Query 005805
Match_columns 676
No_of_seqs 169 out of 233
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 07:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005805.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005805hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bvca1 d.15.9.1 (A:5-104) Glu 16.2 36 0.0027 27.1 2.6 27 81-107 2-30 (100)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 13.2 69 0.005 20.0 2.6 16 584-600 7-22 (30)
3 d2cora1 g.39.1.3 (A:43-73) Pin 9.8 12 0.00084 24.3 -2.0 9 203-211 23-31 (31)
4 d1odha_ d.239.1.1 (A:) Mgcm1 { 8.7 45 0.0033 29.1 0.8 31 198-231 105-139 (158)
5 d2prda_ b.40.5.1 (A:) Inorgani 6.9 1.4E+02 0.01 26.2 3.3 32 481-513 11-42 (174)
6 d1znca_ b.74.1.1 (A:) Carbonic 5.3 8.7E+02 0.063 21.4 8.5 71 121-197 136-212 (262)
7 d1f52a1 d.15.9.1 (A:1-100) Glu 5.3 1.7E+02 0.012 22.8 2.7 25 82-106 3-29 (100)
8 d1szqa_ e.44.1.1 (A:) 2-methyl 5.0 81 0.0059 31.6 0.5 17 577-599 335-351 (473)
9 d2retb1 d.24.1.5 (B:32-197) Ty 4.7 3.2E+02 0.023 22.9 4.4 37 91-134 112-149 (166)
10 d1gph11 c.61.1.1 (1:235-465) G 4.4 2E+02 0.014 26.4 2.8 22 81-102 120-141 (231)
No 1
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.23 E-value=36 Score=27.12 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.7
Q ss_pred cHHHHHHhHhcCeeEEEEEee--eeeccC
Q 005805 81 PKAIAQLVKKFRVKEMELSFT--QGRWRY 107 (676)
Q Consensus 81 Prsl~qil~~~~v~ELhLsfT--qGrW~~ 107 (676)
|..|.+.+++-+|+.+.+.|| .|+|+.
T Consensus 2 ~~ei~~~i~~~~I~~V~~~f~Dl~G~~r~ 30 (100)
T d2bvca1 2 PDDVFKLAKDEKVEYVDVRFCDLPGIMQH 30 (100)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHCCCeEEEEEEECCCCCceE
Confidence 677899999999999999998 788874
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.17 E-value=69 Score=20.03 Aligned_cols=16 Identities=31% Similarity=0.837 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005805 584 VITITCTVFALYFGSLL 600 (676)
Q Consensus 584 VI~lTsTViAL~FGsi~ 600 (676)
|.|+.| +|||+|=.||
T Consensus 7 v~ifac-~i~lfffaif 22 (30)
T d2axtt1 7 VFIFAC-IIALFFFAIF 22 (30)
T ss_dssp HHHHHH-HHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHH
Confidence 667777 5677776555
No 3
>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.84 E-value=12 Score=24.28 Aligned_cols=9 Identities=67% Similarity=1.453 Sum_probs=7.1
Q ss_pred cCCCCCccc
Q 005805 203 LPCRDKAGL 211 (676)
Q Consensus 203 LPCk~kaGL 211 (676)
|||.+|.|+
T Consensus 23 LpChdKmGi 31 (31)
T d2cora1 23 LPCHDKMGV 31 (31)
T ss_dssp HHHHHTTSC
T ss_pred EecccccCC
Confidence 788888875
No 4
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.66 E-value=45 Score=29.15 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=21.0
Q ss_pred hhhhccCCCCCccc----ccccCCCccccccceeeeEE
Q 005805 198 PWLKLLPCRDKAGL----SALMDRPSIYRGFYHSQRLR 231 (676)
Q Consensus 198 P~lKLLPCk~kaGL----asLLd~~~lf~s~yhS~~i~ 231 (676)
-=|.++||+|+.|- .--.++..|| |++-|.|
T Consensus 105 g~L~~~~Crgh~GypVthfWr~~~~~i~---fqakG~H 139 (158)
T d1odha_ 105 GPLKLIPCRGHGGFPVTNFWRHDGRFIF---FQSKGEH 139 (158)
T ss_dssp CBEEEECCCTBTTBCCEEEEEECSSBEE---EEEECCC
T ss_pred CceeEEeccCccCCcceEEEEEcCCEEE---Eeccccc
Confidence 44679999999997 2334555666 6665554
No 5
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]}
Probab=6.88 E-value=1.4e+02 Score=26.23 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=24.8
Q ss_pred CCCceEEEEEEecCCCeEEEEEEeecccceecc
Q 005805 481 VSPGVMEMILKLPCGSKSAAFSLEFDKGFLHID 513 (676)
Q Consensus 481 ~rP~~LEl~l~lP~~~St~~ls~~FdK~fL~~~ 513 (676)
..|..+.+++++|.. |..-..|+=+-..++++
T Consensus 11 ~~p~~vn~viEIP~g-s~~KyE~d~~~g~~~~d 42 (174)
T d2prda_ 11 KAPEVVHMVIEVPRG-SGNKYEYDPDLGAIKLD 42 (174)
T ss_dssp TTTTEEEEEEEECTT-CCEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEEECCC-CCccEEEccCCCcEEEE
Confidence 368999999999998 88877666556666655
No 6
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens), isozyme IV [TaxId: 9606]}
Probab=5.31 E-value=8.7e+02 Score=21.44 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=33.8
Q ss_pred CCCCceEEEEEEeCCchhHHHHHHHHHHHhhhhhhhccccccCCceeec-CcccccCCC----ceeEe-ecCCCCccccc
Q 005805 121 AKPPGVELWAVFDVPQSLVDVYWRNLTHTLSGLFCASINFLESSTTYSA-PELTFKPSF----GNLRY-GTLPREAVCTE 194 (676)
Q Consensus 121 ~~~~GvELwA~~~~~~~~~d~~W~~LtnaLSGLFCASLNfidst~t~~~-P~~sf~p~~----~~l~~-a~LP~E~VCTE 194 (676)
..+.|+-+-|.|-...+.....+..+...+..+ -..+.+.++.. ....+-|.. ++.+| |+| .-+-|||
T Consensus 136 ~~~~~l~Vv~v~~~~~~~~n~~l~~i~~~~~~i-----~~~~~~~~~~~~~~~~llp~~~~~~~yy~Y~GSL-TtPPCtE 209 (262)
T d1znca_ 136 DPEDEIAVLAFLVEAGTQVNEGFQPLVEALSNI-----PKPEMSTTMAESSLLDLLPKEEKLRHYFRYLGSL-TTPTCDE 209 (262)
T ss_dssp SCTTSEEEEEEEEEEESSCCTTTHHHHHHGGGC-----CSTTCEEEEEEECGGGTSCCGGGGGCEEEEEECC-SSTTCCS
T ss_pred cCCCceEEEEEEeccCCCCCHhHHHHHhhhhhc-----cCCCCceecCCCChHHhhccccccCceEEEeeec-CCCCCcC
Confidence 455676666666543222233455566555422 12222222210 111233321 34554 899 5589999
Q ss_pred Ccc
Q 005805 195 NLT 197 (676)
Q Consensus 195 NLT 197 (676)
+.+
T Consensus 210 ~V~ 212 (262)
T d1znca_ 210 KVV 212 (262)
T ss_dssp CEE
T ss_pred ceE
Confidence 953
No 7
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=5.26 E-value=1.7e+02 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=19.9
Q ss_pred HHHHHHhHhcCeeEEEEEee--eeecc
Q 005805 82 KAIAQLVKKFRVKEMELSFT--QGRWR 106 (676)
Q Consensus 82 rsl~qil~~~~v~ELhLsfT--qGrW~ 106 (676)
..|.+.++.-+|+.+++.|| .|+|+
T Consensus 3 e~i~~~i~~~~I~~V~~~F~D~~G~~~ 29 (100)
T d1f52a1 3 EHVLTMLNEHEVKFVDLRFTDTKGKEQ 29 (100)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSCEE
T ss_pred HHHHHHHHHCCCeEEEEEEECCCCcee
Confidence 35778889999999999998 44444
No 8
>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia coli [TaxId: 562]}
Probab=5.03 E-value=81 Score=31.63 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=13.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHH
Q 005805 577 DFSMPYNVITITCTVFALYFGSL 599 (676)
Q Consensus 577 DFSMPYNVI~lTsTViAL~FGsi 599 (676)
+|||||.| .+||..|.+
T Consensus 335 ~fS~~y~v------A~aL~~G~~ 351 (473)
T d1szqa_ 335 DHCIQYMV------AIPLLFGRL 351 (473)
T ss_dssp TTCHHHHH------HHHHHHSCC
T ss_pred cccHHHHH------HHHHHcCCC
Confidence 59999987 567788765
No 9
>d2retb1 d.24.1.5 (B:32-197) Type II secretory pathway component EpsJ {Vibrio vulnificus [TaxId: 672]}
Probab=4.72 E-value=3.2e+02 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=27.7
Q ss_pred cCeeEEEEEee-eeeccCcccCCCCCCCCCCCCCCceEEEEEEeC
Q 005805 91 FRVKEMELSFT-QGRWRYEQWGGFDPLSSNNAKPPGVELWAVFDV 134 (676)
Q Consensus 91 ~~v~ELhLsfT-qGrW~~~~WG~p~p~~~~~~~~~GvELwA~~~~ 134 (676)
-+|.+++++|- .|+|.. .|... ..-|-|||+--.++.
T Consensus 112 ~~V~~~~~r~~~~~~W~~-~W~~~------~~lP~aVei~l~~~~ 149 (166)
T d2retb1 112 SDVEELNVRFYDGKQWIN-EWSNE------LTLPAAISVELTLKD 149 (166)
T ss_dssp SSEEEEEEEEECSSCEES-CCCCS------SBCCSEEEEEEEETT
T ss_pred ccccEEEEEEEeCCcccc-cCCCC------CCCCceEEEEEEeCC
Confidence 57999999987 667874 58652 256899999877763
No 10
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.40 E-value=2e+02 Score=26.38 Aligned_cols=22 Identities=9% Similarity=0.338 Sum_probs=19.9
Q ss_pred cHHHHHHhHhcCeeEEEEEeee
Q 005805 81 PKAIAQLVKKFRVKEMELSFTQ 102 (676)
Q Consensus 81 Prsl~qil~~~~v~ELhLsfTq 102 (676)
=|.|.++|++.|.+|.|++.+.
T Consensus 120 ~k~iv~~lr~aGakeVh~~i~s 141 (231)
T d1gph11 120 SRRIVTMLREAGATEVHVKISS 141 (231)
T ss_dssp HHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHcCCCeEEEEecc
Confidence 4679999999999999999875
Done!