcc-ccHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhccH----------HHHHh
Confidence 543210 00 1222 378888889999999999999999999 899986221 12211
Q ss_pred cccccccccccccccccccCCCeEEEeeCCCC------CHHHHHHHHHhCCCceeeCC
Q 005804 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF------SKDDMYKICQGGNRDWVEDP 276 (676)
Q Consensus 225 ~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~l------sK~EIr~y~~~~gLp~veDp 276 (676)
. .+.++-||+++ .|+|..+||+++|||.-.++
T Consensus 135 ~--------------------el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~~~~ 172 (400)
T PRK04527 135 G--------------------DYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVRAKQ 172 (400)
T ss_pred h--------------------cCCccchHHHhcCcccccHHHHHHHHHHcCCCCCCCC
Confidence 1 23578888874 68888999999999985443
No 51
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.45 E-value=2.7e-13 Score=129.02 Aligned_cols=105 Identities=21% Similarity=0.265 Sum_probs=83.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
.++|++|||+||+++++++.+... .++.++|+|||++ +.++.+.++++|+. |+++..+.+++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~-------------~~v~~v~~~~g~~--~~~~~~~~~~~a~~-g~~~~~~~~~~~~ 66 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG-------------LNPLAVTVDNGFN--SEEAVKNIKNLIKK-GLDLDHLVINPEE 66 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC-------------CceEEEEeCCCCC--CHHHHHHHHHHHHh-CCCeEEEecCHHH
Confidence 589999999999999999865321 1578999999995 45677899999999 8887766665432
Q ss_pred CC--------CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchh
Q 005804 164 GR--------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (676)
Q Consensus 164 ~~--------~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDq 204 (676)
.. ...++++..++.+|+.++.++|++.|++.|++||++|+.
T Consensus 67 ~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~ 115 (154)
T cd01996 67 MKDLQLARFKAKVGDPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQE 115 (154)
T ss_pred HHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHh
Confidence 10 012356777899999999999999999999999999885
No 52
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.8e-13 Score=141.42 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=120.1
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEE-------CCCCCCcHHHHHHHHHHHHhcCCe
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD-------HGLREESKEEANIVSHRVSDMGIR 153 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVD-------HGLR~eS~~Eae~V~~l~~~LGI~ 153 (676)
..++|+||+||||||+|+|+||+. +|+ ++++|++- +|-+.-...|.+.|+..|++++||
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~---~g~-----------~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~ 69 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAA---RGY-----------NVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIP 69 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHh---cCC-----------CeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCe
Confidence 347999999999999999999963 443 68888863 343444567888999999999999
Q ss_pred EEEEECcccc-----------CCC-CCCChHHHH-HHHHHH-HHHHHHHHcCCCEEeeccccchhHHHHH---HHhhcCC
Q 005804 154 CEIVRCDWLD-----------GRP-KQGHLQEAA-RDMRYR-LFQKVCIQHQIGVLLIAHHADDQAELFI---LRLSRNS 216 (676)
Q Consensus 154 ~~iv~~~~~~-----------~~~-~~gn~E~~A-R~iRY~-~L~~~A~e~g~~~LatGHhaDDqaET~L---mrL~RGs 216 (676)
++.+++..+. +.. ...||.--| |.+++. ++...-.+.|+|+|+|||.+.-..|-.. .+|+.+.
T Consensus 70 ~~~Vnf~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~ 149 (377)
T KOG2805|consen 70 LHQVNFVKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISK 149 (377)
T ss_pred eEEEeeHHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEeecc
Confidence 9999875211 111 122555444 778888 5555555779999999999875544321 1122221
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchh
Q 005804 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV 284 (676)
Q Consensus 217 G~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~ 284 (676)
.. +..++++........--+++.||-.++|+||+++|++.|+|-.+.|..+..+|.
T Consensus 150 d~------------~KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~aeK~eSqGICFv 205 (377)
T KOG2805|consen 150 DM------------VKDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFPNAEKPESQGICFV 205 (377)
T ss_pred cc------------cCCceeEeecccHHHHHhhhccCcccCHHHHHHHHHhcCCccccCcccceeEEe
Confidence 10 001111111101111124788999999999999999999999999998888874
No 53
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.37 E-value=1.2e-11 Score=127.39 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=110.5
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
++|+|++|||+||+|+++|+.+. +. ++.+++||+|. +.++-.++++++++++|++++++..+..
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~---~~-----------~i~vvfiDTG~--~~pet~e~~~~~~~~~gl~l~v~~~~~~ 104 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV---DP-----------DIPVIFLDTGY--LFPETYRFIDELTERLLLNLKVYRPDAS 104 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc---CC-----------CCcEEEecCCC--CCHHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 56999999999999999999763 11 57799999998 7888889999999999999999876532
Q ss_pred cC-------CCCC---CChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccc
Q 005804 163 DG-------RPKQ---GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (676)
Q Consensus 163 ~~-------~~~~---gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~ 232 (676)
.. .... .+.+..|...+..-|.++++++++ +++||..+|-.. |.. ++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~--~itG~R~~es~~-------R~~-------~~~~~---- 164 (241)
T PRK02090 105 AAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDA--WITGLRREQSGT-------RAN-------LPVLE---- 164 (241)
T ss_pred HHHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCC--eEEEechhhCch-------hcc-------Cceee----
Confidence 10 0111 245677888889999999998876 889999877321 111 11100
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
. +.++.-+.||++.+.+||.+|+..+|||+.
T Consensus 165 ---------~-~~~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~ 195 (241)
T PRK02090 165 ---------I-DGGRFKINPLADWTNEDVWAYLKEHDLPYH 195 (241)
T ss_pred ---------e-cCCeEEEeehhhCCHHHHHHHHHHcCCCCC
Confidence 1 125678999999999999999999999983
No 54
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.37 E-value=4.6e-12 Score=128.47 Aligned_cols=158 Identities=17% Similarity=0.259 Sum_probs=109.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
+|.+|-+|||.||+++++++++ +++ +++++++|||.|. ..|.+.++++++++||+++++++++.
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~---~~~-----------ev~alsfdYGQrh--~~Ele~A~~iak~lgv~~~iid~~~~ 66 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKK---EGY-----------EVHALTFDYGQRH--RKELEAAKELAKKLGVPHHIIDVDLL 66 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHh---cCC-----------EEEEEEeeCCCCc--HHHHHHHHHHHHHcCCCeEEechhHH
Confidence 6899999999999999988753 332 7999999999997 77999999999999999999999875
Q ss_pred cC---CCCC-C-------Ch-HH-------HHHHHH-HHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcc
Q 005804 163 DG---RPKQ-G-------HL-QE-------AARDMR-YRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLA 222 (676)
Q Consensus 163 ~~---~~~~-g-------n~-E~-------~AR~iR-Y~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLa 222 (676)
.. .... + .. ++ .+|.+- ..+-..+|..+|++.|++|-|..|- +
T Consensus 67 ~~~~~saLtd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~-----------------s 129 (222)
T COG0603 67 GEIGGSALTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDF-----------------S 129 (222)
T ss_pred hhcCCCcCcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEeccccc-----------------C
Confidence 41 1110 0 10 11 124332 2334567888999999999998772 2
Q ss_pred cccccccccccccccccccccCCCeE-EEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 223 GMAFSSQIFSSYAYSCHDDLKNHSIL-LVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 223 Gm~~v~~lf~~~~~~~~~~~~~~~i~-IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
|.|..+..|....+.........++. +.-||.+++|.||.+.+.++|.|+-
T Consensus 130 gYPDcrpefi~a~~~~~~l~~~~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~ 181 (222)
T COG0603 130 GYPDCRPEFIEALNEALNLGTEKGVRIIHAPLMELTKAEIVKLADELGVPLE 181 (222)
T ss_pred CCCCCCHHHHHHHHHHHHhhccCCccEEeCCeeeccHHHHHHHHHHhCCcch
Confidence 23333333222111111112233445 5899999999999999999998763
No 55
>PTZ00323 NAD+ synthase; Provisional
Probab=99.37 E-value=8.3e-12 Score=132.28 Aligned_cols=186 Identities=13% Similarity=0.058 Sum_probs=118.6
Q ss_pred ccCCCCCCCccccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEE
Q 005804 50 KCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (676)
Q Consensus 50 ~~~~~w~~~~~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVD 129 (676)
+.+++|+ +.-+++.....+++.+... ..++++||+|||+||++++.++.++.+... .+ ...++++.
T Consensus 19 ~~~~~~~--~~~~i~~~~~~L~~~l~~~---g~~~vVVglSGGVDSav~aaLa~~alg~~~------~~---~~~~~~v~ 84 (294)
T PTZ00323 19 RRKRAFN--PAAWIEKKCAKLNEYMRRC---GLKGCVTSVSGGIDSAVVLALCARAMRMPN------SP---IQKNVGLC 84 (294)
T ss_pred CCCCCCC--HHHHHHHHHHHHHHHHHHc---CCCcEEEECCCCHHHHHHHHHHHHHhcccc------CC---ceEEEEEE
Confidence 4566777 4444555555555555553 347899999999999999999988765310 00 12233444
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCeEEEEECccccC------C-----C----CCCChHHHHHHHHHHHHHHHHHHcCCCE
Q 005804 130 HGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG------R-----P----KQGHLQEAARDMRYRLFQKVCIQHQIGV 194 (676)
Q Consensus 130 HGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~------~-----~----~~gn~E~~AR~iRY~~L~~~A~e~g~~~ 194 (676)
-.. ..++.+.+.++++|+.+||++++++++..+. . . ..++.+...|...-..+.+.+.+.|.+.
T Consensus 85 ~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~ 163 (294)
T PTZ00323 85 QPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPA 163 (294)
T ss_pred CCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCe
Confidence 332 2467899999999999999999999875430 0 0 0011222223222223555566778999
Q ss_pred Eeecc-ccchhHHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--
Q 005804 195 LLIAH-HADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD-- 271 (676)
Q Consensus 195 LatGH-haDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp-- 271 (676)
|+.|+ |++|..... +.-..| .++.=+-|+.+++|.||+++++.+|+|
T Consensus 164 lV~GT~N~sE~~~~G-y~t~~G-----------------------------Dg~~d~~pia~L~K~eVr~LAr~l~lp~~ 213 (294)
T PTZ00323 164 VVMGTGNFDEDGYLG-YFCKAG-----------------------------DGVVDVQLISDLHKSEVFLVARELGVPEN 213 (294)
T ss_pred EEECCCCchhhhHhc-hHhhcC-----------------------------CCCcCchhhcCCcHHHHHHHHHHcCCCHH
Confidence 99999 999953321 111111 122335689999999999999999999
Q ss_pred eeeCCCCCC
Q 005804 272 WVEDPTNRS 280 (676)
Q Consensus 272 ~veDpSN~d 280 (676)
..+-|...+
T Consensus 214 i~~kppSA~ 222 (294)
T PTZ00323 214 TLQAAPSAD 222 (294)
T ss_pred HhcCCCCcC
Confidence 566666555
No 56
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=99.34 E-value=7.1e-12 Score=125.75 Aligned_cols=149 Identities=17% Similarity=0.275 Sum_probs=93.3
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECC-C-CCCcHHHHHHHHHHHHhcC----CeEE
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG-L-REESKEEANIVSHRVSDMG----IRCE 155 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHG-L-R~eS~~Eae~V~~l~~~LG----I~~~ 155 (676)
..|+++.+|||.||.++++++.+ .|. ++.++|++.+ . .+...+.++.+.+....++ ++++
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~k---rG~-----------~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~ 68 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMK---RGC-----------EVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLY 68 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHC---BT------------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEE
T ss_pred CceEEEEecCCccHHHHHHHHHH---CCC-----------EEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEE
Confidence 47899999999999999999863 343 8999999922 2 2234444555555555554 6777
Q ss_pred EEECccccC----CCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccc
Q 005804 156 IVRCDWLDG----RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (676)
Q Consensus 156 iv~~~~~~~----~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf 231 (676)
++++..... .....+++-.||++-|+...++|++.|++.|+||..+..++...+-+| ..+..
T Consensus 69 ~v~~~~~~~~i~~~~~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL---------~~i~~----- 134 (197)
T PF02568_consen 69 VVDFTEVQKEILRGVKERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENL---------RVIES----- 134 (197)
T ss_dssp EECHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHH---------HHHGG-----
T ss_pred EECcHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHH---------hhhhc-----
Confidence 776543221 112336788899999999999999999999999999988765443222 22221
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC
Q 005804 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR 270 (676)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL 270 (676)
.-+..|+|||+.+.|+||.+++++.|.
T Consensus 135 ------------~~~~pIlRPLig~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 135 ------------ASDLPILRPLIGFDKEEIIEIARKIGT 161 (197)
T ss_dssp ------------G--S-EE-TTTT--HHHHHHHHHHTT-
T ss_pred ------------ccCCceeCCcCCCCHHHHHHHHHHhCc
Confidence 114469999999999999999999995
No 57
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.31 E-value=1.1e-11 Score=134.00 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=95.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCCC--CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcH
Q 005804 60 LTDMTKYREAFSRRMAMAGLKPH--HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137 (676)
Q Consensus 60 ~~~~~~~~~~~~~~i~~~~i~~~--~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~ 137 (676)
+++.++-.+.+.+.+....-..+ -.++||||||+||+++++++++.. |. ++.++|+|+|+. ++
T Consensus 35 ~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll~~~~--gl-----------~~l~vt~~~~~~--~e 99 (343)
T TIGR03573 35 KIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKL--GL-----------NPLLVTVDPGWN--TE 99 (343)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHHHh--CC-----------ceEEEEECCCCC--CH
Confidence 34444444445444443211111 469999999999999998885422 21 578999999994 56
Q ss_pred HHHHHHHHHHHhcCCeEEEEECccccCC-------CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 138 EEANIVSHRVSDMGIRCEIVRCDWLDGR-------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 138 ~Eae~V~~l~~~LGI~~~iv~~~~~~~~-------~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
.+.+.++++++++|++++++..++.... ...++++..+...++..+.++|+++|+.+|++|||+|
T Consensus 100 ~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 100 LGVKNLNNLIKKLGFDLHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 6788899999999999999988754321 1234677788889999999999999999999999998
No 58
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.30 E-value=8e-11 Score=125.43 Aligned_cols=172 Identities=13% Similarity=0.058 Sum_probs=113.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
+++++++|||+||+|+++|+.++...+. ..+-++|||+|. .-.+-.+++.++++++|+++++......
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~----------~~~pvl~VDTG~--~FpEt~efrD~~a~~~gl~Liv~~~~~~ 105 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTR----------PPFPLLHVDTTW--KFREMIDFRDRRAKELGLDLVVHHNPDG 105 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccC----------CCeeEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEecChHH
Confidence 5678999999999999999987643211 146789999998 5677788999999999999988764322
Q ss_pred cCC---CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhc--CCC--CCCccccccccccccccc
Q 005804 163 DGR---PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSR--NSG--VLGLAGMAFSSQIFSSYA 235 (676)
Q Consensus 163 ~~~---~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~R--GsG--~~GLaGm~~v~~lf~~~~ 235 (676)
... +...+....|...+-..|.++..++|++.+++|+-.||-....-+++.. ... .+-=.+-|..-.++
T Consensus 106 ~~~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~sRak~~ifs~r~~~~~wD~~~qrPelw~~~---- 181 (312)
T PRK12563 106 IARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEKSRAKERIFSFRSAFHRWDPKAQRPELWSLY---- 181 (312)
T ss_pred HHhCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhhhhccCceecccccccccCccccChhhhhhc----
Confidence 110 1111345556666778899999999999999999999854432111111 100 00000001000000
Q ss_pred ccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 236 YSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 236 ~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
......+...-+.||++.+..||.+|...+|||+.
T Consensus 182 ---n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~ 216 (312)
T PRK12563 182 ---NARLRRGESLRVFPLSNWTELDVWQYIAREKIPLV 216 (312)
T ss_pred ---cccccCCceEEEecchhCCHHHHHHHHHHcCCCCC
Confidence 00011234567899999999999999999999984
No 59
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.22 E-value=1.1e-10 Score=120.82 Aligned_cols=159 Identities=15% Similarity=0.217 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH
Q 005804 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (676)
Q Consensus 64 ~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V 143 (676)
+.....++..+.+.+. ++++||+|||+||++++.|++++.+. .++++|+++.+. .+.++.+.+
T Consensus 3 ~~l~~~L~~~~~~~g~---~~vVvglSGGiDSav~A~La~~Alg~------------~~v~~v~mp~~~--~~~~~~~~A 65 (242)
T PF02540_consen 3 EALVDFLRDYVKKSGA---KGVVVGLSGGIDSAVVAALAVKALGP------------DNVLAVIMPSGF--SSEEDIEDA 65 (242)
T ss_dssp HHHHHHHHHHHHHHTT---SEEEEEETSSHHHHHHHHHHHHHHGG------------GEEEEEEEESST--STHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---CeEEEEcCCCCCHHHHHHHHHHHhhh------------cccccccccccc--CChHHHHHH
Confidence 3445555666655432 78999999999999999999988743 168999999776 567888999
Q ss_pred HHHHHhcCCeEEEEECccccCCCCCC--------ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcC
Q 005804 144 SHRVSDMGIRCEIVRCDWLDGRPKQG--------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~~~~~~~~g--------n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RG 215 (676)
.++|+.+|+++.+++++..+..-... ..+...-++|...+..+|...| .+++|+ ++..|..+ |
T Consensus 66 ~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~--~lVlgT--~N~sE~~~-----G 136 (242)
T PF02540_consen 66 KELAEKLGIEYIVIDIDPIFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYN--YLVLGT--GNKSELLL-----G 136 (242)
T ss_dssp HHHHHHHTSEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEBE----CHHHHHH-----T
T ss_pred HHHHHHhCCCeeccchHHHHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccc--eEEecC--CcHHHhhc-----C
Confidence 99999999999999986432100000 0111223567777888888865 577776 44555432 2
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc
Q 005804 216 SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271 (676)
Q Consensus 216 sG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp 271 (676)
- ...- .++. .-+.||.+++|.||+++++.+|+|
T Consensus 137 y--~T~~--------------------GD~~-~d~~Pi~~L~K~eV~~la~~l~ip 169 (242)
T PF02540_consen 137 Y--FTKY--------------------GDGA-GDIAPIADLYKTEVRELARYLGIP 169 (242)
T ss_dssp C--SHTT--------------------TTTS-SSBETTTTS-HHHHHHHHHHTTCG
T ss_pred c--cccc--------------------Cccc-ccceeeCCcCHHHHHHHHHHHhhH
Confidence 1 1110 1111 236899999999999999999987
No 60
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.13 E-value=2e-10 Score=110.11 Aligned_cols=147 Identities=19% Similarity=0.248 Sum_probs=91.6
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccccC
Q 005804 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (676)
Q Consensus 85 VlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~ 164 (676)
++|++|||+||+|+++|+.++... +.++|+|+|. +..+-.++++++.+++|+++.+........
T Consensus 2 i~vs~SGGKDS~v~l~l~~~~~~~--------------~~vv~~dtg~--e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~ 65 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLAREAGRK--------------VPVVFIDTGY--EFPETYEFVDELAKRYGIPIIVYRPPETFE 65 (174)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTT--------------CEEEEEE-ST--B-HHHHHHHHHHHHHTTCEEEEEETTSHHH
T ss_pred eEEEecCCHHHHHHHHHHHHhcCC--------------CcEEEEecCc--cCHHHHHHHHHHHhhhhhhhhhcccccchh
Confidence 799999999999999999876532 3689999998 778888999999999999987776543211
Q ss_pred CC------CCCChHH-HHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccc
Q 005804 165 RP------KQGHLQE-AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (676)
Q Consensus 165 ~~------~~gn~E~-~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~ 237 (676)
.. .....+. .+..++-+-+.++.++++...+++|.-+++-.. |... .-...
T Consensus 66 ~~~~~~~~~~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~~-------R~~~----~~~~~----------- 123 (174)
T PF01507_consen 66 QRFILYGWPSKLWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESPR-------RAKL----PMFEF----------- 123 (174)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTTG-------CCGS----SSEEE-----------
T ss_pred hccccccccchhhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchhh-------hhhc----hhhhc-----------
Confidence 00 0011122 344555666888888998889999998877432 2210 00000
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
.........+.||.+.+++||.+|.+.+|+|+
T Consensus 124 ---~~~~~~~~~~~Pi~~wt~~dV~~yi~~~~l~~ 155 (174)
T PF01507_consen 124 ---DEDNPKIIRVYPIADWTEEDVWDYIKANGLPY 155 (174)
T ss_dssp ---ETTTTSEEEE-TTTT--HHHHHHHHHHHT--B
T ss_pred ---ccccCCEEEEEehhhCCHHHHHHHHHHhcCCC
Confidence 01112245677999999999999999999987
No 61
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=99.12 E-value=1.8e-10 Score=99.36 Aligned_cols=69 Identities=29% Similarity=0.419 Sum_probs=60.0
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccccC
Q 005804 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (676)
Q Consensus 85 VlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~ 164 (676)
|+|++|||+||+++++++.++...+ .+++++|+|
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~-----------~~~~~~~~~----------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGG-----------PEVVALVVV----------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcC-----------CCEEEEEeH-----------------------------------
Confidence 5899999999999999988764222 268889998
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHh
Q 005804 165 RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL 212 (676)
Q Consensus 165 ~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL 212 (676)
.||+.+.+++++.|++.|++|||.+|+.|+.++++
T Consensus 35 -------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~ 69 (86)
T cd01984 35 -------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS 69 (86)
T ss_pred -------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch
Confidence 88999999999999999999999999999987643
No 62
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.05 E-value=5e-09 Score=105.03 Aligned_cols=142 Identities=11% Similarity=0.107 Sum_probs=105.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCc----HHHHHHHHHHHHhcCCeEEEEEC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES----KEEANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS----~~Eae~V~~l~~~LGI~~~iv~~ 159 (676)
|+++++|||+||+++++++.+ .|. ++.+++++....+.+ ..+.+.++++|+.+|||++++++
T Consensus 1 kv~v~~SGGkDS~~al~~a~~---~G~-----------~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~ 66 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE---EGH-----------EVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEI 66 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH---cCC-----------EEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 589999999999999998865 332 688988886653322 23667788999999999998876
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccc
Q 005804 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (676)
Q Consensus 160 ~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~ 239 (676)
+. +.+... ..-+..+.+++++ |++.|+.|.+++|..-+..-+++...
T Consensus 67 ~~--------~~e~~~-~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~----------------------- 113 (194)
T cd01994 67 SG--------EEEDEV-EDLKELLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERL----------------------- 113 (194)
T ss_pred CC--------CchHHH-HHHHHHHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHc-----------------------
Confidence 31 112222 3445667777777 99999999999987666665555543
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCC
Q 005804 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278 (676)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN 278 (676)
++..+.||...+..++.+-.-+.|+..+.-..+
T Consensus 114 ------gl~~~~PLW~~~~~~ll~e~~~~g~~~~iv~v~ 146 (194)
T cd01994 114 ------GLEPLAPLWGRDQEELLREMIEAGFKAIIIKVA 146 (194)
T ss_pred ------CCEEEecccCCCHHHHHHHHHHcCCeEEEEEec
Confidence 346889999999999888888899887654444
No 63
>PRK13794 hypothetical protein; Provisional
Probab=98.94 E-value=1.8e-08 Score=113.66 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=102.3
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECc-
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD- 160 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~- 160 (676)
+++++||+|||+||+|+++|+.+..+. ++.++++|+|+ +..+..++++++++++|++++++..+
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~~-------------~~~vvfiDTG~--efpet~e~i~~~~~~~gl~i~~~~~~~ 311 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALGI-------------NFPVLFNDTGL--EFPETLENVEDVEKHYGLEIIRTKSEE 311 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhCC-------------CeEEEEEECCC--CChHHHHHHHHHHHhcCCcEEEEchHH
Confidence 468999999999999999998765321 57889999998 66778889999999999999988654
Q ss_pred -cc----cCCCCCCChHHHHHHHHHHHHHHHHHHc--CCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccc
Q 005804 161 -WL----DGRPKQGHLQEAARDMRYRLFQKVCIQH--QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (676)
Q Consensus 161 -~~----~~~~~~gn~E~~AR~iRY~~L~~~A~e~--g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~ 233 (676)
|. .+.| ..+....++..+-.-+.++.++. +....++|--.++-.. |... +.+..
T Consensus 312 f~~~~~~~G~P-~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~~-------Ra~~-------~~~~~---- 372 (479)
T PRK13794 312 FWEKLEEYGPP-ARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESFN-------RSKK-------PRIWR---- 372 (479)
T ss_pred HHHHHHhcCCC-CCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccHh-------HhcC-------ccccc----
Confidence 11 1111 11223344555555666666653 4456788877766432 1110 00000
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
.....+...+.|+++.+..||..|+..+++||
T Consensus 373 -------~~~~~~~~~~~PI~~Wt~~dVw~Yi~~~~lp~ 404 (479)
T PRK13794 373 -------NPYIKKQILAAPILHWTAMHVWIYLFREKAPY 404 (479)
T ss_pred -------ccCcCCcEEEechHhCCHHHHHHHHHHcCCCC
Confidence 00112335689999999999999999999998
No 64
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=98.94 E-value=9.1e-09 Score=103.75 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=104.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
.++++++|||+||+||++|+.+... ++.++++|+|. +-++-.+++.++++.+|++++++..++.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~~--------------~~~v~f~DTg~--efpeT~efv~~~~~~~~l~i~~~~~~~~ 77 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKISP--------------DIPVIFLDTGY--HFPETYELIDELTERYPLNIKVYKPDLS 77 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcCC--------------CCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEECCchh
Confidence 4699999999999999999975321 35688999998 7777888999999999999888765432
Q ss_pred cC------C-C-CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccc
Q 005804 163 DG------R-P-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234 (676)
Q Consensus 163 ~~------~-~-~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~ 234 (676)
.. . . -..++...|+..+-.-|.++.++++...+++|--+||-.. |-. + ..+. .
T Consensus 78 ~~~~~~~~g~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~~-------R~~----~---~~~~-~---- 138 (212)
T TIGR00434 78 LAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGPS-------RAN----L---SILN-I---- 138 (212)
T ss_pred HHHHHHhcCCCccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCcc-------ccC----C---ceee-e----
Confidence 11 0 0 0113445566666667888888887778888988776322 110 0 0000 0
Q ss_pred cccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 235 AYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 235 ~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
....+..-+.||++.+..||.+|..++|+||
T Consensus 139 -------~~~~~~~~v~PI~dWt~~dVw~Yi~~~~lp~ 169 (212)
T TIGR00434 139 -------DEKFGILKVLPLIDWTWKDVYQYIDAHNLPY 169 (212)
T ss_pred -------cCCCCcEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 0112445689999999999999999999998
No 65
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=3.6e-08 Score=105.17 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=124.0
Q ss_pred cccHHHHHHHHHHHHHH-------cCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC
Q 005804 60 LTDMTKYREAFSRRMAM-------AGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (676)
Q Consensus 60 ~~~~~~~~~~~~~~i~~-------~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL 132 (676)
..|-+||++.++..++. ....+.+.+++++|||.-|+||++.++.++.... ...-+.++. -+++++.-.+-
T Consensus 33 ~~C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k-~~~~~~~~t-v~v~~~~~~~~ 110 (396)
T KOG2594|consen 33 AFCDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLK-NKRLRRDFT-VLVLVVFQEFT 110 (396)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEecCCcchHhHHHHHHHHHHHhh-hhhcCcCCc-eEEEEEEEecc
Confidence 44678999888888776 2456778899999999999999998874433211 000122232 12222222222
Q ss_pred CCCcHHHHHHHHHHHHhc--CCeEEEEEC--ccccC----CC-CCCC--------------------hHHHHHHHHHHHH
Q 005804 133 REESKEEANIVSHRVSDM--GIRCEIVRC--DWLDG----RP-KQGH--------------------LQEAARDMRYRLF 183 (676)
Q Consensus 133 R~eS~~Eae~V~~l~~~L--GI~~~iv~~--~~~~~----~~-~~gn--------------------~E~~AR~iRY~~L 183 (676)
++....+..+++-.+. ..++.+.-+ +..+. .+ ..+| -++.-+.+|-..+
T Consensus 111 --~~~~v~e~lq~l~~~~~~~~~~~V~~la~~~~~~~~~~~~~~~~n~El~ak~~kl~~~~sv~~~srqDLl~~lk~kll 188 (396)
T KOG2594|consen 111 --DSTAVFEALQELIIDNIEWVRYVVSCLAPPEKDNHVVPVESINGNDELIAKDRKLKLSDSVPDDSRQDLLLHLKMKLL 188 (396)
T ss_pred --chHHHHHHHHHHHHhhccccceEEEecCchHhhcCcccccccCCCceeecchhhcccccccccchHHHHHHHHHHHHH
Confidence 3444455555544332 122322111 11000 00 0011 2445567888899
Q ss_pred HHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHH
Q 005804 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263 (676)
Q Consensus 184 ~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~ 263 (676)
.++|.++|++.|+.||+.+|.++-+|-.++.|.|.. ++.-. ..... ...++++++|||.++.+.||..
T Consensus 189 ~~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~s----is~~v-------~~~d~-r~~~d~~llrPLrDl~~~Ei~~ 256 (396)
T KOG2594|consen 189 QKVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGS----ISTDV-------QVVDK-RPKGDVKLLRPLRDLLSLEITS 256 (396)
T ss_pred HHHHHHcCCCEEEecCchhHHHHHHHHHHHhccCcc----ceehh-------hhhcc-ccCCCceeehhHHHHHHHHHHH
Confidence 999999999999999999999999999888887732 11100 00000 1234689999999999999999
Q ss_pred HHHhCCCce
Q 005804 264 ICQGGNRDW 272 (676)
Q Consensus 264 y~~~~gLp~ 272 (676)
|+...|++|
T Consensus 257 y~~l~~l~~ 265 (396)
T KOG2594|consen 257 YCLLDGLAY 265 (396)
T ss_pred HHHhhcCCc
Confidence 999999997
No 66
>PRK08557 hypothetical protein; Provisional
Probab=98.92 E-value=3e-08 Score=110.00 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=98.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
+..+++++|||+||+|+++++.+... ++.++|+|+|+ +..+-.++++++++++|++++++..+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~~--------------~i~vvfvDTG~--efpET~e~ve~v~~~ygl~i~v~~~~~ 244 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVIP--------------DLEVIFIDTGL--EYPETINYVKDFAKKYDLNLDTLDGDN 244 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhCC--------------CCEEEEEECCC--CCHHHHHHHHHHHHHhCCCEEEEechH
Confidence 46799999999999999998865421 46789999998 556778899999999999999886531
Q ss_pred --c----cCCCCCCChHHHHHHHHHHHHHHHHHH---cCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccc
Q 005804 162 --L----DGRPKQGHLQEAARDMRYRLFQKVCIQ---HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (676)
Q Consensus 162 --~----~~~~~~gn~E~~AR~iRY~~L~~~A~e---~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~ 232 (676)
. .+.|. .+.--.|+..+-.-+.++.++ .+....++|--.++-.. |.. ++....
T Consensus 245 f~~~~~~~G~Ps-~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~~-------Ra~-------~~~~~~--- 306 (417)
T PRK08557 245 FWENLEKEGIPT-KDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESFT-------RAN-------LDYERK--- 306 (417)
T ss_pred HHHHHhhccCCc-ccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccchh-------hcc-------Cceecc---
Confidence 1 11111 122233445555567777665 23446678877665432 111 000000
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
.... .+..-+.|+++.+..||.+|+.++++||
T Consensus 307 -------~~~~-~~~~~i~PI~~Wt~~dVW~YI~~~~lp~ 338 (417)
T PRK08557 307 -------SGFI-DFQTNVFPILDWNSLDIWSYIYLNDILY 338 (417)
T ss_pred -------cccc-cCceeEEecccCCHHHHHHHHHHcCCCC
Confidence 0000 1123469999999999999999999998
No 67
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=98.87 E-value=5.5e-08 Score=99.74 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=105.2
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
+++++++.|||+||+|+++|+.+.... .+-+|+||+|. +-++-.+++.++.+.+|+++.++....
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~~-------------~i~vv~vDTg~--~fpET~e~~d~~~~~~~~~l~v~~~~~ 89 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISEP-------------MIPVIFIDTLY--HFPQTLTLKDELTKKYYQTLNLYKYDG 89 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhCC-------------CCCEEEEeCCC--CCHHHHHHHHHHHHHhCCceEEEEeCC
Confidence 357999999999999999999875411 35689999998 677788899999999995444433221
Q ss_pred c---------cCCC-CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccc
Q 005804 162 L---------DGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (676)
Q Consensus 162 ~---------~~~~-~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf 231 (676)
. ++.. ...+++..|+..+-.-|.++.++++.+.+++|--.++-.. |. +++.+.
T Consensus 90 ~~~~~~~~~~~G~~~~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~-------Ra-------~~~~~~--- 152 (226)
T TIGR02057 90 CESEADFEAKYGKLLWQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGSA-------RA-------NLPVIE--- 152 (226)
T ss_pred chhHHHHHHhcCCCccccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCcc-------cc-------CCcccc---
Confidence 0 0000 0124566667767777888888888888999987655321 11 111110
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
.....++.-+-||++.+..||.+|..++|||+
T Consensus 153 ---------~d~~~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~ 184 (226)
T TIGR02057 153 ---------IDEQNGILKVNPLIDWTFEQVYQYLDAHNVPY 184 (226)
T ss_pred ---------ccCCCCeEEEeehhhCCHHHHHHHHHHcCCCC
Confidence 01123566789999999999999999999998
No 68
>PRK13795 hypothetical protein; Provisional
Probab=98.87 E-value=3.5e-08 Score=114.95 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=101.8
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
+++|+||+|||+||+|+++|+.+... ++.++|+|+|+ +..+..++++++++++|+++++++...
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~~--------------~~~vvfiDTg~--efpet~e~v~~~~~~~gi~i~~~~~~~ 306 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREALK--------------DFKAFFNNTGL--EFPETVENVKEVAEEYGIELIEADAGD 306 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhCC--------------CcEEEEEeCCC--CCHHHHHHHHHHHHHcCCcEEEEcccH
Confidence 46899999999999999999976421 36789999998 567788999999999999999987653
Q ss_pred ccCC--CCCC----ChHHHHHHHHHHHHHHHHHHcC--CCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccc
Q 005804 162 LDGR--PKQG----HLQEAARDMRYRLFQKVCIQHQ--IGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (676)
Q Consensus 162 ~~~~--~~~g----n~E~~AR~iRY~~L~~~A~e~g--~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~ 233 (676)
.+.. ...+ .....++..+..-+.++.++.. ....++|--.++-..-. .... +..-
T Consensus 307 ~f~~~~~~~g~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~~R~-------~~~~-~~~~--------- 369 (636)
T PRK13795 307 AFWRAVEKFGPPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESFSRA-------KSPR-VWRN--------- 369 (636)
T ss_pred hHHHhhhccCCCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchHHHh-------hCcc-cccC---------
Confidence 2211 0111 1222344444555666666652 23667888887754321 1000 0000
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
....+...+.|+++.+..||..|...+++||.
T Consensus 370 --------~~~~~~~~~~PI~~Wt~~dVw~YI~~~~lp~n 401 (636)
T PRK13795 370 --------PWVPNQIGASPIQDWTALEVWLYIFWRKLPYN 401 (636)
T ss_pred --------CCCCCcEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 00123356899999999999999999999983
No 69
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.85 E-value=4.7e-08 Score=99.69 Aligned_cols=139 Identities=13% Similarity=0.080 Sum_probs=96.1
Q ss_pred EEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEE-EEEEECCCCC----CcHHHHHHHHHHHHhcCCeEEEEECc
Q 005804 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL-AITVDHGLRE----ESKEEANIVSHRVSDMGIRCEIVRCD 160 (676)
Q Consensus 86 lVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~-aVhVDHGLR~----eS~~Eae~V~~l~~~LGI~~~iv~~~ 160 (676)
++++|||+||+++++++.+ .|. ++. ++|++.. +. ....+.+.++++|+.+|||+++++++
T Consensus 1 ~vl~SGGkDS~~al~~a~~---~G~-----------~v~~l~~~~~~-~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALE---EGH-----------EVRCLITVVPE-NEESYMFHTPNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CeeecCcHHHHHHHHHHHH---cCC-----------EEEEEEEeccC-CCCccccCCCCHHHHHHHHHHhCCCEEEEECC
Confidence 4789999999999988864 332 565 4466532 11 12236677889999999999998875
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccccc
Q 005804 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHD 240 (676)
Q Consensus 161 ~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~ 240 (676)
+. . ..+. ..-+.++.+++++ |++.|++|.+.+|..-+-..+++..
T Consensus 66 ~~-----~-~~~~---~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~v~~~------------------------- 110 (218)
T TIGR03679 66 GE-----K-EKEV---EDLKGALKELKRE-GVEGIVTGAIASRYQKSRIERICEE------------------------- 110 (218)
T ss_pred CC-----C-hHHH---HHHHHHHHHHHHc-CCCEEEECCcccHhHHHHHHHHHHh-------------------------
Confidence 31 0 1111 1134455555555 9999999999988655444444322
Q ss_pred cccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCC
Q 005804 241 DLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278 (676)
Q Consensus 241 ~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN 278 (676)
.++.++.||...+|.|+.+-+...|+..+.-..+
T Consensus 111 ----~gl~~~~PLw~~~~~el~~~~~~~G~~~~i~~v~ 144 (218)
T TIGR03679 111 ----LGLKVFAPLWGRDQEEYLRELVERGFRFIIVSVS 144 (218)
T ss_pred ----CCCeEEeehhcCCHHHHHHHHHHCCCEEEEEEEe
Confidence 3467999999999999999999999988654444
No 70
>PRK05370 argininosuccinate synthase; Validated
Probab=98.83 E-value=4.1e-08 Score=108.56 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=110.1
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEE
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIV 157 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv 157 (676)
+.+++||++|+|||.||++++..|++ +++ +|+|+++|-|.- ..+|.+.+++-|.++|. +++++
T Consensus 8 l~~~~KVvLAYSGGLDTSv~l~wL~e---~~~-----------eVia~~aDvGQ~--~~ed~~~i~~kA~~~GA~~~~vi 71 (447)
T PRK05370 8 LPVGQRVGIAFSGGLDTSAALLWMRQ---KGA-----------VPYAYTANLGQP--DEDDYDAIPRRAMEYGAENARLI 71 (447)
T ss_pred CCCCCEEEEEecCCchHHHHHHHHHh---cCC-----------eEEEEEEECCCC--CccchHHHHHHHHHhCCCEEEEe
Confidence 55789999999999999999988764 232 799999999952 13467788999999998 79999
Q ss_pred ECccccCC---C-CCCC-------------hHHHHHHHHHHHHHHHHHHcCCCEEeeccc--cchhHHHHHHHhhcCCCC
Q 005804 158 RCDWLDGR---P-KQGH-------------LQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSGV 218 (676)
Q Consensus 158 ~~~~~~~~---~-~~gn-------------~E~~AR~iRY~~L~~~A~e~g~~~LatGHh--aDDqaET~LmrL~RGsG~ 218 (676)
++...+.. + .+.| .-..+|.+--..+-++|++.|+++|+.|-+ -+||+-.-+
T Consensus 72 Dlr~eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~--------- 142 (447)
T PRK05370 72 DCRAQLVAEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYR--------- 142 (447)
T ss_pred ccHHHHHHHHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHH---------
Confidence 98765421 1 0011 112356666677889999999999998886 578864221
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCC-------CHHHHHHHHHhCCCceeeC
Q 005804 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF-------SKDDMYKICQGGNRDWVED 275 (676)
Q Consensus 219 ~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~l-------sK~EIr~y~~~~gLp~veD 275 (676)
.+..+. ..+.++-|.+++ +|+|..+||+++|||.-.+
T Consensus 143 -~~~aL~-------------------P~l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~~ 186 (447)
T PRK05370 143 -YGLLTN-------------------PELKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKMS 186 (447)
T ss_pred -HHHHhC-------------------CCCeEecchhhhhcccccCCHHHHHHHHHHcCCCCCcc
Confidence 011111 245789998874 8999999999999997433
No 71
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.83 E-value=9.5e-08 Score=102.97 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH
Q 005804 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (676)
Q Consensus 64 ~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V 143 (676)
+.+.+.|+..+.... ..++|+|++|||+||+++++++.+..+. .++++++++.+. .+.+|.+.+
T Consensus 17 e~i~~~l~~~V~~~~--~~~~VvVgLSGGIDSSvvaaLa~~a~g~------------~~v~av~~~~~~--s~~~e~~~A 80 (326)
T PRK00876 17 ERIRAAIREQVRGTL--RRRGVVLGLSGGIDSSVTAALCVRALGK------------ERVYGLLMPERD--SSPESLRLG 80 (326)
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEccCCHHHHHHHHHHHHhhCC------------CcEEEEEecCCC--CChHHHHHH
Confidence 344444455554421 2248999999999999999998764321 168899998875 457788999
Q ss_pred HHHHHhcCCeEEEEECcc
Q 005804 144 SHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~ 161 (676)
+.+|+.+|+++++++++.
T Consensus 81 ~~lA~~LGi~~~~i~i~~ 98 (326)
T PRK00876 81 REVAEHLGVEYVVEDITP 98 (326)
T ss_pred HHHHHHcCCCEEEEECch
Confidence 999999999999998764
No 72
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.82 E-value=4.4e-08 Score=114.88 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=105.9
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEEC
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~-g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~ 159 (676)
..++|+||+|||+||++++.++.++... +. ...++++|++ .+ +..|+...+.++++|+.+||+++++++
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~--------~~~~v~~v~m-p~-~~ss~~s~~~a~~la~~LGi~~~~i~I 429 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGL--------PRKNILAYTM-PG-FATTDRTKNNAVALMKALGVTAREIDI 429 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCC--------CcceEEEEEC-CC-CCCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 3689999999999999988888776432 11 0137899998 44 356777888999999999999999987
Q ss_pred cccc------CCCC--------CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccc
Q 005804 160 DWLD------GRPK--------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (676)
Q Consensus 160 ~~~~------~~~~--------~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~ 225 (676)
+... .... .-..|..+-++|..+|..+|.+.|+.+|+|| |..|+.++.....- |
T Consensus 430 ~~~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg----n~sE~~~Gy~T~~~------G-- 497 (679)
T PRK02628 430 RPAALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG----DLSELALGWCTYGV------G-- 497 (679)
T ss_pred HHHHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC----chhhHHhCceecCC------C--
Confidence 5321 0010 0023445677888999999999999889888 77887753222110 0
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005804 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (676)
Q Consensus 226 ~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (676)
...--+-|+-+++|.+|+++++..+
T Consensus 498 -------------------D~~~~~~~~~~l~Kt~v~~l~~~~~ 522 (679)
T PRK02628 498 -------------------DHMSHYNVNASVPKTLIQHLIRWVI 522 (679)
T ss_pred -------------------CcccccccccCCcHHHHHHHHHHHH
Confidence 1122467889999999999998774
No 73
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=98.76 E-value=6.1e-08 Score=105.89 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=103.5
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHH-Hhc-----CCe
Q 005804 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRV-SDM-----GIR 153 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~-~~L-----GI~ 153 (676)
.-..++++-+|||.||-|+++++. +.|. ++.++|++.+-- .+..-.+.+..++ ..+ .+.
T Consensus 173 Gt~Gk~l~LlSGGIDSPVA~~l~m---kRG~-----------~v~~v~f~~~p~-~~~~a~~k~~~l~~~~~~~~~~~~~ 237 (383)
T COG0301 173 GTQGKVLLLLSGGIDSPVAAWLMM---KRGV-----------EVIPVHFGNPPY-TSEKAREKVVALALLRLTSYGGKVR 237 (383)
T ss_pred ccCCcEEEEEeCCCChHHHHHHHH---hcCC-----------EEEEEEEcCCCC-chHHHHHHHHHHHhhhhcccCCceE
Confidence 345799999999999999999884 4443 788999965321 2222233333333 222 356
Q ss_pred EEEEECccccCC----CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccc
Q 005804 154 CEIVRCDWLDGR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229 (676)
Q Consensus 154 ~~iv~~~~~~~~----~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~ 229 (676)
++++++...... ...+...-.+|++.|+.-.++|++.|+..|+||-....++-..+-|| ..+..+
T Consensus 238 ~~~v~f~~v~~~i~~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL---------~~i~~~-- 306 (383)
T COG0301 238 LYVVPFTEVQEEILEKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENL---------RVIDSV-- 306 (383)
T ss_pred EEEEchHHHHHHHHhhcCccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHHH---------HHHHhc--
Confidence 666665432110 11123455789999999999999999999999999999887665433 222222
Q ss_pred ccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC
Q 005804 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR 270 (676)
Q Consensus 230 lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL 270 (676)
-+..++|||+.+.|+||.+++++.|-
T Consensus 307 ---------------t~~pIlRPLI~~DK~eIi~~Ar~IgT 332 (383)
T COG0301 307 ---------------TNTPVLRPLIGLDKEEIIEIARRIGT 332 (383)
T ss_pred ---------------cCCceeccccCCCHHHHHHHHHHhCC
Confidence 13469999999999999999999984
No 74
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.71 E-value=2.6e-08 Score=102.55 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=79.7
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEEC
Q 005804 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~ 159 (676)
..+.+|++++|||.||+++++++.+.... .+.+++++++.. ..+|.+.++++|+.+|++++++.+
T Consensus 13 ~~~~~v~~~LSGGlDSs~va~~~~~~~~~-------------~~~~~~~~~~~~--~~~e~~~a~~~a~~l~~~~~~~~~ 77 (269)
T cd01991 13 RSDVPVGVLLSGGLDSSLVAALAARLLPE-------------PVKTFSIGFGFE--GSDEREYARRVAEHLGTEHHEVEF 77 (269)
T ss_pred ccCCceEEeecccHHHHHHHHHHHHhhCC-------------CCceEEEeeCCC--CCChHHHHHHHHHHhCCcceEEEc
Confidence 44588999999999999999988754221 256788888753 345688899999999999999987
Q ss_pred ccccCCCC-------CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhH
Q 005804 160 DWLDGRPK-------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (676)
Q Consensus 160 ~~~~~~~~-------~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa 205 (676)
+....... ..++...+-.....++.+.+++.|+.++++||.+|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 78 TPADLLAALPDVIWELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhCCEEEEecCCccccc
Confidence 64321100 01122222345556788889999999999999999864
No 75
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.68 E-value=1.7e-07 Score=98.11 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=106.0
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
..+++++|||+||+|+++|+.+... ++.++|+|+|+ +-.+-.+++.++++++|+++.+...+..
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~k~~~--------------~~~vif~DTg~--~f~Et~~~~d~~~~~~~~~l~~~~~~~~ 103 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAAKAFP--------------DFPVIFLDTGY--HFPETYEFRDRLAEEYGLDLKVYRPDDE 103 (261)
T ss_pred CCeEEEecCchhHHHHHHHHHHhcC--------------CCcEEEEeCCC--cCHHHHHHHHHHHHHcCCeEEEecCccc
Confidence 3489999999999999999976532 35689999998 6677889999999999999888765533
Q ss_pred cCCC---C----CCChHH-HHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccc
Q 005804 163 DGRP---K----QGHLQE-AARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSY 234 (676)
Q Consensus 163 ~~~~---~----~gn~E~-~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~ 234 (676)
.... . ..+... .|...+-.-|.++-++++.+.+++|--.|+... | +.++.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~-------R-------ak~~~~~~----- 164 (261)
T COG0175 104 VAEGEKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPT-------R-------AKLPVVSF----- 164 (261)
T ss_pred hhhhhhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEecccccccc-------c-------ccCceecc-----
Confidence 2211 0 112222 344555566888888888889999977766432 2 11222110
Q ss_pred cccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 235 AYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 235 ~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
.....+..-+-||++.+..||..|...+++||
T Consensus 165 ------~~~~~~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~ 196 (261)
T COG0175 165 ------DSEFGESIRVNPLADWTELDVWLYILANNLPY 196 (261)
T ss_pred ------ccCcCCeEEEcchhcCCHHHHHHHHHHhCCCC
Confidence 01111356789999999999999999999998
No 76
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=98.67 E-value=1.2e-07 Score=103.95 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=92.3
Q ss_pred EEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECccccC
Q 005804 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLDG 164 (676)
Q Consensus 86 lVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~~~~~ 164 (676)
++|+|||.||++++.+|++ ++ + .+|+|+++|-|. ..+|.+.+++-|.++|. +++++++...+.
T Consensus 1 VLAySGGLDTS~~l~~L~e---~~--------~--~~Via~~aDlGq---~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKE---EG--------G--YEVIAVTADLGQ---PDEDLEAIEEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp EEE--SSHHHHHHHHHHHH---TT--------T--EEEEEEEEESSS---T-S-HHHHHHHHHHHT-SEEEEEE-HHHHH
T ss_pred CeeeCCChHHHHHHHHHHh---hc--------C--ceEEEEEEECCC---cHHHHHHHHHHHHhcCCceeeecchHHHHH
Confidence 6899999999999988764 22 1 289999999997 24678889999999997 999999876542
Q ss_pred CC-----------CCC-Ch--HHHHHHHHHHHHHHHHHHcCCCEEeecccc--chhHHHHHHHhhcCCCCCCcccccccc
Q 005804 165 RP-----------KQG-HL--QEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGMAFSS 228 (676)
Q Consensus 165 ~~-----------~~g-n~--E~~AR~iRY~~L~~~A~e~g~~~LatGHha--DDqaET~LmrL~RGsG~~GLaGm~~v~ 228 (676)
.. -.+ -+ -..+|.+--+.+-++|++.|+++|+.|-+. +||+-.-+. +..+
T Consensus 65 ~~~i~~aI~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~----------~~al---- 130 (388)
T PF00764_consen 65 EDYIFPAIKANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELS----------IRAL---- 130 (388)
T ss_dssp HHTHHHHHHTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHH----------HHHH----
T ss_pred HHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHH----------HHHh----
Confidence 10 001 00 123576666778899999999999988764 888742210 1111
Q ss_pred cccccccccccccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeCC
Q 005804 229 QIFSSYAYSCHDDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVEDP 276 (676)
Q Consensus 229 ~lf~~~~~~~~~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veDp 276 (676)
...++++-|.++ ++|+|..+|++++|||....+
T Consensus 131 ---------------~P~l~viaP~Rd~~~~R~~~i~ya~~~gIpv~~~~ 165 (388)
T PF00764_consen 131 ---------------APELKVIAPWRDWEFSREEEIEYAKKHGIPVPVTK 165 (388)
T ss_dssp ---------------STTSEEE-GGGHHHHHHHHHHHHHHHTT----SS-
T ss_pred ---------------CcCCcEecccchhhhhHHHHHHHHHHcCCCCCCCC
Confidence 124578888876 789999999999999875543
No 77
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.64 E-value=3.3e-07 Score=99.30 Aligned_cols=149 Identities=14% Similarity=0.196 Sum_probs=110.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCe-EEEEECc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCD 160 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~-~~iv~~~ 160 (676)
.+||++|+|||.|++|++-+|.+ ++ | .+++++++|-|. ..+|.+.+++-|.++|.. ++++++.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e---~~--------~--~eVia~tadvGQ---~eed~~~i~eKA~~~Ga~~~~viD~r 67 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKE---KG--------G--AEVIAVTADVGQ---PEEDLDAIREKALELGAEEAYVIDAR 67 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHH---hc--------C--ceEEEEEEeCCC---ChHHhHHHHHHHHHhCCceEEEeecH
Confidence 48999999999999999887753 21 1 289999999996 367889999999999976 9999987
Q ss_pred cccCCC-------CC----C---ChHHHHHHHHHHHHHHHHHHcCCCEEeecccc--chhHHHHHHHhhcCCCCCCcccc
Q 005804 161 WLDGRP-------KQ----G---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGM 224 (676)
Q Consensus 161 ~~~~~~-------~~----g---n~E~~AR~iRY~~L~~~A~e~g~~~LatGHha--DDqaET~LmrL~RGsG~~GLaGm 224 (676)
..|... .. + ..-..||-+--+.+-++|++.|++.|+-|-+. +||+-.- ++..
T Consensus 68 eeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQvRFe------------~~~~ 135 (403)
T COG0137 68 EEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFE------------LAIL 135 (403)
T ss_pred HHHHHHHHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCceeeee------------eehh
Confidence 655310 00 0 11235677777788999999999999888763 5665311 0000
Q ss_pred cccccccccccccccccccCCCeEEEeeCCC--CCHHHHHHHHHhCCCceeeC
Q 005804 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLD--FSKDDMYKICQGGNRDWVED 275 (676)
Q Consensus 225 ~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~--lsK~EIr~y~~~~gLp~veD 275 (676)
.-+.++++|-|.++ ++|+|..+|++++|||.-.+
T Consensus 136 -----------------al~p~lkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 136 -----------------ALNPDLKIIAPWREWNLTREEEIEYAEEHGIPVKAT 171 (403)
T ss_pred -----------------hhCCCcEEEeehhhhccChHHHHHHHHHcCCCcccc
Confidence 11346789999875 78999999999999998665
No 78
>PRK13981 NAD synthetase; Provisional
Probab=98.64 E-value=3.6e-07 Score=104.55 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHH
Q 005804 63 MTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~~-i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae 141 (676)
.+++.+.+...+.+.. -...++++||+|||+||+++++|+.+..+. .+++++++.... .+..+.+
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~------------~~v~~~~~p~~~--~~~~~~~ 325 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA------------ERVRAVMMPSRY--TSEESLD 325 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc------------CcEEEEECCCCC--CCHHHHH
Confidence 3455555444333322 123478999999999999999998765432 158888887543 3456778
Q ss_pred HHHHHHHhcCCeEEEEECccccC------CC----CCC--ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHH
Q 005804 142 IVSHRVSDMGIRCEIVRCDWLDG------RP----KQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (676)
Q Consensus 142 ~V~~l~~~LGI~~~iv~~~~~~~------~~----~~g--n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~L 209 (676)
.++++|+.+|+++++++++..+. .. ... ..+....++|-..+..+|..+|+-+|.||+--.. .+
T Consensus 326 ~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~sE~----~~ 401 (540)
T PRK13981 326 DAAALAKNLGVRYDIIPIEPAFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEM----AV 401 (540)
T ss_pred HHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCccCHH----Hc
Confidence 88999999999999998764221 00 000 1233345677788999999988866666653322 11
Q ss_pred HHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005804 210 LRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (676)
Q Consensus 210 mrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (676)
|...+.| + +.--+-|+.+++|.+|+++++.+|
T Consensus 402 -------Gy~t~~G--------------------D-~~~~~~pi~~l~K~~v~~la~~~~ 433 (540)
T PRK13981 402 -------GYATLYG--------------------D-MAGGFAPIKDVYKTLVYRLCRWRN 433 (540)
T ss_pred -------CCeEecC--------------------C-cccCccccCCCCHHHHHHHHHHHH
Confidence 1111111 1 112478999999999999999887
No 79
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.1e-07 Score=91.94 Aligned_cols=165 Identities=15% Similarity=0.227 Sum_probs=105.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
+|-+-+|||+||+.+|++|.++ |+ ++..|+||+|+-+ ..+.+++.|+.+|.||.++.++-.-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl---gy-----------ev~LVTvnFGv~d----~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL---GY-----------EVELVTVNFGVLD----SWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHh---CC-----------CcEEEEEEecccc----chhhHHHHHHHhCCCcceeccCHHH
Confidence 4778999999999999988653 22 7899999999843 3467788889999999999876321
Q ss_pred CCC------CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccc
Q 005804 164 GRP------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (676)
Q Consensus 164 ~~~------~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~ 237 (676)
... ..|-|-.+-..+--.+++-+|.. .++.|+-|+-.||.+-+.-. ...+.+
T Consensus 64 le~A~em~iedg~P~~aIq~iH~~alE~~A~r-~~~~iaDGTRRDDrvP~ls~--------------~~~qSL------- 121 (198)
T COG2117 64 LEDAVEMIIEDGYPRNAIQYIHEMALEALASR-EVDRIADGTRRDDRVPKLSR--------------SEAQSL------- 121 (198)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHcCCCcccccCccccH--------------HHHhhH-------
Confidence 100 00101111122223456666665 57889999999997764411 111111
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCC--chhHHHHHHhhhh
Q 005804 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSP--LFVRNRIRMSLGD 294 (676)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~--~y~RNrIR~~L~~ 294 (676)
..+.++..++||+.+-+.-|+.++...=+ .-+-||...+ .| -.-+|..|..
T Consensus 122 ----EdR~nv~Yi~PL~G~G~kti~~Lv~~~f~-~e~~~Se~~~k~DY-EaElR~lL~e 174 (198)
T COG2117 122 ----EDRLNVQYIRPLLGLGYKTIRRLVSAIFI-LEEGPSEKIEKADY-EAELRYLLRE 174 (198)
T ss_pred ----HHhcCceeecccccccHHHHHHHHHHHee-eeccccccccccch-HHHHHHHHHH
Confidence 24568899999999999999998876422 2233444332 45 2345555543
No 80
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.54 E-value=4e-07 Score=91.85 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHH
Q 005804 65 KYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144 (676)
Q Consensus 65 ~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~ 144 (676)
|+++.|.+.+... +..+.+|.+.+|||.||.+++.++.+. .+ ..+.+++++.+-. ...|...++
T Consensus 1 ~~r~~l~~av~~r-l~~~~~i~~~LSGGlDSs~i~~~~~~~--~~-----------~~~~~~t~~~~~~--~~~e~~~a~ 64 (255)
T PF00733_consen 1 ELRELLEEAVARR-LRSDKPIGILLSGGLDSSAIAALAARQ--GG-----------PPIKTFTIGFEDD--DYDEREYAR 64 (255)
T ss_dssp HHHHHHHHHHHHH-CGCTSEEEEE--SSHHHHHHHHHHHHT--CC-----------SEEEEEEEECSSC--C--HHHHHH
T ss_pred CHHHHHHHHHHHH-HhcCCCEEEECCCChhHHHHHHHHHHh--hC-----------CceeEEEEEcCCC--cchhHHHHH
Confidence 4556666655543 335689999999999999999998761 11 1678888888753 333888999
Q ss_pred HHHHhcCCeEEEEECccccCCC-------CCCChHH--HHHHHHHHHHHHHHHHcCCCEEeeccccchhH
Q 005804 145 HRVSDMGIRCEIVRCDWLDGRP-------KQGHLQE--AARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (676)
Q Consensus 145 ~l~~~LGI~~~iv~~~~~~~~~-------~~gn~E~--~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa 205 (676)
++++.+|++++.+..+...... ....+.. .+-.+-+..+.+.+++.|.+.+++||-.|...
T Consensus 65 ~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf 134 (255)
T PF00733_consen 65 KVARHLGLEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELF 134 (255)
T ss_dssp HHHHHHT-EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHH
T ss_pred HHhcccccccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEecccccccc
Confidence 9999999999888776432100 0011111 22223334466777788999999999998754
No 81
>PRK06850 hypothetical protein; Provisional
Probab=98.43 E-value=6.2e-06 Score=93.49 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHH-------HHHHHHHHhcCCe
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA-------NIVSHRVSDMGIR 153 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Ea-------e~V~~l~~~LGI~ 153 (676)
.+..++||+|||+||+|++.|+.++..... . .+-.-.+++++.|.|+ |..+-. +.++..+++.|+|
T Consensus 33 ~~~P~vV~fSGGKDStavL~Lv~~Al~~lp-~----e~r~k~v~Vi~~DTgv--E~Pe~~~~v~~~l~~i~~~a~~~glp 105 (507)
T PRK06850 33 DNRPWVIGYSGGKDSTAVLQLVWNALAGLP-P----EKRTKPVYVISSDTLV--ENPVVVDWVNKSLERINEAAKKQGLP 105 (507)
T ss_pred CCCCeEEeCCCCchHHHHHHHHHHHHHhcc-h----hccCCcEEEEECCCCC--ccHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 356789999999999999999877654211 0 0011258889999998 555433 4445567788999
Q ss_pred EEEEECccc----c-------CCC-CCCChHHHHHHHHH----HHHHHHHHHcCCCEEeeccccchhHHHHH-HHhhcCC
Q 005804 154 CEIVRCDWL----D-------GRP-KQGHLQEAARDMRY----RLFQKVCIQHQIGVLLIAHHADDQAELFI-LRLSRNS 216 (676)
Q Consensus 154 ~~iv~~~~~----~-------~~~-~~gn~E~~AR~iRY----~~L~~~A~e~g~~~LatGHhaDDqaET~L-mrL~RGs 216 (676)
+.+..+... | +.| .....--.+..++. +++.+..+++|-..+++|.-.+.-+.--- |......
T Consensus 106 i~~~~v~P~~~~sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~~RA~~m~~~~~~ 185 (507)
T PRK06850 106 ITPHKLTPKINDTFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESAARAQVMAKHEIE 185 (507)
T ss_pred eEEEeeCCCcchhHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccHHHHhhhhhhccc
Confidence 876443211 0 011 00000001112222 23444555667778899987765433111 1110111
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceee
Q 005804 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE 274 (676)
Q Consensus 217 G~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ve 274 (676)
+ ..+.-+ +...+...+.|+.+.+-+||..|....+.||-.
T Consensus 186 ~-~rl~~~-----------------~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~ 225 (507)
T PRK06850 186 G-SRLSRH-----------------TTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGG 225 (507)
T ss_pred C-cceeec-----------------cCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCC
Confidence 0 001100 112345689999999999999999999999953
No 82
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.42 E-value=2.8e-06 Score=89.35 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=98.8
Q ss_pred HHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHH
Q 005804 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVS 148 (676)
Q Consensus 70 ~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~-g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~ 148 (676)
++..+.+. ..+.++||+|||.||.+.+.|+.++.+. +.. ..+....++++..-+. +..+.+.++.+|+
T Consensus 29 L~~~l~~~---g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~----~~~~~~~~~~l~mP~~----~~~~~~da~~la~ 97 (268)
T PRK00768 29 LKDYLKKS---GLKSLVLGISGGQDSTLAGRLAQLAVEELRAE----TGDDDYQFIAVRLPYG----VQADEDDAQDALA 97 (268)
T ss_pred HHHHHHHc---CCCeEEEECCCCHHHHHHHHHHHHHHHHhccc----ccCcceeEEEEECCCC----CcCCHHHHHHHHH
Confidence 34444443 3478999999999999999988877552 210 0001113455444332 1223456677889
Q ss_pred hcCC-eEEEEECccccC------CCCC--C---ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCC
Q 005804 149 DMGI-RCEIVRCDWLDG------RPKQ--G---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS 216 (676)
Q Consensus 149 ~LGI-~~~iv~~~~~~~------~~~~--g---n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGs 216 (676)
.+|+ ++.+++++.... .... . ..+...-++|-..+..+|...|+ +++|+. +..|.. -|-
T Consensus 98 ~lgi~~~~~i~I~~~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~--lvlgT~--N~sE~~-----~Gy 168 (268)
T PRK00768 98 FIQPDRVLTVNIKPAVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGG--LVVGTD--HAAEAV-----TGF 168 (268)
T ss_pred hcCCCeeEEEECHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCC--EEEcCC--cccHHH-----hCc
Confidence 9999 798888763210 0100 0 11223345677778888888765 666653 223322 121
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCC
Q 005804 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRS 280 (676)
Q Consensus 217 G~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d 280 (676)
...- .+ +.--+-|+.+++|.||+++++.+|+| .++.|...+
T Consensus 169 --~Tky--------------------GD-~~~d~~pi~~L~KteV~~La~~l~vP~~ii~k~Psa~ 211 (268)
T PRK00768 169 --FTKF--------------------GD-GGADILPLFGLNKRQGRALLAALGAPEHLYEKVPTAD 211 (268)
T ss_pred --eecc--------------------CC-ccccchhhcCCcHHHHHHHHHHhCCCHHHhcCCCCCC
Confidence 1111 11 12357899999999999999999998 555544443
No 83
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.36 E-value=6.3e-06 Score=86.72 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~ 145 (676)
.+.-++.++... ..++++||+|||+||++.+.|+.++.+.+. ...++.++...++- -...+.+.+..
T Consensus 12 ~~~fl~~~l~~~---~~k~~VlGiSGGiDSa~~~~La~~A~~~~~--------~~~~~~av~mP~~~--~~~~~~~da~~ 78 (268)
T COG0171 12 LVDFLRDYLKKA---GFKGVVLGLSGGIDSALVLALAVRALGKGD--------SKENVLAVRLPYGY--TVQADEEDAQD 78 (268)
T ss_pred HHHHHHHHHHHc---CCCCeEEEcccChHHHHHHHHHHHHhcccc--------chhheeeEECCCCC--ccccCHHHHHH
Confidence 334445555543 236799999999999999999988765411 11257888888872 03445566778
Q ss_pred HHHhcCCeEEEEECccccC---C---C-CCC------ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHh
Q 005804 146 RVSDMGIRCEIVRCDWLDG---R---P-KQG------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL 212 (676)
Q Consensus 146 l~~~LGI~~~iv~~~~~~~---~---~-~~g------n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL 212 (676)
+++.+|+....+++..... . . ..+ ..+...-+.|..++..+|.++|. +++|+ ++..|-.+
T Consensus 79 ~~~~lg~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~--lVlGT--gn~sE~~~--- 151 (268)
T COG0171 79 LAEALGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGG--LVLGT--GNKSELAL--- 151 (268)
T ss_pred HHHHhCCceEEEecHHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCC--EEEcC--CcHHHHhc---
Confidence 8899999977777643211 1 0 101 12222346677788888888765 55555 33455432
Q ss_pred hcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc
Q 005804 213 SRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271 (676)
Q Consensus 213 ~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp 271 (676)
|- ... ..+++ .=+-|+.+++|.+|+++++..|+|
T Consensus 152 --Gy--~Tk--------------------yGDg~-~d~~Pi~~L~KtqV~~La~~l~ip 185 (268)
T COG0171 152 --GY--FTK--------------------YGDGA-VDINPIADLYKTQVYALARHLGIP 185 (268)
T ss_pred --Cc--eec--------------------ccCcc-cChhhhcCCcHHHHHHHHHHcCCC
Confidence 21 100 01222 347799999999999999999998
No 84
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.36 E-value=9e-06 Score=91.08 Aligned_cols=168 Identities=16% Similarity=0.168 Sum_probs=97.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHH-------HHHHHHHhcCCeE
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN-------IVSHRVSDMGIRC 154 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae-------~V~~l~~~LGI~~ 154 (676)
+...+||+|||+||+|++.|+.++.... +. .+..-.+++++.|.|. |..+-.+ .+++.+++.|+|+
T Consensus 13 ~~p~vV~fSGGKDSta~L~Lv~~Al~~l-p~----e~~~k~v~VI~~DTgv--E~Pe~~~~v~~~l~~i~~~a~~~~lpi 85 (447)
T TIGR03183 13 DIPWVVGYSGGKDSTAVLQLIWNALAAL-PA----EQRTKKIHVISTDTLV--ENPIVAAWVNASLERMQEAAQDQGLPI 85 (447)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHHhc-cc----cccCcceEEEECcCCC--ccHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 4668999999999999999988765321 10 0111257888899998 5554333 3455678888887
Q ss_pred EEEECcccc-----------CCCC-CCChHHHHHHHHH----HHHHHHHHHcCCCEEeeccccchhHHHHH-HHhhcCCC
Q 005804 155 EIVRCDWLD-----------GRPK-QGHLQEAARDMRY----RLFQKVCIQHQIGVLLIAHHADDQAELFI-LRLSRNSG 217 (676)
Q Consensus 155 ~iv~~~~~~-----------~~~~-~gn~E~~AR~iRY----~~L~~~A~e~g~~~LatGHhaDDqaET~L-mrL~RGsG 217 (676)
.+..+.... +.|. .....-.+..++- +++.+..++.|-..+++|.-.+.-+.--- |.-..++.
T Consensus 86 ~~~~v~P~~~~~Fwv~liGrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~~RA~~m~k~e~~~ 165 (447)
T TIGR03183 86 EPHRLTPEIKDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQARAAVMEKHESGS 165 (447)
T ss_pred EEEecCCCcchHHHHHHhcCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHHHHHhhhhhhcccc
Confidence 764432110 0110 0111111112222 34555666677788999988765433111 11001111
Q ss_pred C-CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 218 V-LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 218 ~-~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
. ..++- .....+...+.|+.+.+-+||..|....+.||-
T Consensus 166 ~r~~l~~-----------------~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g 205 (447)
T TIGR03183 166 LRDRLSR-----------------NSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWG 205 (447)
T ss_pred ccccccc-----------------cCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCC
Confidence 1 01110 011235578999999999999999999999984
No 85
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.33 E-value=1.6e-06 Score=97.35 Aligned_cols=129 Identities=13% Similarity=0.130 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHc---CCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHH
Q 005804 63 MTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~---~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~E 139 (676)
.++..+.+++.+.++ .+..+.+|.+.+|||.||++++.++.+.... ..+.+++|+++-. ...+|
T Consensus 231 ~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~------------~~~~~~t~~~~~~-~~~~E 297 (467)
T TIGR01536 231 EEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPR------------GPVHTFSIGFEGS-PDFDE 297 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCC------------CCceEEEEecCCC-CCCCh
Confidence 344444444443322 2445678999999999999999988654221 0467888887621 12356
Q ss_pred HHHHHHHHHhcCCeEEEEECccccCCC-------CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchh
Q 005804 140 ANIVSHRVSDMGIRCEIVRCDWLDGRP-------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (676)
Q Consensus 140 ae~V~~l~~~LGI~~~iv~~~~~~~~~-------~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDq 204 (676)
...++++|+.+|++++++.++...... ....+......+...++.+.+++.|++++++|+.+|+.
T Consensus 298 ~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~l~~~a~~~G~~vlltG~GaDEl 369 (467)
T TIGR01536 298 SPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYHLEDPTTIRASIPLYLLSKLAREDGVKVVLSGEGADEL 369 (467)
T ss_pred HHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhcCCEEEEecCcchhc
Confidence 778999999999999998875321100 00011112223334467888999999999999999985
No 86
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=98.16 E-value=7.6e-06 Score=82.67 Aligned_cols=154 Identities=19% Similarity=0.134 Sum_probs=102.5
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
-+++||+|||+||++.+..+.. .+++||.|---..+.-.+.+.++|..+|+....+..+..
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~-------------------~g~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~ 121 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRW-------------------AGFTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLE 121 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHh-------------------hceeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHH
Confidence 6899999999999998877642 136888885323334445567788889987766544322
Q ss_pred cCC----CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccc
Q 005804 163 DGR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (676)
Q Consensus 163 ~~~----~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~ 238 (676)
... .....+|-.|..+-.....+.+++.+++.+++|.-+. .|+| ++.
T Consensus 122 ~i~kGalnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDlLs-----------~G~~-----svy------------- 172 (255)
T COG1365 122 DIEKGALNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDLLS-----------TGYG-----SVY------------- 172 (255)
T ss_pred HHHhhhccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccccc-----------cccc-----cee-------------
Confidence 111 1123688888888888888999999999999996432 3332 111
Q ss_pred cccccCCCeEEEee-CCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHH
Q 005804 239 HDDLKNHSILLVRP-LLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM 290 (676)
Q Consensus 239 ~~~~~~~~i~IIRP-LL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~ 290 (676)
.+++-+.+--| ++.++|+|++.++..+|+.. .-++...+.|-..++
T Consensus 173 ---~eD~i~rlnlPAflAltK~Elr~il~~~~~e~---~~kygCPll~e~hkr 219 (255)
T COG1365 173 ---REDGIFRLNLPAFLALTKDELRSILKWNGYEL---EMKYGCPLLREVHKR 219 (255)
T ss_pred ---ccCCEEEEccHHHHhhCcHHHHHHHHhcCccc---hhccCCchHHHHHHh
Confidence 23343444344 57799999999999999755 344454555544433
No 87
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=98.06 E-value=0.00013 Score=75.09 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=88.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC----cHHHHHHHHHHHHhcCCeEEEEEC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE----SKEEANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e----S~~Eae~V~~l~~~LGI~~~iv~~ 159 (676)
|+++.+|||+||+.+++.+.+. + ++.+++.-.....+ .....+.++..|+.+|||++....
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~-----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~ 66 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----H-----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYT 66 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----C-----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEc
Confidence 6899999999999999877542 1 34454432222111 112446778899999999987765
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccc
Q 005804 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (676)
Q Consensus 160 ~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~ 239 (676)
++. .++. .+-|.+..++.|++.|++|....+--.+..-+++...
T Consensus 67 ~~~--------~e~~-----~~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~----------------------- 110 (222)
T TIGR00289 67 SGE--------EEKE-----VEDLAGQLGELDVEALCIGAIESNYQKSRIDKVCREL----------------------- 110 (222)
T ss_pred CCc--------hhHH-----HHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHc-----------------------
Confidence 421 1111 1223444467799999999987654444444444433
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCC
Q 005804 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278 (676)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN 278 (676)
++..+.||......++.++. +.|+..+.-..+
T Consensus 111 ------gl~~~~PLW~~d~~~l~e~i-~~Gf~aiIv~v~ 142 (222)
T TIGR00289 111 ------GLKSIAPLWHADPEKLMYEV-AEKFEVIIVSVS 142 (222)
T ss_pred ------CCEEeccccCCCHHHHHHHH-HcCCeEEEEEEc
Confidence 45678999999998887765 688777654444
No 88
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.02 E-value=3e-06 Score=85.56 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=38.3
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
|||||+|+++|+||.++|+|++||++ ++...+++||+||
T Consensus 135 ~sH~D~v~~lP~g~~vlA~s~~cp~q--a~~~~~~~~gvQF 173 (198)
T COG0518 135 MSHGDTVVELPEGAVVLASSETCPNQ--AFRYGKRAYGVQF 173 (198)
T ss_pred cchhCccccCCCCCEEEecCCCChhh--heecCCcEEEEee
Confidence 89999999999999999999999999 9999999999999
No 89
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=97.99 E-value=9.3e-05 Score=74.08 Aligned_cols=137 Identities=14% Similarity=0.204 Sum_probs=91.9
Q ss_pred ChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc--------
Q 005804 92 GPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD-------- 163 (676)
Q Consensus 92 GvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~-------- 163 (676)
|+||+||++|+.+... ++.+++||+|+ +-.+-.+++.++++++|++++++..+...
T Consensus 2 ~~~s~Vll~L~~~~~~--------------~~~vifvDTg~--~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~ 65 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRP--------------DVKVFFLDTGR--LFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEY 65 (191)
T ss_pred ChHHHHHHHHHHhcCC--------------CCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHc
Confidence 8899999999976531 35689999998 67788889999999999998888643210
Q ss_pred CCCC-CCC-hHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccccc
Q 005804 164 GRPK-QGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDD 241 (676)
Q Consensus 164 ~~~~-~gn-~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~ 241 (676)
+.+. ..+ ....|+..+-.-|.++.++ .+.+++|--.++-.. |.. ++... .
T Consensus 66 G~~~~~~~~~~~cc~~~K~~Pl~~~l~~--~~~~i~G~Rr~Es~~-------R~~-------~~~~~------------~ 117 (191)
T TIGR02055 66 GLNLFYRSVPHECCGIRKVEPLKRALAG--VSAWITGLRRDQSPT-------RAQ-------APFLE------------I 117 (191)
T ss_pred CcccccccchHHHHHHHhHHHHHHHHhc--CCEEEEEeccccCch-------hcC-------Cceee------------e
Confidence 1110 011 3344555555557776654 567888877766332 111 11100 0
Q ss_pred ccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 242 LKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 242 ~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
....++..+.||++.+..||.+|..++|||+
T Consensus 118 ~~~~~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~ 148 (191)
T TIGR02055 118 DEAFGLVKINPLADWTSEDVWEYIADNELPY 148 (191)
T ss_pred cCCCCeEEEEecccCCHHHHHHHHHHcCCCC
Confidence 0112345689999999999999999999998
No 90
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=97.60 E-value=0.00014 Score=84.22 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHH
Q 005804 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~ 142 (676)
.+.+++.+.+.+.... ....+|.|.+|||.||++++.++.+....... ...+...+..++| |+.+ ..|.+.
T Consensus 207 ~~~lr~~L~~aV~~rl-~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~----~~~~~~~l~tfsi--g~~~--~~D~~~ 277 (578)
T PLN02549 207 PLVLREAFEKAVIKRL-MTDVPFGVLLSGGLDSSLVASIAARHLAETKA----ARQWGQQLHSFCV--GLEG--SPDLKA 277 (578)
T ss_pred HHHHHHHHHHHHHHHh-ccCCceeEeecCCccHHHHHHHHHHhhhhccc----ccccCCCceEEec--CCCC--CCHHHH
Confidence 4556666666665543 34568999999999999999988765432100 0001113444444 5532 357888
Q ss_pred HHHHHHhcCCeEEEEECccccCCCCCCChHHHHH------------HHHHHHHHHHHHHcCCCEEeeccccchh
Q 005804 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAAR------------DMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (676)
Q Consensus 143 V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR------------~iRY~~L~~~A~e~g~~~LatGHhaDDq 204 (676)
+++.++.+|.+|+.+.++...... .+++... .+-.-++.+.+++.|+.+|++|..+|+.
T Consensus 278 Ar~vA~~lg~~h~ev~~~~~e~~~---~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDEl 348 (578)
T PLN02549 278 AREVADYLGTVHHEFHFTVQEGID---AIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEI 348 (578)
T ss_pred HHHHHHHhCCCCeEEEEChHHHHH---HHHHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHhh
Confidence 999999999999988765321100 1111111 1122356778888999999999999987
No 91
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.57 E-value=0.00098 Score=75.38 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=96.8
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
+.+++++.|||.|| ||++|+.+.. . .+-++++|+|. .-.+-.+++.++.++||++++++.-+.
T Consensus 115 ~~~iavasSG~eds-vLlhl~~~~~---~-----------~ipV~flDTG~--lFpETy~~~d~v~~~ygl~l~~~~p~~ 177 (463)
T TIGR00424 115 GNDIAIAFSGAEDV-ALIEYAHLTG---R-----------PFRVFSLDTGR--LNPETYRFFDAVEKQYGIRIEYMFPDA 177 (463)
T ss_pred CCCEEEEeccHHHH-HHHHHHHHhC---C-----------CCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEECCCc
Confidence 35799999988776 5777776531 1 35688999997 667788889999999999998764321
Q ss_pred c--------cCCCC--CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccc
Q 005804 162 L--------DGRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (676)
Q Consensus 162 ~--------~~~~~--~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf 231 (676)
. .+... ..+....|+..+-+=|.++.+. ++..++|--.++-.-| |. .++.+. .
T Consensus 178 ~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~--~~awitG~Rr~Qs~~t------Ra-------~~~~ve-~- 240 (463)
T TIGR00424 178 VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG--LKAWITGQRKDQSPGT------RS-------EIPVVQ-V- 240 (463)
T ss_pred chHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHHh--CCcEEeeeccccCccc------cc-------cCCccc-c-
Confidence 0 00000 1134556666666667777764 4678888655442101 11 111110 0
Q ss_pred cccccccccc--ccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 232 SSYAYSCHDD--LKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 232 ~~~~~~~~~~--~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
+...+. ...+++.-+-||++.+.+||..|.++++|||-
T Consensus 241 ----d~~~~~~~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~n 280 (463)
T TIGR00424 241 ----DPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVN 280 (463)
T ss_pred ----cccccccccCCCceEEEeecccCCHHHHHHHHHHcCCCCC
Confidence 000000 00123567899999999999999999999983
No 92
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=97.53 E-value=0.0023 Score=65.98 Aligned_cols=139 Identities=11% Similarity=0.099 Sum_probs=86.7
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEE-E-EECCC-CCC-cHHHHHHHHHHHHhcCCeEEEEEC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI-T-VDHGL-REE-SKEEANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aV-h-VDHGL-R~e-S~~Eae~V~~l~~~LGI~~~iv~~ 159 (676)
|+++-+|||+||+.+++.+.+. + ++.++ + +..+- |-. -.--.+.++..++.+|||++.+..
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~-----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----H-----------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----C-----------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 5788999999999998876542 1 33332 2 22221 100 001235678889999999866432
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccc
Q 005804 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (676)
Q Consensus 160 ~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~ 239 (676)
+ +..++. .+-|.+..++.|++.|++|....+-.-+..-+++..
T Consensus 67 ~--------~~~e~~-----~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~------------------------ 109 (223)
T TIGR00290 67 E--------GTEEDE-----VEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRE------------------------ 109 (223)
T ss_pred C--------CCccHH-----HHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHh------------------------
Confidence 1 111111 123444555669999999998755433333333333
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCC
Q 005804 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNR 279 (676)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~ 279 (676)
-++..+.||...+..++..=.-+.|+..+.-..+.
T Consensus 110 -----lgl~~~~PLW~~~~~~ll~e~i~~G~~aiIv~v~a 144 (223)
T TIGR00290 110 -----LGLKSFAPLWHRDPEKLMEEFVEEKFEARIIAVAA 144 (223)
T ss_pred -----cCCEEeccccCCCHHHHHHHHHHcCCeEEEEEEec
Confidence 34568899999999998877778998887655553
No 93
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.44 E-value=9.6e-05 Score=75.30 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=47.9
Q ss_pred CCCccccc--ccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhhhhccCCCCC
Q 005804 1 MARGSIVS--AQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRLFCKCSHAHA 56 (676)
Q Consensus 1 ms~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~~c~~~~~w~ 56 (676)
+.|+|.|. .+|+++.++|+++.+++. ++..++ ++||+|| +||+ .+|+|.++|+
T Consensus 130 ~~H~~~v~~~~lp~~~~vla~s~~~~vq--a~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~-~~~~~~~~~~ 199 (214)
T PRK07765 130 RYHSLTILPETLPAELEVTARTDSGVIM--AVRHRELPIHGVQFHPESVLTEGGHRMLANWL-TVCGWAPDEA 199 (214)
T ss_pred ecchheEecccCCCceEEEEEcCCCcEE--EEEeCCCCEEEEeeCCCcccCcchHHHHHHHH-HHhccccchh
Confidence 46999995 899999999999999999 998887 7999999 6786 6899999999
No 94
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=97.40 E-value=0.0011 Score=77.06 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH
Q 005804 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (676)
Q Consensus 64 ~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V 143 (676)
+++++.+.+.+... +....+|.+.+|||.||++++.++.+....+.. ....-+..++.+++|. +. . ..|..++
T Consensus 220 ~~lr~~L~~AV~~r-l~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~--~~~~~~~~~l~tfsig--~~-~-~~D~~~A 292 (586)
T PTZ00077 220 EEIREALEAAVRKR-LMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEI--DLSKRGMPKLHSFCIG--LE-G-SPDLKAA 292 (586)
T ss_pred HHHHHHHHHHHHHH-hcCCCceEEEecCCchHHHHHHHHHHhhccccc--ccccccCCCceEEEcC--CC-C-CchHHHH
Confidence 34555555555443 344678999999999999999988765432100 0000001145666654 32 2 3578899
Q ss_pred HHHHHhcCCeEEEEECccccCCC--------C-CCC-hHHHHHHHHHHHHHHHHHHcCCCEEeeccccchh
Q 005804 144 SHRVSDMGIRCEIVRCDWLDGRP--------K-QGH-LQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~~~~~~--------~-~gn-~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDq 204 (676)
++.++.+|.+|+.+.++...... . ..+ +...+- +-.-++.+.+++.|+..+++|.-+|..
T Consensus 293 r~vA~~lg~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~~-~p~yll~r~a~~~gvkVvLsGeGaDEl 362 (586)
T PTZ00077 293 RKVAEYLGTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRAS-TPMYLLSRRIKALGIKMVLSGEGSDEL 362 (586)
T ss_pred HHHHHHhCCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcchH-HHHHHHHHHHHhcCCeEEEecCchhhh
Confidence 99999999999888764321100 0 000 000011 112356778888899999999998875
No 95
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.34 E-value=0.0011 Score=77.43 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHHHc---CCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHH
Q 005804 62 DMTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138 (676)
Q Consensus 62 ~~~~~~~~~~~~i~~~---~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~ 138 (676)
..+++.+.+++.+.++ .+..+.+|.+.+|||.||++++.++.+.... .+.++++.+.- ...+
T Consensus 235 ~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~~~-------------~i~t~s~~~~~--~~~d 299 (628)
T TIGR03108 235 SEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLSDT-------------PVNTCSIAFDD--PAFD 299 (628)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhcCC-------------CCcEEEEecCC--CCCC
Confidence 3455555554444432 2445678999999999999998877642111 35566666542 2346
Q ss_pred HHHHHHHHHHhcCCeEEEEECccccCC-----------CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchh
Q 005804 139 EANIVSHRVSDMGIRCEIVRCDWLDGR-----------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (676)
Q Consensus 139 Eae~V~~l~~~LGI~~~iv~~~~~~~~-----------~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDq 204 (676)
|...++++|+.+|++++++.++..... |. ++.. -...| ++.+.+++ +++++++|.-+|..
T Consensus 300 E~~~A~~vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~P~-~~~~---~~~~~-~~~~~a~~-~~kV~LsG~GgDEl 370 (628)
T TIGR03108 300 ESAYARQVAERYGTNHRVETVDPDDFSLVDRLAGLYDEPF-ADSS---ALPTY-RVCELARK-RVTVALSGDGGDEL 370 (628)
T ss_pred hHHHHHHHHHHhCCCCeEEecCHHHHHHHHHHHHHhCCCC-CCch---HHHHH-HHHHHHHC-CCCEEEeccchhhc
Confidence 888999999999999998876532210 00 0000 11122 34455555 69999999988864
No 96
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.33 E-value=0.0016 Score=75.82 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC-CcHHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEANIVS 144 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~-eS~~Eae~V~ 144 (676)
+.+.+.+.+... +....+|.+.+|||.||++++.++.+.... .+.+++|.+.--+ ...+|..+++
T Consensus 245 l~~~L~~AV~~r-l~sd~pvg~~LSGGlDSs~Iaa~~~~~~~~-------------~l~tftigf~~~~~~~~dE~~~A~ 310 (589)
T TIGR03104 245 ILEALRLAVKRR-LVADVPVGVLLSGGLDSSLIVGLLAEAGVD-------------GLRTFSIGFEDVGGEKGDEFEYSD 310 (589)
T ss_pred HHHHHHHHHHHH-hhcCCceeEEecCCccHHHHHHHHHHhcCC-------------CceEEEEEecCCCCCCCChHHHHH
Confidence 333444444433 345688999999999999999887643111 3567777653111 1246889999
Q ss_pred HHHHhcCCeEEEEECccccC------------CCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchh
Q 005804 145 HRVSDMGIRCEIVRCDWLDG------------RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (676)
Q Consensus 145 ~l~~~LGI~~~iv~~~~~~~------------~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDq 204 (676)
+.|+.+|.+++.+.++.... .|. .+... +-..++.+.+++ +++++++|+-+|..
T Consensus 311 ~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~-~~~~~----~~~~~l~~~a~~-~~kV~LsGeGaDEl 376 (589)
T TIGR03104 311 IIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPM-VSHDC----VAFYLLSEEVSK-HVKVVQSGQGADEV 376 (589)
T ss_pred HHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCC-CCchH----HHHHHHHHHHhC-CCeEEeecCchHhc
Confidence 99999999998887643211 010 11111 112246666666 59999999998865
No 97
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.30 E-value=0.003 Score=73.12 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH
Q 005804 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (676)
Q Consensus 64 ~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V 143 (676)
+.+++.+.+.++.. +..+.+|.+.+|||.||++++.++.+..............|...+..++|... . ..|..++
T Consensus 210 ~~lr~~L~~aV~~r-l~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~---~-~~D~~~A 284 (554)
T PRK09431 210 NELRDALEAAVKKR-LMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE---G-SPDLKAA 284 (554)
T ss_pred HHHHHHHHHHHHHH-hcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC---C-CChHHHH
Confidence 34445555555443 34567899999999999999998876533210000000011114566666543 2 3488899
Q ss_pred HHHHHhcCCeEEEEECccccCCC-C--------CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchh
Q 005804 144 SHRVSDMGIRCEIVRCDWLDGRP-K--------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~~~~~~-~--------~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDq 204 (676)
++.++.+|.+|+.+.++...... . ..++-...-.+-.-++.+.++..|+..+++|.-+|.+
T Consensus 285 ~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDEl 354 (554)
T PRK09431 285 REVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADEL 354 (554)
T ss_pred HHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHcCCEEEEecCchhhh
Confidence 99999999999988875322100 0 0000000011112345666667789999999988865
No 98
>PLN02309 5'-adenylylsulfate reductase
Probab=97.26 E-value=0.0038 Score=70.66 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=95.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
+++++++.|||.|| ||++|+.+.. . .+-++++|+|. .-.+-.+++.++.++||++++++.-+.
T Consensus 110 ~~~ia~~~SG~ed~-vll~l~~~~~---~-----------~ipV~flDTG~--lfpETy~~~d~v~~~ygl~i~~~~P~~ 172 (457)
T PLN02309 110 GNDIAIAFSGAEDV-ALIEYAHLTG---R-----------PFRVFSLDTGR--LNPETYRLFDAVEKHYGIRIEYMFPDA 172 (457)
T ss_pred CCCEEEEecchHHH-HHHHHHHHhC---C-----------CCcEEEecCCC--CCHHHHHHHHHHHHHhCCceEEECCCc
Confidence 36799999977776 5667765421 1 34578999998 667788889999999999998773221
Q ss_pred cc--------CCCC--CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccc
Q 005804 162 LD--------GRPK--QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (676)
Q Consensus 162 ~~--------~~~~--~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf 231 (676)
.. +... ..+....|+..+-+=|.++.+. .+..++|--.++-..| |.. ++.+. .
T Consensus 173 ~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~--~~awitG~Rr~Qs~~~------Ra~-------l~~ve-~- 235 (457)
T PLN02309 173 VEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGT------RAE-------VPVVQ-V- 235 (457)
T ss_pred chHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHhh--CCEEEEeeccccCccc------ccc-------CCeee-e-
Confidence 10 0000 1134455666666667777765 4688998665542201 111 11110 0
Q ss_pred cccccccccc--ccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 232 SSYAYSCHDD--LKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 232 ~~~~~~~~~~--~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
+...+. ...+++.-+-||++.+..||.+|.+++++||
T Consensus 236 ----d~~~~~~~~~~~~~lKvnPl~~Wt~~dVw~Yi~~~~lP~ 274 (457)
T PLN02309 236 ----DPVFEGLDGGPGSLVKWNPLANVTGNEVWNFLRTMDVPV 274 (457)
T ss_pred ----cccccccccCCCCeeEEcccccCCHHHHHHHHHHcCCCC
Confidence 000000 0012356789999999999999999999998
No 99
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0012 Score=70.14 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=96.0
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCe-EEEEECc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCD 160 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~-~~iv~~~ 160 (676)
.++|++|.|||.|.++.+..|.+ .|+ +++|..-|-|. .+|.+.+++-+.+.|-+ +.+.++.
T Consensus 5 ~~~vVLAySGgLDTscil~WLke---qGy-----------eViay~AnvGQ----~edfe~ar~kAlk~Gakk~~~ed~~ 66 (412)
T KOG1706|consen 5 KKSVVLAYSGGLDTSCILAWLKE---QGY-----------EVIAYLANVGQ----KEDFEEARKKALKSGAKKVVVEDVR 66 (412)
T ss_pred CceEEEEecCCcCchhhhHHHHh---cCc-----------eEEEeeccccc----hhhHHHHHHhhhhcCceEEEehhhh
Confidence 47899999999999998887754 443 79999999996 56677778878788854 5566655
Q ss_pred cccCC----CC-CCC--hH-------HHHHHHHHHHHHHHHHHcCCCEEeecccc--chhHHHHHHHhhcCCCCCCcccc
Q 005804 161 WLDGR----PK-QGH--LQ-------EAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGM 224 (676)
Q Consensus 161 ~~~~~----~~-~gn--~E-------~~AR~iRY~~L~~~A~e~g~~~LatGHha--DDqaET~LmrL~RGsG~~GLaGm 224 (676)
..|.. |. +.+ .| ..||-.--+..-++|++.|+.++.-|.+. +||+-.- |+
T Consensus 67 ~eFvedfi~Pa~qs~a~YEd~YLLGTSlaRp~ia~~qv~va~~eg~~aVsHGcTGKGNDQvrFE------------Lt-- 132 (412)
T KOG1706|consen 67 EEFVEDFIWPALQSSALYEDRYLLGTSLARPVIAKAQVDVAQREGAKAVSHGCTGKGNDQVRFE------------LT-- 132 (412)
T ss_pred HHHHhhcchhhhhhcchhhceeeeccccccchhhhhhhhHHhhcCceeeecccccCCCcceeee------------ee--
Confidence 43321 10 000 11 12343333345578888898888777652 4554211 00
Q ss_pred cccccccccccccccccccCCCeEEEeeCCC-------CCHHHHHHHHHhCCCceeeCCCC
Q 005804 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLD-------FSKDDMYKICQGGNRDWVEDPTN 278 (676)
Q Consensus 225 ~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~-------lsK~EIr~y~~~~gLp~veDpSN 278 (676)
+| .-...+++|-|... --|.++.+|++++|||.-.-|-|
T Consensus 133 -----~y----------sl~P~~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~k~ 178 (412)
T KOG1706|consen 133 -----FY----------SLKPDVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPKN 178 (412)
T ss_pred -----ee----------ccCCcceeeccccchHHHHhhcCchHHHHHHHhcCCCccccCCC
Confidence 01 11234677888765 24689999999999997554444
No 100
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=97.22 E-value=0.00087 Score=61.05 Aligned_cols=58 Identities=24% Similarity=0.153 Sum_probs=51.7
Q ss_pred EEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhhhhcc--CCCHHHHHHH
Q 005804 249 LVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS--SCSFKSELQA 306 (676)
Q Consensus 249 IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~~l~--~~~f~~~L~~ 306 (676)
-||||..+++.||..|+..+|+|++.+++.++....|..+|..|..+. .|++..++.+
T Consensus 3 rIRPL~~v~E~ei~~ya~~~~lp~~~~~CP~~~~a~R~~~k~~L~~LE~~~P~~k~~i~~ 62 (104)
T TIGR00269 3 RIKPLRYIPEKEVVLYAFLNELKVHLDECPYSSLSVRARIRDFLYDLENKKPGVKFSVLR 62 (104)
T ss_pred cccccccCCHHHHHHHHHHcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHCcChHHHHHH
Confidence 489999999999999999999999999999999999999999999887 5676665543
No 101
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=97.17 E-value=0.0026 Score=65.34 Aligned_cols=137 Identities=9% Similarity=0.090 Sum_probs=72.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEE--EEEECCCCCCcHH--HHHHHHHHHHhcCCeEEEEEC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLA--ITVDHGLREESKE--EANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~a--VhVDHGLR~eS~~--Eae~V~~l~~~LGI~~~iv~~ 159 (676)
|+++-+|||+||+.+++.+.+. . ++.+ -+++.+.+..... -.+.+...++.+|||+.....
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~----~-----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ----H-----------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPT 66 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT----------------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHHh----C-----------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEc
Confidence 6889999999999998776432 2 3333 2455544311111 134577788999999988775
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc-chhHHHHHHHhhcCCCCCCcccccccccccccccccc
Q 005804 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA-DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (676)
Q Consensus 160 ~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha-DDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~ 238 (676)
+-. ..+-. +-|.+..++.+++.+++|... +||-. ..-+++..
T Consensus 67 ~g~-----~~~~~--------~~l~~~l~~~~v~~vv~GdI~~~~~r~-~~e~vc~~----------------------- 109 (218)
T PF01902_consen 67 SGD-----EEDYV--------EDLKEALKELKVEAVVFGDIDSEYQRN-WVERVCER----------------------- 109 (218)
T ss_dssp --------CCCHH--------HHHHHHHCTC--SEEE--TTS-HHHHH-HHHHHHHH-----------------------
T ss_pred cCc-----cchhh--------HHHHHHHHHcCCCEEEECcCCcHHHHH-HHHHHHHH-----------------------
Confidence 410 11111 223445567779999999886 44433 32333332
Q ss_pred cccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCC
Q 005804 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278 (676)
Q Consensus 239 ~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN 278 (676)
-++..+.||...+..++..-.-+.|+..+.-..+
T Consensus 110 ------lGl~~~~PLW~~d~~~ll~e~i~~Gf~aiIv~V~ 143 (218)
T PF01902_consen 110 ------LGLEAVFPLWGRDREELLREFIESGFEAIIVKVD 143 (218)
T ss_dssp ------CT-EEE-TTTT--HHHHHHHHHHTT-EEEEEEEE
T ss_pred ------cCCEEEecccCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 3457899999999988876666778877554433
No 102
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.16 E-value=0.0085 Score=71.26 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=49.0
Q ss_pred CCCeEEEEEcCChhHHHHHHHH-------HhhhhCCCCCC--------C--------CCCCCCCc-EEEEEEECCCCCCc
Q 005804 81 PHHRIALGVSGGPDSMALCVLT-------AGWKTGGFNQN--------G--------EAGEFIDG-LLAITVDHGLREES 136 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL-------~~~~~~g~~~~--------~--------~~~g~~~~-L~aVhVDHGLR~eS 136 (676)
..++++|++|||.||++.+.+. .+..+.+...+ + ...++..+ +++++ -+-+..|
T Consensus 347 g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--mp~~~ss 424 (700)
T PLN02339 347 GASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVY--MGSENSS 424 (700)
T ss_pred CCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEE--CCCCCCC
Confidence 3478999999999999876664 33332221000 0 00000001 34443 3334467
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECc
Q 005804 137 KEEANIVSHRVSDMGIRCEIVRCD 160 (676)
Q Consensus 137 ~~Eae~V~~l~~~LGI~~~iv~~~ 160 (676)
.+..+.++++|+.+|+.++.++++
T Consensus 425 ~~t~~~A~~la~~lG~~~~~i~I~ 448 (700)
T PLN02339 425 EETRSRAKQLADEIGSSHLDVKID 448 (700)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCH
Confidence 778888999999999999999887
No 103
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0048 Score=71.32 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEE-EEEEECCCCCCcHHHHH
Q 005804 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLL-AITVDHGLREESKEEAN 141 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~-aVhVDHGLR~eS~~Eae 141 (676)
.+.+.+.+...+...+ .....|.+.+|||+||++++.++++..... .. -++|+..- ....|.+
T Consensus 212 ~~~l~~~l~~sV~~r~-~advpvg~~lSGGlDSS~Iaa~a~~~~~~~-------------~~~~fsvg~~~--~~~~D~~ 275 (542)
T COG0367 212 AEHLRSLLEDAVKRRL-VADVPVGVFLSGGLDSSLIAAIAAEELGKE-------------GKTTFTVGFED--SDSPDAK 275 (542)
T ss_pred HHHHHHHHHHHHHHHh-ccCCcEEEEeCCCccHHHHHHHHHHhcccc-------------ceeeeEeecCC--CCCchHH
Confidence 4455555555555433 345789999999999999999987654321 12 24565542 2245889
Q ss_pred HHHHHHHhcCCeEEEEECccccCCCC-------CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhH
Q 005804 142 IVSHRVSDMGIRCEIVRCDWLDGRPK-------QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (676)
Q Consensus 142 ~V~~l~~~LGI~~~iv~~~~~~~~~~-------~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa 205 (676)
++++.++.+|.+++...+........ ...+-...-.+-.-++.+.+++.|..+++.|.-+|.+.
T Consensus 276 ~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~~~p~~~~~~~ply~~~~~a~~~g~kVvLSGeGADElF 346 (542)
T COG0367 276 YARAVAKFLGTPHHEIILTNEELLNALPEVVKALDTPGGMAASIPLYLLSRKARAEGEKVVLSGEGADELF 346 (542)
T ss_pred HHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhhhhcCcEEeecCccHHHHh
Confidence 99999999999988877653221000 00000011122234577888899999999999888653
No 104
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.93 E-value=0.0037 Score=72.03 Aligned_cols=53 Identities=8% Similarity=-0.085 Sum_probs=44.4
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhh-hhccCCCCC
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRL-FCKCSHAHA 56 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~-~c~~~~~w~ 56 (676)
|.|+|.|..+|+++.++|+++.++. ++.+.+ ++||+|| +||+.. +|+|+++|+
T Consensus 131 ~~Hs~~v~~lP~~l~vlA~sd~~v~---ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~~~~~~~ 199 (531)
T PRK09522 131 RYHSLVGSNIPAGLTINAHFNGMVM---AVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNT 199 (531)
T ss_pred EehheecccCCCCcEEEEecCCCEE---EEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhcCCCCCC
Confidence 5799999999999999998766654 466665 9999999 899844 488999998
No 105
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=96.39 E-value=0.0064 Score=65.72 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=91.0
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHh-cCC-eE-EEE
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD-MGI-RC-EIV 157 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~-LGI-~~-~iv 157 (676)
.-.+|.|+||||+||.++++|+.+..++... .++.++|+|.-- .-..-.++|++.... .++ +. .-+
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~---------~~i~VlfiD~E~--QYs~TidyV~em~~~~~dv~~~~yWv 94 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGR---------DKISVLFIDWEA--QYSCTIDYVQEMRESYHDVIETFYWV 94 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCC---------CceEEEEEcchh--hhhhHHHHHHHHHhcccCccccceEE
Confidence 3489999999999999999999998876421 157888999732 122345677776553 343 21 111
Q ss_pred ECc----------------cccCCCC---CCChHHHH------------HHHHHHH---HHHH-HHHcCCCEEeeccccc
Q 005804 158 RCD----------------WLDGRPK---QGHLQEAA------------RDMRYRL---FQKV-CIQHQIGVLLIAHHAD 202 (676)
Q Consensus 158 ~~~----------------~~~~~~~---~gn~E~~A------------R~iRY~~---L~~~-A~e~g~~~LatGHhaD 202 (676)
-++ |....+. ..-++..+ +..-++| |..+ +++.++..+++|--+|
T Consensus 95 cLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~LvGiRad 174 (407)
T COG3969 95 CLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLVGIRAD 174 (407)
T ss_pred EeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhccCCceEEEEeecch
Confidence 111 1111000 00122211 1111222 2332 3344568899998888
Q ss_pred hhHHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 203 DqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
.-.-.+. -+.+..-.. -.+- ..+.+....++.+.-+-|+.+..-++|..+-.+.+.+|
T Consensus 175 ESlNRf~-ai~~~~k~~----~~~~-------~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~y 232 (407)
T COG3969 175 ESLNRFN-AIARKEKLR----FADD-------KPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAY 232 (407)
T ss_pred hhHHHHH-HHHHhhhcc----cCCC-------CCceeeecCCCceEEEEecccchHHHHHHHHHhcCCcc
Confidence 7554442 111111100 0000 00111122345577789999999999988887777665
No 106
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=96.36 E-value=0.1 Score=53.88 Aligned_cols=134 Identities=13% Similarity=0.151 Sum_probs=82.4
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCc----HHHHHHHHHHHHhcCCeEEEEEC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES----KEEANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS----~~Eae~V~~l~~~LGI~~~iv~~ 159 (676)
|+++-+|||+||.-+++.+. +.|. +|.++..=+--+++| .--.+.+...++.+|||+.....
T Consensus 2 k~~aL~SGGKDS~~Al~~a~---~~G~-----------eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~ 67 (223)
T COG2102 2 KVIALYSGGKDSFYALYLAL---EEGH-----------EVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDT 67 (223)
T ss_pred cEEEEEecCcHHHHHHHHHH---HcCC-----------eeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEec
Confidence 57889999999988887664 3433 344433222111211 12345677788999999877664
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc-hhHHHHHHHhhcCCCCCCcccccccccccccccccc
Q 005804 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD-DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (676)
Q Consensus 160 ~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD-DqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~ 238 (676)
+... ....| -+.+..+..+++.|..|--+. +|.+. +-|+++-
T Consensus 68 ~g~~----e~eve---------~L~~~l~~l~~d~iv~GaI~s~yqk~r-ve~lc~~----------------------- 110 (223)
T COG2102 68 SGEE----EREVE---------ELKEALRRLKVDGIVAGAIASEYQKER-VERLCEE----------------------- 110 (223)
T ss_pred Cccc----hhhHH---------HHHHHHHhCcccEEEEchhhhHHHHHH-HHHHHHH-----------------------
Confidence 4211 00122 234445566689999998875 45443 3344443
Q ss_pred cccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceee
Q 005804 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE 274 (676)
Q Consensus 239 ~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ve 274 (676)
-++..+.||....-.++..-.-..|+.+..
T Consensus 111 ------lGl~~~~PLWg~d~~ell~e~~~~Gf~~~I 140 (223)
T COG2102 111 ------LGLKVYAPLWGRDPEELLEEMVEAGFEAII 140 (223)
T ss_pred ------hCCEEeecccCCCHHHHHHHHHHcCCeEEE
Confidence 345688999999888887777777876643
No 107
>PRK05665 amidotransferase; Provisional
Probab=95.98 E-value=0.0042 Score=64.64 Aligned_cols=50 Identities=10% Similarity=-0.018 Sum_probs=42.0
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCCCeeEeec-----chhhhhhhccC
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY-----LPSIRLFCKCS 52 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-----~~f~~~~c~~~ 52 (676)
++|+|.|..+|+++.++|+|+.|++. ++...+++||+|| ..+++.++.-.
T Consensus 146 ~~H~D~V~~LP~ga~~La~s~~~~~q--~~~~~~~~~g~QfHPE~~~~~~~~~l~~~ 200 (240)
T PRK05665 146 ISHQDQVTALPEGATVIASSDFCPFA--AYHIGDQVLCFQGHPEFVHDYSRALLDLR 200 (240)
T ss_pred EEcCCeeeeCCCCcEEEEeCCCCcEE--EEEeCCCEEEEecCCcCcHHHHHHHHHHh
Confidence 47999999999999999999999999 9888789999999 33445555443
No 108
>PRK07567 glutamine amidotransferase; Provisional
Probab=95.26 E-value=0.013 Score=61.03 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=43.4
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCCCeeEeec-----chhhhhhhccCCC
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY-----LPSIRLFCKCSHA 54 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-----~~f~~~~c~~~~~ 54 (676)
++|+|.|..+|+++.++|+|+.+++. ++...+++||+|| ..++..++....+
T Consensus 150 ~~H~d~V~~lp~~~~vlA~s~~~~vq--a~~~~~~~~gvQfHPE~~~~~~~~~~~~~~~ 206 (242)
T PRK07567 150 VGHKEAVSALPPGAVLLATSPTCPVQ--MFRVGENVYATQFHPELDADGLKTRIDFYRD 206 (242)
T ss_pred eehhhhhhhCCCCCEEEEeCCCCCEE--EEEeCCCEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 46999999999999999999999998 8888779999999 5556666654433
No 109
>PRK05637 anthranilate synthase component II; Provisional
Probab=94.98 E-value=0.014 Score=59.34 Aligned_cols=40 Identities=5% Similarity=-0.128 Sum_probs=32.2
Q ss_pred CCCcccccccCCcceEeeeccC--ccccccccccCC-CeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLV--ARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~q~ 41 (676)
|+|+|.|.++|+++.++|+|++ ++++ -++.+.+ ++||+||
T Consensus 142 ~~H~~~v~~lp~~~~vlA~s~~~~~~v~-~a~~~~~~~~~GvQf 184 (208)
T PRK05637 142 RYHSLGCVVAPDGMESLGTCSSEIGPVI-MAAETTDGKAIGLQF 184 (208)
T ss_pred EechhhhhcCCCCeEEEEEecCCCCCEE-EEEEECCCCEEEEEe
Confidence 6899999999999999999865 5554 1345555 9999999
No 110
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=94.81 E-value=0.43 Score=43.10 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=67.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC----CcHHHHHHHHHHHHhcCCeEEEEEC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE----ESKEEANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~----eS~~Eae~V~~l~~~LGI~~~iv~~ 159 (676)
+|+|+++|+..|.-++.......... ...++.+||..+... ...+..+.+.+.+++.+++..++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~----------~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 69 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL----------KAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLP- 69 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh----------CCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEe-
Confidence 58999999999988887766554431 127899999876431 122334455667777888654332
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCC
Q 005804 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSG 217 (676)
Q Consensus 160 ~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG 217 (676)
.+++ .+.+.+++++++++.|++|+|..-- +-++..|+-
T Consensus 70 --------~~~~--------~~~I~~~~~~~~~dllviG~~~~~~----~~~~~~Gs~ 107 (124)
T cd01987 70 --------GDDV--------AEAIVEFAREHNVTQIVVGKSRRSR----WRELFRGSL 107 (124)
T ss_pred --------CCcH--------HHHHHHHHHHcCCCEEEeCCCCCch----HHHHhcccH
Confidence 1122 2456778999999999999997543 334445653
No 111
>PRK09065 glutamine amidotransferase; Provisional
Probab=94.81 E-value=0.022 Score=59.07 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=41.0
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCCCeeEeec-----chhhhhhhcc
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY-----LPSIRLFCKC 51 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-----~~f~~~~c~~ 51 (676)
+.|+|.|.++|+++.++|+|+.+++. ++..++++||+|| ..++..|+..
T Consensus 146 ~~H~d~v~~lp~~~~~la~s~~~~iq--a~~~~~~i~gvQfHPE~~~~~~~~~~~~ 199 (237)
T PRK09065 146 LTHLQSVLRLPPGAVVLARSAQDPHQ--AFRYGPHAWGVQFHPEFTAHIMRAYLRA 199 (237)
T ss_pred eehhhhhhhCCCCCEEEEcCCCCCee--EEEeCCCEEEEEeCCcCCHHHHHHHHHh
Confidence 46999999999999999999999998 8888779999999 3444555443
No 112
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=94.51 E-value=0.024 Score=57.11 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=35.4
Q ss_pred CCCccccc--ccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVS--AQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
+.|+|.|. .+|+++.++|+|+.++++ ++.+.+ ++||+||
T Consensus 126 ~~H~~~v~~~~lp~~~~~~a~s~~~~v~--a~~~~~~~i~gvQF 167 (195)
T PRK07649 126 RYHSLIVKKETLPDCLEVTSWTEEGEIM--AIRHKTLPIEGVQF 167 (195)
T ss_pred EechheEecccCCCCeEEEEEcCCCcEE--EEEECCCCEEEEEE
Confidence 46999984 799999999999999999 998887 7999999
No 113
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=94.27 E-value=0.56 Score=52.56 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=78.5
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHH
Q 005804 60 LTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139 (676)
Q Consensus 60 ~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~E 139 (676)
|.....+++.+.+.+.+.. =...++.|-+|||.||+..+..+.+-.++.. .+.|. +++.+-| |+ +..-|
T Consensus 204 p~d~~~~r~~~~~aV~KRL-M~d~p~GvLLSGGLDSSLvAsia~R~lk~~~----~~~~~--~lhsFaI--Gl--e~SPD 272 (543)
T KOG0571|consen 204 PLDYLALRHTLEKAVRKRL-MTDVPFGVLLSGGLDSSLVASIAARELKKAQ----AARGS--KLHSFAI--GL--EDSPD 272 (543)
T ss_pred cccHHHHHHHHHHHHHHHh-hccCceeEEeeCCchHHHHHHHHHHHHHHhh----hhcCC--CceEEEe--cC--CCChh
Confidence 3444455555655554432 2237899999999999887766544332211 11222 4554444 66 33447
Q ss_pred HHHHHHHHHhcCCeEEEEECccccCCCC----CCChHH------HHHHHHHHHHHHHHHHcCCCEEeeccccchhH
Q 005804 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPK----QGHLQE------AARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (676)
Q Consensus 140 ae~V~~l~~~LGI~~~iv~~~~~~~~~~----~gn~E~------~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa 205 (676)
.+.+++.|.-+|..|+...+....+-.. .-.+|. .|..- .-++.+..+++|+..|+-|--.|...
T Consensus 273 L~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIRastp-myLlsr~Ikk~gvkmvlSGEGsDEif 347 (543)
T KOG0571|consen 273 LLAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIRASTP-MYLLSRKIKKLGVKMVLSGEGSDEIF 347 (543)
T ss_pred HHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEecCCc-hHHHHHHHHhcceEEEEecCCchhhh
Confidence 7788999999999999887654321000 000111 01111 23677888899998898888777643
No 114
>PRK00758 GMP synthase subunit A; Validated
Probab=93.98 E-value=0.035 Score=54.83 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=35.8
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
+.|+|.|.++|+++.++|+++.+++. ++..++ ++||+||
T Consensus 121 ~~H~~~v~~l~~~~~~la~~~~~~v~--a~~~~~~~~~g~Qf 160 (184)
T PRK00758 121 ASHADEVKELPDGFEILARSDICEVE--AMKHKEKPIYGVQF 160 (184)
T ss_pred eehhhhhhhCCCCCEEEEECCCCCEE--EEEECCCCEEEEEc
Confidence 46999999999999999999999998 888876 7999999
No 115
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=93.91 E-value=0.21 Score=56.10 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.0
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTG 108 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~ 108 (676)
.+|.|-+|||+|||++|+|++.....
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~ 276 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPE 276 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCC
Confidence 68999999999999999999876544
No 116
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=93.69 E-value=0.045 Score=54.64 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=36.6
Q ss_pred CCCccccc--ccCCcceEeeeccCccccccccccCC-CeeEeecch
Q 005804 1 MARGSIVS--AQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQYLP 43 (676)
Q Consensus 1 ms~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~ 43 (676)
+.|++.|. .+|+++.++|+|+.+.+. ++.+++ ++||+||-.
T Consensus 126 ~~H~~~v~~~~lp~~~~v~a~~~~~~i~--a~~~~~~~i~GvQfHP 169 (187)
T PRK08007 126 RYHSLVVEPDSLPACFEVTAWSETREIM--GIRHRQWDLEGVQFHP 169 (187)
T ss_pred EcchhEEccCCCCCCeEEEEEeCCCcEE--EEEeCCCCEEEEEeCC
Confidence 46999984 899999999999999998 888887 899999964
No 117
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=93.68 E-value=0.047 Score=54.10 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=36.5
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
+.|+|.|.++|+++.++|+++.+++. ++..++ ++||+||
T Consensus 124 ~~H~~~v~~l~~~~~vla~~~~~~v~--a~~~~~~~~~g~Qf 163 (188)
T TIGR00888 124 MSHGDKVKELPEGFKVLATSDNCPVA--AMAHEEKPIYGVQF 163 (188)
T ss_pred eEccceeecCCCCCEEEEECCCCCeE--EEEECCCCEEEEee
Confidence 46999999999999999999999999 998887 9999999
No 118
>CHL00101 trpG anthranilate synthase component 2
Probab=93.61 E-value=0.049 Score=54.40 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=35.5
Q ss_pred CCCccccc--ccCCcceEeeeccCccccccccccCC-C-eeEeec
Q 005804 1 MARGSIVS--AQSRTTSTLLSTLVARLSLSSVKCRI-P-FTRSQY 41 (676)
Q Consensus 1 ms~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~q~ 41 (676)
+.|+|.|. .+|+++.++|+|+.+++. ++.+++ + +||+||
T Consensus 126 ~~H~~~v~~~~lp~~~~vla~s~~~~v~--a~~~~~~~~i~gvQf 168 (190)
T CHL00101 126 RYHSLIIDPLNLPSPLEITAWTEDGLIM--ACRHKKYKMLRGIQF 168 (190)
T ss_pred cchhheeecccCCCceEEEEEcCCCcEE--EEEeCCCCCEEEEEe
Confidence 57999995 799999999999999999 888887 6 999999
No 119
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=93.50 E-value=0.3 Score=44.66 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceee
Q 005804 205 AELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE 274 (676)
Q Consensus 205 aET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ve 274 (676)
|..+|..++.|.|.. ++...... ......++.++|||+++.+.||..|++-.+++...
T Consensus 2 A~~~Ls~~~kGRG~s----l~~~~~~~--------~~~~~~~i~~~rPLRd~l~kEi~~Y~~~~~l~~~~ 59 (107)
T PF10288_consen 2 AIKTLSNVAKGRGFS----LPWQVSDG--------DSRNGWDIKIIRPLRDLLKKEIAFYNRLCGLESVL 59 (107)
T ss_pred HHHHHHHHHcCCcee----cchHHhCC--------cccCCCCceEEeehHhCCHHHHHHHHHHhCcchhh
Confidence 456677778888742 22211110 01123689999999999999999999999998433
No 120
>PRK10490 sensor protein KdpD; Provisional
Probab=93.09 E-value=1.1 Score=55.17 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=66.7
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC-CCCcHHH---HHHHHHHHHhcCCeE
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-REESKEE---ANIVSHRVSDMGIRC 154 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL-R~eS~~E---ae~V~~l~~~LGI~~ 154 (676)
+.-.++|+|++||++.|-.|.--..+.... +..+++++||+.+- ...+.++ .....++|+++|.+.
T Consensus 247 ~~~~eriLV~v~~~~~~~~lIr~~~rlA~~----------~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~ 316 (895)
T PRK10490 247 WHTRDAILLCIGHNTGSEKLVRTAARLAAR----------LGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAET 316 (895)
T ss_pred CCcCCeEEEEECCCcchHHHHHHHHHHHHh----------cCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEE
Confidence 345689999999999998887655544433 12278999999752 2222222 333345899999997
Q ss_pred EEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 155 EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 155 ~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
+++.- +++. ..+.++|++.|++.|++|+...-
T Consensus 317 ~~~~~---------~dva--------~~i~~~A~~~~vt~IViG~s~~~ 348 (895)
T PRK10490 317 ATLSD---------PAEE--------KAVLRYAREHNLGKIIIGRRASR 348 (895)
T ss_pred EEEeC---------CCHH--------HHHHHHHHHhCCCEEEECCCCCC
Confidence 66642 1221 34678999999999999998643
No 121
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=92.77 E-value=0.079 Score=52.87 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=35.8
Q ss_pred CCCcccc--cccCCcceEeeeccCc-cccccccccCC-CeeEeecch
Q 005804 1 MARGSIV--SAQSRTTSTLLSTLVA-RLSLSSVKCRI-PFTRSQYLP 43 (676)
Q Consensus 1 ms~g~~v--~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~q~~~ 43 (676)
+.|++.| ..+|+++.++|+++.+ .+. ++.+++ ++||+||-.
T Consensus 126 ~~H~~~v~~~~l~~~~~v~a~s~~~~~v~--a~~~~~~~i~gvQfHP 170 (188)
T TIGR00566 126 RYHSLVVEPETLPTCFPVTAWEEENIEIM--AIRHRDLPLEGVQFHP 170 (188)
T ss_pred EcccceEecccCCCceEEEEEcCCCCEEE--EEEeCCCCEEEEEeCC
Confidence 4699988 5899999999999876 888 888888 899999964
No 122
>PRK07053 glutamine amidotransferase; Provisional
Probab=92.62 E-value=0.13 Score=53.29 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=34.1
Q ss_pred CCcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 2 ARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
.|+|++ .+|++..++|+|+.+++. ++.-.+.+||+||
T Consensus 140 ~H~d~~-~lP~ga~~La~s~~~~~q--af~~g~~~~g~Qf 176 (234)
T PRK07053 140 WHGDTF-DLPEGATLLASTPACRHQ--AFAWGNHVLALQF 176 (234)
T ss_pred EeCCEE-ecCCCCEEEEcCCCCCee--EEEeCCCEEEEee
Confidence 599998 799999999999999998 8887779999999
No 123
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=92.61 E-value=0.13 Score=59.63 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=35.5
Q ss_pred CCCccccc--ccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVS--AQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
+.|++.|. .+|++|.++|+++.+++. ++.+++ ++||+||
T Consensus 127 ~~Hs~~v~~~~lp~~~~vlA~s~d~~i~--a~~~~~~pi~GvQF 168 (534)
T PRK14607 127 RYHSLVVEEASLPECLEVTAKSDDGEIM--GIRHKEHPIFGVQF 168 (534)
T ss_pred eccchheecccCCCCeEEEEEcCCCCEE--EEEECCCCEEEEEe
Confidence 46999884 799999999999999999 999988 8999999
No 124
>PRK06490 glutamine amidotransferase; Provisional
Probab=92.54 E-value=0.098 Score=54.42 Aligned_cols=38 Identities=5% Similarity=-0.253 Sum_probs=35.0
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
+.|+|. ..+|+++.++|+|+.+++. ++...+++||+||
T Consensus 140 ~~H~d~-~~lP~~~~~LA~s~~~~~q--a~~~~~~v~g~Qf 177 (239)
T PRK06490 140 HWHREG-FDLPAGAELLATGDDFPNQ--AFRYGDNAWGLQF 177 (239)
T ss_pred EECCcc-ccCCCCCEEEEeCCCCCeE--EEEeCCCEEEEee
Confidence 369999 7899999999999999999 8888779999999
No 125
>PRK05670 anthranilate synthase component II; Provisional
Probab=92.12 E-value=0.11 Score=51.73 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=34.9
Q ss_pred CCCccccc--ccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVS--AQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
+.|+|.|. ++|+++.++|+++.+++. ++..++ ++||+||
T Consensus 126 ~~H~~~v~~~~lp~~~~~la~s~~~~i~--a~~~~~~~~~gvQf 167 (189)
T PRK05670 126 RYHSLVVDRESLPDCLEVTAWTDDGEIM--GVRHKELPIYGVQF 167 (189)
T ss_pred cchhheeccccCCCceEEEEEeCCCcEE--EEEECCCCEEEEee
Confidence 36999995 499999999999999988 998866 8999999
No 126
>PRK08250 glutamine amidotransferase; Provisional
Probab=91.62 E-value=0.13 Score=53.38 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=38.6
Q ss_pred CCcccccccCCcceEeeeccCccccccccccCCCeeEeec-----chhhhhhhc
Q 005804 2 ARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY-----LPSIRLFCK 50 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-----~~f~~~~c~ 50 (676)
.|+|++ .+|+++.+||+|+.|++. ++.-.+++||+|| ..+++.++.
T Consensus 142 ~H~d~~-~lP~~a~~LA~s~~~~~q--a~~~~~~~~g~QfHPE~~~~~~~~~~~ 192 (235)
T PRK08250 142 WHNDMP-GLTDQAKVLATSEGCPRQ--IVQYSNLVYGFQCHMEFTVEAVELLIA 192 (235)
T ss_pred Eeccee-cCCCCCEEEECCCCCCce--EEEeCCCEEEEeecCcCCHHHHHHHHH
Confidence 699975 799999999999999999 8888789999999 444555554
No 127
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=91.51 E-value=0.12 Score=51.57 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=32.3
Q ss_pred CCCccccc--ccCCcceEeeecc--C---ccccccccccCC-CeeEeecc
Q 005804 1 MARGSIVS--AQSRTTSTLLSTL--V---ARLSLSSVKCRI-PFTRSQYL 42 (676)
Q Consensus 1 ms~g~~v~--~~~~~~~~~~~~~--~---~~~~~~~~~~~~-~~~~~q~~ 42 (676)
+.|+|.|. ++|++|.++|+|+ + ..+. ++.+++ ++||+||-
T Consensus 126 ~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~--~~~~~~~pi~gvQfH 173 (193)
T PRK08857 126 RYHSLVVKNDTLPECFELTAWTELEDGSMDEIM--GFQHKTLPIEAVQFH 173 (193)
T ss_pred EccEEEEEcCCCCCCeEEEEEecCcCCCcceEE--EEEeCCCCEEEEeeC
Confidence 47999986 8999999999886 2 2355 777877 99999993
No 128
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=90.97 E-value=3.7 Score=36.84 Aligned_cols=95 Identities=11% Similarity=0.141 Sum_probs=59.2
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC-----------cHHHHHHHHHHHHhcCC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-----------SKEEANIVSHRVSDMGI 152 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e-----------S~~Eae~V~~l~~~LGI 152 (676)
+|+|++.|..+|.-++.....+.... ..+++++||-...... ..+..+.+.+.+++.|+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~----------~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 70 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQ----------NGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGV 70 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcC----------CCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCC
Confidence 58999999999888877665543321 1278899985432211 12233444556666788
Q ss_pred eEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 153 RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 153 ~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
++...... .+++ .+.+.+++++++++.|++|++...
T Consensus 71 ~~~~~~~~-------~~~~--------~~~I~~~a~~~~~dlIV~G~~~~~ 106 (132)
T cd01988 71 PVHTIIRI-------DHDI--------ASGILRTAKERQADLIIMGWHGST 106 (132)
T ss_pred ceEEEEEe-------cCCH--------HHHHHHHHHhcCCCEEEEecCCCC
Confidence 76544321 1111 123566788999999999999654
No 129
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=90.86 E-value=0.12 Score=51.63 Aligned_cols=40 Identities=3% Similarity=-0.109 Sum_probs=36.4
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC--CeeEeecc
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI--PFTRSQYL 42 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~q~~ 42 (676)
+.|+|.|.++|+++.++|+++++++- ++..++ +++|+||-
T Consensus 129 ~~H~~~v~~~~~~~~vla~~~d~~ve--a~~~~~~~~~~gvQfH 170 (189)
T cd01745 129 SLHHQAIKRLADGLRVEARAPDGVIE--AIESPDRPFVLGVQWH 170 (189)
T ss_pred chHHHHHhhcCCCCEEEEECCCCcEE--EEEeCCCCeEEEEecC
Confidence 57999999999999999999899988 888875 89999995
No 130
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=90.76 E-value=4.3 Score=35.46 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=59.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC--------cHHHHHHHHHHH---HhcCC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--------SKEEANIVSHRV---SDMGI 152 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e--------S~~Eae~V~~l~---~~LGI 152 (676)
+|+|+++|+..+-.++.....+.... ..+++++||....-.. ..+..+...++. ...|+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~----------~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 70 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL----------GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGV 70 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 58999999999988887766654431 1278999997654211 112222233333 34577
Q ss_pred eEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchh
Q 005804 153 RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQ 204 (676)
Q Consensus 153 ~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDq 204 (676)
+++..-. .++. .+.+.+++++.+++.|++|.+....
T Consensus 71 ~~~~~~~--------~~~~--------~~~i~~~~~~~~~dlvvig~~~~~~ 106 (130)
T cd00293 71 KVETVVL--------EGDP--------AEAILEAAEELGADLIVMGSRGRSG 106 (130)
T ss_pred ceEEEEe--------cCCC--------HHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 7654432 1222 2456778899999999999986553
No 131
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=90.49 E-value=0.095 Score=51.62 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=32.9
Q ss_pred CCCcccccc---cCCcceEeeeccCc-cccccccccCC-CeeEeecc
Q 005804 1 MARGSIVSA---QSRTTSTLLSTLVA-RLSLSSVKCRI-PFTRSQYL 42 (676)
Q Consensus 1 ms~g~~v~~---~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~q~~ 42 (676)
+.|+|.|.. +|+++.++|+++.. .+. ++.+.+ ++||+||-
T Consensus 128 ~~H~~~v~~~~~~p~~~~~la~s~~~~~~~--~~~~~~~~i~g~QfH 172 (192)
T PF00117_consen 128 QYHSDAVNPDDLLPEGFEVLASSSDGCPIQ--AIRHKDNPIYGVQFH 172 (192)
T ss_dssp EEECEEEEEGHHHHTTEEEEEEETTTTEEE--EEEECTTSEEEESSB
T ss_pred cccceeeecccccccccccccccccccccc--cccccccEEEEEecC
Confidence 479999999 99999999999764 555 555555 79999993
No 132
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.45 E-value=4.7 Score=48.80 Aligned_cols=110 Identities=17% Similarity=0.187 Sum_probs=74.2
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC-CcHHHH---HHHHHHHHhcCCeEE
Q 005804 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-ESKEEA---NIVSHRVSDMGIRCE 155 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~-eS~~Ea---e~V~~l~~~LGI~~~ 155 (676)
...++|+|++||++.|--+.--..+.... +....++|||+.+-.. .++.+. ....++|+++|-.+.
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~----------~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~ 315 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR----------LHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIV 315 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH----------hCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEE
Confidence 34589999999999999887655544332 1226899999987432 333444 445558999999988
Q ss_pred EEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhH-----HHHHHHhhcCC
Q 005804 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA-----ELFILRLSRNS 216 (676)
Q Consensus 156 iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa-----ET~LmrL~RGs 216 (676)
++.-. ++. +.+.++|+.+++..|++|.+..-.- +.+.-+|.+..
T Consensus 316 ~l~~~---------dv~--------~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~ 364 (890)
T COG2205 316 TLYGG---------DVA--------KAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREA 364 (890)
T ss_pred EEeCC---------cHH--------HHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcC
Confidence 77531 111 2466789999999999999876432 34444555543
No 133
>PLN02335 anthranilate synthase
Probab=89.09 E-value=0.28 Score=50.51 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=34.3
Q ss_pred CCCccccc--ccCCc-ceEeeeccCccccccccccCC-C-eeEeec
Q 005804 1 MARGSIVS--AQSRT-TSTLLSTLVARLSLSSVKCRI-P-FTRSQY 41 (676)
Q Consensus 1 ms~g~~v~--~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~~~~q~ 41 (676)
+.|+|.|. ++|++ |.++|++.++.+. ++.+++ + +||+||
T Consensus 149 ~~H~~~v~~~~lp~~~~~v~a~~~~~~v~--ai~~~~~~~i~GvQf 192 (222)
T PLN02335 149 RYHSLVIEKDTFPSDELEVTAWTEDGLIM--AARHRKYKHIQGVQF 192 (222)
T ss_pred echhheEecccCCCCceEEEEEcCCCCEE--EEEecCCCCEEEEEe
Confidence 57999995 67887 9999999999988 999886 5 999999
No 134
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=88.34 E-value=0.36 Score=48.08 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=32.1
Q ss_pred CCCcccc--cccCCcceEeeeccCcc--ccccccccCC-CeeEeecch
Q 005804 1 MARGSIV--SAQSRTTSTLLSTLVAR--LSLSSVKCRI-PFTRSQYLP 43 (676)
Q Consensus 1 ms~g~~v--~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~q~~~ 43 (676)
+.|++.| .++|+++.++|+|+.+- .+.-++.++. ++||+||-.
T Consensus 126 ~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHP 173 (191)
T PRK06774 126 RYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHP 173 (191)
T ss_pred EeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECC
Confidence 4699988 58899999999988541 1211556766 999999963
No 135
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=87.38 E-value=0.31 Score=51.19 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=34.2
Q ss_pred CcccccccCCcceEeeeccCccccccccccCC-C-eeEeec
Q 005804 3 RGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-P-FTRSQY 41 (676)
Q Consensus 3 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~q~ 41 (676)
|.+.|..+|+++.++|+++.+.+- ++.+++ + ++|+||
T Consensus 183 H~q~V~~l~~gl~v~A~s~dg~ie--Aie~~~~~~~~GVQw 221 (254)
T PRK11366 183 HGQGAKVVSPRLRVEARSPDGLVE--AVSVINHPFALGVQW 221 (254)
T ss_pred HHHHHhhcccceEEEEEcCCCcEE--EEEeCCCCCEEEEEe
Confidence 899999999999999999999998 998877 5 599999
No 136
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=86.95 E-value=0.48 Score=47.23 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=34.7
Q ss_pred CCCccccc--ccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVS--AQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
+.|++.|. ++|+++.++|.+..+.++ ++.+.+ ++||+||
T Consensus 127 ~~Hs~~v~~~~lp~~l~~~a~~~~~~i~--a~~~~~~pi~GvQF 168 (190)
T PRK06895 127 LYHSWAVSEENFPTPLEITAVCDENVVM--AMQHKTLPIYGVQF 168 (190)
T ss_pred cchhheecccccCCCeEEEEECCCCcEE--EEEECCCCEEEEEe
Confidence 36999996 689999999999999888 898888 7999999
No 137
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=86.83 E-value=6.1 Score=36.62 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=55.0
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC--CC-c-------------HHHH----HHH
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR--EE-S-------------KEEA----NIV 143 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR--~e-S-------------~~Ea----e~V 143 (676)
+|+||+.|...|..++....+.... ...+++++||-.... .. . .+++ +.+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~----------~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 70 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT----------KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPY 70 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC----------CCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988776654332 112788888853211 00 0 0111 112
Q ss_pred HHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
.+.|+..|++....... .+++ .+.+.++|++.+++.|++|.|..
T Consensus 71 ~~~~~~~~~~~~~~~~~-------g~~~--------~~~I~~~a~~~~~dlIV~Gs~g~ 114 (146)
T cd01989 71 RCFCSRKGVQCEDVVLE-------DDDV--------AKAIVEYVADHGITKLVMGASSD 114 (146)
T ss_pred HHHHhhcCCeEEEEEEe-------CCcH--------HHHHHHHHHHcCCCEEEEeccCC
Confidence 22344456665544321 1122 22355678999999999998854
No 138
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=84.62 E-value=11 Score=37.84 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=67.3
Q ss_pred EEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcH--HHHHHHHHHHHhcCCeEEEEECcccc-
Q 005804 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK--EEANIVSHRVSDMGIRCEIVRCDWLD- 163 (676)
Q Consensus 87 VAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~--~Eae~V~~l~~~LGI~~~iv~~~~~~- 163 (676)
|=+==|+||++.+..|.. .|+ ++++.+.|..+.|... .=.+.++++|+.+||++...+.+...
T Consensus 3 LH~CCaPCs~~~~~~L~~---~g~-----------~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w 68 (176)
T PF02677_consen 3 LHICCAPCSTYPLERLRE---EGF-----------DVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEW 68 (176)
T ss_pred eeecCccccHHHHHHHHH---CCC-----------CeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHH
Confidence 334458999998876643 333 7899999999986432 23456788999999999876643211
Q ss_pred --------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEee
Q 005804 164 --------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197 (676)
Q Consensus 164 --------~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~Lat 197 (676)
..|..|.-+..|=.+|...-.+.|+++|++...|
T Consensus 69 ~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 69 LRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred HHHHhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 0122234556666888888889999999987665
No 139
>PRK09982 universal stress protein UspD; Provisional
Probab=83.18 E-value=14 Score=34.57 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=27.8
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEEC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDH 130 (676)
++|+||+.|+.+|..++.......+.. +.+++++||-.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~----------~a~l~llhV~~ 41 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHN----------DAHLTLIHIDD 41 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHh----------CCeEEEEEEcc
Confidence 689999999999988877655544331 12788999853
No 140
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=81.83 E-value=16 Score=33.89 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=54.0
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC---C----C-cHH----HH----HHHHHH
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR---E----E-SKE----EA----NIVSHR 146 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR---~----e-S~~----Ea----e~V~~l 146 (676)
++|+||+-|...|..++.....+.... ..+++.+||+.... . . ..+ .. +.+.++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPY----------NAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTEL 73 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhh----------CCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 689999999999988776555443321 12788999953310 0 0 000 01 222334
Q ss_pred HHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc
Q 005804 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (676)
Q Consensus 147 ~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha 201 (676)
++..|++...... + .|++ +..+.++|++.++|.|++|+|.
T Consensus 74 ~~~~~~~~~~~~~-~------~G~p--------~~~I~~~a~~~~~DLIV~Gs~~ 113 (144)
T PRK15118 74 STNAGYPITETLS-G------SGDL--------GQVLVDAIKKYDMDLVVCGHHQ 113 (144)
T ss_pred HHhCCCCceEEEE-E------ecCH--------HHHHHHHHHHhCCCEEEEeCcc
Confidence 4556666422211 1 1222 1234567899999999999995
No 141
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.45 E-value=21 Score=36.43 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=73.6
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHH--HHHHHHHHHhcCCeEEEEEC
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE--ANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~E--ae~V~~l~~~LGI~~~iv~~ 159 (676)
..+|||=.--++||.-.+--+.+. |. +++..+-|..+.|.+.-+ .+.+.++|+++||++.--+.
T Consensus 3 ~~kiLlH~CCAPcs~y~le~l~~~---~~-----------~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY 68 (204)
T COG1636 3 RPKLLLHSCCAPCSGYVLEKLRDS---GI-----------KITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDY 68 (204)
T ss_pred CCeeEEEeecCCCcHHHHHHHHhc---Cc-----------ceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCc
Confidence 368999999999999888766543 22 678889999998765433 34577799999999876554
Q ss_pred c----ccc------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEee
Q 005804 160 D----WLD------GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197 (676)
Q Consensus 160 ~----~~~------~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~Lat 197 (676)
+ |.. ..+..|--+..|=.+|.+.-.+.|.++|.+++.+
T Consensus 69 ~~~~~w~~~vKg~E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ftt 116 (204)
T COG1636 69 EDLEKWFERVKGMEDEPEGGKRCTMCFDMRLEKTAKKAKELGFDVFTT 116 (204)
T ss_pred ccHHHHHHHhhcchhCCCCCchhHhHHHHHHHHHHHHHHHcCCchhhh
Confidence 2 211 1122344567788999999999999999987654
No 142
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=78.23 E-value=1.7 Score=42.85 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCccccc--ccCCcceEeeeccCccccccccccCC-CeeEeecch
Q 005804 2 ARGSIVS--AQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQYLP 43 (676)
Q Consensus 2 s~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~ 43 (676)
.|++.|. ++|+++.++|++.+.-. ..++.+++ ++||+||-.
T Consensus 118 ~H~~~v~~~~lp~~~~v~a~s~~~~~-i~a~~~~~~~i~GvQfHP 161 (178)
T cd01744 118 NHGYAVDPDSLPGGLEVTHVNLNDGT-VEGIRHKDLPVFSVQFHP 161 (178)
T ss_pred CceEEEcccccCCceEEEEEECCCCc-EEEEEECCCCeEEEeeCC
Confidence 6999885 79999999998731100 01788766 899999974
No 143
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=77.11 E-value=1.8 Score=44.01 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=30.6
Q ss_pred Ccccccc--cCCcceEeeeccCc-cccccccccCC-CeeEeec
Q 005804 3 RGSIVSA--QSRTTSTLLSTLVA-RLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 3 ~g~~v~~--~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~q~ 41 (676)
|...|.. +|+.|++.|.|+.. .+- ++.+++ ++||+||
T Consensus 130 HSLvv~~~~lP~~l~vtA~~~d~~~IM--ai~h~~~pi~gvQF 170 (191)
T COG0512 130 HSLVVDPETLPEELEVTAESEDGGVIM--AVRHKKLPIYGVQF 170 (191)
T ss_pred EEEEecCCCCCCceEEEEEeCCCCEEE--EEeeCCCCEEEEec
Confidence 5556666 99999999999664 556 688888 9999999
No 144
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=76.33 E-value=2.1 Score=47.40 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=33.2
Q ss_pred CCccccc--ccCCcceEeeec-cCccccccccccCC-CeeEeec
Q 005804 2 ARGSIVS--AQSRTTSTLLST-LVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 2 s~g~~v~--~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
.||+.|. ++|++++++|.+ .++.+. ++.+++ ++||+||
T Consensus 297 ~H~~~V~~~~lp~~l~v~a~~~~Dg~ie--gi~~~~~pi~gVQf 338 (360)
T PRK12564 297 NHGFAVDEDSLPANLEVTHVNLNDGTVE--GLRHKDLPAFSVQY 338 (360)
T ss_pred CcccEEcccccCCceEEEEEeCCCCcEE--EEEECCCCEEEEEe
Confidence 6999995 899999999987 466677 899887 9999999
No 145
>PRK10116 universal stress protein UspC; Provisional
Probab=76.01 E-value=36 Score=31.26 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=57.8
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC---CCcH---H--------H-HHHHHHHH
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR---EESK---E--------E-ANIVSHRV 147 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR---~eS~---~--------E-ae~V~~l~ 147 (676)
++|+|++-|..+|.-++.....+.+.. ..+++++|+=.... .... + + .+..++++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPV----------NGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLI 73 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHh----------CCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999987776655543321 12678877622110 0000 0 0 12334455
Q ss_pred HhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHH
Q 005804 148 SDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (676)
Q Consensus 148 ~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~ 208 (676)
...|++...... . .|++. ..+.++|++.++|.|++|+|...-.+.+
T Consensus 74 ~~~~~~~~~~~~--~-----~G~~~--------~~I~~~a~~~~~DLiV~g~~~~~~~~~~ 119 (142)
T PRK10116 74 QDADYPIEKTFI--A-----YGELS--------EHILEVCRKHHFDLVICGNHNHSFFSRA 119 (142)
T ss_pred HhcCCCeEEEEE--e-----cCCHH--------HHHHHHHHHhCCCEEEEcCCcchHHHHH
Confidence 566766432222 1 12221 3355789999999999999977554443
No 146
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=73.48 E-value=2 Score=43.72 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=29.3
Q ss_pred CCCcccccccCCcceEeeeccCc-cccccccccCCCeeEeecc
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVA-RLSLSSVKCRIPFTRSQYL 42 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~ 42 (676)
+.|+|.|...| +..++|+|..+ ++. ++....++||+||-
T Consensus 150 ~~Hs~~v~~~~-~~~~la~s~~~~~~~--a~~~~~~i~GvQFH 189 (209)
T PRK13146 150 FVHSYYAQPAN-PADVVAWTDYGGPFT--AAVARDNLFATQFH 189 (209)
T ss_pred EEeEEEEEcCC-CCcEEEEEcCCCEEE--EEEecCCEEEEEcC
Confidence 46999998766 56889988865 455 55555699999993
No 147
>PRK15005 universal stress protein F; Provisional
Probab=72.49 E-value=22 Score=32.66 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCCEEeeccccc
Q 005804 182 LFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 182 ~L~~~A~e~g~~~LatGHhaD 202 (676)
.+.+.+++.++|.|++|+|..
T Consensus 98 ~I~~~a~~~~~DLIV~Gs~~~ 118 (144)
T PRK15005 98 RILELAKKIPADMIIIASHRP 118 (144)
T ss_pred HHHHHHHHcCCCEEEEeCCCC
Confidence 355678999999999998854
No 148
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=72.30 E-value=2.4 Score=42.59 Aligned_cols=38 Identities=5% Similarity=-0.011 Sum_probs=29.9
Q ss_pred CCCcccccccCCcceEeeeccCc-cccccccccCCCeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVA-RLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~ 41 (676)
+.|.+.+ +.|+++.++|+++.+ ++. ++....++||+||
T Consensus 144 ~~Hs~~v-~~~~~~~v~a~~~~~~~~~--a~~~~~~i~GvQf 182 (205)
T PRK13141 144 FVHSYYA-DPCDEEYVAATTDYGVEFP--AAVGKDNVFGAQF 182 (205)
T ss_pred EECeeEe-ccCCcCeEEEEEeCCcEEE--EEEecCCEEEEeC
Confidence 3688888 578889999988765 666 6665569999999
No 149
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=72.27 E-value=2.9 Score=50.31 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=33.3
Q ss_pred CCcccc--cccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 2 ARGSIV--SAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 2 s~g~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
.|++.+ ..+|+++.++|+++.+++. ++.+++ ++||+||
T Consensus 644 ~HS~~~~~~~LP~~~~vlA~s~d~~v~--Ai~~~~~~i~GVQF 684 (717)
T TIGR01815 644 YHSLFARRDRLPAELTVTAESADGLIM--AIEHRRLPLAAVQF 684 (717)
T ss_pred ECCCCcccccCCCCeEEEEEeCCCcEE--EEEECCCCEEEEEe
Confidence 477644 6899999999999999999 999877 8999999
No 150
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=71.97 E-value=29 Score=36.02 Aligned_cols=145 Identities=13% Similarity=0.144 Sum_probs=88.2
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcC-CeEEEEECcccc
Q 005804 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMG-IRCEIVRCDWLD 163 (676)
Q Consensus 85 VlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LG-I~~~iv~~~~~~ 163 (676)
+..|+||--| +|+..++++.- . .+-++++|.|- .-.+-.....+.-+++| |++++...+...
T Consensus 49 ~q~a~~G~~~-lvlid~~~~~~-~-------------~~~l~~idT~~--~~PeT~~l~d~VekkY~~i~I~~~~pd~~e 111 (261)
T KOG0189|consen 49 FQTAASGLEG-LVLIDMLSKTG-R-------------PFRLFFIDTLH--HFPETLRLFDAVEKKYGNIRIHVYFPDAVE 111 (261)
T ss_pred HHHHhccccc-hHHHHHHHHcC-C-------------CceeEEeeccc--cChHHHHHHHHHHHhcCceEEEEEcchhHH
Confidence 5566777655 56666666431 1 24567899874 23444455555667788 998887654321
Q ss_pred C----CCCC------CChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccc
Q 005804 164 G----RPKQ------GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (676)
Q Consensus 164 ~----~~~~------gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~ 233 (676)
. ..+. .+-++.+|..+-+-+.++-+.+++..++||.-.|- | |..+ .+|-+. +
T Consensus 112 ~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ-----------~-gtRs--elpiVq-v--- 173 (261)
T KOG0189|consen 112 VEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQ-----------G-GTRS--ELPIVQ-V--- 173 (261)
T ss_pred HHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccC-----------C-Cccc--ccceEE-e---
Confidence 0 0111 12345555555555677778888899999976542 2 2221 222211 1
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
+ + --++.-+-||.++.-.++..|.+.+++||
T Consensus 174 --D-----~-~fellK~NPlaN~~~~dV~nyi~t~nVP~ 204 (261)
T KOG0189|consen 174 --D-----P-VFELLKINPLANWEFNDVWNYIRTNNVPY 204 (261)
T ss_pred --c-----C-ccceeeecccccccHHHHHHHHHhcCCcH
Confidence 0 0 11255688999999999999999999997
No 151
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=70.39 E-value=49 Score=35.51 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=64.2
Q ss_pred ccHHHHHHHHHH-HHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC
Q 005804 61 TDMTKYREAFSR-RMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (676)
Q Consensus 61 ~~~~~~~~~~~~-~i~~~~-------i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL 132 (676)
...+++.+.|.+ .-...+ .....||+|-+||+- +.|-.++..+. .| .++.++.+|.-||.-
T Consensus 55 ~~~~~l~~~l~~~~~~~~~l~i~l~~~~~~~ki~vl~Sg~g--~nl~~l~~~~~-~g--------~l~~~i~~visn~~~ 123 (280)
T TIGR00655 55 LEESSLLAAFKSALAEKFEMTWELILADKLKRVAILVSKED--HCLGDLLWRWY-SG--------ELDAEIALVISNHED 123 (280)
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEecCCCCcEEEEEEcCCC--hhHHHHHHHHH-cC--------CCCcEEEEEEEcChh
Confidence 447788877776 332211 224478999999993 33344444443 22 123478888888841
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 133 R~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
+..+|+++|||+++.+... .+ |..--..+.++.++.++|+++++-..-
T Consensus 124 ----------~~~~A~~~gIp~~~~~~~~-------~~-----~~~~e~~~~~~l~~~~~Dlivlagym~ 171 (280)
T TIGR00655 124 ----------LRSLVERFGIPFHYIPATK-------DN-----RVEHEKRQLELLKQYQVDLVVLAKYMQ 171 (280)
T ss_pred ----------HHHHHHHhCCCEEEcCCCC-------cc-----hhhhHHHHHHHHHHhCCCEEEEeCchh
Confidence 2336899999998765210 11 111112345666778899999985543
No 152
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=70.10 E-value=59 Score=35.10 Aligned_cols=115 Identities=11% Similarity=0.110 Sum_probs=67.8
Q ss_pred ccHHHHHHHHHHHHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC
Q 005804 61 TDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (676)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~-------i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR 133 (676)
...+++.+.|.+.-...+ -....||+|-+||+. +.|-.++..+. .| .++.++.+|.-||.
T Consensus 65 ~~~~~l~~~l~~l~~~l~l~~~i~~~~~~~kiavl~Sg~g--~nl~al~~~~~-~~--------~l~~~i~~visn~~-- 131 (289)
T PRK13010 65 ASVDTFRQEFQPVAEKFDMQWAIHPDGQRPKVVIMVSKFD--HCLNDLLYRWR-MG--------ELDMDIVGIISNHP-- 131 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEecCCCCeEEEEEEeCCC--ccHHHHHHHHH-CC--------CCCcEEEEEEECCh--
Confidence 447788877766444322 124468999999983 33444444433 22 13347777777774
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHH
Q 005804 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (676)
Q Consensus 134 ~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~ 208 (676)
+ +.++|+++|||+++++... .+.++ --..+.++.+++++|.++++-...=.-+.+
T Consensus 132 -----~---~~~~A~~~gIp~~~~~~~~-------~~~~~-----~~~~~~~~l~~~~~Dlivlagym~il~~~~ 186 (289)
T PRK13010 132 -----D---LQPLAVQHDIPFHHLPVTP-------DTKAQ-----QEAQILDLIETSGAELVVLARYMQVLSDDL 186 (289)
T ss_pred -----h---HHHHHHHcCCCEEEeCCCc-------ccccc-----hHHHHHHHHHHhCCCEEEEehhhhhCCHHH
Confidence 1 3478899999998875321 01111 011345566788899999986544333333
No 153
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=69.44 E-value=77 Score=34.14 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=71.8
Q ss_pred ccHHHHHHHHHHHHH---Hc---C-CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC
Q 005804 61 TDMTKYREAFSRRMA---MA---G-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (676)
Q Consensus 61 ~~~~~~~~~~~~~i~---~~---~-i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR 133 (676)
...+.+.+.|..... .. . -...+||++-|| +-+-+|..||.+|.... ++.++.+|.=||-
T Consensus 62 ~~~~~l~~~f~~~a~~f~m~~~~~~~~~~~ri~i~VS--K~~HCL~DLL~r~~~g~---------L~~eI~~VIsNH~-- 128 (287)
T COG0788 62 LDREALRAAFAPLAEEFGMDWRLHDAAQRKRIAILVS--KEDHCLGDLLYRWRIGE---------LPAEIVAVISNHD-- 128 (287)
T ss_pred ccHHHHHHHHHHHHHhhCceeEEeccccCceEEEEEe--chHHHHHHHHHHHhcCC---------cCCceEEEEcCCH--
Confidence 457777777766322 21 1 234578999988 67899999998886432 2347888877874
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccc
Q 005804 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (676)
Q Consensus 134 ~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHh 200 (676)
..+.+++.+|||++.+.++-. ...|..+|. .+...+.|++.|++|-.
T Consensus 129 --------dl~~~v~~~~IPfhhip~~~~------~k~e~E~~~------~~ll~~~~~DlvVLARY 175 (287)
T COG0788 129 --------DLRPLVERFDIPFHHIPVTKE------NKAEAEARL------LELLEEYGADLVVLARY 175 (287)
T ss_pred --------HHHHHHHHcCCCeeeccCCCC------cchHHHHHH------HHHHHHhCCCEEeehhh
Confidence 246677889999998876421 113444443 45677888999999865
No 154
>PRK13566 anthranilate synthase; Provisional
Probab=69.25 E-value=3.4 Score=49.80 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=33.3
Q ss_pred CCccccc--ccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 2 ARGSIVS--AQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 2 s~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
.|.+.+. .+|+++.++|+++.+++. ++.+.+ ++||+||
T Consensus 654 ~Hs~~v~~~~Lp~~~~vlA~s~dg~V~--ai~~~~~pi~GVQF 694 (720)
T PRK13566 654 YHSLFADPETLPDELLVTAETEDGVIM--AIEHKTLPVAAVQF 694 (720)
T ss_pred ecceeEeeccCCCceEEEEEeCCCcEE--EEEECCCCEEEEec
Confidence 4776654 589999999999999999 999886 9999999
No 155
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=68.28 E-value=67 Score=34.52 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=65.8
Q ss_pred ccccHHHHHHHHHHHHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECC
Q 005804 59 YLTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG 131 (676)
Q Consensus 59 ~~~~~~~~~~~~~~~i~~~~-------i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHG 131 (676)
.+...+++.+.+.+.-...+ ..+..||+|.+||+ .+.|-.|+..+. .| .++.++.+|.-|+.
T Consensus 59 ~~~~~~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~--gsnl~al~~~~~-~~--------~~~~~i~~visn~~ 127 (286)
T PRK06027 59 LIFNLETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKE--DHCLGDLLWRWR-SG--------ELPVEIAAVISNHD 127 (286)
T ss_pred CCCCHHHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCC--CCCHHHHHHHHH-cC--------CCCcEEEEEEEcCh
Confidence 44557888877766544331 23557899999999 344444554432 22 12347777777763
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc
Q 005804 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (676)
Q Consensus 132 LR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha 201 (676)
.+..+|+++|||+++++... .+.++ --..+.++.++.+.|.++++-..
T Consensus 128 ----------~~~~lA~~~gIp~~~~~~~~-------~~~~~-----~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 128 ----------DLRSLVERFGIPFHHVPVTK-------ETKAE-----AEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred ----------hHHHHHHHhCCCEEEeccCc-------cccch-----hHHHHHHHHHHhCCCEEEEecch
Confidence 24456899999998875321 01011 01124556677889999887543
No 156
>PRK15456 universal stress protein UspG; Provisional
Probab=67.85 E-value=74 Score=29.40 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=17.0
Q ss_pred HHHHHHHcCCCEEeeccccc
Q 005804 183 FQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 183 L~~~A~e~g~~~LatGHhaD 202 (676)
+.+++++.++|.|++|+|..
T Consensus 97 I~~~a~~~~~DLIVmG~~g~ 116 (142)
T PRK15456 97 VNELAEELGADVVVIGSRNP 116 (142)
T ss_pred HHHHHhhcCCCEEEEcCCCC
Confidence 45678999999999999864
No 157
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=67.82 E-value=86 Score=33.77 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=65.1
Q ss_pred cccHHHHHHHHHHHHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC
Q 005804 60 LTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (676)
Q Consensus 60 ~~~~~~~~~~~~~~i~~~~-------i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL 132 (676)
....+++.+.|.+.-...+ -.+..||++.+||+ .+.|-.|+..+ +.+. +..++.+|.-||.
T Consensus 60 ~~~~~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~--g~nl~al~~~~-~~~~--------~~~~i~~visn~~- 127 (286)
T PRK13011 60 GLDEDALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKF--DHCLNDLLYRW-RIGE--------LPMDIVGVVSNHP- 127 (286)
T ss_pred CCCHHHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCC--cccHHHHHHHH-HcCC--------CCcEEEEEEECCc-
Confidence 3447788877766544322 23457899999997 33334444433 2321 2347888877873
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 133 R~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
+ +..+|+++|||+++.+.. + .+.++. -..+.++.++.+.|+++++...-
T Consensus 128 --~-------~~~lA~~~gIp~~~~~~~-----~--~~~~~~-----~~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK13011 128 --D-------LEPLAAWHGIPFHHFPIT-----P--DTKPQQ-----EAQVLDVVEESGAELVVLARYMQ 176 (286)
T ss_pred --c-------HHHHHHHhCCCEEEeCCC-----c--Cchhhh-----HHHHHHHHHHhCcCEEEEeChhh
Confidence 1 455689999999876531 1 111110 11245566778899999986543
No 158
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=66.78 E-value=17 Score=31.92 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=29.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL 132 (676)
++|+|+++|+.+|-.++.....+.... ..+++++||-.-.
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~----------~~~i~~l~v~~~~ 42 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRS----------GAEITLLHVIPPP 42 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHH----------TCEEEEEEEEESC
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhh----------CCeEEEEEeeccc
Confidence 689999999999998886665544431 1278999987654
No 159
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=59.70 E-value=1.2e+02 Score=32.02 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=60.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC-C-cHHHH----------HHHHHHHHhcC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-E-SKEEA----------NIVSHRVSDMG 151 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~-e-S~~Ea----------e~V~~l~~~LG 151 (676)
||+--+|||+||.-.+.-+. +.|. +++|+- .++| + +.+|. +.+.-+++-++
T Consensus 2 rvvaLiSGGKDScynmm~cv---~~gH-----------eiVaLa---nl~p~~d~~delDSyMyQtVGh~~i~lyaecm~ 64 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCCV---RLGH-----------EIVALA---NLHPKEDESDELDSYMYQTVGHDVIDLYAECMG 64 (277)
T ss_pred cEEEEEeCChHHHHHHHHHH---HcCC-----------eeeeee---cccCCcccchhHHHHHHHhhhHHHHHHHHHHhc
Confidence 67888999999987665443 3332 454432 2332 2 12222 12233678899
Q ss_pred CeEEEEECcccc------CCCCCC-ChHHHHHHHHHHHHHHHHHHc-CCCEEeeccccchhHHHH
Q 005804 152 IRCEIVRCDWLD------GRPKQG-HLQEAARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELF 208 (676)
Q Consensus 152 I~~~iv~~~~~~------~~~~~g-n~E~~AR~iRY~~L~~~A~e~-g~~~LatGHhaDDqaET~ 208 (676)
+|++.....-.. +.+..+ ..|+ -|.++...-+++ ..+.+..|-.+.|--.+-
T Consensus 65 lPlyrr~i~g~s~nq~l~Y~~t~~DEvED-----Ly~ll~~VK~~~p~~eaVS~GAIlS~YQr~R 124 (277)
T KOG2316|consen 65 LPLYRRRIRGRSINQKLQYTKTEGDEVED-----LYELLKTVKEKIPDVEAVSVGAILSDYQRTR 124 (277)
T ss_pred CceeeeeccCcccccccccccCCCchHHH-----HHHHHHHHHhhCCCceeeehhhhHhHHHHHH
Confidence 999887654211 011111 2333 377788887787 688999999988854333
No 160
>PRK11175 universal stress protein UspE; Provisional
Probab=58.62 E-value=86 Score=32.81 Aligned_cols=100 Identities=8% Similarity=0.038 Sum_probs=53.7
Q ss_pred CCCCeEEEEEcCChhH-------HHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC--------C-CcHH-----
Q 005804 80 KPHHRIALGVSGGPDS-------MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR--------E-ESKE----- 138 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDS-------maLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR--------~-eS~~----- 138 (676)
.+.++|++|+-|+.++ ..++.....+..... ..+++.+||-.... . ...+
T Consensus 150 ~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~---------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 220 (305)
T PRK11175 150 PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLN---------HAEVHLVNAYPVTPINIAIELPEFDPSVYNDAI 220 (305)
T ss_pred CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCc---------CCceEEEEEecCcchhccccccccchhhHHHHH
Confidence 3457899999987653 233333333222110 12688888743210 0 0000
Q ss_pred ---HHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 139 ---EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 139 ---Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
-.+.++++++.+|++.....+ ..|++. ..+.+++++.++|.|++|+|..-
T Consensus 221 ~~~~~~~l~~~~~~~~~~~~~~~v-------~~G~~~--------~~I~~~a~~~~~DLIVmG~~~~~ 273 (305)
T PRK11175 221 RGQHLLAMKALRQKFGIDEEQTHV-------EEGLPE--------EVIPDLAEHLDAELVILGTVGRT 273 (305)
T ss_pred HHHHHHHHHHHHHHhCCChhheee-------ccCCHH--------HHHHHHHHHhCCCEEEECCCccC
Confidence 112345566777876432211 123332 23567899999999999998543
No 161
>PLN02828 formyltetrahydrofolate deformylase
Probab=56.92 E-value=65 Score=34.52 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=41.3
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEEC
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~ 159 (676)
+..||+|-+||+- ..|..|+..+.. | .++.++.+|.-||.-.+. ..+.++|+++|||++++..
T Consensus 69 ~~~riavlvSg~g--~nl~~ll~~~~~-g--------~l~~eI~~ViSn~~~~~~-----a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 69 PKYKIAVLASKQD--HCLIDLLHRWQD-G--------RLPVDITCVISNHERGPN-----THVMRFLERHGIPYHYLPT 131 (268)
T ss_pred CCcEEEEEEcCCC--hhHHHHHHhhhc-C--------CCCceEEEEEeCCCCCCC-----chHHHHHHHcCCCEEEeCC
Confidence 4578999999985 344455555433 2 123478888888842111 2467788999999987753
No 162
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=56.34 E-value=1.3e+02 Score=31.39 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=54.4
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhh-CCCCCCCCCCCCCCcEEEEEEECCC-CC-Cc-HHHHHHHHH-HHHhcCCe
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVDHGL-RE-ES-KEEANIVSH-RVSDMGIR 153 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~-~g~~~~~~~~g~~~~L~aVhVDHGL-R~-eS-~~Eae~V~~-l~~~LGI~ 153 (676)
+..++.+.+|||||..=.-+...|.+... ... .|. +++.+.+|-.+ -+ +. ..-..++++ +...++||
T Consensus 29 ~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i-------~w~-~v~if~~DEr~~Vp~~~~~Sn~~~~~~~l~~~~~ip 100 (253)
T PTZ00285 29 PTSDRPFVLGLPTGSTPLPTYQELIRAYREGRV-------SFS-NVVTFNMDEYVGLPRDHPQSYHYFMKENFFDHVDIK 100 (253)
T ss_pred hhcCCCeEEEEcCCCCHHHHHHHHHHHHhhcCC-------chh-HeEEECCcEEecCCCCchHHHHHHHHHHHhccCCCC
Confidence 44567899999999887766666554322 222 232 78888888754 22 21 122334444 44556655
Q ss_pred EEEE-ECccccCCCCCCChHHHHHHHHHHHHHHHHHH-cCCCEEeecc
Q 005804 154 CEIV-RCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ-HQIGVLLIAH 199 (676)
Q Consensus 154 ~~iv-~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e-~g~~~LatGH 199 (676)
-.-+ .++ ....++++.|+ +|+- ..++ .++|.+++|=
T Consensus 101 ~~~~~~~~-----~~~~~~~~~~~--~y~~---~i~~~~~~Dl~lLG~ 138 (253)
T PTZ00285 101 EENRHILN-----GTAPDLEEECR--RYEE---KIRAVGGIDLFLAGI 138 (253)
T ss_pred HhhEEcCC-----CCCcCHHHHHH--HHHH---HHHHhCCCcEEEeCC
Confidence 3211 111 11124666664 3542 2223 3678777763
No 163
>PRK11175 universal stress protein UspE; Provisional
Probab=54.15 E-value=1.2e+02 Score=31.75 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCEEeeccccchhHHHH
Q 005804 181 RLFQKVCIQHQIGVLLIAHHADDQAELF 208 (676)
Q Consensus 181 ~~L~~~A~e~g~~~LatGHhaDDqaET~ 208 (676)
+.+.+.|++.++|.|++|+|.....+..
T Consensus 97 ~~i~~~a~~~~~DLiV~G~~~~~~~~~~ 124 (305)
T PRK11175 97 EAIIQEVIAGGHDLVVKMTHQHDKLESV 124 (305)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcHHHhh
Confidence 4567788899999999999976544433
No 164
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=52.62 E-value=11 Score=41.73 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=31.2
Q ss_pred CCccccc--ccC-CcceEeeec-cCccccccccccCC-CeeEeec
Q 005804 2 ARGSIVS--AQS-RTTSTLLST-LVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 2 s~g~~v~--~~~-~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
.||+.|. ++| ++|+++|.+ ...-+. ++.+++ ++||+||
T Consensus 292 nH~~aV~~~~l~~~~l~vta~~~nDg~Ve--gi~h~~~pi~gVQf 334 (358)
T TIGR01368 292 NHGYAVDPDSLPAGDLEVTHVNLNDGTVE--GIRHKDLPVFSVQY 334 (358)
T ss_pred CCCcEEcccccCCCceEEEEEECCCCcEE--EEEECCCCEEEEEE
Confidence 4999886 456 789999987 356677 888888 9999999
No 165
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=50.78 E-value=10 Score=38.12 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=27.0
Q ss_pred CCcccccccCCcceEeeeccC-ccccccccccCCCeeEeec
Q 005804 2 ARGSIVSAQSRTTSTLLSTLV-ARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~q~ 41 (676)
.|++.+ ..|++..++|+++. +++. +....+++||+||
T Consensus 141 ~Hs~~~-~~~~~~~~la~~~~~~~~~--~~~~~~~~~gvQf 178 (200)
T PRK13143 141 VHSYYA-YPDDEDYVVATTDYGIEFP--AAVCNDNVFGTQF 178 (200)
T ss_pred Eeeeee-CCCCcceEEEEEcCCCEEE--EEEEcCCEEEEeC
Confidence 588766 46667899999885 4554 4444559999999
No 166
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=49.87 E-value=11 Score=32.11 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=23.1
Q ss_pred cHHHHHHHhccchhhhhhcCceEEccCcceEeec
Q 005804 641 SAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 674 (676)
Q Consensus 641 ~~~~~~~~l~~~p~~~r~~lpvl~~~~~~~~~~p 674 (676)
+.++-+.- .-||..-|..+|||.. +|++++||
T Consensus 22 ~lKk~~~e-~kIP~~~R~~~Pll~~-~~~iv~v~ 53 (74)
T PF11734_consen 22 KLKKLFQE-AKIPPWQRDRLPLLCD-GGEIVWVP 53 (74)
T ss_dssp EHHHHHHH-CT--HHHCCCSEEEEE-TTEEEEET
T ss_pred hHHHHHHH-cCCCHHHHCcEEEEEE-CCEEEEEe
Confidence 34444443 4699999999999999 77999987
No 167
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=49.10 E-value=16 Score=45.40 Aligned_cols=20 Identities=5% Similarity=0.057 Sum_probs=16.0
Q ss_pred Ccccc--cccCCcceEeeeccC
Q 005804 3 RGSIV--SAQSRTTSTLLSTLV 22 (676)
Q Consensus 3 ~g~~v--~~~~~~~~~~~~~~~ 22 (676)
|+..| ..+|+++.++|.|+.
T Consensus 222 HSL~v~~~~lP~~L~~~A~t~~ 243 (918)
T PLN02889 222 HSLVIDAESLPKELVPIAWTSS 243 (918)
T ss_pred CCcccccCCCCCceEEEEEECC
Confidence 77777 468999999998764
No 168
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=47.41 E-value=8.7 Score=39.61 Aligned_cols=37 Identities=11% Similarity=-0.098 Sum_probs=30.9
Q ss_pred CcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 3 RGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 3 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
|-|.|..+|++++++|+|+.|-+- -+.-++.+.+.|=
T Consensus 154 HqDevle~PE~a~llasSe~ceve--~fs~~~~~l~fQG 190 (245)
T KOG3179|consen 154 HQDEVLELPEGAELLASSEKCEVE--MFSIEDHLLCFQG 190 (245)
T ss_pred cccceecCCchhhhhccccccceE--EEEecceEEEecC
Confidence 899999999999999999999988 5555556666664
No 169
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=46.59 E-value=87 Score=32.24 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=62.3
Q ss_pred ccccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCC---hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC
Q 005804 59 YLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGG---PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135 (676)
Q Consensus 59 ~~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGG---vDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e 135 (676)
.....++..+.+...+... |+-.-+-=--|+ .|..++-.++..+.+.| .++||..-.+.
T Consensus 69 ~~~~~~~i~~~l~~al~~v---p~a~GvnNhmGS~~T~~~~~m~~vl~~l~~~g---------------l~FvDS~T~~~ 130 (213)
T PF04748_consen 69 TGMSEEEIRKRLEAALARV---PGAVGVNNHMGSRFTSDREAMRWVLEVLKERG---------------LFFVDSRTTPR 130 (213)
T ss_dssp TTS-HHHHHHHHHHHHCCS---TT-SEEEEEE-CCHHC-HHHHHHHHHHHHHTT----------------EEEE-S--TT
T ss_pred CCCCHHHHHHHHHHHHHHC---CCcEEEecCCCccccCCHHHHHHHHHHHHHcC---------------CEEEeCCCCcc
Confidence 3344556666665555432 111111111232 46777777777776654 35899887655
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHH
Q 005804 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (676)
Q Consensus 136 S~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET 207 (676)
|. +.+.|+++|+|+...++ |... ..+.+...+.+ +-+.+.|++.|. .|++||-.+.-++.
T Consensus 131 s~-----a~~~A~~~gvp~~~rdv---fLD~-~~~~~~I~~ql--~~~~~~A~~~G~-aI~Igh~~p~Tl~~ 190 (213)
T PF04748_consen 131 SV-----APQVAKELGVPAARRDV---FLDN-DQDEAAIRRQL--DQAARIARKQGS-AIAIGHPRPETLEA 190 (213)
T ss_dssp -S-----HHHHHHHCT--EEE-SE---ETTS-T-SHHHHHHHH--HHHHHHHHCCSE-EEEEEE-SCCHHHH
T ss_pred cH-----HHHHHHHcCCCEEeece---ecCC-CCCHHHHHHHH--HHHHHhhhhcCc-EEEEEcCCHHHHHH
Confidence 43 56678999999987654 2222 12344444443 346788888774 79999999986653
No 170
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=44.73 E-value=13 Score=43.57 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=32.5
Q ss_pred CCCcccccccCCcceEeeeccC---ccccccccccCCCeeEeec-------------chhhhhhhc
Q 005804 1 MARGSIVSAQSRTTSTLLSTLV---ARLSLSSVKCRIPFTRSQY-------------LPSIRLFCK 50 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~-------------~~f~~~~c~ 50 (676)
|.|+|.+..+|.+...++++.. ..++ ++.. +++||+|| +||+..+|.
T Consensus 150 ~vHSy~v~~~p~~~~~v~a~~~~g~~~Ia--AI~~-gnI~GVQFHPE~s~~~G~~L~~nFl~~~~~ 212 (538)
T PLN02617 150 FVHSYRATPSDENKDWVLATCNYGGEFIA--SVRK-GNVHAVQFHPEKSGATGLSILRRFLEPKSS 212 (538)
T ss_pred EEeEEEEEecCCCCcEEEEEEccCCCcEE--EEEe-CCEEEEEcCCccCchhHHHHHHHHHHhhhh
Confidence 4699998888877665544443 2456 6665 48999999 667666663
No 171
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=44.05 E-value=3.6e+02 Score=30.07 Aligned_cols=104 Identities=9% Similarity=0.031 Sum_probs=57.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC--CCc---HHH----HHHHHHHHHh----
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR--EES---KEE----ANIVSHRVSD---- 149 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR--~eS---~~E----ae~V~~l~~~---- 149 (676)
+||+||+-|..-|.-++....+..+.. +...+++++||-.... ... ..+ .+.+++.+++
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~--------g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~ 77 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEA--------AETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGD 77 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhc--------CCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 789999999999987776655554331 0112788888643211 011 111 2334444443
Q ss_pred --cCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 150 --MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 150 --LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
-|++++..-..-..+.-..|++- +.+.++|+++++|.|++|--|+
T Consensus 78 ~~~gV~ve~~vv~~~~~~~~~G~pa--------e~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 78 DASSVTIETALLGTDEYLFGPGDYA--------EVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred ccCCCceEEEEEeccccccCCCCHH--------HHHHHHHHHcCCCEEEECCCCC
Confidence 37776544321000000112221 2345789999999999998774
No 172
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=43.62 E-value=1.2e+02 Score=31.11 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=52.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCc--HHHHHHHHH-HHHhcCCeEE-EE
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES--KEEANIVSH-RVSDMGIRCE-IV 157 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS--~~Eae~V~~-l~~~LGI~~~-iv 157 (676)
+.++.+|+|||.-=..+...|.+.. .. .|. +++.+.+|..+=+.. ..-..++++ +....+++-. +.
T Consensus 22 ~~~~~l~lsGGstp~~~y~~L~~~~--~i-------~w~-~v~~f~~DEr~Vp~~~~~Sn~~~~~~~ll~~~~~~~~~v~ 91 (219)
T cd01400 22 RGRFSLALSGGSTPKPLYELLAAAP--AL-------DWS-KVHVFLGDERCVPPDDPDSNYRLAREALLSHVAIPAANIH 91 (219)
T ss_pred cCeEEEEECCCccHHHHHHHhcccc--CC-------CCc-eEEEEEeeccccCCCCcccHHHHHHHHhhccCCCCHhhEE
Confidence 4789999999998887766654321 12 232 788889998653211 112234554 4456666521 12
Q ss_pred ECccccCCCCCCChHHHHHHHHHHH-HHHHHH-HcCCCEEeec
Q 005804 158 RCDWLDGRPKQGHLQEAARDMRYRL-FQKVCI-QHQIGVLLIA 198 (676)
Q Consensus 158 ~~~~~~~~~~~gn~E~~AR~iRY~~-L~~~A~-e~g~~~LatG 198 (676)
..+ ....+++.|+. |+. +.+... .-++|.+++|
T Consensus 92 ~~~------~~~~~~~~a~~--y~~~i~~~~~~~~~~Dl~lLG 126 (219)
T cd01400 92 PIP------TELGPEDAAAA--YEKELRALFGGVPPFDLVLLG 126 (219)
T ss_pred eCC------CCCCHHHHHHH--HHHHHHHHhcCCCCCCEEEEC
Confidence 111 11235666554 432 222211 1257777776
No 173
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=43.22 E-value=15 Score=37.59 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=27.5
Q ss_pred CCCcccccccCCcceEeeeccCccc--cccccccCCCeeEeecc
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARL--SLSSVKCRIPFTRSQYL 42 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~q~~ 42 (676)
|.|+|.|. |++..++++|..++- ...++.. +++||+||-
T Consensus 151 ~~HS~~v~--p~~~~~l~~t~~~~~~~~v~a~~~-~~i~GvQFH 191 (210)
T CHL00188 151 FVHSYGVM--PKSQACATTTTFYGKQQMVAAIEY-DNIFAMQFH 191 (210)
T ss_pred EeCccEec--CCCCceEEEEEecCCcceEEEEec-CCEEEEecC
Confidence 57999884 667888888865540 0007775 589999996
No 174
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.36 E-value=63 Score=29.50 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=40.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEEC---CC--------CCCcHHHHHHHHHHHHhcCC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH---GL--------REESKEEANIVSHRVSDMGI 152 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDH---GL--------R~eS~~Eae~V~~l~~~LGI 152 (676)
+|+|+.+||.-|+.++.-+.++.++. |++.++.+..+.- -. -|.-.--...+++.+...|+
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~--------gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~i 73 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKER--------GVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGI 73 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--------CCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCC
Confidence 58999999999999988777766542 3333444443210 00 01122234556777777888
Q ss_pred eEEEEE
Q 005804 153 RCEIVR 158 (676)
Q Consensus 153 ~~~iv~ 158 (676)
|+.+.+
T Consensus 74 pv~~I~ 79 (99)
T cd05565 74 KLVTTT 79 (99)
T ss_pred CEEEeC
Confidence 887665
No 175
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=38.41 E-value=62 Score=29.04 Aligned_cols=69 Identities=13% Similarity=-0.013 Sum_probs=42.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEEC----C-------CCCCcHHHHHHHHHHHHhcC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH----G-------LREESKEEANIVSHRVSDMG 151 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDH----G-------LR~eS~~Eae~V~~l~~~LG 151 (676)
.+|+++..+|.=|+.++.-+.++..+ .|++.++.+..+.- . +-|.-....+.+++.+...|
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~--------~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ 75 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEE--------YGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKG 75 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHH--------CCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcC
Confidence 68999999999998777666665543 23433444433210 0 01222345666777888888
Q ss_pred CeEEEEEC
Q 005804 152 IRCEIVRC 159 (676)
Q Consensus 152 I~~~iv~~ 159 (676)
+|+.+++.
T Consensus 76 ipv~~I~~ 83 (95)
T TIGR00853 76 IPVEVING 83 (95)
T ss_pred CCEEEeCh
Confidence 88877654
No 176
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=38.16 E-value=4.5e+02 Score=27.53 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=54.5
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC--CCCc-HHHHHHHHH-HHHhcCCeE-
Q 005804 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL--REES-KEEANIVSH-RVSDMGIRC- 154 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL--R~eS-~~Eae~V~~-l~~~LGI~~- 154 (676)
...+++.+|+|||..-..+...|.+....+ ...|. +++.+.+|-.+ -.+. ..-..++++ +....+++-
T Consensus 30 ~~~~~~~i~lsgGstP~~~y~~L~~~~~~~------~i~w~-~v~~f~~DEr~~vp~~~~~Sn~~~~~~~l~~~~~i~~~ 102 (259)
T TIGR00502 30 TAARPFVLGLPTGGTPIGTYKQLIELHQAG------KISFQ-NVTTFNMDEYAGLSEEHPESYHSFMHNNFFQHIDIKPE 102 (259)
T ss_pred cccCceEEEEcCCCChHHHHHHHHHHhhcc------CCchh-HeEEEeCeecCCCCCCchHHHHHHHHHHhcccCCCCHH
Confidence 345779999999988877777665432221 12332 78888899764 2221 122334444 444455543
Q ss_pred EEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHc-CCCEEeecc
Q 005804 155 EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH-QIGVLLIAH 199 (676)
Q Consensus 155 ~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~-g~~~LatGH 199 (676)
.+...+ ....++++.|+. |+- ..++. ++|.+++|=
T Consensus 103 ~i~~~~-----~~~~~~~~~a~~--y~~---~i~~~~~~Dl~llG~ 138 (259)
T TIGR00502 103 NINILN-----GNAPDLEAECRR--YEE---KIRSYGGIDLFMGGI 138 (259)
T ss_pred HEecCC-----CCccCHHHHHHH--HHH---HHHHcCCCCEEEEcc
Confidence 111111 111256777764 332 22222 577777763
No 177
>PRK00955 hypothetical protein; Provisional
Probab=37.15 E-value=2.4e+02 Score=33.82 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=17.8
Q ss_pred CeEEEEEcCC-hhHHHHHHHHHh
Q 005804 83 HRIALGVSGG-PDSMALCVLTAG 104 (676)
Q Consensus 83 ~rVlVAVSGG-vDSmaLl~LL~~ 104 (676)
-++..+||+| +|||+.-+-..+
T Consensus 66 P~l~~~vs~g~~dsmv~~yt~~~ 88 (620)
T PRK00955 66 PRLFFLVSAGNMDSMVNHYTASK 88 (620)
T ss_pred CcEEEEeccccHHHHHhhcchhh
Confidence 5799999999 899998765543
No 178
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=36.94 E-value=3.6e+02 Score=29.25 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=12.1
Q ss_pred HHHHHHHHhCCCceeeCCCC
Q 005804 259 DDMYKICQGGNRDWVEDPTN 278 (676)
Q Consensus 259 ~EIr~y~~~~gLp~veDpSN 278 (676)
+.+.++.+..++|.+---+.
T Consensus 189 ~~l~~I~~~~~vPLVlHGgS 208 (283)
T PRK07998 189 PLLKRIAEVSPVPLVIHGGS 208 (283)
T ss_pred HHHHHHHhhCCCCEEEeCCC
Confidence 55566666667776554443
No 179
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=36.53 E-value=27 Score=35.01 Aligned_cols=34 Identities=9% Similarity=-0.050 Sum_probs=29.7
Q ss_pred cccccC-CcceEeeeccCccccccccccCC-C-eeEeec
Q 005804 6 IVSAQS-RTTSTLLSTLVARLSLSSVKCRI-P-FTRSQY 41 (676)
Q Consensus 6 ~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~q~ 41 (676)
..+++| ....|+|+|+++.+- +..+++ + +-|+||
T Consensus 157 ~~sSlP~d~L~VTawTEnG~iM--gaRHkKY~~ieGVQf 193 (223)
T KOG0026|consen 157 EKDSFPSDELEVTAWTEDGLVM--AARHRKYKHIQGVQF 193 (223)
T ss_pred ecccCCccceeeeEeccCcEEE--eeeccccccccceee
Confidence 346788 889999999999998 889988 5 889999
No 180
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=36.37 E-value=48 Score=30.90 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=21.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g 109 (676)
+||+++++|+....-...++..+.+.|
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g 27 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAG 27 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCC
Confidence 489999999999999888888877664
No 181
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=36.32 E-value=4.3e+02 Score=30.57 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=64.4
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccccC
Q 005804 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG 164 (676)
Q Consensus 85 VlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~ 164 (676)
.+||+=|.-=++.++-|...+.+.++ ++..|-.|.- | ..-.++.+.++++.|+|++-..
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk~~~-----------kvllVaaD~~-R---pAA~eQL~~La~q~~v~~f~~~------ 162 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKKKGK-----------KVLLVAADTY-R---PAAIEQLKQLAEQVGVPFFGSG------ 162 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHHcCC-----------ceEEEecccC-C---hHHHHHHHHHHHHcCCceecCC------
Confidence 45889998888888887766655543 5667777874 4 4456778899999999986541
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHH
Q 005804 165 RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (676)
Q Consensus 165 ~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~Lmr 211 (676)
...++-+.++.. -+.+++.++|+|+.=+--..+++.-||.
T Consensus 163 --~~~~Pv~Iak~a-----l~~ak~~~~DvvIvDTAGRl~ide~Lm~ 202 (451)
T COG0541 163 --TEKDPVEIAKAA-----LEKAKEEGYDVVIVDTAGRLHIDEELMD 202 (451)
T ss_pred --CCCCHHHHHHHH-----HHHHHHcCCCEEEEeCCCcccccHHHHH
Confidence 112345444432 2456777788887765555555555543
No 182
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=34.56 E-value=4.5e+02 Score=31.31 Aligned_cols=106 Identities=15% Similarity=0.059 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC---CcHHH
Q 005804 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE---ESKEE 139 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~---eS~~E 139 (676)
|++..+.+.+.+.+ +++|+|-=---+|.++...++.+..+.- |. .-+..+|-|.+.+ -+.
T Consensus 55 m~~a~~ri~~ai~~-----~e~I~I~gDyD~DGitstail~~~L~~~--------g~--~~~~~~IP~R~~eGYGl~~-- 117 (575)
T PRK11070 55 IEKAVELLYNALRE-----GTRIIVVGDFDADGATSTALSVLALRSL--------GC--SNVDYLVPNRFEDGYGLSP-- 117 (575)
T ss_pred HHHHHHHHHHHHHC-----CCEEEEEEecCccHHHHHHHHHHHHHHc--------CC--CceEEEeCCCCcCCCCCCH--
Confidence 55555555555544 5889888888888887777766655431 11 1123455543321 132
Q ss_pred HHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 140 ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 140 ae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
+.++++.+ .|..+.+. +|- ..++.++. ++|+++|++.|+|-||..+
T Consensus 118 -~~i~~~~~-~~~~LiIt-vD~-----Gi~~~e~i----------~~a~~~gidvIVtDHH~~~ 163 (575)
T PRK11070 118 -EVVDQAHA-RGAQLIVT-VDN-----GISSHAGV----------AHAHALGIPVLVTDHHLPG 163 (575)
T ss_pred -HHHHHHHh-cCCCEEEE-EcC-----CcCCHHHH----------HHHHHCCCCEEEECCCCCC
Confidence 33445444 47665432 331 12244443 4578889999999999653
No 183
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=33.66 E-value=3.7e+02 Score=27.76 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=52.3
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEE--CCCCCCc-H-HHHHHHHHHHHhcCCeEEEE
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD--HGLREES-K-EEANIVSHRVSDMGIRCEIV 157 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVD--HGLR~eS-~-~Eae~V~~l~~~LGI~~~iv 157 (676)
++..++|||||.-=..++..|....... ...| .+++.+.+| .|.-.+. . ......+.++++++++...+
T Consensus 32 ~~~~~iglsgG~T~~~~~~~L~~~~~~~------~~~~-~~v~v~~~DEr~gv~~~~~~s~~~~~~~~l~~~~~~~~~~~ 104 (261)
T PRK00443 32 ERPFVLGLATGSSPLETYKALIELHKAG------KVDF-SRVTTFNLDEYVGLPADHPESYRYFMRENFFDHVDIPPENI 104 (261)
T ss_pred CCceEEEecCCCCHHHHHHHHHHHhhhc------CCch-HHeEEEeCceecCCCCCChHHHHHHHHHHHhccCCCCHHHe
Confidence 3457899999987666665554211110 0122 278888898 5553221 1 22223345778888776444
Q ss_pred ECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccc
Q 005804 158 RCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (676)
Q Consensus 158 ~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHh 200 (676)
.... .....++..++.+.- .+. ...++|.+++|=-
T Consensus 105 ~~p~----~~~~~~~~~~~~~~~-~l~---~~~~~Dl~llGiG 139 (261)
T PRK00443 105 NLLN----GNAPDPEAECRRYEE-KIK---SAGGIDLQILGIG 139 (261)
T ss_pred ecCC----CCCcCHHHHHHHHHH-HHH---HcCCCCEEEEccC
Confidence 3321 111234555554321 111 1135777777643
No 184
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=33.29 E-value=4.2e+02 Score=30.28 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=54.1
Q ss_pred EEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEEC--CCC--CCcHHHHHHHHHHHHhcCCeE--EEEECc
Q 005804 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH--GLR--EESKEEANIVSHRVSDMGIRC--EIVRCD 160 (676)
Q Consensus 87 VAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDH--GLR--~eS~~Eae~V~~l~~~LGI~~--~iv~~~ 160 (676)
|.++||++.++.-.. ..|. +...+++-. +++ +-+.++++..++.++++|+.. .+..++
T Consensus 137 vSiaGG~~~a~~~a~-----~~g~-----------~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~Hap 200 (413)
T PTZ00372 137 VSASGGVDNSPINAY-----NIAG-----------QAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGS 200 (413)
T ss_pred EeccccHHHHHHHHH-----HcCC-----------CEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecC
Confidence 456899998654322 2221 344455443 343 467889999999999998753 444544
Q ss_pred cccCCCCCC-ChHHHHHHHH-HHHHHHHHHHcCCCEEee--cccc
Q 005804 161 WLDGRPKQG-HLQEAARDMR-YRLFQKVCIQHQIGVLLI--AHHA 201 (676)
Q Consensus 161 ~~~~~~~~g-n~E~~AR~iR-Y~~L~~~A~e~g~~~Lat--GHha 201 (676)
.. -.... +.+...+.+. +.--.+.|.++|+.+|++ |++.
T Consensus 201 Yl--INLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~ 243 (413)
T PTZ00372 201 YL--INLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTV 243 (413)
T ss_pred ce--ecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 32 11111 2222222111 112345788999998885 6654
No 185
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=32.86 E-value=30 Score=36.88 Aligned_cols=47 Identities=15% Similarity=0.025 Sum_probs=31.2
Q ss_pred CCccccc--ccC------CcceEeeeccC--cc--ccccccccCC-CeeEeec--chhhhhhhc
Q 005804 2 ARGSIVS--AQS------RTTSTLLSTLV--AR--LSLSSVKCRI-PFTRSQY--LPSIRLFCK 50 (676)
Q Consensus 2 s~g~~v~--~~~------~~~~~~~~~~~--~~--~~~~~~~~~~-~~~~~q~--~~f~~~~c~ 50 (676)
-|+..|+ .+| ..|.++|++.. .. ++ ++.+.+ ++||+|| +--.+.|+.
T Consensus 160 ~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis--~ie~~~~pi~gvQFHPEks~few~~ 221 (273)
T cd01747 160 NHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFIS--TVEAYKYPIYGVQWHPEKNAFEWKK 221 (273)
T ss_pred hcccccCHhhcccccccccceEEEEEEecCCCceEEE--EEEecCCceEEEecCCCcccccccc
Confidence 3777774 333 46788998755 32 34 788877 9999999 333555654
No 186
>PRK05920 aromatic acid decarboxylase; Validated
Probab=32.06 E-value=85 Score=32.30 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCC
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGF 110 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~ 110 (676)
++||++|+|||.=+.-...+++.+.+.|.
T Consensus 3 ~krIllgITGsiaa~ka~~lvr~L~~~g~ 31 (204)
T PRK05920 3 MKRIVLAITGASGAIYGVRLLECLLAADY 31 (204)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHHCCC
Confidence 57899999999988878888888876653
No 187
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.68 E-value=23 Score=36.26 Aligned_cols=38 Identities=8% Similarity=-0.041 Sum_probs=23.0
Q ss_pred CCCcccccccCCcceEeeeccCcccc---ccccccCCCeeEeecc
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLS---LSSVKCRIPFTRSQYL 42 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~ 42 (676)
|.|++. |+.+..+++|..++.. ..++....++||+||-
T Consensus 151 ~~HS~~----~~~~~~l~~sa~~~~~g~~~~a~~~~~~i~GvQFH 191 (210)
T PRK14004 151 FIHSYR----PTGAEGNAITGLCDYYQEKFPAVVEKENIFGTQFH 191 (210)
T ss_pred Eeceee----cCCCCcceEEEeeeECCEEEEEEEecCCEEEEeCC
Confidence 468873 4445556666655541 1134445599999996
No 188
>PRK01254 hypothetical protein; Provisional
Probab=31.03 E-value=2.5e+02 Score=34.11 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=58.3
Q ss_pred CeEEEEEcCC-hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHh-c-CCeEEEEEC
Q 005804 83 HRIALGVSGG-PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD-M-GIRCEIVRC 159 (676)
Q Consensus 83 ~rVlVAVSGG-vDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~-L-GI~~~iv~~ 159 (676)
-++..+||+| +||||.=+-..+-.+. .+.+.... .+|.|++++ -..++. .+++ + ++|+.+
T Consensus 92 PrLffgVsaGn~DSMvn~YTa~kk~R~-----~DaYtPgg-------~~g~RPdrA-~ivy~~-~~r~~f~~~pvil--- 154 (707)
T PRK01254 92 PNLFFGVTAGNMDSMINRYTADRKLRH-----DDAYTPDN-------VAGKRPDRA-TLVYTQ-RCKEAYKDVPVIL--- 154 (707)
T ss_pred CcEEEEeccccHHHHHHhccccccccc-----ccCcCCCC-------CCCCCCChh-HHHHHH-HHHHHCCCCCEEe---
Confidence 6799999999 9999986654321111 11111110 147888754 222222 2333 2 555532
Q ss_pred ccccCCCCCCChHHH-HHHHHHHHH-----HHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCC
Q 005804 160 DWLDGRPKQGHLQEA-ARDMRYRLF-----QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL 219 (676)
Q Consensus 160 ~~~~~~~~~gn~E~~-AR~iRY~~L-----~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~ 219 (676)
|++|.. .|..-|++- ..+...-++|.|+.|---. ++-.+.-+|.+|..+.
T Consensus 155 ---------GGieaSlrR~aHYDyWsdkvr~sil~d~~aD~lvyGmgE~-~i~e~a~~l~~g~~~~ 210 (707)
T PRK01254 155 ---------GGIEASLRRIAHYDYWSDKVRRSVLVDAKADILMYGNAER-PLVEVAHRLAMGEPIS 210 (707)
T ss_pred ---------ccccHHhhhhhhcchhhcccchhhcccCCCCEEEECccHH-HHHHHHHHHHcCCChh
Confidence 345543 345556552 2333455799999995433 3333555666676543
No 189
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=30.69 E-value=42 Score=36.59 Aligned_cols=38 Identities=11% Similarity=-0.136 Sum_probs=31.1
Q ss_pred CCcccc----cccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 2 ARGSIV----SAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 2 s~g~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
||-+.| ...|++..+||+++.+++. .+..++ +.+++|+
T Consensus 192 Sr~~~V~~~~i~~~~~l~vLA~S~~~gv~--~~~~~~~r~~~vQg 234 (302)
T PRK05368 192 SRYTEVREEDIRAATGLEILAESEEAGVY--LFASKDKREVFVTG 234 (302)
T ss_pred eehhhccHHHhccCCCCEEEecCCCCCeE--EEEeCCCCEEEEEC
Confidence 455666 4589999999999999999 776644 7999999
No 190
>PRK06852 aldolase; Validated
Probab=30.04 E-value=3.3e+02 Score=29.87 Aligned_cols=107 Identities=8% Similarity=-0.125 Sum_probs=57.3
Q ss_pred CCeEEEEEcCC----------hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC--cHHHHHHHHHHHHh
Q 005804 82 HHRIALGVSGG----------PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--SKEEANIVSHRVSD 149 (676)
Q Consensus 82 ~~rVlVAVSGG----------vDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e--S~~Eae~V~~l~~~ 149 (676)
+..++|=+||+ ++| .+..-..++.+-|. ..++...-+.+||+.|=..+ .-++...+.+-|.+
T Consensus 92 ~~~lIlkl~~~t~l~~~~~~~p~~-~l~~sVeeAvrlG~-----~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~ 165 (304)
T PRK06852 92 DVPYLVKLNSKTNLVKTSQRDPLS-RQLLDVEQVVEFKE-----NSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHK 165 (304)
T ss_pred CCcEEEEECCCCCcCCcccCCccc-cceecHHHHHhcCC-----ccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 45699999986 444 44333445444331 11122245678999993211 12244555667899
Q ss_pred cCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccc
Q 005804 150 MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (676)
Q Consensus 150 LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHh 200 (676)
+|+|+...-............++. +.+ ..++|.++|+|.|=+-=.
T Consensus 166 ~GlPll~~~yprG~~i~~~~~~~~----ia~--aaRiaaELGADIVKv~y~ 210 (304)
T PRK06852 166 HGLIAVLWIYPRGKAVKDEKDPHL----IAG--AAGVAACLGADFVKVNYP 210 (304)
T ss_pred hCCcEEEEeeccCcccCCCccHHH----HHH--HHHHHHHHcCCEEEecCC
Confidence 999987632211100011112232 222 336889999998876544
No 191
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=29.71 E-value=3e+02 Score=28.01 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=48.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
.||+|-+||+...+- .++..+...+ ....+.++.-|+. +. .+.++|++.|||+...+...
T Consensus 2 ~ki~vl~sg~gs~~~--~ll~~~~~~~---------~~~~I~~vvs~~~---~~-----~~~~~a~~~gIp~~~~~~~~- 61 (200)
T PRK05647 2 KRIVVLASGNGSNLQ--AIIDACAAGQ---------LPAEIVAVISDRP---DA-----YGLERAEAAGIPTFVLDHKD- 61 (200)
T ss_pred ceEEEEEcCCChhHH--HHHHHHHcCC---------CCcEEEEEEecCc---cc-----hHHHHHHHcCCCEEEECccc-
Confidence 479999999843333 3334333221 1125555555654 11 26788999999997754211
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccc
Q 005804 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (676)
Q Consensus 163 ~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHh 200 (676)
. .+.+... ..+.+..++.++|+++....
T Consensus 62 -~----~~~~~~~-----~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 62 -F----PSREAFD-----AALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred -c----CchhHhH-----HHHHHHHHHhCcCEEEhHHh
Confidence 0 0111111 12345556778999888654
No 192
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.71 E-value=82 Score=33.89 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEEECccccCCC-CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc--------hhH
Q 005804 135 ESKEEANIVSHRVSDMGIRCEIVRCDWLDGRP-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD--------DQA 205 (676)
Q Consensus 135 eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~-~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD--------Dqa 205 (676)
...+..+.-.++|+++|++...++.-|..... ...++-..--..-..-+-++|++.|+..++-.|+.. ++.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~ 108 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL 108 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH
Confidence 36777888889999999999999988863110 000000000112223356679999999999999876 455
Q ss_pred HHHHHHhhcCCCCCCc
Q 005804 206 ELFILRLSRNSGVLGL 221 (676)
Q Consensus 206 ET~LmrL~RGsG~~GL 221 (676)
+..|- ....-|+.|+
T Consensus 109 ~~~f~-~~~~~Gv~Gv 123 (273)
T PF10566_consen 109 DEAFK-LYAKWGVKGV 123 (273)
T ss_dssp HHHHH-HHHHCTEEEE
T ss_pred HHHHH-HHHHcCCCEE
Confidence 54443 3344444443
No 193
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=29.27 E-value=1.5e+02 Score=28.78 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc
Q 005804 137 KEEANIVSHRVSD-MGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (676)
Q Consensus 137 ~~Eae~V~~l~~~-LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha 201 (676)
..+.+.+.+.+.+ .++.+.++|- .........+..... ..-...|.++|++.|+..+++.|..
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~-l~~~~~~~~~~~~~~-~~~~~~l~~la~~~~~~vi~v~H~~ 189 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDP-LQSLHDGDENSNSAV-AQLMQELKRLAKEYGVAVILVHHTN 189 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE--GGGG--S-TT-HHHH-HHHHHHHHHHHHHH--EEEEEEEE-
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcC-HHHHhcCCCCCHHHH-HHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3455667777777 7889888873 221111112222222 3335568889999999999998864
No 194
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.11 E-value=6.5e+02 Score=27.10 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=21.6
Q ss_pred CeEEEEEcCChhH----HHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC
Q 005804 83 HRIALGVSGGPDS----MALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (676)
Q Consensus 83 ~rVlVAVSGGvDS----maLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL 132 (676)
..|++.+|-|.-. -.+..++..+.+. .. -.+++|.|||.
T Consensus 43 ~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~-~~----------vpv~lHlDH~~ 85 (281)
T PRK06806 43 SPIILQIAEVRLNHSPLHLIGPLMVAAAKQ-AK----------VPVAVHFDHGM 85 (281)
T ss_pred CCEEEEcCcchhccCChHHHHHHHHHHHHH-CC----------CCEEEECCCCC
Confidence 6788888875532 1222233333332 11 13689999984
No 195
>PRK08227 autoinducer 2 aldolase; Validated
Probab=29.02 E-value=2.5e+02 Score=30.09 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=55.4
Q ss_pred CCeEEEEEcCC------hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC--cHHHHHHHHHHHHhcCCe
Q 005804 82 HHRIALGVSGG------PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--SKEEANIVSHRVSDMGIR 153 (676)
Q Consensus 82 ~~rVlVAVSGG------vDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e--S~~Eae~V~~l~~~LGI~ 153 (676)
+..+++=+||| .+...+..-..++.+-|. .-..+||+.|=..| .-++...+.+-|.++|+|
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGA-----------dAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~P 142 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNA-----------CAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMP 142 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCC-----------CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence 35699999997 322333322344444443 45678999993211 122445566678999999
Q ss_pred EEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecc
Q 005804 154 CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (676)
Q Consensus 154 ~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGH 199 (676)
+.... +..+........+ ..-.+++.++|+|.|=+-=
T Consensus 143 lla~~-------prG~~~~~~~~~i--a~aaRiaaELGADiVK~~y 179 (264)
T PRK08227 143 VMAVT-------AVGKDMVRDARYF--SLATRIAAEMGAQIIKTYY 179 (264)
T ss_pred EEEEe-------cCCCCcCchHHHH--HHHHHHHHHHcCCEEecCC
Confidence 87622 1111111111222 2345788899999886643
No 196
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=28.34 E-value=1.7e+02 Score=26.89 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=46.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECC-------------CCCCcHHHHHHHHHHHHh
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG-------------LREESKEEANIVSHRVSD 149 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHG-------------LR~eS~~Eae~V~~l~~~ 149 (676)
++|+++..||.=|+.++.-+.++.++. |++.++.+.-+.-. +-|.-.-..+.+++.|..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~--------gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~ 73 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQ--------GKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAK 73 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHC--------CCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhh
Confidence 479999999998887777666665542 23223333322100 001122334567788888
Q ss_pred cCCeEEEEECccccCCCCCCChHHHH
Q 005804 150 MGIRCEIVRCDWLDGRPKQGHLQEAA 175 (676)
Q Consensus 150 LGI~~~iv~~~~~~~~~~~gn~E~~A 175 (676)
.|+|+.+.+.. .+.|..-+.+...
T Consensus 74 ~~ipv~~I~~~--~Y~~~~~~~~~~~ 97 (104)
T PRK09590 74 VGKPVVQIPPQ--AYIPIPMGIEKMA 97 (104)
T ss_pred cCCCEEEeCHH--HcCCCccCHHHHH
Confidence 89999887643 2333233445443
No 197
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=28.33 E-value=85 Score=31.52 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.3
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGG 109 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g 109 (676)
||+||+|||.-..-...++..+.+.|
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~g 26 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEAG 26 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 58999999999888888888887665
No 198
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=28.02 E-value=1e+02 Score=30.93 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g 109 (676)
+||++|+||+.-+.-...++..+++.|
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~g 28 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKRG 28 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHCC
Confidence 689999999999998888888876654
No 199
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=27.73 E-value=1.1e+02 Score=31.42 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCChhHHH-HHHHHHhhhhCC
Q 005804 81 PHHRIALGVSGGPDSMA-LCVLTAGWKTGG 109 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSma-Ll~LL~~~~~~g 109 (676)
.+++|++|+|||.=+.- ...++..+.+.|
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G 33 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEG 33 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCc
Confidence 46899999999988887 577888776664
No 200
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=2.4e+02 Score=27.06 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcCCh----------hHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC
Q 005804 68 EAFSRRMAMAGLKPHHRIALGVSGGP----------DSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135 (676)
Q Consensus 68 ~~~~~~i~~~~i~~~~rVlVAVSGGv----------DSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e 135 (676)
+.|.+.+.. +..+++|.++++|++ |-.++.=+..+..+. ...++..|||+-|-|+.
T Consensus 13 e~~~~~~~~--~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~----------ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 13 ESFEETLKN--VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH----------APEDVHFVHVYVGNRPY 78 (128)
T ss_pred HHHHHHHHH--HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh----------CCCceEEEEEEecCCCc
Confidence 444444444 355688999999999 455665566665542 12378899999998763
No 201
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=27.47 E-value=3.7e+02 Score=27.14 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=51.0
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
.||+|-+||+...+.. ++..+...+ ...++.+|..|+. + ..+.++|+++|||+++.+..
T Consensus 1 ~riail~sg~gs~~~~--ll~~~~~~~---------l~~~I~~vi~~~~---~-----~~~~~~A~~~gip~~~~~~~-- 59 (190)
T TIGR00639 1 KRIVVLISGNGSNLQA--IIDACKEGK---------IPASVVLVISNKP---D-----AYGLERAAQAGIPTFVLSLK-- 59 (190)
T ss_pred CeEEEEEcCCChhHHH--HHHHHHcCC---------CCceEEEEEECCc---c-----chHHHHHHHcCCCEEEECcc--
Confidence 3799999998765543 334333322 1225666666763 1 24577889999998875321
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc
Q 005804 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (676)
Q Consensus 163 ~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha 201 (676)
... +.+. .-..+.++.++.+.|++++....
T Consensus 60 ~~~----~~~~-----~~~~~~~~l~~~~~D~iv~~~~~ 89 (190)
T TIGR00639 60 DFP----SREA-----FDQAIIEELRAHEVDLVVLAGFM 89 (190)
T ss_pred ccC----chhh-----hhHHHHHHHHhcCCCEEEEeCcc
Confidence 110 1010 01234556677889998887553
No 202
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=27.39 E-value=1e+02 Score=31.24 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhh
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKT 107 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~ 107 (676)
++|++|+|||+-+.-...++..+.+
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k 26 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRD 26 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHh
Confidence 5899999999998888888888765
No 203
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=26.89 E-value=1.1e+02 Score=30.67 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=21.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g 109 (676)
+||+||+||+.-..-...++..+++.+
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~g 27 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKLG 27 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHCC
Confidence 479999999998887788887776554
No 204
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.42 E-value=1.8e+02 Score=29.33 Aligned_cols=58 Identities=17% Similarity=0.195 Sum_probs=43.9
Q ss_pred EEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEE
Q 005804 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIV 157 (676)
Q Consensus 85 VlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv 157 (676)
++||.+|--=++.++.|...+..++. ++..++.|.. | ..-.++.+.+++.+|+|++..
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~~-----------~v~lis~D~~-R---~ga~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKGK-----------KVALISADTY-R---IGAVEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-------------EEEEEESTS-S---THHHHHHHHHHHHHTEEEEES
T ss_pred EEECCCCCchHhHHHHHHHHHhhccc-----------cceeecCCCC-C---ccHHHHHHHHHHHhccccchh
Confidence 67899998888998888887765532 6778888875 3 344577899999999998753
No 205
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=26.36 E-value=5.4e+02 Score=31.09 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=55.3
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhhh-CCCCCCCCCCCCCCcEEEEEEECCC--CCCcHH-HHHHHHH-HHHhcCCeE
Q 005804 80 KPHHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVDHGL--REESKE-EANIVSH-RVSDMGIRC 154 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDSmaLl~LL~~~~~-~g~~~~~~~~g~~~~L~aVhVDHGL--R~eS~~-Eae~V~~-l~~~LGI~~ 154 (676)
..++.+.+|+|||..=.-+...|.+... .+. .|. +++.+.+|--. -+++.+ -..++++ +....+|+-
T Consensus 56 ~~~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l-------~w~-~V~~F~~DEr~~vp~d~~~Sn~~~~re~L~~~i~Ip~ 127 (652)
T PRK02122 56 AEGKPCVLGLATGSSPIGVYAELIRMHREEGL-------SFK-NVITFNLDEYYPMQPDSLQSYHRFMKENLFDHVDIPP 127 (652)
T ss_pred HhCCCEEEEEcCCcCHHHHHHHHHhhhhccCC-------Cch-heEEEeCeeccCCCCCcHHHHHHHHHHHhhccCCCCH
Confidence 4467899999999887777666654322 222 232 78888888654 222221 2233444 445556553
Q ss_pred EEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecc
Q 005804 155 EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (676)
Q Consensus 155 ~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGH 199 (676)
.-+.... .......+++.|+. |+- .+.+.-|+|.+++|=
T Consensus 128 ~ni~~~d--g~~~~~~~~~~~~~--Ye~--~I~~~gg~DlvLLGi 166 (652)
T PRK02122 128 ENIHIPD--GTIPKEEIDEYCRD--YEE--KIEAAGGIDFQLLGI 166 (652)
T ss_pred HHeecCC--CccCcCCHHHHHHH--HHH--HHHhhCCCcEEEeCC
Confidence 2222211 11011246666664 432 122223688888763
No 206
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=25.84 E-value=44 Score=40.70 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=26.3
Q ss_pred CCCcccccc-cCCc--ceEeeeccCc-cccccccccCC-CeeEeec
Q 005804 1 MARGSIVSA-QSRT--TSTLLSTLVA-RLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~-~~~~--~~~~~~~~~~-~~~~~~~~~~~-~~~~~q~ 41 (676)
|.|++.|.. .|+. ..+++.+.++ .+. ++.+.+ ++||+||
T Consensus 139 ~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~--ai~h~~~pi~GVQF 182 (742)
T TIGR01823 139 RYHSLYANPEGIDTLLPLCLTEDEEGIILM--SAQTKKKPWFGVQY 182 (742)
T ss_pred EEEEEEccCCCCCcceEEEEEEcCCCCeEE--EEEEcCCceEEEEe
Confidence 458877755 3444 4566656544 355 677777 9999999
No 207
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=25.30 E-value=5.6e+02 Score=27.46 Aligned_cols=106 Identities=21% Similarity=0.124 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHc---CCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHH
Q 005804 63 MTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~---~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~E 139 (676)
.+++.+.+.+.+.+. -++.++++-||+|||.==-+|..++......+.+ |. +-+.+++|-.+-+...+|
T Consensus 17 ~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGGSLi~~L~~~l~~~~~~~i~-------w~-kW~if~~DER~Vp~~~~d 88 (252)
T KOG3147|consen 17 EEELIEALAGYIAEKSEKALKKRGRFTLALSGGSLIQVLSKLLESPYQDDID-------WS-KWHIFFVDERVVPLDDPD 88 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCCcHHHHHHHHhcccccCCCC-------cc-ceEEEEEeccccCCCCCc
Confidence 345555555544432 2556788999999996434444433321111221 21 456788998876533332
Q ss_pred ---HHHHHHHHHhcCCeEE-EEECccccCCCCCCChHHHHHHHHH
Q 005804 140 ---ANIVSHRVSDMGIRCE-IVRCDWLDGRPKQGHLQEAARDMRY 180 (676)
Q Consensus 140 ---ae~V~~l~~~LGI~~~-iv~~~~~~~~~~~gn~E~~AR~iRY 180 (676)
..+-+.+..++.++.. +..++.. ..++.|+.|...-+
T Consensus 89 SNyg~~~~~~l~~v~~~~~~i~~id~~----L~~~~~~~a~~ye~ 129 (252)
T KOG3147|consen 89 SNYGLAKRHFLSKVPIPHYNIYPIDES----LIADAEEAADLYEK 129 (252)
T ss_pred ccHHHHHHhhhhhCCCCcCcEEECChh----hccCHHHHHHHHHH
Confidence 2334446677777766 5554432 22356777665443
No 208
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=24.95 E-value=9.1e+02 Score=26.17 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=11.7
Q ss_pred HHHHHHHHhCCCceeeCCC
Q 005804 259 DDMYKICQGGNRDWVEDPT 277 (676)
Q Consensus 259 ~EIr~y~~~~gLp~veDpS 277 (676)
+.+.++.+..++|-+---+
T Consensus 193 ~~L~~I~~~~~iPLVLHGg 211 (285)
T PRK07709 193 AEMEQVRDFTGVPLVLHGG 211 (285)
T ss_pred HHHHHHHHHHCCCEEEeCC
Confidence 4566666666777654444
No 209
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=24.10 E-value=2.2e+02 Score=28.70 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC-C-cHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-E-SKEEANIV 143 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~-e-S~~Eae~V 143 (676)
+.+.+.+.+.+ +.++.||+|||.--..+...|........ .|. +++.+.+|-..-+ + ...-...+
T Consensus 9 i~~~i~~~i~~-----~~~~~i~LsgGstp~~~y~~L~~~~~~~i-------~w~-~v~~~~~DEr~v~~~~~~Sn~~~~ 75 (199)
T PF01182_consen 9 IAEAIEEAIAE-----RGRAVIALSGGSTPKPLYQELAKLHKERI-------DWS-RVHFFNVDERVVPPDDPDSNYRML 75 (199)
T ss_dssp HHHHHHHHHHH-----CSSEEEEE--SCTHHHHHHHHHHHHHTCS-------CGG-GEEEEESEEESSTTTSTTSHHHHH
T ss_pred HHHHHHHHHHH-----CCCEEEEEcCCHHHHHHHHHHhhhccccC-------Chh-HeEEEeCcccccCCCCCccHHHHH
Confidence 34444555544 37799999999988888877766443222 232 7888889976522 1 11123344
Q ss_pred HH-HHHhcCCeEE-EEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcC------CCEEeecc
Q 005804 144 SH-RVSDMGIRCE-IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQ------IGVLLIAH 199 (676)
Q Consensus 144 ~~-l~~~LGI~~~-iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g------~~~LatGH 199 (676)
++ +....+|+-. +..++ ....++++.|+. |+ .++.+..+ +|.+++|=
T Consensus 76 ~~~l~~~~~i~~~~i~~~~-----~~~~~~~~~~~~--y~--~~l~~~~~~~~~p~~Dl~lLG~ 130 (199)
T PF01182_consen 76 REHLLDPLPIPPENIHPID-----GEADDPEEAAER--YE--QELASLGGEAGFPGFDLVLLGM 130 (199)
T ss_dssp HHHTGGGSGGGGGGEETSS-----TTTSSHHHHHHH--HH--HHHHHHSSSEECESBSEEEEE-
T ss_pred HHHhhccCCCCcceEEeCC-----CCCCCHHHHHHH--HH--HHHHHhccccCCCceeEEEecc
Confidence 44 4444555421 11111 012356777664 32 23333433 88888863
No 210
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.06 E-value=4.8e+02 Score=27.05 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=56.5
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
||+|-+||+---+=++ .+....+. ++.++.+|..|+.- .++.+.|++.|||..+++....
T Consensus 2 ki~VlaSG~GSNlqai---ida~~~~~--------~~a~i~~Visd~~~--------A~~lerA~~~gIpt~~~~~k~~- 61 (200)
T COG0299 2 KIAVLASGNGSNLQAI---IDAIKGGK--------LDAEIVAVISDKAD--------AYALERAAKAGIPTVVLDRKEF- 61 (200)
T ss_pred eEEEEEeCCcccHHHH---HHHHhcCC--------CCcEEEEEEeCCCC--------CHHHHHHHHcCCCEEEeccccC-
Confidence 7899999987554432 12222221 23478888888752 3577888999999987753211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 164 ~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
+ .|...-+.+.+..++.+.|+|++|=...
T Consensus 62 --~--------~r~~~d~~l~~~l~~~~~dlvvLAGyMr 90 (200)
T COG0299 62 --P--------SREAFDRALVEALDEYGPDLVVLAGYMR 90 (200)
T ss_pred --C--------CHHHHHHHHHHHHHhcCCCEEEEcchHH
Confidence 1 2333334566777888999999985433
No 211
>PLN02360 probable 6-phosphogluconolactonase
Probab=23.05 E-value=6.1e+02 Score=26.84 Aligned_cols=68 Identities=10% Similarity=0.177 Sum_probs=35.5
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcH--HHHHHHHH-HHHhcCCeE
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK--EEANIVSH-RVSDMGIRC 154 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~--~Eae~V~~-l~~~LGI~~ 154 (676)
++++..+.+|||||. ..-++..|. .... .....|. +++.+.+|-..-+... .-..++++ +....+|+-
T Consensus 38 ~~~~~~~~lalsGGS-~~~~~~~L~---~~~~---~~~idW~-~v~~f~~DER~Vp~~~~~SN~~~~r~~Ll~~~~i~~ 108 (268)
T PLN02360 38 VKERGVFAIALSGGS-LISFMGKLC---EAPY---NKTVDWA-KWYIFWADERVVAKNHADSNYKLAKDGLLSKVPVVP 108 (268)
T ss_pred HHhCCcEEEEECCCC-HHHHHHHHh---cccc---ccCCCCc-eEEEEeeecccCCCCCcchHHHHHHHHhhccCCCCh
Confidence 445678999999996 333333332 2110 0112342 7888899987543211 12334444 445555553
No 212
>PRK13390 acyl-CoA synthetase; Provisional
Probab=23.00 E-value=4.4e+02 Score=29.35 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHH
Q 005804 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~ 142 (676)
+.+....+.+.+...++.++++|++...-|+|.++++.-+.. . ...++.+|+++++ ++
T Consensus 30 l~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~---~-------------Ga~~~~l~~~~~~---~~--- 87 (501)
T PRK13390 30 LDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALR---S-------------GLYITAINHHLTA---PE--- 87 (501)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH---h-------------CCEEeccccCCCH---HH---
Confidence 344455566677778899999999999999999998765532 2 2356788998742 22
Q ss_pred HHHHHHhcCCeEEEE
Q 005804 143 VSHRVSDMGIRCEIV 157 (676)
Q Consensus 143 V~~l~~~LGI~~~iv 157 (676)
+..++...+.++.+.
T Consensus 88 ~~~~~~~~~~~~~i~ 102 (501)
T PRK13390 88 ADYIVGDSGARVLVA 102 (501)
T ss_pred HHHHHHhcCCcEEEE
Confidence 445556666666554
No 213
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=22.96 E-value=67 Score=34.94 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=55.5
Q ss_pred CeEEEEEcCC-hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHH--HHHHHHHHHHhcCCeEEEEEC
Q 005804 83 HRIALGVSGG-PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE--EANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 83 ~rVlVAVSGG-vDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~--Eae~V~~l~~~LGI~~~iv~~ 159 (676)
-|+..+|||| .||||.=+-..+-.+. .+.+... =-+|.||+++- -...+++... ++|+.+
T Consensus 69 PrLff~VsaGn~DSMV~hYTa~kk~R~-----~DaYtPG-------G~~g~RPDRAtiVY~n~ir~~f~--~vPiii--- 131 (302)
T PF08497_consen 69 PRLFFGVSAGNMDSMVNHYTASKKRRS-----DDAYTPG-------GKAGRRPDRATIVYTNLIREAFK--DVPIII--- 131 (302)
T ss_pred CcEEEEEccccHHHHHHhhcccccccc-----ccCCCCC-------CCCCCCCCchhhHHHHHHHHHCC--CCCEEE---
Confidence 6899999999 9999986654332111 1111111 13578887542 1223333222 566543
Q ss_pred ccccCCCCCCChHHH-HHHHHHHHHHH-----HHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCC
Q 005804 160 DWLDGRPKQGHLQEA-ARDMRYRLFQK-----VCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLG 220 (676)
Q Consensus 160 ~~~~~~~~~gn~E~~-AR~iRY~~L~~-----~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~G 220 (676)
|++|+- .|..-|++-.. +.-.-++|.|+.|-----..| +.-+|..|..+..
T Consensus 132 ---------GGIEASLRR~aHYDyWsdkvRrSIL~DskADlLvYGMGE~~i~e-iA~~L~~G~~~~~ 188 (302)
T PF08497_consen 132 ---------GGIEASLRRFAHYDYWSDKVRRSILFDSKADLLVYGMGEKPILE-IARRLAAGEPIED 188 (302)
T ss_pred ---------ecccccceehhhhhhhccccccceeecCCCCEEEecccHHHHHH-HHHHHHcCCChhH
Confidence 334443 33444554222 222346888888854332222 3345555554443
No 214
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.81 E-value=6e+02 Score=24.29 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECccccCCCC----CCChHHHHHHHHHHHHHHHHHHcCCCEEeec
Q 005804 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPK----QGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198 (676)
Q Consensus 137 ~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~----~gn~E~~AR~iRY~~L~~~A~e~g~~~LatG 198 (676)
..+.+.+++++++.|+.+............. ..+.+.........-..++|+.+|++.+.+.
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~ 91 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVH 91 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEE
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeec
Confidence 3578889999999999977766543322211 1122211111223335678899999988775
No 215
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=22.71 E-value=7.8e+02 Score=28.50 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=32.4
Q ss_pred EEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCC-CchhHHHHHHhhhhc
Q 005804 248 LLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRS-PLFVRNRIRMSLGDL 295 (676)
Q Consensus 248 ~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d-~~y~RNrIR~~L~~l 295 (676)
-|+-|-++.+|+||.++.++.. ++..+++..+ ..+.|..+|+.+...
T Consensus 149 HIV~PAlH~~reqIa~if~ekl-~~~~~~~~eel~~~aR~~lR~kfl~A 196 (459)
T COG1139 149 HIVAPALHKNREQIAEIFKEKL-GYEGEDTPEELTAAAREFLREKFLKA 196 (459)
T ss_pred ceeccccccCHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 5899999999999999887642 2222222222 268888888886543
No 216
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=22.42 E-value=4.8e+02 Score=28.17 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH
Q 005804 64 TKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143 (676)
Q Consensus 64 ~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V 143 (676)
.+....+.+.+...+++++++|+|...-++|.+++..-+. .. ..+++.+|.++. . +..
T Consensus 6 ~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~---~~-------------G~~~~~~~~~~~---~---~~~ 63 (436)
T TIGR01923 6 DCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACL---LL-------------GAEIAMLNTRLT---E---NER 63 (436)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHH---hc-------------CcEEEecCcCCC---H---HHH
Confidence 3445566677777889999999999999999888765442 22 245678888863 2 234
Q ss_pred HHHHHhcCCeEEEEE
Q 005804 144 SHRVSDMGIRCEIVR 158 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~ 158 (676)
...++..+..+.+.+
T Consensus 64 ~~~~~~~~~~~~i~~ 78 (436)
T TIGR01923 64 TNQLEDLDVQLLLTD 78 (436)
T ss_pred HHHHHhcCCCEEEEc
Confidence 556777888876654
No 217
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=21.91 E-value=8.2e+02 Score=24.54 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=36.8
Q ss_pred CeEEEEEcCChhHHHHHHHHHhh-hhCCCCCCCCCCCCCCcEEEEEEECC--CCCC-c-HHHHHHHHHHHHhcCCeEEEE
Q 005804 83 HRIALGVSGGPDSMALCVLTAGW-KTGGFNQNGEAGEFIDGLLAITVDHG--LREE-S-KEEANIVSHRVSDMGIRCEIV 157 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~-~~~g~~~~~~~~g~~~~L~aVhVDHG--LR~e-S-~~Eae~V~~l~~~LGI~~~iv 157 (676)
+...+|||||.-=..++..+... .+... .|. +++.+.+|-+ +-.+ . .......+.++++++++...+
T Consensus 19 ~~~~i~lsgG~T~~~~~~~l~~~~~~~~~-------~~~-~v~v~~~der~~v~~~~~~sn~~~~~~~l~~~~~~~~~~i 90 (232)
T cd01399 19 PPAVLGLATGSTPLGVYEELIELHKEGGL-------SFS-NVTTFNLDEYVGLPPDHPQSYHYFMRENLFDHIDIKPENI 90 (232)
T ss_pred CCcEEEEcCCCCHHHHHHHHHHHHHhcCC-------cHH-HeEEEeCceecCCCCCcchhHHHHHHHHhhccCCCCHHHE
Confidence 56799999996644444444322 11111 121 7888899954 4221 1 222233445778888875433
No 218
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=21.77 E-value=50 Score=34.92 Aligned_cols=37 Identities=5% Similarity=-0.038 Sum_probs=32.7
Q ss_pred CcccccccCCcceEeeeccCccccccccccCC--CeeEeec
Q 005804 3 RGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI--PFTRSQY 41 (676)
Q Consensus 3 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~q~ 41 (676)
|.-.+.+++++++|.|.++.+-+= |+...+ .+.|+||
T Consensus 177 HhQaIk~La~~L~V~A~a~DG~VE--Aie~~~~~fvlGVQW 215 (243)
T COG2071 177 HHQAIKKLAPGLVVEARAPDGTVE--AVEVKNDAFVLGVQW 215 (243)
T ss_pred HHHHHHHhCCCcEEEEECCCCcEE--EEEecCCceEEEEec
Confidence 677788999999999999999988 887774 7889999
No 219
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.53 E-value=3.6e+02 Score=27.72 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=50.6
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcccc
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLD 163 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~ 163 (676)
||+|-+||+---+-.+ +.. .+.+ .++.++.+|..|..- ..+.++|+++|||++...-. .
T Consensus 1 ki~vl~Sg~Gsn~~al--~~~-~~~~--------~l~~~i~~visn~~~--------~~~~~~A~~~gIp~~~~~~~--~ 59 (207)
T PLN02331 1 KLAVFVSGGGSNFRAI--HDA-CLDG--------RVNGDVVVVVTNKPG--------CGGAEYARENGIPVLVYPKT--K 59 (207)
T ss_pred CEEEEEeCCChhHHHH--HHH-HHcC--------CCCeEEEEEEEeCCC--------ChHHHHHHHhCCCEEEeccc--c
Confidence 5889999987655543 232 2332 123367777777642 22567889999999765321 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc
Q 005804 164 GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (676)
Q Consensus 164 ~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha 201 (676)
..+ +...-..+.+..++.+.|.++++...
T Consensus 60 ~~~---------~~~~~~~~~~~l~~~~~Dliv~agy~ 88 (207)
T PLN02331 60 GEP---------DGLSPDELVDALRGAGVDFVLLAGYL 88 (207)
T ss_pred CCC---------cccchHHHHHHHHhcCCCEEEEeCcc
Confidence 001 11111223445667789999987654
No 220
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.49 E-value=1.5e+02 Score=26.46 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=40.7
Q ss_pred eEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEE----CC-------CCCCcHHHHHHHHHHHHhcCC
Q 005804 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD----HG-------LREESKEEANIVSHRVSDMGI 152 (676)
Q Consensus 84 rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVD----HG-------LR~eS~~Eae~V~~l~~~LGI 152 (676)
+|+++..+|.=|+.++.-+.++..+. |++.++.+..+. .. +-|.-..+.+.+++.+...++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~ 72 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKR--------GIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGI 72 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHC--------CCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCC
Confidence 58999999998887776666655542 333233333321 00 012233455666766777888
Q ss_pred eEEEEECc
Q 005804 153 RCEIVRCD 160 (676)
Q Consensus 153 ~~~iv~~~ 160 (676)
|+..++..
T Consensus 73 pv~~I~~~ 80 (96)
T cd05564 73 PVAVIDMM 80 (96)
T ss_pred cEEEcChH
Confidence 88877643
No 221
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.44 E-value=1.5e+02 Score=33.45 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCC
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGG 109 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g 109 (676)
.+++|++|+||+..+.-...++..+.+.|
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~~g 30 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVRQG 30 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHhCC
Confidence 35899999999999988888888776554
No 222
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.22 E-value=1.1e+03 Score=25.61 Aligned_cols=10 Identities=40% Similarity=0.497 Sum_probs=8.5
Q ss_pred EEEEEEECCC
Q 005804 123 LLAITVDHGL 132 (676)
Q Consensus 123 L~aVhVDHGL 132 (676)
.+++|.|||.
T Consensus 76 PValHLDH~~ 85 (284)
T PRK12737 76 PLALHLDHHE 85 (284)
T ss_pred CEEEECCCCC
Confidence 4789999995
No 223
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=20.18 E-value=6.7e+02 Score=24.47 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=34.9
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC--cHHHHHHHHH-HHHhcCCe
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE--SKEEANIVSH-RVSDMGIR 153 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e--S~~Eae~V~~-l~~~LGI~ 153 (676)
++.+.+|+|||.-=..+...|.+....+ .|. +++.+.+|-.+-+. ...-..++++ +....+++
T Consensus 19 ~~~~~i~lsgGsTp~~~y~~L~~~~~~~--------~w~-~v~~f~~DEr~v~~~~~~Sn~~~~~~~ll~~~~i~ 84 (169)
T cd00458 19 KDDMVIGLGTGSTPAYFYKLLGEKLKRG--------EIS-DIVGFPTDERYVPLDSDQSNFRQAKLLAFEHDIIP 84 (169)
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhhhC--------Ccc-ceEEEECccccCCCCCchHHHHHHHHHhhccCCCC
Confidence 4689999999976666665554332211 121 67888888754321 1122334444 34445554
Done!