RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005804
(676 letters)
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 83.9 bits (206), Expect = 5e-19
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 28/215 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
R+ + SGG DS+ L + K + + +H LRE ++
Sbjct: 21 FSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKE---------VALAHFNHMLRESAER 71
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLD-GRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLI 197
+ + ++ + + D + + L+EA R +RY+ +++ +
Sbjct: 72 DEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIAT 131
Query: 198 AHHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFS 257
AHH +D E +L +R +G+ GL G ++ RPL
Sbjct: 132 AHHLNDLLETSLLFFTRGTGLDGLIGF------------------LPKEEVIRRPLYYVK 173
Query: 258 KDDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
+ ++ + + WVED TN RNRIR +
Sbjct: 174 RSEIEEYAKFKGLRWVEDETNYEVSIPRNRIRHRV 208
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 75.5 bits (184), Expect = 5e-16
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 28/214 (13%)
Query: 79 LKPHHRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKE 138
L +I + SGG DS L W+T L AI V HGL +
Sbjct: 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVA---------LRAIHVHHGLSANADA 60
Query: 139 EANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIA 198
+ + + R Q L A+ + R VL+ A
Sbjct: 61 WVTHCENVCQQWQVPLVVERVQL-----AQEGLGIEAQARQARYQAFARTLLPGEVLVTA 115
Query: 199 HHADDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSK 258
H DDQ E F+ +A + + + + L+RPLL ++
Sbjct: 116 QHLDDQCETFL--------------LALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTR 161
Query: 259 DDMYKICQGGNRDWVEDPTNRSPLFVRNRIRMSL 292
++ + + + W+ED +N+ + RN +R+ +
Sbjct: 162 GELVQWARQYDLRWIEDESNQDDSYDRNFLRLRV 195
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 47.4 bits (111), Expect = 7e-07
Identities = 17/191 (8%), Positives = 42/191 (21%), Gaps = 37/191 (19%)
Query: 83 HRIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANI 142
++ L SGG D+ + + I A + G +++
Sbjct: 2 EKVVLAYSGGLDTSVILKWLCEKG----------FDVI----AYVANVGQKDDFVAIKEK 47
Query: 143 VSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHAD 202
+ L A L + I +
Sbjct: 48 --ALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEK 105
Query: 203 DQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDF------ 256
+ A+ + + +++ N ++ ++ P D
Sbjct: 106 EGAQYVAHGATGKGNDQVRFELTYAA--------------LNPNLKVISPWKDPEFLAKF 151
Query: 257 -SKDDMYKICQ 266
+ D+
Sbjct: 152 KGRTDLINYAM 162
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 45.5 bits (106), Expect = 3e-06
Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 30/185 (16%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+I L SGG D+ + +T ++A T D G EE +E
Sbjct: 2 KIVLAYSGGLDTSIILKWLK--ETYRAE-----------VIAFTADIGQGEEVEEAREKA 48
Query: 144 SHRVSDMGI--RCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
+ I + + + + I + + A
Sbjct: 49 LRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGA 108
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
+ A + + F AY+ D+K I R + +M
Sbjct: 109 EAIAHGATGKGNDQVR-------------FELTAYALKPDIKV--IAPWREWSFQGRKEM 153
Query: 262 YKICQ 266
+
Sbjct: 154 IAYAE 158
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 45.7 bits (107), Expect = 5e-06
Identities = 27/206 (13%), Positives = 55/206 (26%), Gaps = 32/206 (15%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ + +SGG DS LT + G + A+ S+ V
Sbjct: 6 KVMVLLSGGIDSPVAAYLTM-----------KRG---VSVEAVHFHSPPF-TSERAKQKV 50
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
++ C+ V + Q + + + + + +A
Sbjct: 51 IDLAQELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALA 110
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
L Q+ S S H + + ++RPL+ K ++ K
Sbjct: 111 ITTGESLG-----------------QVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIK 153
Query: 264 ICQGGNRDWVEDPTNRSPLFVRNRIR 289
I + + V
Sbjct: 154 IAEEIGTYDISIRPYEDCCTVFTPAS 179
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 34.3 bits (77), Expect = 0.029
Identities = 27/182 (14%), Positives = 43/182 (23%), Gaps = 22/182 (12%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
++ LG+SGG DS +L + G N L E ++
Sbjct: 22 KVILGLSGGVDSSVTAML--LHRAIGKN------------LTCVFVDNGLLRLNEAEQVL 67
Query: 144 SHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHADD 203
G+ V + G A+ + L
Sbjct: 68 DMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ 127
Query: 204 QAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYK 263
A ++K LV PL + KD++ K
Sbjct: 128 GTIYPD-----VIESAASATGKAHVIKSHHNVGGLPKEMKMG---LVEPLKELFKDEVRK 179
Query: 264 IC 265
I
Sbjct: 180 IG 181
>d2essa1 d.38.1.8 (A:1-149) Acyl-ACP thioesterase {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 149
Score = 30.5 bits (68), Expect = 0.36
Identities = 13/102 (12%), Positives = 36/102 (35%), Gaps = 4/102 (3%)
Query: 272 WVEDPTNRSPLFVRNRIRMSLGDLSSCSFKSELQAVISACRRTRSYVEHVCSNLINEAVT 331
+ + +V +R+ + L ++ K +Q + R + + + +
Sbjct: 48 GIATLNEDNYTWVLSRLAIELDEMPYQYEKFSVQTWVENVYRLFTDRNFAVIDKDGKKIG 107
Query: 332 VMDQGYAVIDLEILNPSKIEDIFLSKFLALVLQFICQRQRPV 373
+A+I+L P+ + + + +IC P+
Sbjct: 108 YARSVWAMINLNTRKPADLLALHGGSIVD----YICDEPCPI 145
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 30.4 bits (67), Expect = 0.50
Identities = 22/182 (12%), Positives = 47/182 (25%), Gaps = 16/182 (8%)
Query: 84 RIALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIV 143
+ S G DS + L G + VD + +E
Sbjct: 28 NPVMLYSIGKDSAVMLHLARKAFFPGKLP----------FPVMHVDTR--WKFQEMYRFR 75
Query: 144 SHRVSDMGIRCEIVRCD--WLDGRPKQGHLQEAARDMRYRLFQKVCIQHQIGVLLIAHHA 201
V +MG+ G H D+ K +
Sbjct: 76 DQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGAR 135
Query: 202 DDQAELFILRLSRNSGVLGLAGMAFSSQIFSSYAYSCHDDLKNHSILLVRPLLDFSKDDM 261
D+ + + + + Y+ + + + V PL ++++ D+
Sbjct: 136 RDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGES--IRVFPLSNWTELDI 193
Query: 262 YK 263
++
Sbjct: 194 WQ 195
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 27.2 bits (60), Expect = 0.94
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 566 GGLGEDSWNEYCSSCLVGDEMVA 588
G LG D E+C C G E++
Sbjct: 1 GPLGSDHHMEFCRVCKDGGELLC 23
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 29.2 bits (64), Expect = 1.0
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 7/97 (7%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
+ LGV G +AL + G+K FN+ E A G + +
Sbjct: 7 VGLGVMGAN--LALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA- 63
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYR 181
+ G +++ +
Sbjct: 64 ----ASLKKPRKALILVQAGAATDSTIEQLKKVFEKG 96
>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain
{Bacillus sp. [TaxId: 1409]}
Length = 357
Score = 29.5 bits (65), Expect = 1.4
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 233 SYAYSCHDDLKNHSILLVRPLLDFSKDDMYKICQGGNRDWVEDPTNRSPLFVRNRIR 289
S+A + KN P + + D + G N+ W + + S +VR RI+
Sbjct: 293 SWANWSLTN-KNEISGAFTPF-ELGRTDATDLDPGANQVWAPEELSLSGEYVRARIK 347
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
(Ovis orientalis aries) [TaxId: 9940]}
Length = 176
Score = 27.3 bits (59), Expect = 4.3
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 13/106 (12%)
Query: 85 IALGVSGGPDSMALCVLTAGWKTGGFNQNGEAGEFIDGLLAITVDHGLREESKEEANIVS 144
I L V G + L + G+ FN+ VD L E+K + +
Sbjct: 8 IGLAVMGQN--LILNMNDHGFVVCAFNRTVSK-----------VDDFLANEAKGTKVLGA 54
Query: 145 HRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQH 190
H + +M + + R L + Q + + + I
Sbjct: 55 HSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDG 100
>d1s5ua_ d.38.1.1 (A:) Hypothetical protein YbgC {Escherichia coli
[TaxId: 562]}
Length = 129
Score = 26.6 bits (58), Expect = 5.7
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 308 ISACRRTRSYVEHVCSNLINEAVTVMDQGYAVIDLEILNPSKIEDIFLSKF 358
I++ R T N N + + +D + P + +++F
Sbjct: 79 ITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEF 129
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase
alpha subunit {Bacillus subtilis [TaxId: 1423]}
Length = 67
Score = 25.3 bits (56), Expect = 6.4
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 231 FSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
S +Y+C LK I V+ L + +++DM K+
Sbjct: 14 LSVRSYNC---LKRAGINTVQELANKTEEDMMKV 44
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 24.8 bits (54), Expect = 7.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 123 LLAITVDHGLREESKEEANIVSH 145
+L I HG+ E + + VSH
Sbjct: 12 ILEIGKKHGITELHPDVVSYVSH 34
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 26.9 bits (58), Expect = 7.4
Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 6/133 (4%)
Query: 76 MAGLKPHHRIALGVSGGPDSMALCVL--TAGWKTGGFNQN--GEAGEFIDGLLAITVDHG 131
+ L RI + SGG D+ A + G + N E D + +++G
Sbjct: 4 LKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYG 63
Query: 132 LREESKEEANIVSHRVSDMGIRCEIVRCDWLDGRPKQGHLQEAARDMRYRLFQKVCIQHQ 191
+ I+C R + + +
Sbjct: 64 AENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPL--GRAVTGTMLVAAMKEDG 121
Query: 192 IGVLLIAHHADDQ 204
+ +
Sbjct: 122 VNIWGDGSTYKGN 134
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 26.5 bits (57), Expect = 8.9
Identities = 3/20 (15%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 141 NIVSHRVSDMGIRCEIVRCD 160
I + +G+ +I+
Sbjct: 15 RIW-RTLRYLGVETKIIPNT 33
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha
subunit {Escherichia coli [TaxId: 562]}
Length = 72
Score = 25.0 bits (55), Expect = 9.3
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 231 FSSYAYSCHDDLKNHSILLVRPLLDFSKDDMYKI 264
+ + +C LK +I + L+ ++ ++ K
Sbjct: 13 LTVRSANC---LKAEAIHYIGDLVQRTEVELLKT 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.403
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,450,831
Number of extensions: 114738
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 21
Length of query: 676
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 585
Effective length of database: 1,158,166
Effective search space: 677527110
Effective search space used: 677527110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)