Query 005804
Match_columns 676
No_of_seqs 413 out of 2564
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:51:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2k_A TRNA(Ile)-lysidine synt 100.0 4.5E-45 1.5E-49 404.0 27.3 303 69-398 4-313 (464)
2 1wy5_A TILS, hypothetical UPF0 100.0 1.5E-44 5.3E-49 381.0 22.5 293 63-400 4-302 (317)
3 1ni5_A Putative cell cycle pro 100.0 2.6E-43 8.8E-48 386.9 28.2 288 79-402 10-302 (433)
4 3tqi_A GMP synthase [glutamine 100.0 3.9E-38 1.3E-42 353.7 14.3 241 1-280 144-408 (527)
5 2ywb_A GMP synthase [glutamine 100.0 1.8E-34 6.3E-39 322.1 19.4 229 1-272 124-373 (503)
6 3uow_A GMP synthetase; structu 100.0 1.9E-33 6.4E-38 317.5 18.5 238 1-278 169-435 (556)
7 1gpm_A GMP synthetase, XMP ami 100.0 8.8E-34 3E-38 318.2 15.6 228 1-272 141-395 (525)
8 2vxo_A GMP synthase [glutamine 100.0 2.6E-32 8.7E-37 315.0 17.2 236 1-272 155-434 (697)
9 3k32_A Uncharacterized protein 99.9 6.9E-28 2.4E-32 239.0 5.7 166 83-294 7-179 (203)
10 2dpl_A GMP synthetase, GMP syn 99.9 1.8E-24 6E-29 227.9 14.2 168 63-272 7-180 (308)
11 2der_A TRNA-specific 2-thiouri 99.9 1.6E-24 5.6E-29 234.4 9.4 173 80-283 15-212 (380)
12 2hma_A Probable tRNA (5-methyl 99.9 2.5E-24 8.5E-29 232.7 10.1 173 81-284 8-205 (376)
13 3bl5_A Queuosine biosynthesis 99.9 4.3E-23 1.5E-27 203.7 9.9 157 82-271 3-176 (219)
14 2pg3_A Queuosine biosynthesis 99.8 2.3E-21 8E-26 194.6 7.9 157 83-272 3-181 (232)
15 1sur_A PAPS reductase; assimil 99.8 4E-20 1.4E-24 183.8 12.5 148 82-273 44-201 (215)
16 2c5s_A THII, probable thiamine 99.8 5.2E-20 1.8E-24 201.0 12.9 159 79-278 184-352 (413)
17 2e18_A NH(3)-dependent NAD(+) 99.8 5.6E-19 1.9E-23 180.6 10.7 172 61-283 4-185 (257)
18 1kor_A Argininosuccinate synth 99.8 5.7E-19 1.9E-23 192.3 10.3 150 83-278 1-170 (400)
19 1xng_A NH(3)-dependent NAD(+) 99.8 5.3E-18 1.8E-22 174.6 14.0 174 63-283 5-188 (268)
20 3p52_A NH(3)-dependent NAD(+) 99.7 2E-18 6.8E-23 176.9 10.6 171 63-283 6-189 (249)
21 2nz2_A Argininosuccinate synth 99.7 2.8E-18 9.5E-23 187.6 11.8 160 82-289 5-188 (413)
22 1k92_A Argininosuccinate synth 99.7 6.9E-18 2.4E-22 185.9 14.2 151 79-274 7-184 (455)
23 1zun_A Sulfate adenylyltransfe 99.7 1.4E-17 4.8E-22 176.8 14.9 178 83-275 47-227 (325)
24 3fiu_A NH(3)-dependent NAD(+) 99.7 2.5E-17 8.6E-22 168.7 12.6 175 61-283 7-198 (249)
25 2o8v_A Phosphoadenosine phosph 99.7 1.8E-17 6.2E-22 169.4 11.5 148 82-273 45-202 (252)
26 2oq2_A Phosphoadenosine phosph 99.6 8.1E-16 2.8E-20 158.1 11.7 152 83-273 42-207 (261)
27 1vl2_A Argininosuccinate synth 99.6 2.6E-14 8.9E-19 156.1 15.8 146 82-274 14-183 (421)
28 1wxi_A NH(3)-dependent NAD(+) 99.5 2.2E-13 7.6E-18 141.4 12.9 188 49-280 11-213 (275)
29 2goy_A Adenosine phosphosulfat 99.5 2.6E-13 8.7E-18 140.5 13.1 152 83-273 55-216 (275)
30 1kqp_A NAD+ synthase, NH(3)-de 99.5 2.6E-13 9E-18 140.4 12.2 186 48-280 9-210 (271)
31 1vbk_A Hypothetical protein PH 99.4 1.3E-13 4.6E-18 145.1 8.0 122 80-270 177-307 (307)
32 3q4g_A NH(3)-dependent NAD(+) 99.4 8.7E-13 3E-17 137.4 11.4 191 45-280 8-222 (279)
33 2wsi_A FAD synthetase; transfe 99.4 4.1E-12 1.4E-16 133.7 16.3 153 82-273 53-214 (306)
34 3n05_A NH(3)-dependent NAD(+) 99.3 5.2E-12 1.8E-16 143.6 10.6 161 63-269 306-473 (590)
35 3dpi_A NAD+ synthetase; ssgcid 99.2 4E-11 1.4E-15 125.2 12.4 179 47-272 16-212 (285)
36 3ilv_A Glutamine-dependent NAD 98.9 5.4E-09 1.9E-13 119.9 10.8 172 71-280 295-518 (634)
37 3sdb_A Glutamine-dependent NAD 98.8 1.6E-08 5.6E-13 116.9 11.6 154 71-269 353-522 (680)
38 3rjz_A N-type ATP pyrophosphat 98.5 3.1E-07 1.1E-11 93.5 11.6 139 83-278 5-148 (237)
39 3fwk_A FMN adenylyltransferase 98.5 1.5E-06 5.1E-11 91.6 17.0 150 83-273 59-217 (308)
40 1ct9_A Asparagine synthetase B 98.3 4.8E-06 1.6E-10 94.1 13.7 139 61-205 206-354 (553)
41 1jgt_A Beta-lactam synthetase; 98.2 4.3E-06 1.5E-10 93.7 10.9 125 62-205 218-354 (513)
42 1q15_A CARA; CMPR, (2S,5S)-5-c 98.2 3.3E-06 1.1E-10 94.4 8.9 125 62-205 215-351 (503)
43 4f4h_A Glutamine dependent NAD 97.8 0.00019 6.4E-09 81.4 15.8 150 71-269 292-453 (565)
44 2a9v_A GMP synthase; structura 95.6 0.0017 6E-08 64.1 -0.3 39 1-41 139-178 (212)
45 3fij_A LIN1909 protein; 11172J 93.5 0.041 1.4E-06 55.7 3.7 39 1-41 176-217 (254)
46 3m3p_A Glutamine amido transfe 93.1 0.025 8.4E-07 57.7 1.2 38 1-41 138-175 (250)
47 1qdl_B Protein (anthranilate s 92.8 0.032 1.1E-06 54.0 1.6 40 1-42 134-175 (195)
48 1wl8_A GMP synthase [glutamine 92.5 0.063 2.1E-06 51.4 3.1 39 1-41 126-165 (189)
49 3hgm_A Universal stress protei 91.6 0.26 9E-06 43.8 6.0 94 83-202 3-121 (147)
50 2v4u_A CTP synthase 2; pyrimid 91.6 0.044 1.5E-06 56.8 0.9 35 5-41 214-252 (289)
51 1i1q_B Anthranilate synthase c 90.6 0.12 4.1E-06 49.7 2.8 38 1-41 130-168 (192)
52 2vpi_A GMP synthase; guanine m 90.5 0.1 3.6E-06 51.7 2.4 38 1-41 150-188 (218)
53 3l7n_A Putative uncharacterize 90.3 0.097 3.3E-06 52.2 1.9 38 1-41 141-178 (236)
54 3fdx_A Putative filament prote 90.1 0.18 6E-06 44.8 3.3 96 83-201 2-116 (143)
55 1tq8_A Hypothetical protein RV 89.9 3.2 0.00011 38.2 11.9 102 79-207 14-135 (163)
56 3dlo_A Universal stress protei 88.8 1.6 5.4E-05 39.9 8.9 96 83-202 25-128 (155)
57 3loq_A Universal stress protei 88.4 4.2 0.00014 40.6 12.4 101 80-208 168-268 (294)
58 3idf_A USP-like protein; unive 88.3 2.5 8.5E-05 37.0 9.5 93 83-203 2-113 (138)
59 1jmv_A USPA, universal stress 87.2 4.1 0.00014 35.7 10.3 98 83-206 3-116 (141)
60 1o1y_A Conserved hypothetical 86.8 0.33 1.1E-05 48.6 3.0 36 2-41 149-184 (239)
61 3s3t_A Nucleotide-binding prot 86.0 1.5 5.1E-05 38.8 6.7 94 83-202 6-119 (146)
62 3tnj_A Universal stress protei 85.9 5.3 0.00018 35.4 10.4 99 82-206 6-124 (150)
63 2w7t_A CTP synthetase, putativ 85.4 0.28 9.5E-06 50.3 1.8 35 5-41 190-232 (273)
64 2z08_A Universal stress protei 84.8 4.6 0.00016 35.3 9.4 93 83-201 3-109 (137)
65 3r75_A Anthranilate/para-amino 84.6 0.45 1.5E-05 54.8 3.2 37 2-41 576-612 (645)
66 1mjh_A Protein (ATP-binding do 83.6 6.3 0.00021 35.4 9.9 95 82-202 5-131 (162)
67 2dum_A Hypothetical protein PH 83.6 3.9 0.00013 37.3 8.6 94 83-202 6-128 (170)
68 3fg9_A Protein of universal st 81.6 6.9 0.00024 35.0 9.3 97 82-203 15-131 (156)
69 2gm3_A Unknown protein; AT3G01 77.4 16 0.00056 33.2 10.7 99 82-203 5-136 (175)
70 3d54_D Phosphoribosylformylgly 76.8 1.6 5.4E-05 42.0 3.6 39 1-41 140-185 (213)
71 3n0v_A Formyltetrahydrofolate 76.4 36 0.0012 35.1 13.8 117 60-209 61-184 (286)
72 2abw_A PDX2 protein, glutamina 74.5 1.1 3.7E-05 44.0 1.7 37 2-41 153-195 (227)
73 3mt0_A Uncharacterized protein 73.6 14 0.00047 36.8 9.7 95 82-203 7-101 (290)
74 3mt0_A Uncharacterized protein 73.2 27 0.00092 34.6 11.8 98 81-203 133-249 (290)
75 1a9x_B Carbamoyl phosphate syn 73.0 1.1 3.9E-05 48.3 1.5 38 2-41 310-351 (379)
76 3lou_A Formyltetrahydrofolate 71.1 58 0.002 33.7 13.9 116 61-209 67-189 (292)
77 1gpw_B Amidotransferase HISH; 70.7 0.87 3E-05 43.7 0.0 37 2-42 140-178 (201)
78 1l9x_A Gamma-glutamyl hydrolas 70.4 0.92 3.1E-05 47.4 0.1 40 2-41 191-240 (315)
79 3o1l_A Formyltetrahydrofolate 70.1 37 0.0013 35.3 12.2 109 61-202 77-192 (302)
80 3olq_A Universal stress protei 66.6 49 0.0017 32.9 12.1 100 81-206 155-281 (319)
81 1q7r_A Predicted amidotransfer 62.6 3.2 0.00011 40.6 2.2 36 2-41 156-191 (219)
82 2nv0_A Glutamine amidotransfer 61.4 3.4 0.00012 39.3 2.2 37 2-42 134-170 (196)
83 3loq_A Universal stress protei 54.5 21 0.00073 35.4 6.8 98 83-206 23-138 (294)
84 3hj7_A TRNA(Ile)-lysidine synt 54.0 9.5 0.00032 35.5 3.7 33 641-674 75-107 (142)
85 2nly_A BH1492 protein, diverge 53.6 53 0.0018 33.2 9.5 113 59-203 78-196 (245)
86 1q77_A Hypothetical protein AQ 53.1 52 0.0018 28.4 8.3 37 83-129 5-41 (138)
87 3e15_A Glucose-6-phosphate 1-d 49.8 59 0.002 34.0 9.4 103 79-199 56-166 (312)
88 2qv5_A AGR_C_5032P, uncharacte 49.6 51 0.0017 33.6 8.7 118 59-209 105-228 (261)
89 4gud_A Imidazole glycerol phos 48.9 4.1 0.00014 39.2 0.4 36 2-41 149-184 (211)
90 3olq_A Universal stress protei 47.2 43 0.0015 33.3 7.7 96 83-203 8-123 (319)
91 2vdj_A Homoserine O-succinyltr 45.5 7.3 0.00025 40.6 1.7 36 3-41 198-234 (301)
92 3obi_A Formyltetrahydrofolate 42.8 63 0.0021 33.3 8.2 116 61-209 61-184 (288)
93 3p9x_A Phosphoribosylglycinami 41.1 2.3E+02 0.0078 27.8 11.6 90 83-202 3-92 (211)
94 3ab8_A Putative uncharacterize 40.1 38 0.0013 32.9 5.9 37 83-129 1-37 (268)
95 3cis_A Uncharacterized protein 39.9 68 0.0023 31.9 7.9 39 82-130 171-209 (309)
96 3nrb_A Formyltetrahydrofolate 39.5 52 0.0018 33.9 6.9 114 63-208 62-182 (287)
97 3zqu_A Probable aromatic acid 39.2 37 0.0013 33.5 5.6 30 81-110 3-32 (209)
98 2h2w_A Homoserine O-succinyltr 37.6 16 0.00056 38.3 2.8 36 3-41 209-245 (312)
99 3da8_A Probable 5'-phosphoribo 37.4 1.8E+02 0.0063 28.5 10.3 88 83-202 13-100 (215)
100 3av3_A Phosphoribosylglycinami 37.1 2E+02 0.0068 28.0 10.5 90 83-202 4-93 (212)
101 1ka9_H Imidazole glycerol phos 35.4 8.9 0.0003 36.6 0.4 36 2-42 141-178 (200)
102 1ne7_A Glucosamine-6-phosphate 34.7 2.2E+02 0.0075 28.8 10.8 102 82-200 32-139 (289)
103 2ywr_A Phosphoribosylglycinami 33.1 3.2E+02 0.011 26.5 11.3 89 83-201 2-90 (216)
104 2ejb_A Probable aromatic acid 31.6 58 0.002 31.5 5.5 27 83-109 2-28 (189)
105 3cis_A Uncharacterized protein 29.6 79 0.0027 31.5 6.3 39 82-130 19-57 (309)
106 3qjg_A Epidermin biosynthesis 26.7 55 0.0019 31.3 4.3 27 83-109 6-32 (175)
107 1g63_A Epidermin modifying enz 26.6 47 0.0016 31.9 3.8 27 83-109 3-29 (181)
108 3ab8_A Putative uncharacterize 25.8 1.1E+02 0.0039 29.4 6.6 90 81-199 153-242 (268)
109 3auf_A Glycinamide ribonucleot 24.8 2.5E+02 0.0084 27.8 8.8 89 83-201 23-111 (229)
110 3nbm_A PTS system, lactose-spe 24.0 1.6E+02 0.0056 25.7 6.6 69 81-159 5-86 (108)
111 3jy6_A Transcriptional regulat 23.7 1.5E+02 0.0053 28.4 7.1 18 183-200 29-46 (276)
112 1s1m_A CTP synthase; CTP synth 23.6 26 0.00088 39.5 1.5 29 11-41 483-514 (545)
113 3mcu_A Dipicolinate synthase, 23.4 58 0.002 32.1 3.8 28 82-109 5-33 (207)
114 3hn6_A Glucosamine-6-phosphate 23.3 3.7E+02 0.013 27.4 10.1 101 82-199 53-159 (289)
115 1p3y_1 MRSD protein; flavoprot 23.1 51 0.0018 32.0 3.4 28 82-109 8-35 (194)
116 3lqk_A Dipicolinate synthase s 22.9 51 0.0017 32.2 3.3 29 81-109 6-35 (201)
117 1vco_A CTP synthetase; tetrame 22.1 17 0.00058 41.0 -0.3 31 9-41 482-521 (550)
118 1qzu_A Hypothetical protein MD 21.3 51 0.0018 32.3 3.0 27 81-107 18-44 (206)
119 3kcq_A Phosphoribosylglycinami 21.1 2E+02 0.0069 28.2 7.3 93 81-208 7-99 (215)
120 2ri0_A Glucosamine-6-phosphate 20.7 5E+02 0.017 24.8 10.1 93 86-200 31-127 (234)
No 1
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=100.00 E-value=4.5e-45 Score=403.95 Aligned_cols=303 Identities=24% Similarity=0.311 Sum_probs=244.4
Q ss_pred HHHHHHHHc-CCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC-CCcHHHHHHHHHH
Q 005804 69 AFSRRMAMA-GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EESKEEANIVSHR 146 (676)
Q Consensus 69 ~~~~~i~~~-~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR-~eS~~Eae~V~~l 146 (676)
.|.+.+.+. ++.++++|+||||||+||+||++++.++.... | .++.++|||||+| ++|++|+++|+++
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~--------~--~~v~avhvdhglrg~~s~~~~~~v~~~ 73 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW--------K--LQVIAAHVDHMFRGRESEEEMEFVKRF 73 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT--------T--CBCEEEEEECTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc--------C--CeEEEEEEECCCCccccHHHHHHHHHH
Confidence 456666665 47889999999999999999999998876431 1 2789999999999 7788999999999
Q ss_pred HHhcCCeEEEEECccccCC-CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccc
Q 005804 147 VSDMGIRCEIVRCDWLDGR-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMA 225 (676)
Q Consensus 147 ~~~LGI~~~iv~~~~~~~~-~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~ 225 (676)
|+++|||+++++++..... ....++|+.||.+||++|.++|+++|+++|+||||+|||+||+||++.||+|+.||+||+
T Consensus 74 ~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~ 153 (464)
T 3a2k_A 74 CVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIP 153 (464)
T ss_dssp HHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSC
T ss_pred HHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcccccCCC
Confidence 9999999999988653211 223478999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhhhhcc---CCCHHH
Q 005804 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKS 302 (676)
Q Consensus 226 ~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~~l~---~~~f~~ 302 (676)
+.+.+ .+..++|||++++|+||++||+++|++|++||||++..|.||+||+.+.|.. +|.+..
T Consensus 154 ~~~~~--------------~~~~iiRPLl~~~k~eI~~ya~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~ 219 (464)
T 3a2k_A 154 VKRPF--------------HGGYLIRPFLAVSRAEIEAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHE 219 (464)
T ss_dssp SEEEC--------------SSSEEECGGGGSCHHHHHHHHHHTCCSSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHH
T ss_pred ccccC--------------CCCEEECCCccCcHHHHHHHHHHcCCCeEECCCCCCccchHHHHHHHHHHHHHHHCchHHH
Confidence 76532 2347999999999999999999999999999999999999999999988765 688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceeEEeccccCCcchHHHHHHHHHHHHHHHhhCC-cccccCchHHHH
Q 005804 303 ELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQR-QRPVRGSTSKLL 381 (676)
Q Consensus 303 ~L~~~a~~~~~~~~~Ld~~~~~ll~~~v~~~~~g~~~ld~~~l~~~~i~~i~l~r~L~~~l~~is~~-~~p~r~~~l~~L 381 (676)
++.++++.++++.++++..+...+.+.+.... +...++...|... .....++++...+...++. ..++....+..+
T Consensus 220 ~l~r~a~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i 296 (464)
T 3a2k_A 220 RFQQYSEMMAEDEQFLEELAADALNKVMEKQH-RDAALSIGPFLEL--PRPLQRRVLQLLLLRLYGGVPPTLTSVHIGHI 296 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTEECSS-SSCEECHHHHHHS--CHHHHHHHHHHHHHHTTSCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CcEEEEHHHHhcC--CHHHHHHHHHHHHHHccCCCCCCCCHHHHHHH
Confidence 99999999999999999998887776542222 4456777665322 2234567777777765542 345566667777
Q ss_pred HHHHhcCCCCCeeeecc
Q 005804 382 LHYIRTFPCKTSLTAAG 398 (676)
Q Consensus 382 l~~l~~~~~~~~~Tl~G 398 (676)
++.+........+.++|
T Consensus 297 ~~~~~~~~~~~~~~l~~ 313 (464)
T 3a2k_A 297 LMLCERGRPSGMIDLPK 313 (464)
T ss_dssp HHHHHCSCSEEEEECST
T ss_pred HHHHhcCCCCcEEEeCC
Confidence 77776533334566654
No 2
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=100.00 E-value=1.5e-44 Score=380.95 Aligned_cols=293 Identities=18% Similarity=0.219 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCc-EEEEEEECCCCCCcHHHH
Q 005804 63 MTKYREAFSRRMAMA-GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDG-LLAITVDHGLREESKEEA 140 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~-~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~-L~aVhVDHGLR~eS~~Ea 140 (676)
+..+.+.|.+.+... .+.++++|+||+|||+||+||++++.++... .| .+ +.++|||||+|+++.+|+
T Consensus 4 ~~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~--------~g--~~~v~av~vd~g~r~~s~~~~ 73 (317)
T 1wy5_A 4 ESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY--------FS--LKEVALAHFNHMLRESAERDE 73 (317)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT--------TT--CSEEEEEEEECCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH--------cC--CCEEEEEEEECCCCcccHHHH
Confidence 556777888888775 4788999999999999999999999876432 12 37 999999999998889999
Q ss_pred HHHHHHHHhcCCeEEEEECccccCC-CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCC
Q 005804 141 NIVSHRVSDMGIRCEIVRCDWLDGR-PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL 219 (676)
Q Consensus 141 e~V~~l~~~LGI~~~iv~~~~~~~~-~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~ 219 (676)
++|+++|+++|||++++++++.... ....++|..||.+||.+|.++|+++|+++|+||||+||++||++|++.||+|..
T Consensus 74 ~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~~ 153 (317)
T 1wy5_A 74 EFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLLFFTRGTGLD 153 (317)
T ss_dssp HHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHHHHHHHHHHHhCCCcc
Confidence 9999999999999999987653211 123479999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhhhhcc---
Q 005804 220 GLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS--- 296 (676)
Q Consensus 220 GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~~l~--- 296 (676)
||+||++.. + .++|||++++|+||++|++++|+||++||||.++.|.||+||+.+.|..
T Consensus 154 gl~~~~~~~----------------~--~iirPLl~~~k~eI~~~~~~~gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~ 215 (317)
T 1wy5_A 154 GLIGFLPKE----------------E--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRVIPELKRI 215 (317)
T ss_dssp HHHCSCSEE----------------T--TEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGTCCHHHHHHHHTHHHHHHHH
T ss_pred cccCCCCCC----------------C--eEECCCccCCHHHHHHHHHHcCCCeeECCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999998631 1 5999999999999999999999999999999999999999999887754
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCceeEEeccccCCcchHHHHHHHHHHHHHHHhhCCcccccCc
Q 005804 297 SCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGS 376 (676)
Q Consensus 297 ~~~f~~~L~~~a~~~~~~~~~Ld~~~~~ll~~~v~~~~~g~~~ld~~~l~~~~i~~i~l~r~L~~~l~~is~~~~p~r~~ 376 (676)
+|.+...+.++++.++++.++++..+...+.+.. . ...++...|.... ..+.++++...+... ...
T Consensus 216 ~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~---~--~~~l~~~~l~~~~--~~~~~~~l~~~l~~~-------~~~ 281 (317)
T 1wy5_A 216 NENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVK---K--GNCLDVKKLKEKP--LALQRRVIRKFIGEK-------DYE 281 (317)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE---E--TTEECHHHHTTSC--HHHHHHHHHHHHTCC-------CHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--CcEEcHHHHhcCC--HHHHHHHHHHHHHHC-------CHH
Confidence 6889999999999999999999998887776532 1 2346766664322 233445555544321 333
Q ss_pred hHHHHHHHHhcCCCCCeeeecceE
Q 005804 377 TSKLLLHYIRTFPCKTSLTAAGCY 400 (676)
Q Consensus 377 ~l~~Ll~~l~~~~~~~~~Tl~Gc~ 400 (676)
.+..+++.+.. ++.++++|++
T Consensus 282 ~~~~~~~~~~~---~~~~~l~~~~ 302 (317)
T 1wy5_A 282 KVELVRSLLEK---GGEVNLGKGK 302 (317)
T ss_dssp HHHHHHGGGTS---CCEEESSSEE
T ss_pred HHHHHHHHHhc---CCEEEcCCCE
Confidence 45555544444 4578998876
No 3
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=100.00 E-value=2.6e-43 Score=386.94 Aligned_cols=288 Identities=22% Similarity=0.292 Sum_probs=232.7
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEE
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVR 158 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~ 158 (676)
+.++++|+||||||+||+||++++.++.... .| +++.++|||||+|++|++|+++|+++|+++|||+++++
T Consensus 10 l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-------~g--~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-------PG--VALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp HTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-------TT--CEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-------CC--CeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 4567999999999999999999998875431 12 27999999999999899999999999999999999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccc
Q 005804 159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSC 238 (676)
Q Consensus 159 ~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~ 238 (676)
++.. ....++|+.||.+||.+|.++|+ ++++|+||||+|||+||++|++.||+|+.||+||++.+.+
T Consensus 81 ~~~~---~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD~aEt~L~~l~RG~g~~gL~gm~~~~~~-------- 147 (433)
T 1ni5_A 81 VQLA---QEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEF-------- 147 (433)
T ss_dssp CCCC---CSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHHHHHHHHHHHTTTCCTTGGGCCCSEEEE--------
T ss_pred ecCC---CCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchHHHHHHHHHHHcCCCcccccCCCCcccc--------
Confidence 7653 22347899999999999999997 4899999999999999999999999999999999975421
Q ss_pred cccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhHHHHHHhhhhcc---CCCHHHHHHHHHHHHHHHH
Q 005804 239 HDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLS---SCSFKSELQAVISACRRTR 315 (676)
Q Consensus 239 ~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR~~L~~l~---~~~f~~~L~~~a~~~~~~~ 315 (676)
+++.++|||++++|+||++||+++|++|++||||+++.|.||+||+.+.|.. +|.+...+.++++.++++.
T Consensus 148 ------~~~~iiRPLl~~~k~eI~~y~~~~gl~~~~D~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~~~~~~~~~ 221 (433)
T 1ni5_A 148 ------AGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQE 221 (433)
T ss_dssp ------TTEEEECGGGSCCHHHHHHHHHHTTCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred ------CCceEEccCccCCHHHHHHHHHHcCCCeEECCCCCCcccchHHHHHHHHHHHHHHCchHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999988865 5789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCceeEEeccccCCcchHHHHHHHHHHHHHHHhhCCcccccCchHHHHHHHHhcCC--CCCe
Q 005804 316 SYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFP--CKTS 393 (676)
Q Consensus 316 ~~Ld~~~~~ll~~~v~~~~~g~~~ld~~~l~~~~i~~i~l~r~L~~~l~~is~~~~p~r~~~l~~Ll~~l~~~~--~~~~ 393 (676)
++++..+...+.+.+. ..+ .++...|.... ....++++...+...+. .++....+..+++.+.... ....
T Consensus 222 ~~l~~~~~~~~~~~~~--~~~--~l~~~~l~~~~--~~~~~~~l~~~l~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~ 293 (433)
T 1ni5_A 222 SLLDELLADDLAHCQS--PQG--TLQIVPMLAMS--DARRAAIIRRWLAGQNA--PMPSRDALVRIWQEVALAREDASPC 293 (433)
T ss_dssp HHHHHHHHHHHHHHBC--SSS--CEESGGGTTSC--HHHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHTTTSCGGGCCE
T ss_pred HHHHHHHHHHHHHhhc--cCC--eEcHHHHhcCC--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCCCCCce
Confidence 9999988887776542 223 46767665432 23345666665554332 3455555666666554322 1246
Q ss_pred eeecceEEe
Q 005804 394 LTAAGCYLC 402 (676)
Q Consensus 394 ~Tl~Gc~~~ 402 (676)
++++|+.+.
T Consensus 294 ~~l~~~~~~ 302 (433)
T 1ni5_A 294 LRLGAFEIR 302 (433)
T ss_dssp EEETTEEEE
T ss_pred EEcCCEEEE
Confidence 889998763
No 4
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=100.00 E-value=3.9e-38 Score=353.69 Aligned_cols=241 Identities=17% Similarity=0.154 Sum_probs=184.3
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhhhhccCCCCCCCccccHHH
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTK 65 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~ 65 (676)
|+|||.|.++|++|.++|+|++++++ ++.+++ ++||+|| +||++.+|+|+++|+ +...+++
T Consensus 144 ~~H~d~v~~lp~g~~v~A~s~~~~i~--ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~~i~~~~~~w~--~~~~~~~ 219 (527)
T 3tqi_A 144 MSHGDIVSELPPGFEATACTDNSPLA--AMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWT--TKHIIED 219 (527)
T ss_dssp EESSSCBCSCCTTCEEEEEETTEEEE--EEECSSSCEEEESBCSSSTTSTTHHHHHHHHHHTTSCCCCCCC--SHHHHHH
T ss_pred EEcccchhccCCCCEEEEEeCCCcEE--EEEcCCCCEEEEEeccccccccccchhhhhhhhhcccccchhh--HHHHHHH
Confidence 79999999999999999999999999 999866 9999999 899999999999999 6666777
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~ 145 (676)
.++.+++.++. ++|+||+|||+||+++|+++++..+. +++|+|||||++. .+|.+.+.+
T Consensus 220 ~i~~i~~~v~~------~kvlvalSGGvDSsvla~ll~~~~G~-------------~v~av~vd~g~~~--~~e~~~~~~ 278 (527)
T 3tqi_A 220 SIRDIQEKVGK------EQVIVGLSGGVDSAVTATLVHKAIGD-------------QLVCVLVDTGLLR--LNEVDEVLN 278 (527)
T ss_dssp HHHHHHHHHTT------SCEEEECTTTHHHHHHHHHHHHHHGG-------------GEEEEEECCSCSC--TTHHHHHHH
T ss_pred HHHHHHHhcCC------CeEEEEEecCcCHHHHHHHHHHHhCC-------------eEEEEEeccCCCC--hhHHHHHHH
Confidence 77777777654 88999999999999999999876432 7999999999973 445666665
Q ss_pred -HHHhcCCeEEEEECccccCCCCC--CChHHH---HHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCC
Q 005804 146 -RVSDMGIRCEIVRCDWLDGRPKQ--GHLQEA---ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVL 219 (676)
Q Consensus 146 -l~~~LGI~~~iv~~~~~~~~~~~--gn~E~~---AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~ 219 (676)
+|+++||++++++++..+..... .+++.. +++.+|++|.++|+++|+++|++|||+||++||++||..++.
T Consensus 279 ~~a~~lgi~~~vv~~~~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~Et~~~~~g~~~--- 355 (527)
T 3tqi_A 279 VFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGH--- 355 (527)
T ss_dssp HHTTSSCCEEEEECCHHHHHSSSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHHCC------------
T ss_pred HHHHHcCCcEEEEeChHHHHHhhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccccccccCCChhh---
Confidence 99999999999998765433222 355554 345688899999999999999999999999999998732222
Q ss_pred CcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce---eeCCCCCC
Q 005804 220 GLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW---VEDPTNRS 280 (676)
Q Consensus 220 GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~---veDpSN~d 280 (676)
.+.+++++.++ +....+.++|||++++|+||++|++++|+|| ..+|++..
T Consensus 356 ~ik~~~~l~gl-----------~~~~~~~iirPL~~l~K~EIr~~a~~lGlp~~~v~~~P~p~~ 408 (527)
T 3tqi_A 356 IIKTHHNVGGL-----------PLNMELKLIEPLRELFKDEVRKLGLELGLPADLIYRHPFPGP 408 (527)
T ss_dssp ----------------------------CEECTTTTCCHHHHHHHHHHHTCCHHHHTCCCCCTT
T ss_pred eeeeecccccC-----------cccccCccccchhcCCHHHHHHHHHHcCCChhhhccCCCCCC
Confidence 23333333222 1233467999999999999999999999999 77786543
No 5
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=100.00 E-value=1.8e-34 Score=322.14 Aligned_cols=229 Identities=17% Similarity=0.104 Sum_probs=176.8
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhhhhccCCCCCCCccccHHH
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTK 65 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~ 65 (676)
|+|||.|..+|++|.++|+|++++++ ++.+++ ++||+|| +||+ .+|+|+++|+ +...+++
T Consensus 124 ~~H~~~v~~lp~g~~v~A~s~~~~i~--ai~~~~~~~~gvQFHPE~~~~~~g~~ll~~F~-~~~~~~~~~~--~~~~~~~ 198 (503)
T 2ywb_A 124 MSHQDAVTAPPPGWRVVAETEENPVA--AIASPDGRAYGVQFHPEVAHTPKGMQILENFL-ELAGVKRDWT--PEHVLEE 198 (503)
T ss_dssp EECSCEEEECCTTCEEEEECSSCSCS--EEECTTSSEEEESBCTTSTTSTTHHHHHHHHH-HHTTCCCCCC--HHHHHHH
T ss_pred EECCCccccCCCCCEEEEEECCCCEE--EEEeCCCCEEEEecCCCcccccccHHHHHHHH-HHhhhhcccc--chhhhHH
Confidence 79999999999999999999999999 999866 9999999 8999 9999999999 5555555
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~ 145 (676)
..+.+++.++. ++|+||+|||+||+++++++++. |. +++|+|||||++. .+|.+.+++
T Consensus 199 ~i~~ir~~~~~------~kvvvalSGGvDSsvla~ll~~~---g~-----------~v~av~vd~g~~~--~~e~~~v~~ 256 (503)
T 2ywb_A 199 LLREVRERAGK------DRVLLAVSGGVDSSTLALLLAKA---GV-----------DHLAVFVDHGLLR--LGEREEVEG 256 (503)
T ss_dssp HHHHHHHHHTT------SEEEEEECSSHHHHHHHHHHHHH---TC-----------EEEEEEEECSCSC--TTHHHHHHH
T ss_pred HHHhhhhhccC------ccEEEEecCCcchHHHHHHHHHc---CC-----------eEEEEEEeCCCCC--hHHHHHHHH
Confidence 55666665543 79999999999999999999875 32 7999999999853 457888999
Q ss_pred HHHhcCCeEEEEECccccCC--CCCCChHHHH---HHHHHHHHHHHHHHc-CCCEEeeccccchhHHHHHHHhhcCCCCC
Q 005804 146 RVSDMGIRCEIVRCDWLDGR--PKQGHLQEAA---RDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSGVL 219 (676)
Q Consensus 146 l~~~LGI~~~iv~~~~~~~~--~~~gn~E~~A---R~iRY~~L~~~A~e~-g~~~LatGHhaDDqaET~LmrL~RGsG~~ 219 (676)
+|+++|+++++++++..+.. ....+++..+ ...|+++|.++|+++ |+++|++|||+||++||.++ ++ ..
T Consensus 257 ~~~~lgi~~~vv~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~~Et~~~---g~--~~ 331 (503)
T 2ywb_A 257 ALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGG---HG--AA 331 (503)
T ss_dssp HHHHTTCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC-------------
T ss_pred HHHHhCCCEEEEECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccchhhccC---Cc--cc
Confidence 99999999999998764321 1122455433 345889999999999 99999999999999999654 22 22
Q ss_pred CcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 220 GLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 220 GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
.+++++++.++ +...++.++|||++++|+||++|++++|+||
T Consensus 332 ~iks~~~l~~l-----------~~~~~~~ii~PL~~l~K~EVr~~a~~~glp~ 373 (503)
T 2ywb_A 332 KIKSHHNVGGL-----------PEDLEFELLEPFRLLFKDEVRELALLLGLPD 373 (503)
T ss_dssp ---------CC-----------CSSCCCEEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred ccccccccccc-----------cccccCceEehhhcCCHHHHHHHHHHcCCCh
Confidence 23333332221 2234578999999999999999999999997
No 6
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-33 Score=317.54 Aligned_cols=238 Identities=19% Similarity=0.136 Sum_probs=180.4
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhhhhccCCCCCCCccccHHH
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTK 65 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~ 65 (676)
|+|||.|..+|++|.++|+|++++++ ++.+++ ++||+|| +||++.+|+|+++|+ ++.
T Consensus 169 ~~H~d~V~~lp~g~~vlA~s~~~~i~--ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl~~i~g~~~~~~------~~~ 240 (556)
T 3uow_A 169 MNHNDEVTKIPENFYLVSSSENCLIC--SIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFD------PIR 240 (556)
T ss_dssp EEEEEEEEECCTTCEEEEEETTEEEE--EEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCC-CC------HHH
T ss_pred EEccceeeccCCCcEEEEEeCCCCEE--EEEECCCCEEEEEcCCCCCccccchHHHHHHHHHhhccccccc------ccc
Confidence 79999999999999999999999999 998865 9999999 899999999999999 666
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHH-H
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV-S 144 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V-~ 144 (676)
+++...+.+++. .++++|+||+|||+||+++|+|+++..+. +++|+|||||++. ..|.+.+ +
T Consensus 241 ~~~~~i~~ir~~--g~~~~vvvalSGGvDSsv~a~ll~~~~G~-------------~v~~v~vd~g~~~--~~e~~~~~~ 303 (556)
T 3uow_A 241 YHELELKNIEKY--KHDHYVIAAMSGGIDSTVAAAYTHKIFKE-------------RFFGIFIDNGLLR--KNEAENVYT 303 (556)
T ss_dssp HHHHHHHHHGGG--TTTCEEEEECCSSHHHHHHHHHHHHHHGG-------------GEEEEEEECSCSC--TTHHHHHHH
T ss_pred ccccceeeeeec--CCCceEEEEcccCCCHHHHHHHHHHHhCC-------------eEEEEEEecCCCC--hHHHHHHHH
Confidence 777766667665 44789999999999999999999876543 7999999999974 3355555 5
Q ss_pred HHHHhc-CCeEEEEECccccCCCC--CCChHHHHHH---HHHHHHHHHHHHcCC----CEEeeccccchhHHHHHHHhhc
Q 005804 145 HRVSDM-GIRCEIVRCDWLDGRPK--QGHLQEAARD---MRYRLFQKVCIQHQI----GVLLIAHHADDQAELFILRLSR 214 (676)
Q Consensus 145 ~l~~~L-GI~~~iv~~~~~~~~~~--~gn~E~~AR~---iRY~~L~~~A~e~g~----~~LatGHhaDDqaET~LmrL~R 214 (676)
.+|+.+ ||++++++++..+.... ..+++.+++. .++++|.++|+++|. ++|++||++||++|++.++
T Consensus 304 ~~~~~l~gi~~~~vd~~~~f~~~l~g~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ies~~~~--- 380 (556)
T 3uow_A 304 FLKSTFPDMNITKIDASENFLSNLQGVTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDIIESKCSK--- 380 (556)
T ss_dssp HHHHHCTTSEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHHHHHSCC----
T ss_pred HHHHhcCCCCeEEeccHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHHHhhcccc---
Confidence 689999 99999999876543222 2245554333 378889999999986 8999999999999987421
Q ss_pred CCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc---eeeCCCC
Q 005804 215 NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD---WVEDPTN 278 (676)
Q Consensus 215 GsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp---~veDpSN 278 (676)
| ....+++++++.++ +....+.+++||++++|+||+++++++|+| ....|+.
T Consensus 381 g-~~~~iks~~n~~gl-----------~~~~~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~P~p 435 (556)
T 3uow_A 381 N-LSDTIKTHHNVGGL-----------PKNLKFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFP 435 (556)
T ss_dssp ------------------------------CCCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCCCCC
T ss_pred c-ccceeccccccccc-----------ccccccceEeecccCcHHHHHHHHHHcCCCHHHhCCCCCC
Confidence 2 13345666655433 234567899999999999999999999999 3444544
No 7
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=100.00 E-value=8.8e-34 Score=318.23 Aligned_cols=228 Identities=19% Similarity=0.190 Sum_probs=177.3
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhhhhccCCCCCCCccccHHH
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTK 65 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~ 65 (676)
|+|||.|..+|++|.++|+|++++++ ++.+++ ++||+|| +||+..+|+|+++|+ +...+++
T Consensus 141 ~~H~~~V~~lp~g~~v~A~s~~~~i~--ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~~i~~~~~~~~--~~~~~~~ 216 (525)
T 1gpm_A 141 MSHGDKVTAIPSDFITVASTESCPFA--IMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWT--PAKIIDD 216 (525)
T ss_dssp EEECSEEEECCTTCEEEEECSSCSCS--EEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCCCCC--HHHHHHH
T ss_pred EEccceeeeCCCCCEEEEECCCCCEE--EEEECCCCEEEEecCCCCCcchhHHHHHHHHHHhhhhccccch--HHHHHHh
Confidence 78999999999999999999999999 999866 9999999 899999999999999 5555555
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~ 145 (676)
..+.+++.++. ++|+||+|||+||+++++++++..+. +++|+|||||++.. .|.+.+.+
T Consensus 217 ~~~~ir~~v~~------~~vvvalSGGvDSsv~a~ll~~a~G~-------------~v~av~v~~g~~~~--~e~~~~~~ 275 (525)
T 1gpm_A 217 AVARIREQVGD------DKVILGLSGGVDSSVTAMLLHRAIGK-------------NLTCVFVDNGLLRL--NEAEQVLD 275 (525)
T ss_dssp HHHHHHHHHTT------CEEEEECCSSHHHHHHHHHHHHHHGG-------------GEEEEEEECSCSCT--THHHHHHH
T ss_pred hhhhhhhhhcc------cceEEEecCCCCHHHHHHHHHHHhCC-------------CEEEEEEeCCCCCc--hHHHHHHH
Confidence 56666666544 79999999999999999999875432 79999999999643 45666766
Q ss_pred -HHHhcCCeEEEEECccccCC--CCCCChHHH---HHHHHHHHHHHHHHHc-CCCEEeeccccchhHHHHHHH-hhcCCC
Q 005804 146 -RVSDMGIRCEIVRCDWLDGR--PKQGHLQEA---ARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILR-LSRNSG 217 (676)
Q Consensus 146 -l~~~LGI~~~iv~~~~~~~~--~~~gn~E~~---AR~iRY~~L~~~A~e~-g~~~LatGHhaDDqaET~Lmr-L~RGsG 217 (676)
+|+.+|+++++++++..+.. ....+++.. ++..||++|.++|+++ |+++|++|||++|++|++ + ..+|++
T Consensus 276 ~la~~lgi~~~~v~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~D~~E~~--~~~~~~s~ 353 (525)
T 1gpm_A 276 MFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYPDVIESA--ASATGKAH 353 (525)
T ss_dssp HHTTTTCCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTT--C-------
T ss_pred HHHHHhCCcEEEEeccHHHHHhhcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCcchhhhc--Cccccccc
Confidence 89999999999998764321 112355543 4567889999999999 999999999999999984 2 224433
Q ss_pred C----CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 218 V----LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 218 ~----~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
. .++.|++. .....++|||++++|+||+++++++|+|+
T Consensus 354 ~iks~~~l~gl~~-----------------~~~~~~i~PL~~l~K~EVr~la~~lglp~ 395 (525)
T 1gpm_A 354 VIKSHHNVGGLPK-----------------EMKMGLVEPLKELFKDEVRKIGLELGLPY 395 (525)
T ss_dssp --------------------------------CCEEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred ccccccccccccc-----------------ccCCcEEehhhcCCHHHHHHHHHHcCCCH
Confidence 2 13444442 23457999999999999999999999995
No 8
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.98 E-value=2.6e-32 Score=314.99 Aligned_cols=236 Identities=15% Similarity=0.174 Sum_probs=183.6
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec--------------chhhhhhhccCCCCCCCccccHHH
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY--------------LPSIRLFCKCSHAHAVEYLTDMTK 65 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~--------------~~f~~~~c~~~~~w~~~~~~~~~~ 65 (676)
|+|||.|.++|++|.++|+|++ +++ ++.+++ ++||+|| +||++.+|+|+++|+ +....+.
T Consensus 155 ~~H~~~V~~lp~g~~vlA~s~~-~i~--ai~~~~~~i~GvQFHPE~~~t~~g~~ll~nFl~~i~~~~~~~~--~~~~~~~ 229 (697)
T 2vxo_A 155 LTHGDSVDKVADGFKVVARSGN-IVA--GIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFT--VQNRELE 229 (697)
T ss_dssp CCSSCCBSSCCTTCEEEEEETT-EEE--EEEETTTTEEEESSCTTSSSSTTHHHHHHHHHTTTTCCCSCCC--HHHHHHH
T ss_pred eecccceecCCCCeEEEEEeCC-ceE--EEEeCCCCEEEEEecccCCCCccchhhhhhhhhccccccccch--hhHHHHH
Confidence 8999999999999999999977 888 898877 9999999 799999999999999 5444555
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHH
Q 005804 66 YREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSH 145 (676)
Q Consensus 66 ~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~ 145 (676)
.++.+++.++ +++|+||+|||+||+++++|+++..+. .+++|+|||||++. ..|.+.|++
T Consensus 230 ~i~~Ir~~v~------~~~vvv~lSGGvDSsVla~Ll~~alG~------------~~V~aV~vd~g~~~--~~e~e~a~~ 289 (697)
T 2vxo_A 230 CIREIKERVG------TSKVLVLLSGGVDSTVCTALLNRALNQ------------EQVIAVHIDNGFMR--KRESQSVEE 289 (697)
T ss_dssp HHHHHHHHHT------TCEEEEECCSSHHHHHHHHHHHHHSCG------------GGEEEEEEECSCCC--SSTTHHHHH
T ss_pred HHHHHHHHhc------ccceEEEccCchHHHHHHHHHHHhcCC------------ceEEEEEeccccCC--cchHHHHHH
Confidence 5555555553 379999999999999999999875321 17999999999974 346788899
Q ss_pred HHHhcCCeEEEEECccccCCC----------------CCCC-----hHHHHHHH----HHHHHHHHHHHcCCC----EEe
Q 005804 146 RVSDMGIRCEIVRCDWLDGRP----------------KQGH-----LQEAARDM----RYRLFQKVCIQHQIG----VLL 196 (676)
Q Consensus 146 l~~~LGI~~~iv~~~~~~~~~----------------~~gn-----~E~~AR~i----RY~~L~~~A~e~g~~----~La 196 (676)
+|+++||++++++++..+... ..++ .++.+|.+ +++++.++|++.|++ +|+
T Consensus 290 ~a~~lGI~~~vvdi~~~f~~~~~~l~~~~~~~~Y~~g~~~~l~~v~~~~~kR~iig~~~~~v~~~~A~~~g~~~~~~~La 369 (697)
T 2vxo_A 290 ALKKLGIQVKVINAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLA 369 (697)
T ss_dssp HHHHTTCCEEEEECHHHHHTCCCBCC----------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEE
T ss_pred HHHHhCCcEEEecchHHHHhhhhhhcccccccchhcccCcCcccccCHHHHHhHHHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 999999999999987533210 0011 14455654 677778889999988 999
Q ss_pred eccccchhHHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 197 tGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
+||+++|++||+.+.+.+|++. +..++++++++.. . ..+..++|||++++|+||+++++++|+||
T Consensus 370 tG~~~~D~iEs~~~~l~~g~~~--iks~~nv~g~~~~--------~-~~~~~~i~PL~~L~K~EVr~la~~lGlP~ 434 (697)
T 2vxo_A 370 QGTLRPDLIESASLVASGKAEL--IKTHHNDTELIRK--------L-REEGKVIEPLKDFHKDEVRILGRELGLPE 434 (697)
T ss_dssp CCCSSCCSBCCHHHHHHSCCCG--GGSCCSSCHHHHH--------H-HHTTCEECGGGGSCHHHHHHHHHHTTCCH
T ss_pred EeccChhhhhhhhhhhhcCccc--cccccccchhhHH--------h-ccCCEEEEecccCCHHHHHHHHHHcCCCc
Confidence 9999999999999888888664 2222232222100 0 11246999999999999999999999999
No 9
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=6.9e-28 Score=239.01 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=126.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
++|+||+|||+||+++++++.+. |. ++.++|||||+++ |.+.++++|+.+|+++++++++..
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~---g~-----------~v~~~~v~~~~~~----~~~~~~~~a~~lgi~~~~~~~~~~ 68 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKL---GY-----------NPHLITINFGVIP----SYKLAEETAKILGFKHKVITLDRK 68 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHT---TE-----------EEEEEEEECSSSC----TTHHHHHHHHHHTCEEEEEECCTH
T ss_pred CeEEEEEECcHHHHHHHHHHHHc---CC-----------CeEEEEEeCCCch----HHHHHHHHHHHhCCCEEEEECCHH
Confidence 68999999999999999988642 22 7899999999976 678899999999999999988643
Q ss_pred cCC------CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccc
Q 005804 163 DGR------PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAY 236 (676)
Q Consensus 163 ~~~------~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~ 236 (676)
+.. ...+.+...|..+|+.+|.++|+ |+++|+||||+||++||+.+ .|+.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~c~~~~~~~l~~~A~--g~~~i~tGh~~dD~~et~~~--------~gl~~~~~---------- 128 (203)
T 3k32_A 69 IVEKAADMIIEHKYPGPAIQYVHKTVLEILAD--EYSILADGTRRDDRVPKLSY--------SEIQSLEM---------- 128 (203)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTT--TCSEEECCCCTTCCSSCCCH--------HHHHHHHH----------
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc--CCCEEEECCCcccchhhcch--------hhccCccc----------
Confidence 210 00122344566678888888887 89999999999999998743 23444432
Q ss_pred cccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchhH-HHHHHhhhh
Q 005804 237 SCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVR-NRIRMSLGD 294 (676)
Q Consensus 237 ~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~R-NrIR~~L~~ 294 (676)
..++.++|||+.++|+||++|++++ ++|++||||.++.+.+ ++||+.|.+
T Consensus 129 -------~~~~~iirPLl~~~k~eI~~~a~~~-l~~~~~~sn~~~~~dy~~~~r~~l~~ 179 (203)
T 3k32_A 129 -------RKNIQYITPLMGFGYKTLRHLASEF-FILEEIKSGTKLSSDYEAEIRHILKE 179 (203)
T ss_dssp -------HHTCEEECGGGGCCHHHHHHHHHHH-EEEEEECC------CTHHHHHHHHHH
T ss_pred -------ccCCeEEeccCCCCHHHHHHHHHHh-CCcccCCCCCCCCCcHHHHHHHHHhh
Confidence 1246799999999999999999999 9999999999887655 888877765
No 10
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.91 E-value=1.8e-24 Score=227.88 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHH
Q 005804 63 MTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~ 142 (676)
+++..+.+++.++ +++|+||+|||+||+++++++++..+. ++.++|||||++. .+|.+.
T Consensus 7 ~~~~~~~ir~~v~------~~kvlvalSGGvDSsvla~ll~~~~g~-------------~v~av~vd~g~~~--~~e~~~ 65 (308)
T 2dpl_A 7 VEEKVREIRETVG------DSKAIIALSGGVDSSTAAVLAHKAIGD-------------RLHAVFVNTGFLR--KGEPEF 65 (308)
T ss_dssp HHHHHHHHHHHHT------TSCEEEECCSSHHHHHHHHHHHHHHGG-------------GEEEEEEECSCCC--TTHHHH
T ss_pred HHHHHHHHHHHhC------CCCEEEEEeChHHHHHHHHHHHHhhCC-------------CEEEEEEcCCCCC--hHHHHH
Confidence 3444444555543 379999999999999999999875432 7899999999964 346667
Q ss_pred HHH-HHHhcCCeEEEEECccccCC--CCCCChHHH---HHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCC
Q 005804 143 VSH-RVSDMGIRCEIVRCDWLDGR--PKQGHLQEA---ARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNS 216 (676)
Q Consensus 143 V~~-l~~~LGI~~~iv~~~~~~~~--~~~gn~E~~---AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGs 216 (676)
+.+ +++++|+++++++++..+.. ....+++.. ++..||.+|.++|+++|+++|++|||+||++||..
T Consensus 66 ~~~~~a~~lgi~~~vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~~Et~~------- 138 (308)
T 2dpl_A 66 VVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQG------- 138 (308)
T ss_dssp HHHHHTTTTCCEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--------------
T ss_pred HHHHHHHHcCCcEEEEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccchhhcc-------
Confidence 888 55689999999998754321 112245543 45678999999999999999999999999999841
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCce
Q 005804 217 GVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDW 272 (676)
Q Consensus 217 G~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ 272 (676)
|+++++++.++ +...++.++|||++++|+||++|++++|+||
T Consensus 139 ---~iks~~~~~~l-----------~~~~~~~virPL~~l~K~EI~~~a~~~glp~ 180 (308)
T 2dpl_A 139 ---KIKSHHNVGGL-----------PEKLNLKLIEPLRDLYKDEVRELAKFLGLPE 180 (308)
T ss_dssp ----------------------------CCCEEECTTTTCCHHHHHHHHHHTTCCH
T ss_pred ---chhhhhccccC-----------CccCCCeEEEEcccCCHHHHHHHHHHhCCCc
Confidence 34444443221 2334578999999999999999999999997
No 11
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.90 E-value=1.6e-24 Score=234.43 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=130.2
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC------CcHHHHHHHHHHHHhcCCe
Q 005804 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE------ESKEEANIVSHRVSDMGIR 153 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~------eS~~Eae~V~~l~~~LGI~ 153 (676)
.++++|+||+|||+||+++|++|.+. |+ +++++|+||+.+. .+.++.+.++++|+++|||
T Consensus 15 ~~~~kVvVa~SGGvDSsv~a~lL~~~---G~-----------~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp 80 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLLQQQ---GY-----------QVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIE 80 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHHHTT---CC-----------EEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHc---CC-----------eEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCc
Confidence 45689999999999999999999753 32 7999999999864 2567899999999999999
Q ss_pred EEEEECcccc-----------CC-CCCCChHHHHHH-HHHHHHHHHHHH-cCCCEEeeccccchhHHHHHHHhhcCCCCC
Q 005804 154 CEIVRCDWLD-----------GR-PKQGHLQEAARD-MRYRLFQKVCIQ-HQIGVLLIAHHADDQAELFILRLSRNSGVL 219 (676)
Q Consensus 154 ~~iv~~~~~~-----------~~-~~~gn~E~~AR~-iRY~~L~~~A~e-~g~~~LatGHhaDDqaET~LmrL~RGsG~~ 219 (676)
+++++++..+ +. ....|++..|++ +||..|.++|++ +|+++|+||||++|++|+..+++.+|.+..
T Consensus 81 ~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~ 160 (380)
T 2der_A 81 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSN 160 (380)
T ss_dssp EEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccccccchHHHhcccccc
Confidence 9999986322 11 123478887755 699999999998 999999999999999999988899988654
Q ss_pred C-----cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCch
Q 005804 220 G-----LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLF 283 (676)
Q Consensus 220 G-----LaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y 283 (676)
+ |.+++. .....+++||.+++|+||+++++++|+++.+||+|++.+|
T Consensus 161 kdqsy~L~~l~~-----------------~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~~~kp~s~~~cf 212 (380)
T 2der_A 161 KDQSYFLYTLSH-----------------EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICF 212 (380)
T ss_dssp TCCGGGGSSCCH-----------------HHHHHEECCGGGSCHHHHHHHHHHTTCC------------
T ss_pred cccceeecCCCh-----------------hhcceeEccCCCCCHHHHHHHHHHcCCCCccCCCCCCccc
Confidence 3 333321 1124699999999999999999999999999999999887
No 12
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.90 E-value=2.5e-24 Score=232.66 Aligned_cols=173 Identities=15% Similarity=0.181 Sum_probs=142.1
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC------CcHHHHHHHHHHHHhcCCeE
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE------ESKEEANIVSHRVSDMGIRC 154 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~------eS~~Eae~V~~l~~~LGI~~ 154 (676)
++++|+||+|||+||+++|++|++. |+ +++++|+||+.++ .+.++.+.++++|+++|||+
T Consensus 8 ~~~kVlVa~SGGvDSsv~a~lL~~~---G~-----------~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~ 73 (376)
T 2hma_A 8 SKTRVVVGMSGGVDSSVTALLLKEQ---GY-----------DVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPY 73 (376)
T ss_dssp GGSEEEEECCSSHHHHHHHHHHHHT---TC-----------EEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHc---CC-----------cEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcE
Confidence 4579999999999999999999753 32 7999999999874 25678999999999999999
Q ss_pred EEEECccccC------------CCCCCChHHHH-HHHHHHHHHHHHHHcCCCEEeeccccchhH-HHHHHHhhcCCCCCC
Q 005804 155 EIVRCDWLDG------------RPKQGHLQEAA-RDMRYRLFQKVCIQHQIGVLLIAHHADDQA-ELFILRLSRNSGVLG 220 (676)
Q Consensus 155 ~iv~~~~~~~------------~~~~gn~E~~A-R~iRY~~L~~~A~e~g~~~LatGHhaDDqa-ET~LmrL~RGsG~~G 220 (676)
++++++..+. .....+++..| |.+||.+|.++|+++|+++|+||||++|++ |+..+++.+|.+..+
T Consensus 74 ~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~k 153 (376)
T 2hma_A 74 YSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGK 153 (376)
T ss_dssp EEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTT
T ss_pred EEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhhCCCchhhhhhcccccc
Confidence 9999875321 11234778766 677899999999999999999999999999 888888888876543
Q ss_pred -----cccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCCCCCchh
Q 005804 221 -----LAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV 284 (676)
Q Consensus 221 -----LaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN~d~~y~ 284 (676)
|.+|+. .....+++||.+++|+||+++++++|+++.++|++++.+|.
T Consensus 154 dqsyfL~~l~~-----------------~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~~cf~ 205 (376)
T 2hma_A 154 DQTYFLSQLSQ-----------------EQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKKKDSTGICFI 205 (376)
T ss_dssp CCGGGGTTCCH-----------------HHHTTEECTTTTCCHHHHHHHHHHTTCTTTTCCCCCSCTTT
T ss_pred ccchhccCCCh-----------------hhcCcEEecCcCCCHHHHHHHHHHcCCCcccCCCCCCcccc
Confidence 443332 11236899999999999999999999999999999988773
No 13
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.88 E-value=4.3e-23 Score=203.66 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=117.1
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
+++|+||+|||+||+++++++.+. +. ++.++|||||++.. +|.++++++|+++|++++++++++
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~---~~-----------~v~~~~~~~~~~~~--~e~~~a~~~a~~lgi~~~~~~~~~ 66 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE---FE-----------EVETVTFHYNQRHS--QEVEVAKSIAEKLGVKNHLLDMSL 66 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH---CS-----------EEEEEEEESSCTTC--HHHHHHHHHHHTTCCCEEEEECGG
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc---CC-----------ceEEEEEeCCCCCH--HHHHHHHHHHHHhCCCeEEEeChH
Confidence 378999999999999999998753 21 78999999999753 678899999999999999999875
Q ss_pred ccC-------CC-C--------CCChHHHHHHHHH-HHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccc
Q 005804 162 LDG-------RP-K--------QGHLQEAARDMRY-RLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224 (676)
Q Consensus 162 ~~~-------~~-~--------~gn~E~~AR~iRY-~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm 224 (676)
... .. . ..+.+..+|.++| .++.++|+++|+++|++|||+||+++. +..|+.++.++.++
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~---~~~~~~~~~~l~~~ 143 (219)
T 3bl5_A 67 LNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGY---PDCRDEFVKSCNVT 143 (219)
T ss_dssp GGGGSTGGGC--------------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CC---GGGSHHHHHHHHHH
T ss_pred HhhhcccccccccccccccccCCCCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCCC---CCCCHHHHHHHHHH
Confidence 210 00 0 0112225788889 788999999999999999999999872 34444444455554
Q ss_pred cccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc
Q 005804 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD 271 (676)
Q Consensus 225 ~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp 271 (676)
.+.. .+.++.++|||++++|+||++|++++|+|
T Consensus 144 ~~~~--------------~~~~~~ii~PL~~~~K~ei~~~a~~~glp 176 (219)
T 3bl5_A 144 VNLA--------------MEKPFVIHTPLMWLNKAETWKLADELGAL 176 (219)
T ss_dssp HHHH--------------HTSCCEEECTTTTCCHHHHHHHHHHTTCH
T ss_pred HHhc--------------cCCCeEEEeccccCCHHHHHHHHHHcCCC
Confidence 4321 12456899999999999999999999994
No 14
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.83 E-value=2.3e-21 Score=194.60 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=116.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCe-EEEEECcc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCDW 161 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~-~~iv~~~~ 161 (676)
++++|++|||+||+++++++.+. +. ++.++|+|||+|. ..|.+.++++|+++|++ ++++++++
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~---~~-----------~v~av~~~~g~~~--~~e~~~a~~~a~~lgi~~~~vi~~~~ 66 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD---YD-----------DVHCITFDYGQRH--RAEIEVAQELSQKLGAAAHKVLDVGL 66 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---CS-----------EEEEEEEESSSSC--HHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred CCEEEEecCcHHHHHHHHHHHHc---CC-----------CEEEEEEECCCCC--HHHHHHHHHHHHHhCCCceEEEeChh
Confidence 68999999999999999988653 21 7899999999975 47889999999999999 99999872
Q ss_pred c--cC----------CCC----CC---ChHHHHHHHHHHHH-HHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCc
Q 005804 162 L--DG----------RPK----QG---HLQEAARDMRYRLF-QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGL 221 (676)
Q Consensus 162 ~--~~----------~~~----~g---n~E~~AR~iRY~~L-~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GL 221 (676)
. +. .+. .+ +.+..+|..+|..+ ..+|+++|+++|++|||+||++|. +..|+. ++
T Consensus 67 l~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~~---~~~r~~---~~ 140 (232)
T 2pg3_A 67 LNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGY---PDCRDE---FV 140 (232)
T ss_dssp HHHTSHHHHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCC---GGGSHH---HH
T ss_pred HHHHhhhhcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCCC---CCCCHH---HH
Confidence 1 10 000 11 22245788888777 899999999999999999999862 112222 23
Q ss_pred ccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC-ce
Q 005804 222 AGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR-DW 272 (676)
Q Consensus 222 aGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL-p~ 272 (676)
.+|.....+ ....++.++|||++++|.||+++++++|+ |+
T Consensus 141 ~~~~~~~~~-----------~~~~~~~i~~PL~~~~K~ei~~~a~~~gl~~~ 181 (232)
T 2pg3_A 141 KALNQAIVL-----------GIARDIRFETPLMWLNKAETWALADYYQQLDT 181 (232)
T ss_dssp HHHHHHHHH-----------HHTSCCEEECTTTTCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH-----------hCCCCeEEEEecCCCCHHHHHHHHHHcCCCcc
Confidence 333321111 01134689999999999999999999999 75
No 15
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=99.82 E-value=4e-20 Score=183.78 Aligned_cols=148 Identities=10% Similarity=0.123 Sum_probs=111.1
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
+++|+||+|||+||+||++++.++. . ++.++|||||++ ..++.++++++|+++||+++++..+.
T Consensus 44 ~~~v~Va~SGGkDS~vLL~ll~~~~---~-----------~v~~v~vd~g~~--~~e~~~~v~~~~~~~gi~~~v~~~~~ 107 (215)
T 1sur_A 44 PGEYVLSSSFGIQAAVSLHLVNQIR---P-----------DIPVILTDTGYL--FPETYRFIDELTDKLKLNLKVYRATE 107 (215)
T ss_dssp CSEEEEECCCCTTHHHHHHHHHHHS---T-----------TCEEEEEECSCB--CHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhC---C-----------CCeEEEeeCCCC--CHHHHHHHHHHHHHhCCcEEEEeCCC
Confidence 4699999999999999999998752 1 578999999995 46778999999999999999998653
Q ss_pred cc-------CCCCCCChH---HHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccc
Q 005804 162 LD-------GRPKQGHLQ---EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (676)
Q Consensus 162 ~~-------~~~~~gn~E---~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf 231 (676)
.. ......++. ..+...+...|.++++++|++++++||+.||..++. +|+...
T Consensus 108 ~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~~r~--------------~~~~~~--- 170 (215)
T 1sur_A 108 SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRA--------------NLPVLA--- 170 (215)
T ss_dssp CHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSSTTT--------------TCCSEE---
T ss_pred CHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhhhhc--------------CCCccc---
Confidence 21 000000111 134455556788999999999999999999954321 222211
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
...+..++|||++++|+||++|++++|+||.
T Consensus 171 -----------~~~~~~~i~PLl~~t~~dI~~y~~~~~lp~~ 201 (215)
T 1sur_A 171 -----------IQRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 201 (215)
T ss_dssp -----------EETTEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred -----------cCCCEEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 1134678999999999999999999999994
No 16
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.81 E-value=5.2e-20 Score=201.02 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=123.7
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhc-----CCe
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM-----GIR 153 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~L-----GI~ 153 (676)
+.++++|+||+|||+||+++++++.+. |. ++.|+|||++. -.+..+.+.++++|+.+ |++
T Consensus 184 i~~~~kvlvalSGGvDS~vll~ll~~~---G~-----------~v~av~v~~~~-~~~~~~~~~v~~~a~~l~~~~ggi~ 248 (413)
T 2c5s_A 184 VGVGGKVMVLLSGGIDSPVAAYLTMKR---GV-----------SVEAVHFHSPP-FTSERAKQKVIDLAQELTKYCKRVT 248 (413)
T ss_dssp TTTTEEEEEECCSSSHHHHHHHHHHHB---TE-----------EEEEEEEECTT-TSCHHHHHHHHHHHHHHGGGSSCEE
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHHc---CC-----------cEEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCCe
Confidence 344689999999999999999998752 32 79999999851 13467778899999988 999
Q ss_pred EEEEECccccCC----CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccc
Q 005804 154 CEIVRCDWLDGR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ 229 (676)
Q Consensus 154 ~~iv~~~~~~~~----~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~ 229 (676)
+++++++..... ......+..||+++|+++.++|++.|+++|++|||+||++|++++++. +++.
T Consensus 249 ~~vv~~~~~~~~i~~~~~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ae~~l~~l~---------~~~~--- 316 (413)
T 2c5s_A 249 LHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMH---------TINE--- 316 (413)
T ss_dssp EEEEECHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTTSCCHHHHH---------HHGG---
T ss_pred EEEEECcHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHh---------cccc---
Confidence 999998653210 111236678999999999999999999999999999999998876654 2221
Q ss_pred ccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceee-CCCC
Q 005804 230 IFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE-DPTN 278 (676)
Q Consensus 230 lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~ve-DpSN 278 (676)
..++.++|||+.++|+||+++++++|++... .|.+
T Consensus 317 --------------~~~~~virPL~~l~K~eI~~~a~~~Gl~~~~~~p~~ 352 (413)
T 2c5s_A 317 --------------VTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPYE 352 (413)
T ss_dssp --------------GCCSCEECTTTTCCHHHHHHHHHHTTCHHHHTSCC-
T ss_pred --------------cCCCEEEeccCCCCHHHHHHHHHHcCCCccccCCCC
Confidence 1234699999999999999999999986443 3444
No 17
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.77 E-value=5.6e-19 Score=180.58 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=131.7
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHH
Q 005804 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (676)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Ea 140 (676)
.+.+++.+.+...+++. +.++|+||+|||+||+++++++.+..+. .+++++|+|||.+ +|.
T Consensus 4 ~~~~~~~~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~------------~~v~av~~~~~~~----~~~ 64 (257)
T 2e18_A 4 LDYDKVIERILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGK------------EKVLGLIMPYFEN----KDV 64 (257)
T ss_dssp ECHHHHHHHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCG------------GGEEEEECCSSCS----THH
T ss_pred CCHHHHHHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCC------------CcEEEEEeCCCCc----hHH
Confidence 34677777777777765 5678999999999999999998875421 1689999999963 678
Q ss_pred HHHHHHHHhcCCeEEEEECcccc---C---CCCCC--ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHh
Q 005804 141 NIVSHRVSDMGIRCEIVRCDWLD---G---RPKQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRL 212 (676)
Q Consensus 141 e~V~~l~~~LGI~~~iv~~~~~~---~---~~~~g--n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL 212 (676)
+.++++|+.+|+++++++++... . ..... ..+..++++|+.++.++|+++|+.+|+|||+.+|.
T Consensus 65 ~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e~~-------- 136 (257)
T 2e18_A 65 EDAKLVAEKLGIGYKVINIKPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFL-------- 136 (257)
T ss_dssp HHHHHHHHHHTCEEEECCCHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHHHH--------
T ss_pred HHHHHHHHHhCCCEEEEEChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhHHh--------
Confidence 88999999999999999876421 0 00001 13445556999999999999999999999987764
Q ss_pred hcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCCCch
Q 005804 213 SRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRSPLF 283 (676)
Q Consensus 213 ~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d~~y 283 (676)
+|.+.. . ..+..+++||.+++|.||+++++.+|+| ++++|.+.+..+
T Consensus 137 -~Gy~t~--~---------------------g~~~~~i~Pl~~l~K~ev~~la~~~gip~~i~~~~ps~~l~~ 185 (257)
T 2e18_A 137 -TGYFTK--W---------------------GDGASDYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAGLWE 185 (257)
T ss_dssp -HTCSCT--T---------------------STTCSSBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCCSST
T ss_pred -cCCeec--c---------------------CCCccCEeecCCCcHHHHHHHHHHcCCCHHHhCCCCCCCcCC
Confidence 232211 0 0123579999999999999999999999 578888888655
No 18
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.77 E-value=5.7e-19 Score=192.30 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=113.7
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECcc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDW 161 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~~ 161 (676)
++|+||+|||+||+++++++.+.. +. +++++|||||+ .+|.+.++++|+++|+ ++++++++.
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~--g~-----------~V~av~vd~g~----~~e~e~a~~~A~~lGi~~~~vvd~~~ 63 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY--RA-----------EVIAFTADIGQ----GEEVEEAREKALRTGASKAIALDLKE 63 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH--TC-----------EEEEEEEESSC----SSCHHHHHHHHHHHTCSEEEEEECHH
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh--CC-----------cEEEEEEeCCC----HHHHHHHHHHHHHhCCCeEEEEeCcH
Confidence 479999999999999999987532 22 78999999998 2467889999999999 899998863
Q ss_pred ccC--------CCC---CC---ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc--hhHHHHHHHhhcCCCCCCccccc
Q 005804 162 LDG--------RPK---QG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD--DQAELFILRLSRNSGVLGLAGMA 225 (676)
Q Consensus 162 ~~~--------~~~---~g---n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD--DqaET~LmrL~RGsG~~GLaGm~ 225 (676)
.+. ... .+ .-...+|.+++..|.++|++.|+++|++|||+| ||++.-+ |+.++.
T Consensus 64 ef~~~~~~~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d~nDq~~f~~----------g~~~l~ 133 (400)
T 1kor_A 64 EFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFEL----------TAYALK 133 (400)
T ss_dssp HHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHH----------HHHHHC
T ss_pred HHHHHhhHHHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCCcccHHHHHH----------HHHhcC
Confidence 210 000 00 012248999999999999999999999999997 9998521 233332
Q ss_pred ccccccccccccccccccCCCeEEEeeCCCC---CHHHHHHHHHhCCCceeeCCCC
Q 005804 226 FSSQIFSSYAYSCHDDLKNHSILLVRPLLDF---SKDDMYKICQGGNRDWVEDPTN 278 (676)
Q Consensus 226 ~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~l---sK~EIr~y~~~~gLp~veDpSN 278 (676)
+ .+.+++||+++ +|+||++|++++|+||..++++
T Consensus 134 p-------------------~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~~ 170 (400)
T 1kor_A 134 P-------------------DIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK 170 (400)
T ss_dssp T-------------------TCEEECGGGTCCCCSHHHHHHHHHHTTCCCC-----
T ss_pred C-------------------CCEEEEeecccccCCHHHHHHHHHHcCCCcccCCCC
Confidence 1 34789999998 9999999999999999876554
No 19
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.75 E-value=5.3e-18 Score=174.61 Aligned_cols=174 Identities=13% Similarity=0.145 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHH
Q 005804 63 MTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~~-i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae 141 (676)
.+++.+.+...+.++. ....++|+||+|||+||+++++++.+.... ++.++|+++|. .+.+|.+
T Consensus 5 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~~~~~~~-------------~v~av~~~~~~--~~~~e~~ 69 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKE-------------NAHALLMPSSV--SMPENKT 69 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHGG-------------GEEEEECCCSS--SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHHHHhCCC-------------CEEEEEeCCCC--CCHHHHH
Confidence 4444554444443321 133578999999999999999998875421 68999999997 4678899
Q ss_pred HHHHHHHhcCCeEEEEECcccc---C---CCCC-CChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhc
Q 005804 142 IVSHRVSDMGIRCEIVRCDWLD---G---RPKQ-GHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSR 214 (676)
Q Consensus 142 ~V~~l~~~LGI~~~iv~~~~~~---~---~~~~-gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~R 214 (676)
.++++|+.+|+++++++++... . .... ...+..++++|+.++.++|++.|+.+|+|||. .|++ .
T Consensus 70 ~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~~----~E~~-----~ 140 (268)
T 1xng_A 70 DALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNK----SERM-----L 140 (268)
T ss_dssp HHHHHHHHHTCCEEECCCHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH----HHHH-----H
T ss_pred HHHHHHHHcCCCEEEEeChHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCcH----HHHh-----c
Confidence 9999999999999998876421 0 0100 12456678899999999999999999999974 4554 2
Q ss_pred CCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCCCch
Q 005804 215 NSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRSPLF 283 (676)
Q Consensus 215 GsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d~~y 283 (676)
|.+.. . ..+..+++||.+++|.||++|++.+|+| ++++|.+.+..+
T Consensus 141 Gy~t~--~---------------------gd~~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~psa~l~~ 188 (268)
T 1xng_A 141 GYGTL--F---------------------GDLACAINPIGELFKTEVYELARRLNIPKKILNKPPSADLFV 188 (268)
T ss_dssp TCSCT--T---------------------TTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCCSST
T ss_pred Ccccc--c---------------------CCCCeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCCCcCcCC
Confidence 32210 0 0123589999999999999999999999 778888877655
No 20
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.75 E-value=2e-18 Score=176.93 Aligned_cols=171 Identities=15% Similarity=0.207 Sum_probs=120.2
Q ss_pred HHHHHHHH----HHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHH
Q 005804 63 MTKYREAF----SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138 (676)
Q Consensus 63 ~~~~~~~~----~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~ 138 (676)
.++..+.+ +..+.+. ..++|+||+|||+||+++++++.++.+. +++++|++||.+ +.+
T Consensus 6 ~~~~~~~l~~~l~d~v~~~---g~~~vvv~lSGGiDSsv~a~l~~~~~g~-------------~v~av~~~~~~~--~~~ 67 (249)
T 3p52_A 6 WQKITEKMCDFIQEKVKNS---QSQGVVLGLSGGIDSALVATLCKRALKE-------------NVFALLMPTQIS--NKA 67 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTS---SCSEEEEECCSSHHHHHHHHHHHHHHTT-------------SEEEEECCSCCS--SCH
T ss_pred HHHHHHHHHHHHHHHHHHh---CCCCEEEEcCCCHHHHHHHHHHHHHcCC-------------cEEEEEecCCCC--CHH
Confidence 44444444 4444443 3478999999999999999999875432 689999999975 346
Q ss_pred HHHHHHHHHHhcCCeEEEEECcccc---CC----CCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHH
Q 005804 139 EANIVSHRVSDMGIRCEIVRCDWLD---GR----PKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILR 211 (676)
Q Consensus 139 Eae~V~~l~~~LGI~~~iv~~~~~~---~~----~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~Lmr 211 (676)
+.+.++++|+.+|+++++++++..+ .. +.....+..++++|+.++..+|+++|+.+|.|||. +| +++
T Consensus 68 ~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn~-se---~~~-- 141 (249)
T 3p52_A 68 NLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNK-SE---LLL-- 141 (249)
T ss_dssp HHHHHHHHHHHHTCEEEECCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HH---HHH--
T ss_pred HHHHHHHHHHHhCCCEEEEECcHHHHHHHHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCCH-HH---HHc--
Confidence 7788999999999999998876421 11 11114577889999999999999999998888875 33 221
Q ss_pred hhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCCCch
Q 005804 212 LSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRSPLF 283 (676)
Q Consensus 212 L~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d~~y 283 (676)
|-+. .. ..+..+++||.+++|.||+++++.+|+| ++++|.+.+...
T Consensus 142 ---g~~t--~~---------------------gd~~~~i~PL~~l~K~eV~~la~~~gip~~i~~k~psa~L~~ 189 (249)
T 3p52_A 142 ---GYGT--IY---------------------GDLACAFNPIGSLYKSEIYALAKYLNLHENFIKKAPSADLWE 189 (249)
T ss_dssp ---TCSC--TT---------------------TTTCCSEETTTTSCHHHHHHHHHHTTCCHHHHHC--------
T ss_pred ---cchh--hh---------------------ccccCccccccCCcHHHHHHHHHHcCCcHHhcCCCCCcccCC
Confidence 1110 00 0122479999999999999999999999 889999988553
No 21
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=187.55 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=119.8
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCe-EEEEECc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR-CEIVRCD 160 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~-~~iv~~~ 160 (676)
+++|+||+|||+||+++++++.+. |. +++++|+|||.+ +|.+.++++|+++|++ +++++++
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~---G~-----------eV~av~vd~g~~----~e~e~a~~~A~~lGi~~~~vvd~~ 66 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ---GY-----------DVIAYLANIGQK----EDFEEARKKALKLGAKKVFIEDVS 66 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT---TE-----------EEEEEEEESSCC----CCHHHHHHHHHHHTCSEEEEEECH
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc---CC-----------EEEEEEEECCcH----HHHHHHHHHHHHhCCCEEEEEeCh
Confidence 478999999999999999998753 32 799999999986 3578899999999998 8888875
Q ss_pred cccC----------CCC-C-C--ChHHHHHHHHHHHHHHHHHHcCCCEEeecccc--chhHHHHHHHhhcCCCCCCcccc
Q 005804 161 WLDG----------RPK-Q-G--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGM 224 (676)
Q Consensus 161 ~~~~----------~~~-~-g--n~E~~AR~iRY~~L~~~A~e~g~~~LatGHha--DDqaET~LmrL~RGsG~~GLaGm 224 (676)
..+. ... . . .-...+|.++|.++.++|++.|+++|++|||. +||++.- + |+.++
T Consensus 67 ~ef~~~~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~---l-------g~~~l 136 (413)
T 2nz2_A 67 REFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFE---L-------SCYSL 136 (413)
T ss_dssp HHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHH---H-------HHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHHH---H-------HHHhc
Confidence 2111 000 0 0 01124888999999999999999999999999 8998832 1 12222
Q ss_pred cccccccccccccccccccCCCeEEEeeCC------CC-CHHHHHHHHHhCCCceeeCCCCCCCchhHHHHH
Q 005804 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLL------DF-SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289 (676)
Q Consensus 225 ~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL------~l-sK~EIr~y~~~~gLp~veDpSN~d~~y~RNrIR 289 (676)
. .++.+++||+ ++ +|+||++|++++|+||.++|.+.. .+.+|.++
T Consensus 137 ~-------------------p~l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~~~~~~~~-S~d~n~~g 188 (413)
T 2nz2_A 137 A-------------------PQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPW-SMDENLMH 188 (413)
T ss_dssp C-------------------TTCEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCCSSCCCSS-CEEECSSC
T ss_pred C-------------------CCCceeccccchhhhccCCCHHHHHHHHHHcCCCeecCCCCCC-CCChhhhh
Confidence 2 1357999999 88 999999999999999997766532 33444443
No 22
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=99.74 E-value=6.9e-18 Score=185.92 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=117.5
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEE
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIV 157 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv 157 (676)
+.+++||+||+|||+||++++++|++. |+ +++|+|+|||.+. .+|.+.++++|+++|+ +++++
T Consensus 7 l~~~~KVvVA~SGGlDSSvll~~L~e~---G~-----------eViavtvd~Gq~~--~~ele~a~~~A~~lGi~~~~vv 70 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQK---GA-----------VPYAYTANLGQPD--EEDYDAIPRRAMEYGAENARLI 70 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHHT---TC-----------EEEEEEEECCCTT--CSCTTHHHHHHHHHTCSEEEEE
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHHc---CC-----------EEEEEEEEcCCCC--HHHHHHHHHHHHHhCCCeEEEE
Confidence 567899999999999999999998652 33 7999999999853 3567889999999999 89999
Q ss_pred ECccccCC--------------CC---CCChHHHHHHHHHHHHHHHHHHcCCCEEeeccc--cchhHHHHHHHhhcCCCC
Q 005804 158 RCDWLDGR--------------PK---QGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH--ADDQAELFILRLSRNSGV 218 (676)
Q Consensus 158 ~~~~~~~~--------------~~---~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHh--aDDqaET~LmrL~RGsG~ 218 (676)
+++..+.. .. -......+|.+++.+|.++|++.|+++|++||| .+||+.-- + +
T Consensus 71 D~~eef~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq~rf~---~--~--- 142 (455)
T 1k92_A 71 DCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFY---R--Y--- 142 (455)
T ss_dssp ECHHHHHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHHHH---H--H---
T ss_pred eChHHHHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHH---H--H---
Confidence 98532210 00 112456789999999999999999999999997 58887421 1 1
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCC-------CCHHHHHHHHHhCCCceee
Q 005804 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD-------FSKDDMYKICQGGNRDWVE 274 (676)
Q Consensus 219 ~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~-------lsK~EIr~y~~~~gLp~ve 274 (676)
+.++. .++.++.|+++ ++|+||++|++++|||+..
T Consensus 143 --~~al~-------------------p~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~ 184 (455)
T 1k92_A 143 --GLLTN-------------------AELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKM 184 (455)
T ss_dssp --HHHHC-------------------TTCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCC
T ss_pred --HHhcC-------------------CCCEEECeeccccccccCCCHHHHHHHHHHcCCCccc
Confidence 11111 13578999987 8999999999999999964
No 23
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=99.74 E-value=1.4e-17 Score=176.78 Aligned_cols=178 Identities=12% Similarity=-0.000 Sum_probs=116.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
++++||+|||+||+||++|+.++.... ..++.++|||||++ ..++.+++.++|+++|+++++...+..
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~----------~~~i~vv~vDtg~~--~~et~~~v~~~~~~~gi~l~v~~~~~~ 114 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPG----------KLPFPVMHVDTRWK--FQEMYRFRDQMVEEMGLDLITHINPDG 114 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS----------CCSSCEEEECCSCC--CHHHHHHHHHHHHTTTCCEEEECC---
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcccc----------CCCEEEEEEECCCC--CHHHHHHHHHHHHHcCCCEEEEeCchH
Confidence 689999999999999999998875421 11467899999995 467889999999999999999876542
Q ss_pred cCC--C-CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccccccccc
Q 005804 163 DGR--P-KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCH 239 (676)
Q Consensus 163 ~~~--~-~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~ 239 (676)
... + ...+....|...+...|.++++++|++++++||++||......|++.+-.| .+.++.+..+- +..+....
T Consensus 115 ~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~~Ra~~~~~~~r~--~~~~~d~~~~r-p~l~~~~n 191 (325)
T 1zun_A 115 VAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRD--SKHRWDPKNQR-PELWNVYN 191 (325)
T ss_dssp -----------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSGGGGGCCSEEEEC--TTCCBCGGGCC-CCCSSCCC
T ss_pred HhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhhhhhcccceeccc--cccccCccccC-cchhhhcc
Confidence 110 0 001122345566677899999999999999999999876543344332111 11222221100 00000000
Q ss_pred ccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeC
Q 005804 240 DDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVED 275 (676)
Q Consensus 240 ~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veD 275 (676)
.....++...++||++++++||.+|++++||||...
T Consensus 192 ~~~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~L 227 (325)
T 1zun_A 192 GNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPL 227 (325)
T ss_dssp CCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCSC
T ss_pred ccccCCCeEEEEchhhCCHHHHHHHHHHhCCCcchh
Confidence 001122356799999999999999999999999543
No 24
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.71 E-value=2.5e-17 Score=168.67 Aligned_cols=175 Identities=12% Similarity=0.102 Sum_probs=126.1
Q ss_pred ccHHHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHH
Q 005804 61 TDMTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEE 139 (676)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~-i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~E 139 (676)
++.++..+.+...+..+. -...++|+||+|||+||+++++++.+... +..++|++++. .+.+|
T Consensus 7 ~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~~~--------------~~~av~~~~~~--~~~~~ 70 (249)
T 3fiu_A 7 FSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGL--------------PTTALILPSDN--NQHQD 70 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTTS--------------CEEEEECCCTT--SCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHhCC--------------CCEEEEecCCC--CCHHH
Confidence 345555555555444432 23457899999999999999999876421 33499999986 46788
Q ss_pred HHHHHHHHHhcCCeEEEEECccccC------C---CCCCChHHHH-----HHHHHHHHHHHHHHcCCCEEeeccccchhH
Q 005804 140 ANIVSHRVSDMGIRCEIVRCDWLDG------R---PKQGHLQEAA-----RDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (676)
Q Consensus 140 ae~V~~l~~~LGI~~~iv~~~~~~~------~---~~~gn~E~~A-----R~iRY~~L~~~A~e~g~~~LatGHhaDDqa 205 (676)
.+.++++|+.+|+++++++++..+. . +.....+..| +++|+.++..+|+++|+.+|+|||. +
T Consensus 71 ~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn~-s--- 146 (249)
T 3fiu_A 71 MQDALELIEMLNIEHYTISIQPAYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDNA-C--- 146 (249)
T ss_dssp HHHHHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCH-H---
T ss_pred HHHHHHHHHHhCCCEEEEEChHHHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCCH-H---
Confidence 9999999999999999998763211 0 1011223333 7899999999999999999999964 3
Q ss_pred HHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--eeeCCCCCCCch
Q 005804 206 ELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WVEDPTNRSPLF 283 (676)
Q Consensus 206 ET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~veDpSN~d~~y 283 (676)
|+.. | ...+.| .+..+++||.+++|.||+++++.+|+| +++.|.+.+..+
T Consensus 147 E~~~-----G--~~t~~g---------------------d~~~~i~PL~~l~K~eVr~lA~~lglp~~i~~k~psa~L~~ 198 (249)
T 3fiu_A 147 EWYM-----G--YFTKFG---------------------DGAADILPLVNLKKSQVFELGKYLDVPKNILDKAPSAGLWQ 198 (249)
T ss_dssp HHHH-----T--CSCTTT---------------------TTCCSBCTTTTCCHHHHHHHHHHTTCCHHHHHSCCCCCSST
T ss_pred HHhc-----C--chhccC---------------------CCCcceeecccCcHHHHHHHHHHcCCcHHHccCCCCCccCC
Confidence 4431 2 111111 123489999999999999999999999 899999988766
No 25
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.71 E-value=1.8e-17 Score=169.43 Aligned_cols=148 Identities=10% Similarity=0.133 Sum_probs=110.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
+++|+||+|||+||+||++++.+.. . ++.++|+|||++ ..++.++++++|+++||+++++..+.
T Consensus 45 ~~~v~va~SGG~DS~vLL~ll~~~~---~-----------~v~vv~idtg~~--~~et~~~~~~~~~~~gi~~~v~~~~~ 108 (252)
T 2o8v_A 45 PGEYVLSSSFGIQAAVSLHLVNQIR---P-----------DIPVILTDTGYL--FPETYRFIDELTDKLKLNLKVYRATE 108 (252)
T ss_dssp CSCEEEECCCSTTHHHHHHHHHHHS---T-----------TCEEEECCCSCB--CHHHHHHHHHHHHHTTCEEEECCCSS
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHhC---C-----------CCeEEEecCCCC--CHHHHHHHHHHHHHhCCceEEEcCCC
Confidence 4689999999999999999998652 1 578999999995 46788999999999999999887653
Q ss_pred ccC--CCCCC-----ChH---HHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccc
Q 005804 162 LDG--RPKQG-----HLQ---EAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIF 231 (676)
Q Consensus 162 ~~~--~~~~g-----n~E---~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf 231 (676)
... ....+ +++ ..|...+...|.++++++|++++++||++||..++. +|+...
T Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds~~R~--------------~l~~~~--- 171 (252)
T 2o8v_A 109 SAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRA--------------NLPVLA--- 171 (252)
T ss_dssp CHHHHHHHTCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTTTCCT--------------TSCSEE---
T ss_pred CHHHHHHHcCCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEecccccccccc--------------cCceee---
Confidence 210 00001 111 234445556788999999999999999999965421 222211
Q ss_pred ccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 232 ~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
...++.+++||++++|+||++|++++|+||.
T Consensus 172 -----------~~~~~~~i~PL~~wt~~dV~~y~~~~~lp~~ 202 (252)
T 2o8v_A 172 -----------IQRGVFKVLPIIDWDNRTIYQYLQKHGLKYH 202 (252)
T ss_dssp -----------ESSSSEEECGGGSCCHHHHHHHHHHTTCCCC
T ss_pred -----------cCCCeEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 1234678999999999999999999999984
No 26
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.1e-16 Score=158.11 Aligned_cols=152 Identities=9% Similarity=0.056 Sum_probs=108.5
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC----eEEEEE
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI----RCEIVR 158 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI----~~~iv~ 158 (676)
++|+||+|||+||+||++|+.+.... ..++.++|+|||++ ..+..+++.++|+++|+ +++++.
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-----------~~~i~vv~iDtg~~--~~et~~~v~~~~~~~gl~~~~~l~v~~ 108 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-----------YYMPELLFIDTLHH--FPQTLTLKNEIEKKYYQPKNQTIHVYK 108 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-----------SCCCEEEEECCSCB--CHHHHHHHHHHHHHHTGGGTCCCEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-----------CCCeeEEEecCCCC--CHHHHHHHHHHHHHhCCCCCCCeEEEe
Confidence 47999999999999999999876431 01567899999995 46788999999999999 999887
Q ss_pred Cccc----cCCCCCC------ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccc
Q 005804 159 CDWL----DGRPKQG------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSS 228 (676)
Q Consensus 159 ~~~~----~~~~~~g------n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~ 228 (676)
.+.. ......| ++...|...+...|.++++++|++.+++||++||... |. +++...
T Consensus 109 ~~~~~~~~~~~~~~G~~~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds~~-------R~-------~~~~~~ 174 (261)
T 2oq2_A 109 PDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSA-------RS-------QLSIIE 174 (261)
T ss_dssp STTCSSHHHHHHHHCTTHHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGCGG-------GG-------GCCSEE
T ss_pred cCCccCHHHHHHHhCCCccccChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccchHH-------Hc-------cCCcee
Confidence 5410 0000001 1222233333455778899999999999999999532 22 122111
Q ss_pred cccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 229 QIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 229 ~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
. ....++..++||++++++||++|++++||||.
T Consensus 175 -~-----------~~~~~~~ki~PL~~wt~~dV~~Yi~~~~lp~~ 207 (261)
T 2oq2_A 175 -I-----------DELNGILKINPLINWTFEQVKQYIDANNVPYN 207 (261)
T ss_dssp -E-----------ETTTTEEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred -e-----------cCCCCeEEEechHhCCHHHHHHHHHHcCCCCC
Confidence 0 01235667999999999999999999999985
No 27
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.56 E-value=2.6e-14 Score=156.14 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=109.0
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCD 160 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~ 160 (676)
.+||+||+|||+||++++.+|++ .|+ +++++|+|.|.+ +|.+.+++.|+++|+ +++++++.
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke---~G~-----------eViavt~d~Gq~----~Ele~A~~vA~~lGi~~~~VvDl~ 75 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCE---KGF-----------DVIAYVANVGQK----DDFVAIKEKALKTGASKVYVEDLR 75 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH---TTC-----------EEEEEEEESSCC----CCHHHHHHHHHHHTCSEEEEEECH
T ss_pred cCCEEEEeCCcHHHHHHHHHHHH---CCC-----------eEEEEEEEcCCH----HHHHHHHHHHHHcCCceEEEEecH
Confidence 37899999999999999999864 243 799999999975 357788999999999 99999986
Q ss_pred cccC--------CCC---CC---ChHHHHHHHHHHHHHHHHHHcCCCEEeecccc--chhHHHHHHHhhcCCCCCCcccc
Q 005804 161 WLDG--------RPK---QG---HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA--DDQAELFILRLSRNSGVLGLAGM 224 (676)
Q Consensus 161 ~~~~--------~~~---~g---n~E~~AR~iRY~~L~~~A~e~g~~~LatGHha--DDqaET~LmrL~RGsG~~GLaGm 224 (676)
..+. ... .+ .....+|.+-...+.++|++.|+++|++||+. +|+...-+ . +...
T Consensus 76 eef~~~v~~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf~~---~-------~~al 145 (421)
T 1vl2_A 76 REFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFEL---T-------YAAL 145 (421)
T ss_dssp HHHHHHTHHHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHH---H-------HHHH
T ss_pred HHHHHhhhhHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCeeCCCChHHHHH---H-------HHhc
Confidence 4321 010 11 22334788778889999999999999999997 57653111 0 0001
Q ss_pred cccccccccccccccccccCCCeEEEeeCCC-------CCHHHHHHHHHhCCCceee
Q 005804 225 AFSSQIFSSYAYSCHDDLKNHSILLVRPLLD-------FSKDDMYKICQGGNRDWVE 274 (676)
Q Consensus 225 ~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~-------lsK~EIr~y~~~~gLp~ve 274 (676)
...+.++.||++ ++|+||++|++++|+|+..
T Consensus 146 -------------------~p~~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~ 183 (421)
T 1vl2_A 146 -------------------NPNLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKV 183 (421)
T ss_dssp -------------------CTTSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCS
T ss_pred -------------------CCCCeEEcccCchhhccccCCHHHHHHHHHHcCCCccc
Confidence 113579999999 7999999999999999864
No 28
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.46 E-value=2.2e-13 Score=141.36 Aligned_cols=188 Identities=11% Similarity=0.035 Sum_probs=120.1
Q ss_pred hccCCCCCCCccccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEE
Q 005804 49 CKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAIT 127 (676)
Q Consensus 49 c~~~~~w~~~~~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~-g~~~~~~~~g~~~~L~aVh 127 (676)
-+|.++|+ +.-.++.....++..+.+.+ ..++|+||+|||+||++++.|++..... |... + ..+ .++++++
T Consensus 11 ~~~~~~~~--~~~~i~~~~~~L~~~l~~~g--~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~-~-~~~--~~v~av~ 82 (275)
T 1wxi_A 11 LGAKPQIN--AEEEIRRSVDFLKSYLQTYP--FIKSLVLGISGGQDSTLAGKLCQMAINELRLET-G-NES--LQFIAVR 82 (275)
T ss_dssp HTCCSCCC--HHHHHHHHHHHHHHHHHHST--TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHH-C-CTT--CEEEEEE
T ss_pred hCCCCCCC--HHHHHHHHHHHHHHHHHHcC--CCCCEEEECcCcHHHHHHHHHHHHHHHHhcccc-c-ccc--ceEEEEE
Confidence 57888888 44445555555666666543 1368999999999999999988876421 0000 0 000 1689999
Q ss_pred EECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECcccc----------CCCCCC-ChHHHHHHHHHHHHHHHHHHcCCCEE
Q 005804 128 VDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLD----------GRPKQG-HLQEAARDMRYRLFQKVCIQHQIGVL 195 (676)
Q Consensus 128 VDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~~~~----------~~~~~g-n~E~~AR~iRY~~L~~~A~e~g~~~L 195 (676)
+++|.+. +.+.++++|+.+|+ ++++++++..+ ..+... ..+....++|...+..+|.+.|+.+|
T Consensus 83 ~~~~~~~----~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvl 158 (275)
T 1wxi_A 83 LPYGVQA----DEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVV 158 (275)
T ss_dssp CCSSSCT----THHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEB
T ss_pred eCCCCcc----CHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEE
Confidence 9988532 45667888999999 99998876421 011000 12222335678888899999998888
Q ss_pred eeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--ee
Q 005804 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD--WV 273 (676)
Q Consensus 196 atGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp--~v 273 (676)
.|||..++ ..|- .... . .....+.||.+++|.||+++++.+|+| .+
T Consensus 159 gTgn~~E~---------~~Gy--~t~~--------------------g-d~~~~~~PL~~l~K~eVr~la~~lglp~~i~ 206 (275)
T 1wxi_A 159 GTDHAAEA---------ITGF--FTKY--------------------G-DGGTDINPLYRLNKRQGKQLLAALACPEHLY 206 (275)
T ss_dssp CCCCHHHH---------TTTC--SCTT--------------------T-TTCCSBCTTTTCCHHHHHHHHHHTTCCGGGT
T ss_pred ECccHHHH---------ccCc--cccc--------------------C-CCccceeeccCCCHHHHHHHHHHhCCcHhhc
Confidence 88876443 1221 1000 0 122468999999999999999999998 34
Q ss_pred eCCCCCC
Q 005804 274 EDPTNRS 280 (676)
Q Consensus 274 eDpSN~d 280 (676)
+.|...+
T Consensus 207 ~k~psa~ 213 (275)
T 1wxi_A 207 KKAPTAD 213 (275)
T ss_dssp SCC----
T ss_pred cCCCCCc
Confidence 5555444
No 29
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=99.46 E-value=2.6e-13 Score=140.50 Aligned_cols=152 Identities=11% Similarity=0.102 Sum_probs=103.8
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
++|+||+| |+||+||++|+.+. +. ++.++|+|||++ ..+..++++++|+++|++++++..+..
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~---~~-----------~i~vv~iDtg~~--~~et~~~v~~~~~~~gi~l~v~~~~~~ 117 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL---NR-----------NVKVFSLDTGRL--HPETYRFIDQVREHYGIAIDVLSPDPR 117 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH---CT-----------TCCEEEECCSCC--CHHHHHHHHHHHHHHTCCCEEECCCHH
T ss_pred CCEEEEee-cHHHHHHHHHHHHh---CC-----------CceEEEEeCCCC--CHHHHHHHHHHHHHHCCeEEEEeCCcc
Confidence 68999999 99999999999764 11 467899999994 577889999999999999998875521
Q ss_pred c----CCCCCC------ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccc
Q 005804 163 D----GRPKQG------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (676)
Q Consensus 163 ~----~~~~~g------n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~ 232 (676)
. ...... +....|+..+..-|.++.+ +++.+++||+.||..++ |. +++....
T Consensus 118 ~~~~~~~~~g~~~~~~~~~~~cc~~~K~~pl~r~l~--~~~~~itG~r~dds~~~------R~-------~~~~~~~--- 179 (275)
T 2goy_A 118 LLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLA--GVRAWATGQRRDQSPGT------RS-------QVAVLEI--- 179 (275)
T ss_dssp HHHHHHHHHCSCHHHHHCTHHHHHHHTHHHHHHHHH--TCSEEECCCCGGGTTSC------SC-------CCCSEEE---
T ss_pred CHHHHHHHhCCCCccccCHHHHHHHHHHHHHHHHHH--hcCchhcCchhhhhhhh------hh-------hCccccc---
Confidence 0 000000 1233444455555666665 46789999999995211 11 1221110
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
...+. ....++..++||++++++||.+|++++||||.
T Consensus 180 -d~~~~---~~~~g~~~i~PL~~wt~~dV~~Yi~~~~lp~~ 216 (275)
T 2goy_A 180 -DGAFS---TPEKPLYKFNPLSSMTSEEVWGYIRMLELPYN 216 (275)
T ss_dssp -CTTTC---CSSSCCEEECTTTTCCHHHHHHHHHHTTCCCC
T ss_pred -ccccc---cCCCCeEEEechHhCCHHHHHHHHHHhCCCCC
Confidence 00000 01235678999999999999999999999984
No 30
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.45 E-value=2.6e-13 Score=140.37 Aligned_cols=186 Identities=12% Similarity=0.026 Sum_probs=121.9
Q ss_pred hhccCCCCCCCccccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEE
Q 005804 48 FCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAI 126 (676)
Q Consensus 48 ~c~~~~~w~~~~~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~-g~~~~~~~~g~~~~L~aV 126 (676)
-.+|.++|+ +.-.++..+..++..+...+ .++|+||+|||+||+++++|+++.... |.. .+ ..+++++
T Consensus 9 ~~~~~~~~~--~~~~i~~~~~~L~d~v~~~g---~~~vvvgLSGGvDSsv~a~La~~a~~~lg~~-----~~-~~~v~av 77 (271)
T 1kqp_A 9 ELHVKPSID--PKQEIEDRVNFLKQYVKKTG---AKGFVLGISGGQDSTLAGRLAQLAVESIREE-----GG-DAQFIAV 77 (271)
T ss_dssp HHTCCSSCC--HHHHHHHHHHHHHHHHHHHT---CCEEEEECCSSHHHHHHHHHHHHHHHHHHHT-----TC-CCEEEEE
T ss_pred HhCCCCCCC--HHHHHHHHHHHHHHHHHHcC---CCCEEEECCCCHHHHHHHHHHHHHHHHhccc-----CC-CceEEEE
Confidence 368888898 44445555566666666543 358999999999999999988765421 000 00 0268999
Q ss_pred EEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECcccc-----------CCCCCC-ChHHHHHHHHHHHHHHHHHHcCCC
Q 005804 127 TVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLD-----------GRPKQG-HLQEAARDMRYRLFQKVCIQHQIG 193 (676)
Q Consensus 127 hVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~~~~-----------~~~~~g-n~E~~AR~iRY~~L~~~A~e~g~~ 193 (676)
++++|.+ .+.+.++++|+.+|+ ++++++++..+ ..+... ..+....++|..++..+|.+.|+.
T Consensus 78 ~~~~~~~----~d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~l 153 (271)
T 1kqp_A 78 RLPHGTQ----QDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLL 153 (271)
T ss_dssp ECCSSSC----TTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred EeCCCCC----CCHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCCE
Confidence 9998753 235667888999999 99988875321 111100 112222347778888999999988
Q ss_pred EEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCc--
Q 005804 194 VLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRD-- 271 (676)
Q Consensus 194 ~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp-- 271 (676)
+|.|||..++ ..|-. ... . .....+.||.+++|.||+++++.+|+|
T Consensus 154 vl~tgn~~E~---------~~Gy~--t~~--------------------g-d~~~~~~Pl~~l~K~eVr~la~~lglp~~ 201 (271)
T 1kqp_A 154 VLGTDHAAEA---------VTGFF--TKY--------------------G-DGGADLLPLTGLTKRQGRTLLKELGAPER 201 (271)
T ss_dssp EBCCCCHHHH---------TTTCS--CTT--------------------T-TTCCSBCTTTTCCHHHHHHHHHHTTCCTH
T ss_pred EEECccHHHh---------ccCCc--ccc--------------------c-cccccccccccCCHHHHHHHHHHcCCCHh
Confidence 8888775332 12211 000 0 122468899999999999999999998
Q ss_pred eeeCCCCCC
Q 005804 272 WVEDPTNRS 280 (676)
Q Consensus 272 ~veDpSN~d 280 (676)
.++.|...+
T Consensus 202 i~~k~psa~ 210 (271)
T 1kqp_A 202 LYLKEPTAD 210 (271)
T ss_dssp HHHSCCBCC
T ss_pred hccCCCCcc
Confidence 345555555
No 31
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=99.43 E-value=1.3e-13 Score=145.10 Aligned_cols=122 Identities=9% Similarity=0.032 Sum_probs=91.8
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhc-------CC
Q 005804 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM-------GI 152 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~L-------GI 152 (676)
....|++|++|| +||+++++++.+ .|+ ++.++|+|++. .+.+.++++|+.+ ++
T Consensus 177 g~~~kvlvllSG-vDS~vaa~ll~~---~G~-----------~v~~v~~~~~~-----~~~~~a~~~a~~l~~~~~~~~i 236 (307)
T 1vbk_A 177 GTEGRMIGILHD-ELSALAIFLMMK---RGV-----------EVIPVYIGKDD-----KNLEKVRSLWNLLKRYSYGSKG 236 (307)
T ss_dssp TTTCEEEEECSS-HHHHHHHHHHHH---BTC-----------EEEEEEESCSS-----HHHHHHHHHHHHHHTTCTTSCC
T ss_pred CCCCcEEEEEeC-CcHHHHHHHHHh---CCC-----------eEEEEEEEECH-----HHHHHHHHHHHHHhhhccCCCC
Confidence 445799999999 999999999864 443 79999999653 3466778888887 89
Q ss_pred eEEEEE-CccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhH-HHHHHHhhcCCCCCCcccccccccc
Q 005804 153 RCEIVR-CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA-ELFILRLSRNSGVLGLAGMAFSSQI 230 (676)
Q Consensus 153 ~~~iv~-~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa-ET~LmrL~RGsG~~GLaGm~~v~~l 230 (676)
++++++ +... + ++|+++|+++|+||||++|.+ +|..++.. ..
T Consensus 237 ~~~vv~~~~~~--------------------~-~~A~~~ga~~I~tG~~~~~~~~qt~~l~~~-----------~~---- 280 (307)
T 1vbk_A 237 FLVVAESFDRV--------------------L-KLIRDFGVKGVIKGLRPNDLNSEVSEITED-----------FK---- 280 (307)
T ss_dssp CCEEESSHHHH--------------------H-HHHHHHTCCEEECCCCGGGCCTTCHHHHHH-----------HH----
T ss_pred cEEEeCCCHHH--------------------H-HHHHHcCCCEEEECcccchhccccHHHhhh-----------cc----
Confidence 998886 4211 1 788999999999999998764 33322111 11
Q ss_pred cccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCC
Q 005804 231 FSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNR 270 (676)
Q Consensus 231 f~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gL 270 (676)
.....++|||..++|+||+++|++.|+
T Consensus 281 -------------~~~~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 281 -------------MFPVPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp -------------HCSSCEECHHHHSCHHHHHHHHHHHTC
T ss_pred -------------CcCCeEEEccCCCCHHHHHHHHHHcCC
Confidence 113469999999999999999999885
No 32
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.39 E-value=8.7e-13 Score=137.39 Aligned_cols=191 Identities=14% Similarity=0.045 Sum_probs=125.6
Q ss_pred hhhhhccCCCCCCCccccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcE
Q 005804 45 IRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGL 123 (676)
Q Consensus 45 ~~~~c~~~~~w~~~~~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~-g~~~~~~~~g~~~~L 123 (676)
+..+|+|.+.|+ +.-.++..+..++..+.+.+ .++++||+|||+||++++.++++.... |.. ..+...++
T Consensus 8 ~~~~~~~~~~~~--~~~~i~~~v~~L~d~l~~~g---~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~----~~~~~~~v 78 (279)
T 3q4g_A 8 IREEMRVLPSID--PQFEIERRVAFIKRKLTEAR---YKSLVLGISGGVDSTTCGRLAQLAVEELNQQ----HNTTEYQF 78 (279)
T ss_dssp HHHHHTCCSSCC--HHHHHHHHHHHHHHHHHHHT---CCEEEEECCSSHHHHHHHHHHHHHHHHHHHH----TTCSCCEE
T ss_pred HHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHcC---CCCEEEEccCCHHHHHHHHHHHHHHHHhCcc----cccCCceE
Confidence 467899999998 55556666666677777654 368999999999999999987655321 000 00001278
Q ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCC-eEEEEECccccCC--------------C-CCCC-----hHHHHHHHHHHH
Q 005804 124 LAITVDHGLREESKEEANIVSHRVSDMGI-RCEIVRCDWLDGR--------------P-KQGH-----LQEAARDMRYRL 182 (676)
Q Consensus 124 ~aVhVDHGLR~eS~~Eae~V~~l~~~LGI-~~~iv~~~~~~~~--------------~-~~gn-----~E~~AR~iRY~~ 182 (676)
+++++++|-+. +.+.++++|+.+|+ ++++++++..+.. . .... .+....++|...
T Consensus 79 ~av~~p~~~~~----~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~ 154 (279)
T 3q4g_A 79 IAVRLPYGEQK----DEDEAQLALSFIRPTHSVSVNIKAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVA 154 (279)
T ss_dssp EEEECCSSSCS----CHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCChH----HHHHHHHHHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHH
Confidence 99999988532 24567889999999 8999887642210 0 0111 234446778899
Q ss_pred HHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHH
Q 005804 183 FQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMY 262 (676)
Q Consensus 183 L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr 262 (676)
+..+|.++|+-+|.|||- .|.. .| .....| + +...+.||.+++|.||+
T Consensus 155 Ly~~A~~~g~lVlgTgn~----sE~~-----~G--y~TkyG--------------------D-~~~di~Pl~dl~Kt~Vr 202 (279)
T 3q4g_A 155 QYEIAGYVGGLVLGTDHS----AENI-----TG--FYTKFG--------------------D-GACDLAPLFGLNKRQVR 202 (279)
T ss_dssp HHHHHHHHTEEEBCCCCH----HHHH-----HT--CSCTTT--------------------T-TCCSBCTTTTCCHHHHH
T ss_pred HHHHHHHCCCEEecCccH----Hhhh-----cc--chhhcC--------------------C-cccceeecCCCcHHHHH
Confidence 999999998755555543 2322 12 111111 1 11357899999999999
Q ss_pred HHHHhCCCc--eeeCCCCCC
Q 005804 263 KICQGGNRD--WVEDPTNRS 280 (676)
Q Consensus 263 ~y~~~~gLp--~veDpSN~d 280 (676)
++++.+|+| .++.|...+
T Consensus 203 ~LA~~lgiP~~i~~K~PSa~ 222 (279)
T 3q4g_A 203 LLAKTLGAPEQLVYKTPTAD 222 (279)
T ss_dssp HHHHHTTCCHHHHTCCCSCC
T ss_pred HHHHHhCCcHHHhcCCCCCC
Confidence 999999998 345555544
No 33
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=99.39 E-value=4.1e-12 Score=133.73 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=101.6
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCC------CC-CCCC-CCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCe
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGF------NQ-NGEA-GEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIR 153 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~------~~-~~~~-~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~ 153 (676)
+++|+||+|||+||+||++|+.+...... .. .... .....++.++|||.|. +..+..+++.++++++|++
T Consensus 53 ~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~--~fpet~~fv~~~~~~ygl~ 130 (306)
T 2wsi_A 53 NGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE--TFPTLENFVLETSERYCLS 130 (306)
T ss_dssp SSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT--CCHHHHHHHHHHHHHTTEE
T ss_pred cCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC--CCHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999987532100 00 0000 0001268899999997 7889999999999999999
Q ss_pred EEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHH-cCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccc
Q 005804 154 CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQ-HQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFS 232 (676)
Q Consensus 154 ~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e-~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~ 232 (676)
++++..++.. ...+.+. +.++++. -+.+.|++||..+|.. + .++..+....
T Consensus 131 l~v~~~~~~~----~~~l~~~--------~~~~~k~~p~~~aii~G~Rrdds~---------~---r~l~~~~~~d---- 182 (306)
T 2wsi_A 131 LYESQRQSGA----SVNMADA--------FRDFIKIYPETEAIVIGIRHTDPF---------G---EALKPIQRTD---- 182 (306)
T ss_dssp EEECCC---------CCHHHH--------HHHHHHHCTTCCEEECCCCCCSSS---------C---CCCCSEEECC----
T ss_pred EEEEeCCccc----cccHHHH--------HHHHHhhCCCCcEEEEEEeccccc---------c---cccCceeccC----
Confidence 9887654321 1223332 3344555 3688999999999943 1 1222211100
Q ss_pred cccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 233 ~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
....++..++||++++++||+.|++.+||||.
T Consensus 183 ---------~~~p~~~ri~PL~dWt~~DVw~Yi~~~~lpy~ 214 (306)
T 2wsi_A 183 ---------SNWPDFMRLQPLLHWDLTNIWSFLLYSNEPIC 214 (306)
T ss_dssp ---------TTSCSCEEECTTTTCCHHHHHHHHHHHCCCBC
T ss_pred ---------CCCCCcEEEeChHHCCHHHHHHHHHHcCCCCC
Confidence 00113567999999999999999999999993
No 34
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.29 E-value=5.2e-12 Score=143.57 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHH
Q 005804 63 MTKYREAFSRRMAMAG-LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEAN 141 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~~-i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae 141 (676)
.+++.+.+...+.+.. -...++|+||+|||+||+++++|+.+..+. .++++++++++. .+..|.+
T Consensus 306 ~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~------------~~v~~v~m~~~~--~~~~~~~ 371 (590)
T 3n05_A 306 DEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA------------QNVYGVSMPSKY--SSDHSKG 371 (590)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG------------GGEEEEECCCSS--CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc------------ccEEEEEECCCC--CCHHHHH
Confidence 4555555544444332 123468999999999999999998775431 178999999886 4678899
Q ss_pred HHHHHHHhcCCeEEEEECccccCC-----CCCC-ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcC
Q 005804 142 IVSHRVSDMGIRCEIVRCDWLDGR-----PKQG-HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215 (676)
Q Consensus 142 ~V~~l~~~LGI~~~iv~~~~~~~~-----~~~g-n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RG 215 (676)
.++++|+.+||++++++++..+.. .... ..+....++|..++..+|.+.|+.+|.|| |+++.+ .|
T Consensus 372 ~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~--------~G 442 (590)
T 3n05_A 372 DAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELA--------VG 442 (590)
T ss_dssp HHHHHHHHHTCEEEECCSHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHH--------HT
T ss_pred HHHHHHHHcCCcEEEEEChHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHh--------cC
Confidence 999999999999999987643210 0001 12344456788899999999999999999 455432 12
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005804 216 SGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (676)
Q Consensus 216 sG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (676)
.. ... ......+.||.+++|.||+++++.+|
T Consensus 443 y~--t~~---------------------gd~~~~~~Pl~~l~K~eVr~la~~lg 473 (590)
T 3n05_A 443 YS--TLY---------------------GDSVGAYGPIKDVYKTSIFRLAEWRN 473 (590)
T ss_dssp CC--CSS---------------------CTTSCSBCTTTTSCHHHHHHHHHHHH
T ss_pred ch--hhc---------------------CCCccceeecCCCcHHHHHHHHHHhC
Confidence 11 000 01124688999999999999999987
No 35
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.23 E-value=4e-11 Score=125.21 Aligned_cols=179 Identities=15% Similarity=0.041 Sum_probs=113.6
Q ss_pred hhhccCCCCCCCccccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEE
Q 005804 47 LFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLA 125 (676)
Q Consensus 47 ~~c~~~~~w~~~~~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~-g~~~~~~~~g~~~~L~a 125 (676)
.-++..+.+. ..-.++..+..++..+.+.++ ++++||+|||+||+++++|+..+... |. .+...++++
T Consensus 16 ~~~~~~~~~~--~~~~i~~~v~~L~d~l~~~g~---~~vvvglSGGiDSal~a~La~~A~daLG~------~~~~~~via 84 (285)
T 3dpi_A 16 AELHVSPTFD--ARDEAERRIGFVADYLRTAGL---RACVLGISGGIDSSTAGRLAQLAVERLRA------SGYDARFVA 84 (285)
T ss_dssp HHTTCCSSCC--HHHHHHHHHHHHHHHHHHHTC---CEEEEECCSSHHHHHHHHHHHHHHHHHHH------TTCCCEEEE
T ss_pred HHhCCCCCCC--HHHHHHHHHHHHHHHHHHcCC---CcEEEEccCChhHHHHHHHHHHHHHHhcc------cCcccEEEE
Confidence 3466666555 333444555555666666543 68999999999999998887654321 00 011125788
Q ss_pred EEEECCCCCCcHHHHHHHHHHHHhcC-CeEEEEECccccC----------CCCCC------ChHHHHHHHHHHHHHHHHH
Q 005804 126 ITVDHGLREESKEEANIVSHRVSDMG-IRCEIVRCDWLDG----------RPKQG------HLQEAARDMRYRLFQKVCI 188 (676)
Q Consensus 126 VhVDHGLR~eS~~Eae~V~~l~~~LG-I~~~iv~~~~~~~----------~~~~g------n~E~~AR~iRY~~L~~~A~ 188 (676)
+++.++- ..+.+.++++|+.+| ++++++++...+. ....+ ..+....++|..++..+|.
T Consensus 85 v~~p~~~----~~~~~dA~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~ 160 (285)
T 3dpi_A 85 MRLPYGA----QHDEADARRALAFVRADETLTVDVKPAADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAG 160 (285)
T ss_dssp EECCSCC-------CHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCC----HHHHHHHHHHHHHcCCCcEEEEEChHHHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHH
Confidence 8888763 335566788899999 7999998754321 00000 1234457789999999999
Q ss_pred HcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhC
Q 005804 189 QHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGG 268 (676)
Q Consensus 189 e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~ 268 (676)
++|+-+|.|||-.....-.+ ...|. +...+.||.+++|.||+++++.+
T Consensus 161 ~~g~lVlgTgn~sE~~~Gy~---T~~GD-----------------------------~~~~~~Pl~~l~K~eV~~la~~l 208 (285)
T 3dpi_A 161 ARNGVVIGTDHAAESVMGFF---TKFGD-----------------------------GGADVLPLAGLTKRRVRALARML 208 (285)
T ss_dssp HTTEEEBCCCCHHHHHHHHH---HCCCC-----------------------------CCCSBCTTTTCCHHHHHHHHHHT
T ss_pred HCCCEEEeCccHHhhhCCcc---cccCC-----------------------------CceeEeeecCCcHHHHHHHHHHc
Confidence 99885555555433221110 11111 12368999999999999999999
Q ss_pred CCce
Q 005804 269 NRDW 272 (676)
Q Consensus 269 gLp~ 272 (676)
|+|.
T Consensus 209 g~p~ 212 (285)
T 3dpi_A 209 GADE 212 (285)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 9983
No 36
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=98.86 E-value=5.4e-09 Score=119.92 Aligned_cols=172 Identities=15% Similarity=0.020 Sum_probs=102.9
Q ss_pred HHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHH-------hhhhCCCCCCC-----CCCCCCC----------------c
Q 005804 71 SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTA-------GWKTGGFNQNG-----EAGEFID----------------G 122 (676)
Q Consensus 71 ~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~-------~~~~~g~~~~~-----~~~g~~~----------------~ 122 (676)
+..+++. ..++|+||+|||+||+++|.|++ +..+... ... ....+.. -
T Consensus 295 ~d~~~~~---g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (634)
T 3ilv_A 295 FDYMRKS---RSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTA-FLQKSNMETLFDLPALQHLPFEEQAKKITAVF 370 (634)
T ss_dssp HHHHHHT---TCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHH
T ss_pred HHHHHHh---CCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchh-hhhhhhcccccccccccccccccchhHhhhhe
Confidence 4445553 34689999999999999888743 2222100 000 0000000 0
Q ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccccC-----------CCCC---C--ChHHHHHHHHHHHHHHH
Q 005804 123 LLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDG-----------RPKQ---G--HLQEAARDMRYRLFQKV 186 (676)
Q Consensus 123 L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~-----------~~~~---g--n~E~~AR~iRY~~L~~~ 186 (676)
+++|++.... .+..+.+.++++|+.+||++++++++..+. .+.. . ..+....++|...+..+
T Consensus 371 ~~~v~m~~~~--ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R~~~l~~~ 448 (634)
T 3ilv_A 371 LTTAYQSTRN--SGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKDDITLQNIQARGRAPIIWML 448 (634)
T ss_dssp EEEEEEECTT--CCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHHHHH
T ss_pred eeeeecCCCC--CCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccccCcchhhhhhHHHHHHHHHHH
Confidence 7888887433 455677778899999999999998864321 1101 1 12344456778889999
Q ss_pred HHHcCCCEEeeccccchhHHHHHHHhhcCCCCCCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHH
Q 005804 187 CIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQ 266 (676)
Q Consensus 187 A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~ 266 (676)
|.+.|+.+|.||| ..|.. .|.. .+.| + ....+.||.+++|+||+++++
T Consensus 449 A~~~g~lvlgTgn----ksE~~-----~Gy~--T~yg--------------------D-~~~~~~Pl~~l~KteVr~la~ 496 (634)
T 3ilv_A 449 TNVKQALLITTSN----RSEGD-----VGYA--TMDG--------------------D-TAGGIAPIAGVDKDFIRSWLR 496 (634)
T ss_dssp HHHHTCEEBCCCC----HHHHH-----TTCS--CTTT--------------------T-TCSSBBTTTTSCHHHHHHHHH
T ss_pred HHhcCCEEeccCc----hhhHh-----hCCc--cccC--------------------C-cccCCcccCCCcHHHHHHHHH
Confidence 9999997777775 33432 2321 1111 0 112478999999999999999
Q ss_pred hC----CCc----eeeCCCCCC
Q 005804 267 GG----NRD----WVEDPTNRS 280 (676)
Q Consensus 267 ~~----gLp----~veDpSN~d 280 (676)
.+ |+| .++.|...+
T Consensus 497 ~l~~~~glp~l~~i~~k~pSae 518 (634)
T 3ilv_A 497 WAEKNRNQHGLHIVNKLAPTAE 518 (634)
T ss_dssp HHHHHSCCGGGSSCC-------
T ss_pred HHHHcCCCchHHHHcCCCCCcC
Confidence 98 898 544444333
No 37
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.78 E-value=1.6e-08 Score=116.87 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=96.0
Q ss_pred HHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhC-CCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHh
Q 005804 71 SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTG-GFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSD 149 (676)
Q Consensus 71 ~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~-g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~ 149 (676)
+..+.+.+ .++|+||+|||+||++++.++++.... |.+ ..++++|+++... .+.++.+.++++|+.
T Consensus 353 ~~~l~~~g---~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~--------~~~v~~v~m~~~~--~~~~~~~~A~~la~~ 419 (680)
T 3sdb_A 353 EQRLRALD---YPKVVIGVSGGLDSTHALIVATHAMDREGRP--------RSDILAFALPGFA--TGEHTKNNAIKLARA 419 (680)
T ss_dssp HHHHHHTT---SCEEEEECCSSHHHHHHHHHHHHHHHHTTCC--------GGGEEEEECCC----------CHHHHHHHH
T ss_pred HHHHHHcC---CCcEEEEecCCccHHHHHHHHHHHHHHhCCC--------CceEEEEEECCCC--CCHHHHHHHHHHHHH
Confidence 44444432 368999999999999988887765422 100 1278999999765 345677788999999
Q ss_pred cCCeEEEEECccccC------C-CCC-C------ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcC
Q 005804 150 MGIRCEIVRCDWLDG------R-PKQ-G------HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRN 215 (676)
Q Consensus 150 LGI~~~iv~~~~~~~------~-~~~-g------n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RG 215 (676)
+|+++++++++..+. . +.. + ..+....++|..++..+|.+.|+.++.||| ..|..+ |
T Consensus 420 lgi~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTgn----~sE~~~-----G 490 (680)
T 3sdb_A 420 LGVTFSEIDIGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGD----LSELAL-----G 490 (680)
T ss_dssp HTCEEEECCCHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECCC----HHHHHH-----T
T ss_pred cCCCEEEEECHHHHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCCc----HHhHhc-----C
Confidence 999999998864221 0 100 1 123444567888899999999885555553 344432 2
Q ss_pred CCCCCcc-cccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005804 216 SGVLGLA-GMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (676)
Q Consensus 216 sG~~GLa-Gm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (676)
-. .+. | + ....+.||.+++|.||+++++.++
T Consensus 491 y~--T~~~g--------------------D-~~~~~~Pl~~l~K~eVr~lar~l~ 522 (680)
T 3sdb_A 491 WS--TYGVG--------------------D-QMSHYNVNAGVPKTLIQHLIRWVI 522 (680)
T ss_dssp CS--CCSSS--------------------T-TCCSEETTTTSCHHHHHHHHHHHH
T ss_pred ee--eccCC--------------------C-ccccccccCCCcHHHHHHHHHHHH
Confidence 21 111 1 1 112368999999999999998763
No 38
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=98.55 E-value=3.1e-07 Score=93.52 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=90.5
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCc----HHHHHHHHHHHHhcCCeEEEEE
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREES----KEEANIVSHRVSDMGIRCEIVR 158 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS----~~Eae~V~~l~~~LGI~~~iv~ 158 (676)
.|+++++|||+||+++++++.+ .|+ ++.+++..++.+.++ ..+.+.++++|+.+|||+++++
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~---~G~-----------eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~ 70 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIK---NRF-----------SVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGF 70 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH---TTC-----------EEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEecCcHHHHHHHHHHHH---cCC-----------eEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEE
Confidence 5899999999999999988754 333 788888777754221 1234567889999999999998
Q ss_pred CccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc-hhHHHHHHHhhcCCCCCCccccccccccccccccc
Q 005804 159 CDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD-DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYS 237 (676)
Q Consensus 159 ~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD-DqaET~LmrL~RGsG~~GLaGm~~v~~lf~~~~~~ 237 (676)
+.+.. ....+ -+.+..++.|++.+++|--.. +|... .-+.+.
T Consensus 71 ~~g~~----~~e~e---------~l~~~l~~~~i~~vv~Gdi~s~yqr~r-~e~vc~----------------------- 113 (237)
T 3rjz_A 71 TQGEK----EKEVE---------DLKRVLSGLKIQGIVAGALASKYQRKR-IEKVAK----------------------- 113 (237)
T ss_dssp C----------CHH---------HHHHHHTTSCCSEEECC---CCSHHHH-HHHHHH-----------------------
T ss_pred CCCCc----hHHHH---------HHHHHHHhcCCcEEEECCcchHHHHHH-HHHHHH-----------------------
Confidence 75421 00122 233344455999999998764 44332 222222
Q ss_pred ccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCceeeCCCC
Q 005804 238 CHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTN 278 (676)
Q Consensus 238 ~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~veDpSN 278 (676)
+-++..+.||...+..++.+-.-+.|+..+.-..+
T Consensus 114 ------~~gl~~~~PLW~~d~~~Ll~e~i~~G~~aiiv~v~ 148 (237)
T 3rjz_A 114 ------ELGLEVYTPAWGRDAKEYMRELLNLGFKIMVVGVS 148 (237)
T ss_dssp ------HTTCEEECSSSSCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred ------HcCCEEEccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 23457899999999999988888899888665554
No 39
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=98.55 E-value=1.5e-06 Score=91.56 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=94.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCC-------CCCCCCCCC-CCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeE
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGF-------NQNGEAGEF-IDGLLAITVDHGLREESKEEANIVSHRVSDMGIRC 154 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~-------~~~~~~~g~-~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~ 154 (676)
+++++++|||+||+||++|+.+.....+ .......+. ...+-++|||.|. .-.+-.+++.++++++|+++
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~--~FpET~ef~d~~~~~ygL~L 136 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDD--TFKTLENFIEETSLRYSLSL 136 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTT--CCHHHHHHHHHHHHHTTEEE
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCC--CCHHHHHHHHHHHHHhCCcE
Confidence 6799999999999999999977531100 000000000 0256789999998 66788899999999999998
Q ss_pred EEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHc-CCCEEeeccccchhHHHHHHHhhcCCCCCCccccccccccccc
Q 005804 155 EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH-QIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSS 233 (676)
Q Consensus 155 ~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~-g~~~LatGHhaDDqaET~LmrL~RGsG~~GLaGm~~v~~lf~~ 233 (676)
++...+. ..... +.+.++.+.. +++.+++|--.+|- + |.. ++.+. .
T Consensus 137 ~v~~p~~------~~~~~--------~~cc~~~K~~P~~~AwitG~RR~e~--~------Ra~-------l~~~e----~ 183 (308)
T 3fwk_A 137 YESDRDK------CETMA--------EAFETFLQVFPETKAIVIGIRHTDP--F------GEH-------LKPIQ----K 183 (308)
T ss_dssp EECCTTS------CCCHH--------HHHHHHHHHCTTCCEEECCCCTTST--T------CTT-------CCSEE----E
T ss_pred EEeCCCC------CHHHH--------HHHHHHHHhCCCCCEEEEEeecCCc--c------cCC-------CCeee----c
Confidence 7764321 11122 2344444555 68899999877741 1 221 22110 0
Q ss_pred ccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCCCcee
Q 005804 234 YAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWV 273 (676)
Q Consensus 234 ~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~gLp~v 273 (676)
....-.++.-+.||++.+..||.+|.++++|||.
T Consensus 184 ------~d~~w~~~iKVnPL~dWT~~DVW~YI~~~~LPyn 217 (308)
T 3fwk_A 184 ------TDANWPDFYRLQPLLHWNLANIWSFLLYSNEPIC 217 (308)
T ss_dssp ------CCTTSCSCEEECTTTTCCHHHHHHHHHHHTCCCC
T ss_pred ------cCCCCCCeEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 0001124556899999999999999999999984
No 40
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.27 E-value=4.8e-06 Score=94.12 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHH
Q 005804 61 TDMTKYREAFSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEA 140 (676)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Ea 140 (676)
...+++++.+.+.+... +....+|+|++|||+||++++.++++..............|..++.++++... .+ .|.
T Consensus 206 ~~~~~lr~~L~~aV~~r-l~sdvpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~---~~-~E~ 280 (553)
T 1ct9_A 206 TDKNELRQALEDSVKSH-LMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP---GS-PDL 280 (553)
T ss_dssp CCHHHHHHHHHHHHHHH-TCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST---TC-HHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCC---CC-cHH
Confidence 34566777777766654 33457899999999999999999876533210000000000002567777653 22 688
Q ss_pred HHHHHHHHhcCCeEEEEECccccCCC---------CCCCh-HHHHHHHHHHHHHHHHHHcCCCEEeeccccchhH
Q 005804 141 NIVSHRVSDMGIRCEIVRCDWLDGRP---------KQGHL-QEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (676)
Q Consensus 141 e~V~~l~~~LGI~~~iv~~~~~~~~~---------~~gn~-E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa 205 (676)
+.+++.|+.+|++|+.+.++...... ...++ ...+. +...++.+.+++.|+++|++||.+|++.
T Consensus 281 ~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~l~~~a~~~g~~vvLsG~GaDElf 354 (553)
T 1ct9_A 281 KAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRAS-TPMYLMSRKIKAMGIKMVLSGEGSDEVF 354 (553)
T ss_dssp HHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHTTCCEEECCTTHHHHH
T ss_pred HHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCcccchHH-HHHHHHHHHHHHcCCeEEEECCCchhcc
Confidence 89999999999999999876432100 01111 11122 2233677788899999999999999854
No 41
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.19 E-value=4.3e-06 Score=93.70 Aligned_cols=125 Identities=13% Similarity=0.036 Sum_probs=81.0
Q ss_pred cHHHHHHHHHHHHHHc---CCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHH
Q 005804 62 DMTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138 (676)
Q Consensus 62 ~~~~~~~~~~~~i~~~---~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~ 138 (676)
..++..+.+++.+.++ .+..+.+|++++|||+||++++.++++.. . ++.+++|.+.- ..
T Consensus 218 ~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~-~-------------~v~tfti~~~~----~~ 279 (513)
T 1jgt_A 218 PEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA-G-------------ELDTVSMGTDT----SN 279 (513)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH-S-------------SCEEEEEECSS----CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC-C-------------CceEEEcCCCC----CC
Confidence 3455555554444332 23445789999999999999999987653 1 35677887642 35
Q ss_pred HHHHHHHHHHhcCCeEEEEECccccCCC---------CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhH
Q 005804 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP---------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (676)
Q Consensus 139 Eae~V~~l~~~LGI~~~iv~~~~~~~~~---------~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa 205 (676)
|.+.++++|+.+|++++++.++...... ...++...+..+-..++.+.+ +.|++++++||.+|+..
T Consensus 280 E~~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~GaDElf 354 (513)
T 1jgt_A 280 EFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPL 354 (513)
T ss_dssp CHHHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcCCCEEEeCCChhhcc
Confidence 6788999999999999999886532100 001122211112223455555 67899999999999864
No 42
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.15 E-value=3.3e-06 Score=94.36 Aligned_cols=125 Identities=13% Similarity=0.048 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHHHHHc---CCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHH
Q 005804 62 DMTKYREAFSRRMAMA---GLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138 (676)
Q Consensus 62 ~~~~~~~~~~~~i~~~---~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~ 138 (676)
..++..+.+++.+.++ .+....+|++++|||+||++++.++++.. .++.++++.+.- ..
T Consensus 215 ~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~~--------------~~~~~~t~~~~~----~~ 276 (503)
T 1q15_A 215 PREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRHF--------------KKLNTYSIGTEL----SN 276 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTTC--------------SEEEEEEEEETT----BC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHhC--------------CCcEEEEEeCCC----cc
Confidence 4555555555544432 13445789999999999999998875421 157788887642 24
Q ss_pred HHHHHHHHHHhcCCeEEEEECccccCCC---------CCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhH
Q 005804 139 EANIVSHRVSDMGIRCEIVRCDWLDGRP---------KQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQA 205 (676)
Q Consensus 139 Eae~V~~l~~~LGI~~~iv~~~~~~~~~---------~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqa 205 (676)
|.+.++++|+.+|+++++++++...... ...++....-.+...++.+.| +.|+.++++|+.+|+..
T Consensus 277 E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~~~~VvltG~GaDElf 351 (503)
T 1q15_A 277 EFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNVYRQA-QGQVSCMLTGYGSDLLF 351 (503)
T ss_dssp CHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-BTTBSEEECCTTHHHHH
T ss_pred HHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHH-HCCCCEEEeCCChhhhc
Confidence 6788899999999999999876431100 011122222223333556666 57899999999999864
No 43
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=97.84 E-value=0.00019 Score=81.42 Aligned_cols=150 Identities=13% Similarity=0.173 Sum_probs=98.8
Q ss_pred HHHHHHcCCCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhc
Q 005804 71 SRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDM 150 (676)
Q Consensus 71 ~~~i~~~~i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~L 150 (676)
+..+.+.++ ++++|++|||.||++++.++.+..+. .+++++++-.. ..|+...+.++++|+.+
T Consensus 292 ~dy~~k~g~---~~~vlglSGGiDSal~~~la~~alg~------------~~v~~v~mp~~--~ts~~t~~~a~~la~~l 354 (565)
T 4f4h_A 292 RDYIGKNGF---PGAIIGLSGGVDSALVLAVAVDALGA------------ERVRAVMMPSR--YTAGISTTDAADMARRV 354 (565)
T ss_dssp HHHHHHTTC---CCEEEECCSSHHHHHHHHHHHHHHCG------------GGEEEEECCCT--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC---CcEEEecCCCccHHHHHHHHHHHhCC------------ccEEEEecccc--ccccchHHHHHHHHHHh
Confidence 445555443 67999999999999999888776543 16777776443 36777778888999999
Q ss_pred CCeEEEEECcccc-------CCC---CCC--ChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHHHHhhcCCCC
Q 005804 151 GIRCEIVRCDWLD-------GRP---KQG--HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGV 218 (676)
Q Consensus 151 GI~~~iv~~~~~~-------~~~---~~g--n~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~LmrL~RGsG~ 218 (676)
|+.++.++++... ... ... ..|..--++|-.+|..+|.+.|. +++|+- |..|.. .|-
T Consensus 355 g~~~~~i~i~~~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~--lvlgTg--n~sE~a-----~Gy-- 423 (565)
T 4f4h_A 355 GVRYDEIAIAPMFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGS--IVLTTG--NKSEMA-----VGY-- 423 (565)
T ss_dssp TCEEEECCCHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCC--EEEECC--CHHHHH-----HTC--
T ss_pred CCceeeeecchHHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCC--cccCCC--chhhHh-----hcc--
Confidence 9999998875311 011 111 13444456777889999999987 444442 455632 221
Q ss_pred CCcccccccccccccccccccccccCCCeEEEeeCCCCCHHHHHHHHHhCC
Q 005804 219 LGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN 269 (676)
Q Consensus 219 ~GLaGm~~v~~lf~~~~~~~~~~~~~~~i~IIRPLL~lsK~EIr~y~~~~g 269 (676)
..+-| ++ .--+-|+-+++|.+|+.+++..+
T Consensus 424 ~T~~G--------------------d~-~~~~~pi~~l~Kt~v~~l~~~~~ 453 (565)
T 4f4h_A 424 CTLYG--------------------DM-AGGFAVIKDIAKTLVYRLCRYRN 453 (565)
T ss_dssp SCTTT--------------------TT-CSSEETTTTCCHHHHHHHHHHHH
T ss_pred ccccC--------------------Cc-ccCchhccCccHHHHHHHHHHHh
Confidence 11111 11 12467999999999999998654
No 44
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=95.65 E-value=0.0017 Score=64.12 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=35.4
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
++|++.|..+|+++.++|+++.+++. ++..++ +++|+||
T Consensus 139 ~~H~~~v~~l~~~~~vlA~s~d~~i~--ai~~~~~~i~gvQf 178 (212)
T 2a9v_A 139 ENHNDEIINLPDDFTLAASSATCQVQ--GFYHKTRPIYATQF 178 (212)
T ss_dssp EEEEEEEESCCTTEEEEEECSSCSCS--EEEESSSSEEEESS
T ss_pred eEhhhhHhhCCCCcEEEEEeCCCCEE--EEEECCCCEEEEEe
Confidence 36999999999999999999999988 888875 8999999
No 45
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=93.50 E-value=0.041 Score=55.68 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=35.7
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccC-C-C-eeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCR-I-P-FTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~q~ 41 (676)
+.|++.|.++|+++.++|+++.+.+. ++..+ + + ++|+||
T Consensus 176 ~~H~~~v~~l~~g~~v~a~s~dg~ie--ai~~~~~~~~~~gvQf 217 (254)
T 3fij_A 176 SLHHQFIKKLAPSFKVTARTADGMIE--AVEGDNLPSWYLGVQW 217 (254)
T ss_dssp CBCSCEESSCCSSEEEEEEETTCCEE--EEEESSCSSCEEEESS
T ss_pred EeccchhhccCCCcEEEEEeCCCcEE--EEEecCCCCeEEEEEc
Confidence 46999999999999999999999988 99887 6 4 999999
No 46
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=93.07 E-value=0.025 Score=57.67 Aligned_cols=38 Identities=5% Similarity=-0.206 Sum_probs=35.2
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
++|+|.| .+|+++.++|+|+.+++. ++..+++++|+||
T Consensus 138 ~~H~~~v-~lp~~~~vlA~s~~~~~~--a~~~~~~~~GvQf 175 (250)
T 3m3p_A 138 EWHYQTF-SIPPGAVHILRSEHCANQ--AYVLDDLHIGFQC 175 (250)
T ss_dssp EEEEEEE-CCCTTEEEEEEETTEEEE--EEEETTTEEEESS
T ss_pred EEcccee-ecCCCCEEEEEeCCCCEE--EEEECCeeEEEEe
Confidence 4699999 899999999999999999 8888778999999
No 47
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=92.82 E-value=0.032 Score=54.00 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=36.0
Q ss_pred CCCcccccccCCcceEeeec-cCccccccccccCC-CeeEeecc
Q 005804 1 MARGSIVSAQSRTTSTLLST-LVARLSLSSVKCRI-PFTRSQYL 42 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~q~~ 42 (676)
+.|++.|..+|+++.++|+| +.+++. ++..++ +++|+||-
T Consensus 134 ~~H~~~v~~l~~~~~vla~s~~~g~i~--a~~~~~~~~~gvQfH 175 (195)
T 1qdl_B 134 RYHSLVVDEVHRPLIVDAISAEDNEIM--AIHHEEYPIYGVQFH 175 (195)
T ss_dssp EEEEEEEECCCTTEEEEEEESSSCCEE--EEEESSSSEEEESSB
T ss_pred ccccchhhhCCCCcEEEEEECCCCcEE--EEEeCCCCEEEEecC
Confidence 36999999999999999999 888888 888887 99999993
No 48
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=92.49 E-value=0.063 Score=51.44 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=35.5
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
.+|++.+.++|+++.++|+++.+++. ++..++ +++|+||
T Consensus 126 ~~h~~~v~~l~~~~~vla~s~~g~i~--a~~~~~~~~~gvQf 165 (189)
T 1wl8_A 126 ESHMDEVKELPPKFKILARSETCPIE--AMKHEELPIYGVQF 165 (189)
T ss_dssp ECCSEEEEECCTTEEEEEEESSCSCS--EEEESSSCEEEESS
T ss_pred EEeeeehhhCCCCcEEEEEcCCCCEE--EEEeCCceEEEEec
Confidence 37999999999999999999999888 888777 6999999
No 49
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=91.64 E-value=0.26 Score=43.75 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=58.2
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC------------------CC----CcHHHH
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL------------------RE----ESKEEA 140 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL------------------R~----eS~~Ea 140 (676)
++|+|++.|...|..++.....+.... ..+++++||-... .. ...+..
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 72 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLT----------GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIA 72 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHH----------CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHH
Confidence 689999999999988877665544321 1278999986531 10 011122
Q ss_pred HHHHHHHHhcCCeE---EEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 141 NIVSHRVSDMGIRC---EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 141 e~V~~l~~~LGI~~---~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
+.+.+.++..|+++ ...-. .|++. +.+.++|++.++|.|++|++..
T Consensus 73 ~~~~~~~~~~g~~~~~~~~~~~--------~g~~~--------~~I~~~a~~~~~dliV~G~~~~ 121 (147)
T 3hgm_A 73 VQAKTRATELGVPADKVRAFVK--------GGRPS--------RTIVRFARKRECDLVVIGAQGT 121 (147)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEE--------ESCHH--------HHHHHHHHHTTCSEEEECSSCT
T ss_pred HHHHHHHHhcCCCccceEEEEe--------cCCHH--------HHHHHHHHHhCCCEEEEeCCCC
Confidence 33444556678776 32211 12222 3456788999999999998753
No 50
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=91.58 E-value=0.044 Score=56.80 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=31.1
Q ss_pred ccccccC-CcceEeeeccCcc-ccccccccCC-Cee-Eeec
Q 005804 5 SIVSAQS-RTTSTLLSTLVAR-LSLSSVKCRI-PFT-RSQY 41 (676)
Q Consensus 5 ~~v~~~~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~q~ 41 (676)
|.|..+| +++.++|+++++. +. ++..++ +++ |+||
T Consensus 214 ~~v~~l~~~g~~v~A~s~dg~~ie--aie~~~~p~~lGvQf 252 (289)
T 2v4u_A 214 NLIKQFEQNDLSFVGQDVDGDRME--IIELANHPYFVGVQF 252 (289)
T ss_dssp GGSGGGTTSSEEEEEEETTSCSEE--EEEESSSSCEEEESS
T ss_pred HHHHhcccCCeEEEEEcCCCCeEE--EEEcCCCCeEEEEEC
Confidence 8999999 9999999999886 78 888876 666 9999
No 51
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=90.58 E-value=0.12 Score=49.70 Aligned_cols=38 Identities=8% Similarity=-0.104 Sum_probs=28.6
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
+.|+|.|..+|+++.++|+++.+ ++ ++.+.+ ++||+||
T Consensus 130 ~~H~~~v~~lp~~~~v~a~~~~~-~~--ai~~~~~~~~gvQf 168 (192)
T 1i1q_B 130 RYHSLVGSNVPAGLTINAHFNGM-VM--AVRHDADRVCGFQF 168 (192)
T ss_dssp ECCC---CCCCTTCEEEEEETTE-EE--EEEETTTTEEEESS
T ss_pred echhhHhhhCCCccEEEECCCCc-EE--EEEECCCCEEEEEc
Confidence 47999999999999999977655 45 666655 8999999
No 52
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=90.48 E-value=0.1 Score=51.66 Aligned_cols=38 Identities=8% Similarity=0.124 Sum_probs=33.0
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
+.|++.|..+|+++.++|+|+ ..++ ++.+++ +++|+||
T Consensus 150 ~~H~~~v~~l~~~~~vlA~s~-~~i~--ai~~~~~~i~gvQf 188 (218)
T 2vpi_A 150 LTHGDSVDKVADGFKVVARSG-NIVA--GIANESKKLYGAQF 188 (218)
T ss_dssp ECSEEEESSCCTTCEEEEEET-TEEE--EEEETTTTEEEESS
T ss_pred ehhhhHhhhcCCCCEEEEEcC-CeEE--EEEECCCCEEEEEc
Confidence 479999999999999999995 4777 887655 8999999
No 53
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=90.29 E-value=0.097 Score=52.24 Aligned_cols=38 Identities=11% Similarity=-0.045 Sum_probs=34.1
Q ss_pred CCCcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 1 MARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 1 ms~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
++|+|. ..+|+++.++|+|+.+++. ++...++++|+||
T Consensus 141 ~~H~~~-~~lp~~~~vla~s~~~~~~--a~~~~~~v~gvQf 178 (236)
T 3l7n_A 141 HWHGDM-PGLPDKAQVLAISQGCPRQ--IIKFGPKQYAFQC 178 (236)
T ss_dssp EEEEEE-CCCCTTCEEEEECSSCSCS--EEEEETTEEEESS
T ss_pred EecCCc-ccCCChheEEEECCCCCEE--EEEECCCEEEEEe
Confidence 368987 7899999999999999988 8887779999999
No 54
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=90.07 E-value=0.18 Score=44.80 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=55.7
Q ss_pred CeEEEEEcCChh--HHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC-------------Cc----HHHHHHH
Q 005804 83 HRIALGVSGGPD--SMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-------------ES----KEEANIV 143 (676)
Q Consensus 83 ~rVlVAVSGGvD--SmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~-------------eS----~~Eae~V 143 (676)
++|+|++.|... |..++.....+.... ..+++++||-..... .. .+-.+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARID----------DAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHH----------TCEEEEEEEECC----------------CHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhc----------CCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHH
Confidence 689999999999 877766555443321 127899998654210 00 1122344
Q ss_pred HHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc
Q 005804 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha 201 (676)
+++++++|++...+..... .|++. +.+.+++++.++|.|++|+|.
T Consensus 72 ~~~~~~~~~~~~~v~~~~~-----~g~~~--------~~I~~~a~~~~~dliV~G~~~ 116 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVA-----EGSPK--------DKILALAKSLPADLVIIASHR 116 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEE-----ESCHH--------HHHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHcCCCCCceEEEEE-----ecChH--------HHHHHHHHHhCCCEEEEeCCC
Confidence 5566677764211111011 12222 345678999999999999984
No 55
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=89.87 E-value=3.2 Score=38.17 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=61.7
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEE--EEEC-C----------------CCCCcHHH
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAI--TVDH-G----------------LREESKEE 139 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aV--hVDH-G----------------LR~eS~~E 139 (676)
....++|+|++.|...|..++.....+...+ .+++++ ||-. . ++....+.
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~~~-----------a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAGAD-----------AKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEI 82 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHTTT-----------SEEEEEEECCC--------------------CCTHHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhCCC-----------CEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHH
Confidence 4456899999999999988877665554311 268888 6521 1 11112223
Q ss_pred HHHHHHHHHhcCCe-EEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHH
Q 005804 140 ANIVSHRVSDMGIR-CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAEL 207 (676)
Q Consensus 140 ae~V~~l~~~LGI~-~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET 207 (676)
.+.+.+.+...|++ +.+.-. .|++ .+.+.++|++.++|.|++|.+.....+.
T Consensus 83 l~~~~~~~~~~gv~~v~~~v~--------~G~~--------~~~I~~~a~~~~~DLIV~G~~g~~~~~~ 135 (163)
T 1tq8_A 83 LHDAKERAHNAGAKNVEERPI--------VGAP--------VDALVNLADEEKADLLVVGNVGLSTIAG 135 (163)
T ss_dssp HHHHHHHHHTTTCCEEEEEEE--------CSSH--------HHHHHHHHHHTTCSEEEEECCCCCSHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEe--------cCCH--------HHHHHHHHHhcCCCEEEECCCCCCcccc
Confidence 34444555667887 554321 1332 1245577889999999999986554443
No 56
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=88.82 E-value=1.6 Score=39.94 Aligned_cols=96 Identities=9% Similarity=-0.060 Sum_probs=60.9
Q ss_pred CeEEEEEcC-ChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC-------cHHHHHHHHHHHHhcCCeE
Q 005804 83 HRIALGVSG-GPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE-------SKEEANIVSHRVSDMGIRC 154 (676)
Q Consensus 83 ~rVlVAVSG-GvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e-------S~~Eae~V~~l~~~LGI~~ 154 (676)
++|+|++.| ...|..++.....+.... ..+++++||-....+. ..+..+.+.+.++..|+++
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~----------~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 94 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLR----------GVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEG 94 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHH----------TCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 689999999 999988877666554431 1278999987643211 1122233444556678887
Q ss_pred EEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 155 EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 155 ~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
.+... . ..|++. +.+.++|++.++|.|++|.+..
T Consensus 95 ~~~~~-v-----~~G~~~--------~~I~~~a~~~~~DLIV~G~~g~ 128 (155)
T 3dlo_A 95 EEHLL-V-----RGKEPP--------DDIVDFADEVDAIAIVIGIRKR 128 (155)
T ss_dssp EEEEE-E-----SSSCHH--------HHHHHHHHHTTCSEEEEECCEE
T ss_pred eEEEE-e-----cCCCHH--------HHHHHHHHHcCCCEEEECCCCC
Confidence 65321 1 123332 3466788999999999998754
No 57
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=88.38 E-value=4.2 Score=40.64 Aligned_cols=101 Identities=7% Similarity=-0.014 Sum_probs=68.0
Q ss_pred CCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEEC
Q 005804 80 KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRC 159 (676)
Q Consensus 80 ~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~ 159 (676)
.+.++|+||+.|...|..++..+..+.... ..+++++||...-. ..+..+.+.+.++..|++..+.-.
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~----------~~~l~ll~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~ 235 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKT----------GGELHIIHVSEDGD--KTADLRVMEEVIGAEGIEVHVHIE 235 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHH----------TCEEEEEEECSSSC--CHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhc----------CCEEEEEEEccCch--HHHHHHHHHHHHHHcCCcEEEEEe
Confidence 345799999999999988777666554321 12789999876432 455566677777888998554321
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHH
Q 005804 160 DWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (676)
Q Consensus 160 ~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~ 208 (676)
.+++. +.+.+++++.+++.|++|.+.....+.+
T Consensus 236 --------~g~~~--------~~I~~~a~~~~~dLlV~G~~~~~~~~~~ 268 (294)
T 3loq_A 236 --------SGTPH--------KAILAKREEINATTIFMGSRGAGSVMTM 268 (294)
T ss_dssp --------CSCHH--------HHHHHHHHHTTCSEEEEECCCCSCHHHH
T ss_pred --------cCCHH--------HHHHHHHHhcCcCEEEEeCCCCCCccce
Confidence 12222 3456788999999999999865444433
No 58
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=88.29 E-value=2.5 Score=37.02 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=56.1
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhh-hCCCCCCCCCCCCCCcEEEEEEECCCCCCc------------------HHHHHHH
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWK-TGGFNQNGEAGEFIDGLLAITVDHGLREES------------------KEEANIV 143 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~-~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS------------------~~Eae~V 143 (676)
++|+|++.|...|..++.....+. ... ..+++++||-....... .+..+.+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDA----------DCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKF 71 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCT----------TEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCC----------CCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998887776665 321 12789999876543211 1112223
Q ss_pred HHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 144 ~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
.+.+...|+++...-. .|++. +.+.++++ ++|.|++|++...
T Consensus 72 ~~~~~~~g~~~~~~v~--------~g~~~--------~~I~~~a~--~~dliV~G~~~~~ 113 (138)
T 3idf_A 72 STFFTEKGINPFVVIK--------EGEPV--------EMVLEEAK--DYNLLIIGSSENS 113 (138)
T ss_dssp HHHHHTTTCCCEEEEE--------ESCHH--------HHHHHHHT--TCSEEEEECCTTS
T ss_pred HHHHHHCCCCeEEEEe--------cCChH--------HHHHHHHh--cCCEEEEeCCCcc
Confidence 3344556777554321 12221 23445565 8999999998543
No 59
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=87.18 E-value=4.1 Score=35.72 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=58.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEE-C-C--CCC------------CcHHHHHHHHHH
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD-H-G--LRE------------ESKEEANIVSHR 146 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVD-H-G--LR~------------eS~~Eae~V~~l 146 (676)
++|+|++.|...|..++.....+.... ..+++++||. . . ... ...+-.+.+.++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 72 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRH----------DAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDL 72 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHH----------TCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhc----------CCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHH
Confidence 689999999999987776655544321 1278899985 2 1 110 011223445667
Q ss_pred HHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHH
Q 005804 147 VSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (676)
Q Consensus 147 ~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaE 206 (676)
+++.|++.....+. .|++. +.+.++|++.++|.|++|++ ....+
T Consensus 73 ~~~~~~~~~~~~~~-------~g~~~--------~~I~~~a~~~~~dliV~G~~-~~~~~ 116 (141)
T 1jmv_A 73 AESVDYPISEKLSG-------SGDLG--------QVLSDAIEQYDVDLLVTGHH-QDFWS 116 (141)
T ss_dssp HHHSSSCCCCEEEE-------EECHH--------HHHHHHHHHTTCCEEEEEEC-CCCHH
T ss_pred HHHcCCCceEEEEe-------cCCHH--------HHHHHHHHhcCCCEEEEeCC-Cchhh
Confidence 77788764111110 12221 23557889999999999998 54433
No 60
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=86.77 E-value=0.33 Score=48.65 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=32.4
Q ss_pred CCcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 2 ARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
.|++.+ .+|+++.++|+|+.+++. ++..++ ++|+||
T Consensus 149 ~H~~~v-~lp~~~~vlA~s~~~~ie--a~~~~~-i~gvQf 184 (239)
T 1o1y_A 149 WHGDTF-DLPRRATRVFTSEKYENQ--GFVYGK-AVGLQF 184 (239)
T ss_dssp EESEEE-CCCTTCEEEEECSSCSCS--EEEETT-EEEESS
T ss_pred ecCCcc-ccCCCCEEEEEcCCCCEE--EEEECC-EEEEEe
Confidence 489988 899999999999998888 888877 999999
No 61
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=85.98 E-value=1.5 Score=38.78 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=55.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC------------------cHHHHHHHH
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE------------------SKEEANIVS 144 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e------------------S~~Eae~V~ 144 (676)
++|+|++.|...|..++.....+.... ..+++++||-...... ..+..+.+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRH----------QANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQ 75 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHH----------TCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988877665544321 1278999985432110 011112223
Q ss_pred HHHHhcCC-eEEEEECccccCCCCCCChHHHHHHHHHHHHHH-HHHHcCCCEEeeccccc
Q 005804 145 HRVSDMGI-RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQK-VCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 145 ~l~~~LGI-~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~-~A~e~g~~~LatGHhaD 202 (676)
+.+...|+ ++...-. .|++. +.+.+ +|++.++|.|++|++..
T Consensus 76 ~~~~~~g~~~~~~~~~--------~g~~~--------~~I~~~~a~~~~~dliV~G~~~~ 119 (146)
T 3s3t_A 76 QFVATTSAPNLKTEIS--------YGIPK--------HTIEDYAKQHPEIDLIVLGATGT 119 (146)
T ss_dssp HHHTTSSCCCCEEEEE--------EECHH--------HHHHHHHHHSTTCCEEEEESCCS
T ss_pred HHHHhcCCcceEEEEe--------cCChH--------HHHHHHHHhhcCCCEEEECCCCC
Confidence 33444567 5443321 12221 23455 88899999999998754
No 62
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=85.93 E-value=5.3 Score=35.36 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=57.5
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC---------------CCc----HHHHHH
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR---------------EES----KEEANI 142 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR---------------~eS----~~Eae~ 142 (676)
-++|+|++.|...|..++.....+.... ..+++++||-.... ... .+-.+.
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQI----------GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQK 75 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHH----------TCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhc----------CCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHH
Confidence 4799999999999988877665554431 12789999854210 001 112234
Q ss_pred HHHHHHhcCCeE-EEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHH
Q 005804 143 VSHRVSDMGIRC-EIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (676)
Q Consensus 143 V~~l~~~LGI~~-~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaE 206 (676)
+.++++++|++. ... + ..|++. +.+.++|++.++|.|++|++.....+
T Consensus 76 l~~~~~~~~~~~~~~~-~-------~~g~~~--------~~I~~~a~~~~~dliV~G~~~~~~~~ 124 (150)
T 3tnj_A 76 LSQIGNTLGIDPAHRW-L-------VWGEPR--------EEIIRIAEQENVDLIVVGSHGRHGLA 124 (150)
T ss_dssp HHHHHHHHTCCGGGEE-E-------EESCHH--------HHHHHHHHHTTCSEEEEEEC------
T ss_pred HHHHHHHcCCCcceEE-E-------ecCCHH--------HHHHHHHHHcCCCEEEEecCCCCCcC
Confidence 555777788763 111 1 012222 34567899999999999988654333
No 63
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=85.39 E-value=0.28 Score=50.28 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=28.2
Q ss_pred cccccc-CCcceEeeeccC----c-cccccccccCC-Cee-Eeec
Q 005804 5 SIVSAQ-SRTTSTLLSTLV----A-RLSLSSVKCRI-PFT-RSQY 41 (676)
Q Consensus 5 ~~v~~~-~~~~~~~~~~~~----~-~~~~~~~~~~~-~~~-~~q~ 41 (676)
+.|..+ |+++.++|+|+. . .+. ++..++ +++ |+||
T Consensus 190 ~~v~~l~~~g~~v~A~s~d~~~~g~~ie--aie~~~~p~~~GvQf 232 (273)
T 2w7t_A 190 AYFEDLRKAGLCISAVTDPTFSSRCRVE--AVENPSLRFFLAVQF 232 (273)
T ss_dssp GGHHHHHHTTCEEEEESCTTCCTTCCEE--EEECTTSSSEEEESS
T ss_pred HHHHhhccCCcEEEEEcCCcCCCCCeEE--EEEcCCCCeEEEEeC
Confidence 445566 899999999988 4 788 888877 655 9999
No 64
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=84.81 E-value=4.6 Score=35.33 Aligned_cols=93 Identities=9% Similarity=0.116 Sum_probs=53.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC-------CC-----cHHH-HHHHHHHHHh
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-------EE-----SKEE-ANIVSHRVSD 149 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR-------~e-----S~~E-ae~V~~l~~~ 149 (676)
++|+|++.|...|..++.....+.+.. ..+++++||..... ++ ..++ .+...++++.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 72 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAH----------GARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL 72 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHH----------TCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc----------CCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999987776655544321 12788999865211 00 0011 1223334444
Q ss_pred cCC-eEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc
Q 005804 150 MGI-RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (676)
Q Consensus 150 LGI-~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha 201 (676)
.|+ ++.+.-. .|++. +.+.++|++.++|.|++|+|.
T Consensus 73 ~g~~~~~~~~~--------~g~~~--------~~I~~~a~~~~~dliV~G~~~ 109 (137)
T 2z08_A 73 TGVPKEDALLL--------EGVPA--------EAILQAARAEKADLIVMGTRG 109 (137)
T ss_dssp HCCCGGGEEEE--------ESSHH--------HHHHHHHHHTTCSEEEEESSC
T ss_pred cCCCccEEEEE--------ecCHH--------HHHHHHHHHcCCCEEEECCCC
Confidence 676 4332211 12221 245678899999999999885
No 65
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=84.57 E-value=0.45 Score=54.76 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=31.0
Q ss_pred CCcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 2 ARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
.|.+.+..+|+++.++|+|+.+++. ++.++. +||+||
T Consensus 576 ~h~~~~~~lp~g~~v~A~s~dg~i~--Ai~~~~-~~GVQF 612 (645)
T 3r75_A 576 VRDEMDVDGVGTVAISRDPRTGEVH--ALRGPT-FSSMQF 612 (645)
T ss_dssp SCSEEEETTTEEEEEEECTTTCBEE--EEEETT-EEEESS
T ss_pred ehhhccccCCCCeEEEEEcCCCcEE--EEEcCC-EEEEEe
Confidence 4544455799999999999999999 998765 799999
No 66
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=83.60 E-value=6.3 Score=35.44 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=55.8
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECC----------CC-------CCc-----H--
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG----------LR-------EES-----K-- 137 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHG----------LR-------~eS-----~-- 137 (676)
-++|+|++.|...|..++.....+... ...+++++||-.. +. +.. .
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTL----------KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELK 74 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCS----------SCCEEEEEEEEEGGGTC-----------------CHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhh----------cCCeEEEEEEecCccccccccccccccccccccchhhhHHHHH
Confidence 378999999999999887766554332 1237889987421 10 110 0
Q ss_pred ----HH----HHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 138 ----EE----ANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 138 ----~E----ae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
++ .+.+.+.++..|+++.+.-. .|++. +.+.++|++.++|.|++|+|..
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~--------~G~~~--------~~I~~~a~~~~~dlIV~G~~g~ 131 (162)
T 1mjh_A 75 NKLTEEAKNKMENIKKELEDVGFKVKDIIV--------VGIPH--------EEIVKIAEDEGVDIIIMGSHGK 131 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEE--------EECHH--------HHHHHHHHHTTCSEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEEc--------CCCHH--------HHHHHHHHHcCCCEEEEcCCCC
Confidence 00 11222234456887654421 12222 2356788999999999998753
No 67
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=83.57 E-value=3.9 Score=37.28 Aligned_cols=94 Identities=9% Similarity=0.061 Sum_probs=55.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC--------C-----------Cc----HHH
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR--------E-----------ES----KEE 139 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR--------~-----------eS----~~E 139 (676)
++|+|++.|..+|..++.....+... ...+++++||-.... + +- .++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~----------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKM----------EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEE 75 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCS----------CCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHh----------cCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHH
Confidence 78999999999998877666554332 123788998742110 0 00 011
Q ss_pred ----HHHHHHHHHhcCCeEEE--EECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 140 ----ANIVSHRVSDMGIRCEI--VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 140 ----ae~V~~l~~~LGI~~~i--v~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
.+.+.+.+...|+++.. .-. .|++ .+.+.++|++.++|.|++|+|..
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~~~--------~g~~--------~~~I~~~a~~~~~DlIV~G~~g~ 128 (170)
T 2dum_A 76 ASRKLQEKAEEVKRAFRAKNVRTIIR--------FGIP--------WDEIVKVAEEENVSLIILPSRGK 128 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEE--------EECH--------HHHHHHHHHHTTCSEEEEESCCC
T ss_pred HHHHHHHHHHHHHHcCCceeeeeEEe--------cCCh--------HHHHHHHHHHcCCCEEEECCCCC
Confidence 12222333445777654 211 1222 22456788999999999998854
No 68
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=81.58 E-value=6.9 Score=35.01 Aligned_cols=97 Identities=11% Similarity=0.000 Sum_probs=57.2
Q ss_pred CCeEEEEEc--CChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC-----C-----------cHHHHHHH
Q 005804 82 HHRIALGVS--GGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE-----E-----------SKEEANIV 143 (676)
Q Consensus 82 ~~rVlVAVS--GGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~-----e-----------S~~Eae~V 143 (676)
-++|+|++. |...|..++.....+.... ..+++++||-..... . ..+..+.+
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDY----------DVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEY 84 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHH----------TCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhc----------CCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 478999999 9999998877665544431 127899998653210 0 11112223
Q ss_pred HHHHHhcCCe-EEEEECccccCCCCCCChHHHHHHHHHHHHHHH-HHHcCCCEEeeccccch
Q 005804 144 SHRVSDMGIR-CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKV-CIQHQIGVLLIAHHADD 203 (676)
Q Consensus 144 ~~l~~~LGI~-~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~-A~e~g~~~LatGHhaDD 203 (676)
.+.++..|++ +.+.-. . .|++. +.+.++ |++.++|.|++|++...
T Consensus 85 ~~~~~~~g~~~~~~~v~-~------~g~~~--------~~I~~~~a~~~~~DlIV~G~~g~~ 131 (156)
T 3fg9_A 85 VQLAEQRGVNQVEPLVY-E------GGDVD--------DVILEQVIPEFKPDLLVTGADTEF 131 (156)
T ss_dssp HHHHHHHTCSSEEEEEE-E------CSCHH--------HHHHHTHHHHHCCSEEEEETTCCC
T ss_pred HHHHHHcCCCceEEEEE-e------CCCHH--------HHHHHHHHHhcCCCEEEECCCCCC
Confidence 3345566884 543321 1 12222 235566 88999999999998643
No 69
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=77.44 E-value=16 Score=33.20 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=55.6
Q ss_pred CCeEEEEEcCCh---------hHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECC----CC---C--CcHH-----
Q 005804 82 HHRIALGVSGGP---------DSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHG----LR---E--ESKE----- 138 (676)
Q Consensus 82 ~~rVlVAVSGGv---------DSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHG----LR---~--eS~~----- 138 (676)
-++|+|++.|.. .|..++.....+..... ....+++++||-.. +. . ....
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~-------~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 77 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSN-------TSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDM 77 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTC-------TTSEEEEEEEEEC----------CCCCSHHHHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhccc-------CCCCEEEEEEEeecccccccccccccCCHHHHHHH
Confidence 378999999999 88877766655321100 01127888888421 10 0 0111
Q ss_pred ----------HHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 139 ----------EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 139 ----------Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
..+.+.+.+...|+++.+.-. .|++ .+.+.++|++.+++.|++|+|...
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~--------~G~~--------~~~I~~~a~~~~~DLIVmG~~g~~ 136 (175)
T 2gm3_A 78 RQSNKAKGLHLLEFFVNKCHEIGVGCEAWIK--------TGDP--------KDVICQEVKRVRPDFLVVGSRGLG 136 (175)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTCEEEEEEE--------ESCH--------HHHHHHHHHHHCCSEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceEEEEe--------cCCH--------HHHHHHHHHHhCCCEEEEeCCCCC
Confidence 111222234556887654321 1222 124567788999999999998644
No 70
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=76.84 E-value=1.6 Score=42.01 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=29.7
Q ss_pred CCCcc-cccccCCcceEeeeccC-----ccccccccccCC-CeeEeec
Q 005804 1 MARGS-IVSAQSRTTSTLLSTLV-----ARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 1 ms~g~-~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~q~ 41 (676)
+.|+| +..-.|+++.++|.+++ +++. ++.+++ +++|+||
T Consensus 140 ~~H~~~s~~~~~~~~~~~a~~~~~ng~~~~i~--a~~~~~~~~~gvQf 185 (213)
T 3d54_D 140 IAHGFGRYVKIDDVNVVLRYVKDVNGSDERIA--GVLNESGNVFGLMP 185 (213)
T ss_dssp CCBSSCEEECSSCCEEEEEESSCSSCCGGGEE--EEECSSSCEEEECS
T ss_pred eecCceEEEecCCCcEEEEEcCCCCCCcccee--EEEcCCCCEEEEeC
Confidence 36877 44445789999999876 5777 777744 9999999
No 71
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=76.41 E-value=36 Score=35.12 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=70.8
Q ss_pred cccHHHHHHHHHHHHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC
Q 005804 60 LTDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (676)
Q Consensus 60 ~~~~~~~~~~~~~~i~~~~-------i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL 132 (676)
....+++.+.|.+.-...+ -....||+|-+||+. ..|-.|+..+.. | .++.++.+|.-||.
T Consensus 61 ~~~~~~L~~~f~~la~~l~m~~~l~~~~~~~ri~vl~Sg~g--~~l~~ll~~~~~-g--------~l~~~i~~Visn~~- 128 (286)
T 3n0v_A 61 DFDEAGFRAGLAERSEAFGMAFELTAPNHRPKVVIMVSKAD--HCLNDLLYRQRI-G--------QLGMDVVAVVSNHP- 128 (286)
T ss_dssp SCCHHHHHHHHHHHHGGGTCEEEEECTTCCCEEEEEESSCC--HHHHHHHHHHHT-T--------SSCCEEEEEEESSS-
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEeecCCCCcEEEEEEeCCC--CCHHHHHHHHHC-C--------CCCcEEEEEEeCcH-
Confidence 3557888888865433321 133568999999984 455666665533 2 12347888888875
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHH
Q 005804 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (676)
Q Consensus 133 R~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~L 209 (676)
. +..+|+++|||++.++... .+-++ --..+.+..++.+.|.++++-...=.-+.++
T Consensus 129 --~-------~~~~A~~~gIp~~~~~~~~-------~~r~~-----~~~~~~~~l~~~~~Dlivla~y~~il~~~~l 184 (286)
T 3n0v_A 129 --D-------LEPLAHWHKIPYYHFALDP-------KDKPG-----QERKVLQVIEETGAELVILARYMQVLSPELC 184 (286)
T ss_dssp --T-------THHHHHHTTCCEEECCCBT-------TBHHH-----HHHHHHHHHHHHTCSEEEESSCCSCCCHHHH
T ss_pred --H-------HHHHHHHcCCCEEEeCCCc-------CCHHH-----HHHHHHHHHHhcCCCEEEecccccccCHHHH
Confidence 2 2356889999998764321 11111 1123556667889999999876443333343
No 72
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=74.47 E-value=1.1 Score=44.04 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=28.2
Q ss_pred CCccccccc-CCcceEeeecc-----CccccccccccCCCeeEeec
Q 005804 2 ARGSIVSAQ-SRTTSTLLSTL-----VARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 2 s~g~~v~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~q~ 41 (676)
.|++.|..+ |+++.++|+++ ...+. ++.. ++++|+||
T Consensus 153 ~h~~~v~~~~~~~~~vla~~~~~~~g~~~~~--a~~~-~~v~gvQf 195 (227)
T 2abw_A 153 IRAPYIREILSDEVKVLATFSHESYGPNIIA--AVEQ-NNCLGTVF 195 (227)
T ss_dssp ESCCEEEEECCTTCEEEEEEEETTTEEEEEE--EEEE-TTEEEESS
T ss_pred EEcceEeecCCCCcEEEEEcccccCCCCceE--EEEE-CCEEEEEE
Confidence 577888887 99999999996 34444 4544 47999999
No 73
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=73.59 E-value=14 Score=36.78 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
-++|+|++.|...|..++.....+.+.. ..+++++||... .+..+..+.+.+.+...|+++...-. +
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~~----------~a~l~ll~v~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~-~ 73 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGVT----------QSHLHLLVCEKR--RDHSAALNDLAQELREEGYSVSTNQA-W 73 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHHH----------CCEEEEEEECSS--SCCHHHHHHHHHHHHHTTCCEEEEEE-C
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHhc----------CCeEEEEEeeCc--HHHHHHHHHHHHHHhhCCCeEEEEEE-e
Confidence 3799999999999887776655444321 127899999763 34455566666666778888765532 1
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 162 LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 162 ~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
.+++ ...+.+.+++.++|.|++|++...
T Consensus 74 ------~g~~--------~~~i~~~a~~~~~dliV~G~~~~~ 101 (290)
T 3mt0_A 74 ------KDSL--------HQTIIAEQQAEGCGLIIKQHFPDN 101 (290)
T ss_dssp ------SSSH--------HHHHHHHHHHHTCSEEEEECCCSC
T ss_pred ------CCCH--------HHHHHHHHHhcCCCEEEEecccCC
Confidence 1222 123556788889999999998654
No 74
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=73.19 E-value=27 Score=34.62 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=57.6
Q ss_pred CCCeEEEEEcCChh-------HHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC------------cHHHHH
Q 005804 81 PHHRIALGVSGGPD-------SMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE------------SKEEAN 141 (676)
Q Consensus 81 ~~~rVlVAVSGGvD-------SmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e------------S~~Eae 141 (676)
+.++|+||+.|... |..++.....+.... ..+++++||-...... ..+..+
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA----------KATLHVISAHPSPMLSSADPTFQLSETIEARYRE 202 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT----------TCEEEEEEEEC---------CHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc----------CCeEEEEEEecCccccccCchhHHHHHHHHHHHH
Confidence 45899999999987 776666555544321 1278999986542110 011123
Q ss_pred HHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 142 IVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 142 ~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
.+.++++++|++.....+ . .|++. +.+.+++++.++|.|++|++...
T Consensus 203 ~l~~~~~~~g~~~~~~~v--~-----~g~~~--------~~I~~~a~~~~~dLiVmG~~g~~ 249 (290)
T 3mt0_A 203 ACRTFQAEYGFSDEQLHI--E-----EGPAD--------VLIPRTAQKLDAVVTVIGTVART 249 (290)
T ss_dssp HHHHHHHHHTCCTTTEEE--E-----ESCHH--------HHHHHHHHHHTCSEEEEECCSSC
T ss_pred HHHHHHHHcCCCcceEEE--e-----ccCHH--------HHHHHHHHhcCCCEEEECCCCCc
Confidence 455577777874110000 0 12222 34567889999999999988543
No 75
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=73.00 E-value=1.1 Score=48.26 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=32.5
Q ss_pred CCcccccc--cCCcceEeeec-cCccccccccccCC-CeeEeec
Q 005804 2 ARGSIVSA--QSRTTSTLLST-LVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 2 s~g~~v~~--~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
.||+.|.. +|+++.++|.+ ..+.+. ++.+++ +++|+||
T Consensus 310 ~H~~aV~~~~Lp~~~~v~a~s~~Dg~ie--ai~~~~~pi~gVQF 351 (379)
T 1a9x_B 310 NHGFAVDEATLPANLRVTHKSLFDGTLQ--GIHRTDKPAFSFQG 351 (379)
T ss_dssp EEEEEECSTTCCTTEEEEEEETTTCCEE--EEEESSSSEEEESS
T ss_pred CccceEecccCCCCeEEEEEeCCCCcEE--EEEECCCCEEEEEe
Confidence 59999975 99999999998 566677 888766 9999999
No 76
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=71.11 E-value=58 Score=33.67 Aligned_cols=116 Identities=12% Similarity=0.123 Sum_probs=69.7
Q ss_pred ccHHHHHHHHHHHHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC
Q 005804 61 TDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (676)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~-------i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR 133 (676)
...+++.+.|.+.-...+ -....||+|-+||+- +.|-.|+..+.... ++.++.+|.-||.
T Consensus 67 ~~~~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g--~~l~~ll~~~~~g~---------l~~~i~~Visn~~-- 133 (292)
T 3lou_A 67 LRVDALRREFEPIAERFRMQWAIHDVAARPKVLIMVSKLE--HCLADLLFRWKMGE---------LKMDIVGIVSNHP-- 133 (292)
T ss_dssp CCHHHHHHHHHHHHHHHTCEEEEEETTSCCEEEEEECSCC--HHHHHHHHHHHHTS---------SCCEEEEEEESSS--
T ss_pred CCHHHHHHHHHHHHHhcCcEEEeeccCCCCEEEEEEcCCC--cCHHHHHHHHHcCC---------CCcEEEEEEeCcH--
Confidence 357788877755333221 233568999999984 45666666554321 2237888888884
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHH
Q 005804 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (676)
Q Consensus 134 ~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~L 209 (676)
. +..+|+++|||++.++.. ..+-++ --..+.+..++++.|.++++....=.-+.++
T Consensus 134 -~-------~~~~A~~~gIp~~~~~~~-------~~~r~~-----~~~~~~~~l~~~~~Dlivla~y~~il~~~~l 189 (292)
T 3lou_A 134 -D-------FAPLAAQHGLPFRHFPIT-------ADTKAQ-----QEAQWLDVFETSGAELVILARYMQVLSPEAS 189 (292)
T ss_dssp -T-------THHHHHHTTCCEEECCCC-------SSCHHH-----HHHHHHHHHHHHTCSEEEESSCCSCCCHHHH
T ss_pred -H-------HHHHHHHcCCCEEEeCCC-------cCCHHH-----HHHHHHHHHHHhCCCEEEecCchhhCCHHHH
Confidence 2 234689999999876431 111111 1123556667889999999876543333333
No 77
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=70.68 E-value=0.87 Score=43.72 Aligned_cols=37 Identities=11% Similarity=-0.057 Sum_probs=30.2
Q ss_pred CCcccccccCCcceEeeeccC--ccccccccccCCCeeEeecc
Q 005804 2 ARGSIVSAQSRTTSTLLSTLV--ARLSLSSVKCRIPFTRSQYL 42 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~q~~ 42 (676)
.|++.|... ++.++|+|+. +++. ++..+++++|+||-
T Consensus 140 ~H~~~v~~~--~~~vla~s~~~g~~~~--a~~~~~~i~gvQfH 178 (201)
T 1gpw_B 140 VHTYRAVCE--EEHVLGTTEYDGEIFP--SAVRKGRILGFQFH 178 (201)
T ss_dssp EESEEEEEC--GGGEEEEEEETTEEEE--EEEEETTEEEESSC
T ss_pred ECcceeccC--CCEEEEEEccCCceEE--EEEECCCEEEEECC
Confidence 589999866 7999999976 4777 77666699999993
No 78
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=70.43 E-value=0.92 Score=47.41 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=32.0
Q ss_pred CCccccc--------ccCCcceEeeeccCcccc-ccccccCC-CeeEeec
Q 005804 2 ARGSIVS--------AQSRTTSTLLSTLVARLS-LSSVKCRI-PFTRSQY 41 (676)
Q Consensus 2 s~g~~v~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~q~ 41 (676)
.|++.|. .+|+++.++|++..+.+- .+++.+++ +++|+||
T Consensus 191 ~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQf 240 (315)
T 1l9x_A 191 FHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQW 240 (315)
T ss_dssp EEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESS
T ss_pred hhhhhcCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEe
Confidence 5899998 799999999999988643 22456664 8999999
No 79
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=70.08 E-value=37 Score=35.33 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=67.3
Q ss_pred ccHHHHHHHHHHHHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC
Q 005804 61 TDMTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR 133 (676)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~-------i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR 133 (676)
...+++.+.|.+.-...+ -.+..||+|-+||+- | .|..|+..+.. | .++.++.+|.-||.
T Consensus 77 ~~~~~L~~~l~~la~~l~m~~~l~~~~~~~ri~vl~Sg~g-~-nl~~ll~~~~~-g--------~l~~~I~~Visn~~-- 143 (302)
T 3o1l_A 77 FDLDGFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRES-H-CLADLLHRWHS-D--------ELDCDIACVISNHQ-- 143 (302)
T ss_dssp SCHHHHHHHHHHHHHHHTCEEEEEETTSCCEEEEEECSCC-H-HHHHHHHHHHT-T--------CSCSEEEEEEESSS--
T ss_pred CCHHHHHHHHHHHHHHhCCeeeecccCCCcEEEEEEeCCc-h-hHHHHHHHHHC-C--------CCCcEEEEEEECcH--
Confidence 457888888754333221 234578999999983 4 56666665543 2 12347888888884
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 134 EESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 134 ~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
. ++++|+++|||++..+... .+-++. -..+.+..++.+.|.++++-...
T Consensus 144 -~-------~~~~A~~~gIp~~~~~~~~-------~~r~~~-----~~~~~~~l~~~~~DliVlagym~ 192 (302)
T 3o1l_A 144 -D-------LRSMVEWHDIPYYHVPVDP-------KDKEPA-----FAEVSRLVGHHQADVVVLARYMQ 192 (302)
T ss_dssp -T-------THHHHHTTTCCEEECCCCS-------SCCHHH-----HHHHHHHHHHTTCSEEEESSCCS
T ss_pred -H-------HHHHHHHcCCCEEEcCCCc-------CCHHHH-----HHHHHHHHHHhCCCEEEHhHhhh
Confidence 2 3457899999998764321 111111 12345666788999999986543
No 80
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=66.55 E-value=49 Score=32.93 Aligned_cols=100 Identities=9% Similarity=0.048 Sum_probs=58.2
Q ss_pred CCCeEEEEEcCChh-------HHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCC--------CcH--------
Q 005804 81 PHHRIALGVSGGPD-------SMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLRE--------ESK-------- 137 (676)
Q Consensus 81 ~~~rVlVAVSGGvD-------SmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~--------eS~-------- 137 (676)
+.++|+||+.|..+ |..++..+..+..... ...+++++||...... ...
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~--------~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQ--------KDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALR 226 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHC--------SSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhcc--------CCCeEEEEEeecCcchhhhccCCcccHHHHHHHHH
Confidence 45899999999994 4555544444333210 0127899998653211 010
Q ss_pred -HHHHHHHHHHHhcCCe---EEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHH
Q 005804 138 -EEANIVSHRVSDMGIR---CEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (676)
Q Consensus 138 -~Eae~V~~l~~~LGI~---~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaE 206 (676)
+-.+.+.++++++|++ .++. .|++ .+.+.+++++.+++.|++|++..-..+
T Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~v~----------~g~~--------~~~I~~~a~~~~~dLiV~G~~g~~~~~ 281 (319)
T 3olq_A 227 GQHLIAMKELRQKFSIPEEKTHVK----------EGLP--------EQVIPQVCEELNAGIVVLGILGRTGLS 281 (319)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEE----------ESCH--------HHHHHHHHHHTTEEEEEEECCSCCSTH
T ss_pred HHHHHHHHHHHHHhCCCcccEEEe----------cCCc--------HHHHHHHHHHhCCCEEEEeccCccCCc
Confidence 1134455677788875 2211 1222 134667899999999999998654443
No 81
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=62.56 E-value=3.2 Score=40.58 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=29.3
Q ss_pred CCcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 2 ARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
.|++.|..+|+++.++|+++. .+. ++.. ++++|+||
T Consensus 156 ~h~~~v~~l~~~~~v~a~sdg-~~e--a~~~-~~i~GvQf 191 (219)
T 1q7r_A 156 IRAPHIVEAGDGVDVLATYND-RIV--AARQ-GQFLGCSF 191 (219)
T ss_dssp SSCCEEEEECTTCEEEEEETT-EEE--EEEE-TTEEEESS
T ss_pred EecceeeccCCCcEEEEEcCC-EEE--EEEE-CCEEEEEE
Confidence 588999899999999999954 444 5655 47999999
No 82
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=61.44 E-value=3.4 Score=39.32 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=29.4
Q ss_pred CCcccccccCCcceEeeeccCccccccccccCCCeeEeecc
Q 005804 2 ARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYL 42 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 42 (676)
.|++.|..+|+++.++|+++.++. ++.. ++++|+||-
T Consensus 134 ~h~~~v~~~~~~~~v~a~~d~~~~---a~~~-~~~~gvQfH 170 (196)
T 2nv0_A 134 IRAPHILEAGENVEVLSEHNGRIV---AAKQ-GQFLGCSFH 170 (196)
T ss_dssp ESCCEEEEECTTCEEEEEETTEEE---EEEE-TTEEEESSC
T ss_pred EecceecccCCCcEEEEEECCEEE---EEEE-CCEEEEEEC
Confidence 488888889999999999976553 4444 489999993
No 83
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=54.45 E-value=21 Score=35.39 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=58.0
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC---------C---------CcHHHHHHHH
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR---------E---------ESKEEANIVS 144 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR---------~---------eS~~Eae~V~ 144 (676)
++|+|++.|...|..++.....+.+.. ..+++++||-.... . +..+..+.+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVG----------VEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVA 92 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTT----------CCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhc----------CCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999988776655544431 12788888643211 0 0111223344
Q ss_pred HHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHH
Q 005804 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAE 206 (676)
Q Consensus 145 ~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaE 206 (676)
+.+...|+++....+.+ .|++.+ . + ++++.++|.|++|.+......
T Consensus 93 ~~~~~~g~~~~~~~v~~------~g~~~~---~-----I--~a~~~~~DliV~G~~g~~~~~ 138 (294)
T 3loq_A 93 QKIEAAGIKAEVIKPFP------AGDPVV---E-----I--IKASENYSFIAMGSRGASKFK 138 (294)
T ss_dssp HHHHHTTCEEEECSSCC------EECHHH---H-----H--HHHHTTSSEEEEECCCCCHHH
T ss_pred HHHHHcCCCcceeEeec------cCChhH---h-----e--eeccCCCCEEEEcCCCCcccc
Confidence 45566788876511111 133321 1 2 788899999999988655443
No 84
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=54.01 E-value=9.5 Score=35.54 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=29.4
Q ss_pred cHHHHHHHhccchhhhhhcCceEEccCcceEeec
Q 005804 641 SAKRAILSLKSIPVAARRSLPVLVSSHGQLLSIP 674 (676)
Q Consensus 641 ~~~~~~~~l~~~p~~~r~~lpvl~~~~~~~~~~p 674 (676)
+.++-+.-.| ||...|..+|||.+.+|++++||
T Consensus 75 kLKklf~d~k-IP~~~R~~~Pll~~~~~~IiwV~ 107 (142)
T 3hj7_A 75 KLKEIFIEAK-IPRMERDRWPIVEDADGRILWVP 107 (142)
T ss_dssp EHHHHHHHTT-CCHHHHTTCCEEECTTCCEEEET
T ss_pred cHHHHHHHcC-CCHHHhCCceEEEECCCeEEEEe
Confidence 6778888877 99999999999999889999987
No 85
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=53.64 E-value=53 Score=33.18 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=69.4
Q ss_pred ccccHHHHHHHHHHHHHHcCCCCCCeEEEEEc---CC---hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC
Q 005804 59 YLTDMTKYREAFSRRMAMAGLKPHHRIALGVS---GG---PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (676)
Q Consensus 59 ~~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVS---GG---vDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL 132 (676)
.....+++.+.+...+.... + ++|+. |+ .|.-++-.++..+.+.| .++||-+.
T Consensus 78 ~~~s~~ei~~~l~~al~~vP---~---a~GvnNHmGS~~T~~~~~m~~vm~~l~~~g---------------L~fvDS~T 136 (245)
T 2nly_A 78 SNLSVGEVKSRVRKAFDDIP---Y---AVGLNNHMGSKIVENEKIMRAILEVVKEKN---------------AFIIDSGT 136 (245)
T ss_dssp TTCCHHHHHHHHHHHHHHST---T---CCEEEEEECTTGGGCHHHHHHHHHHHHHTT---------------CEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHCC---C---cEEEecccccchhcCHHHHHHHHHHHHHCC---------------CEEEcCCC
Confidence 34456777777777666531 1 22332 22 26666667776666553 36899987
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 133 R~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
-+.|. +.+.|+++|+|+...++ |......+.+...+.+. -+...|++.|. .|++||-+.+
T Consensus 137 s~~S~-----a~~~A~~~gvp~~~rdv---FLD~~~~~~~~I~~ql~--~a~~~A~~~G~-aIaIGhp~p~ 196 (245)
T 2nly_A 137 SPHSL-----IPQLAEELEVPYATRSI---FLDNTHSSRKEVIKNMR--KLAKKAKQGSE-PIGIGHVGVR 196 (245)
T ss_dssp CSSCS-----HHHHHHHTTCCEEECCE---ESCCTTCCHHHHHHHHH--HHHHHHHTTSC-CEEEEECSTT
T ss_pred CcccH-----HHHHHHHcCCCeEEeeE---ECCCCCCCHHHHHHHHH--HHHHHHhhcCc-EEEEECCCCC
Confidence 55443 56678899999977543 22221223444444433 37788888884 6999999987
No 86
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=53.11 E-value=52 Score=28.36 Aligned_cols=37 Identities=8% Similarity=-0.081 Sum_probs=27.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEE
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVD 129 (676)
++|+|++.|...|..++.....+.... ..+++++||-
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~----------~a~l~ll~v~ 41 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKL----------GAELDILAVL 41 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTT----------CCEEEEEEEC
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHc----------CCeEEEEEEe
Confidence 689999999999988776665554321 1278999985
No 87
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=49.81 E-value=59 Score=34.00 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=56.2
Q ss_pred CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC----CCcHHHHHHHHHHHHhcCCeE
Q 005804 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR----EESKEEANIVSHRVSDMGIRC 154 (676)
Q Consensus 79 i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR----~eS~~Eae~V~~l~~~LGI~~ 154 (676)
+..+++..+|||||.-=..+...|....... ..|. +++.+.+|-.+- ++|-. .+.+.+..+.+|+-
T Consensus 56 ~~~~~~~~l~LsgGsTP~~ly~~L~~~~~~~-------idw~-~V~~f~~DEr~vp~d~~~Sn~--~~~~~l~~~v~i~~ 125 (312)
T 3e15_A 56 SKEGGHVVIGLSGGKTPIDVYKNIALVKDIK-------IDTS-KLIFFIIDERYKRDDHKFSNY--NNIKFLFESLKINE 125 (312)
T ss_dssp HSTTCCCEEEECCSHHHHHHHHHHTTCCSSC-------CCGG-GCEEEESEEECCTTCCTTCHH--HHHHHHHHHTTCCH
T ss_pred hhhCCCEEEEEeCCCCHHHHHHHHHHhhccC-------CCcc-ceEEEEeeeecCCCCChHHHH--HHHHHHHhcCCCCc
Confidence 4556789999999966666655554221112 2333 788888885332 23322 23456778888862
Q ss_pred --EEEECccccCCCCCCChHHHHHHHHHHH-HHHHH-HHcCCCEEeecc
Q 005804 155 --EIVRCDWLDGRPKQGHLQEAARDMRYRL-FQKVC-IQHQIGVLLIAH 199 (676)
Q Consensus 155 --~iv~~~~~~~~~~~gn~E~~AR~iRY~~-L~~~A-~e~g~~~LatGH 199 (676)
.+...+ ...++++.|+. |+. +.+.. ..-++|.+++|=
T Consensus 126 ~~~i~~~~------g~~d~~~~a~~--Ye~~I~~~~~~~g~~DL~LLGi 166 (312)
T 3e15_A 126 KEQLYRPD------TSKNIVECVRD--YNEKIKNMVKKYTKVDIAILGM 166 (312)
T ss_dssp HHHEECCC------TTSCHHHHHHH--HHHHHHHHHHHHCSCCEEEECC
T ss_pred cccEEcCC------CCcCHHHHHHH--HHHHHHHHHhhcCCCcEEEEcc
Confidence 222211 11356766653 432 22222 234688888863
No 88
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=49.63 E-value=51 Score=33.64 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=71.7
Q ss_pred ccccHHHHHHHHHHHHHHcCCCCCCeEEEEEc---CC---hhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCC
Q 005804 59 YLTDMTKYREAFSRRMAMAGLKPHHRIALGVS---GG---PDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL 132 (676)
Q Consensus 59 ~~~~~~~~~~~~~~~i~~~~i~~~~rVlVAVS---GG---vDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGL 132 (676)
.....+++.+.+...+... |+ ++|+- |+ .|.-++-.++..+.+.| .++||-+.
T Consensus 105 ~~~s~~ei~~~l~~al~~v---P~---a~GvnNHmGS~~T~~~~~M~~vm~~L~~~g---------------L~FlDS~T 163 (261)
T 2qv5_A 105 AGDPAKVNIDRLHRSMAKI---TN---YTGVMNYLGGRFLAEQSALEPVMRDIGKRG---------------LLFLDDGS 163 (261)
T ss_dssp TTSCHHHHHHHHHHHHTTC---CC---CSEEEEEECTTGGGCHHHHHHHHHHHHHTT---------------CEEEECSC
T ss_pred CCCCHHHHHHHHHHHHHHC---CC---cEEEecccccchhcCHHHHHHHHHHHHHCC---------------CEEEcCCC
Confidence 3445677777776666542 11 22222 33 36666767776666554 36899997
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHH
Q 005804 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (676)
Q Consensus 133 R~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~L 209 (676)
-+.|. +.+.|+++|+|+...++ |... ..+.+...+. .+-+...|++.| ..|++||-+++-++.+.
T Consensus 164 s~~S~-----a~~~A~~~gvp~~~rdv---FLD~-~~~~~~I~~q--L~~a~~~Ar~~G-~AIaIGhp~p~Ti~aL~ 228 (261)
T 2qv5_A 164 SAQSL-----SGGIAKAISAPQGFADV---LLDG-EVTEASILRK--LDDLERIARRNG-QAIGVASAFDESIAAIS 228 (261)
T ss_dssp CTTCC-----HHHHHHHHTCCEEECSE---ETTS-SCSHHHHHHH--HHHHHHHHHHHS-EEEEEEECCHHHHHHHH
T ss_pred CcccH-----HHHHHHHcCCCeEEeee---ecCC-CCCHHHHHHH--HHHHHHHHHhcC-cEEEEeCCCHHHHHHHH
Confidence 65553 56678999999987543 2221 1233333333 233678899998 57999999998665443
No 89
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=48.93 E-value=4.1 Score=39.19 Aligned_cols=36 Identities=6% Similarity=-0.031 Sum_probs=24.3
Q ss_pred CCcccccccCCcceEeeeccCccccccccccCCCeeEeec
Q 005804 2 ARGSIVSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQY 41 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 41 (676)
.|++. +|+++.++|+|+.+.....+++ .+++||+||
T Consensus 149 ~H~~~---v~~~~~~~a~~~~g~~~~~~v~-~~~v~GvQF 184 (211)
T 4gud_A 149 VHSFA---MPVGDYTIAQCEYGQPFSAAIQ-AGNYYGVQF 184 (211)
T ss_dssp EESEE---CCCCTTEEEEEESSSEEEEEEE-ETTEEEESS
T ss_pred EeeEE---eCCCCeEEEEecCCCeEEEEEe-CCCEEEEEc
Confidence 35554 4778899999987754311332 348999999
No 90
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=47.20 E-value=43 Score=33.34 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=55.1
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC----C----CcH--------HH-HHHHHH
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR----E----ESK--------EE-ANIVSH 145 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR----~----eS~--------~E-ae~V~~ 145 (676)
++|+|++.|...|..++.....+.+.. ...++++||-.... . ... ++ .+..++
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRN----------GGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQ 77 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHH----------CCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHc----------CCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHH
Confidence 789999999999877766554443321 12789999843210 0 000 01 112222
Q ss_pred ---HHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccch
Q 005804 146 ---RVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203 (676)
Q Consensus 146 ---l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDD 203 (676)
.+...|+++.+.-. | .+++ ...+.+.+++.++|.|++|++...
T Consensus 78 ~~~~~~~~~v~~~~~~~-~------~g~~--------~~~i~~~a~~~~~DLiV~G~~g~~ 123 (319)
T 3olq_A 78 QARYYLEAGIQIDIKVI-W------HNRP--------YEAIIEEVITDKHDLLIKMAHQHD 123 (319)
T ss_dssp HHHHHHHTTCCEEEEEE-E------CSCH--------HHHHHHHHHHHTCSEEEEEEBCC-
T ss_pred HHHHHhhcCCeEEEEEE-e------cCCh--------HHHHHHHHHhcCCCEEEEecCcCc
Confidence 23345887765432 1 1222 234566788889999999998643
No 91
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=45.55 E-value=7.3 Score=40.63 Aligned_cols=36 Identities=14% Similarity=-0.081 Sum_probs=31.3
Q ss_pred CcccccccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 3 RGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 3 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
|.|.|.++| +..+||+|+.|++. ++..++ ..+++||
T Consensus 198 ~~~~v~~~p-ga~vLA~S~~~~~~--~~~~~~~~~~~vQg 234 (301)
T 2vdj_A 198 RESDIREVK-ELTLLANSEEAGVH--LVIGQEGRQVFALG 234 (301)
T ss_dssp CHHHHHTCT-TEEEEEEETTTEEE--EEEEGGGTEEEECS
T ss_pred CHHHccCCC-CCEEEEeCCCCcce--EEEecCCCEEEEEC
Confidence 567788886 99999999999998 877744 8999999
No 92
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=42.78 E-value=63 Score=33.30 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHHHHHHcC----C---CCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEEC-CC
Q 005804 61 TDMTKYREAFSRRMAMAG----L---KPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH-GL 132 (676)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~----i---~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDH-GL 132 (676)
...+++.+.|...-...+ + ....||+|-+||+- | .|-.|+..+.. | .++.++.+|.-|| .-
T Consensus 61 ~~~~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g-~-nl~~ll~~~~~-g--------~l~~~i~~Visn~p~~ 129 (288)
T 3obi_A 61 IPLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQSD-H-CLADILYRWRV-G--------DLHMIPTAIVSNHPRE 129 (288)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEETTSCEEEEEEECSCC-H-HHHHHHHHHHT-T--------SSCEEEEEEEESSCGG
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeeccCCCcEEEEEEcCCC-C-CHHHHHHHHHC-C--------CCCeEEEEEEcCCChh
Confidence 457888888865433322 1 23468999999984 3 45555555432 2 1223788888887 31
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHHH
Q 005804 133 REESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFI 209 (676)
Q Consensus 133 R~eS~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~L 209 (676)
+.++|+++|||++.++.. ..+ |..--..+.+..++++.|.++++....=.-+.++
T Consensus 130 ----------~~~~A~~~gIp~~~~~~~-------~~~-----r~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l 184 (288)
T 3obi_A 130 ----------TFSGFDFGDIPFYHFPVN-------KDT-----RRQQEAAITALIAQTHTDLVVLARYMQILSDEMS 184 (288)
T ss_dssp ----------GSCCTTTTTCCEEECCCC-------TTT-----HHHHHHHHHHHHHHHTCCEEEESSCCSCCCHHHH
T ss_pred ----------HHHHHHHcCCCEEEeCCC-------ccc-----HHHHHHHHHHHHHhcCCCEEEhhhhhhhCCHHHH
Confidence 234578899999876431 111 1111123556667889999999876443333333
No 93
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=41.14 E-value=2.3e+02 Score=27.81 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=54.3
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
.||+|-+||+- |- |-.|+... ..+ .++.++.+|.-|+. .+ .|.++|+++|||+++.+..
T Consensus 3 ~riavl~Sg~G-sn-l~ali~~~-~~~--------~l~~eI~~Visn~~---~a-----~v~~~A~~~gIp~~~~~~~-- 61 (211)
T 3p9x_A 3 KRVAIFASGSG-TN-AEAIIQSQ-KAG--------QLPCEVALLITDKP---GA-----KVVERVKVHEIPVCALDPK-- 61 (211)
T ss_dssp CEEEEECCTTC-HH-HHHHHHHH-HTT--------CCSSEEEEEEESCS---SS-----HHHHHHHTTTCCEEECCGG--
T ss_pred CEEEEEEeCCc-hH-HHHHHHHH-HcC--------CCCcEEEEEEECCC---Cc-----HHHHHHHHcCCCEEEeChh--
Confidence 57999999975 43 33444433 232 12337888777753 22 4888999999999776421
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 163 ~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
.. .+-++. -..+.+..++.+.|.++++....
T Consensus 62 ~~----~~r~~~-----d~~~~~~l~~~~~Dliv~agy~~ 92 (211)
T 3p9x_A 62 TY----PSKEAY-----EIEVVQQLKEKQIDFVVLAGYMR 92 (211)
T ss_dssp GS----SSHHHH-----HHHHHHHHHHTTCCEEEESSCCS
T ss_pred hc----Cchhhh-----HHHHHHHHHhcCCCEEEEeCchh
Confidence 10 111111 12345667788999999886543
No 94
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=40.11 E-value=38 Score=32.85 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=25.9
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEE
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD 129 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVD 129 (676)
++|+|++.|...|..++.....+.+.. ..+++++||-
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~ 37 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKL----------SAPLTVLFVV 37 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHH----------TCCEEEEEEE
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHh----------CCcEEEEEEe
Confidence 479999999999987776655443321 1268888874
No 95
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=39.93 E-value=68 Score=31.93 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=28.4
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEEC
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDH 130 (676)
.++|+||+.|+..|..++..+..+.... ..+++++||..
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~~----------~a~l~ll~v~~ 209 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASRR----------NVDLVALHAWS 209 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHHT----------TCCEEEEEESC
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHhc----------CCEEEEEEEee
Confidence 4789999999999987776665554321 12789999854
No 96
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=39.51 E-value=52 Score=33.92 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHcC-------CCCCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCC
Q 005804 63 MTKYREAFSRRMAMAG-------LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREE 135 (676)
Q Consensus 63 ~~~~~~~~~~~i~~~~-------i~~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~e 135 (676)
.+++.+.|.+.-...+ -....||+|-+||+- +.|-.|+..+.... ++.++.+|.-||.-
T Consensus 62 ~~~L~~~f~~la~~~~m~~~l~~~~~~~ri~vl~Sg~g--~nl~~ll~~~~~g~---------l~~~i~~Visn~~~--- 127 (287)
T 3nrb_A 62 VNDFNSAFGKVVEKYNAEWWFRPRTDRKKVVIMVSKFD--HCLGDLLYRHRLGE---------LDMEVVGIISNHPR--- 127 (287)
T ss_dssp -CHHHHHHHHHHGGGTCEEEEEETTCCCEEEEEECSCC--HHHHHHHHHHHHTS---------SCCEEEEEEESSCG---
T ss_pred HHHHHHHHHHHHHHcCCeeEeeccCCCcEEEEEEeCCC--cCHHHHHHHHHCCC---------CCeEEEEEEeCChH---
Confidence 4467777654333221 124578999999984 45556666554321 23378888888841
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHH
Q 005804 136 SKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (676)
Q Consensus 136 S~~Eae~V~~l~~~LGI~~~iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~ 208 (676)
+ +.++|+++|||++.++... .+ |..--..+.+..++++.|.++++....=.-+.+
T Consensus 128 ----a--~~~~A~~~gIp~~~~~~~~-------~~-----r~~~~~~~~~~l~~~~~Dlivlagym~il~~~~ 182 (287)
T 3nrb_A 128 ----E--ALSVSLVGDIPFHYLPVTP-------AT-----KAAQESQIKNIVTQSQADLIVLARYMQILSDDL 182 (287)
T ss_dssp ----G--GCCCCCCTTSCEEECCCCG-------GG-----HHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHH
T ss_pred ----H--HHHHHHHcCCCEEEEeccC-------cc-----hhhHHHHHHHHHHHhCCCEEEhhhhhhhcCHHH
Confidence 1 5567888999998764311 11 111112355667788999999987644333333
No 97
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=39.24 E-value=37 Score=33.50 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCCC
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGF 110 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~ 110 (676)
++++|+||+|||.-..-...|+..+++.|.
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~g~ 32 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQEER 32 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCC
Confidence 348999999999999998888888776653
No 98
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=37.61 E-value=16 Score=38.26 Aligned_cols=36 Identities=8% Similarity=-0.129 Sum_probs=28.5
Q ss_pred CcccccccCCcceEeeeccCccccccccccCC-CeeEeec
Q 005804 3 RGSIVSAQSRTTSTLLSTLVARLSLSSVKCRI-PFTRSQY 41 (676)
Q Consensus 3 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~ 41 (676)
|.|.|... ++..+||+|+.|++. ++..++ ..+++||
T Consensus 209 ~~~~v~~~-pga~vLA~S~~~~~q--~~~~~~~~~~~vQg 245 (312)
T 2h2w_A 209 KKEDIDKV-PELEILAESDEAGVY--VVANKSERQIFVTG 245 (312)
T ss_dssp CHHHHTTC-C-CEEEEEETTTEEE--EEECSSSSEEEECS
T ss_pred CHHHccCC-CCCEEEEcCCCCcce--EEEecCCCEEEEEC
Confidence 34556666 499999999999999 887745 8999999
No 99
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=37.36 E-value=1.8e+02 Score=28.52 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=53.4
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
.||+|-+||....+.. ++..+.. . +..++.+|.-|+. + .+.++|+++|||++..+..
T Consensus 13 ~ri~vl~SG~gsnl~a--ll~~~~~-~---------~~~eI~~Vis~~~-a--------~~~~~A~~~gIp~~~~~~~-- 69 (215)
T 3da8_A 13 ARLVVLASGTGSLLRS--LLDAAVG-D---------YPARVVAVGVDRE-C--------RAAEIAAEASVPVFTVRLA-- 69 (215)
T ss_dssp EEEEEEESSCCHHHHH--HHHHSST-T---------CSEEEEEEEESSC-C--------HHHHHHHHTTCCEEECCGG--
T ss_pred cEEEEEEeCChHHHHH--HHHHHhc-c---------CCCeEEEEEeCCc-h--------HHHHHHHHcCCCEEEeCcc--
Confidence 4899999998654433 3333221 1 2236777776664 2 2577899999999876432
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 163 ~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
.. .+-++. -..+.+..++++.|.++++....
T Consensus 70 ~~----~~r~~~-----d~~~~~~l~~~~~Dlivlagy~~ 100 (215)
T 3da8_A 70 DH----PSRDAW-----DVAITAATAAHEPDLVVSAGFMR 100 (215)
T ss_dssp GS----SSHHHH-----HHHHHHHHHTTCCSEEEEEECCS
T ss_pred cc----cchhhh-----hHHHHHHHHhhCCCEEEEcCchh
Confidence 11 111111 22355667788999999877543
No 100
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=37.09 E-value=2e+02 Score=27.95 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=52.5
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
.||+|-+||..+-+.. ++..+.... +..++.+|.-|+. .. .+.++|+++|||++.++-.
T Consensus 4 ~ki~vl~sG~g~~~~~--~l~~l~~~~---------l~~~I~~Vit~~~---~~-----~v~~~A~~~gIp~~~~~~~-- 62 (212)
T 3av3_A 4 KRLAVFASGSGTNFQA--IVDAAKRGD---------LPARVALLVCDRP---GA-----KVIERAARENVPAFVFSPK-- 62 (212)
T ss_dssp EEEEEECCSSCHHHHH--HHHHHHTTC---------CCEEEEEEEESST---TC-----HHHHHHHHTTCCEEECCGG--
T ss_pred cEEEEEEECCcHHHHH--HHHHHHhCC---------CCCeEEEEEeCCC---Cc-----HHHHHHHHcCCCEEEeCcc--
Confidence 4799999999764432 333333221 1226767666642 22 4788999999999765421
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccc
Q 005804 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202 (676)
Q Consensus 163 ~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaD 202 (676)
.. .+.++.- ..+.+..++++.|.++++...-
T Consensus 63 ~~----~~~~~~~-----~~~~~~l~~~~~Dliv~a~y~~ 93 (212)
T 3av3_A 63 DY----PSKAAFE-----SEILRELKGRQIDWIALAGYMR 93 (212)
T ss_dssp GS----SSHHHHH-----HHHHHHHHHTTCCEEEESSCCS
T ss_pred cc----cchhhhH-----HHHHHHHHhcCCCEEEEchhhh
Confidence 10 1112111 1244566778999999886543
No 101
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=35.44 E-value=8.9 Score=36.65 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=25.6
Q ss_pred CCcccccccCCcceEeeeccC--ccccccccccCCCeeEeecc
Q 005804 2 ARGSIVSAQSRTTSTLLSTLV--ARLSLSSVKCRIPFTRSQYL 42 (676)
Q Consensus 2 s~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~q~~ 42 (676)
.|++.+ ..+++ .+ |+|+. +++. ++...++++|+||-
T Consensus 141 ~Hs~~~-~~~~~-~v-a~s~~~g~~~~--~~~~~~~i~gvQfH 178 (200)
T 1ka9_H 141 ANSYYG-PLTPY-SL-GKGEYEGTPFT--ALLAKENLLAPQFH 178 (200)
T ss_dssp EESEEC-CCCTT-CC-EEEEETTEEEE--EEEECSSEEEESSC
T ss_pred eccccc-CCCCC-cE-EEEEeCCeEEE--EEEeeCCEEEEecC
Confidence 588888 65554 56 88876 4555 55565699999993
No 102
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=34.71 E-value=2.2e+02 Score=28.80 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=54.1
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhh-CCCCCCCCCCCCCCcEEEEEEE--CCCCC---CcHHHHHHHHHHHHhcCCeEE
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVD--HGLRE---ESKEEANIVSHRVSDMGIRCE 155 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~-~g~~~~~~~~g~~~~L~aVhVD--HGLR~---eS~~Eae~V~~l~~~LGI~~~ 155 (676)
+....||||||.-=..+...|..... ... .|. +++.+.+| .|+-+ +| ......+.++.+++++..
T Consensus 32 ~~~~~lglsgGsTp~~~~~~L~~~~~~~~i-------~~~-~v~v~~lDEr~gv~~~~~~S-n~~~~~~~l~~~~~~~~~ 102 (289)
T 1ne7_A 32 EKYFTLGLPTGSTPLGCYKKLIEYYKNGDL-------SFK-YVKTFNMDEYVGLPRDHPES-YHSFMWNNFFKHIDIHPE 102 (289)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHHHTTSC-------CCT-TEEEEESEEETTSCTTSTTS-HHHHHHHHTGGGSCCCGG
T ss_pred CCCEEEEEcCCccHHHHHHHHHhhhhccCC-------Cch-heEEEeCceeecCCCCcHHH-HHHHHHHHhhccCCCCHH
Confidence 34489999999755555544543211 112 222 78899999 66642 23 223334457777887654
Q ss_pred EEECccccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccc
Q 005804 156 IVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (676)
Q Consensus 156 iv~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHh 200 (676)
.+..... ...++++.| .+|+-..+. ..++|.+++|=-
T Consensus 103 ~i~~p~~----~~~~~e~~~--~~ye~~i~~--~~~~Dl~lLGiG 139 (289)
T 1ne7_A 103 NTHILDG----NAVDLQAEC--DAFEEKIKA--AGGIELFVGGIG 139 (289)
T ss_dssp GEECCCT----TCSSHHHHH--HHHHHHHHH--TTSCSEEEECCC
T ss_pred HEecCCC----CCCCHHHHH--HHHHHHHHh--cCCCCEEEEccC
Confidence 3332210 112566655 334332221 136788887743
No 103
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=33.13 E-value=3.2e+02 Score=26.47 Aligned_cols=89 Identities=11% Similarity=0.195 Sum_probs=50.6
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
.||++.+||..+-+. .++..+...+ +..++.+|.-|.. .. .+.++|+++|||+.+++-.
T Consensus 2 ~rI~vl~SG~g~~~~--~~l~~l~~~~---------~~~~i~~Vvs~~~---~~-----~~~~~A~~~gIp~~~~~~~-- 60 (216)
T 2ywr_A 2 LKIGVLVSGRGSNLQ--AIIDAIESGK---------VNASIELVISDNP---KA-----YAIERCKKHNVECKVIQRK-- 60 (216)
T ss_dssp EEEEEEECSCCHHHH--HHHHHHHTTS---------SCEEEEEEEESCT---TC-----HHHHHHHHHTCCEEECCGG--
T ss_pred CEEEEEEeCCcHHHH--HHHHHHHhCC---------CCCeEEEEEeCCC---Ch-----HHHHHHHHcCCCEEEeCcc--
Confidence 379999999875433 2333332221 1125666666642 22 3678899999999765421
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc
Q 005804 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (676)
Q Consensus 163 ~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha 201 (676)
.. .+-++. -..+.+..++.+.|.++++...
T Consensus 61 ~~----~~r~~~-----~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 61 EF----PSKKEF-----EERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp GS----SSHHHH-----HHHHHHHHHHTTCCEEEESSCC
T ss_pred cc----cchhhh-----hHHHHHHHHhcCCCEEEEeCch
Confidence 11 111111 1224456677899999987653
No 104
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=31.59 E-value=58 Score=31.48 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=22.2
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g 109 (676)
++|++|+|||....-...++..+.+.|
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~g 28 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEELD 28 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHTT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 589999999999887778887776654
No 105
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=29.58 E-value=79 Score=31.49 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=27.2
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEEC
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDH 130 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDH 130 (676)
.++|+|++.|...|..++.....+.+.. ..+++++||-.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~----------~a~l~ll~v~~ 57 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELR----------KIPLTLVHAVS 57 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHH----------TCCEEEEEECC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc----------CCcEEEEEEec
Confidence 4789999999999987766544443321 12688999753
No 106
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=26.67 E-value=55 Score=31.31 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=22.3
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g 109 (676)
++|++|+|||.-..-...++..+++.|
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~L~~~g 32 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIELKSKF 32 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHHHTTTC
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHHCC
Confidence 789999999999888778887766554
No 107
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=26.55 E-value=47 Score=31.91 Aligned_cols=27 Identities=4% Similarity=0.010 Sum_probs=22.3
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCC
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGG 109 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g 109 (676)
+||++|+|||....-...++..+.+.|
T Consensus 3 k~IllgvTGs~aa~k~~~l~~~L~~~g 29 (181)
T 1g63_A 3 GKLLICATASINVININHYIVELKQHF 29 (181)
T ss_dssp CCEEEEECSCGGGGGHHHHHHHHTTTS
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 589999999999988888887775543
No 108
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=25.76 E-value=1.1e+02 Score=29.37 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=54.1
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECc
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD 160 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~ 160 (676)
+.++|++|+.|+.+|..++..+..+.... ..+++++||...- .+..+..+.+.+.++..|++..+.-.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~----------~a~l~ll~v~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~- 220 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARAL----------GLGVRVVSVHEDP-ARAEAWALEAEAYLRDHGVEASALVL- 220 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHH----------TCCEEEEEECSSH-HHHHHHHHHHHHHHHHTTCCEEEEEE-
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcC----------CCEEEEEEEcCcH-HHHHHHHHHHHHHHHHcCCceEEEEe-
Confidence 44799999999999987766544433210 1168899996532 11223344555566677888654321
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecc
Q 005804 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAH 199 (676)
Q Consensus 161 ~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGH 199 (676)
.|++.+ .+.+++++. +.|++|+
T Consensus 221 -------~g~~~~--------~i~~~a~~~--dliV~G~ 242 (268)
T 3ab8_A 221 -------GGDAAD--------HLLRLQGPG--DLLALGA 242 (268)
T ss_dssp -------CSCHHH--------HHHHHCCTT--EEEEEEC
T ss_pred -------CCChHH--------HHHHHHHhC--CEEEECC
Confidence 133322 344556665 9999998
No 109
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=24.83 E-value=2.5e+02 Score=27.77 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=51.1
Q ss_pred CeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECccc
Q 005804 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWL 162 (676)
Q Consensus 83 ~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~~~ 162 (676)
.||++.+||..+-+. .++..+.... +..++.+|.-|.. .. .+.++|+++|||+++++-.
T Consensus 23 ~rI~~l~SG~g~~~~--~~l~~l~~~~---------~~~~I~~Vvt~~~---~~-----~~~~~A~~~gIp~~~~~~~-- 81 (229)
T 3auf_A 23 IRIGVLISGSGTNLQ--AILDGCREGR---------IPGRVAVVISDRA---DA-----YGLERARRAGVDALHMDPA-- 81 (229)
T ss_dssp EEEEEEESSCCHHHH--HHHHHHHTTS---------SSEEEEEEEESST---TC-----HHHHHHHHTTCEEEECCGG--
T ss_pred cEEEEEEeCCcHHHH--HHHHHHHhCC---------CCCeEEEEEcCCC---ch-----HHHHHHHHcCCCEEEECcc--
Confidence 489999999975432 2333332221 1126667666632 22 3678899999998765421
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeecccc
Q 005804 163 DGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201 (676)
Q Consensus 163 ~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHha 201 (676)
.. .+-++. -..+.+..++.+.|+++++...
T Consensus 82 ~~----~~r~~~-----~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 82 AY----PSRTAF-----DAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp GS----SSHHHH-----HHHHHHHHHHTTCSEEEESSCC
T ss_pred cc----cchhhc-----cHHHHHHHHhcCCCEEEEcChh
Confidence 10 111111 1224456677899999998654
No 110
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=23.98 E-value=1.6e+02 Score=25.73 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=40.9
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCC-------------CCcHHHHHHHHHHH
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-------------EESKEEANIVSHRV 147 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR-------------~eS~~Eae~V~~l~ 147 (676)
+.-+|++..+||.-|+.|+.-+.++..+ .|+ ++.+..+..+-- |.-.-..+.+++.+
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~--------~gi--~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~ 74 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANL--------TEV--RVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDA 74 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHH--------HTC--SEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH--------CCC--ceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHh
Confidence 4468999999999777776656555443 122 333433444321 11112245577778
Q ss_pred HhcCCeEEEEEC
Q 005804 148 SDMGIRCEIVRC 159 (676)
Q Consensus 148 ~~LGI~~~iv~~ 159 (676)
...|+|+.+++-
T Consensus 75 ~~~~ipV~vI~~ 86 (108)
T 3nbm_A 75 ERLGIQIVATRG 86 (108)
T ss_dssp TTTTCEEEECCH
T ss_pred hhcCCcEEEeCH
Confidence 888999887653
No 111
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.72 E-value=1.5e+02 Score=28.36 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=8.7
Q ss_pred HHHHHHHcCCCEEeeccc
Q 005804 183 FQKVCIQHQIGVLLIAHH 200 (676)
Q Consensus 183 L~~~A~e~g~~~LatGHh 200 (676)
+.+.|++.|++.++.-..
T Consensus 29 i~~~~~~~g~~~~~~~~~ 46 (276)
T 3jy6_A 29 ISSILESRGYIGVLFDAN 46 (276)
T ss_dssp HHHHHHTTTCEEEEEECT
T ss_pred HHHHHHHCCCEEEEEeCC
Confidence 444555555555444333
No 112
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=23.59 E-value=26 Score=39.54 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=25.8
Q ss_pred CCcceEeeeccCc-cccccccccCC-Cee-Eeec
Q 005804 11 SRTTSTLLSTLVA-RLSLSSVKCRI-PFT-RSQY 41 (676)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~q~ 41 (676)
++++.++|.+.++ .+. ++.+++ ++| |+||
T Consensus 483 ~~gl~v~a~s~dg~~VE--aie~~~~p~flGVQF 514 (545)
T 1s1m_A 483 DAGLRVAGRSGDDQLVE--IIEVPNHPWFVACQF 514 (545)
T ss_dssp HTTCEEEEECSSSCCEE--EEECTTSSSEEEESS
T ss_pred cCCeEEEEECCCCCceE--EEEeCCCCEEEEEeC
Confidence 4899999999998 788 888887 888 9999
No 113
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=23.36 E-value=58 Score=32.06 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=19.9
Q ss_pred CCeEEEEEcCChhHHH-HHHHHHhhhhCC
Q 005804 82 HHRIALGVSGGPDSMA-LCVLTAGWKTGG 109 (676)
Q Consensus 82 ~~rVlVAVSGGvDSma-Ll~LL~~~~~~g 109 (676)
+++|++|+|||.-..- .+.++..+++.|
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~~g 33 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIAEG 33 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHhCC
Confidence 5899999999974432 456677666654
No 114
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=23.30 E-value=3.7e+02 Score=27.40 Aligned_cols=101 Identities=14% Similarity=0.226 Sum_probs=53.8
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhh-CCCCCCCCCCCCCCcEEEEEEEC--CCCCCcHH-HHHHHHH-HHHhcCCeEEE
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKT-GGFNQNGEAGEFIDGLLAITVDH--GLREESKE-EANIVSH-RVSDMGIRCEI 156 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~-~g~~~~~~~~g~~~~L~aVhVDH--GLR~eS~~-Eae~V~~-l~~~LGI~~~i 156 (676)
+++..+|+|||.-=..+...|.+... ... .|. +++.+.+|- |+-++..+ -..++++ +....+|+-.-
T Consensus 53 ~~~~~l~LsgGsTP~~~y~~L~~~~~~~~i-------dw~-~v~~f~~DEr~gvp~~~~~Sn~~~~~~~Ll~~v~i~~~~ 124 (289)
T 3hn6_A 53 ENPFILGLPTGSSPIGMYKNLIELNKNKKI-------SFQ-NVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKEN 124 (289)
T ss_dssp TBCEEEEECCSSTTHHHHHHHHHHHHTTSC-------CCT-TEEEEESEEESSCCTTSTTSHHHHHHHHTGGGSCCCGGG
T ss_pred CCcEEEEECCCccHHHHHHHHHHhHhhcCC-------Cch-heEEEeCcceecCCCCcHHHHHHHHHHHhhccCCCCHHH
Confidence 34689999999766666555544322 222 232 788889987 55432211 2234444 55666765322
Q ss_pred EECccccCCCCCCChHHHHHHHHHHHHHHHHHHc-CCCEEeecc
Q 005804 157 VRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH-QIGVLLIAH 199 (676)
Q Consensus 157 v~~~~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~-g~~~LatGH 199 (676)
+..- .....++++.|+. |.. ..++. ++|.+++|=
T Consensus 125 i~~~----~~~~~d~~~~a~~--Ye~---~i~~~~~~Dl~lLGm 159 (289)
T 3hn6_A 125 INIL----NGNASNLKKECEE--YEK---KIKSFGGIMLFVGGI 159 (289)
T ss_dssp EECC----CTTCSSHHHHHHH--HHH---HHHHTTSCSEEEEEC
T ss_pred eecC----CCCCCCHHHHHHH--HHH---HHhhcCCCCEEEEcc
Confidence 2111 0112356777654 432 22333 689888874
No 115
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=23.13 E-value=51 Score=32.00 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=22.1
Q ss_pred CCeEEEEEcCChhHHHHHHHHHhhhhCC
Q 005804 82 HHRIALGVSGGPDSMALCVLTAGWKTGG 109 (676)
Q Consensus 82 ~~rVlVAVSGGvDSmaLl~LL~~~~~~g 109 (676)
+++|+||+|||.-..-...++..+.+.|
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~~g 35 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKSFF 35 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTTTS
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHCC
Confidence 4799999999998887777777765443
No 116
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=22.87 E-value=51 Score=32.24 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCChhHH-HHHHHHHhhhhCC
Q 005804 81 PHHRIALGVSGGPDSM-ALCVLTAGWKTGG 109 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSm-aLl~LL~~~~~~g 109 (676)
.+++|+||+|||.-.. -.+.++..+.+.|
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g 35 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVELG 35 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHTT
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhCC
Confidence 3589999999997766 5666777766654
No 117
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=22.13 E-value=17 Score=41.04 Aligned_cols=31 Identities=13% Similarity=0.026 Sum_probs=26.0
Q ss_pred ccC-CcceEeeeccCc------cccccccccCC-Cee-Eeec
Q 005804 9 AQS-RTTSTLLSTLVA------RLSLSSVKCRI-PFT-RSQY 41 (676)
Q Consensus 9 ~~~-~~~~~~~~~~~~------~~~~~~~~~~~-~~~-~~q~ 41 (676)
.+| +++.++|.+.++ .+. ++.+++ ++| |+||
T Consensus 482 ~l~~~gl~v~a~s~dG~g~~~~~Ve--aIe~~~~p~fvGVQF 521 (550)
T 1vco_A 482 GLERAGLVVSATTPGMRGRGAGLVE--AIELKDHPFFLGLQS 521 (550)
T ss_dssp HHHHHTEEEEEECCCBTTBSTTCEE--EEEETTSSSEEEESS
T ss_pred ccccCCeEEEEEeCCCCccCCCcEE--EEEeCCCCEEEEEEe
Confidence 455 799999999884 677 888887 888 9999
No 118
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=21.34 E-value=51 Score=32.31 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhh
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKT 107 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~ 107 (676)
.+++|+||+|||....-...++..+.+
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~ 44 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLD 44 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC-
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhc
Confidence 357899999999998877777777654
No 119
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=21.12 E-value=2e+02 Score=28.21 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHHHhcCCeEEEEECc
Q 005804 81 PHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD 160 (676)
Q Consensus 81 ~~~rVlVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVDHGLR~eS~~Eae~V~~l~~~LGI~~~iv~~~ 160 (676)
+..||+|-+||+..-+.. ++..+. .+ ++..++.+|.-|+. ... ..++|+++|||++..+-.
T Consensus 7 ~~~ri~vl~SG~gsnl~a--ll~~~~-~~--------~~~~~I~~Vis~~~---~a~-----~l~~A~~~gIp~~~~~~~ 67 (215)
T 3kcq_A 7 KELRVGVLISGRGSNLEA--LAKAFS-TE--------ESSVVISCVISNNA---EAR-----GLLIAQSYGIPTFVVKRK 67 (215)
T ss_dssp CCEEEEEEESSCCHHHHH--HHHHTC-CC---------CSEEEEEEEESCT---TCT-----HHHHHHHTTCCEEECCBT
T ss_pred CCCEEEEEEECCcHHHHH--HHHHHH-cC--------CCCcEEEEEEeCCc---chH-----HHHHHHHcCCCEEEeCcc
Confidence 346899999998544332 333322 21 12337777777753 211 356789999999865421
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccccchhHHHH
Q 005804 161 WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELF 208 (676)
Q Consensus 161 ~~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHhaDDqaET~ 208 (676)
.-+- ..+.+..++++.|.++++....=.-+.+
T Consensus 68 -------~~~~---------~~~~~~L~~~~~Dlivlagy~~IL~~~~ 99 (215)
T 3kcq_A 68 -------PLDI---------EHISTVLREHDVDLVCLAGFMSILPEKF 99 (215)
T ss_dssp -------TBCH---------HHHHHHHHHTTCSEEEESSCCSCCCHHH
T ss_pred -------cCCh---------HHHHHHHHHhCCCEEEEeCCceEeCHHH
Confidence 0011 3345566788999999886643333333
No 120
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=20.71 E-value=5e+02 Score=24.82 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=51.3
Q ss_pred EEEEcCChhHHHHHHHHHhhhhCCCCCCCCCCCCCCcEEEEEEE--CCCCCC--cHHHHHHHHHHHHhcCCeEEEEECcc
Q 005804 86 ALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVD--HGLREE--SKEEANIVSHRVSDMGIRCEIVRCDW 161 (676)
Q Consensus 86 lVAVSGGvDSmaLl~LL~~~~~~g~~~~~~~~g~~~~L~aVhVD--HGLR~e--S~~Eae~V~~l~~~LGI~~~iv~~~~ 161 (676)
.||||||.-=..+...|.. ... .|. +++.+.+| .|+-+. ........+.++++++++...+..
T Consensus 31 ~i~ls~G~T~~~~~~~L~~---~~~-------~~~-~v~v~~ldEr~gv~~~~~~sn~~~~~~~l~~~~~~~~~~~~~-- 97 (234)
T 2ri0_A 31 TLGLATGSTPLELYKEIRE---SHL-------DFS-DMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFKKSYLPN-- 97 (234)
T ss_dssp EEEECCSSTTHHHHHHHHT---SCC-------CCT-TCEEEESEEETTCCTTSTTSHHHHHHHHTTTTSCCSEEECCC--
T ss_pred EEEEcCCCCHHHHHHHHHh---cCC-------Chh-heEEEeCeeecCCCCCChHHHHHHHHHHHhccCCCcHhhcCC--
Confidence 8999999755555444432 111 121 67888888 466422 112333445577888988773321
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEeeccc
Q 005804 162 LDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHH 200 (676)
Q Consensus 162 ~~~~~~~gn~E~~AR~iRY~~L~~~A~e~g~~~LatGHh 200 (676)
+...++++.+ .+|+-..+. .++|.+++|=-
T Consensus 98 ----~~~~~~~~~~--~~y~~~i~~---~~~Dl~llGiG 127 (234)
T 2ri0_A 98 ----GLAADLAKET--EYYDQILAQ---YPIDLQILGIG 127 (234)
T ss_dssp ----TTCSCHHHHH--HHHHHHHHH---SCCSEEEECCC
T ss_pred ----CCCCCHHHHH--HHHHHHHHh---CCCCEEEEccC
Confidence 1223566654 344432222 57888888754
Done!