Query 005805
Match_columns 676
No_of_seqs 169 out of 233
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:53:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_K Photosystem 1 reaction 24.0 25 0.00085 30.0 1.1 29 570-598 3-31 (83)
2 2uwj_G Type III export protein 15.5 18 0.00063 32.2 -1.6 30 184-215 58-87 (115)
3 2p58_C Putative type III secre 14.2 18 0.00063 32.2 -1.9 28 186-215 61-88 (116)
4 1qez_A Ppase, S-ppase, protein 13.3 1.2E+02 0.004 29.1 3.2 33 481-514 8-40 (173)
5 2wsc_K Photosystem I reaction 11.9 49 0.0017 30.4 0.1 18 581-598 48-65 (131)
6 1rf3_B 24-residue peptide from 10.7 72 0.0025 21.1 0.5 7 576-582 13-19 (26)
7 3hzq_A Large-conductance mecha 10.3 2E+02 0.0067 25.9 3.4 30 577-606 27-57 (114)
8 2ls4_A High affinity copper up 12.5 68 0.0023 21.5 0.0 19 582-600 1-19 (26)
9 2bpa_3 Protein (subunit of bac 9.0 89 0.003 21.9 0.5 21 110-130 11-31 (37)
10 2bqx_A Inorganic pyrophosphata 8.6 1.8E+02 0.0063 27.7 2.8 30 483-513 12-41 (173)
No 1
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=23.96 E-value=25 Score=29.99 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=11.0
Q ss_pred cccCCCCCCCcchhHHHHHHHHHHHHHHH
Q 005805 570 LIPLTTPDFSMPYNVITITCTVFALYFGS 598 (676)
Q Consensus 570 Ll~LPTPDFSMPYNVI~lTsTViAL~FGs 598 (676)
+.++||+..|--=++|.+.|.++|+++|-
T Consensus 3 ~~t~~t~~Wsp~v~iIMI~cN~lai~igk 31 (83)
T 1jb0_K 3 LATLPDTTWTPSVGLVVILCNLFAIALGR 31 (83)
T ss_dssp -----------------CHHHHHHHHHHH
T ss_pred eeecCCCCCCCccceeehhHHHHHHHHHH
Confidence 45788888888889999999999999983
No 2
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=15.52 E-value=18 Score=32.20 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=24.8
Q ss_pred ecCCCCcccccCcchhhhccCCCCCccccccc
Q 005805 184 GTLPREAVCTENLTPWLKLLPCRDKAGLSALM 215 (676)
Q Consensus 184 a~LP~E~VCTENLTP~lKLLPCk~kaGLasLL 215 (676)
|..-.|+.|+-+|-||+.| |-.|+|+.+=+
T Consensus 58 Al~l~~~~c~pdlepw~AL--ce~rlGl~s~l 87 (115)
T 2uwj_G 58 ALAFAHGNPWPALEPWFAL--CEWHLGLGAAL 87 (115)
T ss_dssp HHGGGTTCCCGGGHHHHHH--HHHHTTCHHHH
T ss_pred HHHhcCCCCCchHHHHHHH--HHHhcccHHHH
Confidence 3444689999999999998 88999998754
No 3
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=14.20 E-value=18 Score=32.24 Aligned_cols=28 Identities=29% Similarity=0.684 Sum_probs=23.5
Q ss_pred CCCCcccccCcchhhhccCCCCCccccccc
Q 005805 186 LPREAVCTENLTPWLKLLPCRDKAGLSALM 215 (676)
Q Consensus 186 LP~E~VCTENLTP~lKLLPCk~kaGLasLL 215 (676)
+-.|+.|+-+|-||+.| |-.|+|+.+=+
T Consensus 61 ~l~~~~c~pdlepw~AL--ce~rlGl~s~l 88 (116)
T 2p58_C 61 QQGNKLAYPDLEPWLAL--CEYRLGLGSAL 88 (116)
T ss_dssp HHHTTSCCGGGHHHHHH--HHHHHTCHHHH
T ss_pred HhcCCCCCchHHHHHHH--HHHhcccHHHH
Confidence 33588999999999998 88899998754
No 4
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=13.26 E-value=1.2e+02 Score=29.15 Aligned_cols=33 Identities=18% Similarity=0.607 Sum_probs=23.2
Q ss_pred CCCceEEEEEEecCCCeEEEEEEeecccceeccc
Q 005805 481 VSPGVMEMILKLPCGSKSAAFSLEFDKGFLHIDE 514 (676)
Q Consensus 481 ~rP~~LEl~l~lP~~~St~~ls~~FdK~fL~~~E 514 (676)
..|..+.+.+.||.. |.+...++=++..++++.
T Consensus 8 ~~p~~~nvvIEIP~g-s~~KyE~dk~~g~l~~DR 40 (173)
T 1qez_A 8 NAPDVVNVLVEIPQG-SNIKYEYDDEEGVIKVDR 40 (173)
T ss_dssp TTTTSEEEEEEECTT-CCEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEEECCC-CCeEEEEecCCCCEEEEe
Confidence 368899999999998 885554444446666543
No 5
>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K*
Probab=11.85 E-value=49 Score=30.43 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHHH
Q 005805 581 PYNVITITCTVFALYFGS 598 (676)
Q Consensus 581 PYNVI~lTsTViAL~FGs 598 (676)
+=|+|++.||++||++|-
T Consensus 48 ~valIMi~~n~laLaiGR 65 (131)
T 2wsc_K 48 STNLIMVTTTTLMLFAGR 65 (131)
T ss_dssp TTTTTHHHHHHHHHTTTG
T ss_pred CccEEEehhHHHHHHHHH
Confidence 568999999999999883
No 6
>1rf3_B 24-residue peptide from lymphotoxin-B receptor; CD40, NF-KB signaling, LTBR, TNF receptor, TRAF3 crystallography, signaling protein; 3.50A {Homo sapiens} SCOP: j.116.1.1
Probab=10.72 E-value=72 Score=21.08 Aligned_cols=7 Identities=43% Similarity=0.795 Sum_probs=5.1
Q ss_pred CCCCcch
Q 005805 576 PDFSMPY 582 (676)
Q Consensus 576 PDFSMPY 582 (676)
|.|||||
T Consensus 13 ~~ls~p~ 19 (26)
T 1rf3_B 13 PGLSTPH 19 (26)
T ss_dssp CCSSCCC
T ss_pred cccCCcc
Confidence 5688887
No 7
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=10.30 E-value=2e+02 Score=25.87 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=25.2
Q ss_pred CCCcchhHHHHH-HHHHHHHHHHHHHHhhhh
Q 005805 577 DFSMPYNVITIT-CTVFALYFGSLLNVLRRR 606 (676)
Q Consensus 577 DFSMPYNVI~lT-sTViAL~FGsi~NlltRr 606 (676)
||=|--|||-|. ..||+-+||.+-|-|+..
T Consensus 27 ~Fi~rGNViDLAVgVIIG~AF~~IV~SlV~d 57 (114)
T 3hzq_A 27 EFALKGNVLDLAIAVVMGAAFNKIICSLVEN 57 (114)
T ss_dssp CCSSCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999885 566788888888888876
No 8
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=12.53 E-value=68 Score=21.55 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005805 582 YNVITITCTVFALYFGSLL 600 (676)
Q Consensus 582 YNVI~lTsTViAL~FGsi~ 600 (676)
||+-++.|.|++.++|-.+
T Consensus 1 YNg~l~iavvlGa~~Gyf~ 19 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFL 19 (26)
Confidence 8999999999999988654
No 9
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=9.05 E-value=89 Score=21.90 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=16.9
Q ss_pred cCCCCCCCCCCCCCCceEEEE
Q 005805 110 WGGFDPLSSNNAKPPGVELWA 130 (676)
Q Consensus 110 WG~p~p~~~~~~~~~GvELwA 130 (676)
=|.|.|.-|.+.+--|+.||-
T Consensus 11 pgrpqplrgtkgkrkgarlwy 31 (37)
T 2bpa_3 11 PGRPQPLRGTKGKRKGARLWY 31 (37)
T ss_dssp CSCCCCBCCSCCSSCCSCCCC
T ss_pred CCCCccccccccccccceEEE
Confidence 467778888888889999984
No 10
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=8.63 E-value=1.8e+02 Score=27.74 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=22.1
Q ss_pred CceEEEEEEecCCCeEEEEEEeecccceecc
Q 005805 483 PGVMEMILKLPCGSKSAAFSLEFDKGFLHID 513 (676)
Q Consensus 483 P~~LEl~l~lP~~~St~~ls~~FdK~fL~~~ 513 (676)
|..+.+.+.||.. |.+...++-++..++++
T Consensus 12 p~~~nvvIEIP~g-s~~KyE~dk~~g~i~~D 41 (173)
T 2bqx_A 12 ADSLCVVIEISKH-SNIKYELDKESGALMVD 41 (173)
T ss_dssp TTEEEEEEEECTT-CSEEEEECTTTCCEEEE
T ss_pred CCeEEEEEEECCC-CCeEEEEecCCCCEEEe
Confidence 8899999999998 88555554445566655
Done!