Query 005806
Match_columns 676
No_of_seqs 568 out of 2481
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 5.2E-37 1.8E-41 330.2 18.0 200 475-674 6-247 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 3.2E-36 1.1E-40 319.2 17.6 200 475-674 7-232 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 3.1E-36 1.1E-40 328.7 15.7 199 475-673 60-283 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 4.2E-36 1.4E-40 319.1 16.1 199 476-674 2-242 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 9.8E-34 3.3E-38 304.2 20.0 182 475-673 4-185 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 3.8E-33 1.3E-37 303.0 14.1 195 475-674 12-225 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 1.7E-32 6E-37 305.2 16.8 198 475-674 139-354 (476)
8 2f1z_A Ubiquitin carboxyl-term 100.0 6E-32 2.1E-36 304.8 17.6 185 472-673 170-354 (522)
9 1vjv_A Ubiquitin carboxyl-term 100.0 3.6E-32 1.2E-36 297.4 14.4 179 475-674 22-217 (415)
10 3ihp_A Ubiquitin carboxyl-term 100.0 1E-31 3.4E-36 318.4 16.2 183 475-674 342-579 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.5 3E-15 1E-19 159.8 4.7 101 475-577 7-113 (374)
12 2d8q_A BLU protein, zinc finge 99.1 5.9E-11 2E-15 98.6 5.6 48 99-147 14-61 (70)
13 2odd_A Protein CBFA2T1; MYND z 99.0 9E-11 3.1E-15 95.7 2.9 45 99-144 16-60 (64)
14 2dj8_A Protein CBFA2T1; zinc f 99.0 1.8E-10 6E-15 92.8 3.7 45 99-144 14-58 (60)
15 2od1_A Protein CBFA2T1; zinc f 99.0 1.4E-10 4.8E-15 93.4 2.8 45 99-144 12-56 (60)
16 2jw6_A Deformed epidermal auto 98.9 3.7E-10 1.2E-14 88.1 2.6 43 99-142 8-50 (52)
17 3qwp_A SET and MYND domain-con 98.3 2E-07 7E-12 102.5 4.3 50 98-148 45-96 (429)
18 3qww_A SET and MYND domain-con 98.3 1.8E-07 6.2E-12 103.1 3.4 50 97-147 46-97 (433)
19 3n71_A Histone lysine methyltr 98.2 5.2E-07 1.8E-11 101.0 4.3 75 69-147 21-97 (490)
20 2yqq_A Zinc finger HIT domain- 94.2 0.045 1.6E-06 43.1 4.2 39 98-142 10-48 (56)
21 1x4s_A Protein FON, zinc finge 86.0 0.43 1.5E-05 37.9 2.7 30 101-131 12-45 (59)
22 2fe8_A PP1AB, ORF1AB, replicas 73.4 6.2 0.00021 41.3 7.2 75 476-574 101-176 (315)
23 3mp2_A Non-structural protein 58.0 6.4 0.00022 38.9 3.5 67 479-573 15-81 (211)
24 1qmy_A Protease, leader protea 48.6 8.4 0.00029 35.7 2.3 24 476-499 12-35 (167)
25 1lv3_A Hypothetical protein YA 38.3 14 0.00048 30.0 1.9 32 101-133 10-41 (68)
26 1qyp_A RNA polymerase II; tran 30.5 21 0.00072 27.5 1.7 48 600-667 5-52 (57)
27 3a43_A HYPD, hydrogenase nicke 29.3 23 0.00077 32.5 2.0 52 606-668 66-117 (139)
28 1x4w_A Hypothetical protein FL 23.5 47 0.0016 26.8 2.6 26 98-125 13-44 (67)
29 2l8e_A Polyhomeotic-like prote 20.7 40 0.0014 25.6 1.5 31 99-130 17-47 (49)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.2e-37 Score=330.20 Aligned_cols=200 Identities=24% Similarity=0.334 Sum_probs=168.0
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC-----CCCCchHHHHHHHHHHHHhhCC-CCCChHHHHHH
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~-----~~~~~~Ll~~L~~Lf~~L~~s~-~~isP~~fl~~ 548 (676)
.|++||.|+|||||||||||+|+++|+|+++|+...+.... .....+++.+|..||..||... ..++|..|+..
T Consensus 6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~ 85 (367)
T 2y6e_A 6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQ 85 (367)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHH
T ss_pred CCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHHH
Confidence 78899999999999999999999999999999976543222 1224579999999999999654 78999999999
Q ss_pred HHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCC--CC----c------------ccccccccccccceEEEEE
Q 005806 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK--VD----P------------RLQETTFIQHTFGGRLWSK 610 (676)
Q Consensus 549 L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~--~~----~------------~~~~~s~I~~iF~G~l~s~ 610 (676)
++...+.|.+++||||||||.+|||.||+++......... .+ + .....++|.++|+|+++++
T Consensus 86 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~ 165 (367)
T 2y6e_A 86 VGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKST 165 (367)
T ss_dssp HHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEeee
Confidence 9999999999999999999999999999987432111000 00 0 0124678999999999999
Q ss_pred EEeCCCCCeeeeeeeeeeEEEecCCC------------------CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEE
Q 005806 611 VKCLRCSHESERYENIMDLTLEIYGW------------------VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHF 672 (676)
Q Consensus 611 i~C~~C~~~S~~~E~F~~LSL~Ip~~------------------~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K 672 (676)
++|..|++++.++|+|++|+|+||.. ..+|++||+.|+++|.|+++|+|+|++|+++++|+|
T Consensus 166 ~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K 245 (367)
T 2y6e_A 166 LVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATK 245 (367)
T ss_dssp EECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEE
T ss_pred EEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEE
Confidence 99999999999999999999999852 358999999999999999999999999999999988
Q ss_pred ee
Q 005806 673 FN 674 (676)
Q Consensus 673 ~n 674 (676)
..
T Consensus 246 ~~ 247 (367)
T 2y6e_A 246 KF 247 (367)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=3.2e-36 Score=319.21 Aligned_cols=200 Identities=25% Similarity=0.341 Sum_probs=171.1
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC---CCCCchHHHHHHHHHHHHhh--CCCCCChHHHHHHH
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC---CGKDWCLMCELEQHVMMLRE--SAGPLSPGRILSHM 549 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~---~~~~~~Ll~~L~~Lf~~L~~--s~~~isP~~fl~~L 549 (676)
.|++||.|+||||||||+||+|+++|+|+++++...+.... .....+++++|..||..||. ....++|..|+..+
T Consensus 7 ~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l 86 (348)
T 3nhe_A 7 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQI 86 (348)
T ss_dssp CSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHHHH
T ss_pred CCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHHHH
Confidence 78999999999999999999999999999999986443322 23457899999999999983 44789999999999
Q ss_pred HhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCc------------------ccccccccccccceEEEEEE
Q 005806 550 RSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDP------------------RLQETTFIQHTFGGRLWSKV 611 (676)
Q Consensus 550 ~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~------------------~~~~~s~I~~iF~G~l~s~i 611 (676)
+...+.|.+++||||||||.+|||.||+++............ .....++|.++|+|++++.+
T Consensus 87 ~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~ 166 (348)
T 3nhe_A 87 QRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSL 166 (348)
T ss_dssp HHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEE
T ss_pred HHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEEEE
Confidence 999999999999999999999999999998532211111000 01345789999999999999
Q ss_pred EeCCCCCeeeeeeeeeeEEEecCCC---CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 612 KCLRCSHESERYENIMDLTLEIYGW---VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 612 ~C~~C~~~S~~~E~F~~LSL~Ip~~---~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
+|..|++.+.++|+|++|+|+|+.. ..+|++||+.|+++|.++|+|+|+|++|++++.|+|..
T Consensus 167 ~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~ 232 (348)
T 3nhe_A 167 TCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKF 232 (348)
T ss_dssp EETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEE
T ss_pred EcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEE
Confidence 9999999999999999999999963 35999999999999999999999999999999999863
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=3.1e-36 Score=328.74 Aligned_cols=199 Identities=25% Similarity=0.367 Sum_probs=168.5
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC-----CCCCchHHHHHHHHHHHHhhCC-CCCChHHHHHH
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC-----CGKDWCLMCELEQHVMMLRESA-GPLSPGRILSH 548 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~-----~~~~~~Ll~~L~~Lf~~L~~s~-~~isP~~fl~~ 548 (676)
.+++||.|+|||||||||||+|+++|+|+++|+...+.... .....++..+|..++..||... ..++|..|+..
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~ 139 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKIT 139 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHH
T ss_pred CCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHHH
Confidence 67899999999999999999999999999999875432111 1224578899999999999765 77999999999
Q ss_pred HHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCC-------CCCc-----------ccccccccccccceEEEEE
Q 005806 549 MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGES-------KVDP-----------RLQETTFIQHTFGGRLWSK 610 (676)
Q Consensus 549 L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~-------~~~~-----------~~~~~s~I~~iF~G~l~s~ 610 (676)
++...+.|.+++||||||||.+|||.||+++........ ..+. .....++|.++|+|+++++
T Consensus 140 l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~ 219 (396)
T 2gfo_A 140 IGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKST 219 (396)
T ss_dssp HHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEEEE
Confidence 999999999999999999999999999999743211100 0000 0124678999999999999
Q ss_pred EEeCCCCCeeeeeeeeeeEEEecCCC-CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 611 VKCLRCSHESERYENIMDLTLEIYGW-VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 611 i~C~~C~~~S~~~E~F~~LSL~Ip~~-~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
++|..|++++.++|+|++|+|+||.. ..+|++||+.|+++|.|+|+|+|+|++|+++++|+|.
T Consensus 220 i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~ 283 (396)
T 2gfo_A 220 VQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKK 283 (396)
T ss_dssp EEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEE
T ss_pred EEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEE
Confidence 99999999999999999999999964 4699999999999999999999999999999999885
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=4.2e-36 Score=319.13 Aligned_cols=199 Identities=31% Similarity=0.423 Sum_probs=164.9
Q ss_pred CCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC--CCCCchHHHHHHHHHHHHhhCC--CCCChHHHHHHHHh
Q 005806 476 SPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA--GPLSPGRILSHMRS 551 (676)
Q Consensus 476 gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~--~~~~~~Ll~~L~~Lf~~L~~s~--~~isP~~fl~~L~~ 551 (676)
|.+||.|+||||||||+||+|+++|+|+++|+........ .....+++.+|..||..||... ..++|..|+.+++.
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~ 81 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQK 81 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Confidence 6799999999999999999999999999999875432211 1234689999999999998654 68999999999999
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCC------------------Cc---------------ccccccc
Q 005806 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKV------------------DP---------------RLQETTF 598 (676)
Q Consensus 552 ~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~------------------~~---------------~~~~~s~ 598 (676)
..+.|.+++||||||||.+|||.||+++.......... .+ .....++
T Consensus 82 ~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 161 (355)
T 3i3t_A 82 YVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSK 161 (355)
T ss_dssp HCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCSH
T ss_pred hChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCCc
Confidence 99999999999999999999999999974321110000 00 0123577
Q ss_pred cccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCCC-----CCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 599 IQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGW-----VESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 599 I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~-----~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
|.++|+|++.+.++|..|++.+.++|+|++|+|+||.. ..+|++||+.|+++|.++|+|+|+|++|++++.|+|.
T Consensus 162 i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~ 241 (355)
T 3i3t_A 162 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKK 241 (355)
T ss_dssp HHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEE
T ss_pred ccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEE
Confidence 99999999999999999999999999999999999853 4699999999999999999999999999999999986
Q ss_pred e
Q 005806 674 N 674 (676)
Q Consensus 674 n 674 (676)
.
T Consensus 242 ~ 242 (355)
T 3i3t_A 242 L 242 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=9.8e-34 Score=304.23 Aligned_cols=182 Identities=23% Similarity=0.316 Sum_probs=159.7
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcC
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~ 554 (676)
.|++||.|+||||||||+||+|+++|+|+++++...... .....++.++|+.+|..|+.+..++.|..|+..+. .+
T Consensus 4 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~--~~ 79 (353)
T 1nb8_A 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG--WE 79 (353)
T ss_dssp SSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT--SCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHT--CC
T ss_pred CCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC--CcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcC--CC
Confidence 689999999999999999999999999999998643221 22346799999999999998888999999998875 36
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecC
Q 005806 555 QIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIY 634 (676)
Q Consensus 555 ~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip 634 (676)
.|.+++||||||||.+|||.||+++.. ....++|.++|+|++.+.++|..|++.+.++|+|++|+|+|+
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~-----------~~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~ 148 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKG-----------TCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK 148 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTT-----------STTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCT
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcC-----------CCccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEEC
Confidence 799999999999999999999998621 123468999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 635 GWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 635 ~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
+ ..+|++||+.|+.+|.|+|+|+|.|++|+ ++.|+|.
T Consensus 149 ~-~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~ 185 (353)
T 1nb8_A 149 G-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKG 185 (353)
T ss_dssp T-CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEE
T ss_pred C-CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEE
Confidence 7 67999999999999999999999999997 5677764
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=3.8e-33 Score=303.03 Aligned_cols=195 Identities=20% Similarity=0.223 Sum_probs=159.5
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCC--ccC-CCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHh
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHS--SAC-CGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 551 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~--~~~-~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~ 551 (676)
..++||.|+|||||||||||+|+|+|+|+++|+..... ... .....+++++|+.||..|+....+++|..|+..|+.
T Consensus 12 ~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~~ 91 (404)
T 2ayn_A 12 ELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHM 91 (404)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHHH
T ss_pred CCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 67899999999999999999999999999999986543 111 123578999999999999987789999999999999
Q ss_pred hcCCCC------CCCcccHHHHHHHHHHHHHHHHHhhcCCCCC--------CCcccccccccccccceEEEEEEEeCCCC
Q 005806 552 ISCQIG------DGSQEDAHEFLRLLVASMQSICLERHGGESK--------VDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (676)
Q Consensus 552 ~~~~F~------~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~--------~~~~~~~~s~I~~iF~G~l~s~i~C~~C~ 617 (676)
..+.|. +++||||||||.+||+.||+++......... ........++|.++|+|+++++++|..|+
T Consensus 92 ~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C~ 171 (404)
T 2ayn_A 92 AFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESE 171 (404)
T ss_dssp HCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSSC
T ss_pred hCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCCC
Confidence 988887 5899999999999999999986322100000 00012345789999999999999999999
Q ss_pred Cee--eeeeeeeeEEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 618 HES--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 618 ~~S--~~~E~F~~LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
+.+ .++|+|++|+|+|+....+|++||+.|+. |.++ |+|++|++++.|+|..
T Consensus 172 ~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~ 225 (404)
T 2ayn_A 172 EEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSS 225 (404)
T ss_dssp CCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEE
T ss_pred CccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeee
Confidence 995 78999999999999866799999999997 4454 7999999999888753
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.98 E-value=1.7e-32 Score=305.16 Aligned_cols=198 Identities=24% Similarity=0.403 Sum_probs=162.9
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccC--CCCCchHHHHHHHHHHHHhhCC----------CCCCh
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSAC--CGKDWCLMCELEQHVMMLRESA----------GPLSP 542 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~--~~~~~~Ll~~L~~Lf~~L~~s~----------~~isP 542 (676)
.|.+||.|+|||||||||||+|+++|+|+++++...+...+ ..+..++.++|..+|..|+... ..+.|
T Consensus 139 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 218 (476)
T 3mhs_A 139 DGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQ 218 (476)
T ss_dssp TCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSC
T ss_pred CCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccccCc
Confidence 68899999999999999999999999999999975544332 2346789999999999998632 24566
Q ss_pred HHHHHH---HHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCC--CCcccccccccccccceEEEEEEEeCCCC
Q 005806 543 GRILSH---MRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESK--VDPRLQETTFIQHTFGGRLWSKVKCLRCS 617 (676)
Q Consensus 543 ~~fl~~---L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~--~~~~~~~~s~I~~iF~G~l~s~i~C~~C~ 617 (676)
..+... ++...+.|.+++||||||||.+||+.||+++......... ........++|.++|+|++++.++|..|+
T Consensus 219 ~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~ 298 (476)
T 3mhs_A 219 TGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQ 298 (476)
T ss_dssp HHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTC
T ss_pred chHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCC
Confidence 665554 4578889999999999999999999999998654332111 11223356799999999999999999999
Q ss_pred Ceee-eeeeeeeEEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 618 HESE-RYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 618 ~~S~-~~E~F~~LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
+++. ++|+|++|+|+|++ ..+|++||+.|+++|.++|.+ |+|++|+.++.|+|..
T Consensus 299 ~~s~~~~e~f~~LsL~i~~-~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~ 354 (476)
T 3mhs_A 299 NNSKTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQL 354 (476)
T ss_dssp CCCEEEEEEESCEEECCTT-CCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEE
T ss_pred CeeCCcccchhhhccchhh-hhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEE
Confidence 9975 49999999999997 689999999999999999755 9999999999998863
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.97 E-value=6e-32 Score=304.84 Aligned_cols=185 Identities=23% Similarity=0.303 Sum_probs=158.7
Q ss_pred ccCCCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHh
Q 005806 472 IDLLSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRS 551 (676)
Q Consensus 472 ~~~~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~ 551 (676)
....+++||.|+||||||||+||+|+++|+|+++++..... ......++.++|+.+|..|+.+..++.|..|+..+.
T Consensus 170 ~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~- 246 (522)
T 2f1z_A 170 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG- 246 (522)
T ss_dssp TTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC--SSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC-
T ss_pred cccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhcccc--CCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcC-
Confidence 33478999999999999999999999999999999764321 123346799999999999998888999999988764
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCeeeeeeeeeeEEE
Q 005806 552 ISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHESERYENIMDLTL 631 (676)
Q Consensus 552 ~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL 631 (676)
.+.|.+++||||||||.+||+.||+++... ...++|.++|+|++++.++|..|++.+.+.|+|++|+|
T Consensus 247 -~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL 314 (522)
T 2f1z_A 247 -WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQL 314 (522)
T ss_dssp -CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------TTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEE
T ss_pred -CccCCCcccccHHHHHHHHHHHHHhhccCC-----------ccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEE
Confidence 357899999999999999999999987321 13468999999999999999999999999999999999
Q ss_pred ecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEe
Q 005806 632 EIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFF 673 (676)
Q Consensus 632 ~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~ 673 (676)
+|++ ..+|++||+.|+.+|.|+|+|+|.|++|+ ++.|+|.
T Consensus 315 ~i~~-~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~ 354 (522)
T 2f1z_A 315 SIKG-KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKG 354 (522)
T ss_dssp CCTT-CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEE
T ss_pred EeCC-cccchHHHHHhhceeecCCcceeecCcCC-ccceEEE
Confidence 9997 67999999999999999999999999997 5677764
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.97 E-value=3.6e-32 Score=297.36 Aligned_cols=179 Identities=20% Similarity=0.189 Sum_probs=150.3
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCC-------CchHHHHHHHHHHHHhhCC-CCCChHHHH
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGK-------DWCLMCELEQHVMMLRESA-GPLSPGRIL 546 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~-------~~~Ll~~L~~Lf~~L~~s~-~~isP~~fl 546 (676)
.+++||.|+|||||||||||+|+++|+|+++|+.......+... ..+++++|+.||..|+.+. .+++|..|+
T Consensus 22 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~~ 101 (415)
T 1vjv_A 22 QLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVLL 101 (415)
T ss_dssp CCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHHH
T ss_pred CCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHHHH
Confidence 78999999999999999999999999999999986554332222 4589999999999999776 889999999
Q ss_pred HHHHhhcCCCC-------CCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEEEEeCCCCCe
Q 005806 547 SHMRSISCQIG-------DGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSKVKCLRCSHE 619 (676)
Q Consensus 547 ~~L~~~~~~F~-------~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~i~C~~C~~~ 619 (676)
..|+...+.|. +++||||||||.+||+.|++++.. ++|.++|+ ++++.++|..|++.
T Consensus 102 ~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------~~i~~~F~-~~~~~~~C~~C~~~ 165 (415)
T 1vjv_A 102 NTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------KFSEDFRI-QFKTTIKDTANDND 165 (415)
T ss_dssp HHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------HHHTTTCE-EEEEEEEETTEEEE
T ss_pred HHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------chHHHHHH-hheEEEEECCCCCC
Confidence 99999999998 899999999999999999998732 58999999 99999999999999
Q ss_pred e--eeeeeeeeEEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcceeEEee
Q 005806 620 S--ERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLVEAHFFN 674 (676)
Q Consensus 620 S--~~~E~F~~LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~~A~K~n 674 (676)
+ .++|+|++|+|+|+....+|++||+.|+.+ .++ |+|++|++++.|+|..
T Consensus 166 s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~ 217 (415)
T 1vjv_A 166 ITVKENESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEK 217 (415)
T ss_dssp EEEECCCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEE
T ss_pred ccccccccceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEE
Confidence 6 589999999999998667999999999974 444 7999999999988863
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.97 E-value=1e-31 Score=318.44 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=161.2
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCC---ccCCCCCchHHHHHHHHHHHHhh----------------
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHS---SACCGKDWCLMCELEQHVMMLRE---------------- 535 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~---~~~~~~~~~Ll~~L~~Lf~~L~~---------------- 535 (676)
.|++||.|+|||||||||||+|+++|+|+++|+...+. .....+..+++++|.+||..|+.
T Consensus 342 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~ 421 (854)
T 3ihp_A 342 PGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERV 421 (854)
T ss_dssp TTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC--------------
T ss_pred CCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccc
Confidence 78999999999999999999999999999999753321 12234567899999999999984
Q ss_pred -----CCCCCChHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccceEEEEE
Q 005806 536 -----SAGPLSPGRILSHMRSISCQIGDGSQEDAHEFLRLLVASMQSICLERHGGESKVDPRLQETTFIQHTFGGRLWSK 610 (676)
Q Consensus 536 -----s~~~isP~~fl~~L~~~~~~F~~~~QQDAhEFL~~LLd~L~ee~~~~l~~~~~~~~~~~~~s~I~~iF~G~l~s~ 610 (676)
....++|..|+..++..++.|.+++||||||||.+||+.|++++. ..++|.++|+|+++++
T Consensus 422 ~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~--------------~~s~i~~lF~G~l~s~ 487 (854)
T 3ihp_A 422 PEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR--------------SSENPNEVFRFLVEEK 487 (854)
T ss_dssp -------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT--------------TSCCGGGGTCEEEEEE
T ss_pred cccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc--------------ccCCchhhcCceEEEE
Confidence 235799999999999999999999999999999999999998751 1357899999999999
Q ss_pred EEeCCCCCeeeeeeeeeeEEEecCCC-------------------------------CCcHHHHHHhcCCCcccCCCCcc
Q 005806 611 VKCLRCSHESERYENIMDLTLEIYGW-------------------------------VESLEDALTQFTSPEDLDGENMY 659 (676)
Q Consensus 611 i~C~~C~~~S~~~E~F~~LSL~Ip~~-------------------------------~~SLed~L~~f~~~E~LdgdNky 659 (676)
++|..|++++.++++|++|+|+||.. ..+|++||+.|+++|.|+| |
T Consensus 488 i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y 564 (854)
T 3ihp_A 488 IKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---F 564 (854)
T ss_dssp EEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---E
T ss_pred EEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---e
Confidence 99999999999999999999999952 1599999999999999997 9
Q ss_pred ccccCCCcceeEEee
Q 005806 660 KCARFVNLVEAHFFN 674 (676)
Q Consensus 660 ~CekCkkk~~A~K~n 674 (676)
+|++|++++.|+|+.
T Consensus 565 ~C~~C~~k~~a~K~~ 579 (854)
T 3ihp_A 565 WSTALQAKSVAVKTT 579 (854)
T ss_dssp EETTTTEEEEEEEEE
T ss_pred eccccCCcceeeEEE
Confidence 999999999999874
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.53 E-value=3e-15 Score=159.82 Aligned_cols=101 Identities=21% Similarity=0.216 Sum_probs=83.2
Q ss_pred CCCCCcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHH-HHHHHHHhhCCCCCChHHHHHHHHhhc
Q 005806 475 LSPRGLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCEL-EQHVMMLRESAGPLSPGRILSHMRSIS 553 (676)
Q Consensus 475 ~gp~GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L-~~Lf~~L~~s~~~isP~~fl~~L~~~~ 553 (676)
..|+||.|+||||||||.||+|+.+|.+.+.|+..............+...| ..+|..|.. ..+.|..|+..|++..
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~ 84 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKIL 84 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHH
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHh
Confidence 3589999999999999999999999999999998744332222224588888 899999987 8899999999999998
Q ss_pred CCCC-----CCCcccHHHHHHHHHHHHHH
Q 005806 554 CQIG-----DGSQEDAHEFLRLLVASMQS 577 (676)
Q Consensus 554 ~~F~-----~~~QQDAhEFL~~LLd~L~e 577 (676)
|+|. +++||||+|||..||..|..
T Consensus 85 pQfae~~G~~~~QQDaEE~~t~Ll~~L~~ 113 (374)
T 2vhf_A 85 EKVEAASGFTSEEKDPEEFLNILFHHILR 113 (374)
T ss_dssp HHHC--------CCCHHHHHHHHHTTTTC
T ss_pred HHHhcccCCCccccCHHHHHHHHHHHHhh
Confidence 8774 48999999999999998864
No 12
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=99.11 E-value=5.9e-11 Score=98.61 Aligned_cols=48 Identities=38% Similarity=0.846 Sum_probs=43.4
Q ss_pred CCccccccCCccccccCCCCcceecChhHhhHhhHHHhHHhchhhhhcc
Q 005806 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 147 (676)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~~~ 147 (676)
..+.|+.|++.++++|++|+.++||+++||++||+ .||.+|..++...
T Consensus 14 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~-~HK~~C~~~~~~~ 61 (70)
T 2d8q_A 14 ERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWE-KHGKTCVLAAQGD 61 (70)
T ss_dssp CCCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHH-HHHHHCCCCCCCC
T ss_pred CCCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHH-HHHHHHHHHHHhh
Confidence 35799999999999999999999999999999999 7999999776543
No 13
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=99.02 E-value=9e-11 Score=95.68 Aligned_cols=45 Identities=33% Similarity=0.738 Sum_probs=41.7
Q ss_pred CCccccccCCccccccCCCCcceecChhHhhHhhHHHhHHhchhhh
Q 005806 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (676)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~ 144 (676)
....|+.|++.++++|++|+.++||+++||+.||+ .||.+|..++
T Consensus 16 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~-~Hk~~C~~~~ 60 (64)
T 2odd_A 16 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTL 60 (64)
T ss_dssp CSSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHH-HHTTTTTSSC
T ss_pred CCCcCccccCCCcccCCCCCChhhCCHHHHHHHHH-HHhHHHhccc
Confidence 45799999999999999999999999999999999 9999998654
No 14
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.99 E-value=1.8e-10 Score=92.83 Aligned_cols=45 Identities=31% Similarity=0.734 Sum_probs=41.5
Q ss_pred CCccccccCCccccccCCCCcceecChhHhhHhhHHHhHHhchhhh
Q 005806 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (676)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~ 144 (676)
....|+.|++.++++|++|+.++||+++||+.||+ .||.+|..++
T Consensus 14 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~-~Hk~~C~~~~ 58 (60)
T 2dj8_A 14 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICSGPS 58 (60)
T ss_dssp CSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHH-HHTTTSCCSS
T ss_pred CCcccccCCCCCcccCCCCCCEeeeCHHHHHHHHH-HHHHHHHhcc
Confidence 34699999999999999999999999999999999 8999998754
No 15
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.4e-10 Score=93.43 Aligned_cols=45 Identities=33% Similarity=0.738 Sum_probs=41.4
Q ss_pred CCccccccCCccccccCCCCcceecChhHhhHhhHHHhHHhchhhh
Q 005806 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLE 144 (676)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~ 144 (676)
....|+.|++.++++|++|+.++||+++||+.||+ .||.+|..++
T Consensus 12 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~-~Hk~~C~~~~ 56 (60)
T 2od1_A 12 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICGQTL 56 (60)
T ss_dssp CSSCCTTTSSCCCEECTTTSCCEESSHHHHHHHHH-HHTTTSSCSS
T ss_pred CCCccccCCCcccccCCCCCCeeecCHHHHHHHHH-HHhHHHcccc
Confidence 34699999999999999999999999999999999 9999998654
No 16
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.91 E-value=3.7e-10 Score=88.13 Aligned_cols=43 Identities=37% Similarity=0.811 Sum_probs=38.5
Q ss_pred CCccccccCCccccccCCCCcceecChhHhhHhhHHHhHHhchh
Q 005806 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQ 142 (676)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~ 142 (676)
....|..|++.++++|++|+.++||+++||..||+ .||.+|..
T Consensus 8 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~-~Hk~~C~~ 50 (52)
T 2jw6_A 8 KEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWK-DHQHICGQ 50 (52)
T ss_dssp ---CCSSSSSSCSEECTTTCSSEESSHHHHHHHTT-TGGGTTTC
T ss_pred cCCcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHH-HHCHHHcc
Confidence 34699999999999999999999999999999999 89999974
No 17
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.34 E-value=2e-07 Score=102.48 Aligned_cols=50 Identities=38% Similarity=0.875 Sum_probs=44.8
Q ss_pred CCCccccccCC--ccccccCCCCcceecChhHhhHhhHHHhHHhchhhhhccC
Q 005806 98 NGFQLCARCFA--PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTSS 148 (676)
Q Consensus 98 ~~~~~C~~C~~--~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~~~~ 148 (676)
.....|.+|++ ..+.+|++|+.++|||++||+.||+ .||.+|+.++...+
T Consensus 45 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~~~ 96 (429)
T 3qwp_A 45 SRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKRECKCLKSCKP 96 (429)
T ss_dssp GBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHH-HHHHHHHHHHHTTT
T ss_pred cCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhh-hhHHhhhhHHhcCc
Confidence 45679999996 5788999999999999999999999 99999999987754
No 18
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.32 E-value=1.8e-07 Score=103.11 Aligned_cols=50 Identities=34% Similarity=0.789 Sum_probs=44.7
Q ss_pred CCCCccccccCC--ccccccCCCCcceecChhHhhHhhHHHhHHhchhhhhcc
Q 005806 97 KNGFQLCARCFA--PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKTS 147 (676)
Q Consensus 97 ~~~~~~C~~C~~--~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~~~ 147 (676)
......|.+|++ ..+.+|++|+.++|||++||+.||+ .||.+|..++...
T Consensus 46 ~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~l~~~~ 97 (433)
T 3qww_A 46 GERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWP-LHKLECSSMVVLG 97 (433)
T ss_dssp GGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHH-HHTTTHHHHHHSS
T ss_pred cccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhh-HHHHHHHHHHHhC
Confidence 345679999997 4789999999999999999999999 9999999998765
No 19
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.22 E-value=5.2e-07 Score=101.01 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=54.6
Q ss_pred cccccccccccccccCCCccCCCCCCCCCCCCccccccCC--ccccccCCCCcceecChhHhhHhhHHHhHHhchhhhhc
Q 005806 69 SINEFHVSTSKNEFNVPTLKNEFPASTSKNGFQLCARCFA--PATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQLEKT 146 (676)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~--~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~~~~~ 146 (676)
++++..+..+...+..++.+.. +........|.+|++ ..+.+|++|+.++|||++||+.||+ .||.+|..++..
T Consensus 21 lvAtr~i~~Ge~Il~e~P~~~v---~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~~ 96 (490)
T 3n71_A 21 LKATKEFWAADVIFAERAYSAV---VFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWL-NHKNECAAIKKY 96 (490)
T ss_dssp EEESSCBCTTCEEEEECCSEEE---ECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHH-HHHHHHHHHHHH
T ss_pred EEeccCCCCCCEEEecCCceEE---ecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhh-HHHHHhHHHHhc
Confidence 4555555555444444443211 122345679999986 4678999999999999999999999 999999999876
Q ss_pred c
Q 005806 147 S 147 (676)
Q Consensus 147 ~ 147 (676)
.
T Consensus 97 ~ 97 (490)
T 3n71_A 97 G 97 (490)
T ss_dssp T
T ss_pred C
Confidence 4
No 20
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.19 E-value=0.045 Score=43.05 Aligned_cols=39 Identities=36% Similarity=0.880 Sum_probs=31.2
Q ss_pred CCCccccccCCccccccCCCCcceecChhHhhHhhHHHhHHhchh
Q 005806 98 NGFQLCARCFAPATTRCSRCKSVRYCSGKCQIIHWRQVHKQECQQ 142 (676)
Q Consensus 98 ~~~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~~~Hk~~C~~ 142 (676)
.....|..|+..+.-+|.+|. ++|||..|. + .||..|..
T Consensus 10 ~~~~~C~vC~~~~kY~CPrC~-~~yCSl~C~----k-~Hk~~C~~ 48 (56)
T 2yqq_A 10 CSTVVCVICLEKPKYRCPACR-VPYCSVVCF----R-KHKEQCNP 48 (56)
T ss_dssp CCCCCCTTTCSCCSEECTTTC-CEESSHHHH----H-HHHHHCCC
T ss_pred CCCCccCcCcCCCeeeCCCCC-CCeeCHHHH----H-HHHhhCcC
Confidence 344589999998888999999 679999995 4 66666754
No 21
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=85.97 E-value=0.43 Score=37.85 Aligned_cols=30 Identities=43% Similarity=0.933 Sum_probs=25.2
Q ss_pred ccccccCC----ccccccCCCCcceecChhHhhHh
Q 005806 101 QLCARCFA----PATTRCSRCKSVRYCSGKCQIIH 131 (676)
Q Consensus 101 ~~C~~C~~----~~~~~Cs~Ck~v~YCs~~CQ~~d 131 (676)
..|..|.. .+.-+|.+|. ++|||..|.+.|
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k~H 45 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCN-APYCSLRCYRTH 45 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTC-CEESSHHHHHHH
T ss_pred CcCcCCCCCcCCCccccCcCCC-CCccChHHHHHH
Confidence 58999984 5788999999 679999998743
No 22
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=73.42 E-value=6.2 Score=41.33 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=45.8
Q ss_pred CCCCcccCCchhhHHHHHHHHHcChH-HHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcC
Q 005806 476 SPRGLLNCGNSCYANAVLQCLTCTKP-LVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISC 554 (676)
Q Consensus 476 gp~GL~NlGNTCYmNSVLQ~L~~~p~-fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~ 554 (676)
|.+=|.=.-|.||+||++=.|-+... |+ .. .|+++...+... .|..|...+-...
T Consensus 101 G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~----------------~~---~l~~aw~~f~~G----d~~~FVa~~Ya~~- 156 (315)
T 2fe8_A 101 GLTSIKWADNNCYLSSVLLALQQLEVKFN----------------AP---ALQEAYYRARAG----DAANFCALILAYS- 156 (315)
T ss_dssp TEECCCCCTTTHHHHHHHHHHHTSCCCBS----------------SH---HHHHHHHHHHHT----CCHHHHHHHHHHT-
T ss_pred CEEEEeecCCccHHHHHHHHHHhcCCccC----------------CH---HHHHHHHHHhCC----ChHHHHHHHHHhc-
Confidence 33445555699999999877744322 11 11 344444444333 5677777664332
Q ss_pred CCCCCCcccHHHHHHHHHHH
Q 005806 555 QIGDGSQEDAHEFLRLLVAS 574 (676)
Q Consensus 555 ~F~~~~QQDAhEFL~~LLd~ 574 (676)
....|+--||+++|..||..
T Consensus 157 ~~~~G~~gDa~~~L~~Ll~~ 176 (315)
T 2fe8_A 157 NKTVGELGDVRETMTHLLQH 176 (315)
T ss_dssp TCCTTSCCCHHHHHHHHHTT
T ss_pred CCCCCCCccHHHHHHHHHhc
Confidence 34568899999999999543
No 23
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=58.01 E-value=6.4 Score=38.89 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=42.5
Q ss_pred CcccCCchhhHHHHHHHHHcChHHHHHHHhccCCccCCCCCchHHHHHHHHHHHHhhCCCCCChHHHHHHHHhhcCCCCC
Q 005806 479 GLLNCGNSCYANAVLQCLTCTKPLVIYLLRRSHSSACCGKDWCLMCELEQHVMMLRESAGPLSPGRILSHMRSISCQIGD 558 (676)
Q Consensus 479 GL~NlGNTCYmNSVLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~Ll~~L~~Lf~~L~~s~~~isP~~fl~~L~~~~~~F~~ 558 (676)
=|.=.-|.||+||++=.|-+...+ ++.++..+ ..=.|..|+..+-... .+..
T Consensus 15 vLkq~dNNCwVNaa~l~LQ~~~~~-----------------------~~~aw~~f----~~Gd~~~fV~~~Ya~~-~~~~ 66 (211)
T 3mp2_A 15 ILKQGDNNCWINACCYQLQAFDFF-----------------------NNEAWEKF----KKGDVMDFVNLCYAAT-TLAR 66 (211)
T ss_dssp EECCCTTCHHHHHHHHHHTTCTTC-----------------------CCHHHHHH----TTTCCHHHHHHHHHHH-TCCT
T ss_pred EEEccCCCcHHHHHHHHHHhcChh-----------------------HHHHHHHH----hCCChHHHHHHHHHHc-CCCC
Confidence 344456999999998777544332 22222222 2235677776664332 4556
Q ss_pred CCcccHHHHHHHHHH
Q 005806 559 GSQEDAHEFLRLLVA 573 (676)
Q Consensus 559 ~~QQDAhEFL~~LLd 573 (676)
|+--||+++|..||.
T Consensus 67 G~~gDa~~~L~~Ll~ 81 (211)
T 3mp2_A 67 GHSGDAEYLLELMLN 81 (211)
T ss_dssp TSCCCHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHH
Confidence 899999999999983
No 24
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=48.55 E-value=8.4 Score=35.71 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.4
Q ss_pred CCCCcccCCchhhHHHHHHHHHcC
Q 005806 476 SPRGLLNCGNSCYANAVLQCLTCT 499 (676)
Q Consensus 476 gp~GL~NlGNTCYmNSVLQ~L~~~ 499 (676)
.+.|+.|.-++|++|++||.....
T Consensus 12 ~fys~pN~hdncWLNtilQLfryv 35 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYV 35 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHH
T ss_pred ccccCCCCCcchHHHHHHHHHHHc
Confidence 457999999999999999987543
No 25
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=38.25 E-value=14 Score=30.03 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=21.8
Q ss_pred ccccccCCccccccCCCCcceecChhHhhHhhH
Q 005806 101 QLCARCFAPATTRCSRCKSVRYCSGKCQIIHWR 133 (676)
Q Consensus 101 ~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~dW~ 133 (676)
..|..|+++..-+ ..=..+.|||+.|+..|--
T Consensus 10 ~~CP~Cgkp~~W~-~~~~~rPFCSeRCr~iDLg 41 (68)
T 1lv3_A 10 VNCPTCGKTVVWG-EISPFRPFCSKRCQLIDLG 41 (68)
T ss_dssp EECTTTCCEEECS-SSSSCCSSSSHHHHHHHHS
T ss_pred CcCCCCCCccccc-ccCCCCcccCHHHHhhhHH
Confidence 5899999854311 0123567999999999853
No 26
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=30.49 E-value=21 Score=27.46 Aligned_cols=48 Identities=15% Similarity=0.386 Sum_probs=25.8
Q ss_pred ccccceEEEEEEEeCCCCCeeeeeeeeeeEEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCc
Q 005806 600 QHTFGGRLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNL 667 (676)
Q Consensus 600 ~~iF~G~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk 667 (676)
..-|...-+..+.|..|++... .|+.+.+--.+ ++.++- |.|.+|+..
T Consensus 5 e~~~~~~~~~~~~Cp~Cg~~~~---~~~q~Q~rsad-------------ep~T~f----y~C~~Cg~~ 52 (57)
T 1qyp_A 5 EQDLKTLPTTKITCPKCGNDTA---YWWEMQTRAGD-------------EPSTIF----YKCTKCGHT 52 (57)
T ss_dssp CCCCSSSCEEECCCTTTCCSEE---EEEEECCSSSS-------------CSSEEE----EEESSSCCE
T ss_pred hhhhhcCCceEeECCCCCCCEE---EEEEeecccCC-------------CCCcEE----EEcCCCCCE
Confidence 3334333334688999998433 33333332111 223332 889999874
No 27
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=29.28 E-value=23 Score=32.53 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=27.1
Q ss_pred EEEEEEEeCCCCCeeeeeeeeeeEEEecCCCCCcHHHHHHhcCCCcccCCCCccccccCCCcc
Q 005806 606 RLWSKVKCLRCSHESERYENIMDLTLEIYGWVESLEDALTQFTSPEDLDGENMYKCARFVNLV 668 (676)
Q Consensus 606 ~l~s~i~C~~C~~~S~~~E~F~~LSL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekCkkk~ 668 (676)
...-...|.+||+.....+.+..|.-.+. + ...|-||.+-. .+.|+.|+...
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~-------~--~~h~~p~~~~~--~~~CP~Cgs~~ 117 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIK-------E--DIHFIPEVVHA--FLACPKCGSHD 117 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCG-------G--GCCCCGGGCGG--GCSCSSSSCCC
T ss_pred ecCCcEECCCCCCEEeccccccccccccc-------c--ccccccccccc--CCcCccccCCc
Confidence 44557899999998554331111100000 0 11234444432 36799999864
No 28
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.47 E-value=47 Score=26.85 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=19.3
Q ss_pred CCCccccccCCc-cc-----cccCCCCcceecCh
Q 005806 98 NGFQLCARCFAP-AT-----TRCSRCKSVRYCSG 125 (676)
Q Consensus 98 ~~~~~C~~C~~~-~~-----~~Cs~Ck~v~YCs~ 125 (676)
....+|..|++. .+ ..| +|..+ ||+.
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~C-rCg~~-FC~~ 44 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSC-RCGYV-FCML 44 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCC-SSSCC-CCTT
T ss_pred ccCCcchhhCCeecccccCceEe-cCCCE-ehhc
Confidence 345799999973 44 489 99976 8875
No 29
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=20.67 E-value=40 Score=25.56 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred CCccccccCCccccccCCCCcceecChhHhhH
Q 005806 99 GFQLCARCFAPATTRCSRCKSVRYCSGKCQII 130 (676)
Q Consensus 99 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~~CQ~~ 130 (676)
....|..||+.....= +=+.-+|||..|.+.
T Consensus 17 ~~~~C~~CG~~i~~~~-~~r~krFCS~sCR~~ 47 (49)
T 2l8e_A 17 NLLKCEYCGKYAPAEQ-FRGSKRFCSMTCAKR 47 (49)
T ss_dssp SEEECTTTCCEEEGGG-CTTTSSSCSHHHHHH
T ss_pred CCCcChhccCcccccc-CCCCCccCCHHHHhh
Confidence 3457999998533211 234457999999865
Done!