Query 005806
Match_columns 676
No_of_seqs 568 out of 2481
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 7.1E-43 1.5E-47 381.2 12.5 218 449-673 83-301 (545)
2 cd02671 Peptidase_C19O A subfa 100.0 1.1E-33 2.4E-38 304.0 19.1 181 470-674 17-216 (332)
3 cd02663 Peptidase_C19G A subfa 100.0 5.8E-34 1.2E-38 301.5 16.7 174 479-674 1-183 (300)
4 cd02660 Peptidase_C19D A subfa 100.0 1.3E-33 2.8E-38 301.1 19.4 193 478-674 1-211 (328)
5 cd02661 Peptidase_C19E A subfa 100.0 1.3E-33 2.9E-38 296.1 18.9 197 477-674 1-198 (304)
6 cd02668 Peptidase_C19L A subfa 100.0 7.3E-33 1.6E-37 296.1 18.5 182 479-674 1-192 (324)
7 cd02658 Peptidase_C19B A subfa 100.0 7.9E-32 1.7E-36 285.7 18.7 180 479-674 1-210 (311)
8 cd02664 Peptidase_C19H A subfa 100.0 3E-31 6.5E-36 284.3 16.4 168 479-674 1-170 (327)
9 cd02659 peptidase_C19C A subfa 100.0 2.4E-30 5.1E-35 276.7 17.5 186 476-674 1-187 (334)
10 cd02657 Peptidase_C19A A subfa 100.0 4.2E-30 9E-35 271.6 17.6 180 479-673 1-190 (305)
11 COG5533 UBP5 Ubiquitin C-termi 100.0 7.8E-31 1.7E-35 267.9 10.8 204 470-673 64-299 (415)
12 cd02667 Peptidase_C19K A subfa 100.0 3.3E-30 7.1E-35 270.3 14.0 136 479-666 1-139 (279)
13 cd02669 Peptidase_C19M A subfa 100.0 7.8E-29 1.7E-33 275.9 21.1 225 424-673 61-326 (440)
14 cd02666 Peptidase_C19J A subfa 99.9 6.6E-27 1.4E-31 252.2 15.1 170 477-654 1-205 (343)
15 COG5560 UBP12 Ubiquitin C-term 99.9 5.8E-27 1.3E-31 257.0 9.3 160 475-634 263-449 (823)
16 KOG1868 Ubiquitin C-terminal h 99.9 5.5E-26 1.2E-30 258.6 8.3 197 475-671 299-530 (653)
17 cd02662 Peptidase_C19F A subfa 99.9 3.3E-25 7.2E-30 227.8 12.0 114 479-664 1-119 (240)
18 KOG0944 Ubiquitin-specific pro 99.9 7.4E-25 1.6E-29 242.5 9.9 184 471-672 302-503 (763)
19 COG5207 UBP14 Isopeptidase T [ 99.9 2.1E-23 4.6E-28 224.2 10.2 180 477-672 303-491 (749)
20 cd02674 Peptidase_C19R A subfa 99.9 5.9E-23 1.3E-27 207.8 10.4 115 479-674 1-120 (230)
21 KOG1866 Ubiquitin carboxyl-ter 99.9 8.7E-23 1.9E-27 227.3 5.3 186 475-673 93-281 (944)
22 KOG1867 Ubiquitin-specific pro 99.9 4.3E-22 9.4E-27 222.7 10.7 197 475-673 159-369 (492)
23 KOG1863 Ubiquitin carboxyl-ter 99.9 4.7E-22 1E-26 241.5 10.5 187 475-676 168-355 (1093)
24 COG5077 Ubiquitin carboxyl-ter 99.8 3.3E-22 7.2E-27 222.8 5.2 188 468-672 184-371 (1089)
25 PF00443 UCH: Ubiquitin carbox 99.8 6.5E-21 1.4E-25 193.5 9.6 147 477-623 1-155 (269)
26 cd02673 Peptidase_C19Q A subfa 99.8 1.2E-20 2.6E-25 195.0 11.5 138 480-673 2-140 (245)
27 KOG1873 Ubiquitin-specific pro 99.8 1.4E-19 3.1E-24 202.5 8.7 148 475-634 203-367 (877)
28 PF13423 UCH_1: Ubiquitin carb 99.8 1.5E-18 3.2E-23 183.6 15.4 187 478-671 1-193 (295)
29 cd02665 Peptidase_C19I A subfa 99.7 4E-18 8.7E-23 174.2 9.1 116 479-661 1-116 (228)
30 cd02257 Peptidase_C19 Peptidas 99.7 8.1E-18 1.8E-22 167.8 11.0 128 479-673 1-133 (255)
31 KOG4598 Putative ubiquitin-spe 99.7 5.4E-18 1.2E-22 187.5 -0.3 159 475-672 85-248 (1203)
32 KOG2026 Spindle pole body prot 99.6 4.9E-15 1.1E-19 156.5 14.8 218 417-651 68-316 (442)
33 cd02672 Peptidase_C19P A subfa 99.6 2.1E-16 4.6E-21 165.5 3.3 134 475-674 13-150 (268)
34 KOG1870 Ubiquitin C-terminal h 99.6 1.5E-15 3.2E-20 180.9 6.9 160 475-634 244-427 (842)
35 KOG1864 Ubiquitin-specific pro 99.6 2.5E-15 5.4E-20 171.3 6.8 198 476-673 231-456 (587)
36 KOG1871 Ubiquitin-specific pro 99.5 4.6E-14 9.9E-19 149.8 10.2 194 475-673 26-296 (420)
37 KOG1872 Ubiquitin-specific pro 99.2 1.3E-11 2.8E-16 134.3 4.8 207 432-649 63-280 (473)
38 PF01753 zf-MYND: MYND finger; 98.9 5.8E-10 1.3E-14 82.1 1.9 37 103-140 1-37 (37)
39 KOG1710 MYND Zn-finger and ank 98.7 5E-09 1.1E-13 108.0 0.3 43 100-143 319-362 (396)
40 KOG1275 PAB-dependent poly(A) 98.4 1.6E-07 3.6E-12 108.6 5.2 186 476-670 498-713 (1118)
41 cd02670 Peptidase_C19N A subfa 98.1 3.5E-06 7.6E-11 87.4 5.6 72 560-653 22-95 (241)
42 KOG1864 Ubiquitin-specific pro 97.4 0.00033 7.1E-09 81.1 7.9 100 480-579 34-152 (587)
43 KOG3612 PHD Zn-finger protein 96.8 0.00048 1E-08 77.0 1.7 44 100-146 527-570 (588)
44 KOG2061 Uncharacterized MYND Z 92.8 0.067 1.4E-06 58.1 2.5 50 99-148 135-184 (362)
45 PLN03158 methionine aminopepti 92.3 0.12 2.5E-06 57.8 3.7 41 99-140 8-55 (396)
46 PF13824 zf-Mss51: Zinc-finger 91.0 0.29 6.3E-06 39.4 3.6 44 102-146 1-48 (55)
47 COG5560 UBP12 Ubiquitin C-term 90.5 0.1 2.2E-06 60.0 0.9 38 636-673 673-710 (823)
48 KOG1870 Ubiquitin C-terminal h 85.8 0.22 4.7E-06 60.8 -0.4 37 637-673 695-731 (842)
49 KOG1873 Ubiquitin-specific pro 83.8 0.46 1E-05 55.8 1.1 30 637-666 677-706 (877)
50 PF05408 Peptidase_C28: Foot-a 79.3 1.1 2.5E-05 44.5 1.9 24 475-498 31-54 (193)
51 PF15499 Peptidase_C98: Ubiqui 78.7 4.1 8.9E-05 42.7 5.8 28 481-508 6-33 (275)
52 PF04438 zf-HIT: HIT zinc fing 78.2 1.3 2.8E-05 31.3 1.4 28 101-129 3-30 (30)
53 KOG3362 Predicted BBOX Zn-fing 75.8 1.5 3.2E-05 41.9 1.5 35 98-133 116-150 (156)
54 PF08715 Viral_protease: Papai 72.7 6.3 0.00014 42.9 5.6 78 476-577 101-179 (320)
55 KOG2857 Predicted MYND Zn-fing 68.7 2.4 5.3E-05 40.4 1.2 37 100-142 5-44 (157)
56 KOG3556 Familial cylindromatos 54.8 12 0.00027 42.7 3.7 24 476-499 367-390 (724)
57 PRK01343 zinc-binding protein; 54.2 13 0.00028 30.3 2.8 29 100-133 9-37 (57)
58 PF14353 CpXC: CpXC protein 53.7 11 0.00024 35.1 2.7 49 610-669 1-49 (128)
59 KOG1871 Ubiquitin-specific pro 53.2 7.3 0.00016 43.1 1.6 179 475-655 176-404 (420)
60 PF09889 DUF2116: Uncharacteri 46.0 19 0.00042 29.5 2.6 32 100-138 3-34 (59)
61 KOG4317 Predicted Zn-finger pr 33.8 16 0.00035 39.3 0.5 36 101-142 8-44 (383)
62 KOG2738 Putative methionine am 32.8 22 0.00049 38.2 1.4 41 100-141 6-53 (369)
63 PLN03144 Carbon catabolite rep 32.5 34 0.00073 40.5 2.9 39 101-140 60-109 (606)
64 PF12855 Ecl1: Life-span regul 30.8 25 0.00054 27.0 1.0 30 101-133 7-36 (43)
65 PRK13275 mtrF tetrahydromethan 27.9 48 0.001 28.0 2.2 18 11-28 50-67 (67)
66 PF10013 DUF2256: Uncharacteri 24.0 21 0.00046 27.3 -0.4 29 101-129 9-40 (42)
67 PF14205 Cys_rich_KTR: Cystein 23.3 76 0.0016 25.7 2.5 10 659-668 29-38 (55)
68 PRK03824 hypA hydrogenase nick 23.0 1.6E+02 0.0035 27.9 5.2 50 606-667 66-116 (135)
69 PF13719 zinc_ribbon_5: zinc-r 22.5 49 0.0011 24.3 1.2 21 102-122 4-36 (37)
70 TIGR02507 MtrF tetrahydrometha 21.5 62 0.0014 27.1 1.7 16 11-26 50-65 (65)
71 PF13717 zinc_ribbon_4: zinc-r 20.2 54 0.0012 24.0 1.0 21 102-122 4-36 (36)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-43 Score=381.23 Aligned_cols=218 Identities=48% Similarity=0.819 Sum_probs=203.3
Q ss_pred hhhhcccccCChhHHhhhhhcccccCCCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHH
Q 005806 449 DQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQ 528 (676)
Q Consensus 449 ~i~~~~~~lf~~e~~~k~~~~~~~~~~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~ 528 (676)
++..|.++|||++.+. +.|+++. ..++||.|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.
T Consensus 83 ~~~~p~k~Lfp~e~~~--~~~~~~~-~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~ 159 (545)
T KOG1865|consen 83 GNAPPAKVLFPYEKLP--LSSDRPA-AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQA 159 (545)
T ss_pred CcCCcchhccccceec--ccccccc-cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHH
Confidence 4556779999999998 5677766 788999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHhhC-CCCCChHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEE
Q 005806 529 HVMMLRES-AGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRL 607 (676)
Q Consensus 529 Lf~~L~~s-~~~isP~~fl~~L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l 607 (676)
++...... +.+|+|..|+..|+.+..+|+.|.|+||||||+++||.|+..++ ++....++..+++++|+++|+|.+
T Consensus 160 hi~~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL---~g~~~~~~~sq~ttlv~~iFGG~L 236 (545)
T KOG1865|consen 160 HITRALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL---PGHKQVDPRSQDTTLVHQIFGGYL 236 (545)
T ss_pred HHHHHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc---CCCccCCcccccceehhhhhccch
Confidence 88766544 45999999999999999999999999999999999999999986 666778888999999999999999
Q ss_pred EEEEEeCCCCCeeeeeeeeeeEEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 608 WSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 608 ~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
+++|+|..|+++|.++|+.++|+|+|. ...+|+++|++|+++|.|+|+|+|+|++|+++++|.|.
T Consensus 237 rS~vkC~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~ 301 (545)
T KOG1865|consen 237 RSQIKCLHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQ 301 (545)
T ss_pred hhceecccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccce
Confidence 999999999999999999999999999 58999999999999999999999999999999999985
No 2
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-33 Score=303.98 Aligned_cols=181 Identities=26% Similarity=0.338 Sum_probs=150.4
Q ss_pred ccccCCCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhC-CCCCChHHHHHH
Q 005806 470 EVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES-AGPLSPGRILSH 548 (676)
Q Consensus 470 ~~~~~~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s-~~~isP~~fl~~ 548 (676)
++.+..+++||.|+||||||||+||+|+|+|+|++++++...... ....+..+..++..++.. ...+.|..|+..
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~----~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~~ 92 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS----SVEQLQSSFLLNPEKYNDELANQAPRRLLNA 92 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC----cHHHHHHHHHHHHHHHhhcccccCHHHHHHH
Confidence 344557899999999999999999999999999999876431111 011122222233334433 345679999999
Q ss_pred HHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeee
Q 005806 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (676)
Q Consensus 549 L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~ 628 (676)
++..++.|..+.||||||||.+|||.|++ +|.++|+|++.++++|..|++.+.++|+|++
T Consensus 93 l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~ 152 (332)
T cd02671 93 LREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------LVEKDFQGQLVLRTRCLECETFTERREDFQD 152 (332)
T ss_pred HHHhccccCCccccCHHHHHHHHHHHHHH--------------------HHHhhhceEEEEEEEeCCCCCeeceecccEE
Confidence 99999999999999999999999999984 4678999999999999999999999999999
Q ss_pred EEEecCCCC------------------CcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 629 LTLEIYGWV------------------ESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 629 LSL~Ip~~~------------------~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
|+|+|++.. .+|++||+.|+++|.|+|+|+|+|++|+++++|+|+-
T Consensus 153 lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~ 216 (332)
T cd02671 153 ISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSL 216 (332)
T ss_pred EEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEE
Confidence 999999642 5899999999999999999999999999999999863
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.8e-34 Score=301.48 Aligned_cols=174 Identities=29% Similarity=0.484 Sum_probs=152.9
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCC---CCCChHHHHHHHHhhcCC
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRSISCQ 555 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~---~~isP~~fl~~L~~~~~~ 555 (676)
||.|+|||||||||||+|+| .+++++|+.||..|+... ..++|..|+++++...+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 99999999999999999987 468899999999998653 569999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCC------CCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeE
Q 005806 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESK------VDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (676)
Q Consensus 556 F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~------~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~L 629 (676)
|..++||||||||.+|||.||+++......... ........++|.++|+|++.+.++|..|++.+.+.|+|++|
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~L 139 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDL 139 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEe
Confidence 999999999999999999999998543211100 01122356789999999999999999999999999999999
Q ss_pred EEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 630 TLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 630 SL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
+|+|++ ..+|++||+.|+++|.|+|+|+|+|++|+++++|+|..
T Consensus 140 sl~i~~-~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~ 183 (300)
T cd02663 140 SIDVEQ-NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRM 183 (300)
T ss_pred ccCCCC-cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEE
Confidence 999997 78999999999999999999999999999999998864
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-33 Score=301.09 Aligned_cols=193 Identities=31% Similarity=0.495 Sum_probs=165.9
Q ss_pred CCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCc--cCCCCCchHHHHHHHHHHHHhhC--CCCCChHHHHHHHHhhc
Q 005806 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS--ACCGKDWCLMCELEQHVMMLRES--AGPLSPGRILSHMRSIS 553 (676)
Q Consensus 478 ~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~--~~~~~~~~Ll~~L~~Lf~~L~~s--~~~isP~~fl~~L~~~~ 553 (676)
+||.|+|||||||||||+|+|+|+|+++|+...+.. .......|++++|.++|..|+.. ..++.|..|+..++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 699999999999999999999999999999865543 22345679999999999999643 36789999999999888
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEec
Q 005806 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (676)
Q Consensus 554 ~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~I 633 (676)
+.|.++.||||||||.+|||.||+++...... ........++|.++|+|.+.+.++|..|++.+.+.|+|+.|+|+|
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i 157 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE---ANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDI 157 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhccccc---ccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeec
Confidence 89999999999999999999999987543221 111123357899999999999999999999999999999999999
Q ss_pred CCC--------------CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 634 YGW--------------VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 634 p~~--------------~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
|.. ..+|++||+.|+++|.+++.+ |+|++|++++++.|+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~ 211 (328)
T cd02660 158 PNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQL 211 (328)
T ss_pred cccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEE
Confidence 963 289999999999999999877 9999999999988763
No 5
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-33 Score=296.11 Aligned_cols=197 Identities=51% Similarity=0.830 Sum_probs=171.7
Q ss_pred CCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHh-hCCCCCChHHHHHHHHhhcCC
Q 005806 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ESAGPLSPGRILSHMRSISCQ 555 (676)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~-~s~~~isP~~fl~~L~~~~~~ 555 (676)
|+||.|+|||||||||||+|+++|+|+++++...+...+.....+++++|+.++..++ ..+..+.|..|.+++....+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 6899999999999999999999999999998766655555667899999999998876 456789999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCC
Q 005806 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG 635 (676)
Q Consensus 556 F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~ 635 (676)
|..+.||||+|||.+||+.|++++.................++|.++|+|++.+.++|..|+..+.++|+|+.|+|+|++
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 99999999999999999999998755432221112233456789999999999999999999999999999999999997
Q ss_pred CCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 636 WVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 636 ~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
..+|+++|+.|+.+|.++++++|+|++|++++.++|+.
T Consensus 161 -~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~ 198 (304)
T cd02661 161 -ADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQL 198 (304)
T ss_pred -CCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEE
Confidence 47999999999999999999999999999999988753
No 6
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-33 Score=296.08 Aligned_cols=182 Identities=21% Similarity=0.366 Sum_probs=157.6
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC---------CCCCchHHHHHHHHHHHHhhCC-CCCChHHHHHH
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---------CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~---------~~~~~~Ll~~L~~Lf~~L~~s~-~~isP~~fl~~ 548 (676)
||.|+||||||||+||+|+++|+|+++++........ .....+++++|+.||..|+.+. .+++|..|++.
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999875433210 0123689999999999998654 78999999998
Q ss_pred HHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeee
Q 005806 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMD 628 (676)
Q Consensus 549 L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~ 628 (676)
+. |..++||||||||.+|||.|++++.... .....++|.++|+|++.++++|..|++.+.+.|+|+.
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~--------~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~ 147 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSK--------NPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYE 147 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhcc--------CCcccchhhhhcceEEEEEEEeCCCCCccccccccEE
Confidence 84 6788999999999999999999874321 1123468999999999999999999999999999999
Q ss_pred EEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 629 LTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 629 LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
|+|+|++ ..+|+++|+.|+.+|.++|+|+|.|++|+++++|+|+.
T Consensus 148 l~l~i~~-~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~ 192 (324)
T cd02668 148 LELQLKG-HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRI 192 (324)
T ss_pred EEEEecc-cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEE
Confidence 9999996 67999999999999999999999999999999998863
No 7
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=7.9e-32 Score=285.71 Aligned_cols=180 Identities=22% Similarity=0.225 Sum_probs=155.2
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCc--cCCCCCchHHHHHHHHHHHHhhC---------------CCCCC
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSS--ACCGKDWCLMCELEQHVMMLRES---------------AGPLS 541 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~--~~~~~~~~Ll~~L~~Lf~~L~~s---------------~~~is 541 (676)
||.|+|||||||||||+|+++|+|+++|+...+.. ....+..+++++|.+++..|+.. ..+++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 99999999999999999999999999998733221 22235578999999999988752 24689
Q ss_pred hHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeee
Q 005806 542 PGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE 621 (676)
Q Consensus 542 P~~fl~~L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~ 621 (676)
|..|+..++...+.|..+.||||||||++||+.|++++... ....+.++|+|.++++++|..|++.+.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------~~~~~~~~f~~~~~~~i~C~~C~~~s~ 148 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------LGLNPNDLFKFMIEDRLECLSCKKVKY 148 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------ccCCchhheEEEeeEEEEcCCCCCEEE
Confidence 99999999999999999999999999999999999986311 123578999999999999999999999
Q ss_pred eeeeeeeEEEecCCC-------------CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 622 RYENIMDLTLEIYGW-------------VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 622 ~~E~F~~LSL~Ip~~-------------~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
+.|+|++|+|+||.. ..+|++||+.|+.+|.++ ++|++|++++.|+|+.
T Consensus 149 ~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~ 210 (311)
T cd02658 149 TSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTT 210 (311)
T ss_pred eecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEE
Confidence 999999999999853 349999999999999998 5899999999999874
No 8
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=3e-31 Score=284.32 Aligned_cols=168 Identities=34% Similarity=0.552 Sum_probs=147.9
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhC-CCCCChHH-HHHHHHhhcCCC
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES-AGPLSPGR-ILSHMRSISCQI 556 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s-~~~isP~~-fl~~L~~~~~~F 556 (676)
||.|+||||||||+||+|+++|+||+++++...... ....+++++|+.+|..|... ..++.|.. |+..++ .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~--~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL--GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc--CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cccc
Confidence 899999999999999999999999999998664321 23457889999999988654 45667765 776654 4679
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCCC
Q 005806 557 GDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW 636 (676)
Q Consensus 557 ~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~ 636 (676)
..++||||||||.+||+.|+. +|.++|+|++.+.++|..|++++.+.|+|..|+|+||
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~~--------------------~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-- 134 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLHT--------------------LIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-- 134 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHHH--------------------HHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC--
Confidence 999999999999999999982 5789999999999999999999999999999999998
Q ss_pred CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 637 VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 637 ~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
+|+++|+.|+++|.|+|+|+|+|++|+++++|+|+.
T Consensus 135 --sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~ 170 (327)
T cd02664 135 --SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEM 170 (327)
T ss_pred --CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEE
Confidence 899999999999999999999999999999998863
No 9
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2.4e-30 Score=276.66 Aligned_cols=186 Identities=25% Similarity=0.352 Sum_probs=154.6
Q ss_pred CCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCC-CCCChHHHHHHHHhhcC
Q 005806 476 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA-GPLSPGRILSHMRSISC 554 (676)
Q Consensus 476 gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~-~~isP~~fl~~L~~~~~ 554 (676)
|++||.|+||||||||+||+|+++|+|+++++....... .....+++++|+.+|..|+... ..+.|..+.........
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~-~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTED-DDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWD 79 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCccc-CcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCC
Confidence 579999999999999999999999999999998532211 2345789999999999998654 34455444311112234
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecC
Q 005806 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (676)
Q Consensus 555 ~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip 634 (676)
.|..+.||||+|||.+||+.|++++.. ....++|.++|+|.+...++|..|++.+.+.|+|+.|+|+++
T Consensus 80 ~~~~~~QqDa~Efl~~ll~~l~~~~~~-----------~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~ 148 (334)
T cd02659 80 SLNTFEQHDVQEFFRVLFDKLEEKLKG-----------TGQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVK 148 (334)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcc-----------CcccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcC
Confidence 688899999999999999999998632 122357899999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 635 GWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 635 ~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
+ ..+|+++|+.|+.+|.++|+|.|.|++|++++.++|+.
T Consensus 149 ~-~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~ 187 (334)
T cd02659 149 G-KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGV 187 (334)
T ss_pred C-CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEE
Confidence 6 67999999999999999999999999999999888763
No 10
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=4.2e-30 Score=271.63 Aligned_cols=180 Identities=24% Similarity=0.238 Sum_probs=155.0
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCcc-CCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcCCC-
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-CCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQI- 556 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~-~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~~F- 556 (676)
||.|+||||||||+||+|+++|+|+++++....... ......+++++|++||..|+.+...++|..|+..++...+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 899999999999999999999999999988654421 123457999999999999998888999999999999988888
Q ss_pred -----CCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCC-CeeeeeeeeeeEE
Q 005806 557 -----GDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS-HESERYENIMDLT 630 (676)
Q Consensus 557 -----~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~-~~S~~~E~F~~LS 630 (676)
..++||||||||.+||+.|++++.. .....++|.++|+|++.+.++|..|+ .++.+.|+|+.|+
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~----------~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Ls 150 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPG----------AGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQ 150 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcc----------cCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEE
Confidence 4559999999999999999998632 11245689999999999999999999 7999999999999
Q ss_pred EecCCC--CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 631 LEIYGW--VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 631 L~Ip~~--~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
|+|++. ..+|++||+.++++|.. ..|+.|+....++|.
T Consensus 151 l~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~ 190 (305)
T cd02657 151 CHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKT 190 (305)
T ss_pred eecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEE
Confidence 999974 46899999999987754 368999888777664
No 11
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.8e-31 Score=267.94 Aligned_cols=204 Identities=21% Similarity=0.314 Sum_probs=161.9
Q ss_pred ccccCCCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhcc-----CCccCCCCCc-hHHHHHHHHHHHHh-hCCCCCCh
Q 005806 470 EVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS-----HSSACCGKDW-CLMCELEQHVMMLR-ESAGPLSP 542 (676)
Q Consensus 470 ~~~~~~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~-----~~~~~~~~~~-~Ll~~L~~Lf~~L~-~s~~~isP 542 (676)
.+..+..|.||+|+|||||||++||||+.+..|...|+... ..+...+... .+...|..+...+. .....|+|
T Consensus 64 ~~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~ 143 (415)
T COG5533 64 KRKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISP 143 (415)
T ss_pred hhhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccch
Confidence 34455789999999999999999999999999998554432 2222222333 33444444444443 33477999
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCC--CC-C------c---------------ccccccc
Q 005806 543 GRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES--KV-D------P---------------RLQETTF 598 (676)
Q Consensus 543 ~~fl~~L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~--~~-~------~---------------~~~~~s~ 598 (676)
..|++.+...++.|.+.+|||+|||+.++||.||++++....... .. + + ...+.++
T Consensus 144 ~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~ 223 (415)
T COG5533 144 RNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSL 223 (415)
T ss_pred HHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHH
Confidence 999999999999999999999999999999999999753221100 00 0 0 0235688
Q ss_pred cccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCCC-CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 599 IQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 599 I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~-~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
|.+.|.|+..+.++|..|++.|+++.+|..|.++++.- ...|.|||++|.++|.|+|+.+|+|++|+++..++|+
T Consensus 224 v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~ 299 (415)
T COG5533 224 VAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKR 299 (415)
T ss_pred HHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchhe
Confidence 99999999999999999999999999999999999953 3579999999999999999999999999999999986
No 12
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=3.3e-30 Score=270.30 Aligned_cols=136 Identities=37% Similarity=0.576 Sum_probs=127.3
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcCCCCC
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~~F~~ 558 (676)
||.|+|||||||||||+|+|+|+|+++++. +|..|+..++...+.|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~~~~f~~ 48 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRKAPQFKG 48 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHhhHhhcC
Confidence 999999999999999999999999999875 778888888888889999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCC---
Q 005806 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG--- 635 (676)
Q Consensus 559 ~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~--- 635 (676)
++||||||||.+|||.|+. +|.++|+|++.++++|..|++.+.+.|+|++|+|+++.
T Consensus 49 ~~QqDA~Efl~~lld~l~~--------------------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~ 108 (279)
T cd02667 49 YQQQDSHELLRYLLDGLRT--------------------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIK 108 (279)
T ss_pred CchhhHHHHHHHHHHHHHH--------------------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccC
Confidence 9999999999999999982 57899999999999999999999999999999999874
Q ss_pred CCCcHHHHHHhcCCCcccCCCCccccccCCC
Q 005806 636 WVESLEDALTQFTSPEDLDGENMYKCARFVN 666 (676)
Q Consensus 636 ~~~SLed~L~~f~~~E~LdgdNky~CekCkk 666 (676)
...+|++||+.|+++|.|+|+|+|.|++|++
T Consensus 109 ~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~ 139 (279)
T cd02667 109 SECSIESCLKQFTEVEILEGNNKFACENCTK 139 (279)
T ss_pred CCCCHHHHHHhhcCeeEecCCCcccCCccCc
Confidence 2579999999999999999999999999988
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=7.8e-29 Score=275.88 Aligned_cols=225 Identities=19% Similarity=0.213 Sum_probs=167.3
Q ss_pred cccchhhcCCCCccccc-ccchhhhhhhhhcccccCChhHHhhhhhc--------ccccCCCCCCcccCCchhhHHHHHH
Q 005806 424 KMGIMKMMGLRKSTKLR-QDSSELWHDQHRKLKMLFPYEEFLKLFQY--------EVIDLLSPRGLLNCGNSCYANAVLQ 494 (676)
Q Consensus 424 ~~~s~k~~~L~~s~~~~-~~~~eL~~~i~~~~~~lf~~e~~~k~~~~--------~~~~~~gp~GL~NlGNTCYmNSVLQ 494 (676)
.++..+.+-++.+..+. ..+ ++|.....+.+..+.+..+... .....+|++||.|+|||||||||||
T Consensus 61 ~l~t~~~yc~~~~~~v~d~~l----~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ 136 (440)
T cd02669 61 NLETLKFYCLPDNYEIIDSSL----DDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQ 136 (440)
T ss_pred ECCCCCEEEeCCCCEEeCccH----HHHHHHhcCCCCHHHHHHhhhccccccccCCCCccCCccCccCCCCchHHHHHHH
Confidence 34456677777777773 222 2444444555555544322211 1223368999999999999999999
Q ss_pred HHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCC---CCCChHHHHHHHHhhc-CCCCCCCcccHHHHHHH
Q 005806 495 CLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRSIS-CQIGDGSQEDAHEFLRL 570 (676)
Q Consensus 495 ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~---~~isP~~fl~~L~~~~-~~F~~~~QQDAhEFL~~ 570 (676)
+|+|+|+||++|+...+.........+++++|..++..+|+.. .+++|..|+..++... +.|..++||||||||.+
T Consensus 137 ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~ 216 (440)
T cd02669 137 ALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSW 216 (440)
T ss_pred HHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHH
Confidence 9999999999999866543222345689999999999999753 7899999999998764 57899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCC---------------CeeeeeeeeeeEEEecCC
Q 005806 571 LVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS---------------HESERYENIMDLTLEIYG 635 (676)
Q Consensus 571 LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~---------------~~S~~~E~F~~LSL~Ip~ 635 (676)
|||.||+++... .....++|.++|+|++++.++|..|. ..+.+.+||++|+|+||.
T Consensus 217 LLd~L~~~l~~~---------~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~ 287 (440)
T cd02669 217 LLNTLHKDLGGS---------KKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPP 287 (440)
T ss_pred HHHHHHHHhccC---------CCCCCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCC
Confidence 999999987321 12346799999999999999987654 346778999999999996
Q ss_pred CC-------------CcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 636 WV-------------ESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 636 ~~-------------~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
.. .+|+|+|+. |.|+.|....+|+|.
T Consensus 288 ~~~~~~~~~~~~l~~~~l~e~L~k------------y~~~~c~~~~~a~k~ 326 (440)
T cd02669 288 PPLFKDGNEENIIPQVPLKQLLKK------------YDGKTETELKDSLKR 326 (440)
T ss_pred CccccccccccccCcccHHHHHHh------------cCCccceecccceEE
Confidence 31 456666643 667788777777664
No 14
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=6.6e-27 Score=252.17 Aligned_cols=170 Identities=21% Similarity=0.278 Sum_probs=137.5
Q ss_pred CCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCcc-----------CC---------CCCchHHHHHHHHHHHHhhC
Q 005806 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSA-----------CC---------GKDWCLMCELEQHVMMLRES 536 (676)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~-----------~~---------~~~~~Ll~~L~~Lf~~L~~s 536 (676)
|+||.|+||||||||+||+|+++|+||++++....... +. ....+++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999998542211 00 01236999999999999876
Q ss_pred C-CCCChHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCC--CCCCcccccccccccccceEEEEEEEe
Q 005806 537 A-GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKC 613 (676)
Q Consensus 537 ~-~~isP~~fl~~L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~--~~~~~~~~~~s~I~~iF~G~l~s~i~C 613 (676)
. .++.|..++..+. ..||||+||+..||++|+.++...-... ..........++|.++|.|++++.++|
T Consensus 81 ~~~~v~P~~~l~~l~--------~~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLA--------LRQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhcc--------ccccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 6 8899999998765 2899999999999999999874321100 000112234679999999999999999
Q ss_pred CCCC---CeeeeeeeeeeEEEecCC---------CCCcHHHHHHhcCCCcccC
Q 005806 614 LRCS---HESERYENIMDLTLEIYG---------WVESLEDALTQFTSPEDLD 654 (676)
Q Consensus 614 ~~C~---~~S~~~E~F~~LSL~Ip~---------~~~SLed~L~~f~~~E~Ld 654 (676)
..|+ ..+.+.|+|++|+|+|++ ...+|.+||+.||+.|.+.
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~~~ 205 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDSLT 205 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhhhc
Confidence 9997 789999999999999986 5789999999999988743
No 15
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.8e-27 Score=257.05 Aligned_cols=160 Identities=24% Similarity=0.363 Sum_probs=137.7
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCC-----CCCchHHHHHHHHHHHHhhCC-CCCChHHHHHH
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACC-----GKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~-----~~~~~Ll~~L~~Lf~~L~~s~-~~isP~~fl~~ 548 (676)
.|.+||+|+||||||||.||||.|++.|++||+...+....+ .-...+..++..|++++.... ..+.|..|...
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 578999999999999999999999999999999866554433 234677888889999887554 88999999999
Q ss_pred HHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCc---------------------ccccccccccccceEE
Q 005806 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP---------------------RLQETTFIQHTFGGRL 607 (676)
Q Consensus 549 L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~---------------------~~~~~s~I~~iF~G~l 607 (676)
|+.++..|.++.|||.+||+.+|||.||++++....+.....| ..++.++|.++|.|..
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 9999999999999999999999999999998754433221111 1357899999999999
Q ss_pred EEEEEeCCCCCeeeeeeeeeeEEEecC
Q 005806 608 WSKVKCLRCSHESERYENIMDLTLEIY 634 (676)
Q Consensus 608 ~s~i~C~~C~~~S~~~E~F~~LSL~Ip 634 (676)
++++.|..|+.+|.+++||++|+||+|
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLP 449 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLP 449 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCc
Confidence 999999999999999999999999999
No 16
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.5e-26 Score=258.63 Aligned_cols=197 Identities=28% Similarity=0.352 Sum_probs=162.1
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC----CCCCchHHHHHHHHHHHHhhC--CCCCChHHHHHH
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC----CGKDWCLMCELEQHVMMLRES--AGPLSPGRILSH 548 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~----~~~~~~Ll~~L~~Lf~~L~~s--~~~isP~~fl~~ 548 (676)
.+.+||.|+|||||||++||||+.++.|+..++...+.... ......+..++..++..++.. ...+.|..|+..
T Consensus 299 ~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~~ 378 (653)
T KOG1868|consen 299 FGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIRV 378 (653)
T ss_pred cCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHHH
Confidence 67899999999999999999999999999877775433222 233456777888888877644 367889999999
Q ss_pred HHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCC--------C-----CCC-----------Ccccccccccccccc
Q 005806 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGG--------E-----SKV-----------DPRLQETTFIQHTFG 604 (676)
Q Consensus 549 L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~--------~-----~~~-----------~~~~~~~s~I~~iF~ 604 (676)
+..+.+.|.++.|||+|||+.++|+.||+++...... . ... +......+.|.++|.
T Consensus 379 ~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~lf~ 458 (653)
T KOG1868|consen 379 LKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDLFV 458 (653)
T ss_pred HhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHHHH
Confidence 9999999999999999999999999999998653210 0 000 001123444899999
Q ss_pred eEEEEEEEeCCCCCeeeeeeeeeeEEEecCCC-----CCcHHHHHHhcCCCcccCCCCccccccCCCcceeE
Q 005806 605 GRLWSKVKCLRCSHESERYENIMDLTLEIYGW-----VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAH 671 (676)
Q Consensus 605 G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~-----~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~ 671 (676)
|++.+.++|..|++.+.++++|++|+|+||.. .++|++||..|++.|.|+++++|.|++|+++..++
T Consensus 459 gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~ 530 (653)
T KOG1868|consen 459 GQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSK 530 (653)
T ss_pred HHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCccccc
Confidence 99999999999999999999999999999954 25599999999999999999999999999998884
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=3.3e-25 Score=227.82 Aligned_cols=114 Identities=39% Similarity=0.707 Sum_probs=104.9
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcCCCCC
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~~F~~ 558 (676)
||.|+||||||||+||+|+++|+|++++++..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999887521
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeee-eeeeeeeEEEecCCC-
Q 005806 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESE-RYENIMDLTLEIYGW- 636 (676)
Q Consensus 559 ~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~-~~E~F~~LSL~Ip~~- 636 (676)
+||||||||..||+.|+. .+.++|.|.+.+.++|..|++.+. ++|+|++|+|+||..
T Consensus 33 -~QqDa~EFl~~ll~~l~~--------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~ 91 (240)
T cd02662 33 -EQQDAHELFQVLLETLEQ--------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQS 91 (240)
T ss_pred -hhcCHHHHHHHHHHHHHH--------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccC
Confidence 899999999999999983 367899999999999999999976 499999999999975
Q ss_pred ---CCcHHHHHHhcCCCcccCCCCccccccC
Q 005806 637 ---VESLEDALTQFTSPEDLDGENMYKCARF 664 (676)
Q Consensus 637 ---~~SLed~L~~f~~~E~LdgdNky~CekC 664 (676)
..+|++||+.|+.+|.++| |.|++|
T Consensus 92 ~~~~~sl~~~L~~~~~~E~l~~---~~C~~C 119 (240)
T cd02662 92 SGSGTTLEHCLDDFLSTEIIDD---YKCDRC 119 (240)
T ss_pred CCCCCCHHHHHHHhcCcccccC---cCCCCC
Confidence 4799999999999999987 899999
No 18
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.4e-25 Score=242.50 Aligned_cols=184 Identities=20% Similarity=0.249 Sum_probs=158.8
Q ss_pred cccCCCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccC--CccCCCCCchHHHHHHHHHHHHhhC-----------C
Q 005806 471 VIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSH--SSACCGKDWCLMCELEQHVMMLRES-----------A 537 (676)
Q Consensus 471 ~~~~~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~--~~~~~~~~~~Ll~~L~~Lf~~L~~s-----------~ 537 (676)
.++ +|.+||+|+||+||||||||+|+++|.|...++...+ ...+..+..+|-|+|.+|.+.|.+. .
T Consensus 302 ~~g-pgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~q 380 (763)
T KOG0944|consen 302 LFG-PGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQ 380 (763)
T ss_pred ccC-CCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCcccc
Confidence 556 8999999999999999999999999999988876532 2334567789999999999988642 2
Q ss_pred CCCChHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCC
Q 005806 538 GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (676)
Q Consensus 538 ~~isP~~fl~~L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~ 617 (676)
..|+|..|+..+++-++.|...+||||+|||++||+.|.+-... ....+.++|.+.+..++.|..|.
T Consensus 381 ngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs-------------~~~nptd~frF~ve~Rv~C~~c~ 447 (763)
T KOG0944|consen 381 NGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRS-------------SLPNPTDLFRFEVEDRVSCLGCR 447 (763)
T ss_pred CCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccc-------------cCCCHHHHHHhhhhhhhhhhccc
Confidence 46999999999999999999999999999999999999874311 11357899999999999999999
Q ss_pred CeeeeeeeeeeEEEecCC-----CCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEE
Q 005806 618 HESERYENIMDLTLEIYG-----WVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHF 672 (676)
Q Consensus 618 ~~S~~~E~F~~LSL~Ip~-----~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K 672 (676)
.+++++++-+.|.|+||. ..+.+..||+.||.| .+++ |+|..|+.|..|+|
T Consensus 448 kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s~ac~~K~~a~k 503 (763)
T KOG0944|consen 448 KVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWSTACGEKKGATK 503 (763)
T ss_pred cccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhhHhhcCcccccc
Confidence 999999999999999984 257999999999999 5555 99999999999987
No 19
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.1e-23 Score=224.22 Aligned_cols=180 Identities=22% Similarity=0.295 Sum_probs=156.0
Q ss_pred CCCcccCCchhhHHHHHHHHHcChHHHHHHHhc--cCCccCCCCCchHHHHHHHHHHHHhhCC-----CCCChHHHHHHH
Q 005806 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRR--SHSSACCGKDWCLMCELEQHVMMLRESA-----GPLSPGRILSHM 549 (676)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~--~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~-----~~isP~~fl~~L 549 (676)
.+||.|+||+||+|||+|.|+....+...+... .+...+..+..+|.|+|.+|+..|.... ..++|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 789999999999999999999988877665443 3344556778999999999999886433 569999999999
Q ss_pred HhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeE
Q 005806 550 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (676)
Q Consensus 550 ~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~L 629 (676)
++-++.|..+.||||||||.+||+.|.+... .-..+.|.++|.+.+...+.|..|+.++..+++...+
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~------------S~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i 450 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGER------------SYLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMI 450 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccc------------hhcCCCcchhhhhhhcceecccccccccccccceEEE
Confidence 9999999999999999999999999986421 1234578899999999999999999999999999999
Q ss_pred EEecCCC--CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEE
Q 005806 630 TLEIYGW--VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHF 672 (676)
Q Consensus 630 SL~Ip~~--~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K 672 (676)
.+++.+. ..++.++++.||.+.+++ |.|+.|+.|..|.+
T Consensus 451 ~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~ 491 (749)
T COG5207 451 CIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASR 491 (749)
T ss_pred EeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccc
Confidence 9888753 578999999999999998 99999999998876
No 20
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.88 E-value=5.9e-23 Score=207.77 Aligned_cols=115 Identities=40% Similarity=0.679 Sum_probs=107.8
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcCCCCC
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~~F~~ 558 (676)
||.|.|||||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999987
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCCC--
Q 005806 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-- 636 (676)
Q Consensus 559 ~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~-- 636 (676)
.||||+||+.+||+.|+ ++|.++|+|.+.+.++|..|++.+.+.|+|+.|+|+||..
T Consensus 21 -~QqDa~Ef~~~ll~~l~--------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~ 79 (230)
T cd02674 21 -DQQDAQEFLLFLLDGLH--------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSG 79 (230)
T ss_pred -hhhhHHHHHHHHHHHHh--------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccC
Confidence 89999999999999998 2578999999999999999999999999999999999963
Q ss_pred ---CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 637 ---VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 637 ---~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
..+|+++|+.|+.+|.++|+++|.|++|++++.+.++.
T Consensus 80 ~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~ 120 (230)
T cd02674 80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKL 120 (230)
T ss_pred CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEE
Confidence 35999999999999999999999999999999988764
No 21
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.7e-23 Score=227.28 Aligned_cols=186 Identities=28% Similarity=0.369 Sum_probs=161.8
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC--CCCCchHHHHHHHHHHHHhhCC-CCCChHHHHHHHHh
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSHMRS 551 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~--~~~~~~Ll~~L~~Lf~~L~~s~-~~isP~~fl~~L~~ 551 (676)
.+.+||.|-|+|||||+++|-|.++|.++.-++...+..+. -..+..+++.++.+|..|..+. .++-|..|++.++-
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~ 172 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFRL 172 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhhc
Confidence 56799999999999999999999999999988776555211 1122349999999999997666 89999999999988
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEE
Q 005806 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTL 631 (676)
Q Consensus 552 ~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL 631 (676)
.+......+||||-||+..|||++++.+ +.++ ..-++.+.|+|....+.+|..|-|.-...|+|..|+|
T Consensus 173 ~~~pln~reqhDA~eFf~sLld~~De~L-Kklg----------~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l 241 (944)
T KOG1866|consen 173 WGEPLNLREQHDALEFFNSLLDSLDEAL-KKLG----------HPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNL 241 (944)
T ss_pred cCCccchHhhhhHHHHHHHHHHHHHHHH-HHhC----------CcHHHHHHhcCccchhhhhccCCcccCccccceeeee
Confidence 8888889999999999999999999876 3332 2336789999999999999999999999999999999
Q ss_pred ecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 632 EIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 632 ~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
+|. ..+|+++|++|.+.|.++|.|+|+|++|++|+...|+
T Consensus 242 ~i~--~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkR 281 (944)
T KOG1866|consen 242 DIR--HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKR 281 (944)
T ss_pred ecc--cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHH
Confidence 998 5799999999999999999999999999999877665
No 22
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.3e-22 Score=222.72 Aligned_cols=197 Identities=30% Similarity=0.466 Sum_probs=170.5
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCC-CchHHHHHHHHHHHHhhC--CCCCChHHHHHHHHh
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-DWCLMCELEQHVMMLRES--AGPLSPGRILSHMRS 551 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~-~~~Ll~~L~~Lf~~L~~s--~~~isP~~fl~~L~~ 551 (676)
.+++||+|+|+|||||++||+|.+.+..+...+...+....... ..|+.+++..+|+.+++. ..+++|..++..+++
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k 238 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWK 238 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHH
Confidence 57889999999999999999999999999999988888554444 789999999999999854 588999999999999
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCC--CcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeE
Q 005806 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKV--DPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDL 629 (676)
Q Consensus 552 ~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~--~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~L 629 (676)
..+.|.+++|||||||+..+++.+|.+. + ..+.... .......+++..+|.|.+.+.++|..|+..+.++++|++|
T Consensus 239 ~~~~~~g~~Qqda~eF~~~~~~~~~~~~-~-~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~di 316 (492)
T KOG1867|consen 239 HSPNLAGYEQQDAHEFLIALLDRLHREK-D-DCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDI 316 (492)
T ss_pred hCcccccccccchHHHHHHhcccccccc-c-ccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccce
Confidence 9999999999999999999999999876 1 1111100 1111457899999999999999999999999999999999
Q ss_pred EEecCCCC---------CcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 630 TLEIYGWV---------ESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 630 SL~Ip~~~---------~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
+|+||..- .++.+||+.|...|.+..+.++.|..|+.++.++|.
T Consensus 317 sL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kq 369 (492)
T KOG1867|consen 317 SLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQ 369 (492)
T ss_pred eeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccc
Confidence 99999531 569999999999999988999999999999998874
No 23
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.7e-22 Score=241.46 Aligned_cols=187 Identities=26% Similarity=0.294 Sum_probs=163.8
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCC-CCChHHHHHHHHhhc
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAG-PLSPGRILSHMRSIS 553 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~-~isP~~fl~~L~~~~ 553 (676)
.-|+||.|+||||||||+||+|++++.||+.+.+.........+...++.+|+.||..|+.+.. ++.+..+...+....
T Consensus 168 g~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~ 247 (1093)
T KOG1863|consen 168 GFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDS 247 (1093)
T ss_pred CCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhccc
Confidence 3459999999999999999999999999999998764333334556699999999999997775 999999999998765
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEec
Q 005806 554 CQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (676)
Q Consensus 554 ~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~I 633 (676)
...++|||++||++.|+|.|++.+.... ....|.++|.|.+.+.+.|..|...+.+.|.|++|.|++
T Consensus 248 --~~~~~QqDvqEf~~~l~d~LE~~~~~~~-----------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~ 314 (1093)
T KOG1863|consen 248 --NDSFEQQDVQEFLTKLLDWLEDSMIDAK-----------VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNG 314 (1093)
T ss_pred --ccHHhhhhHHHHHHHHHHHHHhhccchh-----------hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccc
Confidence 5568999999999999999998763221 244789999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEeecC
Q 005806 634 YGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFNLC 676 (676)
Q Consensus 634 p~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n~~ 676 (676)
.+ ..+|.++|..|++.|.++|||+ +|.+|...++|+|.+++
T Consensus 315 ~g-~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f 355 (1093)
T KOG1863|consen 315 KG-VKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLF 355 (1093)
T ss_pred cc-hhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceee
Confidence 98 6789999999999999999999 89999999999997653
No 24
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.3e-22 Score=222.77 Aligned_cols=188 Identities=22% Similarity=0.312 Sum_probs=160.5
Q ss_pred hcccccCCCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHH
Q 005806 468 QYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILS 547 (676)
Q Consensus 468 ~~~~~~~~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~ 547 (676)
++......|.+||+|.|.||||||+||+|+.+..||+.+....... ......+..+|+++|..|+....+++..+|.+
T Consensus 184 nYnSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~--p~grdSValaLQr~Fynlq~~~~PvdTteltr 261 (1089)
T COG5077 184 NYNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH--PRGRDSVALALQRLFYNLQTGEEPVDTTELTR 261 (1089)
T ss_pred ccccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC--CCccchHHHHHHHHHHHHhccCCCcchHHhhh
Confidence 3444444789999999999999999999999999999887643221 23446788999999999999999999999999
Q ss_pred HHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeee
Q 005806 548 HMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIM 627 (676)
Q Consensus 548 ~L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~ 627 (676)
.+++. .+..++|||.|||-+.|.|.|+..+... .-...+..+|-|++++.+.|.+-..+|.+.|.||
T Consensus 262 sfgWd--s~dsf~QHDiqEfnrVl~DnLEksmrgt-----------~VEnaln~ifVgkmksyikCvnvnyEsarvedfw 328 (1089)
T COG5077 262 SFGWD--SDDSFMQHDIQEFNRVLQDNLEKSMRGT-----------VVENALNGIFVGKMKSYIKCVNVNYESARVEDFW 328 (1089)
T ss_pred hcCcc--cchHHHHHhHHHHHHHHHHHHHHhhcCC-----------hhhhHHhHHHHHHhhceeeEEEechhhhhHHHHH
Confidence 88654 4778899999999999999998865221 1123578999999999999999999999999999
Q ss_pred eEEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEE
Q 005806 628 DLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHF 672 (676)
Q Consensus 628 ~LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K 672 (676)
+|.|++.+ ..+|+|.++.|.+.|+|+|+|+|.|++-| .++|+|
T Consensus 329 diqlNvK~-~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkK 371 (1089)
T COG5077 329 DIQLNVKG-MKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKK 371 (1089)
T ss_pred HHHhcccc-hhhHHHHHHHhhhheeccCCccccccccc-chhhcc
Confidence 99999997 78999999999999999999999999987 577776
No 25
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.83 E-value=6.5e-21 Score=193.49 Aligned_cols=147 Identities=31% Similarity=0.499 Sum_probs=115.7
Q ss_pred CCCcccCCchhhHHHHHHHHHcChHHHHHHHhcc-----CCccCCCCCchHHHHHHHHHHHHhhC---CCCCChHHHHHH
Q 005806 477 PRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS-----HSSACCGKDWCLMCELEQHVMMLRES---AGPLSPGRILSH 548 (676)
Q Consensus 477 p~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~-----~~~~~~~~~~~Ll~~L~~Lf~~L~~s---~~~isP~~fl~~ 548 (676)
|+||.|.||||||||+||+|+++|+|+++|+... ..........+++++|+.+|..|+.. ...+.|..|+..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 5899999999999999999999999999998751 11122234467999999999999976 478999999999
Q ss_pred HHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeee
Q 005806 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERY 623 (676)
Q Consensus 549 L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~ 623 (676)
+....+.|..+.||||+|||..||+.|++++.................+++.++|.|.+...+.|..|+......
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~~~~~ 155 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNSQSSI 155 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999988899999999999999999999998743211000001122356788999999999999999999885543
No 26
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.83 E-value=1.2e-20 Score=195.04 Aligned_cols=138 Identities=22% Similarity=0.295 Sum_probs=109.3
Q ss_pred cccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcCCCCCC
Q 005806 480 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGDG 559 (676)
Q Consensus 480 L~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~~F~~~ 559 (676)
|.|.||.||+|+.+|+|.+ +++.++.|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------i~~~~~~F~~~ 31 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS--------------------------------------------------IGKINTEFDND 31 (245)
T ss_pred ceecCCeeeehhHHHHHHH--------------------------------------------------HhhhhhhcCCC
Confidence 7899999999999999963 33556789999
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCCC-CC
Q 005806 560 SQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-VE 638 (676)
Q Consensus 560 ~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~-~~ 638 (676)
+||||||||++|||.|++++............ ........++|+|.+++.++|..|++++.+.|+|++|+|+|+.. ..
T Consensus 32 ~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~-~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~ 110 (245)
T cd02673 32 DQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNI-EIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLD 110 (245)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCCcc-cccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcc
Confidence 99999999999999999987543221110000 01111235789999999999999999999999999999999974 46
Q ss_pred cHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 639 SLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 639 SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
.|+++++.|+++|.++ |+|++|+++ .|.|.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~ 140 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISS 140 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceee
Confidence 7899999999888775 899999986 56553
No 27
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.4e-19 Score=202.50 Aligned_cols=148 Identities=32% Similarity=0.421 Sum_probs=114.3
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC-----------------CCCCchHHHHHHHHHHHHhhCC
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----------------CGKDWCLMCELEQHVMMLRESA 537 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~-----------------~~~~~~Ll~~L~~Lf~~L~~s~ 537 (676)
+..+||.|||||||+|||||+|+.+|.|++.|......... ..+...++.+|..+..+.....
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~k 282 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTK 282 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccC
Confidence 66789999999999999999999999999999774433110 0234567778888666666777
Q ss_pred CCCChHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCC
Q 005806 538 GPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (676)
Q Consensus 538 ~~isP~~fl~~L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~ 617 (676)
.+|.|..|+..++...|+|.++.||||||+|++|||.|..|-..... -.|...|+|...+...|..|+
T Consensus 283 sv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~k------------k~Il~~fG~~t~~l~scle~~ 350 (877)
T KOG1873|consen 283 SVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRK------------KNILSNFGGETSSLVSCLECG 350 (877)
T ss_pred CccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHH------------HhHHHhhCccccchhhhhhcc
Confidence 99999999999999999999999999999999999999776322211 125566677777667777777
Q ss_pred CeeeeeeeeeeEEEecC
Q 005806 618 HESERYENIMDLTLEIY 634 (676)
Q Consensus 618 ~~S~~~E~F~~LSL~Ip 634 (676)
+.+..|++|.+++|++|
T Consensus 351 q~sKvYe~f~~~~~~vp 367 (877)
T KOG1873|consen 351 QKSKVYEPFKDLSLPVP 367 (877)
T ss_pred chhhcccccccCCcccc
Confidence 66666777776666666
No 28
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.78 E-value=1.5e-18 Score=183.62 Aligned_cols=187 Identities=22% Similarity=0.320 Sum_probs=157.9
Q ss_pred CCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHh-hCC-CCCChHHHHHHHHhhcCC
Q 005806 478 RGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLR-ESA-GPLSPGRILSHMRSISCQ 555 (676)
Q Consensus 478 ~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~-~s~-~~isP~~fl~~L~~~~~~ 555 (676)
.||.|.+++||+||+||+|+++|++++.++... . +....||+|+|.-||++|. ... ..+.+..|+++++.....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~-c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---E-CPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---C-CCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHH
Confidence 499999999999999999999999999998866 2 5677999999999999998 554 778899999999887654
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhcCCC--CCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEec
Q 005806 556 IGDGSQEDAHEFLRLLVASMQSICLERHGGE--SKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEI 633 (676)
Q Consensus 556 F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~--~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~I 633 (676)
...+.|+|.++|++|||++|+.+++...... ..........+.|.++|+......++|..|++.+.+.+....+.|..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~y 156 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPY 156 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccC
Confidence 5567799999999999999999986543221 11112234466899999999999999999999999999999999999
Q ss_pred CC--CCCcHHHHHHhcCCCcccCCCCccccccCCCcceeE
Q 005806 634 YG--WVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAH 671 (676)
Q Consensus 634 p~--~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~ 671 (676)
|. ...++.++|+.++..|.... ..|++|++.+..+
T Consensus 157 p~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~ 193 (295)
T PF13423_consen 157 PPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTE 193 (295)
T ss_pred CCCCccchHHHHHHHHHhhccccc---cccccccccccee
Confidence 86 36899999999999999886 8999999986654
No 29
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.74 E-value=4e-18 Score=174.16 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=97.1
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcCCCCC
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~~F~~ 558 (676)
||.|.||||++|++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999975
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCCCCC
Q 005806 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVE 638 (676)
Q Consensus 559 ~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~~~ 638 (676)
.|||||||++.|||.|++++..... ...+.....++|.++|+|++.+++.| |+..+.+.|+|++|+|+|.+ ..
T Consensus 21 -~QQDa~Ef~~~Lld~Le~~l~~~~~---~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~-~~ 93 (228)
T cd02665 21 -QQQDVSEFTHLLLDWLEDAFQAAAE---AISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNG-YG 93 (228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccccc---cccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECC-CC
Confidence 7999999999999999998743211 01122245678999999999988777 78889999999999999987 58
Q ss_pred cHHHHHHhcCCCcccCCCCcccc
Q 005806 639 SLEDALTQFTSPEDLDGENMYKC 661 (676)
Q Consensus 639 SLed~L~~f~~~E~LdgdNky~C 661 (676)
+|++||+.|+.+|.+++++.++|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~~ 116 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDHS 116 (228)
T ss_pred CHHHHHHHhhhhcccccccccch
Confidence 99999999999999998654443
No 30
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.74 E-value=8.1e-18 Score=167.84 Aligned_cols=128 Identities=37% Similarity=0.508 Sum_probs=106.1
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcCCCCC
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~~F~~ 558 (676)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCCC--
Q 005806 559 GSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-- 636 (676)
Q Consensus 559 ~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~-- 636 (676)
.||||+|||..||+.|+.++...... ........+.|.++|.|.+...+.|..|+..+.....+..++|++|..
T Consensus 21 -~q~Da~E~l~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~ 96 (255)
T cd02257 21 -EQQDAHEFLLFLLDKLHEELKKSSKR---TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGL 96 (255)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccc---ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCC
Confidence 89999999999999999987543211 111123356899999999999999999998888888888888888865
Q ss_pred -CCcHHHHHHhcCCCcccCCCCccccccCC--CcceeEEe
Q 005806 637 -VESLEDALTQFTSPEDLDGENMYKCARFV--NLVEAHFF 673 (676)
Q Consensus 637 -~~SLed~L~~f~~~E~LdgdNky~CekCk--kk~~A~K~ 673 (676)
..+|+++|+.++.+|.+++ +.|..|+ +.+.+.+.
T Consensus 97 ~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~ 133 (255)
T cd02257 97 PQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKR 133 (255)
T ss_pred CCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEE
Confidence 5899999999999999997 6788887 45555443
No 31
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.4e-18 Score=187.52 Aligned_cols=159 Identities=24% Similarity=0.335 Sum_probs=131.0
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcC
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~ 554 (676)
.+.+||+|...|||+|+.+|+|+..|.|++.+... .+..+....+.+.+++..
T Consensus 85 ~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts--------------------------~~~~~et~dlt~sfgw~s- 137 (1203)
T KOG4598|consen 85 HRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS--------------------------ENDSLETKDLTQSFGWTS- 137 (1203)
T ss_pred cceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC--------------------------CcccccchhhHhhcCCCc-
Confidence 46789999999999999999999999999877521 112233444555544322
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecC
Q 005806 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (676)
Q Consensus 555 ~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip 634 (676)
-..++|||.+|+-+.++|.|+..+.. .....+|++++.|.+...+.|..|+.++.+.+.|++|+|++.
T Consensus 138 -~ea~~qhdiqelcr~mfdalehk~k~-----------t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~ 205 (1203)
T KOG4598|consen 138 -NEAYDQHDVQELCRLMFDALEHKWKG-----------TEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVK 205 (1203)
T ss_pred -chhhhhhhHHHHHHHHHHHHHhhhcC-----------chHHHHHHHHhcchHHHHHHHHHcCccccccceeeccccccc
Confidence 23478999999999999999876522 122348999999999999999999999999999999999997
Q ss_pred CC-----CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEE
Q 005806 635 GW-----VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHF 672 (676)
Q Consensus 635 ~~-----~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K 672 (676)
.- -.+++++|+.|.+||.|+|.|+|.|++|+++++|.|
T Consensus 206 pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahk 248 (1203)
T KOG4598|consen 206 PFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHK 248 (1203)
T ss_pred CCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhc
Confidence 42 369999999999999999999999999999999987
No 32
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.62 E-value=4.9e-15 Score=156.46 Aligned_cols=218 Identities=22% Similarity=0.205 Sum_probs=162.3
Q ss_pred CCCCccccccchhhcCCCCcccc-cccchhhhhhhhhcccccCChhHHhhhhh---------cccccCCCCCCcccCCch
Q 005806 417 QGSNVVSKMGIMKMMGLRKSTKL-RQDSSELWHDQHRKLKMLFPYEEFLKLFQ---------YEVIDLLSPRGLLNCGNS 486 (676)
Q Consensus 417 ~~~n~l~~~~s~k~~~L~~s~~~-~~~~~eL~~~i~~~~~~lf~~e~~~k~~~---------~~~~~~~gp~GL~NlGNT 486 (676)
.--|+++-.+-++.+.++.+..+ ..+... ++.-.++.|..++...+.. ....+++|.+||.|+-++
T Consensus 68 ghhvf~nl~telkfyvlpe~~ei~d~s~~~----ikhslkptftr~~cp~lD~~nr~~~raLd~~tYLpG~VGLnNik~~ 143 (442)
T KOG2026|consen 68 GHHVFLNLSTELKFYVLPENYEIDDPSLGD----IKHSLKPTFTKTDCPNLDKVNRKLSRALDGSTYLPGFVGLNNIKAN 143 (442)
T ss_pred cccceeccccceeEEecchhccccCchhhh----hhccccceeehhhcccccccchhhhhhhcCCcceeeeeccchhhhH
Confidence 34555555566788888876666 333333 3334445555544332221 134467899999999999
Q ss_pred hhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCC---CCCChHHHHHHHHhhc-CCCCCCCcc
Q 005806 487 CYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESA---GPLSPGRILSHMRSIS-CQIGDGSQE 562 (676)
Q Consensus 487 CYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~---~~isP~~fl~~L~~~~-~~F~~~~QQ 562 (676)
-|+|++||+|.+.+|+|+|++......+ ....++..|..+++.+|+.+ ..++|.+|++++-... ..|..++|-
T Consensus 144 dy~n~vl~~ls~v~PlRnyFl~~~n~~d---~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~ 220 (442)
T KOG2026|consen 144 DYANAVLQALSHVVPLRNYFLLEENYFD---NLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQS 220 (442)
T ss_pred HHHHHHHHHHhccchhhhhhcccccccc---hhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCC
Confidence 9999999999999999999988644222 23678899999999999876 7899999999986654 479999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCC----CCCeeeeeeeeeeEEEecCCC--
Q 005806 563 DAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLR----CSHESERYENIMDLTLEIYGW-- 636 (676)
Q Consensus 563 DAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~----C~~~S~~~E~F~~LSL~Ip~~-- 636 (676)
|+.|||.|||+.||..+... ...++||+..|+|.++...+-.. -.......-||+.|+|++|..
T Consensus 221 DpveFlswllntlhs~l~~~----------k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~pl 290 (442)
T KOG2026|consen 221 DPVEFLSWLLNTLHSDLRGS----------KKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPL 290 (442)
T ss_pred CHHHHHHHHHHHHHHHhCCC----------CCchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCCCCc
Confidence 99999999999999986221 13458999999999987766554 223355678999999999942
Q ss_pred -----------CCcHHHHHHhcCCCc
Q 005806 637 -----------VESLEDALTQFTSPE 651 (676)
Q Consensus 637 -----------~~SLed~L~~f~~~E 651 (676)
.+.|.+.|.+|....
T Consensus 291 fkD~~e~niiPQV~l~~lL~Kf~g~t 316 (442)
T KOG2026|consen 291 FKDVMEKNIIPQVALFDLLKKFDGET 316 (442)
T ss_pred ccchhhhcccccchHHHHHHHhcCce
Confidence 478999999997543
No 33
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.61 E-value=2.1e-16 Score=165.49 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=108.9
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcC
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~ 554 (676)
.+.+||.|.|.|||+||+||+|+++|+||+++. +....+....|++|+|..||. .+
T Consensus 13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~---~~~~~~~~~~~l~~el~~lfs------------~~--------- 68 (268)
T cd02672 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNFTA---IILVACPKESCLLCELGYLFS------------TL--------- 68 (268)
T ss_pred ccccccccCCccchHHHHHHHHHhcHHHHHHHH---hhcccCCcCccHHHHHHHHHH------------HH---------
Confidence 457899999999999999999999999999832 333345677999999999991 11
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecC
Q 005806 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (676)
Q Consensus 555 ~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip 634 (676)
.+-|-.+|+++|+.+... .+ ..|++.+.+.++|++|+|++|
T Consensus 69 ---------iq~F~~fll~~i~~~~~~--------------------~~----------~~C~~~s~~~~~~~~LsLpip 109 (268)
T cd02672 69 ---------IQNFTRFLLETISQDQLG--------------------TP----------FSCGTSRNSVSLLYTLSLPLG 109 (268)
T ss_pred ---------HHHHHHHHHHHHHHHhcc--------------------cC----------CCCCceeeccccceeeeeecC
Confidence 245778899998865311 01 689999999999999999999
Q ss_pred CC----CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 635 GW----VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 635 ~~----~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
.. ..+|++||+.|+++|.+ ++|+|++|++++.|+|.-
T Consensus 110 ~~~~~~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~ 150 (268)
T cd02672 110 STKTSKESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTT 150 (268)
T ss_pred ccccccCCCHHHHHHHHhhhhhc---ccccccccCcccccEEEE
Confidence 53 47999999999999965 459999999999999863
No 34
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.5e-15 Score=180.93 Aligned_cols=160 Identities=21% Similarity=0.317 Sum_probs=133.6
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC-----CCCCchHHHHHHHHHHHHhhCCC-CCChHHHHHH
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESAG-PLSPGRILSH 548 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~-----~~~~~~Ll~~L~~Lf~~L~~s~~-~isP~~fl~~ 548 (676)
.|.+||.|+|||||||+.+|+|.+.+.+++|++...+.... ......+...+..+...+|.... .+.|..+...
T Consensus 244 ~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~ 323 (842)
T KOG1870|consen 244 RGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTS 323 (842)
T ss_pred ccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhh
Confidence 67899999999999999999999999999999875444311 22345667778888889987664 7999999999
Q ss_pred HHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCC------------------CCcccccccccccccceEEEEE
Q 005806 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK------------------VDPRLQETTFIQHTFGGRLWSK 610 (676)
Q Consensus 549 L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~------------------~~~~~~~~s~I~~iF~G~l~s~ 610 (676)
+....+.|.++.|||.+|||-+|||.||+.+......... ........++|.++|.|.+++.
T Consensus 324 ~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~ 403 (842)
T KOG1870|consen 324 LASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKST 403 (842)
T ss_pred hhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceeccc
Confidence 9999999999999999999999999999998644332000 0111346789999999999999
Q ss_pred EEeCCCCCeeeeeeeeeeEEEecC
Q 005806 611 VKCLRCSHESERYENIMDLTLEIY 634 (676)
Q Consensus 611 i~C~~C~~~S~~~E~F~~LSL~Ip 634 (676)
+.|..|+.++.++++|..|+|++|
T Consensus 404 ~~c~~C~~~svt~d~f~~Lslp~p 427 (842)
T KOG1870|consen 404 LQCPTCGKVSVTFDPFGYLSLPLP 427 (842)
T ss_pred ccCccCCCceEEeeccccccccCC
Confidence 999999999999999999999999
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.5e-15 Score=171.28 Aligned_cols=198 Identities=27% Similarity=0.375 Sum_probs=153.0
Q ss_pred CCCCcccCCchhhHH--HHHHHHHcChHHHHHHHhccCCccC-CCCCchHHHHHHHHHHHHh---hCCCCCChHHHHHHH
Q 005806 476 SPRGLLNCGNSCYAN--AVLQCLTCTKPLVIYLLRRSHSSAC-CGKDWCLMCELEQHVMMLR---ESAGPLSPGRILSHM 549 (676)
Q Consensus 476 gp~GL~NlGNTCYmN--SVLQ~L~~~p~fr~~ll~~~~~~~~-~~~~~~Ll~~L~~Lf~~L~---~s~~~isP~~fl~~L 549 (676)
...|..|.+++|+.| ++.|.+..+.+++...+........ .....-++..+..++.... .....+.|..|+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~ 310 (587)
T KOG1864|consen 231 RVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDL 310 (587)
T ss_pred cccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhh
Confidence 346999999999999 9999999998888554432221110 0111223333334443322 223668999999999
Q ss_pred HhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCC-CCCC--------------------cccccccccccccceEEE
Q 005806 550 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGE-SKVD--------------------PRLQETTFIQHTFGGRLW 608 (676)
Q Consensus 550 ~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~-~~~~--------------------~~~~~~s~I~~iF~G~l~ 608 (676)
++....|..++|||||||+.++++.+++.......+. .+.. .......+++.+|.|++.
T Consensus 311 ~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~ 390 (587)
T KOG1864|consen 311 IKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILT 390 (587)
T ss_pred hhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeee
Confidence 9999999999999999999999999998765432111 1111 001246789999999999
Q ss_pred EEEEeCCCCCeeeeeeeeeeEEEecCC-CCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 609 SKVKCLRCSHESERYENIMDLTLEIYG-WVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 609 s~i~C~~C~~~S~~~E~F~~LSL~Ip~-~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
.++.|..|+..+.+.+.|.+++++++. ...++.+||+.|..+|.+.|+|+|+|++|...++|+|+
T Consensus 391 ~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~ 456 (587)
T KOG1864|consen 391 NETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERR 456 (587)
T ss_pred eeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHh
Confidence 999999999999999999999999994 47899999999999999999999999999999999875
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.6e-14 Score=149.78 Aligned_cols=194 Identities=25% Similarity=0.296 Sum_probs=131.3
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhcc-CCccCCCCCchHHHHHHHHHHHHhh------------------
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRS-HSSACCGKDWCLMCELEQHVMMLRE------------------ 535 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~-~~~~~~~~~~~Ll~~L~~Lf~~L~~------------------ 535 (676)
+.|+|+.|-||.|||||+||+|+.|+||.+.+.... ..........+++.++..++..+.+
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 679999999999999999999999999998774322 1111112334555555555544331
Q ss_pred -----------CCCCCChHHHHHHHHhhc--CCCCCCCcccHHHHHHHHHHHHHHHHHhhcCC------C-------C--
Q 005806 536 -----------SAGPLSPGRILSHMRSIS--CQIGDGSQEDAHEFLRLLVASMQSICLERHGG------E-------S-- 587 (676)
Q Consensus 536 -----------s~~~isP~~fl~~L~~~~--~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~------~-------~-- 587 (676)
....+.|..+...+.... .....|.|+||.|||.++||.||+|+.+.... + .
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~ 185 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNG 185 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccc
Confidence 112344444544443322 24466899999999999999999997532100 0 0
Q ss_pred ---CCC--------------------------cccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCC-CC
Q 005806 588 ---KVD--------------------------PRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG-WV 637 (676)
Q Consensus 588 ---~~~--------------------------~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~-~~ 637 (676)
..+ ...-..++|+++|+|++++.+.-.. .+++.+-+||..|.|+|.. ..
T Consensus 186 n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i 264 (420)
T KOG1871|consen 186 NLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKI 264 (420)
T ss_pred ccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeecccc
Confidence 000 0011367889999999999987655 5667999999999999963 36
Q ss_pred CcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 638 ESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 638 ~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
.+++++|..|...|.+.+ |.=. -+.-+.|.++
T Consensus 265 ~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q 296 (420)
T KOG1871|consen 265 HSVQDALESLVARESLPG---YSTK-SGQEVEASSQ 296 (420)
T ss_pred CCHHHHhhccChhhcccc---eecC-CCCeechhhh
Confidence 899999999999999986 4332 4444444443
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.3e-11 Score=134.31 Aligned_cols=207 Identities=19% Similarity=0.128 Sum_probs=145.7
Q ss_pred CCCCcccccccchhhhhhhhhcccccCChhHHhhhhhcccccCCCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccC
Q 005806 432 GLRKSTKLRQDSSELWHDQHRKLKMLFPYEEFLKLFQYEVIDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSH 511 (676)
Q Consensus 432 ~L~~s~~~~~~~~eL~~~i~~~~~~lf~~e~~~k~~~~~~~~~~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~ 511 (676)
.++++.+++...+.-. ++..|..+--..++..+-. ......-|+||.|+|||||||+.+|+|-..|+++..+.....
T Consensus 63 ~iKpn~~lmMmGt~e~-~~e~p~~~~~~~ed~~e~~--~~~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~ 139 (473)
T KOG1872|consen 63 QIKPNETLMMMGTAEA-GLEPPSLPPTFIEDSAEQF--ASAALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKR 139 (473)
T ss_pred ccCCCCEEEeeccccc-cccCcccCCcchhhhhHHH--HHhhccCCccccchhHHHHhhhhhhhhhcCccCcchhhccch
Confidence 4555555633332222 3444444444444443222 122235578999999999999999999999999987765432
Q ss_pred CccCC---CCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcCCCCC------CCcccHHHHHHHHHHHHHHHHHhh
Q 005806 512 SSACC---GKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD------GSQEDAHEFLRLLVASMQSICLER 582 (676)
Q Consensus 512 ~~~~~---~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~~F~~------~~QQDAhEFL~~LLd~L~ee~~~~ 582 (676)
..... .....+..+++.+|+.|..+ .++.|..++..+.+..|+|.. +.||||.|++..++-.++..+...
T Consensus 140 ~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~ 218 (473)
T KOG1872|consen 140 KRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVA 218 (473)
T ss_pred hccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccc
Confidence 22111 11356788899999999888 999999999999999998854 899999999999999998754211
Q ss_pred cCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeee--eeeeeeEEEecCCCCCcHHHHHHhcCC
Q 005806 583 HGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESER--YENIMDLTLEIYGWVESLEDALTQFTS 649 (676)
Q Consensus 583 l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~--~E~F~~LSL~Ip~~~~SLed~L~~f~~ 649 (676)
.. . .....++..+|++.+..+..|..-...... .|.|+.|++.|......+...|+.=++
T Consensus 219 ~~------~-~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~ 280 (473)
T KOG1872|consen 219 TE------A-PCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLS 280 (473)
T ss_pred cc------c-cchhHHHHHhhccccccceeeccCcccccccccccccccceEEeeeechhhhhhhhhhh
Confidence 10 0 134567889999999999999887666444 799999999998766666666655443
No 38
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.89 E-value=5.8e-10 Score=82.13 Aligned_cols=37 Identities=62% Similarity=1.218 Sum_probs=34.1
Q ss_pred ccccCCccccccCCCCcceecChhHhhHhhHHHhHHhc
Q 005806 103 CARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQEC 140 (676)
Q Consensus 103 C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C 140 (676)
|..|+++++.+|++|+.++|||++||++||. .||.+|
T Consensus 1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~-~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKSVYYCSEECQRADWP-YHKFEC 37 (37)
T ss_dssp -TTTSSCSSEEETTTSSSEESSHHHHHHHHH-HHCCTH
T ss_pred CcCCCCCcCCcCCCCCCEEecCHHHHHHHHH-HHhhhC
Confidence 7899998888999999999999999999997 999887
No 39
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.65 E-value=5e-09 Score=107.97 Aligned_cols=43 Identities=49% Similarity=1.127 Sum_probs=39.7
Q ss_pred CccccccCCc-cccccCCCCcceecChhHhhHhhHHHhHHhchhh
Q 005806 100 FQLCARCFAP-ATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQL 143 (676)
Q Consensus 100 ~~~C~~C~~~-~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~ 143 (676)
...|..||.+ +.+||+.||.+.||+++||+.||. .||++|..+
T Consensus 319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf-~HKK~C~~L 362 (396)
T KOG1710|consen 319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWF-IHKKVCSFL 362 (396)
T ss_pred cccccccCCCCccchhhhhHHHHHHHHHHHHhhhH-HHHHHHHHH
Confidence 4689999964 789999999999999999999999 999999987
No 40
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.44 E-value=1.6e-07 Score=108.58 Aligned_cols=186 Identities=21% Similarity=0.353 Sum_probs=120.9
Q ss_pred CCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhC-CCCCChHHHHHHHHhhcC
Q 005806 476 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRES-AGPLSPGRILSHMRSISC 554 (676)
Q Consensus 476 gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s-~~~isP~~fl~~L~~~~~ 554 (676)
.+.||.-.+-.-|.|++||.|+++|+||..+++. .|....||+|+|.-||.+|..+ +.+.....|+++++....
T Consensus 498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H-----~C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t~~~ 572 (1118)
T KOG1275|consen 498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH-----ICTKEFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRTNPE 572 (1118)
T ss_pred eeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC-----ccchhHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhhChH
Confidence 3578988898999999999999999999999986 3566799999999999999754 478899999999976533
Q ss_pred C--CC---CCC-----------cccHHHHHHHHHHHHHHHHHh--hcCCCCCCCcc---cccccccccccceEEEEEEEe
Q 005806 555 Q--IG---DGS-----------QEDAHEFLRLLVASMQSICLE--RHGGESKVDPR---LQETTFIQHTFGGRLWSKVKC 613 (676)
Q Consensus 555 ~--F~---~~~-----------QQDAhEFL~~LLd~L~ee~~~--~l~~~~~~~~~---~~~~s~I~~iF~G~l~s~i~C 613 (676)
. +. ... -|||.-|.....+...+ +.+ .+......+.. ......+.+.|+-.++....|
T Consensus 573 a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d-~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~C 651 (1118)
T KOG1275|consen 573 ASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLD-CQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSLRC 651 (1118)
T ss_pred hhhhcccccchhhccccchHHHhhhhhhccchhhhhhhh-HHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhhhc
Confidence 1 10 111 23344333322222111 100 00000111111 223457899999999999999
Q ss_pred CCCCCeeeeeeeeeeEEEecCCC--------CCcHHHHHHhcCCCcccCCCCccccccCCCccee
Q 005806 614 LRCSHESERYENIMDLTLEIYGW--------VESLEDALTQFTSPEDLDGENMYKCARFVNLVEA 670 (676)
Q Consensus 614 ~~C~~~S~~~E~F~~LSL~Ip~~--------~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A 670 (676)
..|++.+.+......+.|..|+. .....+.|+.- +.+....+-.|+.|++.+..
T Consensus 652 g~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~---l~l~kn~~~~C~~C~k~ep~ 713 (1118)
T KOG1275|consen 652 GECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRS---LSLFKNKQAWCETCTKPEPT 713 (1118)
T ss_pred ccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhh---hhcccccccccccccCCCCc
Confidence 99999988777788888888852 12233333322 12222223579999987643
No 41
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.10 E-value=3.5e-06 Score=87.36 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCC--CC
Q 005806 560 SQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYG--WV 637 (676)
Q Consensus 560 ~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~--~~ 637 (676)
+|||+.|||.+|+++|..-++. +.-++|.|-....-. + +...|.|+.|+++.+. ..
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~----------------~~~~~~~~g~~~~~~-----~-~~~~e~~l~l~ip~~~~~~~ 79 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLE----------------PKVDIIHGGKKDQDD-----D-KLVNERLLQIPVPDDDDGGG 79 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhh----------------HHHHHHhcCcccccc-----c-cccccceEEeecccCCCCCc
Confidence 7999999999999998764321 234566552211100 0 3345777777776653 36
Q ss_pred CcHHHHHHhcCCCccc
Q 005806 638 ESLEDALTQFTSPEDL 653 (676)
Q Consensus 638 ~SLed~L~~f~~~E~L 653 (676)
.+|++||+.|++.|.|
T Consensus 80 ~tLedcLe~~~~~e~i 95 (241)
T cd02670 80 ITLEQCLEQYFNNSVF 95 (241)
T ss_pred CCHHHHHHHHhchhhh
Confidence 8999999999999975
No 42
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00033 Score=81.07 Aligned_cols=100 Identities=23% Similarity=0.326 Sum_probs=59.4
Q ss_pred cccCCchhhHHHHHHHHHcChHHHHHHHhcc---CCc-----cCCCCCchHHHHHHHHHHHHh---hC-----CCCCChH
Q 005806 480 LLNCGNSCYANAVLQCLTCTKPLVIYLLRRS---HSS-----ACCGKDWCLMCELEQHVMMLR---ES-----AGPLSPG 543 (676)
Q Consensus 480 L~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~---~~~-----~~~~~~~~Ll~~L~~Lf~~L~---~s-----~~~isP~ 543 (676)
|+|.||+||.|++||+|..+|+|+.-+.... ... +.........+....+...+. .. ...++-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999997664421 110 000111111222222221111 11 1112333
Q ss_pred HHHHHHHhh---cCCCCCCCcccHHHHHHHHHHHHHHHH
Q 005806 544 RILSHMRSI---SCQIGDGSQEDAHEFLRLLVASMQSIC 579 (676)
Q Consensus 544 ~fl~~L~~~---~~~F~~~~QQDAhEFL~~LLd~L~ee~ 579 (676)
.+...+... ...|....|+|||+|+.-|+-.+.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 444444332 346888999999999999998887764
No 43
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.82 E-value=0.00048 Score=76.97 Aligned_cols=44 Identities=34% Similarity=0.840 Sum_probs=39.5
Q ss_pred CccccccCCccccccCCCCcceecChhHhhHhhHHHhHHhchhhhhc
Q 005806 100 FQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKT 146 (676)
Q Consensus 100 ~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~~ 146 (676)
+.=|++|...+...| |-...||+.+||..||+ .|++.|+.-...
T Consensus 527 KQWC~nC~~EAiy~C--CWNTSYCsveCQQ~HW~-~H~ksCrrk~~~ 570 (588)
T KOG3612|consen 527 KQWCYNCLDEAIYHC--CWNTSYCSVECQQGHWP-EHRKSCRRKKTN 570 (588)
T ss_pred HHHHHhhhHHHHHHh--hccccccCcchhhccch-hHhhhhcccCCC
Confidence 347999999999998 88899999999999999 999999986544
No 44
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=92.79 E-value=0.067 Score=58.11 Aligned_cols=50 Identities=38% Similarity=0.787 Sum_probs=43.5
Q ss_pred CCccccccCCccccccCCCCcceecChhHhhHhhHHHhHHhchhhhhccC
Q 005806 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSS 148 (676)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~~~~ 148 (676)
+...|..|+..+...|..|+.+.|||..+|..||...|+..|...+....
T Consensus 135 ~~~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~ 184 (362)
T KOG2061|consen 135 GADLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGE 184 (362)
T ss_pred ccchhccCcccCcccccccchhhhcCchhhcccccccccccccCcccccc
Confidence 45789999988999999999999999999999999779999987654443
No 45
>PLN03158 methionine aminopeptidase; Provisional
Probab=92.33 E-value=0.12 Score=57.77 Aligned_cols=41 Identities=34% Similarity=0.792 Sum_probs=34.9
Q ss_pred CCccccccCCccccccCCCCc-------ceecChhHhhHhhHHHhHHhc
Q 005806 99 GFQLCARCFAPATTRCSRCKS-------VRYCSGKCQIIHWRQVHKQEC 140 (676)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~-------v~YCs~~CQ~~dW~~~Hk~~C 140 (676)
....|..|++++.+.|-.|.. .++||.+|=+..|+ .||..=
T Consensus 8 ~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 55 (396)
T PLN03158 8 SPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWS-SHKSVH 55 (396)
T ss_pred CcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHH-HHHHHH
Confidence 345799999998899988853 78999999999999 888764
No 46
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=91.03 E-value=0.29 Score=39.37 Aligned_cols=44 Identities=25% Similarity=0.539 Sum_probs=36.7
Q ss_pred cccccCC----ccccccCCCCcceecChhHhhHhhHHHhHHhchhhhhc
Q 005806 102 LCARCFA----PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKT 146 (676)
Q Consensus 102 ~C~~C~~----~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~~ 146 (676)
.|..|+. .-...|..|....|||++.=..|.+ .|++.|..+.+.
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e-~H~~~c~~LRqv 48 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYE-EHRQLCERLRQV 48 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHH-HHHHHHHHHHHh
Confidence 3677776 4557899999999999998888888 899999998764
No 47
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=0.1 Score=59.96 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=35.3
Q ss_pred CCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 636 WVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 636 ~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
..++|+|||..|.++|.|.-...|+|+.|+....|+|.
T Consensus 673 rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKq 710 (823)
T COG5560 673 RTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQ 710 (823)
T ss_pred CCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhh
Confidence 36899999999999999999999999999999999884
No 48
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=85.81 E-value=0.22 Score=60.82 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=34.9
Q ss_pred CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 637 VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 637 ~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
..+|++||+.|+.+|.|..+++|+|++|++.+.|+|.
T Consensus 695 ~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk 731 (842)
T KOG1870|consen 695 PNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKK 731 (842)
T ss_pred cccHHHHHHhhcchhcCCccccccChHHHHHHHHhhh
Confidence 5899999999999999999999999999999999873
No 49
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=83.80 E-value=0.46 Score=55.79 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=28.8
Q ss_pred CCcHHHHHHhcCCCcccCCCCccccccCCC
Q 005806 637 VESLEDALTQFTSPEDLDGENMYKCARFVN 666 (676)
Q Consensus 637 ~~SLed~L~~f~~~E~LdgdNky~CekCkk 666 (676)
..+|+.||.+|++-|.|.|+|+|.|+.|-+
T Consensus 677 p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk 706 (877)
T KOG1873|consen 677 PCSVQRCLKNFTKVEILSGDNKWACENCTK 706 (877)
T ss_pred CccHHHHHHhhhhhhhcccccchhhhhhhc
Confidence 689999999999999999999999999976
No 50
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=79.35 E-value=1.1 Score=44.47 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=16.2
Q ss_pred CCCCCcccCCchhhHHHHHHHHHc
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTC 498 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~ 498 (676)
..+.|+.|.+|+|++||++|.+..
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 345699999999999999998754
No 51
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=78.65 E-value=4.1 Score=42.73 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=25.1
Q ss_pred ccCCchhhHHHHHHHHHcChHHHHHHHh
Q 005806 481 LNCGNSCYANAVLQCLTCTKPLVIYLLR 508 (676)
Q Consensus 481 ~NlGNTCYmNSVLQ~L~~~p~fr~~ll~ 508 (676)
.|.-|-|++-++|-+|.|+..+++.+-.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~ 33 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTE 33 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 5888999999999999999999988754
No 52
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=78.16 E-value=1.3 Score=31.31 Aligned_cols=28 Identities=50% Similarity=1.096 Sum_probs=21.7
Q ss_pred ccccccCCccccccCCCCcceecChhHhh
Q 005806 101 QLCARCFAPATTRCSRCKSVRYCSGKCQI 129 (676)
Q Consensus 101 ~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~ 129 (676)
..|..|+..+.-+|.+|.. .|||.+|-+
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~-~~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGA-RYCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT---EESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCC-ceeCcEeEC
Confidence 4799999988899999996 599999963
No 53
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=75.82 E-value=1.5 Score=41.94 Aligned_cols=35 Identities=29% Similarity=0.626 Sum_probs=30.0
Q ss_pred CCCccccccCCccccccCCCCcceecChhHhhHhhH
Q 005806 98 NGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWR 133 (676)
Q Consensus 98 ~~~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~ 133 (676)
+..+.|+.||-...-.|..|.. +||+..|-..|-.
T Consensus 116 P~r~fCaVCG~~S~ysC~~CG~-kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 116 PLRKFCAVCGYDSKYSCVNCGT-KYCSVRCLKTHNE 150 (156)
T ss_pred CcchhhhhcCCCchhHHHhcCC-ceeechhhhhccc
Confidence 4457999999888999999995 7999999987764
No 54
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=72.74 E-value=6.3 Score=42.91 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=41.2
Q ss_pred CCCCcccCCchhhHHHHHHHHHcChH-HHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcC
Q 005806 476 SPRGLLNCGNSCYANAVLQCLTCTKP-LVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (676)
Q Consensus 476 gp~GL~NlGNTCYmNSVLQ~L~~~p~-fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~ 554 (676)
|.+=|.=.-|.||+||++=.|-++.. |+ .+ .+..++..+... .|..|...+-. ..
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~----------------~~---~l~~aw~~f~~G----~~~~fVa~~Ya-~~ 156 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKFK----------------SP---GLDEAWNEFKAG----DPAPFVAWCYA-ST 156 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--BS----------------SH---HHHHHHHHHHTT------HHHHHHHHH-HT
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCccC----------------CH---HHHHHHHHHhCC----ChHHHHHHHHH-Hc
Confidence 34445555799999999877754321 11 11 233343433332 56777776643 23
Q ss_pred CCCCCCcccHHHHHHHHHHHHHH
Q 005806 555 QIGDGSQEDAHEFLRLLVASMQS 577 (676)
Q Consensus 555 ~F~~~~QQDAhEFL~~LLd~L~e 577 (676)
.+..|+--||+++|..||+.++.
T Consensus 157 ~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 157 NAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp T--TTS---HHHHHHHHHTTB-T
T ss_pred CCCCCCCcCHHHHHHHHHHhccc
Confidence 56678999999999999977653
No 55
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=68.71 E-value=2.4 Score=40.37 Aligned_cols=37 Identities=32% Similarity=0.991 Sum_probs=29.1
Q ss_pred CccccccCCc-cccccCCCCcceecChhHhhHhhHHHhHH--hchh
Q 005806 100 FQLCARCFAP-ATTRCSRCKSVRYCSGKCQIIHWRQVHKQ--ECQQ 142 (676)
Q Consensus 100 ~~~C~~C~~~-~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~--~C~~ 142 (676)
...|.-|.+. -..+|..|. |.|||-.| |+ .||. .|..
T Consensus 5 t~tC~ic~e~~~KYKCpkC~-vPYCSl~C----fK-iHk~tPq~~~ 44 (157)
T KOG2857|consen 5 TTTCVICLESEIKYKCPKCS-VPYCSLPC----FK-IHKSTPQCET 44 (157)
T ss_pred eeeehhhhcchhhccCCCCC-Cccccchh----hh-hccCCccccc
Confidence 3578888875 478999998 57999999 88 8888 4544
No 56
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=54.75 E-value=12 Score=42.66 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=19.6
Q ss_pred CCCCcccCCchhhHHHHHHHHHcC
Q 005806 476 SPRGLLNCGNSCYANAVLQCLTCT 499 (676)
Q Consensus 476 gp~GL~NlGNTCYmNSVLQ~L~~~ 499 (676)
...|++-.-|.||+||.|=+++.-
T Consensus 367 k~kgiqgh~nscyldstlf~~f~f 390 (724)
T KOG3556|consen 367 KIKGIQGHPNSCYLDSTLFKPFEF 390 (724)
T ss_pred ccccccCCcchhhccccccccccc
Confidence 346888888999999999888754
No 57
>PRK01343 zinc-binding protein; Provisional
Probab=54.19 E-value=13 Score=30.31 Aligned_cols=29 Identities=28% Similarity=0.693 Sum_probs=22.3
Q ss_pred CccccccCCccccccCCCCcceecChhHhhHhhH
Q 005806 100 FQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWR 133 (676)
Q Consensus 100 ~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~ 133 (676)
...|..|+++... ....|||+.|+..|--
T Consensus 9 ~~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg 37 (57)
T PRK01343 9 TRPCPECGKPSTR-----EAYPFCSERCRDIDLN 37 (57)
T ss_pred CCcCCCCCCcCcC-----CCCcccCHHHhhhhHH
Confidence 3689999987542 3568999999998743
No 58
>PF14353 CpXC: CpXC protein
Probab=53.74 E-value=11 Score=35.13 Aligned_cols=49 Identities=18% Similarity=0.355 Sum_probs=26.4
Q ss_pred EEEeCCCCCeeeeeeeeeeEEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcce
Q 005806 610 KVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVE 669 (676)
Q Consensus 610 ~i~C~~C~~~S~~~E~F~~LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~ 669 (676)
+++|..|++.... +.+..+..... ..|.+.| +.. .+ +.|.|++||....
T Consensus 1 ~itCP~C~~~~~~-~v~~~I~~~~~---p~l~e~i---l~g-~l---~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEF-EVWTSINADED---PELKEKI---LDG-SL---FSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEE-EEEeEEcCcCC---HHHHHHH---HcC-Cc---CEEECCCCCCcee
Confidence 3789999988643 22222222221 2333333 222 22 3599999998764
No 59
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.18 E-value=7.3 Score=43.08 Aligned_cols=179 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHH-----hh--CC-----CCCCh
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMML-----RE--SA-----GPLSP 542 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L-----~~--s~-----~~isP 542 (676)
..|+|+.|.||-|+.++..|.+.+..++...+-..... ............+.++|... +. .+ .++-|
T Consensus 176 ~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~-~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~t 254 (420)
T KOG1871|consen 176 FTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKT-DIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFT 254 (420)
T ss_pred ccccccccccccccccchhhcccccCchhhhcCCcccC-ccCCCCCcccCcHHHhhccccccceeccccccccccCccce
Confidence 67899999999999999999999999988765332211 11111111112223333211 10 00 11111
Q ss_pred H----------HHHHHHHhh-----cCC--------CCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCccc---ccc
Q 005806 543 G----------RILSHMRSI-----SCQ--------IGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRL---QET 596 (676)
Q Consensus 543 ~----------~fl~~L~~~-----~~~--------F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~---~~~ 596 (676)
. ....++... .+. .....|.|+.+|...|+.+|+....+..++-.+..... ...
T Consensus 255 lqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l 334 (420)
T KOG1871|consen 255 LQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTL 334 (420)
T ss_pred eeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhcccee
Confidence 1 111122111 111 22347899999999999999998765444322221110 001
Q ss_pred cccc-----------cccceEEEEEEEeCCCCCeeeeeeeeeeEEEecC-CCCCcHHHHHHhcCCCcccCC
Q 005806 597 TFIQ-----------HTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY-GWVESLEDALTQFTSPEDLDG 655 (676)
Q Consensus 597 s~I~-----------~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip-~~~~SLed~L~~f~~~E~Ldg 655 (676)
.+.. -+|++.+++...-.. ...+.+..+++...+++. +.-..++|.+-.+...+.+.+
T Consensus 335 ~i~~~~~s~gvk~~~~~~~~~yks~~vvyh-tgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~ 404 (420)
T KOG1871|consen 335 KISKNCFSQGLKIRILIATRPYKSLAVVYH-TGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEK 404 (420)
T ss_pred eechhhhccccchhhhccccccceEEEEEe-cccccccCceEEeeeecccCceeEeccceeeeccHhhhcc
Confidence 1111 455665555544332 233556677777777765 224577888888887777664
No 60
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=45.99 E-value=19 Score=29.54 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=23.1
Q ss_pred CccccccCCccccccCCCCcceecChhHhhHhhHHHhHH
Q 005806 100 FQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQ 138 (676)
Q Consensus 100 ~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~ 138 (676)
.+.|.+||++-.. .-.|||.+|+...++ .+|+
T Consensus 3 HkHC~~CG~~Ip~------~~~fCS~~C~~~~~k-~qk~ 34 (59)
T PF09889_consen 3 HKHCPVCGKPIPP------DESFCSPKCREEYRK-RQKR 34 (59)
T ss_pred CCcCCcCCCcCCc------chhhhCHHHHHHHHH-HHHH
Confidence 3589999975332 256999999987777 5554
No 61
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=33.78 E-value=16 Score=39.33 Aligned_cols=36 Identities=39% Similarity=0.842 Sum_probs=28.3
Q ss_pred ccccccCC-ccccccCCCCcceecChhHhhHhhHHHhHHhchh
Q 005806 101 QLCARCFA-PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQ 142 (676)
Q Consensus 101 ~~C~~C~~-~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~ 142 (676)
-.|..|+. ....+|.||.. .||+-.|- + .|+..|..
T Consensus 8 ~~C~ic~vq~~~YtCPRCn~-~YCsl~CY----r-~h~~~CsE 44 (383)
T KOG4317|consen 8 LACGICGVQKREYTCPRCNL-LYCSLKCY----R-NHKHSCSE 44 (383)
T ss_pred eeccccccccccccCCCCCc-cceeeeee----c-CCCccchH
Confidence 47888886 35589999995 69999995 5 78877854
No 62
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=32.77 E-value=22 Score=38.20 Aligned_cols=41 Identities=27% Similarity=0.634 Sum_probs=33.3
Q ss_pred Cccc--cccCCccccccCCCC-----cceecChhHhhHhhHHHhHHhch
Q 005806 100 FQLC--ARCFAPATTRCSRCK-----SVRYCSGKCQIIHWRQVHKQECQ 141 (676)
Q Consensus 100 ~~~C--~~C~~~~~~~Cs~Ck-----~v~YCs~~CQ~~dW~~~Hk~~C~ 141 (676)
...| ..|++++.+.|..|- ..++|+.+|-+.-|. .||..=.
T Consensus 6 ~~~c~~~~c~~~a~l~Cp~c~~~~i~~~~fc~q~cf~~~w~-~hK~~h~ 53 (369)
T KOG2738|consen 6 KISCEGLQCGSEASLQCPTCLKLGIKSAYFCAQECFKNSWL-SHKKLHR 53 (369)
T ss_pred hceeeccccCChhhccCchhhhcCCCcccccCchhhhcchh-hhhhhcc
Confidence 3577 778888888888873 457999999999999 9988654
No 63
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=32.48 E-value=34 Score=40.55 Aligned_cols=39 Identities=36% Similarity=0.628 Sum_probs=29.9
Q ss_pred ccccccC----CccccccCCCC-------cceecChhHhhHhhHHHhHHhc
Q 005806 101 QLCARCF----APATTRCSRCK-------SVRYCSGKCQIIHWRQVHKQEC 140 (676)
Q Consensus 101 ~~C~~C~----~~~~~~Cs~Ck-------~v~YCs~~CQ~~dW~~~Hk~~C 140 (676)
..|+.|. +++.+.|-.|. ..++|+.+|=+..|+ .||..=
T Consensus 60 ~~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 109 (606)
T PLN03144 60 RKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWR-HHRVLH 109 (606)
T ss_pred ccceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHH-HHHHHH
Confidence 4566775 56667777774 267999999999999 998764
No 64
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=30.85 E-value=25 Score=27.03 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=21.0
Q ss_pred ccccccCCccccccCCCCcceecChhHhhHhhH
Q 005806 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWR 133 (676)
Q Consensus 101 ~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~ 133 (676)
..|..|.+.-.. ..-..-|||.+|+.+|+.
T Consensus 7 ~yC~~Cdk~~~~---~~~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 7 DYCIVCDKQIDP---PDDGSLYCSEECRLKDQE 36 (43)
T ss_pred hHHHHhhccccC---CCCCccccCHHHHhHhhh
Confidence 467777753211 334566999999999997
No 65
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=27.88 E-value=48 Score=27.99 Aligned_cols=18 Identities=50% Similarity=0.827 Sum_probs=14.6
Q ss_pred hhhHHHHhhhHHHHHHhc
Q 005806 11 VLFLVLVVLPLVAYVLLG 28 (676)
Q Consensus 11 ~~~~~~~~~p~~~~~~~g 28 (676)
++.||||++|++-+++.+
T Consensus 50 ~~AlvLv~ip~~l~~~~~ 67 (67)
T PRK13275 50 LLALLLVVVPPLLYGLVG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 467789999999988764
No 66
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.03 E-value=21 Score=27.26 Aligned_cols=29 Identities=38% Similarity=1.015 Sum_probs=20.3
Q ss_pred ccccccCCccc--cccCCC-CcceecChhHhh
Q 005806 101 QLCARCFAPAT--TRCSRC-KSVRYCSGKCQI 129 (676)
Q Consensus 101 ~~C~~C~~~~~--~~Cs~C-k~v~YCs~~CQ~ 129 (676)
..|..|+.+-. +.-.+| -.|.|||..|..
T Consensus 9 K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 9 KICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 58999997533 334445 368899999974
No 67
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=23.35 E-value=76 Score=25.71 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=7.8
Q ss_pred cccccCCCcc
Q 005806 659 YKCARFVNLV 668 (676)
Q Consensus 659 y~CekCkkk~ 668 (676)
++|++|++.+
T Consensus 29 lyCpKCK~Et 38 (55)
T PF14205_consen 29 LYCPKCKQET 38 (55)
T ss_pred ccCCCCCceE
Confidence 6899998754
No 68
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.03 E-value=1.6e+02 Score=27.95 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=27.3
Q ss_pred EEEEEEEeCCCCCeeeeee-eeeeEEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCc
Q 005806 606 RLWSKVKCLRCSHESERYE-NIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNL 667 (676)
Q Consensus 606 ~l~s~i~C~~C~~~S~~~E-~F~~LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk 667 (676)
...-...|..||+.....+ ++. | ++ .+.. .-.+-||.+.. -+.|+.|+..
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~-~----~~---~~~~--~~~~~~~~~~~--~~~CP~Cgs~ 116 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKES-L----DE---EIRE--AIHFIPEVVHA--FLKCPKCGSR 116 (135)
T ss_pred ecceEEECCCCCCEEeccccccc-c----cc---cccc--ccccccccccc--CcCCcCCCCC
Confidence 4456789999997754321 111 0 11 1111 12355665553 2679999975
No 69
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.51 E-value=49 Score=24.32 Aligned_cols=21 Identities=29% Similarity=0.732 Sum_probs=14.7
Q ss_pred cccccCC------------ccccccCCCCccee
Q 005806 102 LCARCFA------------PATTRCSRCKSVRY 122 (676)
Q Consensus 102 ~C~~C~~------------~~~~~Cs~Ck~v~Y 122 (676)
.|.+|+. ....+|++|+.+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 6888872 23468999988763
No 70
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=21.47 E-value=62 Score=27.12 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=12.6
Q ss_pred hhhHHHHhhhHHHHHH
Q 005806 11 VLFLVLVVLPLVAYVL 26 (676)
Q Consensus 11 ~~~~~~~~~p~~~~~~ 26 (676)
++.|+||++|++.++|
T Consensus 50 ~~Al~lV~IP~ll~~l 65 (65)
T TIGR02507 50 LFAVLLVAVPIAMKFL 65 (65)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4567799999998764
No 71
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.25 E-value=54 Score=24.03 Aligned_cols=21 Identities=38% Similarity=0.898 Sum_probs=14.4
Q ss_pred cccccCC------------ccccccCCCCccee
Q 005806 102 LCARCFA------------PATTRCSRCKSVRY 122 (676)
Q Consensus 102 ~C~~C~~------------~~~~~Cs~Ck~v~Y 122 (676)
.|.+|+. ....+|++|..+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 5778873 23368999987764
Done!