Query 005805
Match_columns 676
No_of_seqs 169 out of 233
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 13:59:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04113 Gpi16: Gpi16 subunit, 100.0 1E-158 2E-163 1332.6 54.3 519 38-636 17-563 (564)
2 KOG2407 GPI transamidase compl 100.0 1E-156 3E-161 1252.4 36.0 545 38-662 23-574 (575)
3 PF08487 VIT: Vault protein in 69.3 26 0.00057 32.3 8.2 83 407-506 20-117 (118)
4 PF13598 DUF4139: Domain of un 64.4 78 0.0017 33.8 11.8 72 405-506 241-312 (317)
5 TIGR02231 conserved hypothetic 59.2 82 0.0018 36.5 11.6 77 407-518 443-521 (525)
6 PF13314 DUF4083: Domain of un 55.9 28 0.00061 28.8 5.0 32 580-611 1-34 (58)
7 PF12955 DUF3844: Domain of un 35.0 46 0.00099 30.7 3.6 35 576-611 62-96 (103)
8 PF11446 DUF2897: Protein of u 31.1 46 0.00099 27.3 2.6 21 580-600 1-21 (55)
9 TIGR03050 PS_I_psaK_plant phot 30.4 37 0.00079 30.1 2.1 18 581-598 5-22 (83)
10 PF04502 DUF572: Family of unk 26.5 22 0.00047 38.9 0.0 30 578-608 35-64 (324)
11 PF06249 EutQ: Ethanolamine ut 24.7 5.8E+02 0.013 25.2 9.4 28 489-518 122-149 (152)
No 1
>PF04113 Gpi16: Gpi16 subunit, GPI transamidase component; InterPro: IPR007245 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins. Gpi16 is an essential N-glycosylated transmembrane glycoprotein. Gpi16 is largely found on the lumenal side of the ER. It has a single C-terminal transmembrane domain and a small C-terminal, cytosolic extension with an ER retrieval motif [].; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=100.00 E-value=1.1e-158 Score=1332.57 Aligned_cols=519 Identities=45% Similarity=0.821 Sum_probs=456.9
Q ss_pred CCCCceeeeEEeeeCCCCcEEEEEEEEEc-cCCCCCCCcccccccHHHHHHhHhcCeeEEEEEeeeeeccCcccCCCCCC
Q 005805 38 GGGEEFSEELLLKPFPDRKVLAHFHFQSR-APHSSSHGRHHHLFPKAIAQLVKKFRVKEMELSFTQGRWRYEQWGGFDPL 116 (676)
Q Consensus 38 ~~~e~f~E~L~L~PLp~~~lla~F~F~~~-~~~~~~~~~h~~lFPrsl~qil~~~~v~ELhLsfTqGrW~~~~WG~p~p~ 116 (676)
..+|.|+|+|+|||||+|+++++|+|+++ ...+.+..+||++|||+|+||+++++++||||||||||||+++||. +|+
T Consensus 17 ~~~~~f~E~L~l~PL~~~~ll~~F~F~~~~~~~~~~~~~h~~~fP~~i~~il~~~~~~elhl~fTqG~W~~~~WG~-~p~ 95 (564)
T PF04113_consen 17 SASESFTEELTLKPLPDGKLLASFNFTTESSSSNNDEYQHYTLFPRSIGQILQKYNVRELHLSFTQGRWDYESWGY-PPF 95 (564)
T ss_pred cccCceeeEEEEEECCCCCEEEEEEEEeccCccccccccccccCCHHHHHHHHhcCceEEEEEEeeccCcccccCC-CCc
Confidence 45889999999999999999999999994 3345678899999999999999999999999999999999999998 889
Q ss_pred CCCCCCCCceEEEEEEeCCc-hhHHHHHHHHHHHhhhhhhhccccccCCceeecCcccccCCC-----ceeEeecCCCCc
Q 005805 117 SSNNAKPPGVELWAVFDVPQ-SLVDVYWRNLTHTLSGLFCASINFLESSTTYSAPELTFKPSF-----GNLRYGTLPREA 190 (676)
Q Consensus 117 ~~~~~~~~GvELwA~~~~~~-~~~d~~W~~LtnaLSGLFCASLNfidst~t~~~P~~sf~p~~-----~~l~~a~LP~E~ 190 (676)
+|.+++|+||||||||+++. +++|++|++|||+|||||||||||||+++|++ |.++|+|.+ .+++||+||+|+
T Consensus 96 ~g~~~~~~G~elwA~~~~~~~~~~d~~W~~Lt~~LsGlfCASLn~id~~~t~~-P~~~~~~~~~~~~~~~~~~~~LP~E~ 174 (564)
T PF04113_consen 96 DGFKSGPTGAELWAWFEAPSDEEADERWKGLTNALSGLFCASLNFIDSTNTTS-PVFSFQPEGNGNNSLFLRYASLPREP 174 (564)
T ss_pred cccccCCcceEEEEEecCCcchHHHHHHHHHHHHHHHHhhhcccccCCCcEEC-cceeeccCCCCCCcceEEeeeCCCCC
Confidence 99999999999999999974 55999999999999999999999999999887 999999987 489999999999
Q ss_pred ccccCcchhhhccCCCCCcccccccCCCccccccceeeeEEEEeccCCCCCCcceEEEEEEEEEEEcCCCccCCc-----
Q 005805 191 VCTENLTPWLKLLPCRDKAGLSALMDRPSIYRGFYHSQRLRLTSSESGSDEVDSGIGLDQTLTVVLQPSSWRTGK----- 265 (676)
Q Consensus 191 VCTENLTP~lKLLPCk~kaGLasLLd~~~lf~s~yhS~~i~v~~~c~~~~~~~~~l~l~qtv~~Vld~~~~~~~~----- 265 (676)
|||||||||+||||||+|+||++|||||++||+.||||+|||++.|++..|. |+++|+|++++|+|+.++++++
T Consensus 175 vCTENLTP~~KLLPc~~~~GLasLL~~~~lf~s~yhS~~i~v~~~c~~~~~~-~~~~l~~~~~~V~d~~~~~~~~p~~~~ 253 (564)
T PF04113_consen 175 VCTENLTPWLKLLPCKGKAGLASLLDPHKLFDSNYHSLSIDVRTICDDSTCS-CSLELEQTLTVVLDPPRSLRRRPVPGD 253 (564)
T ss_pred cccccchhhHHhCCCCccCCHHHHcCchhhhcCCceeEEEEEEecCCCCCCc-eEEEEEeEEEEEECchhhcCCCCCccc
Confidence 9999999999999999999999999999999999999999999999988777 9999999999999999887655
Q ss_pred --------------ccCCCCCCCCCeeeecccCCCCCCCCCCcc-CceEEEEcCCCccccccchhccccccccccccccc
Q 005805 266 --------------TYSVETNIQPSWSISSIFGRNIPGKCVIAK-SSNVYLQLDNGLVGELKNLERENAKYVANTFESEG 330 (676)
Q Consensus 266 --------------~~~~~~~~~~~wSL~~lFgr~i~g~CplA~-sS~V~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 330 (676)
.++.++..+.+|||++||||+++|+||+|+ +|+|||+++.+.
T Consensus 254 ~l~cd~~k~~~~~~c~pl~~~~~~dWSl~~lFGr~i~g~CplA~~sS~V~v~v~~~~----------------------- 310 (564)
T PF04113_consen 254 ELRCDTSKPYDAWQCFPLGDSSEQDWSLSSLFGRKIPGSCPLADESSKVYVDVPEEW----------------------- 310 (564)
T ss_pred ccccccCCCcccceeeecCCCCCCCeeHHHHhCCCCCCCCccCCCCceEEEecCCce-----------------------
Confidence 123345667899999999999999999999 999999987532
Q ss_pred cccCcceeeecCCCcceeeeccccCCCCceEEeeeecCCCCCCcceeeeeccc-ccccccCCCceEEEEEeecccccccc
Q 005805 331 FQSNHAFKISVTPDKVFEEVDNLHGKSTSVIYGFSVEKYSDSQPFDLGLTWKI-PVVWSCQQAPLHASRFLMGSGNERGA 409 (676)
Q Consensus 331 ~~~~~~f~~~~~p~~v~~e~~~~~~~~~~~~~~ydl~~~s~~~~~dl~~~~~~-p~~~~~~~ppl~a~R~ltG~GqerGg 409 (676)
++...+.. .+. .......++|++.+. .++||.++|+. +..+..++|||||+|+++||||+|||
T Consensus 311 -------~v~~~~~~--~~~----~~~~~~~~~y~l~~~---~~~dl~l~~~~~~~~~~~~~ppL~a~R~LtG~GQerGg 374 (564)
T PF04113_consen 311 -------SVSPEPGA--DEQ----KTSSDNLNCYDLSES---SPFDLYLPWKNSSIVWSLPPPPLYASRSLTGYGQERGG 374 (564)
T ss_pred -------EEeccCCc--eEE----eccCCcEEEEEcCCC---CCCCeEeeccCCCccccCCCCceEEEEEEcCCCcCCCe
Confidence 12222111 111 123456789999864 58999999975 33456689999999999999999999
Q ss_pred EEEEEecCCCCCCCCCccccCCCceeEEEEEEeecceeeEeeeEEEEEEcCCcccccccceeEEecCCCCCCCCceEEEE
Q 005805 410 IAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVVDKIRVSPSKDKVSPGVMEMI 489 (676)
Q Consensus 410 l~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWf~r~ylHTL~v~~~g~~~~~~~~i~~~~y~Pa~dR~rP~~LEl~ 489 (676)
|+++|+|++ +.+++|+|||+||||||||+|||++++++......++|+.++|+||+||+||++||+.
T Consensus 375 l~~~i~N~~-------------~~~v~i~y~E~lPWf~r~YlhTL~v~~~~~~~~~~~~i~~~~y~Pa~dr~rp~~lE~~ 441 (564)
T PF04113_consen 375 LRTVITNPS-------------DTPVEIVYFESLPWFMRPYLHTLKVEVDGQPKPESDVIKSIYYSPAKDRKRPTHLELV 441 (564)
T ss_pred EEEEEECCC-------------CCceEEEEEEeccceeeeeEEEEEEEEecCccccccceeeEeeccccccCCCceEEEE
Confidence 999999997 5699999999999999999999999999777777889999999999999999999999
Q ss_pred EEecCCCeEEEEEEeecccceecccCCCCCCCCcccCcceeeeccccccccCcccccccCCcccccCCCCCCeEEecccc
Q 005805 490 LKLPCGSKSAAFSLEFDKGFLHIDEYPPDANQGFDIPSALISFPSFNARMNFSEDEFLNNSPILSKFQETSPVLSYTEVL 569 (676)
Q Consensus 490 l~lP~~~St~~ls~~FdK~fL~~~EYPPDANrGFdIpsAvIt~~~~~~~~~~~~~~~~~~spl~~~~~~~~~~~iyT~~L 569 (676)
++|||+ |+++|+|||||+||||+|||||||||||||||||++++.. +...+++||++|
T Consensus 442 l~lP~~-st~~~s~~f~K~~L~~~EyPpDAnrGfdi~~avi~~~~~~---------------------~~~~~~~~T~~l 499 (564)
T PF04113_consen 442 LTLPPN-STVTLSIDFDKAFLRYTEYPPDANRGFDIPSAVITVLDPN---------------------SSSPYRIYTESL 499 (564)
T ss_pred EEECCC-ceEEEEEEEEeeeechhhCCCCcccCcccCceEEEeecCC---------------------CCccEEEecccc
Confidence 999998 9999999999999999999999999999999999986421 234689999999
Q ss_pred cccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhcCcchhhHHHHHHHHHHHH
Q 005805 570 LIPLTTPDFSMPYNVITITCTVFALYFGSLLNVLRRRVDEEERILRSRAGHKAGWISQLLSRLSAKL 636 (676)
Q Consensus 570 Ll~LPTPDFSMPYNVI~lTsTViAL~FGsi~NlltRr~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (676)
||+||||||||||||||||||||||+||+|||+||||+..+|...+..+.++ +++++++|++|+
T Consensus 500 Lv~LptPDFSMPyNVI~lt~Tv~Al~FG~i~nlltrr~~~~~~~~~~~~~~~---~~kL~~~i~~~~ 563 (564)
T PF04113_consen 500 LVSLPTPDFSMPYNVIILTCTVMALAFGSIFNLLTRRFVTEEEAEKSKAQSK---LRKLKRKIKKKI 563 (564)
T ss_pred cccCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhH---HHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999766555443332212 245665555554
No 2
>KOG2407 consensus GPI transamidase complex, GPI16/PIG-T component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-156 Score=1252.43 Aligned_cols=545 Identities=41% Similarity=0.707 Sum_probs=473.2
Q ss_pred CCCCceeeeEEeeeCCCCcEEEEEEEEEccCCC-CCCCcccccccHHHHHHhHhcCeeEEEEEeeeeeccCcccCCCCCC
Q 005805 38 GGGEEFSEELLLKPFPDRKVLAHFHFQSRAPHS-SSHGRHHHLFPKAIAQLVKKFRVKEMELSFTQGRWRYEQWGGFDPL 116 (676)
Q Consensus 38 ~~~e~f~E~L~L~PLp~~~lla~F~F~~~~~~~-~~~~~h~~lFPrsl~qil~~~~v~ELhLsfTqGrW~~~~WG~p~p~ 116 (676)
...|.|+|+|.|||||+|+|+++|+|++.++++ .+..+||.+|||+|+|+|+++.||||||+||||||||+.||- .|.
T Consensus 23 ~~~e~fdE~LvlkPlps~dv~~~F~F~~r~~~~~~~~~~hy~lFPraI~~Ll~~~~vrelhl~fTqGrW~~e~WG~-~p~ 101 (575)
T KOG2407|consen 23 TLSENFDEALVLKPLPSNDVLVSFAFETRAEPNRKDESSHYLLFPRAIAELLSKYSVRELHLRFTQGRWNYEGWGL-PPF 101 (575)
T ss_pred CcccccCcceeeecCCCCceEEEEEEeecCCccccccccceeechHHHHHHHHHhhhheeEeeeecceecccccCC-CCc
Confidence 457889999999999999999999999999885 688999999999999999999999999999999999999995 333
Q ss_pred CCCCCCCCceEEEEEEeCC-chhHHHHHHHHHHHhhhhhhhccccccCCceeecCcccccCCC----ceeEeecCCCCcc
Q 005805 117 SSNNAKPPGVELWAVFDVP-QSLVDVYWRNLTHTLSGLFCASINFLESSTTYSAPELTFKPSF----GNLRYGTLPREAV 191 (676)
Q Consensus 117 ~~~~~~~~GvELwA~~~~~-~~~~d~~W~~LtnaLSGLFCASLNfidst~t~~~P~~sf~p~~----~~l~~a~LP~E~V 191 (676)
.++|+||||||||+++ .+++|++||.|+|+|||||||||||||+++|+. |..+++|.+ .++|||+||+|.|
T Consensus 102 ---~s~psGaElWa~f~~~~~~~vd~~WK~Ltn~LSGllCaSLNfIdssns~~-p~~s~~~~g~~s~~~lryasLPrE~v 177 (575)
T KOG2407|consen 102 ---PSGPSGAELWAWFQADQQEDVDKSWKKLTNALSGLLCASLNFIDSSNSYA-PRVSYNGHGLFSSTFLRYASLPRETV 177 (575)
T ss_pred ---cCCCcceEEEEEecCcchhhHHHHHHHHHHHhhhheecceeeecccCccc-cccccCCCCCCCcceEEEeecCCCcc
Confidence 5999999999999997 677999999999999999999999999999997 998887643 3899999999999
Q ss_pred cccCcchhhhccCCCCCcccccccCCCccccccceeeeEEEEeccCCCCCCcceEEEEEEEEEEEcCCCccCCcccCCCC
Q 005805 192 CTENLTPWLKLLPCRDKAGLSALMDRPSIYRGFYHSQRLRLTSSESGSDEVDSGIGLDQTLTVVLQPSSWRTGKTYSVET 271 (676)
Q Consensus 192 CTENLTP~lKLLPCk~kaGLasLLd~~~lf~s~yhS~~i~v~~~c~~~~~~~~~l~l~qtv~~Vld~~~~~~~~~~~~~~ 271 (676)
||||||||+||||||+|+||++|||+|++||+.|||+++||++.|++.++..|+++|+|+++||+|+... +
T Consensus 178 CTENLTPw~KLLPC~~k~GissLL~~~~lf~t~yHS~~l~v~~~c~~~e~~~c~~em~qti~vV~d~~~~---------~ 248 (575)
T KOG2407|consen 178 CTENLTPWKKLLPCKSKSGISSLLDSHKLFNTVYHSQSLDVRTVCSENEKDLCSVEMEQTISVVMDVSQT---------G 248 (575)
T ss_pred cccccchHHHhcCCCcccchHhhcCcccccccccccceeEEEeeccccccccceeEEeeeEEEEEehhHh---------c
Confidence 9999999999999999999999999999999999999999999999888999999999999999999532 2
Q ss_pred CCCCCeeeecccCCCCCCCCCCccCceEEEEcCCCccccccchhccccccccccccccccccCcceeeecCCCcceeeec
Q 005805 272 NIQPSWSISSIFGRNIPGKCVIAKSSNVYLQLDNGLVGELKNLERENAKYVANTFESEGFQSNHAFKISVTPDKVFEEVD 351 (676)
Q Consensus 272 ~~~~~wSL~~lFgr~i~g~CplA~sS~V~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~~v~~e~~ 351 (676)
..+++|||..+|||++.+.||+|++|+||++.+..-+.. ....|-...+...--.+.+.
T Consensus 249 ~~~~~wSL~~~f~r~l~~yC~la~sS~ihv~~s~~~e~~-----------------~~~~~~~~~~~~~~~~~~~~---- 307 (575)
T KOG2407|consen 249 QRKPDWSLRRLFGRPLGSYCPLAESSKIHVQLSQLSERT-----------------TGVPDLFTTVPTKRLGTSVT---- 307 (575)
T ss_pred ccCCCchHHHHhCCCCCCcccCCCcceeEEEeeccccee-----------------ccCCCcccccceeecceeee----
Confidence 335789999999999999999999999999987432111 00011111222211111111
Q ss_pred cccCCCCceEEeeeecCCCCCCcceeeeecccccccccCCCceEEEEEeeccccccccEEEEEecCCCCCCCCCccccCC
Q 005805 352 NLHGKSTSVIYGFSVEKYSDSQPFDLGLTWKIPVVWSCQQAPLHASRFLMGSGNERGAIAISLEPTESSEGLPTSHIIDG 431 (676)
Q Consensus 352 ~~~~~~~~~~~~ydl~~~s~~~~~dl~~~~~~p~~~~~~~ppl~a~R~ltG~GqerGgl~~~i~N~~~~~~~~~~~~~~~ 431 (676)
....+...|+...+.++.||+++.|+.|. ....+||||+|+|+|+||+||+|++.|+|++
T Consensus 308 -----~~~f~~~~di~~~s~~~~fn~~l~w~~ps--~n~~~plhv~R~l~G~Gq~rG~l~~~i~N~~------------- 367 (575)
T KOG2407|consen 308 -----YEPFLDYDDIDKISMDESFNLQLAWKSPS--DNHAVPLHVSRSLSGFGQERGVLSILITNDE------------- 367 (575)
T ss_pred -----eehhhhcchhhhhccccccccccceecCC--ccccCceeeeeeccCCccccceEEEEEecCC-------------
Confidence 11134455666677889999999999987 3467889999999999999999999999987
Q ss_pred CceeEEEEEEeecceeeEeeeEEEEEEcCCcccccccceeEEecCCCCCCCCceEEEEEEecCCCeEEEEEEeeccccee
Q 005805 432 RCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVVDKIRVSPSKDKVSPGVMEMILKLPCGSKSAAFSLEFDKGFLH 511 (676)
Q Consensus 432 ~~~v~v~y~E~lPWf~r~ylHTL~v~~~g~~~~~~~~i~~~~y~Pa~dR~rP~~LEl~l~lP~~~St~~ls~~FdK~fL~ 511 (676)
+++++++|||++|||||+|+|||+|+++++..+-.+.|+++||.|++||++|++||+.|.|||+ +++.|+|+|||++||
T Consensus 368 ~~a~~i~~fe~iPWyvrvYlhtL~It~~~~~~~~~~~i~ki~y~p~~dr~~p~~lE~~~~lPa~-t~~~vsi~fdk~lL~ 446 (575)
T KOG2407|consen 368 YSASKIHYFEIIPWYVRVYLHTLQITSDGQRKNGVDRIEKIYYQPSKDREAPTLLEIKMKLPAN-TSCEVSIQFDKALLR 446 (575)
T ss_pred CCceeeEEEEecceEEEEEEEEEEEEEcCccCCCcchhHhhhcCchhhccCCceeEEEEEcCCC-ceEEEEEEchhhhhh
Confidence 6899999999999999999999999999888767789999999999999999999999999999 999999999999999
Q ss_pred cccCCCCCCCCcccCcceeeeccccccccCcccccccCCcccccCCCCCCeEEecccccccCCCCCCCcchhHHHHHHHH
Q 005805 512 IDEYPPDANQGFDIPSALISFPSFNARMNFSEDEFLNNSPILSKFQETSPVLSYTEVLLIPLTTPDFSMPYNVITITCTV 591 (676)
Q Consensus 512 ~~EYPPDANrGFdIpsAvIt~~~~~~~~~~~~~~~~~~spl~~~~~~~~~~~iyT~~LLl~LPTPDFSMPYNVI~lTsTV 591 (676)
|+||||||||||+||||||++++... +.+.+.+||++|||.|||||||||||||||||||
T Consensus 447 ~~EYPPDANhGf~Ip~Aiis~~~~~s--------------------~~sl~sl~TeaLLv~LpTPDFSMPYNVIcltcTv 506 (575)
T KOG2407|consen 447 LDEYPPDANHGFYIPAAIISVQDPES--------------------NTSLYSLHTEALLVSLPTPDFSMPYNVICLTCTV 506 (575)
T ss_pred hhhCCCCCCCCcccCcceEEEECCCC--------------------CccceeeeeeeEEEecCCCCCCCceeEEeeehhh
Confidence 99999999999999999999976311 2345679999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhh-hhcCcchhhHHHHHHHHHHHHcCCCCCCCCCCCCCCccchHHHHHHH
Q 005805 592 FALYFGSLLNVLRRRVDEEERILR-SRAGHKAGWISQLLSRLSAKLRGRPQEQPTSSLPHSFISFRLVLKIL 662 (676)
Q Consensus 592 iAL~FGsi~NlltRr~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (676)
|||+||+|+|++|||++.+|+..+ .++.. +++++++|++|+||+...+......++..|.+.+++.+
T Consensus 507 ~AL~FG~i~nlltrr~~~~e~~~~~~~~~~----lk~ll~ki~~k~~a~~~~p~~~ea~~gv~s~~~~l~~~ 574 (575)
T KOG2407|consen 507 FALVFGPIYNLLTRRFVPVEKKSQWGRKSG----LKRLLNKIFRKLRARMGDPNLNEARRGVESYFEKLNEL 574 (575)
T ss_pred HHHHhhhHHHHHhhheeeeeecccccchhH----HHHHHHHHHHHhhcccCCCChhHHHHhHHHHHHhhccC
Confidence 999999999999999665554433 33333 45999999999999988887777778888888888754
No 3
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=69.29 E-value=26 Score=32.34 Aligned_cols=83 Identities=11% Similarity=0.183 Sum_probs=54.4
Q ss_pred cccEEEEEecCCCCCCCCCccccCCCceeEEEEEEeecceeeEeeeEEEEEEcCCccc------------ccccceeEEe
Q 005805 407 RGAIAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRA------------MADVVDKIRV 474 (676)
Q Consensus 407 rGgl~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWf~r~ylHTL~v~~~g~~~~------------~~~~i~~~~y 474 (676)
+=.+.-.+.|++ +.++++.|.=.||. .-.++.+.+.++|.... ..+. ...-.
T Consensus 20 ~t~v~q~f~N~~-------------~~~~E~~y~fpLp~--~A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~~a-~~~g~ 83 (118)
T PF08487_consen 20 RTTVTQTFENPS-------------SEPLEAVYSFPLPE--GAAISGFSMWIGGRTIEGEVKEKEEAKQEYEEA-VAQGK 83 (118)
T ss_pred EEEEEEEEECCC-------------CCcEEEEEEeECCC--CeEEEEEEEEECCEEEEEEEecHHHHHHHHHHH-HHcCC
Confidence 344556888986 57899999999998 55677788888774321 0011 11122
Q ss_pred cCCC-CCCCCce--EEEEEEecCCCeEEEEEEeec
Q 005805 475 SPSK-DKVSPGV--MEMILKLPCGSKSAAFSLEFD 506 (676)
Q Consensus 475 ~Pa~-dR~rP~~--LEl~l~lP~~~St~~ls~~Fd 506 (676)
.|+. ...++.. +.+.+.|||+ +++++++.|.
T Consensus 84 ~a~lle~~~~~~~~F~~~vni~p~-~~v~i~l~Y~ 117 (118)
T PF08487_consen 84 SAALLEQSDPNVEVFTVSVNIPPN-EEVTIELTYV 117 (118)
T ss_pred CchhhcccCCCCcEEEEEEEeCCC-CEEEEEEEEE
Confidence 3333 2335555 8888899998 9999887764
No 4
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=64.44 E-value=78 Score=33.85 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=47.2
Q ss_pred cccccEEEEEecCCCCCCCCCccccCCCceeEEEEEEeecceeeEeeeEEEEEEcCCcccccccceeEEecCCCCCCCCc
Q 005805 405 NERGAIAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVVDKIRVSPSKDKVSPG 484 (676)
Q Consensus 405 qerGgl~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWf~r~ylHTL~v~~~g~~~~~~~~i~~~~y~Pa~dR~rP~ 484 (676)
..+=+..+.++|.. +.++++.+.|.+|=-= --.++|++.. ..+...+..-+
T Consensus 241 ~~~~~~~itv~N~~-------------~~~v~v~v~d~iPvs~---~~~I~V~~~~-------------~~~~~~~~~~g 291 (317)
T PF13598_consen 241 RRTYEYTITVRNNK-------------DEPVTVTVEDQIPVSE---DEDIKVELLE-------------PPEPNEDEKDG 291 (317)
T ss_pred EEEEEEEEEEECCC-------------CCCEEEEEEeCCCCCC---CceEEEEEcC-------------CCCCcccCCCC
Confidence 33456788999986 6889999999888310 0011222211 11112235678
Q ss_pred eEEEEEEecCCCeEEEEEEeec
Q 005805 485 VMEMILKLPCGSKSAAFSLEFD 506 (676)
Q Consensus 485 ~LEl~l~lP~~~St~~ls~~Fd 506 (676)
.++..++|||+ .+.+|++.|+
T Consensus 292 ~~~W~~~l~~g-~~~~l~~~y~ 312 (317)
T PF13598_consen 292 ILEWKVTLPPG-ESRTLEFSYE 312 (317)
T ss_pred EEEEEEEECCC-CEEEEEEEEE
Confidence 99999999999 9999888886
No 5
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.24 E-value=82 Score=36.48 Aligned_cols=77 Identities=25% Similarity=0.304 Sum_probs=48.3
Q ss_pred cccEEEEEecCCCCCCCCCccccCCCceeEEEEEEeecceeeEeeeEEEEEEcCCcccccccceeEEecCCCC--CCCCc
Q 005805 407 RGAIAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVVDKIRVSPSKD--KVSPG 484 (676)
Q Consensus 407 rGgl~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWf~r~ylHTL~v~~~g~~~~~~~~i~~~~y~Pa~d--R~rP~ 484 (676)
+=+..+.++|.. +.++.+.+.|.+|-- ==--++|.+..... |..+ +..=+
T Consensus 443 ~~~~~i~v~N~~-------------~~~v~v~v~d~~PvS---~d~~i~V~~~~~~~------------~~~~~~~~~~G 494 (525)
T TIGR02231 443 EYAYRITLKNLR-------------KEPERVQIEEQLPVS---ENEDIKVKLLSPTT------------PGYDEEDKKDG 494 (525)
T ss_pred EEEEEEEEEcCC-------------CCceEEEEEeeccCC---CCCeeEEEEecCCC------------ccccccccCCC
Confidence 455678999976 578999999999920 00012222211000 1111 12248
Q ss_pred eEEEEEEecCCCeEEEEEEeecccceecccCCCC
Q 005805 485 VMEMILKLPCGSKSAAFSLEFDKGFLHIDEYPPD 518 (676)
Q Consensus 485 ~LEl~l~lP~~~St~~ls~~FdK~fL~~~EYPPD 518 (676)
.++..++|||+ .+.+|+|.|+ -+||.|
T Consensus 495 ~~~W~l~L~pg-~~~~l~~~y~------v~~P~~ 521 (525)
T TIGR02231 495 ILEWKLTLKPG-EKRDLKFKFK------VEHPKD 521 (525)
T ss_pred eEEEEEEECCC-CeEEEEEEEE------EecCCC
Confidence 89999999998 9999999887 456655
No 6
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=55.94 E-value=28 Score=28.79 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=24.7
Q ss_pred cchhHHHHHH--HHHHHHHHHHHHHhhhhhhHHH
Q 005805 580 MPYNVITITC--TVFALYFGSLLNVLRRRVDEEE 611 (676)
Q Consensus 580 MPYNVI~lTs--TViAL~FGsi~NlltRr~~~~e 611 (676)
||.=-.+.+| ..+++.||..|-+..||+....
T Consensus 1 M~i~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s 34 (58)
T PF13314_consen 1 MNIGDLIYYILVIILIVLFGASFTLFIRRILINS 34 (58)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666667788 5677889999999999965543
No 7
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=35.05 E-value=46 Score=30.73 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=27.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 005805 576 PDFSMPYNVITITCTVFALYFGSLLNVLRRRVDEEE 611 (676)
Q Consensus 576 PDFSMPYNVI~lTsTViAL~FGsi~NlltRr~~~~e 611 (676)
=|-|+||+.|..++.+|.++++.-..+|-. +++||
T Consensus 62 kDvS~~F~L~~~~ti~lv~~~~~~I~lL~s-vG~e~ 96 (103)
T PF12955_consen 62 KDVSVPFWLFAGFTIALVVLVAGAIGLLFS-VGSEE 96 (103)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHH-cCCCC
Confidence 489999999999999888888777766654 44443
No 8
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=31.10 E-value=46 Score=27.31 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.1
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 005805 580 MPYNVITITCTVFALYFGSLL 600 (676)
Q Consensus 580 MPYNVI~lTsTViAL~FGsi~ 600 (676)
||+||..+.-.|+|++.|.|.
T Consensus 1 ~~~~~wlIIviVlgvIigNia 21 (55)
T PF11446_consen 1 STWNPWLIIVIVLGVIIGNIA 21 (55)
T ss_pred CcchhhHHHHHHHHHHHhHHH
Confidence 899999999999999999765
No 9
>TIGR03050 PS_I_psaK_plant photosystem I reaction center PsaK, plant form. This protein family is based on a model that separates the photosystem I PsaK subunit of chloroplasts from chloroplast PsaG protein and from Cyanobacterial PsaK, both of which show sequence similarity.
Probab=30.41 E-value=37 Score=30.15 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHHHHH
Q 005805 581 PYNVITITCTVFALYFGS 598 (676)
Q Consensus 581 PYNVI~lTsTViAL~FGs 598 (676)
|=|+|+.+||++||++|-
T Consensus 5 ~~~~IMi~~n~lal~~Gr 22 (83)
T TIGR03050 5 STNLIMVTSTTLMLFAGR 22 (83)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 569999999999999984
No 10
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=26.47 E-value=22 Score=38.89 Aligned_cols=30 Identities=33% Similarity=0.713 Sum_probs=24.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005805 578 FSMPYNVITITCTVFALYFGSLLNVLRRRVD 608 (676)
Q Consensus 578 FSMPYNVI~lTsTViAL~FGsi~NlltRr~~ 608 (676)
|=|||||.|.+|=-. ++=|.=||.=-++|+
T Consensus 35 f~~Pf~i~C~~C~~~-I~kG~rFNA~Ke~v~ 64 (324)
T PF04502_consen 35 FMMPFNIWCNTCGEY-IYKGVRFNARKEKVG 64 (324)
T ss_pred EcCCccCcCCCCccc-cccceeeeeeeEecC
Confidence 899999999999887 777777877555443
No 11
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=24.75 E-value=5.8e+02 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEecCCCeEEEEEEeecccceecccCCCC
Q 005805 489 ILKLPCGSKSAAFSLEFDKGFLHIDEYPPD 518 (676)
Q Consensus 489 ~l~lP~~~St~~ls~~FdK~fL~~~EYPPD 518 (676)
++-||.+ ++++++-. +++-.-|.-||.|
T Consensus 122 vi~iPkG-s~I~fst~-~~a~~~Yv~yPa~ 149 (152)
T PF06249_consen 122 VIFIPKG-STITFSTP-DYARFFYVTYPAN 149 (152)
T ss_dssp EEEE-TT--EEEEEEE-EEEEEEEEEESTT
T ss_pred EEEECCC-CEEEEecC-CCEEEEEEECCCc
Confidence 5778888 88888776 6788888999976
Done!