RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 005804
(676 letters)
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A {Aquifex
aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Length = 317
Score = 176 bits (449), Expect = 3e-50
Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 30/213 (14%)
Query: 79 LKPHHRIALGVSGGPDSMAL-CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESK 137
R+ + SGG DS+ L VL + + +H LRE ++
Sbjct: 21 FSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKE----------VALAHFNHMLRESAE 70
Query: 138 EEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVLL 196
+ + ++ + + D + L+EA R +RY+ +++ +
Sbjct: 71 RDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIA 130
Query: 197 IAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF 256
AHH +D E +L +R +G+ GL G + ++ RPL
Sbjct: 131 TAHHLNDLLETSLLFFTRGTGLDGLIGFLPKEE------------------VIRRPLYYV 172
Query: 257 SKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
+ ++ + + WVED TN RNRIR
Sbjct: 173 KRSEIEEYAKFKGLRWVEDETNYEVSIPRNRIR 205
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 178 bits (454), Expect = 2e-49
Identities = 66/214 (30%), Positives = 91/214 (42%), Gaps = 28/214 (13%)
Query: 79 LKPHHRIALGVSGGPDSMAL-CVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLR-EES 136
L + +GVSGGPDS+AL V + ++A VDH R ES
Sbjct: 15 LSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQ-----------VIAAHVDHMFRGRES 63
Query: 137 KEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGH-LQEAARDMRYRLFQKVCIQHQIGVL 195
+EE V + I CE + D + G QEAAR RYR F ++ +HQ G +
Sbjct: 64 EEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYV 123
Query: 196 LIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLD 255
+ HH DDQ E ++RL R S G AG+ Y L+RP L
Sbjct: 124 AVGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGY--------------LIRPFLA 169
Query: 256 FSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
S+ ++ C+ DP+N + RNR R
Sbjct: 170 VSRAEIEAYCRQMGLSPRCDPSNEKDDYTRNRFR 203
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase,
PP-type, putative cell cycle PR PSI, protein structure
initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2
c.26.2.5 d.229.1.1
Length = 433
Score = 176 bits (448), Expect = 5e-49
Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L +I + SGG DS L W+T L AI V HGL +
Sbjct: 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVA---------LRAIHVHHGLSANADA 60
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ + + R + G ++ AR RY+ F + + VL+ A
Sbjct: 61 WVTHCENVCQQWQVPLVVERVQL--AQEGLG-IEAQARQARYQAFARTLLPG--EVLVTA 115
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H DDQ E F+L L R SG GL+ MA S+ L+RPLL ++
Sbjct: 116 QHLDDQCETFLLALKRGSGPAGLSAMAEVSEF--------------AGTRLIRPLLARTR 161
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
++ + + + W+ED +N+ + RN +R
Sbjct: 162 GELVQWARQYDLRWIEDESNQDDSYDRNFLR 192
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 2e-11
Identities = 97/615 (15%), Positives = 178/615 (28%), Gaps = 217/615 (35%)
Query: 25 LSLS--SVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSRRMAMAGLKPH 82
L+LS S++ + +P+ S A ++ +E F++ + P
Sbjct: 9 LTLSHGSLEHVLL------VPTA------SFFIA-------SQLQEQFNKIL------PE 43
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGF----NQNGEAGEFIDGLLAITVD--------- 129
P + A L K G+ + + G+F L +
Sbjct: 44 PTEGFAADDEPTTPA--ELVG--KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 130 --HGLREESKEEANIVSHRVSDMGIRCEIVRC----DWLDGRPKQGHLQEAARDMRYRLF 183
H L A ++ + + E+++ + RP A LF
Sbjct: 100 DIHAL------AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-------LF 146
Query: 184 QKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGMAFSSQ------------IF 231
+ V + A+L + F Q ++
Sbjct: 147 RAV--------------GEGNAQLVAI---------------FGGQGNTDDYFEELRDLY 177
Query: 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGN-RDWVEDPTNRSPLFVRNRIRM 290
+Y D +K + L L+ + D QG N +W+E+P + +P
Sbjct: 178 QTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFTQGLNILEWLENP-SNTP--------- 226
Query: 291 SLGDLSSC--SFK--SELQAV--ISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEI 344
L S S +Q + + + S L + T QG ++
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL--KGATGHSQG--LVTAVA 282
Query: 345 LNPSKIEDIFL---SKFLALVLQFI---CQRQRP-------------------------V 373
+ + + F K + + L FI C P +
Sbjct: 283 IAETDSWESFFVSVRKAITV-LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 374 RGSTSKLLLHYIRTFPCKTSLTAAGCYLCPTPGSR--------GTKALVCSSIDGPLPSK 425
T + + Y+ +L P + G K LV S GP P
Sbjct: 342 SNLTQEQVQDYVNKT---------NSHL---PAGKQVEISLVNGAKNLVVS---GP-PQS 385
Query: 426 LELFQIHSDGEQRHCVTDVEQ--IL--EDAKSYSN-----------HLIQDASDKLLLSM 470
L + + + ++Q I E +SN HL+ ASD + +
Sbjct: 386 LYGLNLTL--RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 471 ISDSVPTEAKRFNMLSESTY---------KNILLLQREEIKRFKLDSEVTSDSQLMHAVE 521
+ ++V AK + T+ +I + I R + E T+ + H ++
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 522 CVGTYPSIPLQPGQV 536
G PG
Sbjct: 504 F-G--------PGGA 509
Score = 53.9 bits (129), Expect = 2e-07
Identities = 86/608 (14%), Positives = 160/608 (26%), Gaps = 244/608 (40%)
Query: 126 ITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCD------------WLDGRPK-QGHLQ 172
+T+ HG S E +V ++ D P L
Sbjct: 9 LTLSHG----SLEHVLLVPT---ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL- 60
Query: 173 EAARDMRY--RLFQKVCIQHQIGVLLIAHHADDQAEL-------FILRLSRNSGVLGLAG 223
+ + Y L + + VL + + L +L + +
Sbjct: 61 -VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND----TT 115
Query: 224 MAFSSQIFSSYAYSCHDDLKNHSILLVRP--LLDFSKDDMYKIC-----QGGNRDWVEDP 276
+ + ++ +Y + + L + ++ QG D+ E+
Sbjct: 116 LVKTKELIKNYITARI--MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE- 172
Query: 277 TNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQG 336
L DL ++ + +I T S LI +
Sbjct: 173 ---------------LRDLYQ-TYHVLVGDLIKFSAET-------LSELIRTTLDAEKVF 209
Query: 337 YAVIDLE--ILNPSKI--EDIFLSKFLALVLQFICQRQRPVRGSTSKLLLHYIRTFPCKT 392
+++ + NPS +D LS ++ L + Q L HY+ T K
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ------------LAHYVVT--AKL 255
Query: 393 SLTAAGCYLCPTPGS-----RGTK--------ALVCS------SIDGPLPSKLE-LFQIH 432
G TPG +G A+ + S + + LF I
Sbjct: 256 L----GF----TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 433 SDGEQRHCVTDVEQILEDAKSYSNHLIQDASDKLLLSMISDSVPTEAKRFNMLSESTYKN 492
+ + T + +++D+ + ++ VP+ MLS
Sbjct: 308 VRCYEAYPNTSLPP----------SILEDSLE------NNEGVPSP-----MLS------ 340
Query: 493 ILLLQREEIKRF--KLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVTWKLI 550
I L +E+++ + K +S + + Q+ I L
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQV-----------EISLV------------------ 371
Query: 551 KENGSRAF-----PREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMIESDWLYLAKLS 605
NG++ P+ LY
Sbjct: 372 --NGAKNLVVSGPPQS-------------------------------------LY----- 387
Query: 606 KGLSSGNLPLERVFIDEKTGQ-KVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVLV 664
GL NL L + Q ++ ++R + R LPV
Sbjct: 388 -GL---NLTLRKAKAPSGLDQSRIP-----------FSERK-------LKFSNRFLPVAS 425
Query: 665 SSHGQLLS 672
H LL
Sbjct: 426 PFHSHLLV 433
Score = 50.4 bits (120), Expect = 2e-06
Identities = 93/530 (17%), Positives = 145/530 (27%), Gaps = 191/530 (36%)
Query: 7 VSAQSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPS--IRLFCKCSHAHAVEYLTDMT 64
VS+ + V L L+ F YL I HA A + L +
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTE------FEN-CYLEGNDI-------HALAAKLLQEND 113
Query: 65 K-----------YREAFSRRMAMAGLKPHHRIAL--GVSGGPDS-MALCVLTAGWKTGGF 110
Y A R MA AL V G +A+ GG
Sbjct: 114 TTLVKTKELIKNYITA--RIMAKRPFDKKSNSALFRAVGEGNAQLVAIF--------GG- 162
Query: 111 NQ-NGEA------------GEFIDGLLAITVDHGLREESKEEANIVSHRVSDMGIRCEIV 157
Q N + + L+ + + L E + + + I
Sbjct: 163 -QGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGLNIL---- 216
Query: 158 RCDWLDG---RPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD-------DQAEL 207
+WL+ P + +L IGV+ +AH+ EL
Sbjct: 217 --EWLENPSNTPDKDYLLSIPISCP-----------LIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 208 FILRLSRNSGVLG-----LAGMAFS-SQIFSSYAYSCHDDLKNHSILL---VR-----PL 253
S G G + +A + + + S+ S + +L VR P
Sbjct: 264 R----SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT---VLFFIGVRCYEAYPN 316
Query: 254 LDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRM-SLGDLSSCSFKSELQAVISACR 312
+ + P SP M S+ +L+ + ++Q ++
Sbjct: 317 TSLPPSILEDSLENNE----GVP---SP--------MLSISNLT----QEQVQDYVNKTN 357
Query: 313 RTRSYVEHVCSNLINEA----VTVMDQGYAVIDLEILN--------PS------------ 348
+ V +L+N A V+ G L LN PS
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVS----GPP-QSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 349 --KIEDIFL-------SKFLALVLQFICQR-------------QRPV------------R 374
K + FL S L I + Q PV
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 375 GSTSKLLLHYIRTFPC---KTSLTAAGCYLCPTPG-SRGTKALVCSSIDG 420
GS S+ ++ I P T+ A L PG + G L + DG
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Score = 39.3 bits (91), Expect = 0.005
Identities = 49/308 (15%), Positives = 82/308 (26%), Gaps = 122/308 (39%)
Query: 132 LREESK------EEANIVSHRVSDMGIR-CEIVRCD-----WLDGRPKQGHLQEAARDMR 179
L + SK A+ +H G +IV + G K ++E M
Sbjct: 1635 LYKTSKAAQDVWNRAD--NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 180 Y-----------RLFQ-------KVCIQHQIGVLLIAHHADDQAELF-----ILRLSRNS 216
+ ++F+ + + G+L Q L ++
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--QPALTLMEKAAFEDLKSK 1750
Query: 217 GV-----------LG----LAGMA--FSSQIFSSYAYSCHDDLKNHSILLVR-------- 251
G+ LG LA +A S L + +V
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMS---IE--------SL----VEVVFYRGMTMQV 1795
Query: 252 -PLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVI-S 309
D Y + +P R+ S LQ V+
Sbjct: 1796 AVPRDELGRSNYGMIAI-------NP---------GRVAASFSQ-------EALQYVVER 1832
Query: 310 ACRRTRSYVEHVCSNLINEAVTVMDQGYAV------IDL--EILNPSKIEDIFLSKFLAL 361
+RT VE V N+ N+ Q Y +D +LN K++ I + L
Sbjct: 1833 VGKRTGWLVEIVNYNVENQ------Q-YVAAGDLRALDTVTNVLNFIKLQKI---DIIEL 1882
Query: 362 VLQFICQR 369
+
Sbjct: 1883 QKSLSLEE 1890
Score = 38.9 bits (90), Expect = 0.006
Identities = 49/322 (15%), Positives = 88/322 (27%), Gaps = 107/322 (33%)
Query: 371 RPVRGSTSKLLLHY--IR-TFPCKTSLTAAGCYL-------CPTPGSRGTKALVCSSIDG 420
RP L L + + T+ L P P T+ + D
Sbjct: 7 RP-------LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP----TEGF---AADD 52
Query: 421 PLPSKLEL---FQIH-SDGEQRHCVTDVEQILEDAKSYSNHLIQDASD--KLLLSMISDS 474
+ EL F + S + V +Q+L + + + +D L ++ ++
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 475 VPTEAKRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPG 534
T K ++ ++ ++ +R K+ S+S L AV G
Sbjct: 113 DTTLVKTKELI-KNYITARIMAKRPFDKK--------SNSALFRAV-----------GEG 152
Query: 535 QVCYFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAELRHMI 594
+ F GG G ++Y ELR
Sbjct: 153 NA-----QLVAI-----------F-------GGQGNT--DDY----------FEELRD-- 175
Query: 595 ESDWLYLAKLSKGLSSGNLPLERVFIDEKTGQKVEKTNLCADYGRLSAKRAILSLKSIPV 654
LY + L I ++ R + + + + +
Sbjct: 176 ----LY--QTYH-------VLVGDLIKFSA-------ETLSELIRTTLDAEKVFTQGLNI 215
Query: 655 AARRSLPVLVSSHGQLLSIPVS 676
P LLSIP+S
Sbjct: 216 LEWLENPSNTPDKDYLLSIPIS 237
Score = 38.9 bits (90), Expect = 0.007
Identities = 41/278 (14%), Positives = 85/278 (30%), Gaps = 104/278 (37%)
Query: 441 VTDVEQILEDAKSYSNHL-------IQDASDKLLLSMISDSVPTEAKRFNMLSESTYKNI 493
+ D+ ++ + + + H I++ ++ I D K F ++E +
Sbjct: 1661 ILDI--VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 494 LLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNRFFVT----WKL 549
++ + T +Q P++ + ++
Sbjct: 1719 FRSEKGLLSA-------TQFTQ-----------PAL--------------TLMEKAAFED 1746
Query: 550 IKENGSRAFPREV----HNDGGLGEDSWNEYCSSCLVGD------EMVAEL---R----- 591
+K G P + H+ LGE Y + L E + E+ R
Sbjct: 1747 LKSKG--LIPADATFAGHS---LGE-----Y--AALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 592 HMIESDWL----Y-LAKLSKGLSSGNLPLERVF-----IDEKTGQKVEKTNL-------- 633
+ D L Y + ++ G + + E + + ++TG VE N
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 634 CADYGRLSAKRAI------LSLKSIPVAARRSLPVLVS 665
A G L A + + L+ I + L +S
Sbjct: 1855 AA--GDLRALDTVTNVLNFIKLQKIDIIE---LQKSLS 1887
Score = 33.1 bits (75), Expect = 0.42
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 26/98 (26%)
Query: 291 SLGD---LSSC----SFKSELQAVISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLE 343
SLG+ L+S S +S ++ V R + AV + G + +
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVV-----FYRG-------MTMQVAVPRDELGRSNYGMI 1810
Query: 344 ILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTSKLL 381
+NP ++ F + LQ++ +R V T L+
Sbjct: 1811 AINPGRVAASFSQE----ALQYVVER---VGKRTGWLV 1841
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 2e-08
Identities = 81/571 (14%), Positives = 159/571 (27%), Gaps = 179/571 (31%)
Query: 21 LVARLSLSSVKCRIP--------FTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREAFSR 72
L++ + + R P R + ++F K + V L K R+A
Sbjct: 94 LMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQALLE 146
Query: 73 RMAMAGLKPHHRIAL-GVSG-GPDSMALCVLTAG-----------WKTGGFNQNGEAGEF 119
L+P + + GV G G +AL V + W
Sbjct: 147 ------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETV 198
Query: 120 IDGL--LAITVDHGLREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARD 177
++ L L +D S +NI +R + + R
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNI-------------KLRIHSIQAELR--------RL 237
Query: 178 MRYRLFQKVCIQHQIGVLLIAHHADD-----QAELF-----ILRLSRNSGV--------- 218
++ + ++ LL+ + F IL +R V
Sbjct: 238 LKSKPYENC--------LLVL---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 219 ----LGLAGMAF----SSQIFSSYAYSCHDDLKNHSILLVRPLL-----DFSKDDMYKIC 265
L M + Y DL +L P + +D +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGL---- 341
Query: 266 QGGNR--DWVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCS 323
+W ++ + I SL L +E + + + S
Sbjct: 342 ---ATWDNWKHVNCDK----LTTIIESSLNVLEP----AEYR---------KMFDR--LS 379
Query: 324 NLINEAVTVMDQGYAVI--DLEILNPSKIEDIFLSKFLALVLQFICQRQRPVRGSTS--K 379
+ + + ++I D+ + + + L ++P + S
Sbjct: 380 -VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--------EKQPKESTISIPS 430
Query: 380 LLLHYIRTFPCKTSL--TAAGCYLCPTPGSRGTKALVCSSIDG-------------PLPS 424
+ L + +L + Y P + + L+ +D P
Sbjct: 431 IYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 425 KLELF------------QIHSDGEQRHCVTDVEQILEDAKSYSNHLI-QDASDKLLLSMI 471
++ LF +I D + + L+ K Y ++ D + L++ I
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 472 SDSVPTEAKRFNMLSESTYKNIL--LLQREE 500
D +P + L S Y ++L L E+
Sbjct: 549 LDFLPKIEEN---LICSKYTDLLRIALMAED 576
Score = 54.1 bits (129), Expect = 2e-07
Identities = 81/532 (15%), Positives = 146/532 (27%), Gaps = 174/532 (32%)
Query: 177 DMRYRLFQKVCIQHQIGVLLIAHHADDQAE-LF-ILRLSRNSGVLGLAGMAFSSQ---IF 231
DM + K I H ++++ A LF L + V +
Sbjct: 40 DMPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 232 SSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFV-R----N 286
S P + MY + +R + D + V R
Sbjct: 96 SPIKTEQRQ-----------PSMMT---RMYIEQR--DRLY-NDNQVFAKYNVSRLQPYL 138
Query: 287 RIRMSLGDLSSCSF----------KSELQAVISACRRTRSYVEHVCSNLI--------NE 328
++R +L +L K+ + + C + V+ I N
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYK--VQCKMDFKIFWLNLKNCNS 194
Query: 329 AVTVMDQG---YAVIDLEILN--------PSKIEDI--FLSKFLA--------LVLQFIC 367
TV++ ID + +I I L + L LVL
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---- 250
Query: 368 QRQRPVRGSTSKLLLHYIRTF--PCKTSLTAAGCYLCPTPGSRGTKALVCSSIDGPLPSK 425
V+ + + F CK LT +R + V + +
Sbjct: 251 ---LNVQNAKA------WNAFNLSCKILLT-----------TRFKQ--VTDFLSAATTTH 288
Query: 426 LELFQIHSDGEQRHCVTDVEQILEDAKSYSNHLIQD------ASDKLLLSMISDSVPTEA 479
+ L HS +V+ +L K Y + QD ++ LS+I++S+
Sbjct: 289 ISLDH-HSMTLTP---DEVKSLL--LK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 480 KRFNMLSESTYKNILLLQREEIKRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPG--QVC 537
++ +K++ + I L+ L+P +
Sbjct: 342 ATWD-----NWKHVNCDKLTTIIESSLNV----------------------LEPAEYRKM 374
Query: 538 YFMNRFFVTWKLIKENGSRAFPREVHNDGGLGEDSWNEYCSSCLVGDEMVAEL--RHMIE 595
+ V FP H L W + S + +V +L ++E
Sbjct: 375 FDR--LSV------------FPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYSLVE 418
Query: 596 SDW---------LYLAKLSKGLSSGNLPLERVFIDE-KTGQKVEKTNLCADY 637
+YL K L R +D + + +L Y
Sbjct: 419 KQPKESTISIPSIYLELKVK--LENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Score = 49.9 bits (118), Expect = 2e-06
Identities = 51/281 (18%), Positives = 87/281 (30%), Gaps = 85/281 (30%)
Query: 432 HSD---GEQRHCVTDVEQILEDA--KSYSNHLIQDASDKLLLSMISDSV---PTEAKRFN 483
H D GE ++ D+ + EDA ++ +QD +L D +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 484 MLSESTYKNILLLQREEI-KRFKLDSEVTSDSQLMHAVECVGTYPSIPLQPGQVCYFMNR 542
L LL ++EE+ ++F + + LM ++ PS+ + +R
Sbjct: 66 RLFW-----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR--MYIEQRDR 118
Query: 543 FF-VTWKLIKENGSRAFP----RE------------VHNDGGLGEDSW--NEYCSSCLVG 583
+ K N SR P R+ + G G+ +W + C S V
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQ 177
Query: 584 D---------------------EMVAELRHMIESDWLYLAKLSKGLSSGNLPLERVFIDE 622
EM+ +L + I+ +W S+ S N+ L I
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW-----TSRSDHSSNIKLRIHSIQA 232
Query: 623 KTGQKVEKTNLCADYGRLSAKRAILSLKSIPVAARRSLPVL 663
+ R +L K L VL
Sbjct: 233 E-------------------LRRLLKSKPYE----NCLLVL 250
Score = 34.8 bits (79), Expect = 0.10
Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 72/275 (26%)
Query: 10 QSRTTSTLLSTLVARLSLSSVKCRIPFTRSQYLPSIRLFCKCSHAHAVEYLTDMTKYREA 69
+ TT+ +++A + + + + S + L + +YR+
Sbjct: 321 EVLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESS----LNVL-EPAEYRKM 374
Query: 70 FSRRMAMAGLKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGE-AGEFIDGLLA--- 125
F R+++ P I + L ++ W + + L
Sbjct: 375 F-DRLSV--FPPSAHIPTIL--------LSLI---WFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 126 -----ITVDHGL----REESKEEANIVSHRVSDMGIRC-EIVRC-DWLDGRPKQG----- 169
I++ + + + + E + HR + I + D D P
Sbjct: 421 PKESTISI-PSIYLELKVKLENEYAL--HR---SIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 170 -----HLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADDQAELFILRLSRNSGVLGLAGM 224
HL+ R LF+ V L D + F+ + R+ A
Sbjct: 475 SHIGHHLKNIEHPERMTLFRM--------VFL-----DFR---FLEQKIRHDSTAWNASG 518
Query: 225 AFSS--QIFSSY-AYSCHDDLKNHSILLVRPLLDF 256
+ + Q Y Y C +D K LV +LDF
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYER--LVNAILDF 551
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.50
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 16/39 (41%)
Query: 497 QREEIKRFKLDSEV---TSDSQLMHAVECVGTYPSIPLQ 532
+++ +K KL + + DS A P++ ++
Sbjct: 18 EKQALK--KLQASLKLYADDS----A-------PALAIK 43
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 30.6 bits (70), Expect = 1.4
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 29/75 (38%)
Query: 110 FNQNGEAGEFI----DGL----LAITVD-HGLREESKEEANIVSHRVSDMGIRCEIVR-C 159
++ +FI DGL LA+ VD H G+ EIVR
Sbjct: 152 ADEKLAREDFIIHRRDGLFAYNLAVVVDDH------------------FQGV-TEIVRGA 192
Query: 160 DWLDGRPKQGHLQEA 174
D ++ +Q L +
Sbjct: 193 DLIEPTVRQISLYQL 207
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP
binding, transferase; HET: UTP; 2.28A
{Schizosaccharomyces pombe}
Length = 340
Score = 29.3 bits (65), Expect = 4.0
Identities = 9/96 (9%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 236 YSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVE-DPTNRSPLFVRNRIRMSLGD 294
Y+ + + + RP +K + + + +R L + + +S +
Sbjct: 242 YAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISH-N 300
Query: 295 LSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAV 330
+ S L + + + +++
Sbjct: 301 VGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSL 336
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 29.1 bits (66), Expect = 4.9
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 20/57 (35%)
Query: 523 VGTYPSIPLQPGQV------CYFMNRFF-------VTWKLIKENG----SRAFPREV 562
VGTY L+ G V Y + L+ ++G S+ REV
Sbjct: 352 VGTYKDRVLEEGMVITIEPGLYIEEESIGIRIEDDI---LVTKDGHENLSKDIIREV 405
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 27.7 bits (62), Expect = 7.0
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 18/66 (27%)
Query: 115 EAGEFIDGLLAITVDHGLREESKEEANI----------VSHRVSDMGIRCEIVRCDWLDG 164
E ++ G+ E EE I V+ +++ + + ++
Sbjct: 46 NPDE--------SLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVIAIVFDGGYVVA 97
Query: 165 RPKQGH 170
K +
Sbjct: 98 DVKLSY 103
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot,
ATP-binding, ligase, nucleoti binding, tRNA processing;
2.20A {Geobacillus kaustophilus}
Length = 142
Score = 27.5 bits (61), Expect = 7.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 652 IPVAARRSLPVLVSSHGQLLSIP 674
IP R P++ + G++L +P
Sbjct: 85 IPRMERDRWPIVEDADGRILWVP 107
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 28.8 bits (65), Expect = 7.6
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 87 LGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-REESKEEANIVSH 145
+ +SGG DS L + Q ++A+ +D+G R K E+ V
Sbjct: 245 VLLSGGVDSTVCTALLN--RALNQEQ----------VIAVHIDNGFMR---KRESQSVEE 289
Query: 146 RVSDMGIRCEIV 157
+ +GI+ +++
Sbjct: 290 ALKKLGIQVKVI 301
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 28.6 bits (65), Expect = 8.0
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGL-REESKEEANI 142
R+ L VSGG DS L +L A +A LA+ VDHGL R E
Sbjct: 211 RVLLAVSGGVDSSTLALLLA-----------KA---GVDHLAVFVDHGLLR---LGEREE 253
Query: 143 VSHRVSDMGIRCEIVRCD 160
V + +G+ ++ D
Sbjct: 254 VEGALRALGVN--LLVVD 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.403
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,199,657
Number of extensions: 616881
Number of successful extensions: 1174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 29
Length of query: 676
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 576
Effective length of database: 3,909,693
Effective search space: 2251983168
Effective search space used: 2251983168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.8 bits)