Query 005807
Match_columns 676
No_of_seqs 441 out of 2782
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 14:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 5E-136 1E-140 1010.9 60.4 594 51-650 34-644 (663)
2 KOG0102 Molecular chaperones m 100.0 2E-112 4E-117 873.6 49.8 607 50-656 24-634 (640)
3 PLN03184 chloroplast Hsp70; Pr 100.0 2E-109 4E-114 941.9 77.4 619 53-673 39-673 (673)
4 PRK00290 dnaK molecular chaper 100.0 5E-109 1E-113 939.7 79.1 620 53-676 2-625 (627)
5 PTZ00186 heat shock 70 kDa pre 100.0 5E-109 1E-113 929.9 76.4 597 53-651 27-627 (657)
6 PTZ00400 DnaK-type molecular c 100.0 2E-108 5E-113 932.5 72.5 598 53-650 41-639 (663)
7 PRK13411 molecular chaperone D 100.0 3E-107 6E-112 923.4 75.8 599 53-653 2-605 (653)
8 PTZ00009 heat shock 70 kDa pro 100.0 6E-107 1E-111 922.2 76.9 619 52-675 3-653 (653)
9 PRK13410 molecular chaperone D 100.0 9E-107 2E-111 916.4 76.1 595 53-649 2-603 (668)
10 CHL00094 dnaK heat shock prote 100.0 9E-105 2E-109 901.8 76.0 616 53-673 2-620 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 2E-103 3E-108 892.2 75.7 593 54-649 1-595 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 2E-102 5E-107 876.6 75.4 583 55-650 1-586 (599)
13 KOG0101 Molecular chaperones H 100.0 1E-104 3E-109 852.3 51.9 595 51-650 5-615 (620)
14 PRK05183 hscA chaperone protei 100.0 3E-101 8E-106 868.3 74.0 582 53-651 19-603 (616)
15 PRK01433 hscA chaperone protei 100.0 2.9E-97 6E-102 828.5 70.6 556 53-649 19-587 (595)
16 COG0443 DnaK Molecular chapero 100.0 7.7E-96 2E-100 812.2 61.7 573 52-649 4-578 (579)
17 PF00012 HSP70: Hsp70 protein; 100.0 3.1E-92 6.6E-97 807.9 67.5 591 55-649 1-602 (602)
18 KOG0103 Molecular chaperones H 100.0 3E-82 6.5E-87 670.3 50.8 578 54-640 2-639 (727)
19 KOG0104 Molecular chaperones G 100.0 3.7E-71 8.1E-76 586.2 51.1 582 52-646 21-734 (902)
20 PRK11678 putative chaperone; P 100.0 4.3E-56 9.2E-61 480.7 38.7 338 54-427 1-448 (450)
21 PRK13928 rod shape-determining 100.0 1E-38 2.2E-43 337.9 32.1 309 56-427 6-324 (336)
22 PRK13929 rod-share determining 100.0 2.2E-38 4.8E-43 334.2 32.7 307 55-424 6-324 (335)
23 TIGR00904 mreB cell shape dete 100.0 5.5E-36 1.2E-40 316.8 32.8 308 56-426 5-327 (333)
24 PRK13927 rod shape-determining 100.0 5.9E-36 1.3E-40 317.2 31.3 308 55-426 7-324 (334)
25 PRK13930 rod shape-determining 100.0 7.2E-35 1.6E-39 309.3 31.0 309 55-426 10-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 4.9E-32 1.1E-36 279.0 23.0 310 55-425 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 2.2E-28 4.8E-33 241.2 26.4 313 54-427 7-332 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 3.5E-29 7.5E-34 250.4 20.8 202 162-422 37-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 2.9E-27 6.2E-32 240.8 29.3 202 164-424 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 6.4E-22 1.4E-26 212.5 28.0 193 200-423 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 6.4E-22 1.4E-26 215.0 25.1 195 202-426 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 2.4E-18 5.3E-23 181.8 22.5 196 202-427 167-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 1.2E-16 2.5E-21 172.2 19.3 309 55-426 1-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.7 1.2E-15 2.5E-20 164.6 18.7 298 54-426 2-347 (373)
35 COG4820 EutJ Ethanolamine util 99.7 1.8E-16 3.9E-21 145.3 9.3 197 169-424 76-272 (277)
36 PRK13917 plasmid segregation p 99.5 1.9E-12 4.2E-17 136.8 24.8 204 189-430 115-340 (344)
37 PTZ00280 Actin-related protein 99.5 1.5E-12 3.2E-17 141.9 24.7 289 53-403 4-337 (414)
38 PTZ00452 actin; Provisional 99.5 6E-12 1.3E-16 134.9 23.5 304 50-426 2-349 (375)
39 PF00022 Actin: Actin; InterP 99.4 2.4E-12 5.1E-17 140.0 17.3 312 53-427 4-368 (393)
40 PTZ00004 actin-2; Provisional 99.4 3.9E-11 8.4E-16 129.2 22.5 298 54-426 7-352 (378)
41 PTZ00281 actin; Provisional 99.4 3.2E-11 6.9E-16 129.7 20.7 302 54-426 7-350 (376)
42 TIGR01175 pilM type IV pilus a 99.3 1E-10 2.2E-15 125.0 22.3 178 198-424 141-347 (348)
43 PTZ00466 actin-like protein; P 99.3 1.7E-10 3.6E-15 123.9 22.8 299 54-426 13-354 (380)
44 TIGR03739 PRTRC_D PRTRC system 99.3 3.5E-10 7.6E-15 118.9 20.9 203 185-424 101-318 (320)
45 PF11104 PilM_2: Type IV pilus 99.3 6.4E-11 1.4E-15 125.7 14.3 176 200-424 136-339 (340)
46 PF06406 StbA: StbA protein; 99.1 9.4E-10 2E-14 115.4 15.3 172 215-421 141-316 (318)
47 TIGR00241 CoA_E_activ CoA-subs 99.0 5.6E-09 1.2E-13 105.7 16.1 169 219-423 74-248 (248)
48 COG4972 PilM Tfp pilus assembl 99.0 7.6E-08 1.6E-12 96.5 21.7 153 202-405 151-314 (354)
49 KOG0679 Actin-related protein 99.0 8.2E-08 1.8E-12 97.5 21.2 182 54-288 12-202 (426)
50 PRK10719 eutA reactivating fac 98.8 4.9E-08 1.1E-12 103.7 11.9 83 187-279 89-183 (475)
51 PRK10331 L-fuculokinase; Provi 98.8 1.2E-06 2.6E-11 97.5 23.6 205 205-430 219-440 (470)
52 TIGR02628 fuculo_kin_coli L-fu 98.8 5.6E-07 1.2E-11 99.9 20.9 83 342-430 359-444 (465)
53 TIGR03192 benz_CoA_bzdQ benzoy 98.7 2E-06 4.4E-11 87.0 20.8 70 353-426 218-288 (293)
54 PF07520 SrfB: Virulence facto 98.7 4.9E-06 1.1E-10 95.6 25.0 329 100-435 331-843 (1002)
55 PRK15027 xylulokinase; Provisi 98.7 8.5E-07 1.8E-11 99.0 18.8 209 203-430 211-438 (484)
56 COG1070 XylB Sugar (pentulose 98.6 6.7E-07 1.5E-11 100.0 17.0 206 204-426 222-449 (502)
57 PLN00130 succinate dehydrogena 98.6 3.4E-09 7.4E-14 95.3 -1.7 72 1-72 1-76 (213)
58 COG5277 Actin and related prot 98.6 2.1E-06 4.6E-11 93.0 18.9 191 56-288 9-204 (444)
59 TIGR03286 methan_mark_15 putat 98.6 4.7E-06 1E-10 87.7 19.9 71 351-425 331-402 (404)
60 PRK00047 glpK glycerol kinase; 98.6 2.7E-06 5.9E-11 95.4 18.8 197 212-430 236-454 (498)
61 COG1924 Activator of 2-hydroxy 98.5 7.8E-06 1.7E-10 83.9 19.9 73 350-426 317-390 (396)
62 TIGR01314 gntK_FGGY gluconate 98.5 6.9E-06 1.5E-10 92.2 21.5 74 352-429 374-451 (505)
63 PRK13317 pantothenate kinase; 98.4 4E-05 8.7E-10 78.3 22.3 48 378-425 222-273 (277)
64 PTZ00294 glycerol kinase-like 98.4 2.7E-05 5.9E-10 87.4 21.8 78 346-430 376-457 (504)
65 TIGR02261 benz_CoA_red_D benzo 98.4 1.8E-05 3.9E-10 79.1 17.9 71 351-424 187-262 (262)
66 TIGR01315 5C_CHO_kinase FGGY-f 98.4 2.2E-05 4.7E-10 88.9 19.6 87 342-429 407-493 (541)
67 TIGR01311 glycerol_kin glycero 98.3 6.8E-05 1.5E-09 84.0 23.3 82 344-429 367-449 (493)
68 PLN02295 glycerol kinase 98.3 6E-05 1.3E-09 84.8 21.5 80 346-429 377-462 (512)
69 TIGR01234 L-ribulokinase L-rib 98.2 0.00049 1.1E-08 77.9 27.5 84 343-430 403-487 (536)
70 PRK04123 ribulokinase; Provisi 98.2 0.00021 4.5E-09 81.2 24.5 78 345-429 408-489 (548)
71 KOG0676 Actin and related prot 98.1 2.1E-05 4.5E-10 82.4 11.0 215 162-403 77-315 (372)
72 TIGR01312 XylB D-xylulose kina 98.0 0.00074 1.6E-08 75.5 22.6 51 378-429 390-440 (481)
73 PF08841 DDR: Diol dehydratase 97.8 8.9E-05 1.9E-09 72.9 9.4 192 209-423 105-328 (332)
74 KOG2517 Ribulose kinase and re 97.7 0.00094 2E-08 72.6 16.2 77 353-430 388-465 (516)
75 TIGR02259 benz_CoA_red_A benzo 97.6 0.00035 7.6E-09 72.9 10.4 70 352-424 358-432 (432)
76 COG4457 SrfB Uncharacterized p 97.5 0.0092 2E-07 65.3 19.6 91 340-435 742-855 (1014)
77 KOG0677 Actin-related protein 97.3 0.0047 1E-07 60.1 12.6 223 186-429 101-364 (389)
78 KOG0797 Actin-related protein 97.1 0.0062 1.3E-07 64.8 12.4 155 158-325 194-355 (618)
79 PF02782 FGGY_C: FGGY family o 97.1 0.00067 1.5E-08 66.1 4.9 76 350-426 120-196 (198)
80 COG1069 AraB Ribulose kinase [ 97.0 0.0086 1.9E-07 64.9 13.3 218 204-430 233-482 (544)
81 PF06277 EutA: Ethanolamine ut 97.0 0.0053 1.1E-07 66.0 11.5 168 54-277 4-178 (473)
82 PF01869 BcrAD_BadFG: BadF/Bad 96.6 0.74 1.6E-05 47.2 23.1 70 352-424 197-271 (271)
83 PF14574 DUF4445: Domain of un 96.6 0.11 2.3E-06 56.1 17.1 82 341-423 291-374 (412)
84 PLN02669 xylulokinase 96.5 0.0069 1.5E-07 68.7 8.4 72 353-426 421-492 (556)
85 TIGR00555 panK_eukar pantothen 96.1 0.049 1.1E-06 55.5 11.0 46 377-422 229-278 (279)
86 TIGR02627 rhamnulo_kin rhamnul 95.9 0.015 3.4E-07 64.4 7.1 83 344-431 355-438 (454)
87 PRK10640 rhaB rhamnulokinase; 95.7 0.035 7.5E-07 61.8 8.8 51 378-430 375-425 (471)
88 PRK10939 autoinducer-2 (AI-2) 95.7 0.021 4.5E-07 64.5 7.0 51 378-429 409-459 (520)
89 KOG0680 Actin-related protein 95.5 0.77 1.7E-05 46.7 16.2 95 187-286 94-198 (400)
90 PRK10854 exopolyphosphatase; P 95.4 0.11 2.4E-06 58.3 11.3 55 201-256 98-156 (513)
91 PRK11031 guanosine pentaphosph 95.3 0.19 4.2E-06 56.1 13.0 76 201-281 93-171 (496)
92 PF14450 FtsA: Cell division p 95.2 0.061 1.3E-06 47.7 6.9 51 239-289 1-56 (120)
93 KOG0681 Actin-related protein 94.4 0.5 1.1E-05 51.3 12.2 122 160-289 90-217 (645)
94 COG0248 GppA Exopolyphosphatas 94.4 0.93 2E-05 50.2 14.7 90 166-255 53-147 (492)
95 TIGR03706 exo_poly_only exopol 94.3 0.3 6.6E-06 50.9 10.5 52 203-255 89-143 (300)
96 KOG2531 Sugar (pentulose and h 94.3 0.12 2.7E-06 54.7 7.4 56 370-426 434-489 (545)
97 PRK13321 pantothenate kinase; 94.1 2 4.2E-05 43.7 15.6 19 55-73 2-20 (256)
98 PF01968 Hydantoinase_A: Hydan 93.7 0.23 5E-06 51.4 8.1 68 352-422 215-283 (290)
99 COG4819 EutA Ethanolamine util 93.5 0.38 8.1E-06 49.0 8.6 85 188-277 89-180 (473)
100 COG1548 Predicted transcriptio 91.8 1.2 2.5E-05 44.0 9.3 72 171-255 76-148 (330)
101 PRK09604 UGMP family protein; 91.5 21 0.00045 37.8 21.0 46 378-423 254-305 (332)
102 smart00842 FtsA Cell division 91.5 1.3 2.8E-05 42.5 9.6 30 200-229 157-186 (187)
103 COG0554 GlpK Glycerol kinase [ 90.6 0.7 1.5E-05 49.9 7.2 80 351-431 374-454 (499)
104 COG3426 Butyrate kinase [Energ 90.6 5.5 0.00012 40.1 12.7 48 375-422 293-344 (358)
105 PRK14101 bifunctional glucokin 90.1 8.1 0.00018 44.9 16.1 23 50-72 15-37 (638)
106 KOG0681 Actin-related protein 89.5 0.31 6.7E-06 52.8 3.5 66 361-426 539-614 (645)
107 PF14450 FtsA: Cell division p 89.4 0.11 2.4E-06 46.1 0.0 22 55-76 1-22 (120)
108 PRK14878 UGMP family protein; 88.9 34 0.00073 36.0 19.1 25 378-402 241-265 (323)
109 PF02541 Ppx-GppA: Ppx/GppA ph 88.2 0.95 2.1E-05 46.8 6.1 73 203-281 75-151 (285)
110 COG5026 Hexokinase [Carbohydra 86.3 5.3 0.00012 42.7 10.1 28 44-71 66-93 (466)
111 TIGR03281 methan_mark_12 putat 85.9 3.9 8.4E-05 41.8 8.5 56 379-436 263-321 (326)
112 PF02543 CmcH_NodU: Carbamoylt 85.8 11 0.00024 40.3 12.5 82 343-429 131-216 (360)
113 PLN02666 5-oxoprolinase 85.7 15 0.00032 45.7 15.1 75 345-422 454-530 (1275)
114 PRK00976 hypothetical protein; 84.2 6.8 0.00015 40.8 9.7 56 378-435 263-320 (326)
115 KOG1385 Nucleoside phosphatase 83.6 5.5 0.00012 42.3 8.7 154 51-255 65-231 (453)
116 PLN02920 pantothenate kinase 1 82.5 8.2 0.00018 41.2 9.6 49 377-425 296-351 (398)
117 TIGR00329 gcp_kae1 metallohydr 81.4 69 0.0015 33.4 16.2 25 378-402 258-282 (305)
118 PRK09585 anmK anhydro-N-acetyl 81.2 7.7 0.00017 41.3 9.0 72 352-426 263-338 (365)
119 PF00370 FGGY_N: FGGY family o 81.0 1.8 3.9E-05 43.5 4.1 20 54-73 1-20 (245)
120 COG1382 GimC Prefoldin, chaper 80.7 36 0.00079 29.8 11.3 78 577-655 25-115 (119)
121 PF03702 UPF0075: Uncharacteri 80.5 5.2 0.00011 42.7 7.4 74 350-426 259-337 (364)
122 TIGR00744 ROK_glcA_fam ROK fam 80.3 78 0.0017 32.9 17.5 68 185-254 57-140 (318)
123 PLN02405 hexokinase 78.5 25 0.00054 39.2 12.2 55 198-253 204-260 (497)
124 PLN02362 hexokinase 78.4 7.2 0.00016 43.5 8.0 32 40-71 82-113 (509)
125 PLN02596 hexokinase-like 78.3 6.2 0.00013 43.7 7.4 33 39-71 82-114 (490)
126 PRK03011 butyrate kinase; Prov 76.7 8.8 0.00019 41.0 7.8 46 378-423 295-344 (358)
127 COG2192 Predicted carbamoyl tr 76.1 1.4E+02 0.003 33.5 19.7 82 343-428 254-337 (555)
128 PLN02914 hexokinase 75.5 31 0.00067 38.4 11.8 62 192-254 198-261 (490)
129 smart00732 YqgFc Likely ribonu 75.1 3.4 7.4E-05 34.7 3.5 19 54-72 2-20 (99)
130 PTZ00107 hexokinase; Provision 71.6 11 0.00023 41.7 7.2 79 347-427 370-460 (464)
131 PRK10939 autoinducer-2 (AI-2) 71.3 3.7 8.1E-05 46.4 3.7 21 53-73 3-23 (520)
132 COG2971 Predicted N-acetylgluc 70.5 1.4E+02 0.0029 30.9 20.8 65 356-427 227-292 (301)
133 PF03630 Fumble: Fumble ; Int 70.3 83 0.0018 33.3 13.1 47 377-423 286-339 (341)
134 PF07318 DUF1464: Protein of u 70.1 15 0.00032 38.6 7.3 71 355-429 241-318 (343)
135 COG2377 Predicted molecular ch 69.9 34 0.00073 36.1 9.8 51 376-426 288-343 (371)
136 PRK09557 fructokinase; Reviewe 69.5 53 0.0011 34.0 11.6 47 378-424 244-299 (301)
137 PF03652 UPF0081: Uncharacteri 68.8 5.7 0.00012 35.9 3.6 22 53-74 1-22 (135)
138 COG0145 HyuA N-methylhydantoin 68.7 5.4 0.00012 46.1 4.2 41 215-255 254-296 (674)
139 COG0533 QRI7 Metal-dependent p 68.2 1.6E+02 0.0035 30.9 17.9 214 160-403 40-286 (342)
140 TIGR03723 bact_gcp putative gl 66.9 1.7E+02 0.0037 30.6 22.8 44 378-421 259-308 (314)
141 TIGR00143 hypF [NiFe] hydrogen 66.3 14 0.00031 43.2 7.1 48 378-425 658-711 (711)
142 TIGR02259 benz_CoA_red_A benzo 62.1 7.5 0.00016 41.5 3.4 22 53-74 2-23 (432)
143 cd06007 R3H_DEXH_helicase R3H 61.3 27 0.00059 26.5 5.4 38 177-216 7-44 (59)
144 TIGR03123 one_C_unchar_1 proba 61.3 8 0.00017 40.4 3.5 31 223-255 116-146 (318)
145 PRK00109 Holliday junction res 60.6 11 0.00023 34.3 3.8 20 53-72 4-23 (138)
146 PTZ00340 O-sialoglycoprotein e 58.8 2.5E+02 0.0054 29.8 20.9 114 161-279 40-163 (345)
147 PRK07058 acetate kinase; Provi 58.4 59 0.0013 35.0 9.3 47 353-403 297-344 (396)
148 COG1940 NagC Transcriptional r 57.6 2.1E+02 0.0045 29.7 13.6 125 49-247 2-143 (314)
149 KOG1369 Hexokinase [Carbohydra 57.0 29 0.00064 38.1 6.9 64 193-257 185-251 (474)
150 COG0816 Predicted endonuclease 55.5 13 0.00028 33.8 3.3 21 53-73 2-22 (141)
151 cd00529 RuvC_resolvase Hollida 55.3 15 0.00033 33.9 4.0 25 55-79 2-28 (154)
152 TIGR02627 rhamnulo_kin rhamnul 54.1 14 0.00031 40.8 4.2 17 56-72 1-17 (454)
153 COG3524 KpsE Capsule polysacch 53.4 2.7E+02 0.0059 28.6 12.5 44 605-648 230-275 (372)
154 PRK00039 ruvC Holliday junctio 53.3 11 0.00024 35.3 2.7 20 53-72 2-21 (164)
155 PRK13310 N-acetyl-D-glucosamin 52.8 2E+02 0.0043 29.7 12.4 48 378-425 245-301 (303)
156 cd02640 R3H_NRF R3H domain of 52.4 50 0.0011 25.2 5.6 41 175-216 5-45 (60)
157 COG4012 Uncharacterized protei 52.4 1E+02 0.0022 31.0 9.0 89 193-289 186-277 (342)
158 PLN02669 xylulokinase 51.4 15 0.00032 41.9 3.8 22 52-73 7-28 (556)
159 PRK09698 D-allose kinase; Prov 50.0 2.1E+02 0.0045 29.5 12.0 40 212-253 104-145 (302)
160 KOG2708 Predicted metalloprote 48.9 1.5E+02 0.0032 29.2 9.4 74 344-422 224-300 (336)
161 PRK09174 F0F1 ATP synthase sub 48.5 2.6E+02 0.0056 27.3 11.4 22 575-596 112-133 (204)
162 PF03646 FlaG: FlaG protein; 48.1 36 0.00077 29.3 4.9 45 516-567 54-99 (107)
163 PF00349 Hexokinase_1: Hexokin 47.3 82 0.0018 30.7 7.8 52 237-290 63-118 (206)
164 TIGR02707 butyr_kinase butyrat 47.0 51 0.0011 35.1 6.8 67 353-422 271-341 (351)
165 PF14574 DUF4445: Domain of un 46.3 78 0.0017 34.4 8.1 59 350-408 55-113 (412)
166 PRK09605 bifunctional UGMP fam 45.8 49 0.0011 37.5 6.9 49 378-426 245-299 (535)
167 PF08735 DUF1786: Putative pyr 45.8 3E+02 0.0065 27.8 11.4 117 154-279 83-207 (254)
168 PRK09343 prefoldin subunit bet 45.0 2E+02 0.0043 25.4 9.2 43 605-648 67-109 (121)
169 PLN03173 chalcone synthase; Pr 42.6 79 0.0017 34.3 7.5 53 354-406 99-152 (391)
170 PF00349 Hexokinase_1: Hexokin 42.5 22 0.00047 34.8 2.9 33 200-232 169-204 (206)
171 PLN03170 chalcone synthase; Pr 42.4 68 0.0015 34.9 7.1 58 350-407 99-157 (401)
172 COG1521 Pantothenate kinase ty 42.3 1E+02 0.0022 31.0 7.7 44 347-390 181-224 (251)
173 KOG0797 Actin-related protein 42.1 9.1 0.0002 41.7 0.2 68 360-428 509-591 (618)
174 PRK13318 pantothenate kinase; 41.8 28 0.0006 35.3 3.7 19 55-73 2-20 (258)
175 PLN03172 chalcone synthase fam 41.7 81 0.0017 34.2 7.5 58 349-406 94-152 (393)
176 PF06160 EzrA: Septation ring 40.5 3.5E+02 0.0076 30.9 12.6 88 554-644 114-207 (560)
177 cd02641 R3H_Smubp-2_like R3H d 39.7 1.2E+02 0.0027 23.0 6.0 42 174-216 4-45 (60)
178 COG1334 FlaG Uncharacterized f 38.7 79 0.0017 27.8 5.4 41 517-564 67-108 (120)
179 PLN02377 3-ketoacyl-CoA syntha 38.6 76 0.0016 35.5 6.7 56 350-405 165-221 (502)
180 PF07865 DUF1652: Protein of u 38.2 1.2E+02 0.0025 24.0 5.8 49 517-566 15-66 (69)
181 PLN02902 pantothenate kinase 38.2 1.7E+02 0.0037 34.8 9.5 50 377-426 345-401 (876)
182 PLN03168 chalcone synthase; Pr 37.6 95 0.0021 33.6 7.2 59 348-406 92-151 (389)
183 PF02075 RuvC: Crossover junct 37.5 19 0.00041 33.2 1.5 18 55-72 1-18 (149)
184 PRK06231 F0F1 ATP synthase sub 37.2 3.9E+02 0.0085 26.0 10.8 73 576-648 108-180 (205)
185 PF03904 DUF334: Domain of unk 36.7 4.2E+02 0.0092 26.1 11.4 14 551-564 39-52 (230)
186 PF13941 MutL: MutL protein 36.0 38 0.00082 37.3 3.8 57 199-255 197-266 (457)
187 cd02646 R3H_G-patch R3H domain 36.0 91 0.002 23.4 4.8 42 172-216 2-43 (58)
188 PF08392 FAE1_CUT1_RppA: FAE1/ 35.6 1.2E+02 0.0025 31.3 6.9 45 361-405 87-132 (290)
189 KOG4552 Vitamin-D-receptor int 35.6 1.7E+02 0.0037 28.1 7.4 116 554-669 56-209 (272)
190 PRK05082 N-acetylmannosamine k 35.5 1.1E+02 0.0025 31.3 7.3 48 378-425 233-287 (291)
191 PRK13320 pantothenate kinase; 35.0 1.1E+02 0.0023 30.8 6.7 21 53-73 2-22 (244)
192 KOG2008 BTK-associated SH3-dom 35.0 5.3E+02 0.011 26.6 12.7 45 605-649 183-233 (426)
193 PRK08868 flagellar protein Fla 34.7 1.1E+02 0.0024 27.9 5.8 44 516-566 88-132 (144)
194 KOG1794 N-Acetylglucosamine ki 34.5 1.1E+02 0.0024 31.3 6.4 50 380-429 265-319 (336)
195 PRK13310 N-acetyl-D-glucosamin 34.3 1.2E+02 0.0027 31.2 7.4 36 211-247 95-133 (303)
196 PRK12408 glucokinase; Provisio 34.2 36 0.00077 36.0 3.2 24 49-72 12-35 (336)
197 PRK00180 acetate kinase A/prop 34.0 1.2E+02 0.0026 32.9 7.1 48 353-403 301-349 (402)
198 TIGR03722 arch_KAE1 universal 33.8 5.7E+02 0.012 26.7 19.8 42 378-419 242-289 (322)
199 PRK13320 pantothenate kinase; 33.2 44 0.00095 33.6 3.5 25 225-249 102-126 (244)
200 TIGR00250 RNAse_H_YqgF RNAse H 33.1 31 0.00067 30.9 2.2 17 56-72 1-17 (130)
201 KOG3838 Mannose lectin ERGIC-5 32.8 6.4E+02 0.014 27.0 14.0 21 626-646 328-348 (497)
202 COG5185 HEC1 Protein involved 32.7 4.4E+02 0.0095 28.9 10.6 72 554-625 280-364 (622)
203 PRK11637 AmiB activator; Provi 31.9 4.6E+02 0.01 28.7 11.6 68 577-649 66-135 (428)
204 PRK07738 flagellar protein Fla 31.8 1.4E+02 0.003 26.3 5.8 44 517-567 64-108 (117)
205 PRK13326 pantothenate kinase; 31.5 48 0.001 33.7 3.5 22 53-74 6-27 (262)
206 smart00787 Spc7 Spc7 kinetocho 31.3 6.3E+02 0.014 26.4 11.9 81 552-640 201-287 (312)
207 PRK09557 fructokinase; Reviewe 31.1 1.4E+02 0.0031 30.7 7.1 35 212-247 96-133 (301)
208 PLN02854 3-ketoacyl-CoA syntha 30.9 1.1E+02 0.0024 34.4 6.4 45 361-405 192-237 (521)
209 PRK00292 glk glucokinase; Prov 30.8 47 0.001 34.7 3.4 39 210-248 88-139 (316)
210 CHL00118 atpG ATP synthase CF0 30.8 4.3E+02 0.0093 24.3 11.0 14 631-644 133-146 (156)
211 PRK13326 pantothenate kinase; 30.8 1.3E+02 0.0029 30.5 6.5 37 380-425 218-254 (262)
212 COG2433 Uncharacterized conser 30.7 4.3E+02 0.0093 30.0 10.6 60 572-637 447-508 (652)
213 PF02685 Glucokinase: Glucokin 30.6 3.2E+02 0.0069 28.6 9.5 80 210-290 88-182 (316)
214 cd02639 R3H_RRM R3H domain of 29.7 1.1E+02 0.0024 23.4 4.3 29 188-216 17-45 (60)
215 PRK08452 flagellar protein Fla 29.4 1.5E+02 0.0032 26.4 5.7 43 517-566 71-114 (124)
216 PRK13331 pantothenate kinase; 29.4 68 0.0015 32.4 4.1 22 52-73 6-27 (251)
217 cd07313 terB_like_2 tellurium 29.1 2.8E+02 0.006 23.2 7.4 69 549-617 13-82 (104)
218 PF15290 Syntaphilin: Golgi-lo 29.0 3.4E+02 0.0074 27.5 8.6 18 608-625 127-144 (305)
219 PF01765 RRF: Ribosome recycli 28.8 4.4E+02 0.0094 24.6 9.2 59 551-618 86-146 (165)
220 PLN02192 3-ketoacyl-CoA syntha 28.5 1.5E+02 0.0032 33.3 6.9 55 351-405 170-225 (511)
221 COG0554 GlpK Glycerol kinase [ 27.6 54 0.0012 35.9 3.1 21 52-72 4-24 (499)
222 TIGR00016 ackA acetate kinase. 27.3 1.6E+02 0.0035 31.9 6.7 48 353-403 305-353 (404)
223 PRK04778 septation ring format 27.2 8.7E+02 0.019 27.8 13.1 85 554-641 118-208 (569)
224 PRK13324 pantothenate kinase; 27.0 1.8E+02 0.004 29.4 6.8 19 55-73 2-20 (258)
225 PRK13322 pantothenate kinase; 26.7 1.6E+02 0.0035 29.5 6.3 113 225-391 105-219 (246)
226 COG0233 Frr Ribosome recycling 26.6 5.3E+02 0.012 24.7 9.1 63 550-619 105-167 (187)
227 PRK14878 UGMP family protein; 26.5 1.6E+02 0.0036 30.8 6.6 68 353-421 40-113 (323)
228 KOG0102 Molecular chaperones m 26.4 41 0.00088 37.3 2.0 53 624-676 352-408 (640)
229 TIGR03722 arch_KAE1 universal 26.3 1.6E+02 0.0035 30.8 6.5 67 353-420 41-113 (322)
230 PRK01433 hscA chaperone protei 26.2 3.8E+02 0.0083 30.9 10.0 19 578-596 534-552 (595)
231 PRK13454 F0F1 ATP synthase sub 25.5 5.8E+02 0.013 24.2 11.0 19 631-649 142-160 (181)
232 TIGR00067 glut_race glutamate 24.7 1.4E+02 0.0031 30.0 5.6 41 378-421 172-212 (251)
233 PLN03171 chalcone synthase-lik 24.7 3.3E+02 0.0072 29.5 8.7 58 349-406 100-158 (399)
234 cd04036 C2_cPLA2 C2 domain pre 24.6 3.8E+02 0.0082 23.0 7.7 69 460-533 44-115 (119)
235 PRK07353 F0F1 ATP synthase sub 24.5 5.1E+02 0.011 23.1 11.1 18 578-595 67-84 (140)
236 PF04848 Pox_A22: Poxvirus A22 24.5 87 0.0019 28.6 3.5 20 53-72 1-20 (143)
237 PF08317 Spc7: Spc7 kinetochor 23.8 6.4E+02 0.014 26.4 10.4 80 551-639 205-291 (325)
238 PRK09698 D-allose kinase; Prov 23.8 2E+02 0.0044 29.6 6.7 48 378-425 236-295 (302)
239 PRK00488 pheS phenylalanyl-tRN 23.7 5.9E+02 0.013 27.0 9.9 76 555-638 3-81 (339)
240 PRK14157 heat shock protein Gr 22.9 7E+02 0.015 24.7 9.6 41 583-623 106-146 (227)
241 TIGR01319 glmL_fam conserved h 22.3 44 0.00096 36.6 1.4 57 199-255 193-267 (463)
242 TIGR01069 mutS2 MutS2 family p 22.1 6.5E+02 0.014 30.0 11.0 19 380-398 323-343 (771)
243 PF02801 Ketoacyl-synt_C: Beta 22.1 1E+02 0.0022 26.9 3.5 47 358-404 24-72 (119)
244 COG3679 Regulatory protein inv 21.8 5.6E+02 0.012 22.6 10.8 91 555-647 10-104 (118)
245 TIGR03185 DNA_S_dndD DNA sulfu 21.8 7.1E+02 0.015 29.0 11.3 41 609-649 480-520 (650)
246 COG2605 Predicted kinase relat 21.7 4.3E+02 0.0093 27.3 7.9 19 577-595 219-237 (333)
247 TIGR00329 gcp_kae1 metallohydr 21.7 2.4E+02 0.0052 29.3 6.7 69 352-421 43-117 (305)
248 COG4902 Uncharacterized protei 21.7 4.7E+02 0.01 23.7 7.3 34 614-647 150-183 (189)
249 TIGR01865 cas_Csn1 CRISPR-asso 21.7 71 0.0015 38.1 3.0 20 54-73 2-21 (805)
250 TIGR01219 Pmev_kin_ERG8 phosph 21.6 2.8E+02 0.0061 30.7 7.4 17 552-568 283-299 (454)
251 PRK13324 pantothenate kinase; 21.5 90 0.002 31.6 3.3 13 237-249 124-136 (258)
252 PRK14143 heat shock protein Gr 21.5 8.2E+02 0.018 24.4 11.3 65 582-646 95-164 (238)
253 COG4126 Hydantoin racemase [Am 21.5 2.1E+02 0.0045 28.1 5.5 41 186-232 70-110 (230)
254 COG1521 Pantothenate kinase ty 21.4 96 0.0021 31.3 3.4 19 55-73 2-20 (251)
255 PF01548 DEDD_Tnp_IS110: Trans 21.3 1.3E+02 0.0029 26.9 4.2 20 55-74 1-20 (144)
256 KOG1029 Endocytic adaptor prot 21.2 6.9E+02 0.015 29.3 10.1 44 605-648 563-609 (1118)
257 KOG0103 Molecular chaperones H 21.1 3.3E+02 0.0071 31.5 7.7 40 606-645 671-724 (727)
258 COG2410 Predicted nuclease (RN 20.8 1.5E+02 0.0032 27.7 4.1 32 53-84 1-33 (178)
259 PLN00415 3-ketoacyl-CoA syntha 20.7 2.3E+02 0.0049 31.4 6.4 45 361-405 138-183 (466)
260 TIGR00228 ruvC crossover junct 20.7 62 0.0013 30.0 1.8 18 55-72 1-18 (156)
261 PRK07515 3-oxoacyl-(acyl carri 20.6 1.6E+02 0.0034 31.5 5.3 49 354-404 266-314 (372)
262 PHA02557 22 prohead core prote 20.6 9E+02 0.019 24.5 10.7 77 557-642 143-221 (271)
263 PRK00409 recombination and DNA 20.5 7.3E+02 0.016 29.7 11.0 17 381-397 329-347 (782)
264 PRK00865 glutamate racemase; P 20.2 2E+02 0.0042 29.2 5.5 43 378-423 177-219 (261)
265 PRK14155 heat shock protein Gr 20.2 8.2E+02 0.018 23.9 10.0 41 583-623 42-82 (208)
266 PF03309 Pan_kinase: Type III 20.1 1.2E+02 0.0026 29.4 3.8 20 55-74 1-20 (206)
267 PLN00078 photosystem I reactio 20.1 3.7E+02 0.008 22.8 5.9 15 610-624 107-121 (122)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-136 Score=1010.87 Aligned_cols=594 Identities=53% Similarity=0.852 Sum_probs=572.8
Q ss_pred CCCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC
Q 005807 51 AGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND 130 (676)
Q Consensus 51 ~~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d 130 (676)
....|||||||||||||+++++|.+++|.|.+|+|.+||+|+|+++ ++++|++|+++...||++++++.|||+|+.++|
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d 112 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFND 112 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCC
Confidence 3467999999999999999999999999999999999999999766 999999999999999999999999999999999
Q ss_pred HHHHHHhccCCeEEEeCCCCCeEE--EeC---CeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHH
Q 005807 131 AQTQKEMKMVPFKIVNAPNGDAWV--EAN---GQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQAT 205 (676)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~v--~~~---~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l 205 (676)
+.+|+++++|||++++ .++.+.+ ..+ .+.|+|+++++|+|.++++.|+.|||..++++|+||||||++.||+++
T Consensus 113 ~~vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQAT 191 (663)
T KOG0100|consen 113 KSVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQAT 191 (663)
T ss_pred hhhhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhh
Confidence 9999999999999997 4455554 333 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEeeChhHHHHHhccccCCCC--eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHH
Q 005807 206 KDAGRIAGLDVQRIINEPTAAALSYGMNNKEG--LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLE 283 (676)
Q Consensus 206 ~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~--~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~ 283 (676)
++|..+|||+++++|+||+|||++||++++++ ++||||+||||||+|++.+++|+|+|+++.||.+|||+|||.++++
T Consensus 192 KDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 192 KDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVME 271 (663)
T ss_pred cccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHH
Confidence 99999999999999999999999999998764 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 284 FLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
|+..-|+++++.|++++.+++.+|+.+||++|+.||+..++.+.++.++++ .+++-++||+.||++..+++..+..
T Consensus 272 ~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG----~DfSEtLtRAkFEElNmDLFr~Tlk 347 (663)
T KOG0100|consen 272 YFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDG----VDFSETLTRAKFEELNMDLFRKTLK 347 (663)
T ss_pred HHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecccc----ccccchhhhhHHHHhhhHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999887 8999999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHh-CCCCCCCCCcchhHhhHHHHHhhhccCC--CceeEEEeec
Q 005807 364 PCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVT 440 (676)
Q Consensus 364 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f-g~~~~~~~~p~~aVa~GAal~a~~l~~~--~~~~~~~d~~ 440 (676)
+++++|+++++.+.+|+.|+||||++|||.+|++|+++| |+++...+||++|||+|||.+|+.|+|. ..++++.|++
T Consensus 348 Pv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~ 427 (663)
T KOG0100|consen 348 PVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVN 427 (663)
T ss_pred HHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeec
Confidence 999999999999999999999999999999999999999 7999999999999999999999999994 5789999999
Q ss_pred ccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEE
Q 005807 441 PLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVT 520 (676)
Q Consensus 441 ~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~ 520 (676)
|+++||++.+|.|.++|||||.||+++++.|+|+.|||..+.|.+|+||+++..+|+.||.|.|.||||+|+|.|+|+||
T Consensus 428 pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVt 507 (663)
T KOG0100|consen 428 PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVT 507 (663)
T ss_pred cccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 005807 521 FDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG--- 596 (676)
Q Consensus 521 f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~--- 596 (676)
|++|.||||+|+|.|+.||++.+++|+++ +.||+|+|++|++++++|+++|+..+++.+++|+||+|.|++++.+.
T Consensus 508 FevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dke 587 (663)
T KOG0100|consen 508 FEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKE 587 (663)
T ss_pred EEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchh
Confidence 99999999999999999999999999986 77999999999999999999999999999999999999999999994
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHhcC
Q 005807 597 EYREKIPGEVAKEIEDAVSDLRKAMAGED---IDGIKAKLDAANKAVSKIGQHMAGG 650 (676)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~L~~~~~~i~~~~~~~ 650 (676)
.+..++++++++.+..++++..+||+.+. .++++++.++|+.+|.||..++|+.
T Consensus 588 kLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 588 KLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46689999999999999999999999874 9999999999999999999999985
No 2
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-112 Score=873.57 Aligned_cols=607 Identities=70% Similarity=1.045 Sum_probs=590.7
Q ss_pred CCCCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCC
Q 005807 50 PAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFN 129 (676)
Q Consensus 50 ~~~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 129 (676)
.....++|||+||||||++++.+++|.++.|.+|.|.+||+|+|+.++++++|..|+++...||.|+++.-||+|||++.
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 005807 130 DAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAG 209 (676)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa 209 (676)
|++++++++..||+++...+|++|++..|+.++|.++.+++|.+++++|+.|++..+..+|+||||||++.||+++++|.
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 005807 210 RIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288 (676)
Q Consensus 210 ~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 288 (676)
++||++++++++||+|||++|+++++.+ .++|||+||||||++++.+.++.|++.++.||.++||++||..+++|+...
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 9999999999999999999999997765 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHH
Q 005807 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNC 368 (676)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~ 368 (676)
|++..++++.++..++++|++++|++|+.||.....++++|++..+..|+.++++++||.+||+++.+++++.++++.++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceee
Q 005807 369 LKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIET 448 (676)
Q Consensus 369 l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~ 448 (676)
|+++++...+|+.|+||||++|+|.+++.+++.||..+...+||+++||.|||++++.+++.+++++++||+|+++||++
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgiet 423 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIET 423 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCcc
Q 005807 449 LGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGI 528 (676)
Q Consensus 449 ~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~ 528 (676)
.+|.|..+||||+.||+++++.|+++.|+|+.+.|.++|||++++.+|+.+|+|.+.|+||.|+|.|+|+|+|++|+|||
T Consensus 424 lggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI 503 (640)
T KOG0102|consen 424 LGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGI 503 (640)
T ss_pred hhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHH
Q 005807 529 VTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAK 608 (676)
Q Consensus 529 l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~ 608 (676)
++|+|.|+.|||.++++|...++||+.||+.|+++++.+...|+.++++.+.+|..++++++.+..+.++.+.++.+..+
T Consensus 504 ~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~ 583 (640)
T KOG0102|consen 504 GTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECE 583 (640)
T ss_pred eeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc---cCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 005807 609 EIEDAVSDLRKAMA---GEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSA 656 (676)
Q Consensus 609 ~~~~~~~~~~~wl~---~~~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~ 656 (676)
+|...+.++.+.+. ..+.++++.+...|++...++++.+|+.++..+.
T Consensus 584 ~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~~~~ 634 (640)
T KOG0102|consen 584 KLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGAGGE 634 (640)
T ss_pred HHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhcccCC
Confidence 99999999988765 3568999999999999999999999986554333
No 3
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.8e-109 Score=941.92 Aligned_cols=619 Identities=56% Similarity=0.903 Sum_probs=579.7
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.+|.+.++.|..|++.+||+|+|..++++++|..|+.+...+|.++++.+|||||+++.+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 469999999999999999999999999999999999999997777899999999999999999999999999999875
Q ss_pred HHHHhccCCeEEEeCCCCCeEEE--eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
++...+.+||.++.++++.+.+. ..++.++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 196 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGR 196 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45677889999998888887765 4578999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
+|||+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.++++++.|+.++||++||..|++|+.++|
T Consensus 197 ~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f 276 (673)
T PLN03184 197 IAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 276 (673)
T ss_pred HCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876544 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+....++..++.+.|||++|++++.++++++..+|+++|
T Consensus 277 ~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L 356 (673)
T PLN03184 277 KKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENAL 356 (673)
T ss_pred HhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888889999999999999999999999999999887765544557889999999999999999999999999999
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
+++++.+.+|+.|+||||+||+|.|+++|+++||..+...+||++|||.|||++|+.+++.++++.+.|++|++||+++.
T Consensus 357 ~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~slgi~~~ 436 (673)
T PLN03184 357 RDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETL 436 (673)
T ss_pred HHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccccceEEec
Confidence 99999999999999999999999999999999998888899999999999999999999988899999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
++.+.+|||||++||++++++|++..|+|+.+.|.||||++.+..+|..||+|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 437 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL 516 (673)
T PLN03184 437 GGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 516 (673)
T ss_pred CCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.+..|+++..++|....+||++++++++++++++.++|+.++++.+++|++|+|||.+++.|+++.++++++++++
T Consensus 517 ~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~ 596 (673)
T PLN03184 517 SVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEK 596 (673)
T ss_pred EEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHH
Confidence 99999999999999999877789999999999999999999999999999999999999999999987888999999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCCCCC----------CCCCCccccee
Q 005807 610 IEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNS---ASGGSQG----------GDQAPEAEYEE 673 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~---~~g~~~~----------~~~~~~~~~~~ 673 (676)
+.+.++++++||++++.+++++++++|.+.+.++..++|+++|+++ ++|+.+| +|++.||||||
T Consensus 597 l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (673)
T PLN03184 597 VEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDADFTD 673 (673)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCCCCCCCCCCCceeccccCC
Confidence 9999999999999999999999999999999999999996543222 2333332 45557999986
No 4
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.9e-109 Score=939.71 Aligned_cols=620 Identities=66% Similarity=1.034 Sum_probs=584.1
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.+|.++++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++.+|||||+. ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 369999999999999999999999999999999999999997678899999999999999999999999999999 677
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
++...+.+||.++..++|...+..+++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||++|
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 159 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIA 159 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 88889999999999888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
||+++++++||+|||++|+..... .++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.++|+.
T Consensus 160 Gl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 239 (627)
T PRK00290 160 GLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239 (627)
T ss_pred CCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 3999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~ 371 (676)
+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|..++.+.|||++|+++|+|+++++...|+++|++
T Consensus 240 ~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~ 319 (627)
T PRK00290 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKD 319 (627)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888999999999999999999999999999998876654455788999999999999999999999999999999
Q ss_pred cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeeeCC
Q 005807 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 451 (676)
Q Consensus 372 ~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~~~ 451 (676)
+++++.+|+.|+||||+||+|+|++.|++.||.++...+||++|||+|||++|+.+++.++++.+.|++|++||+++.++
T Consensus 320 a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi~~~~~ 399 (627)
T PRK00290 320 AGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGG 399 (627)
T ss_pred cCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEEEecCC
Confidence 99999999999999999999999999999999888899999999999999999999998899999999999999999999
Q ss_pred eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEEE
Q 005807 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531 (676)
Q Consensus 452 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v 531 (676)
.|.+|||+|+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 400 ~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v 479 (627)
T PRK00290 400 VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHV 479 (627)
T ss_pred eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 005807 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611 (676)
Q Consensus 532 ~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 611 (676)
++.+..+++...++|....+||+++++++++++.++.++|++.+++.+++|++|+|+|.+++.|+++.+.+++++|+++.
T Consensus 480 ~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~ 559 (627)
T PRK00290 480 SAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIE 559 (627)
T ss_pred EEEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999988778999999999999999999999999999999999999999999998777899999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CC-CCCCCCCCCCCcccceecCC
Q 005807 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDN--SA-SGGSQGGDQAPEAEYEEVKK 676 (676)
Q Consensus 612 ~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~--~~-~g~~~~~~~~~~~~~~~~~~ 676 (676)
+.|+++++||+.++.+++++++++|++.+.++..++|+++++. ++ +|++ .+.+.+|||||||+
T Consensus 560 ~~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 625 (627)
T PRK00290 560 AAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAK--DDDVVDAEFEEVKD 625 (627)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC--CCccccCceeecCC
Confidence 9999999999998999999999999999999999998643321 11 2222 25668999999985
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=5.4e-109 Score=929.88 Aligned_cols=597 Identities=64% Similarity=1.014 Sum_probs=568.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.++.+++++|..|.+.+||+|+|. ++.+++|..|+.+...+|.++++.+||+||+.++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~-~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFK-GSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEEC-CCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 469999999999999999999999999999999999999996 5578999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEeCCCCCeEEE-eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVE-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRI 211 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~ 211 (676)
+++..+.+||.++.+.++..++. .+++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 99999999999998888887766 45789999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhh
Q 005807 212 AGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFK 290 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~ 290 (676)
|||+++++++||+|||++|+.....+ +++|||+||||||+||+++.++.++++++.|+.++||++||..|++|+.++|+
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~ 265 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFR 265 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999876544 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHH
Q 005807 291 RTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLK 370 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~ 370 (676)
++++.++..+++++.+|+.+||++|+.||....+.+.++.+..+.+|..++.+.|||++|+++++|+++++..+++++|+
T Consensus 266 ~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~ 345 (657)
T PTZ00186 266 KTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMK 345 (657)
T ss_pred hhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998988899999999999999999999999999999887665555567899999999999999999999999999999
Q ss_pred HcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeeeC
Q 005807 371 DANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 450 (676)
Q Consensus 371 ~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~~ 450 (676)
++++++.+|+.|+||||+||||.|+++|+++||.++...+||++|||+|||++|+.+++.++++.+.|++|++|||++.+
T Consensus 346 ~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~~~ 425 (657)
T PTZ00186 346 DAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLG 425 (657)
T ss_pred HcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeeccccccceecC
Confidence 99999999999999999999999999999999988889999999999999999999999888999999999999999999
Q ss_pred CeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEE
Q 005807 451 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVT 530 (676)
Q Consensus 451 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~ 530 (676)
|.|.+|||||++||++++++|++..|||+.+.|+|||||+..+.+|..||+|+|.++||.|+|.++|+|+|++|.||+|+
T Consensus 426 g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~ 505 (657)
T PTZ00186 426 GVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICH 505 (657)
T ss_pred CEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 005807 531 VSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEI 610 (676)
Q Consensus 531 v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 610 (676)
|++.|+.||++..++|....+||+++|++|++++++++++|+.++++.+++|+++.+++.+++.+++. ..+++++++.+
T Consensus 506 V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 584 (657)
T PTZ00186 506 VTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENV 584 (657)
T ss_pred EEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999754 46899999999
Q ss_pred HHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005807 611 EDAVSDLRKAMAGED--IDGIKAKLDAANKAVSKIGQHMAGGS 651 (676)
Q Consensus 611 ~~~~~~~~~wl~~~~--~~~~~~~~~~L~~~~~~i~~~~~~~~ 651 (676)
.+.+..+++||+.++ .+.+++++++|++.+.++..++|+.+
T Consensus 585 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 627 (657)
T PTZ00186 585 KTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQA 627 (657)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999754 59999999999999999999998643
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2.4e-108 Score=932.48 Aligned_cols=598 Identities=68% Similarity=1.063 Sum_probs=574.7
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.++.++++.|..|++.+||+|+|+.++++++|..|+.+...+|.++++.+||+||+.++|+.
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 46999999999999999999999999999999999999999777789999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
++...+.+||.++.++++...+..+++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||++|++||++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 200 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIA 200 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999999888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
||+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.++|++
T Consensus 201 Gl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~ 280 (663)
T PTZ00400 201 GLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280 (663)
T ss_pred CCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999876544 999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~ 371 (676)
+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|..++.+.|||++|+++++|+++++.++|.++|++
T Consensus 281 ~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~ 360 (663)
T PTZ00400 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKD 360 (663)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999988877665555788999999999999999999999999999999
Q ss_pred cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeeeCC
Q 005807 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 451 (676)
Q Consensus 372 ~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~~~ 451 (676)
+++.+.+|+.|+||||+||+|+|+++|++.||.++...+||+++||+|||++|+++++..+++.+.|++|++||+++.+|
T Consensus 361 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~~g 440 (663)
T PTZ00400 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGG 440 (663)
T ss_pred cCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEecCC
Confidence 99999999999999999999999999999999888899999999999999999999998899999999999999999999
Q ss_pred eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEEE
Q 005807 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531 (676)
Q Consensus 452 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v 531 (676)
.|.+|||+|++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 441 ~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v 520 (663)
T PTZ00400 441 VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNI 520 (663)
T ss_pred eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 005807 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611 (676)
Q Consensus 532 ~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 611 (676)
++.+..++++..+.|....+||++++++++++++++.++|++++++.+++|++|+|||.+++.|+++.+.+++++++++.
T Consensus 521 ~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~ 600 (663)
T PTZ00400 521 SAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELK 600 (663)
T ss_pred EEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Confidence 99999999999999988778999999999999999999999999999999999999999999997788899999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005807 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGG 650 (676)
Q Consensus 612 ~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~ 650 (676)
+.++++++||+.++.+++++++++|++.+.++..++|++
T Consensus 601 ~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~l~~k~y~~ 639 (663)
T PTZ00400 601 QKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAYKQ 639 (663)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999864
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3e-107 Score=923.37 Aligned_cols=599 Identities=59% Similarity=0.928 Sum_probs=567.8
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.+|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++.+|||||+.++|+.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 35999999999999999999999999999999999999999777789999999999999999999999999999998864
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
...+.+||.++...++.+.+..+++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++|
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 159 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIA 159 (653)
T ss_pred --HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHc
Confidence 356789999998888887788888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCC--CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKE--GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFK 290 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~--~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~ 290 (676)
||++++|++||+|||++|+..+.. .++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.++|+
T Consensus 160 Gl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~ 239 (653)
T PRK13411 160 GLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQ 239 (653)
T ss_pred CCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986543 389999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHH
Q 005807 291 RTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLK 370 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~ 370 (676)
.+++.++..+++++.+|+.+||++|+.||....+.++++++..+..+..++.+.|||++|++++.|+++++..+|+++|+
T Consensus 240 ~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 319 (653)
T PRK13411 240 QQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALK 319 (653)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999887655445578899999999999999999999999999999
Q ss_pred HcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 371 DANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 371 ~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
++++.+.+|+.|+||||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.+++..+++.+.|++|++||+++.
T Consensus 320 ~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~ 399 (653)
T PRK13411 320 DAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETL 399 (653)
T ss_pred HcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeEEec
Confidence 999999999999999999999999999999997 5678899999999999999999999988999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
++.|.+|||||++||++++++|++..|+|+.+.|.||||++..+.+|..||.|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil 479 (653)
T PRK13411 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGIL 479 (653)
T ss_pred CCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.+..||++..+.|....+||++++++++++++++.++|++++++.+++|++|+|||.+++.|+++.+.+++++|++
T Consensus 480 ~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~ 559 (653)
T PRK13411 480 KVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQR 559 (653)
T ss_pred EEEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999999999998877789999999999999999999999999999999999999999999987788999999999
Q ss_pred HHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005807 610 IEDAVSDLRKAMAGED--IDGIKAKLDAANKAVSKIGQHMAGGSSD 653 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~--~~~~~~~~~~L~~~~~~i~~~~~~~~~~ 653 (676)
+.+.++++++||++++ .+++++++++|++.+.++..++|+++++
T Consensus 560 i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 560 AEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999864 8999999999999999999999975443
No 8
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5.9e-107 Score=922.17 Aligned_cols=619 Identities=50% Similarity=0.791 Sum_probs=574.3
Q ss_pred CCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCH
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDA 131 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~ 131 (676)
...+||||||||||++|++.++.++++.|..|++.+||+|+|. ++++++|..|+.+...+|.++++.+||+||+.++|+
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~-~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEEC-CCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 4569999999999999999999999999999999999999995 557899999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEeCCCCCeEEE--e--CCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHH
Q 005807 132 QTQKEMKMVPFKIVNAPNGDAWVE--A--NGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKD 207 (676)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~v~--~--~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~ 207 (676)
.++...+.+||.++...++...+. . ..+.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 999999999999988888766544 2 347899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeeChhHHHHHhccccCCC---CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHH
Q 005807 208 AGRIAGLDVQRIINEPTAAALSYGMNNKE---GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEF 284 (676)
Q Consensus 208 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~---~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~ 284 (676)
||++|||++++|++||+|||++|+..+.. .++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHH
Confidence 99999999999999999999999986532 389999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhc-cCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 285 LVSEFKRTE-RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 285 l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
+.++|++++ +.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|++++.|+++++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~~~ 317 (653)
T PTZ00009 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNTLQ 317 (653)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHHHH
Confidence 999998776 46777889999999999999999999999999999877665 6889999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCCCCCCcchhHhhHHHHHhhhccCC----CceeEEEe
Q 005807 364 PCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPSKGVNPDEAVALGAAIQGGILRGD----VKELLLLD 438 (676)
Q Consensus 364 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~~~----~~~~~~~d 438 (676)
.|+++|+++++++.+|+.|+||||+||+|+|+++|++.|+ ..+...+||++|||+|||++|+.+++. ++++.+.|
T Consensus 318 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~d 397 (653)
T PTZ00009 318 PVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLD 397 (653)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEe
Confidence 9999999999999999999999999999999999999996 567889999999999999999999873 56899999
Q ss_pred ecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeE
Q 005807 439 VTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIE 518 (676)
Q Consensus 439 ~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~ 518 (676)
++|++||+++.++.+.+|||+|++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+
T Consensus 398 v~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~ 477 (653)
T PTZ00009 398 VTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477 (653)
T ss_pred ecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005807 519 VTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGE 597 (676)
Q Consensus 519 v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~ 597 (676)
|+|++|.||+|+|++.+..|++...+.|... ..|++++++++++++.++.++|+.++++.+++|++|+|||.++++|++
T Consensus 478 v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~ 557 (653)
T PTZ00009 478 VTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQD 557 (653)
T ss_pred EEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 9999999999999999999999988888754 679999999999999999999999999999999999999999999963
Q ss_pred --hhcCCCHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CCCCCCC
Q 005807 598 --YREKIPGEVAKEIEDAVSDLRKAMAGED---IDGIKAKLDAANKAVSKIGQHMAGGSS-------------DNSASGG 659 (676)
Q Consensus 598 --~~~~~~~~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~L~~~~~~i~~~~~~~~~-------------~~~~~g~ 659 (676)
+.+++++++++++.+.++++++||++++ .+++++++++|++.+.++..++|.+++ +++|+|+
T Consensus 558 ~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (653)
T PTZ00009 558 EKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAG 637 (653)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCC
Confidence 7789999999999999999999999763 888999999999999999999986543 2223455
Q ss_pred CCCCCCCCcccceecC
Q 005807 660 SQGGDQAPEAEYEEVK 675 (676)
Q Consensus 660 ~~~~~~~~~~~~~~~~ 675 (676)
.||+|++++|+.|||+
T Consensus 638 ~~~~~~~~~~~~~~~~ 653 (653)
T PTZ00009 638 PAGAGASSGPTVEEVD 653 (653)
T ss_pred CCCCCCCCCCccccCC
Confidence 5556778899999986
No 9
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8.9e-107 Score=916.38 Aligned_cols=595 Identities=52% Similarity=0.863 Sum_probs=564.2
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||+||++.+|.+.++.|..|++.+||+|+|..++++++|..|+.+...+|.++++.+||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 469999999999999999999999999999999999999997778899999999999999999999999999999865
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEe--CCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEA--NGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
++...+.+||.+..+++|.+.+.. .++.++|+++++++|++|++.++.+++.++.++|||||+||++.||++|++||+
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 159 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGR 159 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 555678899999998888877663 568899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
+|||+++++|+||+|||++|+..+..+ ++||||+||||||+|++++.++.++|+++.|+.++||.+||..|++|+.++|
T Consensus 160 ~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f 239 (668)
T PRK13410 160 IAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQF 239 (668)
T ss_pred HcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHH
Confidence 999999999999999999999876544 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
.++++.++..+++++.+|+.+||++|+.||....+.+.++++..+.++..++...|||++|+++|.++++++..+|+++|
T Consensus 240 ~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L 319 (668)
T PRK13410 240 LEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRAL 319 (668)
T ss_pred HhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99898888889999999999999999999999999999998876555567889999999999999999999999999999
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
+++++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++.++++.+.|++|++||+++.
T Consensus 320 ~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~slgie~~ 399 (668)
T PRK13410 320 KDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETI 399 (668)
T ss_pred HHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccccceec
Confidence 99999999999999999999999999999999998889999999999999999999999988999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
+|.|.+|||||++||++++.+|++..|||+.+.|+||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 400 ~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL 479 (668)
T PRK13410 400 GGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGIL 479 (668)
T ss_pred CCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcCCCHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGE----YREKIPGE 605 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~----~~~~~~~~ 605 (676)
+|++.+..||++..++|....+||++++++++++++++.++|+.++++.++||++|+|||.+++.|.+ +..+++++
T Consensus 480 ~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~ 559 (668)
T PRK13410 480 QVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAER 559 (668)
T ss_pred EEEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHH
Confidence 99999999999999999877889999999999999999999999999999999999999999999953 56789999
Q ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 606 VAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 606 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
+|+++...++++++||+.++.+.+++++++|.+.+.++...++.
T Consensus 560 ~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 603 (668)
T PRK13410 560 QRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRA 603 (668)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888877764
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=8.8e-105 Score=901.78 Aligned_cols=616 Identities=58% Similarity=0.923 Sum_probs=575.4
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
+.+||||||||||++|++.+|.+.++.|..|++.+||+|+|..++++++|..|+.+...+|.++++.+||+||+.+.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 369999999999999999999999999999999999999997778899999999999999999999999999999864
Q ss_pred HHHHhccCCeEEEeCCCCCeEEE--eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
+....+.+||.+...++|.+.+. ..+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 159 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGK 159 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 56667789999998888877765 4678899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
.|||+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.++++++.|+.++||++||..|++|+.++|
T Consensus 160 ~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~ 239 (621)
T CHL00094 160 IAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEF 239 (621)
T ss_pred HcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHH
Confidence 999999999999999999999876544 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
+++++.++..+++++.+|+.+||++|+.||....+.+.++.+..+..+..++...|+|++|++++.++++++..+|+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L 319 (621)
T CHL00094 240 KKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENAL 319 (621)
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888889999999999999999999999999999988765444556788999999999999999999999999999
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
+++++.+.+|+.|+||||+||+|.|++.|++.||.++...+||+++||+|||++|+.+++..+++.+.|++|++||+++.
T Consensus 320 ~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lgi~~~ 399 (621)
T CHL00094 320 KDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETL 399 (621)
T ss_pred HHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeeeeecc
Confidence 99999999999999999999999999999999998888999999999999999999999988899999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
++.+.+|||||++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil 479 (621)
T CHL00094 400 GGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGIL 479 (621)
T ss_pred CCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.+..|++...+.|....+||+++++++++++.++.++|+..+++.+++|.+|+|+|.+++.|+++.+.+++++|++
T Consensus 480 ~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~ 559 (621)
T CHL00094 480 SVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEK 559 (621)
T ss_pred EEEEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 99999999999999999877789999999999999999999999999999999999999999999977778899999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccee
Q 005807 610 IEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGSQGGDQAPEAEYEE 673 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 673 (676)
+.+.++++++||+.++.+++++++++|++.+.++..++|.....++ +|.+- +++-+.||.|
T Consensus 560 ~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~kl~~~~~~~~-~~~~~--~~~~~~~~~~ 620 (621)
T CHL00094 560 IENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYSSTSTTD-PASND--DDVIDTDFSE 620 (621)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CCCCc--Cceeeccccc
Confidence 9999999999999999999999999999999999999987322332 44444 3445667755
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.6e-103 Score=892.23 Aligned_cols=593 Identities=66% Similarity=1.019 Sum_probs=564.3
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
.+||||||||||++|++.+|.+.++.|..|++.+||+|+|..++++++|..|+.+...+|.++++.+||+||+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3899999999999999999999999999999999999999877789999999999999999999999999999984 46
Q ss_pred HHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAG 213 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AG 213 (676)
+...+.+||. +..+++...+..+++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 157 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 157 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 7778899999 556778888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeeChhHHHHHhccccC-CC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 214 LDVQRIINEPTAAALSYGMNN-KE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 214 l~~~~li~Ep~AAal~y~~~~-~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
|+++++++||+|||++|+..+ .. .++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|++
T Consensus 158 l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 158 LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999875 33 3999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~ 371 (676)
+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|..++.+.|||++|+++++|+++++..+|+++|++
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~ 317 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKD 317 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888999999999999999999999999999998876655555788999999999999999999999999999999
Q ss_pred cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeeeCC
Q 005807 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 451 (676)
Q Consensus 372 ~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~~~ 451 (676)
+++++.+|+.|+||||+||+|+|++.|++.||.++...+||++|||.|||++|+.+++.++++.+.|++|++||+++.++
T Consensus 318 a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~~~~ 397 (595)
T TIGR02350 318 AGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGG 397 (595)
T ss_pred cCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEecCC
Confidence 99999999999999999999999999999999888899999999999999999999998899999999999999999999
Q ss_pred eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEEE
Q 005807 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531 (676)
Q Consensus 452 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v 531 (676)
.+.+|||+|+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 398 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v 477 (595)
T TIGR02350 398 VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 (595)
T ss_pred ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred EEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 005807 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611 (676)
Q Consensus 532 ~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 611 (676)
++.+..++++..+++....+||+++++++++++.++.++|+.++++.+++|++|+|||.+++.|+++.+.+++++++++.
T Consensus 478 ~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~ 557 (595)
T TIGR02350 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIE 557 (595)
T ss_pred EEEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999999999988788999999999999999999999999999999999999999999997677889999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 612 ~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
+.++++++||+.++.+++++++++|++.+.++..++|+
T Consensus 558 ~~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~~~~~~~ 595 (595)
T TIGR02350 558 KAVAELKEALKGEDVEEIKAKTEELQQALQKLAEAMYQ 595 (595)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988764
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.1e-102 Score=876.65 Aligned_cols=583 Identities=42% Similarity=0.709 Sum_probs=549.5
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQ 134 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~~ 134 (676)
+||||||||||+||++.+|.++++.|..|++.+||+|+|..++++++|..|+.++..+|.++++.+|||||+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999999999999999999999999999998777899999999999999999999999999999877532
Q ss_pred HHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCC
Q 005807 135 KEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGL 214 (676)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl 214 (676)
.+.+||.++..++|.+.+...+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||+.|||
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677899999888888888766668999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhc
Q 005807 215 DVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293 (676)
Q Consensus 215 ~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 293 (676)
+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.+++
T Consensus 158 ~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~---- 233 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQL---- 233 (599)
T ss_pred CceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhh----
Confidence 99999999999999999876544 9999999999999999999999999999999999999999999999999765
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q 005807 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDAN 373 (676)
Q Consensus 294 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~ 373 (676)
+.+...+++.+.+|+.+||++|+.||....+.+.++. .+ .++.+.|||++|+++++|+++++.++|+++|++++
T Consensus 234 ~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g----~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~ 307 (599)
T TIGR01991 234 GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DG----KDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAG 307 (599)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CC----cEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444567888999999999999999999888888764 22 67899999999999999999999999999999999
Q ss_pred CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCC--ceeEEEeecccccceeeeCC
Q 005807 374 ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDV--KELLLLDVTPLSLGIETLGG 451 (676)
Q Consensus 374 ~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~--~~~~~~d~~~~s~gi~~~~~ 451 (676)
+.+.+|+.|+||||+||+|+|+++|++.|+..+..++||++|||.|||++|+.+++.. +++.+.|++|++||+++.+|
T Consensus 308 ~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g 387 (599)
T TIGR01991 308 LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGG 387 (599)
T ss_pred CChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecCC
Confidence 9999999999999999999999999999998888899999999999999999998753 58999999999999999999
Q ss_pred eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEEE
Q 005807 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531 (676)
Q Consensus 452 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v 531 (676)
.|.+|||||++||+++++.|++..|+|+.+.|.|||||+..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 388 ~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V 467 (599)
T TIGR01991 388 LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467 (599)
T ss_pred EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 005807 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611 (676)
Q Consensus 532 ~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 611 (676)
++.++.||++..+.|....++++++++++++++.+++.+|+..++..+++|++|+++|.+++.+.++.+.+++++|+++.
T Consensus 468 ~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (599)
T TIGR01991 468 SAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAID 547 (599)
T ss_pred EEEECCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999999999988778999999999999999999999999999999999999999999997777789999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005807 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGG 650 (676)
Q Consensus 612 ~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~ 650 (676)
..++++++||++++.++++++.++|++.+.++..+++++
T Consensus 548 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 548 AAMEALQKALQGDDADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999888764
No 13
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-104 Score=852.27 Aligned_cols=595 Identities=50% Similarity=0.790 Sum_probs=568.5
Q ss_pred CCCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC
Q 005807 51 AGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND 130 (676)
Q Consensus 51 ~~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d 130 (676)
..+.+||||||||+||++++.++..+++.|..|++.+||+|+|. ++++++|.+|+.+...+|.++++.+||++|+.++|
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~-~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFT-DTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeec-ccccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 34679999999999999999999999999999999999999996 45899999999999999999999999999999999
Q ss_pred HHHHHHhccCCeEEEeCCCCCeEEE----eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHH
Q 005807 131 AQTQKEMKMVPFKIVNAPNGDAWVE----ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATK 206 (676)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~ 206 (676)
+.++..+++|||.+....++.+.+. ...+.++|+++++++|.++++.++.+++..+.++|+|||+||++.||+++.
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~ 163 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATK 163 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHH
Confidence 9999999999999996666666655 234789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeeChhHHHHHhccccCCC--C-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHH
Q 005807 207 DAGRIAGLDVQRIINEPTAAALSYGMNNKE--G-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLE 283 (676)
Q Consensus 207 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~--~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~ 283 (676)
+|+.+|||+++++|+||+|||++|++.++. . +|+|+|+||||||++++.+.+|.+.++++.++.++||++||+.|++
T Consensus 164 ~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 164 DAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 999999999999999999999999987653 2 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 284 FLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
|+..+|+++++.++..+++++.+|+.+||.+|+.||....+.+.++.+.++ .++...++|.+|++++.+++..+..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g----~d~~~~itrarfe~l~~dlf~~~~~ 319 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRSTLE 319 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcc----ccccceeehhhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 7899999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCCCCCCcchhHhhHHHHHhhhccCC----CceeEEEe
Q 005807 364 PCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPSKGVNPDEAVALGAAIQGGILRGD----VKELLLLD 438 (676)
Q Consensus 364 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~~~----~~~~~~~d 438 (676)
++.++|+++.+++.+|+.|+||||++++|.+|+.++++|+ +.+...+||+++||+|||++|+.+++. ..++.++|
T Consensus 320 ~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid 399 (620)
T KOG0101|consen 320 PVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLID 399 (620)
T ss_pred HHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeee
Confidence 9999999999999999999999999999999999999995 667889999999999999999999883 47899999
Q ss_pred ecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeE
Q 005807 439 VTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIE 518 (676)
Q Consensus 439 ~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~ 518 (676)
+.|+++||++.++.|.++|++||++|++++++|+++.|||..+.|.||+||+.++++|.++|.|.|.|+||+|+|+++|+
T Consensus 400 ~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ie 479 (620)
T KOG0101|consen 400 VAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIE 479 (620)
T ss_pred cccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005807 519 VTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGE 597 (676)
Q Consensus 519 v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~ 597 (676)
++|.+|.||+|+|++.|+.|||...++|++. +.||.++|++|..+++.++.+|...+.+.+++|.||+|+|+++..+++
T Consensus 480 vtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~ 559 (620)
T KOG0101|consen 480 VTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVED 559 (620)
T ss_pred EEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999886 679999999999999999999999999999999999999999999986
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHhcC
Q 005807 598 YREKIPGEVAKEIEDAVSDLRKAMAGED---IDGIKAKLDAANKAVSKIGQHMAGG 650 (676)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~L~~~~~~i~~~~~~~ 650 (676)
..++++++++.++.+.++++.+||+.++ .++++++.++|+..|.|++.++|++
T Consensus 560 ~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 560 EKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 6689999999999999999999999976 8999999999999999999999985
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.5e-101 Score=868.31 Aligned_cols=582 Identities=41% Similarity=0.688 Sum_probs=544.9
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||+||++.+|.+++++|..|++.+||+|+|+++ .++||..|+.+...+|.++++.+||+||+.+.+
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 36999999999999999999999999999999999999999755 499999999999999999999999999999876
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
++...+.+||.+....+|.+.+...+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||++|
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 175 (616)
T PRK05183 96 IQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLA 175 (616)
T ss_pred hhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 34556788999988878888887666689999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
||+++++++||+|||++|+.....+ +++|||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.++|+.
T Consensus 176 Gl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~ 255 (616)
T PRK05183 176 GLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAGL 255 (616)
T ss_pred CCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999876544 999999999999999999999999999999999999999999999999987753
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~ 371 (676)
+...+++++.+|+.+||++|+.||....+.+.++.+ ...|||++|++++.|+++++..+++++|++
T Consensus 256 ----~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~efe~l~~~l~~~~~~~i~~~L~~ 321 (616)
T PRK05183 256 ----SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQFNALIAPLVKRTLLACRRALRD 321 (616)
T ss_pred ----CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578889999999999999999998888877421 124999999999999999999999999999
Q ss_pred cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCC--CceeEEEeecccccceeee
Q 005807 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 372 ~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~--~~~~~~~d~~~~s~gi~~~ 449 (676)
+++.+.+|+.|+||||+||+|+|++.|+++||..+...+||++|||+|||++|+.+++. .+++.+.|++|++||+++.
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~~ 401 (616)
T PRK05183 322 AGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETM 401 (616)
T ss_pred cCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccceec
Confidence 99999999999999999999999999999999888889999999999999999999875 4589999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
+|.|.+|||||++||+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 402 ~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil 481 (616)
T PRK05183 402 GGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLL 481 (616)
T ss_pred CCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.++.||++..+.|....+||+++|+++++++++++.+|+..+++.+++|++|.++|.+++.+++..+.+++++|++
T Consensus 482 ~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 561 (616)
T PRK05183 482 SVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAA 561 (616)
T ss_pred EEEEEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999999999999877789999999999999999999999999999999999999999999976667899999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005807 610 IEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGS 651 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~~ 651 (676)
+.+.++++++||+.+|.+.+++++++|++.+.++..++++..
T Consensus 562 ~~~~l~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 603 (616)
T PRK05183 562 IDAAMAALREVAQGDDADAIEAAIKALDKATQEFAARRMDRS 603 (616)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999888743
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.9e-97 Score=828.52 Aligned_cols=556 Identities=35% Similarity=0.559 Sum_probs=500.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC--
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND-- 130 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d-- 130 (676)
..+||||||||||++|++.++.++++.|..|++.+||+|+|.+ +.++||..| +++++||++|+.+++
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~-~~~~vG~~A----------ti~~~KrliG~~~~~~~ 87 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTS-NNFTIGNNK----------GLRSIKRLFGKTLKEIL 87 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcC-CCEEECchh----------hHHHHHHHhCCCchhhc
Confidence 4699999999999999999999999999999999999999964 458999987 789999999999875
Q ss_pred --HHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 005807 131 --AQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDA 208 (676)
Q Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~A 208 (676)
+.+....+. ......+...+..+++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 88 ~~~~~~~~~k~----~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~A 163 (595)
T PRK01433 88 NTPALFSLVKD----YLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLA 163 (595)
T ss_pred cchhhHhhhhh----eeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 322222221 11222334456677889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 005807 209 GRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVS 287 (676)
Q Consensus 209 a~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 287 (676)
|+.|||+++++++||+|||++|+...... ++||||+||||||+|++++.++.++|+++.|+.++||++||.+|++|+..
T Consensus 164 a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~ 243 (595)
T PRK01433 164 AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCN 243 (595)
T ss_pred HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHH
Confidence 99999999999999999999999876543 89999999999999999999999999999999999999999999999998
Q ss_pred HhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHH
Q 005807 288 EFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKN 367 (676)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~ 367 (676)
+|.. ..+.. .+..||++|+.||....... ..+.|||++|+++++|+++++..++++
T Consensus 244 ~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~~~~i~~ 299 (595)
T PRK01433 244 KFDL------PNSID----TLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERTINIAQE 299 (595)
T ss_pred hcCC------CCCHH----HHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 8742 12222 23459999999998764211 268899999999999999999999999
Q ss_pred HHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeeccccccee
Q 005807 368 CLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIE 447 (676)
Q Consensus 368 ~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~ 447 (676)
+|++++ ..+|+.|+||||+||+|+|++.|++.||.++..+.||+++||+|||++|+.+++...++.+.|++|+|||++
T Consensus 300 ~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi~ 377 (595)
T PRK01433 300 CLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGME 377 (595)
T ss_pred HHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccceEEE
Confidence 999998 578999999999999999999999999988888999999999999999999988778899999999999999
Q ss_pred eeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCc
Q 005807 448 TLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANG 527 (676)
Q Consensus 448 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g 527 (676)
+.+|.|.+|||||++||+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.++|.++|+|+|++|.||
T Consensus 378 ~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~G 457 (595)
T PRK01433 378 LYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADG 457 (595)
T ss_pred ecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHH
Q 005807 528 IVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVA 607 (676)
Q Consensus 528 ~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~ 607 (676)
+|+|++.+..||++..+.|....+||++|+++++++++++.++|..+++..+++|+++.+++..++.++++.+.+++++|
T Consensus 458 il~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 537 (595)
T PRK01433 458 ILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEI 537 (595)
T ss_pred cEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 99999999999999999998777899999999999999999999999999999999999999999999877778999999
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH--------HHHHHhc
Q 005807 608 KEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSK--------IGQHMAG 649 (676)
Q Consensus 608 ~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~--------i~~~~~~ 649 (676)
+++.+.++++++||+.+|...+++++++|++.+.+ ++.++|+
T Consensus 538 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 587 (595)
T PRK01433 538 SIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLLK 587 (595)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 99999999999999988877777666666655544 5566664
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-96 Score=812.18 Aligned_cols=573 Identities=62% Similarity=0.926 Sum_probs=546.9
Q ss_pred CCceEEEEcCCceEEEEEEECC-ceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGK-NPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND 130 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~-~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d 130 (676)
...+|||||||||||||+++++ .+.++.|..|.+.+||+|+|..++++++|..|+.++..+|.++++.+||++|+...
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 3579999999999999999988 79999999999999999999877789999999999999999999999999998711
Q ss_pred HHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 131 AQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
.....+..+++.++|+++++++|++|++.++.+++..+.++|||||+||++.||+++++|++
T Consensus 83 ------------------~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~ 144 (579)
T COG0443 83 ------------------GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAAR 144 (579)
T ss_pred ------------------CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHH
Confidence 01134556678999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
+|||+++++++||+|||++|+.+...+ +|+|||+||||||+|++++.++.++++++.|+.++||++||.+|.+|+..+|
T Consensus 145 iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f 224 (579)
T COG0443 145 IAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEF 224 (579)
T ss_pred HcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHh
Confidence 999999999999999999999998665 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
+.+++.++..++.++.+|+.+||++|+.||....+.++++++..+ .++...|+|++||+++.+++.++...+..++
T Consensus 225 ~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~al 300 (579)
T COG0443 225 KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQAL 300 (579)
T ss_pred hccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887655 6788999999999999999999999999999
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
.+++++..+|+.|+||||++|||.|++.++++|+.++...+||+++||.|||++|+.+++..++++++|++|+|+|+++.
T Consensus 301 ~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~~ 380 (579)
T COG0443 301 KDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETL 380 (579)
T ss_pred HHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeeccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
++.+..+|++|+.+|+++...|.+..|+|+.+.+++++||+....+|..+|.|.+.++||.++|.++|+|+|.+|.||++
T Consensus 381 ~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~ 460 (579)
T COG0443 381 GGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGIL 460 (579)
T ss_pred cchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.++.+|+...++|....+|++++|+.|.++++.+++.|+..++..+.+|.++.+++.+++.|.+.. .++++++++
T Consensus 461 ~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 539 (579)
T COG0443 461 NVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEK 539 (579)
T ss_pred EeeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHHH
Confidence 9999999999999999998877999999999999999999999999999999999999999999998776 899999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 610 IEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
+...+.++++|++++ .++++.+.++|+....++.++.|+
T Consensus 540 ~~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 540 IEEAITDLEEALEGE-KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999985 889999999999999999988775
No 17
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.1e-92 Score=807.89 Aligned_cols=591 Identities=47% Similarity=0.775 Sum_probs=537.9
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQ 134 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~~ 134 (676)
|||||||||||+||++.++.++++.|..|++.+||+|+|.++ ++++|..|...+.++|.++++++|+|||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999999654 8999999999999999999999999999999999999
Q ss_pred HHhccCCeEEEeCCCCCeEEE--eCCe--eeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 135 KEMKMVPFKIVNAPNGDAWVE--ANGQ--QYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~v~--~~~~--~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
...+.+||.+..+++|...+. ..+. .++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 999999999999888877765 3454 899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCC--CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKE--GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~--~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 288 (676)
.|||+++++|+||+|||++|+..+.. +++||||+||||+|++++++.++.++++++.++..+||.+||..|++|+.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999887655 3999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCccCHHHHHHHHHHHHHHHHHcCC--CCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHH
Q 005807 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSS--TSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCK 366 (676)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~ 366 (676)
|+.+++.++..+++.+.+|+.+||++|+.||. .....+.++.+..+ + .++.+.|||++|++++.|+++++..+|+
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~--~-~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDD--G-EDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETT--T-EEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--c-cccccccccceecccccccccccccccc
Confidence 99999989888999999999999999999999 45555666555542 2 7899999999999999999999999999
Q ss_pred HHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC--CCceeEEEeeccccc
Q 005807 367 NCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG--DVKELLLLDVTPLSL 444 (676)
Q Consensus 367 ~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~--~~~~~~~~d~~~~s~ 444 (676)
++|++++++..+|+.|+||||+||+|+|++.|++.|+..+..++||++|||+|||++|+.+++ ..+++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999987888999999999999999999988 567889999999999
Q ss_pred ceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEc
Q 005807 445 GIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDID 524 (676)
Q Consensus 445 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d 524 (676)
||+..++.+.+++++|+++|...+..|.+..++|+.+.|.||+|+.....+|..||++.|.++++.+.|.++|+++|++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld 476 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELD 476 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeee
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCH
Q 005807 525 ANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPG 604 (676)
Q Consensus 525 ~~g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~ 604 (676)
.+|+|+|++.+..+++...+.+.....+++++++++.++++++..+|+.++++.+++|++|+++|++++.+++..+.+++
T Consensus 477 ~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~ 556 (602)
T PF00012_consen 477 ENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSE 556 (602)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTH
T ss_pred eeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCH
Confidence 99999999999999999889988776699999999999999999999999999999999999999999999776778888
Q ss_pred HHH-HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 605 EVA-KEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 605 ~~~-~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
+++ +++++..+++.+|.+..+.+++++++++|++...+|..++|+
T Consensus 557 ~~~~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 557 EEKKKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 776 677777777777776667999999999999999999999875
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-82 Score=670.34 Aligned_cols=578 Identities=31% Similarity=0.537 Sum_probs=526.2
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
.++|||||..+|.+|+.+.++.++|.|+.++|.||++|+|. ...+++|.+|+.+...|+.|++..+||++|+.|+||.+
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg-~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFG-PKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeec-cccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 39999999999999999999999999999999999999995 55799999999999999999999999999999999999
Q ss_pred HHHhccCCeEEEeCCCCCeEEE----eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVE----ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAG 209 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa 209 (676)
+.+.+.+|++++.+++|.+.+. .....++|++|++|+|.+|+..+++.+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 9999999999999999988765 455789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEeeChhHHHHHhccccCCC--------CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 005807 210 RIAGLDVQRIINEPTAAALSYGMNNKE--------GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNAL 281 (676)
Q Consensus 210 ~~AGl~~~~li~Ep~AAal~y~~~~~~--------~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 281 (676)
++|||+.+++++|.+|+|++||..+.+ .+|+++|+|.+++.+|++.+..|.++++++.+|.++||.+||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999988532 279999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHH
Q 005807 282 LEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERT 361 (676)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i 361 (676)
.+|++.+|+.++++++..+++++.||+..||+.|+.||.+...++++++++++ .+.+..|+|++||+++.|+++++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~plL~rv 316 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSAPLLERV 316 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeec----chhhhhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999988 78899999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC--CCceeEEEee
Q 005807 362 KAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG--DVKELLLLDV 439 (676)
Q Consensus 362 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~--~~~~~~~~d~ 439 (676)
..++.++|+++++..+||+.|.+|||+||+|.|+++|.++||+++.+++|.++|||+|||+++|++++ +++++.+.|+
T Consensus 317 ~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di 396 (727)
T KOG0103|consen 317 EVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDI 396 (727)
T ss_pred hHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 5789999999
Q ss_pred cccccceeee----C-CeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecC-ccccccccceeEEEEcCCCCCCCC
Q 005807 440 TPLSLGIETL----G-GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGE-REMAADNKALGEFELMGIPPAPRG 513 (676)
Q Consensus 440 ~~~s~gi~~~----~-~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge-~~~~~~~~~lg~~~l~~~~~~~~g 513 (676)
.|+++.+... + +....+||+|.++|.++..||.... .|.+.+++.. ..++.....|+++.+.++.+...|
T Consensus 397 ~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~g 472 (727)
T KOG0103|consen 397 VPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDG 472 (727)
T ss_pred cceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCccc
Confidence 9999988743 2 5557899999999999999988765 4888887766 455545578999999998887774
Q ss_pred -CCeeEEEEEEcCCccEEEEEEe----------------------------cCCC----ceeeEEecc--CCCCCHHHHH
Q 005807 514 -IPQIEVTFDIDANGIVTVSAKD----------------------------KATG----KEQQITIRS--SGGLSESEIE 558 (676)
Q Consensus 514 -~~~i~v~f~~d~~g~l~v~~~~----------------------------~~t~----~~~~~~i~~--~~~~~~~~i~ 558 (676)
..++.|...++.+|+++|.-.- +..+ +...+.+.. .++++..+++
T Consensus 473 e~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~ 552 (727)
T KOG0103|consen 473 EFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELE 552 (727)
T ss_pred cccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHH
Confidence 5789999999999999886310 0011 122333433 3579999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCHHHHHHHHHHHHHHHHhhccCC----hHHHHHHH
Q 005807 559 KMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG-EYREKIPGEVAKEIEDAVSDLRKAMAGED----IDGIKAKL 633 (676)
Q Consensus 559 ~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~wl~~~~----~~~~~~~~ 633 (676)
..++.+.+|..+|+...++.++||.+|+|||++|++|. .|.++++++++++|...|+++++|||+++ ...|..++
T Consensus 553 ~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl 632 (727)
T KOG0103|consen 553 LYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKL 632 (727)
T ss_pred HHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 99999999999999999999999999999999999995 68889999999999999999999999875 56666777
Q ss_pred HHHHHHH
Q 005807 634 DAANKAV 640 (676)
Q Consensus 634 ~~L~~~~ 640 (676)
++|+...
T Consensus 633 ~elk~~g 639 (727)
T KOG0103|consen 633 EELKKLG 639 (727)
T ss_pred HHHHhhh
Confidence 7777555
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-71 Score=586.21 Aligned_cols=582 Identities=29% Similarity=0.444 Sum_probs=504.6
Q ss_pred CCceEEEEcCCceEEEEEEECCceE-EEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGKNPK-VIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND 130 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~~~~-vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d 130 (676)
...|++||+||.+++++++++|-|. ++.|...+|++|++|+| .+|+|+||.+|.....++|.+++..++.|+|+...+
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vaf-k~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAF-KGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEe-cCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 4569999999999999999998875 88899999999999999 688999999999999999999999999999999999
Q ss_pred HHHHHHhccCC-eEEEeCC-CCCeEEEeCC-eeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHH
Q 005807 131 AQTQKEMKMVP-FKIVNAP-NGDAWVEANG-QQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKD 207 (676)
Q Consensus 131 ~~~~~~~~~~~-~~~~~~~-~~~~~v~~~~-~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~ 207 (676)
|.+....+.+| |.++.++ .+.+.+...+ ..|+++++++|+|.+.+..|+.+...++.++|||||.||++.||+++.+
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 98888877666 5677665 5566677666 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeeChhHHHHHhccccCCC------CeEEEEeeCCceeEEEEEEEe----------CCeEEEEEecCCCC
Q 005807 208 AGRIAGLDVQRIINEPTAAALSYGMNNKE------GLIAVFDLGGGTFDVSVLEIS----------NGVFEVKATNGDTF 271 (676)
Q Consensus 208 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~------~~vlV~D~GgGT~Dvsv~~~~----------~~~~~v~~~~g~~~ 271 (676)
||++||++++.||+|-+|||+.|+..+.. .+++|||||+|++.++++.+. ...+++++...|..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 99999999999999999999999998522 299999999999999999874 14789999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcc--CCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHH
Q 005807 272 LGGEDFDNALLEFLVSEFKRTER--IDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSK 349 (676)
Q Consensus 272 lGG~~~D~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~ 349 (676)
|||..|.++|.+|+.+.|.+.++ .++..+++++.+|.++|+++|..||.+..+.++++.+.++ .|+...|||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~kvTRe~ 335 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRLKVTREE 335 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhc----cccccceeHHH
Confidence 99999999999999999998775 4677899999999999999999999999999999999988 89999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCCCCCCcchhHhhHHHHHhhhcc
Q 005807 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPSKGVNPDEAVALGAAIQGGILR 428 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~ 428 (676)
||++|.++..++..+|.++|..++++..+|+.|+|.||++|+|.||+.|.++.| .++...+|.|||+++||+++|+.|+
T Consensus 336 fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS 415 (902)
T KOG0104|consen 336 FEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS 415 (902)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999998 4578899999999999999999999
Q ss_pred C--CCceeEEEeecccccceeeeCC--------eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccc
Q 005807 429 G--DVKELLLLDVTPLSLGIETLGG--------IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKA 498 (676)
Q Consensus 429 ~--~~~~~~~~d~~~~s~gi~~~~~--------~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~ 498 (676)
. +++++.+.|.++++|-++..+. .-..+|++|.++|.++..+|+.+.|+ +.+.+-.|.-. ..
T Consensus 416 ksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~n 487 (902)
T KOG0104|consen 416 KSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QN 487 (902)
T ss_pred ccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cC
Confidence 8 4679999999999888765543 22358999999999988888776663 44433322211 22
Q ss_pred eeEEEEcCCCCCC----C---CCCeeEEEEEEcCCccEEEEEEec---------------------CC------------
Q 005807 499 LGEFELMGIPPAP----R---GIPQIEVTFDIDANGIVTVSAKDK---------------------AT------------ 538 (676)
Q Consensus 499 lg~~~l~~~~~~~----~---g~~~i~v~f~~d~~g~l~v~~~~~---------------------~t------------ 538 (676)
+-+|+|.++.... . ....|.++|.+|.+|++.|+..+. +|
T Consensus 488 l~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~ 567 (902)
T KOG0104|consen 488 LTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQ 567 (902)
T ss_pred ccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccc
Confidence 3477777765321 1 134699999999999998875320 00
Q ss_pred -----------Cc--------------------------------------eeeEEeccC----CCCCHHHHHHHHHHHH
Q 005807 539 -----------GK--------------------------------------EQQITIRSS----GGLSESEIEKMVKEAE 565 (676)
Q Consensus 539 -----------~~--------------------------------------~~~~~i~~~----~~~~~~~i~~~~~~~~ 565 (676)
++ .+.+.|+.. ..|++..++.....++
T Consensus 568 ~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~ 647 (902)
T KOG0104|consen 568 EEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLE 647 (902)
T ss_pred hhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHH
Confidence 00 012445432 4589999999999999
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCCCHHHHHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHH
Q 005807 566 LHAQRDQERKTLIDIRNNADTTIYSIEKSLG--EYREKIPGEVAKEIEDAVSDLRKAMAGED----IDGIKAKLDAANKA 639 (676)
Q Consensus 566 ~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~wl~~~~----~~~~~~~~~~L~~~ 639 (676)
.+.+.|+.+.++.++-|+||.|+|.++..|. +|.++.+++++.+|...+..+.+||+.+. .+.+.+++.+|++.
T Consensus 648 d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l 727 (902)
T KOG0104|consen 648 DFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKL 727 (902)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 56788999999999999999999998864 78888999999988
Q ss_pred HHHHHHH
Q 005807 640 VSKIGQH 646 (676)
Q Consensus 640 ~~~i~~~ 646 (676)
+..+..+
T Consensus 728 ~~~~~~R 734 (902)
T KOG0104|consen 728 ETSKNFR 734 (902)
T ss_pred HhhhhHH
Confidence 8776644
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=4.3e-56 Score=480.70 Aligned_cols=338 Identities=27% Similarity=0.381 Sum_probs=290.4
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEc---------------------------------------
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFN--------------------------------------- 94 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~--------------------------------------- 94 (676)
+++|||||||||++|++.++.++++++..|.+.+||+|+|.
T Consensus 1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 37999999999999999999999999999999999999995
Q ss_pred -cCCcEEEcHHHHHhhhhCCCch--HHHhhhhhcCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHH
Q 005807 95 -QKGELLVGTPAKRQAVTNPANT--LFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVL 171 (676)
Q Consensus 95 -~~~~~~~G~~A~~~~~~~p~~~--~~~~K~llg~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L 171 (676)
.+++.++|..|++++..+|.++ +..+|++||...-.+ +....++++++++|
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~--------------------------~~~~~~e~l~a~iL 134 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP--------------------------QQVALFEDLVCAMM 134 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc--------------------------cceeCHHHHHHHHH
Confidence 2456789999999999999988 679999999753111 12234899999999
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeCCCCC-----HHHHHH---HHHHHHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEE
Q 005807 172 TKMKETAESYLGKSVSEAVITVPAYFN-----DAQRQA---TKDAGRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVF 242 (676)
Q Consensus 172 ~~l~~~a~~~l~~~~~~~VITVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~ 242 (676)
++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+.....+ .+|||
T Consensus 135 ~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~ 214 (450)
T PRK11678 135 LHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVV 214 (450)
T ss_pred HHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEE
Confidence 999999999999999999999999998 778766 699999999999999999999999999765444 99999
Q ss_pred eeCCceeEEEEEEEeCC-------eEEEEEecCCCCcchHHHHHHHH-HHHHHHhhh----hccCCC-------------
Q 005807 243 DLGGGTFDVSVLEISNG-------VFEVKATNGDTFLGGEDFDNALL-EFLVSEFKR----TERIDL------------- 297 (676)
Q Consensus 243 D~GgGT~Dvsv~~~~~~-------~~~v~~~~g~~~lGG~~~D~~l~-~~l~~~~~~----~~~~~~------------- 297 (676)
|+||||+|+|++++.++ ..+++++.| ..+||+|||..|+ +++...|+. +.+.++
T Consensus 215 D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~ 293 (450)
T PRK11678 215 DIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293 (450)
T ss_pred EeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhc
Confidence 99999999999998654 468999998 6899999999998 677777742 111110
Q ss_pred ----------------------ccCHHHH------------HHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEE
Q 005807 298 ----------------------SQDKLAL------------QRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNI 343 (676)
Q Consensus 298 ----------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~ 343 (676)
..+++.+ .+|+.+||++|+.||....+.+.++.+. .++..
T Consensus 294 i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~------~~~~~ 367 (450)
T PRK11678 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLAT 367 (450)
T ss_pred cchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC------CCcce
Confidence 0123223 3688999999999999999999888653 34679
Q ss_pred EEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHH
Q 005807 344 TLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 344 ~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~ 423 (676)
.|||++|+++++|+++++..+|+++|+++++. ++.|+||||+|++|.|++.|++.||..+....+|.++||.|+|++
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~ 444 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARW 444 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHH
Confidence 99999999999999999999999999999975 489999999999999999999999877777889999999999999
Q ss_pred hhhc
Q 005807 424 GGIL 427 (676)
Q Consensus 424 a~~l 427 (676)
|..+
T Consensus 445 a~~~ 448 (450)
T PRK11678 445 AQVV 448 (450)
T ss_pred HHhh
Confidence 8753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1e-38 Score=337.88 Aligned_cols=309 Identities=25% Similarity=0.358 Sum_probs=238.5
Q ss_pred EEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC-CcE-EEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-GEL-LVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 56 vGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~-~~~-~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
+||||||++|+++.. ++..++. .||+|+|+.+ +.. .+|..|+......|.+.... +
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------R------- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------c-------
Confidence 899999999999875 4555554 5999999854 344 69999988766666553210 0
Q ss_pred HHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAG 213 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AG 213 (676)
|+ . ++ .+...++...+|+++.+.+..........+|||||++|++.+|+++++|++.||
T Consensus 64 -------pi-----~--------~G-~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 64 -------PL-----R--------DG-VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred -------cC-----C--------CC-eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 10 0 11 233445677778888766543322334479999999999999999999999999
Q ss_pred CCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhh
Q 005807 214 LDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRT 292 (676)
Q Consensus 214 l~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~ 292 (676)
++++.+++||+|||++|+.+...+ .++|||+||||||++++...... ..++.++||.+||+.|.+++..+|+..
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~ 197 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLL 197 (336)
T ss_pred CCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchh
Confidence 999999999999999999865444 79999999999999999875422 356789999999999999999777421
Q ss_pred ccCCCccCHHHHHHHHHHHHHHHHHcCCCC----ceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHH
Q 005807 293 ERIDLSQDKLALQRLRESAEKAKIELSSTS----QTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNC 368 (676)
Q Consensus 293 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~ 368 (676)
.+ ...||++|+.++... ...+.+.. .+........+.|+|++|++++.+.++++.+.|.+.
T Consensus 198 ~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~ 262 (336)
T PRK13928 198 IG-------------ERTAEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSV 262 (336)
T ss_pred cC-------------HHHHHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 257999999987542 12222211 111111455789999999999999999999999999
Q ss_pred HHHcC--CCcCCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 369 LKDAN--ITIKDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 369 l~~~~--~~~~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
|+.++ +....++ .|+|+||+|++|.++++|++.|+.++....||+++||+|||+++..+
T Consensus 263 l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 263 LERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 99986 3345677 79999999999999999999999988888999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.2e-38 Score=334.17 Aligned_cols=307 Identities=25% Similarity=0.351 Sum_probs=242.2
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCc--EEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGE--LLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~--~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
.+||||||+|+++ +.+++.. +.| .||+|+++.++. ..+|.+|+.+..++|.++... +-+
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi-------- 66 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPM-------- 66 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecC--------
Confidence 6999999999985 4555554 334 399999975543 579999999888888774331 111
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEEeCCCCCHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVS--EAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~--~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
. +|. +..-++++.+|++++..++.+++..+. .+|||||++|++.||+++.+|++
T Consensus 67 ---------------~--------~G~-I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~ 122 (335)
T PRK13929 67 ---------------K--------DGV-IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVK 122 (335)
T ss_pred ---------------C--------CCc-cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 0 111 223378899999999998888876553 79999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
.||++++.+++||+|||++|+...... .++|+|+||||+|++++...+-. ..++..+||.+||+.|.+++...+
T Consensus 123 ~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~~ 197 (335)
T PRK13929 123 NCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKY 197 (335)
T ss_pred HcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998765444 89999999999999999865432 355678999999999999998765
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCC----ceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTS----QTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPC 365 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i 365 (676)
. .... ...||++|+.++... ...+.+.. .+........+.+++++|++++.+++.++.+.|
T Consensus 198 ~----~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g--~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i 262 (335)
T PRK13929 198 N----LLIG---------ERTAEQVKMEIGYALIEHEPETMEVRG--RDLVTGLPKTITLESKEIQGAMRESLLHILEAI 262 (335)
T ss_pred C----cCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeC--CccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 3 1111 257999999998742 11222211 111111346789999999999999999999999
Q ss_pred HHHHHHcCCC--cCCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHh
Q 005807 366 KNCLKDANIT--IKDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 366 ~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a 424 (676)
.+.|+++... ...++ .|+|+||+|++|.+++++++.|+.++....||+++|+.||+..-
T Consensus 263 ~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 263 RATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999998643 35577 69999999999999999999999988888999999999999863
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=5.5e-36 Score=316.80 Aligned_cols=308 Identities=25% Similarity=0.351 Sum_probs=228.4
Q ss_pred EEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC-----Cc-EEEcHHHHHhhhhCCCchHHHhhhhhcCCCC
Q 005807 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-----GE-LLVGTPAKRQAVTNPANTLFGTKRLIGRRFN 129 (676)
Q Consensus 56 vGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~-----~~-~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 129 (676)
+||||||+||++++.. ...++ ..||+|+|..+ ++ ..+|..|+..+.+.|.+.. +++-+.
T Consensus 5 ~giDlGt~~s~i~~~~--~~~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG--RGIVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECC--CCEEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCC----
Confidence 9999999999998743 23343 26999999744 22 6699999887666665531 122111
Q ss_pred CHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 005807 130 DAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAG 209 (676)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa 209 (676)
++...++ +.+..+++++........+.....+|+|||++|+..+|+++++|+
T Consensus 70 ---------------------------~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 70 ---------------------------DGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred ---------------------------CCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 1222222 334445555554443322222238999999999999999999999
Q ss_pred HHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 005807 210 RIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288 (676)
Q Consensus 210 ~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 288 (676)
+.||++.+.+++||+|||++|+...... .++|||+||||||+++++..+.. ..++.++||++||+.|.+++.++
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~ 196 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRT 196 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765444 88999999999999999876533 24567899999999999999876
Q ss_pred hhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCce-----eeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQT-----EINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-----~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
+. .... +..||++|+.++..... .+.+.. .+..........+++++|.+++.+.++++.+
T Consensus 197 ~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 261 (333)
T TIGR00904 197 YN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPVNQIVE 261 (333)
T ss_pred hc----ccCC---------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 53 1111 25799999999764221 222111 1100112345789999999999999999999
Q ss_pred HHHHHHHHcCCCc-CCC-c-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 364 PCKNCLKDANITI-KDV-D-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 364 ~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
.+.+.++.++... .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.||+++...
T Consensus 262 ~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 262 AVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999876532 233 3 7999999999999999999999998988999999999999998654
No 24
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=5.9e-36 Score=317.19 Aligned_cols=308 Identities=25% Similarity=0.359 Sum_probs=229.9
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC-Cc-EEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-GE-LLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~-~~-~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
.|||||||++++++. .+...++ .+||+|++..+ ++ .++|..|+.+...+|.++.. .+
T Consensus 7 ~igIDlGt~~~~i~~--~~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~--~~---------- 65 (334)
T PRK13927 7 DLGIDLGTANTLVYV--KGKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA--IR---------- 65 (334)
T ss_pred eeEEEcCcceEEEEE--CCCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE--Ee----------
Confidence 699999999999854 3333333 26999999755 33 58999999887666655211 10
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
|+ . +|...+. +.+..+++++......... ....+|+|||++|++.+|+++++|++.|
T Consensus 66 --------pi-----~--------~G~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~a 122 (334)
T PRK13927 66 --------PM-----K--------DGVIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGA 122 (334)
T ss_pred --------cC-----C--------CCeecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 10 0 1122222 3345555665554433321 1248999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
|++.+.+++||+|||++|+...... .++|||+||||||+++++..+.. ..++..+||.+||+.|.+++.+++..
T Consensus 123 g~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~~ 197 (334)
T PRK13927 123 GAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYNL 197 (334)
T ss_pred CCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999865444 78999999999999999876533 24557899999999999999876631
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCc----eeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQ----TEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKN 367 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~ 367 (676)
... ...+|++|+.++.... ..+.+.. .+.....+..+.|+|++|++++.+.++++.+.|.+
T Consensus 198 ----~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~ 262 (334)
T PRK13927 198 ----LIG---------ERTAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLSAIVEAVKV 262 (334)
T ss_pred ----CcC---------HHHHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2468999999886432 2222211 01001134578999999999999999999999999
Q ss_pred HHHHcCCCc--CCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 368 CLKDANITI--KDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 368 ~l~~~~~~~--~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+|++++... ..++ .|+|+||+|++|.++++|++.|+.++....||+++||.||++++..
T Consensus 263 ~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 263 ALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 999986432 2234 5999999999999999999999988888899999999999999765
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.2e-35 Score=309.30 Aligned_cols=309 Identities=25% Similarity=0.346 Sum_probs=233.4
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC-C-cEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-G-ELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~-~-~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
.+||||||++++++++.+ ..++. +||+|++..+ + ..++|..|+......|.+.. +++
T Consensus 10 ~vgiDlGt~~t~i~~~~~--~~~~~-------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~---------- 68 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK--GIVLN-------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AIR---------- 68 (335)
T ss_pred ceEEEcCCCcEEEEECCC--CEEEe-------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Eee----------
Confidence 499999999999988633 23331 5999999642 3 36899999987655554421 110
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
|+ . +|...+ .+....+++++.+.+..........+|+|+|++|+..+|+++.+|++.+
T Consensus 69 --------pi-----~--------~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~ 126 (335)
T PRK13930 69 --------PL-----K--------DGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHA 126 (335)
T ss_pred --------cC-----C--------CCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHc
Confidence 11 1 122222 3457778888876665544444678999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
|++.+.+++||+|||++|+...... .++|||+||||||++++...... ..+...+||.+||+.|.+++.+++.
T Consensus 127 g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~~- 200 (335)
T PRK13930 127 GAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKYN- 200 (335)
T ss_pred CCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHhC-
Confidence 9999999999999999998764433 68999999999999998765432 2456899999999999999987653
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCce----eeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQT----EINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKN 367 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~ 367 (676)
.... ...||++|+.++..... .+.+.. .+........+.|++++|++++.+.++++.+.|.+
T Consensus 201 ---~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~ 266 (335)
T PRK13930 201 ---LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKS 266 (335)
T ss_pred ---CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 25789999999865322 222211 11111133578899999999999999999999999
Q ss_pred HHHHcCCCc--CCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 368 CLKDANITI--KDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 368 ~l~~~~~~~--~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+++.+.... ..++ .|+|+||+|++|.++++|++.|+.++....+|++++|.||++.+..
T Consensus 267 ~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 267 VLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 999875332 2345 4999999999999999999999998888889999999999999765
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=4.9e-32 Score=278.98 Aligned_cols=310 Identities=27% Similarity=0.368 Sum_probs=216.6
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC-c-EEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG-E-LLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~-~-~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
-+||||||+++.++. .+...++. .||+|+++.+. + ..+|.+|+..+.+.|.+...
T Consensus 3 ~igIDLGT~~t~i~~--~~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~-------------- 59 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV--KGKGIVLN-------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV-------------- 59 (326)
T ss_dssp EEEEEE-SSEEEEEE--TTTEEEEE-------EES-EEEETTT--EEEESHHHHTTTTS-GTTEEE--------------
T ss_pred ceEEecCcccEEEEE--CCCCEEEe-------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE--------------
Confidence 689999999999844 33333332 29999997653 3 44999998776666554100
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
.+|. .+| .+.--++...+|+++.+.+.......-.+++|+||+.-++.+|+++.+|+..|
T Consensus 60 ------~~Pl-------------~~G-vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~a 119 (326)
T PF06723_consen 60 ------VRPL-------------KDG-VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQA 119 (326)
T ss_dssp ------E-SE-------------ETT-EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHT
T ss_pred ------Eccc-------------cCC-cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 0010 112 23334677888888888776643334568999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
|...+.++.||.|||+..+.+-... ..||+|+||||||++++...+-.. +.....||++||++|.+|+.++|.-
T Consensus 120 Ga~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~-----s~si~~gG~~~DeaI~~~ir~~y~l 194 (326)
T PF06723_consen 120 GARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA-----SRSIRIGGDDIDEAIIRYIREKYNL 194 (326)
T ss_dssp T-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE-----EEEES-SHHHHHHHHHHHHHHHHSE
T ss_pred CCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE-----EEEEEecCcchhHHHHHHHHHhhCc
Confidence 9999999999999999999886554 889999999999999986443221 3336789999999999999998841
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCce--eeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQT--EINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~--~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
..-...||++|+.++..... ...+.....+...+..-.+.++-+++.+.+.+.+.+|.+.|+++|
T Consensus 195 -------------~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~L 261 (326)
T PF06723_consen 195 -------------LIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVL 261 (326)
T ss_dssp -------------E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12236899999998865321 112222222222235678999999999999999999999999999
Q ss_pred HHcCCCc-CCC--cEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhh
Q 005807 370 KDANITI-KDV--DEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 370 ~~~~~~~-~~i--~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~ 425 (676)
+...... .|| ++|+|+||+|+++.+.++|++.++.++....||.++|+.||.....
T Consensus 262 e~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 262 EKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 9864321 233 6799999999999999999999999999999999999999987654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=2.2e-28 Score=241.23 Aligned_cols=313 Identities=25% Similarity=0.329 Sum_probs=236.8
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC--Cc--EEEcHHHHHhhhhCCCchHHHhhhhhcCCCC
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK--GE--LLVGTPAKRQAVTNPANTLFGTKRLIGRRFN 129 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~--~~--~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 129 (676)
..+||||||.|+.|..- + ..++.|+ ||+|++..+ .. ..+|.+|+..+.+.|.+..
T Consensus 7 ~diGIDLGTanTlV~~k--~-kgIVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~------------ 65 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--G-KGIVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV------------ 65 (342)
T ss_pred ccceeeecccceEEEEc--C-ceEEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCce------------
Confidence 37999999999999764 2 2244443 999999763 22 3489999877666666520
Q ss_pred CHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCCHHHHHHHHHH
Q 005807 130 DAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG-KSVSEAVITVPAYFNDAQRQATKDA 208 (676)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~-~~~~~~VITVPa~~~~~qr~~l~~A 208 (676)
.+.+.. .-.+.--++...+|+|+.+.+...-+ ....+++++||..-++.+|+++++|
T Consensus 66 -------------aiRPmk---------dGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea 123 (342)
T COG1077 66 -------------AIRPMK---------DGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEA 123 (342)
T ss_pred -------------EEeecC---------CcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHH
Confidence 111111 12334456777888888887764333 4455799999999999999999999
Q ss_pred HHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 005807 209 GRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVS 287 (676)
Q Consensus 209 a~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 287 (676)
++.||...+.++.||.|||+..++.-... .-+|||+||||+|++++.+.+-.. +....+||+.||+.+.+|+.+
T Consensus 124 ~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~-----~~Sirv~GD~~De~Ii~yvr~ 198 (342)
T COG1077 124 AESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS-----SSSVRVGGDKMDEAIIVYVRK 198 (342)
T ss_pred HHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE-----EeeEEEecchhhHHHHHHHHH
Confidence 99999999999999999999988775444 579999999999999998876543 445789999999999999999
Q ss_pred HhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCce----eeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 288 EFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQT----EINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
+|+-- .-...+|++|......-.. ...++.-..+.-....-.+.++-+++.+.+++.+++|.+
T Consensus 199 ~~nl~-------------IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Ive 265 (342)
T COG1077 199 KYNLL-------------IGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVE 265 (342)
T ss_pred HhCee-------------ecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHH
Confidence 88622 1225689999987654221 111222111111124457899999999999999999999
Q ss_pred HHHHHHHHcCCC--cCCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 364 PCKNCLKDANIT--IKDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 364 ~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
.++..|+...-. .+-++ .++|+||+|.+..+.+.|++..+.++....+|..|||.|+......+
T Consensus 266 air~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 266 AIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhh
Confidence 999999986432 22244 49999999999999999999999999999999999999998876654
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=3.5e-29 Score=250.41 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCCeEEE
Q 005807 162 SPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAV 241 (676)
Q Consensus 162 ~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV 241 (676)
.--+..+++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+.. ..+|
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----~~~v 112 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----NGAV 112 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----CcEE
Confidence 344688999999999999999999999999999999999999999999999999999999999999998754 3599
Q ss_pred EeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC
Q 005807 242 FDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSST 321 (676)
Q Consensus 242 ~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 321 (676)
+|+||||+|+++++.+...+ ..+..+||++||+.|.+.+. .+ ...||++|+.++.
T Consensus 113 vDiGggtt~i~i~~~G~i~~-----~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~~~~- 167 (239)
T TIGR02529 113 VDVGGGTTGISILKKGKVIY-----SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRGHKD- 167 (239)
T ss_pred EEeCCCcEEEEEEECCeEEE-----EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcCC-
Confidence 99999999999975432222 44678999999998876542 11 2678999986541
Q ss_pred CceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHH
Q 005807 322 SQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEI 401 (676)
Q Consensus 322 ~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~ 401 (676)
.+++.+++.++++++.+.+++.|++. .++.|+|+||+|++|.+++.+++.
T Consensus 168 -------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 168 -------------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 34567899999999999999999864 457999999999999999999999
Q ss_pred hCCCCCCCCCcchhHhhHHHH
Q 005807 402 FGKSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 402 fg~~~~~~~~p~~aVa~GAal 422 (676)
|+.++..+.||++++|.|||+
T Consensus 218 lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 LGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hCCCcccCCCCCeehhheeec
Confidence 999999999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=2.9e-27 Score=240.84 Aligned_cols=202 Identities=26% Similarity=0.382 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEe
Q 005807 164 SQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD 243 (676)
Q Consensus 164 ~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D 243 (676)
.+.....|+++++.++.+++.++..++++||++|+..+++++.+|++.||+++..+++||.|++.+|... ..+|+|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~----~~~vvD 141 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID----NGAVVD 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----CcEEEE
Confidence 4566778899999999999988999999999999999999999999999999999999999999988653 259999
Q ss_pred eCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc
Q 005807 244 LGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ 323 (676)
Q Consensus 244 ~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~ 323 (676)
+||||||+++++ ++.+.. .++..+||.+||+.|.+++.-. ...||++|+.++
T Consensus 142 IGggtt~i~v~~--~g~~~~---~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK~~~~---- 193 (267)
T PRK15080 142 IGGGTTGISILK--DGKVVY---SADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYKRDPK---- 193 (267)
T ss_pred eCCCcEEEEEEE--CCeEEE---EecccCchHHHHHHHHHHhCCC-------------------HHHHHHHHhccC----
Confidence 999999999964 443321 3467999999999998875311 257888887642
Q ss_pred eeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 324 TEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 324 ~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
+++++.++++|+++++.+.+++.++.. +++.|+|+||+|++|.+++.+++.|+
T Consensus 194 ----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg 246 (267)
T PRK15080 194 ----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTG 246 (267)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhC
Confidence 246788999999999999999999863 56899999999999999999999999
Q ss_pred CCCCCCCCcchhHhhHHHHHh
Q 005807 404 KSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 404 ~~~~~~~~p~~aVa~GAal~a 424 (676)
.++..+.+|++++|.|||++|
T Consensus 247 ~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 247 LPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCcccCCCchHHHHHHHHhhC
Confidence 999899999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.90 E-value=6.4e-22 Score=212.52 Aligned_cols=193 Identities=19% Similarity=0.326 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHH
Q 005807 200 AQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFD 278 (676)
Q Consensus 200 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D 278 (676)
...+.+.+|++.|||++..++.||.|+|++|...... ..++|+|+||||||++++.- +.... .....+||++||
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i~~GG~~it 232 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVIPIGGNHIT 232 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEEC--CEEEE---EeeecchHHHHH
Confidence 4467788999999999999999999999998654333 38999999999999999863 33221 344689999999
Q ss_pred HHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC------CceeeeccccccCCCCCeeeEEEEcHHHHHH
Q 005807 279 NALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSST------SQTEINLPFITADASGAKHLNITLTRSKFET 352 (676)
Q Consensus 279 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~ 352 (676)
+.+.+.+. ....+||++|+.++.. ....+.++.+. .+....++|++|++
T Consensus 233 ~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~~~l~~ 287 (371)
T TIGR01174 233 KDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSRKELAE 287 (371)
T ss_pred HHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcHHHHHH
Confidence 98876542 1246799999999864 23445555432 24568999999999
Q ss_pred HHhHHHHHHHHHHH-HHHHHcCCCcCCCcE-EEEEcCCcCcHHHHHHHHHHhCCCCCC------------CCCcchhHhh
Q 005807 353 LVNHLIERTKAPCK-NCLKDANITIKDVDE-VLLVGGMTRVPKVQEIVTEIFGKSPSK------------GVNPDEAVAL 418 (676)
Q Consensus 353 ~~~~~v~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~i~~~l~~~fg~~~~~------------~~~p~~aVa~ 418 (676)
++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+.++.. .-+|..++|.
T Consensus 288 ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~ 366 (371)
T TIGR01174 288 IIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAV 366 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHH
Confidence 99999999999997 999998876 56776 999999999999999999999865321 1278889999
Q ss_pred HHHHH
Q 005807 419 GAAIQ 423 (676)
Q Consensus 419 GAal~ 423 (676)
|.++|
T Consensus 367 Gl~~~ 371 (371)
T TIGR01174 367 GLLLY 371 (371)
T ss_pred HHHhC
Confidence 98864
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.90 E-value=6.4e-22 Score=214.97 Aligned_cols=195 Identities=16% Similarity=0.239 Sum_probs=148.3
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNA 280 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~ 280 (676)
.+.+.+|++.|||++..++.||.|+|.++......+ .++|+|+||||||++++. ++.+. ......+||+++++.
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~it~d 242 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNVVTSD 242 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHHHHHH
Confidence 344467999999999999999999999986654434 899999999999999986 44332 234478999999998
Q ss_pred HHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC------CceeeeccccccCCCCCeeeEEEEcHHHHHHHH
Q 005807 281 LLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSST------SQTEINLPFITADASGAKHLNITLTRSKFETLV 354 (676)
Q Consensus 281 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~ 354 (676)
|...+.- ....||++|+.+... ....+.++.+.. .....+++.+|.+++
T Consensus 243 Ia~~l~i-------------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~------~~~~~i~~~~l~~ii 297 (420)
T PRK09472 243 IAYAFGT-------------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGG------RPPRSLQRQTLAEVI 297 (420)
T ss_pred HHHHhCc-------------------CHHHHHHHHHhcceeccccCCCCceeEecCCCC------CCCeEEcHHHHHHHH
Confidence 8765521 126799999775532 234455553321 123588999999999
Q ss_pred hHHHHHHHHHHHH-------HHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC------------CCCcchh
Q 005807 355 NHLIERTKAPCKN-------CLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK------------GVNPDEA 415 (676)
Q Consensus 355 ~~~v~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~------------~~~p~~a 415 (676)
.+.++++.+.+++ .+.+.++....++.|+|+||+|++|.|++.+++.|+.++.. ..+|..+
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHH
Confidence 9977777776654 45666777677899999999999999999999999865321 2489999
Q ss_pred HhhHHHHHhhh
Q 005807 416 VALGAAIQGGI 426 (676)
Q Consensus 416 Va~GAal~a~~ 426 (676)
++.|.++++..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999773
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.81 E-value=2.4e-18 Score=181.84 Aligned_cols=196 Identities=27% Similarity=0.455 Sum_probs=161.0
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNA 280 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~ 280 (676)
-+.+.+|.+.+||++..++.+|.|+|.+...+...+ .++++|+||||||+++++ ++.+. ..+..++||++++..
T Consensus 167 ~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~--~G~l~---~~~~ipvgG~~vT~D 241 (418)
T COG0849 167 LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYK--NGALR---YTGVIPVGGDHVTKD 241 (418)
T ss_pred HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEE--CCEEE---EEeeEeeCccHHHHH
Confidence 567899999999999999999999999887665555 999999999999999975 44332 245578999999999
Q ss_pred HHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCC------ceeeeccccccCCCCCeeeEEEEcHHHHHHHH
Q 005807 281 LLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTS------QTEINLPFITADASGAKHLNITLTRSKFETLV 354 (676)
Q Consensus 281 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~ 354 (676)
|..-|...+ ..||++|+.+.... ...+.++....+ ....+++..+.+++
T Consensus 242 Ia~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~------~~~~~t~~~ls~II 296 (418)
T COG0849 242 IAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSD------IPRQVTRSELSEII 296 (418)
T ss_pred HHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCc------ccchhhHHHHHHHH
Confidence 998876555 57999999877653 333555544332 36789999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC--C----------CCCcchhHhhHHHH
Q 005807 355 NHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS--K----------GVNPDEAVALGAAI 422 (676)
Q Consensus 355 ~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~--~----------~~~p~~aVa~GAal 422 (676)
++.+.++..+++..|++.+.+..-...|+|+||++.+|.+.+..++.|+.++. . ..+|..+.+.|..+
T Consensus 297 ~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~ 376 (418)
T COG0849 297 EARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLL 376 (418)
T ss_pred HhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHH
Confidence 99999999999999999999766679999999999999999999999975421 1 24689999999999
Q ss_pred Hhhhc
Q 005807 423 QGGIL 427 (676)
Q Consensus 423 ~a~~l 427 (676)
++...
T Consensus 377 ~~~~~ 381 (418)
T COG0849 377 YGALM 381 (418)
T ss_pred HHhhc
Confidence 98853
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.73 E-value=1.2e-16 Score=172.16 Aligned_cols=309 Identities=16% Similarity=0.141 Sum_probs=192.4
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC---------CcEEEcHHHHHhhhhCCCchHHHhhhhhc
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPANTLFGTKRLIG 125 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~p~~~~~~~K~llg 125 (676)
.|.||+||+++++++..++.|.++. ||+++...+ ...++|..|...... ..+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~--------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~---------- 61 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVF--------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-GLE---------- 61 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEe--------eccceeecCcccccccCCCceEEchhhhhCCCC-ceE----------
Confidence 3789999999999998766555432 666665422 356788877542110 000
Q ss_pred CCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHH
Q 005807 126 RRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQAT 205 (676)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l 205 (676)
-.+|+ . +|..... +....+++++...... ....-..+++++|..++..+|+.+
T Consensus 62 ------------~~~P~-----~--------~G~i~d~-~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~ 114 (371)
T cd00012 62 ------------LIYPI-----E--------HGIVVDW-DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKT 114 (371)
T ss_pred ------------Ecccc-----c--------CCEEeCH-HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHH
Confidence 01111 1 1222222 3445666665543211 112245799999999998888888
Q ss_pred HH-HHHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHH
Q 005807 206 KD-AGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEF 284 (676)
Q Consensus 206 ~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~ 284 (676)
.+ +.+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+. +|.... ......++||.++|+.|.++
T Consensus 115 ~e~lfe~~~~~~v~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~i~pv~--~G~~~~-~~~~~~~~GG~~l~~~l~~~ 187 (371)
T cd00012 115 TEIMFETFNVPALYVAIQAVLSLYASGR----TTGLVVDSGDGVTHVVPVY--DGYVLP-HAIKRLDLAGRDLTRYLKEL 187 (371)
T ss_pred HHHhhccCCCCEEEEechHHHHHHhcCC----CeEEEEECCCCeeEEEEEE--CCEEch-hhheeccccHHHHHHHHHHH
Confidence 66 4677999999999999999999875 3679999999999998854 333211 12234689999999999999
Q ss_pred HHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCcee--------eeccccccCCCCCeeeEEEEcHHHH---HHH
Q 005807 285 LVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTE--------INLPFITADASGAKHLNITLTRSKF---ETL 353 (676)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~--------~~i~~~~~~~~g~~~~~~~itr~~f---e~~ 353 (676)
+...... .+. ..-...++.+|+.+....... ...........-+....+.++.+.| |-+
T Consensus 188 l~~~~~~---~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~l 257 (371)
T cd00012 188 LRERGYE---LNS-------SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEIL 257 (371)
T ss_pred HHhcCCC---ccc-------hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhc
Confidence 8654310 011 112345677777654321100 0000000000000122455665544 233
Q ss_pred HhHH-----HHHHHHHHHHHHHHcCCC--cCCCcEEEEEcCCcCcHHHHHHHHHHhCC----------CCCCCCCcchhH
Q 005807 354 VNHL-----IERTKAPCKNCLKDANIT--IKDVDEVLLVGGMTRVPKVQEIVTEIFGK----------SPSKGVNPDEAV 416 (676)
Q Consensus 354 ~~~~-----v~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~i~~~l~~~fg~----------~~~~~~~p~~aV 416 (676)
+.|. ...+.+.|.+++.....+ ..-++.|+|+||+|++|.+.++|++.+.. .+....+|..++
T Consensus 258 F~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~a 337 (371)
T cd00012 258 FNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSV 337 (371)
T ss_pred CChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccE
Confidence 4442 336778888888776432 23368899999999999999999998852 123456889999
Q ss_pred hhHHHHHhhh
Q 005807 417 ALGAAIQGGI 426 (676)
Q Consensus 417 a~GAal~a~~ 426 (676)
-.||+++|..
T Consensus 338 w~G~si~as~ 347 (371)
T cd00012 338 WLGGSILASL 347 (371)
T ss_pred EeCchhhcCc
Confidence 9999999875
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.68 E-value=1.2e-15 Score=164.61 Aligned_cols=298 Identities=17% Similarity=0.199 Sum_probs=186.7
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC--------cEEEcHHHHHhhhhCCCchHHHhhhhhc
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG--------ELLVGTPAKRQAVTNPANTLFGTKRLIG 125 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~--------~~~~G~~A~~~~~~~p~~~~~~~K~llg 125 (676)
..|.||+||.++++++..+..|.++. ||+|+...++ ..++|..|.... ...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVF--------PSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEc--------cceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 37999999999999998776676654 8888875433 245677663211 000
Q ss_pred CCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEeCCCCCHHHHH
Q 005807 126 RRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGK--SVSEAVITVPAYFNDAQRQ 203 (676)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~--~~~~~VITVPa~~~~~qr~ 203 (676)
.-.+|+ . +|. +.--+....+++++... .++. .-..++||.|...+..+|+
T Consensus 61 -----------~~~~P~-----~--------~G~-i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~ 112 (373)
T smart00268 61 -----------ELKYPI-----E--------HGI-VENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNRE 112 (373)
T ss_pred -----------eecCCC-----c--------CCE-EeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHH
Confidence 001121 1 122 22345556666666653 2332 2347899999999999999
Q ss_pred HHHHHH-HHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHH
Q 005807 204 ATKDAG-RIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282 (676)
Q Consensus 204 ~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~ 282 (676)
.+.+.+ +..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+. +|..- .......++||.++|+.|.
T Consensus 113 ~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~v~pv~--~G~~~-~~~~~~~~~GG~~l~~~l~ 185 (373)
T smart00268 113 KILEIMFETFNFPALYIAIQAVLSLYASGR----TTGLVIDSGDGVTHVVPVV--DGYVL-PHAIKRIDIAGRDLTDYLK 185 (373)
T ss_pred HHHHHhhccCCCCeEEEeccHHHHHHhCCC----CEEEEEecCCCcceEEEEE--CCEEc-hhhheeccCcHHHHHHHHH
Confidence 998876 57799999999999999999872 3779999999999999865 33321 1122336899999999999
Q ss_pred HHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc-------------------eeeeccccccCCCCCeeeEE
Q 005807 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ-------------------TEINLPFITADASGAKHLNI 343 (676)
Q Consensus 283 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-------------------~~~~i~~~~~~~~g~~~~~~ 343 (676)
+++...-. .... ..-...++.+|+.+..... ..+.+| +| . .+
T Consensus 186 ~~l~~~~~---~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lp------dg-~--~~ 246 (373)
T smart00268 186 ELLSERGY---QFNS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELP------DG-N--TI 246 (373)
T ss_pred HHHHhcCC---CCCc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECC------CC-C--EE
Confidence 98866210 0010 1122345666665432210 011111 11 1 23
Q ss_pred EEcHHHH---HHHHhHH-----HHHHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhCC--------C
Q 005807 344 TLTRSKF---ETLVNHL-----IERTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFGK--------S 405 (676)
Q Consensus 344 ~itr~~f---e~~~~~~-----v~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~ 405 (676)
.+..+.| |.++.|. ...+.+.|.+++..+..+. .-.+.|+|+||+|++|.+.++|.+.+.. .
T Consensus 247 ~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~ 326 (373)
T smart00268 247 KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVK 326 (373)
T ss_pred EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeE
Confidence 3333332 2333432 2366777777777654321 1246799999999999999999988821 1
Q ss_pred CCCCCCcchhHhhHHHHHhhh
Q 005807 406 PSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 406 ~~~~~~p~~aVa~GAal~a~~ 426 (676)
+..+.++..++=.||+++|..
T Consensus 327 v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 327 VIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred EecCCCCccceEeCcccccCc
Confidence 233456677777888887764
No 35
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.67 E-value=1.8e-16 Score=145.33 Aligned_cols=197 Identities=24% Similarity=0.360 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCce
Q 005807 169 FVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGT 248 (676)
Q Consensus 169 ~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT 248 (676)
.+.+.+++.+++.+|..+++..-++|..-.+...+...+..+.||++++..++||+|||.-..++.. .|+|+||||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg----~VVDiGGGT 151 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG----GVVDIGGGT 151 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC----cEEEeCCCc
Confidence 3568889999999999999999999998877777788888999999999999999999987776655 799999999
Q ss_pred eEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeec
Q 005807 249 FDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINL 328 (676)
Q Consensus 249 ~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i 328 (676)
+-+|+++-.+-.| .-|..-||.++...|+-+ +++++ +++|..|+.-...
T Consensus 152 TGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~------- 200 (277)
T COG4820 152 TGISIVKKGKVIY-----SADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKG------- 200 (277)
T ss_pred ceeEEEEcCcEEE-----eccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccc-------
Confidence 9999987655444 445778888776555433 23322 4677777532111
Q ss_pred cccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC
Q 005807 329 PFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK 408 (676)
Q Consensus 329 ~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~ 408 (676)
++.-..+.|+++++.+.+.+.++..+ +..++|+||+|.-|.+.+..++.|+.++..
T Consensus 201 -------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~ 256 (277)
T COG4820 201 -------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVHL 256 (277)
T ss_pred -------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhcccccc
Confidence 11112468999999999998888744 688999999999999999999999999999
Q ss_pred CCCcchhHhhHHHHHh
Q 005807 409 GVNPDEAVALGAAIQG 424 (676)
Q Consensus 409 ~~~p~~aVa~GAal~a 424 (676)
+..|....-.|-|+-+
T Consensus 257 P~~p~y~TPLgIA~sg 272 (277)
T COG4820 257 PQHPLYMTPLGIASSG 272 (277)
T ss_pred CCCcceechhhhhhcc
Confidence 9999998888877643
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.53 E-value=1.9e-12 Score=136.77 Aligned_cols=204 Identities=16% Similarity=0.227 Sum_probs=136.2
Q ss_pred EEEEeCCCCCHHHH-HHHHHHHHHc------C------CCeEEeeChhHHHHHhccccC---------CCCeEEEEeeCC
Q 005807 189 AVITVPAYFNDAQR-QATKDAGRIA------G------LDVQRIINEPTAAALSYGMNN---------KEGLIAVFDLGG 246 (676)
Q Consensus 189 ~VITVPa~~~~~qr-~~l~~Aa~~A------G------l~~~~li~Ep~AAal~y~~~~---------~~~~vlV~D~Gg 246 (676)
++...|..+-..++ +.+++..... | +..+.+++||.+|.+.+..+. ....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 34589988754443 5666554221 1 244678999999988776542 113789999999
Q ss_pred ceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceee
Q 005807 247 GTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEI 326 (676)
Q Consensus 247 GT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~ 326 (676)
||+|++++. ++.+. ...++....|..++.+.+.+++..+.. +..+. . ..++++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~~--~-------~~ie~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKEE---GASIT--P-------YMLEKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhCC---CCCCC--H-------HHHHHH---HHcC---cE
Confidence 999999975 44432 233444778999999999988864432 22221 1 112222 1111 11
Q ss_pred eccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCC
Q 005807 327 NLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSP 406 (676)
Q Consensus 327 ~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~ 406 (676)
.+. +.. .+.+ ++++.++++++++++...|...+.+ ..+++.|+|+||++++ +++.|++.|+. .
T Consensus 254 ~~~-------~~~--~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~ 316 (344)
T PRK13917 254 KLN-------QKT--VIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-V 316 (344)
T ss_pred EeC-------CCc--eEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-e
Confidence 110 001 1223 4567778899999998888887754 2578999999999987 88999999985 3
Q ss_pred CCCCCcchhHhhHHHHHhhhccCC
Q 005807 407 SKGVNPDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 407 ~~~~~p~~aVa~GAal~a~~l~~~ 430 (676)
....||..|.|+|...+|..+.+.
T Consensus 317 ~~~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 317 EKADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred EEcCChHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999876553
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.53 E-value=1.5e-12 Score=141.95 Aligned_cols=289 Identities=15% Similarity=0.139 Sum_probs=173.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC------------cEEEcHHHHHhhhhCCCchHHHh
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG------------ELLVGTPAKRQAVTNPANTLFGT 120 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~------------~~~~G~~A~~~~~~~p~~~~~~~ 120 (676)
...|.||+||.++++++..+..|.++- ||+|+...++ +.++|++|.... ..
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~----~~----- 66 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYII--------PTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS----KS----- 66 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEe--------cceeEEeccccccccccccccCCEEEcchhhhCc----CC-----
Confidence 347999999999999998766777553 7777663221 234555543210 00
Q ss_pred hhhhcCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEeCCCCC
Q 005807 121 KRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG--KSVSEAVITVPAYFN 198 (676)
Q Consensus 121 K~llg~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~--~~~~~~VITVPa~~~ 198 (676)
+ .-.+|+ .+|...+. +....++.++... .+. ..-..+++|.|..++
T Consensus 67 ---~------------~l~~Pi-------------~~G~I~dw-d~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~ 114 (414)
T PTZ00280 67 ---Y------------TLTYPM-------------KHGIVEDW-DLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNP 114 (414)
T ss_pred ---c------------EEecCc-------------cCCEeCCH-HHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCc
Confidence 0 001111 12233333 4555566664432 222 122358999999999
Q ss_pred HHHHHHHHHHH-HHcCCCeEEeeChhHHHHHhccccCC-----C-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCC
Q 005807 199 DAQRQATKDAG-RIAGLDVQRIINEPTAAALSYGMNNK-----E-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTF 271 (676)
Q Consensus 199 ~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~-----~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~ 271 (676)
..+|+.+.+.+ +..+++.+.+..+|.+|++++..... + .+-+|||+|.|+++++.+. +|..-..+ ....+
T Consensus 115 ~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G~~l~~~-~~~~~ 191 (414)
T PTZ00280 115 PENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DGYVIGSS-IKHIP 191 (414)
T ss_pred HHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CCEEcccc-eEEec
Confidence 99999987765 55599999999999999998733211 1 2669999999999998754 33221111 12358
Q ss_pred cchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCce-------------eeeccccccCCCCC
Q 005807 272 LGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQT-------------EINLPFITADASGA 338 (676)
Q Consensus 272 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-------------~~~i~~~~~~~~g~ 338 (676)
+||.++++.|.++|.++.. .+... .....++.+|+.++..... .....+...+..+.
T Consensus 192 ~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g 261 (414)
T PTZ00280 192 LAGRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTK 261 (414)
T ss_pred CcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCC
Confidence 9999999999998865321 11110 1123466777766532110 00000100111111
Q ss_pred eeeEEEEcHHHHH---HHHhHHH------HHHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 339 KHLNITLTRSKFE---TLVNHLI------ERTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 339 ~~~~~~itr~~fe---~~~~~~v------~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
....+.+..+.|. -++.|-+ ..+.+.|.+.+.++..+. .-.+.|+|+||+|.+|.+.++|++.+.
T Consensus 262 ~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 262 KPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 2345677776663 3455532 145677777777765332 225789999999999999999998885
No 38
>PTZ00452 actin; Provisional
Probab=99.47 E-value=6e-12 Score=134.91 Aligned_cols=304 Identities=17% Similarity=0.179 Sum_probs=183.2
Q ss_pred CCCCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC---------cEEEcHHHHHhhhhCCCchHHHh
Q 005807 50 PAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG---------ELLVGTPAKRQAVTNPANTLFGT 120 (676)
Q Consensus 50 ~~~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~ 120 (676)
+.+...|-||+|+.++++++..+..|.++- ||+|....+. +.++|.+|.... . ...+
T Consensus 2 ~~~~~~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~-----~-~~~l 67 (375)
T PTZ00452 2 QAQYPAVVIDNGSGYCKIGIAGDDAPTSCF--------PAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR-----G-VLAI 67 (375)
T ss_pred CCCCCEEEEECCCCeEEEeeCCCCCcCEEe--------cceeEEECCccccccccccceEEChhhhccc-----c-CcEE
Confidence 345568999999999999998777777543 6666653221 234555543200 0 0000
Q ss_pred hhhhcCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHH
Q 005807 121 KRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDA 200 (676)
Q Consensus 121 K~llg~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~ 200 (676)
+ .|+ .+|...+. +.+..++.|+..... .....-..+++|-|..++..
T Consensus 68 ~------------------~Pi-------------~~G~I~dw-d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~ 114 (375)
T PTZ00452 68 K------------------EPI-------------QNGIINSW-DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKF 114 (375)
T ss_pred c------------------ccC-------------cCCEEcCH-HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHH
Confidence 0 011 12223333 333445555532211 12222356899999999999
Q ss_pred HHHHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 005807 201 QRQATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDN 279 (676)
Q Consensus 201 qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~ 279 (676)
+|+.+.+. .+..+.+.+.+.+.|.+++++++.. +-+|+|+|.+.+.++-+. +|..-..+. ...++||.++++
T Consensus 115 ~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~----tglVVDiG~~~t~v~PV~--dG~~l~~~~-~r~~~gG~~lt~ 187 (375)
T PTZ00452 115 NRERMTQIMFETFNTPCLYISNEAVLSLYTSGKT----IGLVVDSGEGVTHCVPVF--EGHQIPQAI-TKINLAGRLCTD 187 (375)
T ss_pred HHHHHHHHHhhccCCceEEEechHHHHHHHCCCc----eeeeecCCCCcceEEEEE--CCEEeccce-EEeeccchHHHH
Confidence 99998776 4667889999999999999987643 559999999999998753 332222222 225799999999
Q ss_pred HHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc----------------eeeeccccccCCCCCeeeEE
Q 005807 280 ALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ----------------TEINLPFITADASGAKHLNI 343 (676)
Q Consensus 280 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----------------~~~~i~~~~~~~~g~~~~~~ 343 (676)
.|.+.|... +..+.... . ...++.+|+.++.... ....+| ..-.+
T Consensus 188 ~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP---------Dg~~i 248 (375)
T PTZ00452 188 YLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP---------DGNIL 248 (375)
T ss_pred HHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC---------CCCEE
Confidence 998887542 11111110 0 1234556665543211 011111 11245
Q ss_pred EEcHHHH---HHHHhHHH-----HHHHHHHHHHHHHcCCC--cCCCcEEEEEcCCcCcHHHHHHHHHHhCC--------C
Q 005807 344 TLTRSKF---ETLVNHLI-----ERTKAPCKNCLKDANIT--IKDVDEVLLVGGMTRVPKVQEIVTEIFGK--------S 405 (676)
Q Consensus 344 ~itr~~f---e~~~~~~v-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~ 405 (676)
.+..+.| |-+++|-+ ..+.+.|.+++..+..+ ..-.+.|+|+||+|.+|.+.++|++.+.. +
T Consensus 249 ~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~ 328 (375)
T PTZ00452 249 TIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQ 328 (375)
T ss_pred EeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeE
Confidence 6666665 34445533 24667777777776433 22357999999999999999999887731 1
Q ss_pred CCCCCCcchhHhhHHHHHhhh
Q 005807 406 PSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 406 ~~~~~~p~~aVa~GAal~a~~ 426 (676)
+..+.++..++=.|++++|..
T Consensus 329 v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 329 VAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred EecCCCcceeEEECchhhcCc
Confidence 223445666777888888764
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.44 E-value=2.4e-12 Score=139.99 Aligned_cols=312 Identities=19% Similarity=0.231 Sum_probs=180.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC----cEEEcHHHHHhhhhCCCchHHHhhhhhcCCC
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG----ELLVGTPAKRQAVTNPANTLFGTKRLIGRRF 128 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~----~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~ 128 (676)
..+|-||+|+.++++++..+..|.++ +||++....+. ..++|..+... .+.. .+.
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~---~~~------- 62 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSNL---ELR------- 62 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTGE---EEE-------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhhe---eee-------
Confidence 45899999999999999766666644 37887764433 35677764321 0000 000
Q ss_pred CCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 005807 129 NDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDA 208 (676)
Q Consensus 129 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~A 208 (676)
.|+ .++..... +....+++++..... .....-..++++.|..++...|+.+.+.
T Consensus 63 -----------~p~-------------~~g~i~~~-~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~ 116 (393)
T PF00022_consen 63 -----------SPI-------------ENGVIVDW-DALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEI 116 (393)
T ss_dssp -----------ESE-------------ETTEESSH-HHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHH
T ss_pred -----------eec-------------cccccccc-ccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhh
Confidence 011 12222333 344555555554321 1122334799999999999999887666
Q ss_pred -HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 005807 209 -GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVS 287 (676)
Q Consensus 209 -a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 287 (676)
.+..|++.+.++++|.+|+++++.. +-+|||+|.+.+.++.+ -+|.. +........+||.++++.|.++|..
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~----tglVVD~G~~~t~v~pV--~dG~~-~~~~~~~~~~GG~~lt~~l~~lL~~ 189 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRT----TGLVVDIGYSSTSVVPV--VDGYV-LPHSIKRSPIGGDDLTEYLKELLKE 189 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBS----SEEEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHHHHHHHHHHHH
T ss_pred hhcccccceeeeeecccccccccccc----cccccccceeeeeeeee--eeccc-cccccccccccHHHHHHHHHHHHHh
Confidence 4677999999999999999988765 45999999999988875 34332 1111223579999999999999887
Q ss_pred H-hhhh--ccCCCc----cCHHHHHHHHHHHHHHHHHcCCC---------------CceeeeccccccCCCCCeeeEEEE
Q 005807 288 E-FKRT--ERIDLS----QDKLALQRLRESAEKAKIELSST---------------SQTEINLPFITADASGAKHLNITL 345 (676)
Q Consensus 288 ~-~~~~--~~~~~~----~~~~~~~~L~~~~e~~K~~Ls~~---------------~~~~~~i~~~~~~~~g~~~~~~~i 345 (676)
+ +.-. +..... ........-...++.+|+.+... ....+.+|. + ..+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPd------g---~~i~~ 260 (393)
T PF00022_consen 190 RNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPD------G---QTIIL 260 (393)
T ss_dssp T-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TT------S---SEEEE
T ss_pred hccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccccc------c---ccccc
Confidence 4 1100 000000 00000111122344444443211 122222221 1 24556
Q ss_pred cHHHH---HHHHhHHH------------HHHHHHHHHHHHHcCCCcCC--CcEEEEEcCCcCcHHHHHHHHHHhCC----
Q 005807 346 TRSKF---ETLVNHLI------------ERTKAPCKNCLKDANITIKD--VDEVLLVGGMTRVPKVQEIVTEIFGK---- 404 (676)
Q Consensus 346 tr~~f---e~~~~~~v------------~~i~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~i~~~l~~~fg~---- 404 (676)
..+.| |-++.|.. ..+.+.|.+++..+..+... .+.|+|+||+|++|.+.++|...+..
T Consensus 261 ~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~ 340 (393)
T PF00022_consen 261 GKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPS 340 (393)
T ss_dssp STHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhc
Confidence 65554 22333322 15777888888876543211 47999999999999999999887732
Q ss_pred ----CCCCCC-CcchhHhhHHHHHhhhc
Q 005807 405 ----SPSKGV-NPDEAVALGAAIQGGIL 427 (676)
Q Consensus 405 ----~~~~~~-~p~~aVa~GAal~a~~l 427 (676)
++..+. +|..++=.||+++|..-
T Consensus 341 ~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 341 STKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp TSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred cccceeccCchhhhhcccccceeeeccc
Confidence 123344 89999999999998853
No 40
>PTZ00004 actin-2; Provisional
Probab=99.39 E-value=3.9e-11 Score=129.15 Aligned_cols=298 Identities=16% Similarity=0.154 Sum_probs=181.1
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC---------CcEEEcHHHHHhhhhCCCchHHHhhhhh
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPANTLFGTKRLI 124 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~p~~~~~~~K~ll 124 (676)
..|-||+|+.++++++..+..|.++ +||++....+ ...++|..+... ... ..+
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~-~~l---- 68 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDK-----RGI-LTL---- 68 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhcc-----ccc-ceE----
Confidence 4699999999999999877666644 3677665322 124455554321 000 000
Q ss_pred cCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEeCCCCCHHHH
Q 005807 125 GRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG--KSVSEAVITVPAYFNDAQR 202 (676)
Q Consensus 125 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~--~~~~~~VITVPa~~~~~qr 202 (676)
..|+ . +|...+. +....++.++.. ..++ .....+++|-|..++..+|
T Consensus 69 --------------~~Pi-----~--------~G~i~d~-d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r 117 (378)
T PTZ00004 69 --------------KYPI-----E--------HGIVTNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 117 (378)
T ss_pred --------------cccC-----c--------CCEEcCH-HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHH
Confidence 0111 1 2233333 444556665432 2232 2234678999999999999
Q ss_pred HHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 005807 203 QATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNAL 281 (676)
Q Consensus 203 ~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 281 (676)
+.+.+. .+..|++.+.++.+|.+|+++++. .+-+|+|+|.+.++++.+. +|..-..+ ....++||.++++.|
T Consensus 118 ~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----~tglVVDiG~~~t~v~pV~--dG~~l~~~-~~~~~~GG~~lt~~L 190 (378)
T PTZ00004 118 EKMTQIMFETHNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVPIY--EGYSLPHA-IHRLDVAGRDLTEYM 190 (378)
T ss_pred HHHHHHHHhhcCCceEEeeccHHHHHHhcCC----ceEEEEECCCCcEEEEEEE--CCEEeecc-eeeecccHHHHHHHH
Confidence 877665 567899999999999999998764 2569999999999998753 33322222 223579999999999
Q ss_pred HHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCC-----------------ceeeeccccccCCCCCeeeEEE
Q 005807 282 LEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTS-----------------QTEINLPFITADASGAKHLNIT 344 (676)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~~~~~i~~~~~~~~g~~~~~~~ 344 (676)
.+.|...- ..+... .-...++.+|+.+.... ...+.+| ..-.+.
T Consensus 191 ~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP---------dg~~i~ 251 (378)
T PTZ00004 191 MKILHERG-----TTFTTT-----AEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP---------DGTIIT 251 (378)
T ss_pred HHHHHhcC-----CCCCcH-----HHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC---------CCCEEE
Confidence 99875431 111111 01123455665543221 0111111 112345
Q ss_pred EcHHHH---HHHHhHH------HHHHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhCC--------C
Q 005807 345 LTRSKF---ETLVNHL------IERTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFGK--------S 405 (676)
Q Consensus 345 itr~~f---e~~~~~~------v~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~ 405 (676)
+..+.| |-+|+|- ...+.+.|.+++.++..+. .-...|+|+||+|.+|.+.++|+..+.. +
T Consensus 252 l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~ 331 (378)
T PTZ00004 252 VGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIK 331 (378)
T ss_pred EcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEE
Confidence 565554 3455553 2356677778777765332 2257899999999999999999888731 1
Q ss_pred CCCCCCcchhHhhHHHHHhhh
Q 005807 406 PSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 406 ~~~~~~p~~aVa~GAal~a~~ 426 (676)
+..+.++..++=.||+++|..
T Consensus 332 v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 332 VVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred EecCCCCceeEEECcccccCc
Confidence 223456777777888887763
No 41
>PTZ00281 actin; Provisional
Probab=99.37 E-value=3.2e-11 Score=129.65 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=180.3
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC---------cEEEcHHHHHhhhhCCCchHHHhhhhh
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG---------ELLVGTPAKRQAVTNPANTLFGTKRLI 124 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~K~ll 124 (676)
..|-||+|+.++++++..+..|..+ +||+|....++ ..++|+.|.... +. ..+
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~---~~---~~l---- 68 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR---GI---LTL---- 68 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhccc---cC---cEE----
Confidence 3689999999999999877777644 36666542221 234555443200 00 000
Q ss_pred cCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEeCCCCCHHHH
Q 005807 125 GRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGK--SVSEAVITVPAYFNDAQR 202 (676)
Q Consensus 125 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~--~~~~~VITVPa~~~~~qr 202 (676)
..|+ .+|...+. +....++.++.. +.+.. .-..+++|-|..++..+|
T Consensus 69 --------------~~Pi-------------~~G~i~dw-d~~e~l~~~~f~---~~l~v~p~~~pvllte~~~~~~~~r 117 (376)
T PTZ00281 69 --------------KYPI-------------EHGIVTNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 117 (376)
T ss_pred --------------eccC-------------cCCEEcCH-HHHHHHHHHHHH---hhccCCCccCeEEEecCCCCcHHHH
Confidence 0111 12333333 334455555443 22322 234688899999999999
Q ss_pred HHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 005807 203 QATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNAL 281 (676)
Q Consensus 203 ~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 281 (676)
+.+.+. .+..+++.+.+...|.+++++++.. +-+|||+|.+.+.++-+.- |.. +.......++||.++++.|
T Consensus 118 e~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~----tglVVDiG~~~t~v~PV~d--G~~-~~~~~~~~~~GG~~lt~~L 190 (376)
T PTZ00281 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRT----TGIVMDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDYM 190 (376)
T ss_pred HHHHHHHhcccCCceeEeeccHHHHHHhcCCc----eEEEEECCCceEEEEEEEe--ccc-chhheeeccCcHHHHHHHH
Confidence 998774 6778999999999999999987642 5699999999999875432 211 1112223579999999999
Q ss_pred HHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc------------eeeeccccccCCCCCeeeEEEEcHHH
Q 005807 282 LEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ------------TEINLPFITADASGAKHLNITLTRSK 349 (676)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------------~~~~i~~~~~~~~g~~~~~~~itr~~ 349 (676)
.+.|...- ..+... .-...++.+|+.++.... ......+... ..-.+.+..+.
T Consensus 191 ~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LP-----dg~~i~i~~er 255 (376)
T PTZ00281 191 MKILTERG-----YSFTTT-----AEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP-----DGQVITIGNER 255 (376)
T ss_pred HHHHHhcC-----CCCCcH-----HHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECC-----CCCEEEeeHHH
Confidence 98875431 111110 012345667776543210 0000011111 11235555554
Q ss_pred H---HHHHhHHH-----HHHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhCC--------CCCCCCC
Q 005807 350 F---ETLVNHLI-----ERTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFGK--------SPSKGVN 411 (676)
Q Consensus 350 f---e~~~~~~v-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~~~~~~~ 411 (676)
| |-+++|-+ ..+.+.|.+++..+..+. .-.+.|+|+||+|.+|.+.++|+..+.. ++..+.+
T Consensus 256 ~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~ 335 (376)
T PTZ00281 256 FRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE 335 (376)
T ss_pred eeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCC
Confidence 4 44555532 245667777777654321 2247899999999999999999888731 1233456
Q ss_pred cchhHhhHHHHHhhh
Q 005807 412 PDEAVALGAAIQGGI 426 (676)
Q Consensus 412 p~~aVa~GAal~a~~ 426 (676)
+..++=.|++++|..
T Consensus 336 r~~~aW~Ggsilasl 350 (376)
T PTZ00281 336 RKYSVWIGGSILASL 350 (376)
T ss_pred CceeEEECcccccCc
Confidence 777888899888874
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.34 E-value=1e-10 Score=124.99 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhcc-----ccC--CCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCC
Q 005807 198 NDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG-----MNN--KEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGD 269 (676)
Q Consensus 198 ~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~-----~~~--~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~ 269 (676)
.....+.+.++++.||++...+..+|.|.+-.+. ... ... .++++|+|+++++++++.-+...+ ...
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEE
Confidence 3456788899999999999999999999876663 111 123 499999999999999975333232 345
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHH
Q 005807 270 TFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSK 349 (676)
Q Consensus 270 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~ 349 (676)
..+||.++++.+.+.+. .+ ...||+.|....... ..
T Consensus 216 i~~G~~~i~~~i~~~~~--------~~-----------~~~Ae~~k~~~~~~~-----------------~~-------- 251 (348)
T TIGR01175 216 VPFGTRQLTSELSRAYG--------LN-----------PEEAGEAKQQGGLPL-----------------LY-------- 251 (348)
T ss_pred eechHHHHHHHHHHHcC--------CC-----------HHHHHHHHhcCCCCC-----------------ch--------
Confidence 77999999988875432 11 256788876432110 00
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHc--CCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC-------------------
Q 005807 350 FETLVNHLIERTKAPCKNCLKDA--NITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK------------------- 408 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~------------------- 408 (676)
-.+++++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.|+.++..
T Consensus 252 ~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~ 331 (348)
T TIGR01175 252 DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLA 331 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHH
Confidence 02345666666666667766532 222345899999999999999999999999854321
Q ss_pred CCCcchhHhhHHHHHh
Q 005807 409 GVNPDEAVALGAAIQG 424 (676)
Q Consensus 409 ~~~p~~aVa~GAal~a 424 (676)
..+|..++|.|+|+++
T Consensus 332 ~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 332 VDAPALMTALGLALRG 347 (348)
T ss_pred hhhHHHHHHhhHhhcC
Confidence 1345678888888765
No 43
>PTZ00466 actin-like protein; Provisional
Probab=99.33 E-value=1.7e-10 Score=123.88 Aligned_cols=299 Identities=16% Similarity=0.142 Sum_probs=180.2
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC---------CcEEEcHHHHHhhhhCCCchHHHhhhhh
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPANTLFGTKRLI 124 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~p~~~~~~~K~ll 124 (676)
..|-||+|+.++++++..+..|.++ +||+|..... +..++|.+|.... . .+
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~-----~-------~~ 72 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR-----G-------LL 72 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhC-----c-------Cc
Confidence 3688999999999999877677654 2666655321 2334555543210 0 00
Q ss_pred cCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHH
Q 005807 125 GRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQA 204 (676)
Q Consensus 125 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~ 204 (676)
. -.+|+ . +|. +.--+....++.++.+... ....-..+++|-|..++..+|+.
T Consensus 73 ~------------l~~Pi-----~--------~G~-v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~ 124 (380)
T PTZ00466 73 K------------VTYPI-----N--------HGI-IENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEK 124 (380)
T ss_pred e------------eCccc-----c--------CCe-ECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHH
Confidence 0 00111 1 122 2233444555555543211 12223468899999999999999
Q ss_pred HHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHH
Q 005807 205 TKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLE 283 (676)
Q Consensus 205 l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~ 283 (676)
+.+. .+..+++.+.+.++|.+|+++++.. +-+|+|+|.+.+.++-+. +|..-. ......++||.++++.|.+
T Consensus 125 ~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~----tglVVD~G~~~t~v~PV~--~G~~~~-~~~~~~~~GG~~lt~~L~~ 197 (380)
T PTZ00466 125 IAEVFFETFNVPALFISIQAILSLYSCGKT----NGTVLDCGDGVCHCVSIY--EGYSIT-NTITRTDVAGRDITTYLGY 197 (380)
T ss_pred HHHHHhccCCCCeEEEecchHHHHHhcCCc----eEEEEeCCCCceEEEEEE--CCEEee-cceeEecCchhHHHHHHHH
Confidence 7655 5667899999999999999987643 669999999999987643 332211 1222358999999999998
Q ss_pred HHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc---------------eeeeccccccCCCCCeeeEEEEcHH
Q 005807 284 FLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ---------------TEINLPFITADASGAKHLNITLTRS 348 (676)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------------~~~~i~~~~~~~~g~~~~~~~itr~ 348 (676)
.+.+. +..... ..-+..++.+|+.+..... ..+.+| ....+.+..+
T Consensus 198 lL~~~-----~~~~~~-----~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LP---------dg~~i~l~~e 258 (380)
T PTZ00466 198 LLRKN-----GHLFNT-----SAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILP---------DGSQILIGSE 258 (380)
T ss_pred HHHhc-----CCCCCc-----HHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECC---------CCcEEEEchH
Confidence 87542 111110 0112345566665432110 111111 1124556666
Q ss_pred HH---HHHHhHHH-----HHHHHHHHHHHHHcCCC--cCCCcEEEEEcCCcCcHHHHHHHHHHhCC--------CCCCCC
Q 005807 349 KF---ETLVNHLI-----ERTKAPCKNCLKDANIT--IKDVDEVLLVGGMTRVPKVQEIVTEIFGK--------SPSKGV 410 (676)
Q Consensus 349 ~f---e~~~~~~v-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~~~~~~ 410 (676)
.| |-+|+|-+ ..+.+.|.+.+.++..+ ..-...|+|+||+|.+|.+.++|+..+.. .+..+.
T Consensus 259 r~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~ 338 (380)
T PTZ00466 259 RYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPP 338 (380)
T ss_pred HhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCC
Confidence 65 44455432 24566777777765433 22258999999999999999999988731 123345
Q ss_pred CcchhHhhHHHHHhhh
Q 005807 411 NPDEAVALGAAIQGGI 426 (676)
Q Consensus 411 ~p~~aVa~GAal~a~~ 426 (676)
++..++=.|++++|..
T Consensus 339 ~r~~~aW~GgSilasl 354 (380)
T PTZ00466 339 ERKFSTFIGGSILASL 354 (380)
T ss_pred CCceeEEECchhhcCc
Confidence 6667777888888763
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.27 E-value=3.5e-10 Score=118.92 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=127.7
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHc---------CCCeEEeeChhHHHHHhccccC-----CCCeEEEEeeCCceeE
Q 005807 185 SVSEAVITVPAYFNDAQRQATKDAGRIA---------GLDVQRIINEPTAAALSYGMNN-----KEGLIAVFDLGGGTFD 250 (676)
Q Consensus 185 ~~~~~VITVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~AAal~y~~~~-----~~~~vlV~D~GgGT~D 250 (676)
.+..+|+..|..+...+++.+++..... -+..+.+++||.+|.+.+..+. ..+.++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999888999998876532 2355789999999988775432 2238999999999999
Q ss_pred EEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccc
Q 005807 251 VSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPF 330 (676)
Q Consensus 251 vsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~ 330 (676)
+.++ .++.+ +...++....|..++-+.+.+.+.+++. .....+.. .+..+.+.-| ...+
T Consensus 181 ~~~~--~~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~---~i~~~l~~g~-------~~~~---- 239 (320)
T TIGR03739 181 WLVA--RGMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDID---RIDLALRTGK-------QPRI---- 239 (320)
T ss_pred eehc--cCCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHH---HHHHHHHhCC-------ceee----
Confidence 9876 34444 3344555778988888888888877664 22101111 1111111111 0000
Q ss_pred cccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC-CCCC
Q 005807 331 ITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS-PSKG 409 (676)
Q Consensus 331 ~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~-~~~~ 409 (676)
. + . .+.|+ +.-+.....++++...+...+. ...+++.|+|+||++. .+++.|++.|+.. +...
T Consensus 240 -~----g-k--~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~ 303 (320)
T TIGR03739 240 -Y----Q-K--PVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEV 303 (320)
T ss_pred -c----c-e--ecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEec
Confidence 0 0 1 11222 1112333344444433333331 1245899999999986 6789999999863 3457
Q ss_pred CCcchhHhhHHHHHh
Q 005807 410 VNPDEAVALGAAIQG 424 (676)
Q Consensus 410 ~~p~~aVa~GAal~a 424 (676)
.||..|.|+|-..+|
T Consensus 304 ~dp~~ANarG~~~~g 318 (320)
T TIGR03739 304 DEPMFANVRGFQIAG 318 (320)
T ss_pred CCcHHHHHHHHHHhh
Confidence 899999999987765
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.25 E-value=6.4e-11 Score=125.72 Aligned_cols=176 Identities=23% Similarity=0.277 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHcCCCeEEeeChhHHHHHhcccc----C-C--CCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCc
Q 005807 200 AQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN----N-K--EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFL 272 (676)
Q Consensus 200 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~----~-~--~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~l 272 (676)
..-+...++++.|||+...+--+|.|.+-.+... . . .+.++++|+|+.++.+.++. ++.+.. .....+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEEee
Confidence 4566778899999999988877888876555442 1 1 13799999999999999955 444322 334689
Q ss_pred chHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHH
Q 005807 273 GGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFET 352 (676)
Q Consensus 273 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~ 352 (676)
||.++++.+.+.+.-.+ ..+|+.|..-+... +...+
T Consensus 211 G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~-------------------------~~~~~ 246 (340)
T PF11104_consen 211 GGNDLTEAIARELGIDF-------------------EEAEELKRSGGLPE-------------------------EYDQD 246 (340)
T ss_dssp SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT-------------------------------HHH
T ss_pred CHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCCc-------------------------chHHH
Confidence 99999999988754333 45666666421000 22334
Q ss_pred HHhHHHHHHHHHHHHHHHH--cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC---------CCC----------C
Q 005807 353 LVNHLIERTKAPCKNCLKD--ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS---------KGV----------N 411 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~---------~~~----------~ 411 (676)
.+.+.++++...|++.++- .......|+.|+|+||+++++.|.+.|++.|+.++. .+. .
T Consensus 247 ~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~ 326 (340)
T PF11104_consen 247 ALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDA 326 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhh
Confidence 5566666666666666652 222346799999999999999999999999986432 111 3
Q ss_pred cchhHhhHHHHHh
Q 005807 412 PDEAVALGAAIQG 424 (676)
Q Consensus 412 p~~aVa~GAal~a 424 (676)
|..++|.|.|+++
T Consensus 327 ~~~avA~GLAlR~ 339 (340)
T PF11104_consen 327 PQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcC
Confidence 6779999999874
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.12 E-value=9.4e-10 Score=115.36 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=97.2
Q ss_pred CeEEeeChhHHHHHhccccCCC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhc
Q 005807 215 DVQRIINEPTAAALSYGMNNKE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293 (676)
Q Consensus 215 ~~~~li~Ep~AAal~y~~~~~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 293 (676)
..+.+++||.||.+.+...-.+ +.++|+|+||+|+|++++. ++.-.+....+...+|-..+-..+.+.+.....
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~~--- 215 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSAGI--- 215 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT--SB---
T ss_pred eeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHhcC---
Confidence 4578999999999987655333 4899999999999999875 332223334455678998888888877665211
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q 005807 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDAN 373 (676)
Q Consensus 294 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~ 373 (676)
.. +. ..++++-... .....+. ..+ .+ . -..+++.+.++..++++.+.|.+.+.+
T Consensus 216 --~~--s~-------~~~~~ii~~~--~~~~~~~-~~i-~~----~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 216 --DT--SE-------LQIDDIIRNR--KDKGYLR-QVI-ND----E-----DVIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp --HH--HH-------HHHHHHHHTT--T-HHHHH-HHS-SS----H-----HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred --CC--cH-------HHHHHHHHhh--hccceec-ccc-cc----h-----hhHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 00 00 0111110000 0000000 000 00 0 012344455555555555555554432
Q ss_pred CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC---CCCCCCCcchhHhhHHH
Q 005807 374 ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK---SPSKGVNPDEAVALGAA 421 (676)
Q Consensus 374 ~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~---~~~~~~~p~~aVa~GAa 421 (676)
..+++.|+||||++ ..+.+.|++.|+. .+...-||+.|-|+|-+
T Consensus 270 --~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 24678999999996 6788999999973 46678899999999964
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.04 E-value=5.6e-09 Score=105.72 Aligned_cols=169 Identities=16% Similarity=0.199 Sum_probs=104.8
Q ss_pred eeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCc
Q 005807 219 IINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLS 298 (676)
Q Consensus 219 li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~ 298 (676)
.++|-+|-+.+.....+... .|+|+||..+-+..++ ++...-.........|+-.|.+.+.+.+.-.+
T Consensus 74 ~~~ei~~~~~g~~~~~~~~~-~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~~--------- 141 (248)
T TIGR00241 74 IVTEISCHGKGANYLAPEAR-GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVSV--------- 141 (248)
T ss_pred ceEEhhHHHHHHHHHCCCCC-EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCCH---------
Confidence 57788777654433322212 5999999988888876 55443333455566788888887776653222
Q ss_pred cCHHHHHHHHHHHHHHHHHcCC----CCceeeeccc-cccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q 005807 299 QDKLALQRLRESAEKAKIELSS----TSQTEINLPF-ITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDAN 373 (676)
Q Consensus 299 ~~~~~~~~L~~~~e~~K~~Ls~----~~~~~~~i~~-~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~ 373 (676)
++++..+..-.. +....+..+. +.. .+..-.+ .++++..+++.+...+.+.+....
T Consensus 142 ----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~------~l~~g~~---~~di~~~~~~~va~~i~~~~~~~~ 202 (248)
T TIGR00241 142 ----------EELGSLAEKADRKAKISSMCTVFAESELIS------LLAAGVK---KEDILAGVYESIAERVAEMLQRLK 202 (248)
T ss_pred ----------HHHHHHHhcCCCCCCcCCEeEEEechhHHH------HHHCCCC---HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 223333322110 0111111100 000 0000112 245667777777777776665443
Q ss_pred CCcCCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHH
Q 005807 374 ITIKDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 374 ~~~~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~ 423 (676)
++ .|+|+||.+++|++.+.+++.++.++..+.+|..+.|+|||++
T Consensus 203 -----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 -----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred -----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 34 7999999999999999999999999999999999999999973
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=7.6e-08 Score=96.47 Aligned_cols=153 Identities=18% Similarity=0.269 Sum_probs=105.4
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhcccc-----CCCC--eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcch
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGMN-----NKEG--LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGG 274 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~-----~~~~--~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG 274 (676)
-+...+|.+.|||....+--|.-|.--+|... .... .++|+|+|+..+.+.++.-+...| .....+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCcH
Confidence 45567899999999888888888887666522 1122 579999999999999976555444 44578999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHH
Q 005807 275 EDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLV 354 (676)
Q Consensus 275 ~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~ 354 (676)
+++..++.+.+.-.+ ..++.+|....... ++ -.++.
T Consensus 226 ~Qlt~~i~r~~~L~~-------------------~~a~~~k~~~~~P~-----------------~y--------~~~vl 261 (354)
T COG4972 226 DQLTQEIQRAYSLTE-------------------EKAEEIKRGGTLPT-----------------DY--------GSEVL 261 (354)
T ss_pred HHHHHHHHHHhCCCh-------------------hHhHHHHhCCCCCC-----------------ch--------hHHHH
Confidence 999988776542221 34666666433221 11 12334
Q ss_pred hHHHHHHHHHHHHH----HHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC
Q 005807 355 NHLIERTKAPCKNC----LKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS 405 (676)
Q Consensus 355 ~~~v~~i~~~i~~~----l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~ 405 (676)
.+++..+.+.|.+. +...+ ..+|+.|+|.||++.+-.+.+.+.+.++.+
T Consensus 262 ~~f~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 262 RPFLGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 44444444444444 44443 377999999999999999999999998753
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.97 E-value=8.2e-08 Score=97.52 Aligned_cols=182 Identities=16% Similarity=0.190 Sum_probs=118.5
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEc--cC------CcEEEcHHHHHhhhhCCCchHHHhhhhhc
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFN--QK------GELLVGTPAKRQAVTNPANTLFGTKRLIG 125 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~--~~------~~~~~G~~A~~~~~~~p~~~~~~~K~llg 125 (676)
..|-||.|+..+.++|....-|..+. ||++... .+ +..+++..|... |.+
T Consensus 12 ~alViDpGS~~traGyaged~Pk~il--------PS~~G~~tk~~~d~~~~~~~y~~~~ai~~----pr~---------- 69 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAIL--------PSVYGKVTKTDGDAEDKKGYYVDENAIHV----PRP---------- 69 (426)
T ss_pred ceEEEeCCCceEeccccCCCCccccc--------cceeeeeecccCccccccceEeechhccC----CCC----------
Confidence 57899999999999998877777664 7877641 01 123455544321 100
Q ss_pred CCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHH
Q 005807 126 RRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQAT 205 (676)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l 205 (676)
+-+++..+ .+| .+.--+++.+..+|..+.-.+ +.....-++||-|+.=+.+.|+.+
T Consensus 70 ----gmEv~~~i------------------~nG-lv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~ 125 (426)
T KOG0679|consen 70 ----GMEVKTPI------------------KNG-LVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKL 125 (426)
T ss_pred ----CCeeccch------------------hcC-CcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHH
Confidence 00111100 011 122235566666666542221 222234689999998888888887
Q ss_pred HHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHH
Q 005807 206 KDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEF 284 (676)
Q Consensus 206 ~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~ 284 (676)
.+. .+...++...|+.+|+++|++.|.. +.||+|+|++++.++-+ .+|..--.+... ..+||+.++..+.+.
T Consensus 126 ~ElmFE~~nvPAf~L~k~~v~~AFA~Grs----talVvDiGa~~~svsPV--~DG~Vlqk~vvk-s~laGdFl~~~~~q~ 198 (426)
T KOG0679|consen 126 TELMFEKLNVPAFYLAKTAVCTAFANGRS----TALVVDIGATHTSVSPV--HDGYVLQKGVVK-SPLAGDFLNDQCRQL 198 (426)
T ss_pred HHHHHhhcCCceEEEechHHHHHHhcCCC----ceEEEEecCCCceeeee--ecceEeeeeeEe-cccchHHHHHHHHHH
Confidence 665 5777889999999999999987632 67999999999988864 344333333333 689999999999999
Q ss_pred HHHH
Q 005807 285 LVSE 288 (676)
Q Consensus 285 l~~~ 288 (676)
|..+
T Consensus 199 l~~~ 202 (426)
T KOG0679|consen 199 LEPK 202 (426)
T ss_pred Hhhc
Confidence 9876
No 50
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.77 E-value=4.9e-08 Score=103.67 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=57.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH------------cCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEE
Q 005807 187 SEAVITVPAYFNDAQRQATKDAGRI------------AGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVL 254 (676)
Q Consensus 187 ~~~VITVPa~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~ 254 (676)
.-.+||.+.. .++.++++++. ||++...++. |.|++.+...+.++..++++|+||||++++++
T Consensus 89 ~ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLseEke~gVa~IDIGgGTT~iaVf 163 (475)
T PRK10719 89 GAVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSEERNTRVLNIDIGGGTANYALF 163 (475)
T ss_pred cEEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhhhccCceEEEEeCCCceEEEEE
Confidence 4568888765 45556666665 6776666656 99998877654333399999999999999997
Q ss_pred EEeCCeEEEEEecCCCCcchHHHHH
Q 005807 255 EISNGVFEVKATNGDTFLGGEDFDN 279 (676)
Q Consensus 255 ~~~~~~~~v~~~~g~~~lGG~~~D~ 279 (676)
.-..-. ..+..++||+.+..
T Consensus 164 ~~G~l~-----~T~~l~vGG~~IT~ 183 (475)
T PRK10719 164 DAGKVI-----DTACLNVGGRLIET 183 (475)
T ss_pred ECCEEE-----EEEEEecccceEEE
Confidence 643322 24457889987743
No 51
>PRK10331 L-fuculokinase; Provisional
Probab=98.76 E-value=1.2e-06 Score=97.50 Aligned_cols=205 Identities=19% Similarity=0.152 Sum_probs=107.3
Q ss_pred HHHHHHHcCC----CeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEE----------EEEe-cCC
Q 005807 205 TKDAGRIAGL----DVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFE----------VKAT-NGD 269 (676)
Q Consensus 205 l~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~----------v~~~-~g~ 269 (676)
..+++...|| +++.-..+..|++++.+.. .++ +++-+|.+ .+..+........ .... .+.
T Consensus 219 ~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~-~g~--~~~~~GT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (470)
T PRK10331 219 QPSAAALLGLPVGIPVISAGHDTQFALFGSGAG-QNQ--PVLSSGTW--EILMVRSAQVDTSLLSQYAGSTCELDSQSGL 293 (470)
T ss_pred CHHHHHHhCCCCCCeEEEccccHHHHHhCCCCC-CCC--EEEecchh--hhheeecCCCcccccccccccceeccccCce
Confidence 3456666665 4666678888888888752 222 33334543 3322211111100 0000 111
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCC-CeeeEEEEcHH
Q 005807 270 TFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASG-AKHLNITLTRS 348 (676)
Q Consensus 270 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g-~~~~~~~itr~ 348 (676)
...|+..+.....+|+.+.|.. ....+..|.+.++++. ......+.+|.+.....| ...++..-+|.
T Consensus 294 ~~~~~~~~~g~~~~W~~~~~~~--------~~~~y~~l~~~a~~~~----~g~~gl~~~p~~~g~~rg~~~Gl~~~~~~~ 361 (470)
T PRK10331 294 YNPGMQWLASGVLEWVRKLFWT--------AETPYQTMIEEARAIP----PGADGVKMQCDLLACQNAGWQGVTLNTTRG 361 (470)
T ss_pred eeechhhHHHHHHHHHHHHhcc--------cCchHHHHHHHHhcCC----CCCCceEecccccccCceeEECCCCCcCHH
Confidence 1123333444467888777631 0012334444443321 112223345554422211 12233344566
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHcC-CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 349 KFETLVNHLIERTKAPCKNCLKDAN-ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 349 ~fe~~~~~~v~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
+| .+-+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.||.++.... ..++.++|||+.|+.-
T Consensus 362 ~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~~~ 437 (470)
T PRK10331 362 HF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGWYG 437 (470)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHHHh
Confidence 55 44444444443333333321 1113478999999999999999999999999876554 4568899999999875
Q ss_pred cCC
Q 005807 428 RGD 430 (676)
Q Consensus 428 ~~~ 430 (676)
.+.
T Consensus 438 ~G~ 440 (470)
T PRK10331 438 VGE 440 (470)
T ss_pred cCC
Confidence 553
No 52
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.76 E-value=5.6e-07 Score=99.88 Aligned_cols=83 Identities=23% Similarity=0.248 Sum_probs=57.8
Q ss_pred EEEEcHHHHHHHHhHHHHHHHHHHH---HHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhh
Q 005807 342 NITLTRSKFETLVNHLIERTKAPCK---NCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVAL 418 (676)
Q Consensus 342 ~~~itr~~fe~~~~~~v~~i~~~i~---~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~ 418 (676)
+..-++.+| ++-+++.+.-.++ +.+++.+. ..++.|.++||++++|.+.+++.+.||.++....+ .++.++
T Consensus 359 ~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~l 432 (465)
T TIGR02628 359 TLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVA 432 (465)
T ss_pred CCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHH
Confidence 344455554 4444444443333 44444321 24689999999999999999999999998765555 467899
Q ss_pred HHHHHhhhccCC
Q 005807 419 GAAIQGGILRGD 430 (676)
Q Consensus 419 GAal~a~~l~~~ 430 (676)
|||+.|+.-.+.
T Consensus 433 GaA~~a~~a~G~ 444 (465)
T TIGR02628 433 GAAMFGFYGVGE 444 (465)
T ss_pred HHHHHHHHhcCc
Confidence 999999876553
No 53
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.70 E-value=2e-06 Score=87.03 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=52.7
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC-CCCCcchhHhhHHHHHhhh
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS-KGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~-~~~~p~~aVa~GAal~a~~ 426 (676)
++.-+...+.+.+...+++.++. ..|+|+||.++.|.+++.+++.++.++. .+.+|..+.|.|||++|..
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 34444444444444444443332 4789999999999999999999998876 5778999999999999864
No 54
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.67 E-value=4.9e-06 Score=95.56 Aligned_cols=329 Identities=19% Similarity=0.260 Sum_probs=190.1
Q ss_pred EEcHHHHHhhhh----CCCchHHHhhhhhcCCC--------CCHHHH--H--HhccCCeEEEeCCCCCeEEEe-------
Q 005807 100 LVGTPAKRQAVT----NPANTLFGTKRLIGRRF--------NDAQTQ--K--EMKMVPFKIVNAPNGDAWVEA------- 156 (676)
Q Consensus 100 ~~G~~A~~~~~~----~p~~~~~~~K~llg~~~--------~d~~~~--~--~~~~~~~~~~~~~~~~~~v~~------- 156 (676)
-||.+|...... .....++..||+|+... +..... . .....|+...-++.|.+....
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 378887654432 33445788999997532 111110 0 011111221223455554322
Q ss_pred --CCeeeCHHHHHHHHHHHHHHHHHHHhCC--------------CCCeEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 005807 157 --NGQQYSPSQIGAFVLTKMKETAESYLGK--------------SVSEAVITVPAYFNDAQRQATKDAGRIA-------- 212 (676)
Q Consensus 157 --~~~~~~~~ev~a~~L~~l~~~a~~~l~~--------------~~~~~VITVPa~~~~~qr~~l~~Aa~~A-------- 212 (676)
-.-.||-..++.++|..+..+|..+++. ....+++|||......+|+.++++++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 2245777888888888888888766543 2457999999999999999998888766
Q ss_pred CCC---------------------eEEeeChhHHHHHhcccc---------------------CC------C-C--eEEE
Q 005807 213 GLD---------------------VQRIINEPTAAALSYGMN---------------------NK------E-G--LIAV 241 (676)
Q Consensus 213 Gl~---------------------~~~li~Ep~AAal~y~~~---------------------~~------~-~--~vlV 241 (676)
|+. +..=-+|.+|.-+-|... +. . . .|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 111125666654443211 11 1 1 7999
Q ss_pred EeeCCceeEEEEEEEe----CCe-EEE----EEecCCCCcchHHHHHHHHH-HHHHHhhh----------------hccC
Q 005807 242 FDLGGGTFDVSVLEIS----NGV-FEV----KATNGDTFLGGEDFDNALLE-FLVSEFKR----------------TERI 295 (676)
Q Consensus 242 ~D~GgGT~Dvsv~~~~----~~~-~~v----~~~~g~~~lGG~~~D~~l~~-~l~~~~~~----------------~~~~ 295 (676)
+|+||||||+.|-.+. .|. ..+ +-..| -.+.|+|+-..+++ ++...+.+ -+|.
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~ 649 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGG 649 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCC
Confidence 9999999999998876 221 111 12233 67889998666554 34333322 1122
Q ss_pred CCccCH-H-------------HHHHHHHHHHHHHHHcCCCCceeeec--------------ccccc-------CCC--CC
Q 005807 296 DLSQDK-L-------------ALQRLRESAEKAKIELSSTSQTEINL--------------PFITA-------DAS--GA 338 (676)
Q Consensus 296 ~~~~~~-~-------------~~~~L~~~~e~~K~~Ls~~~~~~~~i--------------~~~~~-------~~~--g~ 338 (676)
+-.... + ...+++.++|..-.. .........+ .++.. +.. ..
T Consensus 650 dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 650 DGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 200000 0 011244455543210 0000001100 11110 000 12
Q ss_pred eeeEEEEcHHHHHHHHh---HHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC--------
Q 005807 339 KHLNITLTRSKFETLVN---HLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS-------- 407 (676)
Q Consensus 339 ~~~~~~itr~~fe~~~~---~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~-------- 407 (676)
.++.+.|+.+++...+. -.+..++..+-+++...+ .|.++|+|--||+|.||..+++....++.
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 45678899999998775 677777777777777654 48999999999999999999999865432
Q ss_pred ------------CCCCcchhHhhHHHHHhhhccCCCceeE
Q 005807 408 ------------KGVNPDEAVALGAAIQGGILRGDVKELL 435 (676)
Q Consensus 408 ------------~~~~p~~aVa~GAal~a~~l~~~~~~~~ 435 (676)
.--||..++|.||.+.......+.+++.
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF~ 843 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNFY 843 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCce
Confidence 2349999999999876554433444443
No 55
>PRK15027 xylulokinase; Provisional
Probab=98.67 E-value=8.5e-07 Score=99.02 Aligned_cols=209 Identities=17% Similarity=0.155 Sum_probs=110.6
Q ss_pred HHHHHHHHHcCCC---eEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEE---e-CCeEEEEEe--cCCC-Cc
Q 005807 203 QATKDAGRIAGLD---VQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI---S-NGVFEVKAT--NGDT-FL 272 (676)
Q Consensus 203 ~~l~~Aa~~AGl~---~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~---~-~~~~~v~~~--~g~~-~l 272 (676)
....++++..||. ++.-..+..|++++.+.... ..+++-+|.+.+-..+..- . ...+..... .+.. ..
T Consensus 211 ~l~~~~a~~~GL~~~pV~~g~~D~~aa~~g~g~~~~--g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (484)
T PRK15027 211 ALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVDA--NQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLM 288 (484)
T ss_pred cccHHHHHHhCCCCCeEEecccHHHHHHhccCcccC--CcEEEEecCceEEEEecCCcccCchhceeecceecCCceEEE
Confidence 3345777778864 45556688888888776543 3455555665543322210 0 011111111 1111 11
Q ss_pred chHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCC---------CeeeEE
Q 005807 273 GGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASG---------AKHLNI 343 (676)
Q Consensus 273 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g---------~~~~~~ 343 (676)
|+....-...+|+.+.+.. + . ...+.+.+.++ .......+.+|++...... ...++.
T Consensus 289 ~~~~~~g~~~~W~~~~~~~----~---~---~~~~~~~a~~~----~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~ 354 (484)
T PRK15027 289 SVMLSAASCLDWAAKLTGL----S---N---VPALIAAAQQA----DESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTH 354 (484)
T ss_pred EEehhhHHHHHHHHHHhCC----c---c---HHHHHHHHhhC----CCCCCceEEecccccCCCcCCCCCcceEEECCCC
Confidence 2222233345677665521 0 0 22232322221 1112233455655322110 112233
Q ss_pred EEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHH
Q 005807 344 TLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 344 ~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~ 423 (676)
..++.+|-..+-+-+--....+-+.+++.+. .++.|+++||+++++.+.+++.+.||.++....+..++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 4456665443333222222333344454443 4689999999999999999999999998866667777889999999
Q ss_pred hhhccCC
Q 005807 424 GGILRGD 430 (676)
Q Consensus 424 a~~l~~~ 430 (676)
|+.-.|.
T Consensus 432 A~~~~G~ 438 (484)
T PRK15027 432 AQIAANP 438 (484)
T ss_pred HHHhcCC
Confidence 9976553
No 56
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.64 E-value=6.7e-07 Score=100.02 Aligned_cols=206 Identities=21% Similarity=0.189 Sum_probs=102.6
Q ss_pred HHHHHHHHcCC----CeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEE--eCCeEEEEEe----cCC-CCc
Q 005807 204 ATKDAGRIAGL----DVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI--SNGVFEVKAT----NGD-TFL 272 (676)
Q Consensus 204 ~l~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~--~~~~~~v~~~----~g~-~~l 272 (676)
...++|+..|| +++.-..+-.+++++.+..+.+. ++.=+|...+-.++... .+........ .+. ...
T Consensus 222 l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~--~~~~~gts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (502)
T COG1070 222 LTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGD--VSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLPGWFIVM 299 (502)
T ss_pred ccHHHHHHhCCCCCCeEEECCchHHHHhccCCCcCCCc--EEEEeccccEEeeeccccccCCccceeeecccCCCeEEEE
Confidence 34577788888 34555678888888888776544 44434433332233221 1111111110 111 123
Q ss_pred chHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcC-CCCceeeeccccccCCCC---------CeeeE
Q 005807 273 GGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELS-STSQTEINLPFITADASG---------AKHLN 342 (676)
Q Consensus 273 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls-~~~~~~~~i~~~~~~~~g---------~~~~~ 342 (676)
|+...-....+|+.+.+.... . ...+ .+.+..... ......+..|++..+... .....
T Consensus 300 ~~~~~~~~~l~w~~~~~~~~~----~-----~~~~---~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~ 367 (502)
T COG1070 300 GANNTGGWLLEWLRELFGLAE----S-----YPEL---LEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLT 367 (502)
T ss_pred EEecccHHHHHHHHHHhcccc----C-----cHHH---HHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccc
Confidence 444444455566666664321 0 0111 111111111 111223444554321111 01122
Q ss_pred EEEcHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDA-NITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 343 ~~itr~~fe~~~~~~v~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
...++.+|-..+-+-+--......+.|.+. + ..++.|.++||+++++++.+++.+.||.++..+...+.+.+-||+
T Consensus 368 ~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g---~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~ 444 (502)
T COG1070 368 LPHTRAHLARAVLEGVAFALADGLEALEELGG---KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAA 444 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHH
Confidence 334566665444443333334444555554 4 345799999999999999999999999987755444444444444
Q ss_pred HHhhh
Q 005807 422 IQGGI 426 (676)
Q Consensus 422 l~a~~ 426 (676)
+.+..
T Consensus 445 ~~~~~ 449 (502)
T COG1070 445 LAAAA 449 (502)
T ss_pred HHHHH
Confidence 44443
No 57
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=98.62 E-value=3.4e-09 Score=95.27 Aligned_cols=72 Identities=49% Similarity=0.793 Sum_probs=61.2
Q ss_pred ChhhhHHhhhcccccccccccccccCCCCCCCCCc----ccccccccCCCCCCCCCCceEEEEcCCceEEEEEEEC
Q 005807 1 MAIAGILRSLRRRDVASAHLSACKSLTGNVKPSWA----SANWASLARPFSARPAGNDVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~~ 72 (676)
||+|||+||+|||+++++|.|.-+++.++..|+.. ++.+....+++...+....++|+|+||+|++++..++
T Consensus 1 ma~~al~rs~rrrdv~sapls~y~~~~~~~~p~w~~s~~~qn~a~~sra~~~kp~~~d~~g~~~gt~n~~~~~~e~ 76 (213)
T PLN00130 1 MAATALFRSIRRRDVVSAPLSVYKSLAGNAQPSWGSSYIGQNYASFSRAFGSKPVVNDILGTGLGTNNAIREEREK 76 (213)
T ss_pred CchHHHHHHHHhhhhhcCchHHHHHhhcCCCCCccccccccchHHHHHHhcCCCCccceeccCCCcchHHHHHHhc
Confidence 99999999999999999999998887776666543 3566777888888777889999999999999998764
No 58
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.61 E-value=2.1e-06 Score=92.96 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=114.4
Q ss_pred EEEEcCCceEEEEEEECCceEEEe-CCCCCcc-cceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 56 IGVDLGTTNSCVAVMEGKNPKVIE-NSEGTRT-TPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 56 vGID~GTt~s~va~~~~~~~~vi~-~~~g~~~-~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
|-||.||-.+++.+..+..|..+. +..+.+. ..++..-...+...+|..+...... +.. .++.
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~---~~~~----------- 73 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLL---ELRY----------- 73 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-ccc---eeec-----------
Confidence 899999999999999887787553 3333332 2222221123345555555421100 000 0000
Q ss_pred HHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEeCCCCCHHHHHHHHHH-HH
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG--KSVSEAVITVPAYFNDAQRQATKDA-GR 210 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~--~~~~~~VITVPa~~~~~qr~~l~~A-a~ 210 (676)
| .. +|. +.--+....+.+++...- ..+. ..-..+++|-|..+....|+.+-+. .+
T Consensus 74 -------p-----~~--------~g~-i~~W~~~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE 131 (444)
T COG5277 74 -------P-----IE--------NGI-ILNWDAMEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITELLFE 131 (444)
T ss_pred -------c-----cc--------cCc-cCCcHHHHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHHHHH
Confidence 0 01 111 111223334444443332 1122 1234689999999999998877554 67
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 288 (676)
...++.+.+..++.++..+.+... .+.+|+|+|.+.++++-+--+-.. .....-..+||.+++..|.+.|...
T Consensus 132 ~~~vp~~~~~~~~~l~~ya~g~~~--~~g~ViD~G~~~t~v~PV~DG~~l---~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 132 TLNVPALYLAIQAVLSLYASGSSD--ETGLVIDSGDSVTHVIPVVDGIVL---PKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred hcCCcceEeeHHHHHHHHhcCCCC--CceEEEEcCCCceeeEeeeccccc---cccceeeecCcHHHHHHHHHHHhhc
Confidence 778888899999999988877542 367999999999999865322111 1112236899999999999988874
No 59
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.58 E-value=4.7e-06 Score=87.66 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=53.9
Q ss_pred HHHHhHHHHHHHHHHHH-HHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhh
Q 005807 351 ETLVNHLIERTKAPCKN-CLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~ 425 (676)
++++..+...+.+.+.. +++..++. +.|+++||.++.+.+.+.+++.++.++..+.+|+.+.|.|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 33444444444444442 34433321 4699999999999999999999999999999999999999999985
No 60
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.56 E-value=2.7e-06 Score=95.36 Aligned_cols=197 Identities=17% Similarity=0.171 Sum_probs=105.7
Q ss_pred cCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEe-C------CeEE-EEEe-cC---CCCcchHHHHH
Q 005807 212 AGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEIS-N------GVFE-VKAT-NG---DTFLGGEDFDN 279 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~-~------~~~~-v~~~-~g---~~~lGG~~~D~ 279 (676)
+|.+++.-..+-.|++++.+....+..+++ + ||..+..+... . +... +... .+ -...|+...--
T Consensus 236 ~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~--~--GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g 311 (498)
T PRK00047 236 GEVPIAGIAGDQQAALFGQLCFEPGMAKNT--Y--GTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVAG 311 (498)
T ss_pred CCceEEEEccHHHHHHHhCcCCCCCceEEe--e--ccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhHH
Confidence 577888778888999998876554333333 3 44444222221 1 1111 1111 11 01234444455
Q ss_pred HHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCC---------CeeeEEEEcHHHH
Q 005807 280 ALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASG---------AKHLNITLTRSKF 350 (676)
Q Consensus 280 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g---------~~~~~~~itr~~f 350 (676)
.+++|+.+.+... .. ...+...++. .. .....+.+|++...... ...+...-+|.++
T Consensus 312 ~~l~W~~~~~~~~------~~---~~~~~~~a~~----~~-~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l 377 (498)
T PRK00047 312 SAIQWLRDGLKII------SD---ASDSEALARK----VE-DNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHI 377 (498)
T ss_pred HHHHHHHHHhcCC------CC---HHHHHHHHhc----CC-CCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHH
Confidence 5778888777410 01 1112111211 11 22234567776521110 1112233345444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcC-CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 351 ETLVNHLIERTKAPCKNCLKDAN-ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
++-+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.||.++.... ..++.++|||+.|+.-.|
T Consensus 378 ---~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 378 ---IRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcC
Confidence 44445544444444433321 1112468999999999999999999999999875544 556889999999987655
Q ss_pred C
Q 005807 430 D 430 (676)
Q Consensus 430 ~ 430 (676)
.
T Consensus 454 ~ 454 (498)
T PRK00047 454 F 454 (498)
T ss_pred c
Confidence 3
No 61
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.55 E-value=7.8e-06 Score=83.86 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=59.1
Q ss_pred HHHHHhHHHHHHHHHHHH-HHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 350 FETLVNHLIERTKAPCKN-CLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
.|+++..+...+...+.. +++...+.. -|+|+||.+....+.+++++.++.++..|.+|...-|.|||+++..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 466666666666655554 555544422 3999999999999999999999999999999999999999999874
No 62
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=98.54 E-value=6.9e-06 Score=92.25 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=53.5
Q ss_pred HHHhHHHHHHHHHHHHHH----HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 352 TLVNHLIERTKAPCKNCL----KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l----~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
.++.-+++.+.-.+...+ +..+ ..++.|.++||.++++.+.+++.+.||.++....++ ++.++|||+.|+.-
T Consensus 374 ~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~ 449 (505)
T TIGR01314 374 HMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKA 449 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHh
Confidence 344445555444444332 2233 357899999999999999999999999987655544 68899999999875
Q ss_pred cC
Q 005807 428 RG 429 (676)
Q Consensus 428 ~~ 429 (676)
.|
T Consensus 450 ~G 451 (505)
T TIGR01314 450 LG 451 (505)
T ss_pred cC
Confidence 54
No 63
>PRK13317 pantothenate kinase; Provisional
Probab=98.45 E-value=4e-05 Score=78.26 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=42.9
Q ss_pred CCcEEEEEc-CCcCcHHHHHHHHHHh---CCCCCCCCCcchhHhhHHHHHhh
Q 005807 378 DVDEVLLVG-GMTRVPKVQEIVTEIF---GKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 378 ~i~~ViLvG-G~s~~p~i~~~l~~~f---g~~~~~~~~p~~aVa~GAal~a~ 425 (676)
.++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 457999999 7999999999999988 56788899999999999999875
No 64
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=98.40 E-value=2.7e-05 Score=87.42 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=55.6
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHH----cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 346 TRSKFETLVNHLIERTKAPCKNCLKD----ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 346 tr~~fe~~~~~~v~~i~~~i~~~l~~----~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
++.+| +.-+++.+.-.++..++. .+. .++.|+++||.++++.+.+++.+.||.++.... ..++.++|||
T Consensus 376 ~~~~i---~rAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaA 448 (504)
T PTZ00294 376 TRAHI---VRAALEAIALQTNDVIESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAA 448 (504)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHH
Confidence 45544 444444444444444332 243 368999999999999999999999999876555 5557899999
Q ss_pred HHhhhccCC
Q 005807 422 IQGGILRGD 430 (676)
Q Consensus 422 l~a~~l~~~ 430 (676)
+.|+.-.|.
T Consensus 449 l~aa~a~G~ 457 (504)
T PTZ00294 449 LLAGLAVGV 457 (504)
T ss_pred HHHHhhcCc
Confidence 999876554
No 65
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.40 E-value=1.8e-05 Score=79.13 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=50.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC-C----CCCCCCcchhHhhHHHHHh
Q 005807 351 ETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK-S----PSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~-~----~~~~~~p~~aVa~GAal~a 424 (676)
++++.-+...+.+.+...++..+.. -+.|+|+||.++.+.+.+.|++.++. + +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3344455555555555555544321 14699999999999999999999842 2 4456789999999999975
No 66
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=98.35 E-value=2.2e-05 Score=88.87 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=65.7
Q ss_pred EEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 342 NITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 342 ~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
+..-+|..+..++..+++.+.-.++.+++...-....++.|.++||.++++.+.+++.+.||.++....+ .++.++|||
T Consensus 407 ~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA 485 (541)
T TIGR01315 407 SMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAA 485 (541)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHH
Confidence 3444577777778888887776666666543211234789999999999999999999999998766554 457899999
Q ss_pred HHhhhccC
Q 005807 422 IQGGILRG 429 (676)
Q Consensus 422 l~a~~l~~ 429 (676)
+.|+.-.+
T Consensus 486 ~lA~~~~G 493 (541)
T TIGR01315 486 MLGAKAAG 493 (541)
T ss_pred HHHHHhcC
Confidence 99987554
No 67
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.35 E-value=6.8e-05 Score=84.01 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=55.8
Q ss_pred EEcHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHH
Q 005807 344 TLTRSKFETLVNHLIERTKAPCKNCLKDAN-ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 344 ~itr~~fe~~~~~~v~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal 422 (676)
.-++.+| +.-+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.||.++.. .+..++.++|||+
T Consensus 367 ~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA~ 442 (493)
T TIGR01311 367 GTTKAHI---ARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAAY 442 (493)
T ss_pred CCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHHH
Confidence 3345554 34444444444443333321 11134789999999999999999999999998765 4445788999999
Q ss_pred HhhhccC
Q 005807 423 QGGILRG 429 (676)
Q Consensus 423 ~a~~l~~ 429 (676)
.|+.-.|
T Consensus 443 ~a~~~~G 449 (493)
T TIGR01311 443 AAGLAVG 449 (493)
T ss_pred HHHhhcC
Confidence 9987555
No 68
>PLN02295 glycerol kinase
Probab=98.30 E-value=6e-05 Score=84.78 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=55.6
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHc----CC--CcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhH
Q 005807 346 TRSKFETLVNHLIERTKAPCKNCLKDA----NI--TIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALG 419 (676)
Q Consensus 346 tr~~fe~~~~~~v~~i~~~i~~~l~~~----~~--~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~G 419 (676)
+|.+| ++-+++.+.-.++..++.. +. ....++.|.++||+++++.+.|++.+.||.++... +..++.++|
T Consensus 377 ~~~~l---~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alG 452 (512)
T PLN02295 377 NKAHI---ARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALG 452 (512)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHH
Confidence 45544 4444554444444444432 21 12347899999999999999999999999988544 445788999
Q ss_pred HHHHhhhccC
Q 005807 420 AAIQGGILRG 429 (676)
Q Consensus 420 Aal~a~~l~~ 429 (676)
||+.|+.-.+
T Consensus 453 aA~~A~~~~G 462 (512)
T PLN02295 453 AAYAAGLAVG 462 (512)
T ss_pred HHHHHHhhcC
Confidence 9999987555
No 69
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=98.25 E-value=0.00049 Score=77.90 Aligned_cols=84 Identities=19% Similarity=0.268 Sum_probs=56.9
Q ss_pred EEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCC-cCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGM-TRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 343 ~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
..-+|.+|-..+-+-+---...+.+.|++.+ ..++.|+++||+ ++++.+.+++.+.||.++....+ .++.+.|||
T Consensus 403 ~~~~~~~~~RAvlEgia~~~~~~l~~l~~~g---~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~a~GaA 478 (536)
T TIGR01234 403 LATDAPLLYRALIEATAFGTRMIMETFTDSG---VPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQAPALGAA 478 (536)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-CcchhHHHH
Confidence 3345665443333222222233334444444 357899999999 99999999999999998766655 468899999
Q ss_pred HHhhhccCC
Q 005807 422 IQGGILRGD 430 (676)
Q Consensus 422 l~a~~l~~~ 430 (676)
+.|+.-.|.
T Consensus 479 ~lA~~~~G~ 487 (536)
T TIGR01234 479 IFAAVAAGV 487 (536)
T ss_pred HHHHHHcCC
Confidence 999876553
No 70
>PRK04123 ribulokinase; Provisional
Probab=98.25 E-value=0.00021 Score=81.23 Aligned_cols=78 Identities=27% Similarity=0.463 Sum_probs=55.5
Q ss_pred EcHHHHHHHHhHHHHHHHHHHH---HHHHHcCCCcCCCcEEEEEcCC-cCcHHHHHHHHHHhCCCCCCCCCcchhHhhHH
Q 005807 345 LTRSKFETLVNHLIERTKAPCK---NCLKDANITIKDVDEVLLVGGM-TRVPKVQEIVTEIFGKSPSKGVNPDEAVALGA 420 (676)
Q Consensus 345 itr~~fe~~~~~~v~~i~~~i~---~~l~~~~~~~~~i~~ViLvGG~-s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GA 420 (676)
-+|.++ ++.+++.+.-.++ +.|++.+ ..++.|+++||+ ++++.+.+++.+.||.++.... +.++.++||
T Consensus 408 ~~~~~l---~RAvlEgia~~~~~~~e~l~~~g---~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGa 480 (548)
T PRK04123 408 TDAPDI---YRALIEATAFGTRAIMECFEDQG---VPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGA 480 (548)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHcC---CCcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHH
Confidence 345544 4445554444333 3444434 347899999999 9999999999999998775444 567889999
Q ss_pred HHHhhhccC
Q 005807 421 AIQGGILRG 429 (676)
Q Consensus 421 al~a~~l~~ 429 (676)
|+.|+.-.+
T Consensus 481 A~lA~~~~G 489 (548)
T PRK04123 481 AIFAAVAAG 489 (548)
T ss_pred HHHHHHHhc
Confidence 999987544
No 71
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.09 E-value=2.1e-05 Score=82.43 Aligned_cols=215 Identities=16% Similarity=0.199 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEeeChhHHHHHhccccCCCCeEE
Q 005807 162 SPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAAALSYGMNNKEGLIA 240 (676)
Q Consensus 162 ~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~vl 240 (676)
+.+++ ..+..|+...-..... ...-+++|-|..|...-|+.+.+.. +.-+.+-+.+ .-.|..++++.. +=+
T Consensus 77 ~wd~m-e~iw~~if~~~L~~~P-ee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g~t----tG~ 148 (372)
T KOG0676|consen 77 DWDDM-EKIWHHLFYSELLVAP-EEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASGRT----TGL 148 (372)
T ss_pred chHHH-HHHHHHHHHHhhccCc-ccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcCCe----eEE
Confidence 33343 5555666522111111 2257999999999999998887653 3344444444 123322233332 459
Q ss_pred EEeeCCceeEEE-EEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcC
Q 005807 241 VFDLGGGTFDVS-VLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELS 319 (676)
Q Consensus 241 V~D~GgGT~Dvs-v~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 319 (676)
|+|+|.|-+++. +++ | +.+...-....+||.+++..+...|.+ .+....... -+.-++.+|+.++
T Consensus 149 VvD~G~gvt~~vPI~e---G-~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklC 214 (372)
T KOG0676|consen 149 VVDSGDGVTHVVPIYE---G-YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLC 214 (372)
T ss_pred EEEcCCCceeeeeccc---c-cccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhc
Confidence 999999966544 433 1 112222345789999999877777665 121111110 0112344444443
Q ss_pred CCC------------ceeeeccccccCCCCCeeeEEEEcHHHH---HHHHhHHH-----HHHHHHHHHHHHHc--CCCcC
Q 005807 320 STS------------QTEINLPFITADASGAKHLNITLTRSKF---ETLVNHLI-----ERTKAPCKNCLKDA--NITIK 377 (676)
Q Consensus 320 ~~~------------~~~~~i~~~~~~~~g~~~~~~~itr~~f---e~~~~~~v-----~~i~~~i~~~l~~~--~~~~~ 377 (676)
... ...+...+ ...+|.. +.+..+.| |-+++|-+ ..+.+.+-..+-++ ++.+.
T Consensus 215 yvald~~~e~~~~~~~~~l~~~y--~lPDg~~---i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~ 289 (372)
T KOG0676|consen 215 YVALDFEEEEETANTSSSLESSY--ELPDGQK---ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKD 289 (372)
T ss_pred ccccccchhhhcccccccccccc--cCCCCCE---EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHH
Confidence 221 11111111 1111111 33333332 22333222 22333333333333 23333
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
-...|+|+||++..|.+.+++.+.+.
T Consensus 290 L~~nivLsGGtT~~pGl~~Rl~kEl~ 315 (372)
T KOG0676|consen 290 LYENIVLSGGTTMFPGLADRLQKELQ 315 (372)
T ss_pred HHhheEEeCCcccchhHHHHHHHHHh
Confidence 45799999999999999999888763
No 72
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=98.01 E-value=0.00074 Score=75.54 Aligned_cols=51 Identities=29% Similarity=0.519 Sum_probs=44.2
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
.++.|+++||.++++.+.+++.+.||.++... +..++.++|||+.|+...+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeec-CCCcchHHHHHHHHHHhcC
Confidence 47899999999999999999999999877554 4667889999999987655
No 73
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.83 E-value=8.9e-05 Score=72.93 Aligned_cols=192 Identities=22% Similarity=0.240 Sum_probs=99.6
Q ss_pred HHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 005807 209 GRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVS 287 (676)
Q Consensus 209 a~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 287 (676)
-+..|.++..-=-|+++|.+........+ ...|+|+|||++|.+++.-++.. .-..-.| .|+-++..+...|
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v-~~iHlAG----AG~mVTmlI~sEL-- 177 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV-TAIHLAG----AGNMVTMLINSEL-- 177 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E-EEEEEE-----SHHHHHHHHHHHC--
T ss_pred HHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE-EEEEecC----CchhhHHHHHHhh--
Confidence 34568888888889999998776554444 89999999999999998655443 2222222 3565665544322
Q ss_pred HhhhhccCCCccCHHHHHHHHHHHHHHHHHcCC-----------CCceeeeccccccCC---------CCCeeeEEEEcH
Q 005807 288 EFKRTERIDLSQDKLALQRLRESAEKAKIELSS-----------TSQTEINLPFITADA---------SGAKHLNITLTR 347 (676)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~-----------~~~~~~~i~~~~~~~---------~g~~~~~~~itr 347 (676)
+++ . +..+|.+|+---. ..+..+.-..+.... ++...+...++-
T Consensus 178 ------Gl~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~l 241 (332)
T PF08841_consen 178 ------GLE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSL 241 (332)
T ss_dssp ------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-H
T ss_pred ------CCC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccH
Confidence 111 0 1456777763110 001111100010000 011111222233
Q ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHcC--CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC--------CCCCCCCcchhH
Q 005807 348 SKFETLVNHLIERT-KAPCKNCLKDAN--ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK--------SPSKGVNPDEAV 416 (676)
Q Consensus 348 ~~fe~~~~~~v~~i-~~~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~~~~~~~p~~aV 416 (676)
+++..+=+..=+++ ..-+.++|++.. -+..+|+.|+|||||+.=--|-+++.+.+.. .+.-..-|..||
T Consensus 242 Ekir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAV 321 (332)
T PF08841_consen 242 EKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAV 321 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHH
Confidence 33332222211111 112233444322 2346799999999999988888899988842 233456799999
Q ss_pred hhHHHHH
Q 005807 417 ALGAAIQ 423 (676)
Q Consensus 417 a~GAal~ 423 (676)
|.|.++.
T Consensus 322 ATGLvls 328 (332)
T PF08841_consen 322 ATGLVLS 328 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999874
No 74
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.00094 Score=72.61 Aligned_cols=77 Identities=21% Similarity=0.370 Sum_probs=58.2
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCc-CCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCC
Q 005807 353 LVNHLIERTKAPCKNCLKDANITI-KDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~ 430 (676)
+....++.+.-..+..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+++. ++.|||+.|+..++.
T Consensus 388 ia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 388 LARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 333444444444444444332222 56888999999999999999999999998888888888 999999999988775
No 75
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.61 E-value=0.00035 Score=72.95 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=51.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-----CCCCCCCCcchhHhhHHHHHh
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-----KSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-----~~~~~~~~p~~aVa~GAal~a 424 (676)
+++.-+...+...+...+.+.. .--..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+.|+|||++|
T Consensus 358 DIaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 358 DILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 3444555555544444554431 112579999999999999999999994 557789999999999999985
No 76
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.51 E-value=0.0092 Score=65.30 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=61.1
Q ss_pred eeEEEEcHHHHHHHHhHH---HHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC---------
Q 005807 340 HLNITLTRSKFETLVNHL---IERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS--------- 407 (676)
Q Consensus 340 ~~~~~itr~~fe~~~~~~---v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~--------- 407 (676)
++.+.|.-.++++.+-.. +......+-+++.- .+-|.++|+|--+|.|.+|..++.....++.
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yr 816 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYR 816 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEecccee
Confidence 445677777776655433 34444444444443 3458899999999999999999887754321
Q ss_pred -----------CCCCcchhHhhHHHHHhhhccCCCceeE
Q 005807 408 -----------KGVNPDEAVALGAAIQGGILRGDVKELL 435 (676)
Q Consensus 408 -----------~~~~p~~aVa~GAal~a~~l~~~~~~~~ 435 (676)
+-.||...+|.||.+.+..+.-...++.
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF~ 855 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNFY 855 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhhccCccee
Confidence 1348999999999887766554444443
No 77
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=97.26 E-value=0.0047 Score=60.10 Aligned_cols=223 Identities=18% Similarity=0.191 Sum_probs=131.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEE
Q 005807 186 VSEAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVK 264 (676)
Q Consensus 186 ~~~~VITVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~ 264 (676)
-..+.+|-|.--....|+.|.+. .+.-||.-+.+.-...-+.++-|+.. =+|+|-|-|-+-+.-+. ++-.+..
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~t----GvVvDSGDGVTHi~PVy-e~~~l~H- 174 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLT----GVVVDSGDGVTHIVPVY-EGFVLPH- 174 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccc----eEEEecCCCeeEEeeee-cceehhh-
Confidence 34789999998888889888766 57789988877665555555444433 38999999988776432 1111111
Q ss_pred EecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCC-----------ceeeecccccc
Q 005807 265 ATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTS-----------QTEINLPFITA 333 (676)
Q Consensus 265 ~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~~~i~~~~~ 333 (676)
-.+-..+.|+++++-|++++..+= +..+-+.+ .+..+..|+.|.... ++++-++...
T Consensus 175 -LtrRldvAGRdiTryLi~LLl~rG---YafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Yt- 242 (389)
T KOG0677|consen 175 -LTRRLDVAGRDITRYLIKLLLRRG---YAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVESYT- 242 (389)
T ss_pred -hhhhccccchhHHHHHHHHHHhhc---cccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeeeeee-
Confidence 123356789999999999876541 11111111 123445555554321 1111111100
Q ss_pred CCCCCeeeEEEEcHHHH---HHHHhHHHH-----HHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 334 DASGAKHLNITLTRSKF---ETLVNHLIE-----RTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 334 ~~~g~~~~~~~itr~~f---e~~~~~~v~-----~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
-. ..-.+.+--+.| |.+++|.+- .+.+++-.+++.+.++. .--++|+|.||++.-|.+-+.|++.+.
T Consensus 243 LP---DGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElk 319 (389)
T KOG0677|consen 243 LP---DGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELK 319 (389)
T ss_pred cC---CCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHH
Confidence 00 112244444455 356666442 45566777777766542 224799999999999999888776541
Q ss_pred -------------------CCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 404 -------------------KSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 404 -------------------~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
..+-.++.-...|-.|.|..|.++..
T Consensus 320 qlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 320 QLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 11223444566788888888877554
No 78
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.08 E-value=0.0062 Score=64.82 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=100.8
Q ss_pred CeeeCHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEEEeCCCCCHHHHHHH-HHHHHHcCCCeEEeeChhHHHHHhcc
Q 005807 158 GQQYSPSQIGAFVLTKMKETAESYLGKSVS-----EAVITVPAYFNDAQRQAT-KDAGRIAGLDVQRIINEPTAAALSYG 231 (676)
Q Consensus 158 ~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~-----~~VITVPa~~~~~qr~~l-~~Aa~~AGl~~~~li~Ep~AAal~y~ 231 (676)
...++..++++++-+-+.-.....|..+.+ .+|+-||-.|.....+.+ .-.....||....++-|+.||.+..|
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 345667777776655444444555554433 689999999997775554 44567789999999999999998877
Q ss_pred ccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH-hhhhccCCCccCHHHHHHHHHH
Q 005807 232 MNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE-FKRTERIDLSQDKLALQRLRES 310 (676)
Q Consensus 232 ~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~-~~~~~~~~~~~~~~~~~~L~~~ 310 (676)
+. ...|||+|+-+|.+++++ +|+. +..+.-....||+|+++.|+-++... |. ....++.. +.. +..
T Consensus 274 ls----s~CVVdiGAQkTsIaCVE--dGvs-~~ntri~L~YGGdDitr~f~~ll~rs~FP-y~d~~v~~-~~d----~lL 340 (618)
T KOG0797|consen 274 LS----SACVVDIGAQKTSIACVE--DGVS-LPNTRIILPYGGDDITRCFLWLLRRSGFP-YQDCDVLA-PID----WLL 340 (618)
T ss_pred cc----ceeEEEccCcceeEEEee--cCcc-ccCceEEeccCCchHHHHHHHHHHhcCCC-cccccccc-ccc----HHH
Confidence 65 448999999999988865 3321 11112235789999999998877652 11 01112221 111 123
Q ss_pred HHHHHHHcCCCCcee
Q 005807 311 AEKAKIELSSTSQTE 325 (676)
Q Consensus 311 ~e~~K~~Ls~~~~~~ 325 (676)
+++.|+.+..-....
T Consensus 341 l~~LKe~Fc~l~~a~ 355 (618)
T KOG0797|consen 341 LNQLKEKFCHLRAAE 355 (618)
T ss_pred HHHHHHHhccccHhh
Confidence 567787777654443
No 79
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.06 E-value=0.00067 Score=66.09 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=54.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCC-cCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 350 FETLVNHLIERTKAPCKNCLKDANIT-IKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
..+++.-+++.+.-.++..++...-. ...++.|+++||.++++.+.+++.+.|+.++....+ .++.+.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 34445555555555554444443111 134799999999999999999999999987655544 89999999999874
No 80
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.05 E-value=0.0086 Score=64.90 Aligned_cols=218 Identities=20% Similarity=0.218 Sum_probs=120.5
Q ss_pred HHHHHHHHcCCCe----EEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeC---C----eEEEEEecCCCCc
Q 005807 204 ATKDAGRIAGLDV----QRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISN---G----VFEVKATNGDTFL 272 (676)
Q Consensus 204 ~l~~Aa~~AGl~~----~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~---~----~~~v~~~~g~~~l 272 (676)
.+.++|+..||.. ..-+-+.-|.+++.+... +.-|++=+|-+|+++.+-+-.. | ....+-...-..=
T Consensus 233 Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~--~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~E 310 (544)
T COG1069 233 LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ--PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYE 310 (544)
T ss_pred cCHHHHHHhCCCCCcEEeccceeccccccccccCC--CCeEEEEeccceEEEEecCCceecCccccccccccCcchhhhc
Confidence 3456666667632 222233333333332221 3446666777777777654321 1 1111111112233
Q ss_pred chHHHHHHHHHHHHHHhhh---------hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCC------
Q 005807 273 GGEDFDNALLEFLVSEFKR---------TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASG------ 337 (676)
Q Consensus 273 GG~~~D~~l~~~l~~~~~~---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g------ 337 (676)
||..-.-.+++||.+...- +++.++ ......++...+++.+...+.. ...+-++.+..+...
T Consensus 311 gGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~-~~l~~l~~f~GNRsP~aDp~l 387 (544)
T COG1069 311 GGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YESLAQRLELLTEAAAAIPPLA-SGLHVLDWFNGNRSPLADPRL 387 (544)
T ss_pred ccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHHHHHHHHHHHhhHhccCccc-CCcEecccccCCcCCCCCccc
Confidence 6777777788888776321 111111 0112334444455555444322 122223322222111
Q ss_pred ---CeeeEEEEcHHHHHHHHhHHHHHHH---HHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCC
Q 005807 338 ---AKHLNITLTRSKFETLVNHLIERTK---APCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVN 411 (676)
Q Consensus 338 ---~~~~~~~itr~~fe~~~~~~v~~i~---~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~ 411 (676)
...+++.-+.+.+-.+..-.+..+. +.|-+++++.+ ..|+.|+.+||-.+.|.+.+.+.+..|.++..+ .
T Consensus 388 ~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~ 463 (544)
T COG1069 388 KGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-A 463 (544)
T ss_pred eeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhcCCeEEee-c
Confidence 1234455556655566666555554 34555666666 457999999999999999999999999877665 7
Q ss_pred cchhHhhHHHHHhhhccCC
Q 005807 412 PDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 412 p~~aVa~GAal~a~~l~~~ 430 (676)
.+++++.|+|++|+.-.+.
T Consensus 464 s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 464 SDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred ccchhhhHHHHHHHHHhcc
Confidence 7889999999999976654
No 81
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.03 E-value=0.0053 Score=65.98 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=94.1
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
.-||||+|||.+.+-+.+ -.+.|..+...+|-+.-.+ .+.+|=... .|-.++
T Consensus 4 ~SVGIDIGTSTTQlvfSr----l~l~n~a~~~~vPri~I~d--keViYrS~I-------------~fTPl~--------- 55 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSR----LTLENRASGFSVPRIEIVD--KEVIYRSPI-------------YFTPLL--------- 55 (473)
T ss_pred EEEEEeecCCceeEEEEE----eEEEeccCCCccceEEEec--cEEEecCCc-------------cccCCC---------
Confidence 358999999999997743 2556777777778766552 234431110 011111
Q ss_pred HHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAG 213 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AG 213 (676)
....++.+.+-..+....++.--..-...-.-++||==+.-.+.+|..+..-+..||
T Consensus 56 -----------------------~~~~ID~~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aG 112 (473)
T PF06277_consen 56 -----------------------SQTEIDAEALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAG 112 (473)
T ss_pred -----------------------CCCccCHHHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcC
Confidence 112233444433333322221100001122356777777777888888888888887
Q ss_pred CCeEEe---eChhHHHHHhcccc---CCC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHH
Q 005807 214 LDVQRI---INEPTAAALSYGMN---NKE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDF 277 (676)
Q Consensus 214 l~~~~l---i~Ep~AAal~y~~~---~~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~ 277 (676)
==++.- -.|+.-|+-..|.. +.. ..|+=+|+||||+.+++++-. . +.+ .++.++||+.+
T Consensus 113 DFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G--~--v~~-T~cl~IGGRLi 178 (473)
T PF06277_consen 113 DFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNG--E--VID-TACLDIGGRLI 178 (473)
T ss_pred CEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECC--E--EEE-EEEEeeccEEE
Confidence 533322 24555555544332 222 389999999999999996633 2 223 33477888754
No 82
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.57 E-value=0.74 Score=47.16 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=49.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHh-----CCCCCCCCCcchhHhhHHHHHh
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-----GKSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f-----g~~~~~~~~p~~aVa~GAal~a 424 (676)
++++...+.+.+.+...+++...... .|+|+||....+.+++.+.+.+ ..++..+..|....+.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 45555556666666666666554321 2999999999987777774444 3345567889999999999986
No 83
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.56 E-value=0.11 Score=56.13 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=49.2
Q ss_pred eEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHH-HhCCC-CCCCCCcchhHhh
Q 005807 341 LNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTE-IFGKS-PSKGVNPDEAVAL 418 (676)
Q Consensus 341 ~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~-~fg~~-~~~~~~p~~aVa~ 418 (676)
-.+.+|..+++++. ---..+..-++-.|++++++..+|+.|+|.||++.---+.+.+.= .++.. .-+..-...+.-.
T Consensus 291 ~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al~ 369 (412)
T PF14574_consen 291 DDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAALA 369 (412)
T ss_dssp S-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHHH
T ss_pred CCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHHH
Confidence 46889999998753 333456667788899999999999999999999987777777642 12211 1111222345666
Q ss_pred HHHHH
Q 005807 419 GAAIQ 423 (676)
Q Consensus 419 GAal~ 423 (676)
||.+.
T Consensus 370 GA~~~ 374 (412)
T PF14574_consen 370 GARMA 374 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 84
>PLN02669 xylulokinase
Probab=96.52 E-value=0.0069 Score=68.65 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=54.9
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+++.+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+++.+.||.++.....+ ++.++|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 45555665555555555554432 457899999999999999999999999977655555 6889999999985
No 85
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.11 E-value=0.049 Score=55.50 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=39.6
Q ss_pred CCCcEEEEEcC-CcCcHHHHHHHHHHhC---CCCCCCCCcchhHhhHHHH
Q 005807 377 KDVDEVLLVGG-MTRVPKVQEIVTEIFG---KSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 377 ~~i~~ViLvGG-~s~~p~i~~~l~~~fg---~~~~~~~~p~~aVa~GAal 422 (676)
..++.|+++|| .+..|.+++.+...+. .+.+.+.|+...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 55789999999 6779999999998874 5677888999999999986
No 86
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.93 E-value=0.015 Score=64.39 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=56.2
Q ss_pred EEcHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHH
Q 005807 344 TLTRSKFETLVNHLIERTKAPCKNCLKDA-NITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 344 ~itr~~fe~~~~~~v~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal 422 (676)
.-+|.+|-..+-+-+--....+-+.|++. + ..++.|.++||+++++++.+++.+.+|.++... +.++.++|||+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~---~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~ 429 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRG---KPISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIG 429 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHH
Confidence 34566554333322222223333444442 3 247899999999999999999999999988543 36789999999
Q ss_pred HhhhccCCC
Q 005807 423 QGGILRGDV 431 (676)
Q Consensus 423 ~a~~l~~~~ 431 (676)
.|+.-.+..
T Consensus 430 ~a~~~~G~~ 438 (454)
T TIGR02627 430 VQLMALDEI 438 (454)
T ss_pred HHHHhcCCc
Confidence 998766543
No 87
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.73 E-value=0.035 Score=61.81 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~ 430 (676)
.++.|.++||+++++.+.+++.+.+|.++.... .++.+.|||+.|+.-.|.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999885433 378999999999876654
No 88
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.68 E-value=0.021 Score=64.50 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
.++.|+++||+++++.+.+++.+.||.++....++ ++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 47899999999999999999999999988655544 5789999999987554
No 89
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=95.52 E-value=0.77 Score=46.73 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=53.7
Q ss_pred CeEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEeeChhHHHHHhc---cccCCC-----C-eEEEEeeCCceeEEEEEEE
Q 005807 187 SEAVITVPAYFNDAQRQA-TKDAGRIAGLDVQRIINEPTAAALSY---GMNNKE-----G-LIAVFDLGGGTFDVSVLEI 256 (676)
Q Consensus 187 ~~~VITVPa~~~~~qr~~-l~~Aa~~AGl~~~~li~Ep~AAal~y---~~~~~~-----~-~vlV~D~GgGT~Dvsv~~~ 256 (676)
..+++|=|.+--++-.+. ..-..+.-+++.+ ..-+.|+.+++ ..++.+ . ..+|+|-|-+-|-+.-+-.
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~ 171 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK 171 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc
Confidence 468899887654443333 3344566677643 23333333333 233222 2 8999999998776654322
Q ss_pred eCCeEEEEEecCCCCcchHHHHHHHHHHHH
Q 005807 257 SNGVFEVKATNGDTFLGGEDFDNALLEFLV 286 (676)
Q Consensus 257 ~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~ 286 (676)
+.....+.. -...||..++..|.+++.
T Consensus 172 --g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 --GIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred --CcchhhceE-EeecchHHHHHHHHHHhh
Confidence 211111112 257899999999888764
No 90
>PRK10854 exopolyphosphatase; Provisional
Probab=95.38 E-value=0.11 Score=58.34 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCeEEeeChhHHHHH-hccccCC---CCeEEEEeeCCceeEEEEEEE
Q 005807 201 QRQATKDAGRIAGLDVQRIINEPTAAAL-SYGMNNK---EGLIAVFDLGGGTFDVSVLEI 256 (676)
Q Consensus 201 qr~~l~~Aa~~AGl~~~~li~Ep~AAal-~y~~~~~---~~~vlV~D~GgGT~Dvsv~~~ 256 (676)
....+.++-+..|+++ .+|+..+=|.+ +.+.... .+..+|+|+|||++.+++++-
T Consensus 98 ~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~ 156 (513)
T PRK10854 98 ATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGEN 156 (513)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecC
Confidence 3445566667789997 45554444444 3343321 136899999999999999763
No 91
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.34 E-value=0.19 Score=56.14 Aligned_cols=76 Identities=18% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCeEEeeChhHHHHHhccccC---CCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHH
Q 005807 201 QRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN---KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDF 277 (676)
Q Consensus 201 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~---~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~ 277 (676)
....+.++-+..|+++-.|-.|-+|--.+.+... ..+..+|+|+|||++.+++++ ++.+.. ..+.++|.-.+
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrl 167 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT--GAQATS---LFSLSMGCVTW 167 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec--CCceee---eeEEeccchHH
Confidence 3555666777789997444444444444334332 123689999999999999865 332211 22356777766
Q ss_pred HHHH
Q 005807 278 DNAL 281 (676)
Q Consensus 278 D~~l 281 (676)
.+.+
T Consensus 168 ~e~f 171 (496)
T PRK11031 168 LERY 171 (496)
T ss_pred HHHh
Confidence 5543
No 92
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.20 E-value=0.061 Score=47.71 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=28.1
Q ss_pred EEEEeeCCceeEEEEEEEe-CCeEEEEEecCCCC--cchHHHH--HHHHHHHHHHh
Q 005807 239 IAVFDLGGGTFDVSVLEIS-NGVFEVKATNGDTF--LGGEDFD--NALLEFLVSEF 289 (676)
Q Consensus 239 vlV~D~GgGT~Dvsv~~~~-~~~~~v~~~~g~~~--lGG~~~D--~~l~~~l~~~~ 289 (676)
++++|+|++++.+++++.. .+.++++....... +=+.++. +.+.+-+..-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~ 56 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAI 56 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--H
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHH
Confidence 5899999999999999873 44555543321111 1166666 55555554433
No 93
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.43 E-value=0.5 Score=51.26 Aligned_cols=122 Identities=10% Similarity=0.006 Sum_probs=72.7
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHhCCC----CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEeeChhHHHHHhccccC
Q 005807 160 QYSPSQIGAFVLTKMKETAESYLGKS----VSEAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAAALSYGMNN 234 (676)
Q Consensus 160 ~~~~~ev~a~~L~~l~~~a~~~l~~~----~~~~VITVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~ 234 (676)
.++--++...+|.|+.. ++|.. ..-+++|-+..-....|+.|-+- .+.-|++.+.+=-+..=+... ....
T Consensus 90 VvtNwel~E~ilDY~F~----~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h-N~~~ 164 (645)
T KOG0681|consen 90 VVTNWELMEQILDYIFG----KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH-NYGK 164 (645)
T ss_pred ccccHHHHHHHHHHHHH----hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh-ccCc
Confidence 34445566666666554 34432 23478888877777788888665 466788876554333322221 0111
Q ss_pred CCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 235 KEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 235 ~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
... ..||+++|..+|-|-.+--+...+ . ...-.++||.....-|.+++..++
T Consensus 165 ~~~~~~liis~g~~~T~vipvldG~~il--~-~~kRiN~GG~qa~dYL~~Lmq~Ky 217 (645)
T KOG0681|consen 165 SSNKSGLIISMGHSATHVIPVLDGRLIL--K-DVKRINWGGYQAGDYLSRLMQLKY 217 (645)
T ss_pred ccCcceEEEecCCCcceeEEEecCchhh--h-cceeeccCcchHHHHHHHHHhccC
Confidence 112 689999999999887654333222 2 233478999988777777666553
No 94
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.93 Score=50.20 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccC--C-CCeEE
Q 005807 166 IGAFVLTKMKETAESYLGKSVSEAVITVPAYF--NDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN--K-EGLIA 240 (676)
Q Consensus 166 v~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~--~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~--~-~~~vl 240 (676)
.+...+..|+..++...+..+.++.+.--+.+ -...-+.+..+-+..|+++-.|--|-+|--.++|.-. . .+..+
T Consensus 53 ai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~l 132 (492)
T COG0248 53 AIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGL 132 (492)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence 34444444555444444445555322111111 1223456788888899997666666666555444332 2 44899
Q ss_pred EEeeCCceeEEEEEE
Q 005807 241 VFDLGGGTFDVSVLE 255 (676)
Q Consensus 241 V~D~GgGT~Dvsv~~ 255 (676)
|+|+|||+|.+++..
T Consensus 133 v~DIGGGStEl~~g~ 147 (492)
T COG0248 133 VIDIGGGSTELVLGD 147 (492)
T ss_pred EEEecCCeEEEEEec
Confidence 999999999999976
No 95
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.33 E-value=0.3 Score=50.87 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCeEEeeChhHHHHHhc-cccC--CCCeEEEEeeCCceeEEEEEE
Q 005807 203 QATKDAGRIAGLDVQRIINEPTAAALSY-GMNN--KEGLIAVFDLGGGTFDVSVLE 255 (676)
Q Consensus 203 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~--~~~~vlV~D~GgGT~Dvsv~~ 255 (676)
..+...-+..|+++ ++++..+=|.+.| +... .....+++|+|||++.++++.
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEec
Confidence 33444445679987 5666666655544 3221 112459999999999999865
No 96
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.12 Score=54.70 Aligned_cols=56 Identities=20% Similarity=0.371 Sum_probs=47.8
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+..+....+.+.|+.|||.|+...|-+.|.+.||.++... +..++.+.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 3456666677999999999999999999999999977655 7788899999999774
No 97
>PRK13321 pantothenate kinase; Reviewed
Probab=94.08 E-value=2 Score=43.67 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=17.3
Q ss_pred eEEEEcCCceEEEEEEECC
Q 005807 55 VIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~ 73 (676)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 7999999999999999855
No 98
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=93.69 E-value=0.23 Score=51.39 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=12.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC-CCCCCCcchhHhhHHHH
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS-PSKGVNPDEAVALGAAI 422 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~-~~~~~~p~~aVa~GAal 422 (676)
.+++-..+++.+.|++.....+..+.+ -.++.+||.+ |.+...|.+.+|.+ ++.+..+.-+-|.||++
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 334444555555555554444554433 2345556655 88888999999965 45556678899999985
No 99
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=93.45 E-value=0.38 Score=49.03 Aligned_cols=85 Identities=22% Similarity=0.190 Sum_probs=48.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEe---eChhHHHHHhcccc---CCCC-eEEEEeeCCceeEEEEEEEeCCe
Q 005807 188 EAVITVPAYFNDAQRQATKDAGRIAGLDVQRI---INEPTAAALSYGMN---NKEG-LIAVFDLGGGTFDVSVLEISNGV 260 (676)
Q Consensus 188 ~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~AAal~y~~~---~~~~-~vlV~D~GgGT~Dvsv~~~~~~~ 260 (676)
.++||=-..-...+|..+..-...||==++.- -.|+.-|.-..+.. .+.. .++=+|+||||+..+++...+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk-- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK-- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc--
Confidence 45666666566666666666555665333221 13444443333322 1222 789999999999999965432
Q ss_pred EEEEEecCCCCcchHHH
Q 005807 261 FEVKATNGDTFLGGEDF 277 (676)
Q Consensus 261 ~~v~~~~g~~~lGG~~~ 277 (676)
+..+ .+.++||+-+
T Consensus 167 --v~dT-aCLdiGGRLi 180 (473)
T COG4819 167 --VSDT-ACLDIGGRLI 180 (473)
T ss_pred --cccc-eeeecCcEEE
Confidence 1222 2356777644
No 100
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=91.78 E-value=1.2 Score=44.04 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeCCCCCHH-HHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCcee
Q 005807 171 LTKMKETAESYLGKSVSEAVITVPAYFNDA-QRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTF 249 (676)
Q Consensus 171 L~~l~~~a~~~l~~~~~~~VITVPa~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~ 249 (676)
..++.+.+++..+.++ .++++-..|... .....++.|. |++ .|.-.+......+.++++|+|..|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aNW----------~Ata~~~~e~~~dsci~VD~GSTTt 142 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-ANW----------VATARFLAEEIKDSCILVDMGSTTT 142 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hhh----------HHHHHHHHHhcCCceEEEecCCccc
Confidence 4567777777777665 788888888764 2221222111 111 1111111122335799999999999
Q ss_pred EEEEEE
Q 005807 250 DVSVLE 255 (676)
Q Consensus 250 Dvsv~~ 255 (676)
|+.-+.
T Consensus 143 DIIPi~ 148 (330)
T COG1548 143 DIIPIK 148 (330)
T ss_pred ceEeec
Confidence 998654
No 101
>PRK09604 UGMP family protein; Validated
Probab=91.53 E-value=21 Score=37.75 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHh---CCCCCCCC---CcchhHhhHHHHH
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIF---GKSPSKGV---NPDEAVALGAAIQ 423 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~f---g~~~~~~~---~p~~aVa~GAal~ 423 (676)
+++.|+|.||.+...++++.|.+.+ +.++..+. --|.+++.|++=+
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~ 305 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGY 305 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHH
Confidence 4688999999999999999999988 44443332 3477888888743
No 102
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=91.48 E-value=1.3 Score=42.54 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCeEEeeChhHHHHHh
Q 005807 200 AQRQATKDAGRIAGLDVQRIINEPTAAALS 229 (676)
Q Consensus 200 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~ 229 (676)
...+.+.++.+.+||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 357788999999999999999999998764
No 103
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=90.65 E-value=0.7 Score=49.87 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=56.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCc-CCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 351 ETLVNHLIERTKAPCKNCLKDANITI-KDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
+.+++..++.+.-..+++++...-+. ..++.+-+=||.+++.++.+...+.+|.++.++.+ .|+.|+|||+.|+.-.+
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lAGla~G 452 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHHHhhhhC
Confidence 34455555555555444444322111 25788889999999999999999999988776655 56789999999998766
Q ss_pred CC
Q 005807 430 DV 431 (676)
Q Consensus 430 ~~ 431 (676)
-.
T Consensus 453 ~w 454 (499)
T COG0554 453 FW 454 (499)
T ss_pred cC
Confidence 43
No 104
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=90.58 E-value=5.5 Score=40.06 Aligned_cols=48 Identities=23% Similarity=0.242 Sum_probs=37.2
Q ss_pred CcCCCcEEEEEcCCcCcHHHHHHHHHHhC----CCCCCCCCcchhHhhHHHH
Q 005807 375 TIKDVDEVLLVGGMTRVPKVQEIVTEIFG----KSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 375 ~~~~i~~ViLvGG~s~~p~i~~~l~~~fg----~~~~~~~~p~~aVa~GAal 422 (676)
-+..+|.|+|+||.++...+-++|.+... .-++-..+-.+|.|.|+..
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 34678999999999999999999998874 2223345667789999854
No 105
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=90.05 E-value=8.1 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.344 Sum_probs=19.3
Q ss_pred CCCCceEEEEcCCceEEEEEEEC
Q 005807 50 PAGNDVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 50 ~~~~~vvGID~GTt~s~va~~~~ 72 (676)
....+++|||+|.|++.+++++.
T Consensus 15 ~~~~~~L~iDIGGT~ir~al~~~ 37 (638)
T PRK14101 15 HADGPRLLADVGGTNARFALETG 37 (638)
T ss_pred CCCCCEEEEEcCchhheeeeecC
Confidence 44567999999999999999853
No 106
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=89.52 E-value=0.31 Score=52.78 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCcCC--CcEEEEEcCCcCcHHHHHHHHHHh------C--CCCCCCCCcchhHhhHHHHHhhh
Q 005807 361 TKAPCKNCLKDANITIKD--VDEVLLVGGMTRVPKVQEIVTEIF------G--KSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 361 i~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~i~~~l~~~f------g--~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+.+++..+|.....+... ++.|+|+||+|.+|.+...|+..+ | ..+....||....=+||+-+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 344555555554322222 799999999999999999998876 2 23456789999999999999886
No 107
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=89.39 E-value=0.11 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=17.9
Q ss_pred eEEEEcCCceEEEEEEECCceE
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPK 76 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~ 76 (676)
|++||+|++.++++++..+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~ 22 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG 22 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCC
Confidence 6899999999999999876544
No 108
>PRK14878 UGMP family protein; Provisional
Probab=88.85 E-value=34 Score=36.01 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIF 402 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~f 402 (676)
.++.|+|+||-+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999987
No 109
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=88.22 E-value=0.95 Score=46.76 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCeEEeeChhHHHHHhc-ccc---CCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHH
Q 005807 203 QATKDAGRIAGLDVQRIINEPTAAALSY-GMN---NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFD 278 (676)
Q Consensus 203 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~---~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D 278 (676)
..+.+.-+..|+++. +|+..+=|.+.| +.. ...+..+|+|+|||++.+++++- +.+.- ..+.++|.-.+.
T Consensus 75 ~~~~~i~~~tGi~i~-iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~--~~~~~---~~Sl~lG~vrl~ 148 (285)
T PF02541_consen 75 EFLDRIKKETGIDIE-IISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN--GKVVF---SQSLPLGAVRLT 148 (285)
T ss_dssp HHHHHHHHHHSS-EE-EE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET--TEEEE---EEEES--HHHHH
T ss_pred HHHHHHHHHhCCceE-EecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC--CeeeE---eeeeehHHHHHH
Confidence 344555566799874 455444444333 221 12348999999999999998653 32211 223578887776
Q ss_pred HHH
Q 005807 279 NAL 281 (676)
Q Consensus 279 ~~l 281 (676)
+.+
T Consensus 149 e~~ 151 (285)
T PF02541_consen 149 ERF 151 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 110
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=86.29 E-value=5.3 Score=42.74 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=21.6
Q ss_pred CCCCCCCCCCceEEEEcCCceEEEEEEE
Q 005807 44 RPFSARPAGNDVIGVDLGTTNSCVAVME 71 (676)
Q Consensus 44 ~~~~~~~~~~~vvGID~GTt~s~va~~~ 71 (676)
.+++.......++.||||.||.+++++.
T Consensus 66 ~~~p~g~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 66 APLPTGNESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred cCCCCCCCCCCEEEEecCCceEEEEEEE
Confidence 3444444567899999999999999874
No 111
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=85.94 E-value=3.9 Score=41.77 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=44.5
Q ss_pred CcEEEEEcC--CcCcH-HHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEE
Q 005807 379 VDEVLLVGG--MTRVP-KVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLL 436 (676)
Q Consensus 379 i~~ViLvGG--~s~~p-~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~ 436 (676)
...|+|.|- +.+.| .+++.|++.|..++. .+.. +..|.|+|+.|--+.+..++++=
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-ksAA~G~AiIA~dI~gGk~~iLG 321 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-ESAAIGLALIAEDIFSGKREILG 321 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-hhhhhhHHHHHHHHhCCcceEee
Confidence 358999987 99999 999999999985433 3333 77899999999988887777653
No 112
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=85.81 E-value=11 Score=40.31 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=56.4
Q ss_pred EEEcHHHHHHHHhHHHHHHHH-HHHHHHHHcCCCcCCCcE-EEEEcCCcCcHHHHHHHHHHhCC-CCCC-CCCcchhHhh
Q 005807 343 ITLTRSKFETLVNHLIERTKA-PCKNCLKDANITIKDVDE-VLLVGGMTRVPKVQEIVTEIFGK-SPSK-GVNPDEAVAL 418 (676)
Q Consensus 343 ~~itr~~fe~~~~~~v~~i~~-~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~i~~~l~~~fg~-~~~~-~~~p~~aVa~ 418 (676)
..-.+.++-..++..+++++- .++..+++.+. +. |.|.||.+..-..-..|.+..+. ++.. +.-.|..++.
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~-----~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTGI-----DNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 345677888778887776654 45566666653 45 99999999999998888888653 3444 4455778999
Q ss_pred HHHHHhhhccC
Q 005807 419 GAAIQGGILRG 429 (676)
Q Consensus 419 GAal~a~~l~~ 429 (676)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999886443
No 113
>PLN02666 5-oxoprolinase
Probab=85.68 E-value=15 Score=45.75 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=49.3
Q ss_pred EcHHHHHHHHhHHH-HHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC-CCCCCCcchhHhhHHHH
Q 005807 345 LTRSKFETLVNHLI-ERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS-PSKGVNPDEAVALGAAI 422 (676)
Q Consensus 345 itr~~fe~~~~~~v-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~-~~~~~~p~~aVa~GAal 422 (676)
++.++...-+..++ +...+.|+.+....+.++.+ -.++..||.+ |...-.|.+.+|.+ ++.+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444443333333 34445566666666766544 3444455554 88888999999976 77888999999999976
No 114
>PRK00976 hypothetical protein; Provisional
Probab=84.23 E-value=6.8 Score=40.81 Aligned_cols=56 Identities=27% Similarity=0.359 Sum_probs=43.5
Q ss_pred CCcEEEEEcCCcCcH--HHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeE
Q 005807 378 DVDEVLLVGGMTRVP--KVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELL 435 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p--~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~ 435 (676)
+++.|+|-||-++.+ .+.+.+++.+... ...-...+-++|||+.|..+.+..++++
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G~~~il 320 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNGKKDIL 320 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCCCceee
Confidence 468999999999998 8888998888543 2333458999999999988776666654
No 115
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=83.58 E-value=5.5 Score=42.28 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=81.2
Q ss_pred CCCceEEEEcCCceEEEEEEE-CCc----eEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhc
Q 005807 51 AGNDVIGVDLGTTNSCVAVME-GKN----PKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIG 125 (676)
Q Consensus 51 ~~~~vvGID~GTt~s~va~~~-~~~----~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg 125 (676)
...++|-||=|+|.|.|-+|. +.. +-.+..+-=....|-.-+| ..+|......++.||.
T Consensus 65 ~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsf----------------addp~~aA~Sl~~LLd 128 (453)
T KOG1385|consen 65 KRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSF----------------ADDPEEAANSLRPLLD 128 (453)
T ss_pred ceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCccccc----------------CCChHHHHHhHHHHHH
Confidence 356899999999999998874 221 1111111101112333333 3345555556666663
Q ss_pred CCCCCHHHHHHhccCCeEEEeCCCCCe-EEE-eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHH
Q 005807 126 RRFNDAQTQKEMKMVPFKIVNAPNGDA-WVE-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQ 203 (676)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~ 203 (676)
.. ....|....+ ..+ .++ .-|-.+.|.+-+..+|..+++..+....-.+..-.++|=.
T Consensus 129 ~A---------~~~vP~~~~~---kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~-------- 188 (453)
T KOG1385|consen 129 VA---------EAFVPREHWK---KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMD-------- 188 (453)
T ss_pred HH---------HhhCCHhHhc---cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeecc--------
Confidence 22 1122222111 111 233 4567788999999999999998874333222221122211
Q ss_pred HHHHHHHHcCCCeEEeeChhHHHH--Hhcccc---CC-CCeEEEEeeCCceeEEEEEE
Q 005807 204 ATKDAGRIAGLDVQRIINEPTAAA--LSYGMN---NK-EGLIAVFDLGGGTFDVSVLE 255 (676)
Q Consensus 204 ~l~~Aa~~AGl~~~~li~Ep~AAa--l~y~~~---~~-~~~vlV~D~GgGT~Dvsv~~ 255 (676)
-..|-.-|- +.|... .. ...+.|+|+|||+|.++..-
T Consensus 189 ---------------GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 189 ---------------GTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ---------------CcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 112222111 223222 12 23899999999999999865
No 116
>PLN02920 pantothenate kinase 1
Probab=82.50 E-value=8.2 Score=41.15 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=37.6
Q ss_pred CCCcEEEEEcCCcCcH-HHHHHHHHHh------CCCCCCCCCcchhHhhHHHHHhh
Q 005807 377 KDVDEVLLVGGMTRVP-KVQEIVTEIF------GKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 377 ~~i~~ViLvGG~s~~p-~i~~~l~~~f------g~~~~~~~~p~~aVa~GAal~a~ 425 (676)
.+++.|+++|.+.+.+ ..++.|.-.+ ..+....-+.....|.||++...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 6789999999999998 7777554333 24556678899999999987644
No 117
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=81.35 E-value=69 Score=33.38 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIF 402 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~f 402 (676)
.++.|+|+||.+...++++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 118
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=81.22 E-value=7.7 Score=41.32 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=46.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC----CCCcchhHhhHHHHHhhh
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK----GVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~----~~~p~~aVa~GAal~a~~ 426 (676)
+++.-+.+-+...|.+.++... ...+.|+++||+++.|.|.++|++.++.++.. ..+++.-=|..-|++|..
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3444455555555666665433 22468999999999999999999999633322 245555555666666654
No 119
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=80.97 E-value=1.8 Score=43.52 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.7
Q ss_pred ceEEEEcCCceEEEEEEECC
Q 005807 54 DVIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~ 73 (676)
+++|||+|||++++++++..
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 58999999999999998843
No 120
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.72 E-value=36 Score=29.83 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-------------cCCCHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH
Q 005807 577 LIDIRNNADTTIYSIEKSLGEYR-------------EKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKI 643 (676)
Q Consensus 577 ~~~~~n~le~~i~~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i 643 (676)
....|-.+|.-+.+++..|+++. +.+-.-.++++.+.|++=.+.|+-. ...++..-+.+++.+..+
T Consensus 25 ~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~r-i~tLekQe~~l~e~l~eL 103 (119)
T COG1382 25 VILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELR-IKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34445556666666666664432 1122234555555555555555432 555566666666666666
Q ss_pred HHHHhcCCCCCC
Q 005807 644 GQHMAGGSSDNS 655 (676)
Q Consensus 644 ~~~~~~~~~~~~ 655 (676)
-..+++..++.+
T Consensus 104 q~~i~~~l~~~~ 115 (119)
T COG1382 104 QSEIQKALGDAA 115 (119)
T ss_pred HHHHHHHhhccc
Confidence 666665444333
No 121
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=80.50 E-value=5.2 Score=42.66 Aligned_cols=74 Identities=24% Similarity=0.266 Sum_probs=46.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC-CCCC----CCCcchhHhhHHHHHh
Q 005807 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK-SPSK----GVNPDEAVALGAAIQG 424 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~-~~~~----~~~p~~aVa~GAal~a 424 (676)
-++++..+.+-+...|.+.++.... +++.|+++||+++.|.|.+.|++.++. ++.. .++|+.-=|.+-|++|
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 3445555566666666666666542 368999999999999999999999965 3321 2444444455556666
Q ss_pred hh
Q 005807 425 GI 426 (676)
Q Consensus 425 ~~ 426 (676)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 122
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=80.34 E-value=78 Score=32.93 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCCeEEEEeCCCCCHHH------------HHHHHHHH-HHcCCCeEEeeChhHHHHHhcccc---CCCCeEEEEeeCCce
Q 005807 185 SVSEAVITVPAYFNDAQ------------RQATKDAG-RIAGLDVQRIINEPTAAALSYGMN---NKEGLIAVFDLGGGT 248 (676)
Q Consensus 185 ~~~~~VITVPa~~~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~---~~~~~vlV~D~GgGT 248 (676)
++..+.|++|...+... .-.+++.. +..|++ +.+.|+..|+|++-... +..++++++.+|.|-
T Consensus 57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi 135 (318)
T TIGR00744 57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL 135 (318)
T ss_pred ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc
Confidence 45567788886553211 11233332 344776 57999999999864322 223488888888775
Q ss_pred eEEEEE
Q 005807 249 FDVSVL 254 (676)
Q Consensus 249 ~Dvsv~ 254 (676)
..+++
T Consensus 136 -G~giv 140 (318)
T TIGR00744 136 -GGGII 140 (318)
T ss_pred -EEEEE
Confidence 45544
No 123
>PLN02405 hexokinase
Probab=78.48 E-value=25 Score=39.20 Aligned_cols=55 Identities=24% Similarity=0.240 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHcCCC--eEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEE
Q 005807 198 NDAQRQATKDAGRIAGLD--VQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSV 253 (676)
Q Consensus 198 ~~~qr~~l~~Aa~~AGl~--~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv 253 (676)
...-.+.+.+|...-|++ ++.|+|+.++..++...... +..+=+=+|-||=-+-+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~-~~~iG~IlGTGtNacY~ 260 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP-DVVAAVILGTGTNAAYV 260 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC-CceEEEEEeCCeeeEEE
Confidence 455678889999888985 57799999998887665543 23333335666544443
No 124
>PLN02362 hexokinase
Probab=78.45 E-value=7.2 Score=43.48 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=23.8
Q ss_pred ccccCCCCCCCCCCceEEEEcCCceEEEEEEE
Q 005807 40 ASLARPFSARPAGNDVIGVDLGTTNSCVAVME 71 (676)
Q Consensus 40 ~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~ 71 (676)
|+.....|+.......++||||.||..|+.+.
T Consensus 82 PTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 82 LTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQ 113 (509)
T ss_pred cCccCCCCCCCcceeEEEEecCCceEEEEEEE
Confidence 44444455545567799999999999999875
No 125
>PLN02596 hexokinase-like
Probab=78.32 E-value=6.2 Score=43.75 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=24.6
Q ss_pred cccccCCCCCCCCCCceEEEEcCCceEEEEEEE
Q 005807 39 WASLARPFSARPAGNDVIGVDLGTTNSCVAVME 71 (676)
Q Consensus 39 ~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~ 71 (676)
.|+.....|+.......++||||.||..|+.+.
T Consensus 82 lpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~ 114 (490)
T PLN02596 82 LVSYVASLPSGDEKGLYYGLNLRGSNFLLLRAR 114 (490)
T ss_pred ecccCCCCCCCCcceEEEEEeeCCceEEEEEEE
Confidence 344444555555567789999999999999874
No 126
>PRK03011 butyrate kinase; Provisional
Probab=76.65 E-value=8.8 Score=40.97 Aligned_cols=46 Identities=28% Similarity=0.340 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhC----CCCCCCCCcchhHhhHHHHH
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFG----KSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg----~~~~~~~~p~~aVa~GAal~ 423 (676)
+++.|+|.||.+..+.+++.|++.+. ..+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 57999999999999999999988874 22334455667999998753
No 127
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=76.08 E-value=1.4e+02 Score=33.46 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=58.3
Q ss_pred EEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHH-HHHHHHhCCCCCCCCC-cchhHhhHH
Q 005807 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQ-EIVTEIFGKSPSKGVN-PDEAVALGA 420 (676)
Q Consensus 343 ~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~-~~l~~~fg~~~~~~~~-p~~aVa~GA 420 (676)
......++...++..++++...+...+.+... ...+.+.||.+..-..- +.+.+.+...+...+. .|.-.|.||
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHH
Confidence 34445567777778888777776666665321 47999999998877776 7777777766665544 466799999
Q ss_pred HHHhhhcc
Q 005807 421 AIQGGILR 428 (676)
Q Consensus 421 al~a~~l~ 428 (676)
|+++....
T Consensus 330 Al~~~~~~ 337 (555)
T COG2192 330 ALAVKREL 337 (555)
T ss_pred HHHHHHHh
Confidence 99887544
No 128
>PLN02914 hexokinase
Probab=75.48 E-value=31 Score=38.36 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=39.1
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCC--eEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEE
Q 005807 192 TVPAYFNDAQRQATKDAGRIAGLD--VQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVL 254 (676)
Q Consensus 192 TVPa~~~~~qr~~l~~Aa~~AGl~--~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~ 254 (676)
.++..-...-.+.+.+|.+.-|++ +..|+|+.++..++...... +..+=+=+|-||=-+-+-
T Consensus 198 ~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~-~~~iGlIlGTGtNacY~E 261 (490)
T PLN02914 198 AVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD-DVMVAVILGTGTNACYVE 261 (490)
T ss_pred ccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC-CceEEEEEECCeeeEEEe
Confidence 333334455678889998888874 67799999998887665543 223333356665444443
No 129
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=75.09 E-value=3.4 Score=34.73 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.8
Q ss_pred ceEEEEcCCceEEEEEEEC
Q 005807 54 DVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~ 72 (676)
.++|||+|.|++++|+.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 4899999999999999764
No 130
>PTZ00107 hexokinase; Provisional
Probab=71.63 E-value=11 Score=41.70 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=42.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH----HHHcCCCcCCCcEEEEEcCC--cCcHHHHHHHHHHhC----CC--CCCCCCcch
Q 005807 347 RSKFETLVNHLIERTKAPCKNC----LKDANITIKDVDEVLLVGGM--TRVPKVQEIVTEIFG----KS--PSKGVNPDE 414 (676)
Q Consensus 347 r~~fe~~~~~~v~~i~~~i~~~----l~~~~~~~~~i~~ViLvGG~--s~~p~i~~~l~~~fg----~~--~~~~~~p~~ 414 (676)
+.-+..+|+-+..|...++.-. +.+.+.. .-...|-+-|+ -..|..++.+++.+. .+ .+.-.-.+.
T Consensus 370 ~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~--~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~D 447 (464)
T PTZ00107 370 LYTIRKICELVRGRAAQLAAAFIAAPAKKTRTV--QGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADD 447 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccC
Confidence 3344555666666655544333 3333321 11244444444 347777777776663 22 222334566
Q ss_pred hHhhHHHHHhhhc
Q 005807 415 AVALGAAIQGGIL 427 (676)
Q Consensus 415 aVa~GAal~a~~l 427 (676)
..-.|||+.||..
T Consensus 448 GSg~GAAl~AA~~ 460 (464)
T PTZ00107 448 GSGKGAAIIAAMV 460 (464)
T ss_pred chHHHHHHHHHHh
Confidence 7889999998864
No 131
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=71.30 E-value=3.7 Score=46.39 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.5
Q ss_pred CceEEEEcCCceEEEEEEECC
Q 005807 53 NDVIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~ 73 (676)
.+++|||+|||++++++++..
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 479999999999999998754
No 132
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=70.52 E-value=1.4e+02 Score=30.91 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCc-HHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 356 HLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRV-PKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 356 ~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~-p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
.++++....|...++...+ ......+.|.||.... |++.....+..-.++ .--+..||.+.|...
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~~ 292 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHHh
Confidence 4555566666666665432 2345789999999877 888888877764433 555778888887643
No 133
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=70.26 E-value=83 Score=33.32 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=34.8
Q ss_pred CCCcEEEEEcCCcCc-HHHHHHHH---HHhC---CCCCCCCCcchhHhhHHHHH
Q 005807 377 KDVDEVLLVGGMTRV-PKVQEIVT---EIFG---KSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 377 ~~i~~ViLvGG~s~~-p~i~~~l~---~~fg---~~~~~~~~p~~aVa~GAal~ 423 (676)
.+++.|+++|.+-+. |..++.|. +++. .++....|...+.|.||.+.
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 567999999999875 78888888 5553 33456678999999999875
No 134
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=70.06 E-value=15 Score=38.59 Aligned_cols=71 Identities=24% Similarity=0.397 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC---CCCCCCc----chhHhhHHHHHhhhc
Q 005807 355 NHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS---PSKGVNP----DEAVALGAAIQGGIL 427 (676)
Q Consensus 355 ~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~---~~~~~~p----~~aVa~GAal~a~~l 427 (676)
+.+++.+.+.|...+.. ..+.+.|+|.|-.+++|-+.+.+++.|+.- ......+ ..-.|.|||+.|.-+
T Consensus 241 ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~gl 316 (343)
T PF07318_consen 241 EAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGL 316 (343)
T ss_pred HHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhh
Confidence 34444444444444433 245689999999999999998888887421 1122222 234799999999877
Q ss_pred cC
Q 005807 428 RG 429 (676)
Q Consensus 428 ~~ 429 (676)
.+
T Consensus 317 aG 318 (343)
T PF07318_consen 317 AG 318 (343)
T ss_pred hc
Confidence 76
No 135
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=69.85 E-value=34 Score=36.10 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=39.6
Q ss_pred cCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCC----CCCCcchhHhhHHHHHhhh
Q 005807 376 IKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPS----KGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 376 ~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~----~~~~p~~aVa~GAal~a~~ 426 (676)
..+.+.++++||+.+.|++.+.|...+. ..+. ..++++..=|.+-|+.|..
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r 343 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWR 343 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHH
Confidence 3566899999999999999999999994 3333 2467777777777777764
No 136
>PRK09557 fructokinase; Reviewed
Probab=69.46 E-value=53 Score=33.99 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCC---------CCCCCCCcchhHhhHHHHHh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGK---------SPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~---------~~~~~~~p~~aVa~GAal~a 424 (676)
+++.|+|-||.+..+.+...+++.+.. ++....-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 457888888888777666556555421 11222334667889998753
No 137
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=68.80 E-value=5.7 Score=35.94 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=18.5
Q ss_pred CceEEEEcCCceEEEEEEECCc
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKN 74 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~ 74 (676)
|.++|||+|+..+++|+.+...
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 3589999999999999987653
No 138
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.69 E-value=5.4 Score=46.07 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=29.0
Q ss_pred CeEEeeChhHHHHHhccccCCC--CeEEEEeeCCceeEEEEEE
Q 005807 215 DVQRIINEPTAAALSYGMNNKE--GLIAVFDLGGGTFDVSVLE 255 (676)
Q Consensus 215 ~~~~li~Ep~AAal~y~~~~~~--~~vlV~D~GgGT~Dvsv~~ 255 (676)
++..|.+=|.|..++....... ++++++|+||.|||++++.
T Consensus 254 pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 254 PVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALII 296 (674)
T ss_pred CeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeee
Confidence 3445677777776654443111 1599999999999999976
No 139
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=68.24 E-value=1.6e+02 Score=30.94 Aligned_cols=214 Identities=15% Similarity=0.194 Sum_probs=106.7
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHh---CC---CCCeEEEEeCCCCCHHHHHH---HHHHHHHcCCCeEEeeChhHHHHHhc
Q 005807 160 QYSPSQIGAFVLTKMKETAESYL---GK---SVSEAVITVPAYFNDAQRQA---TKDAGRIAGLDVQRIINEPTAAALSY 230 (676)
Q Consensus 160 ~~~~~ev~a~~L~~l~~~a~~~l---~~---~~~~~VITVPa~~~~~qr~~---l~~Aa~~AGl~~~~li~Ep~AAal~y 230 (676)
.+-|+..+....+.+-...++.+ +. .++-+.+|.=......=+-- -|.-+...+.+ +.-+|--.+=.++-
T Consensus 40 GVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kP-li~VnH~~gHi~a~ 118 (342)
T COG0533 40 GVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKP-LIPVNHLEGHIEAA 118 (342)
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCC-EeecchHHHHHHHH
Confidence 46788888887777666555444 32 45556666544444332211 12222223333 34455555544433
Q ss_pred cccCC-CCeEEEEeeCCceeEEEEEEEeC-CeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHH
Q 005807 231 GMNNK-EGLIAVFDLGGGTFDVSVLEISN-GVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLR 308 (676)
Q Consensus 231 ~~~~~-~~~vlV~D~GgGT~Dvsv~~~~~-~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~ 308 (676)
.+..+ .-.++.+=+-||.|.+.. +.+ +.+++++..-|..+ |+.||. +.+..+......| ...
T Consensus 119 ~l~~~~~~p~v~LlVSGGHTqli~--~~~~g~y~ilGeTlDdA~-Gea~DK---------vAR~lGL~yPGGp-~Ie--- 182 (342)
T COG0533 119 RLETGLAFPPVALLVSGGHTQLIA--VRGIGRYEVLGETLDDAA-GEAFDK---------VARLLGLGYPGGP-AIE--- 182 (342)
T ss_pred HhccCCCCCcEEEEEecCceEEEE--EcCCCcEEEEeeechhhh-hHHHHH---------HHHHhCCCCCCcH-HHH---
Confidence 33322 223344444566665544 344 66888887765544 455553 3333344444333 111
Q ss_pred HHHHHHHHHcCCCCceeeeccccccCCCCCeeeE------------------EEEcHHHHHHHHh----HHHHHHHHHHH
Q 005807 309 ESAEKAKIELSSTSQTEINLPFITADASGAKHLN------------------ITLTRSKFETLVN----HLIERTKAPCK 366 (676)
Q Consensus 309 ~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~------------------~~itr~~fe~~~~----~~v~~i~~~i~ 366 (676)
+.|++-.. . .+.+|....... ..|++ ..+..++.++++. ..++-+.+..+
T Consensus 183 ~lA~~G~~------~-~~~fP~~~~~~~-~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~ 254 (342)
T COG0533 183 KLAKKGDP------D-AFEFPRPMVKGK-NLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTE 254 (342)
T ss_pred HHHhcCCC------C-ceeCCccccCCC-CcceehHhHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222110 0 122222110000 01111 1222334444443 34555556666
Q ss_pred HHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 367 NCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 367 ~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
++++..+ .+.++++||-+....+|+++++...
T Consensus 255 rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 255 RALKHTG-----KKELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred HHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHH
Confidence 7777654 4789999999999999999998773
No 140
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=66.92 E-value=1.7e+02 Score=30.62 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=33.7
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHh---CCCCCCCC---CcchhHhhHHH
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIF---GKSPSKGV---NPDEAVALGAA 421 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~f---g~~~~~~~---~p~~aVa~GAa 421 (676)
.++.|+|.||.+...++++.|.+.+ +.++..+. --|.+++.|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 4678999999999999999999988 44433332 34677888776
No 141
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=66.30 E-value=14 Score=43.15 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhC---CCCCCC---CCcchhHhhHHHHHhh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFG---KSPSKG---VNPDEAVALGAAIQGG 425 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg---~~~~~~---~~p~~aVa~GAal~a~ 425 (676)
.++.|+|+||.....++++.|.+.++ .+++.+ .--|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998874 333332 3457899999988774
No 142
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=62.13 E-value=7.5 Score=41.48 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.3
Q ss_pred CceEEEEcCCceEEEEEEECCc
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKN 74 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~ 74 (676)
.+++|||+|+|.+++.++++++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 4799999999999999988754
No 143
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=61.33 E-value=27 Score=26.53 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 005807 177 TAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDV 216 (676)
Q Consensus 177 ~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~ 216 (676)
..+.++... ...++.|+.++..+|..+.+.|+..||..
T Consensus 7 ~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 7 ALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 334444433 67899999999999999999999999964
No 144
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=61.27 E-value=8 Score=40.35 Aligned_cols=31 Identities=19% Similarity=0.034 Sum_probs=22.3
Q ss_pred hHHHHHhccccCCCCeEEEEeeCCceeEEEEEE
Q 005807 223 PTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLE 255 (676)
Q Consensus 223 p~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~ 255 (676)
+.|.|...+.. .++++++||||.|+|++++.
T Consensus 116 ~~a~A~~la~~--~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 116 WLATAQLIAKR--IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred HHHHHHHHHhc--CCCEEEEEcCccceeeEEec
Confidence 55544434332 34799999999999999964
No 145
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=60.60 E-value=11 Score=34.30 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.6
Q ss_pred CceEEEEcCCceEEEEEEEC
Q 005807 53 NDVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~ 72 (676)
+.++|||+|+..+++|+.+.
T Consensus 4 ~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CcEEEEEeCCCEEEEEEecC
Confidence 45999999999999999765
No 146
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=58.77 E-value=2.5e+02 Score=29.82 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=58.4
Q ss_pred eCHHHHHHHHHHHHHHHHHHHh---C---CCCCeEEEEe-CCCCCHHH--HHHHHHHHHHcCCCeEEeeChhHHHHHhcc
Q 005807 161 YSPSQIGAFVLTKMKETAESYL---G---KSVSEAVITV-PAYFNDAQ--RQATKDAGRIAGLDVQRIINEPTAAALSYG 231 (676)
Q Consensus 161 ~~~~ev~a~~L~~l~~~a~~~l---~---~~~~~~VITV-Pa~~~~~q--r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~ 231 (676)
+-|++....-.+.|-...++.+ + .+++.+.+|. |.-|+.-- -..-+.-|...|.+. .-++--+|=+++-.
T Consensus 40 vvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Pl-igV~HlegHi~a~~ 118 (345)
T PTZ00340 40 FLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPL-VGVNHCVAHIEMGR 118 (345)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCE-eecchHHHHHHHHh
Confidence 3455554444444443333332 2 2355666666 55444222 222233444456554 34444444444322
Q ss_pred ccCCC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 005807 232 MNNKE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDN 279 (676)
Q Consensus 232 ~~~~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~ 279 (676)
+.... .. |++=+-||+|.+.. ...+.+++++..-|.. -|+.||.
T Consensus 119 l~~~~~~P-l~LlVSGGhT~l~~--~~~~~~~ilG~T~Dda-~Gea~DK 163 (345)
T PTZ00340 119 LVTGAENP-VVLYVSGGNTQVIA--YSEHRYRIFGETIDIA-VGNCLDR 163 (345)
T ss_pred hccCCCCC-eEEEEeCCceEEEE--ecCCeEEEEEeecccc-hhHHHHH
Confidence 22211 13 66777888888776 4557789998777554 4566664
No 147
>PRK07058 acetate kinase; Provisional
Probab=58.42 E-value=59 Score=34.97 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCc-CcHHHHHHHHHHhC
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMT-RVPKVQEIVTEIFG 403 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~i~~~l~~~fg 403 (676)
.++-++.++.+.|-...... ..+|.|+++||-+ ..+.+++.+.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44555666666666555544 3589999999999 99999999998774
No 148
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=57.55 E-value=2.1e+02 Score=29.65 Aligned_cols=125 Identities=20% Similarity=0.249 Sum_probs=0.0
Q ss_pred CCCCCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCC
Q 005807 49 RPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRF 128 (676)
Q Consensus 49 ~~~~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~ 128 (676)
.+.+.+++|||+|.|++.+++.+..+..+.. .-...+...
T Consensus 2 ~~~~~~~lgidIggt~i~~~l~d~~g~~l~~----------~~~~~~~~~------------------------------ 41 (314)
T COG1940 2 NPEAMTVLGIDIGGTKIKVALVDLDGEILLR----------ERIPTPTPD------------------------------ 41 (314)
T ss_pred CccCcEEEEEEecCCEEEEEEECCCCcEEEE----------EEEecCCCC------------------------------
Q ss_pred CCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHH-hCCCCCeEEEEeCCCCCHHH------
Q 005807 129 NDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESY-LGKSVSEAVITVPAYFNDAQ------ 201 (676)
Q Consensus 129 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~-l~~~~~~~VITVPa~~~~~q------ 201 (676)
..+.+...++..+++....+ .......+.++.|...+...
T Consensus 42 ---------------------------------~~~~~~~~i~~~i~~~~~~~~~~~~~iGIgi~~pg~~~~~~~~~~~~ 88 (314)
T COG1940 42 ---------------------------------PEEAILEAILALVAELLKQAQGRVAIIGIGIPGPGDVDNGTVIVPAP 88 (314)
T ss_pred ---------------------------------chhHHHHHHHHHHHHHHHhcCCcCceEEEEeccceeccCCcEEeecC
Q ss_pred -------HHHHHHHHHHcCCCeEEeeChhHHHHHh---ccccCCCCeEEEEeeCCc
Q 005807 202 -------RQATKDAGRIAGLDVQRIINEPTAAALS---YGMNNKEGLIAVFDLGGG 247 (676)
Q Consensus 202 -------r~~l~~Aa~~AGl~~~~li~Ep~AAal~---y~~~~~~~~vlV~D~GgG 247 (676)
-..-..-.+..|+++ .+-|+..|+|++ ++..+..++++.+-+|-|
T Consensus 89 ~~~~~~~~~l~~~L~~~~~~Pv-~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG 143 (314)
T COG1940 89 NLGWWNGVDLAEELEARLGLPV-FVENDANAAALAEAWFGAGRGIDDVVYITLGTG 143 (314)
T ss_pred CCCccccccHHHHHHHHHCCCE-EEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc
No 149
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=57.04 E-value=29 Score=38.11 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=44.9
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCC---eEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEe
Q 005807 193 VPAYFNDAQRQATKDAGRIAGLD---VQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEIS 257 (676)
Q Consensus 193 VPa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~ 257 (676)
++......--+.+.+|.+.-|+. ++.++|+.++..+++..... +.++=+=+|.||=-+-+.+..
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~-~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP-NCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC-CcEEEEEECCCccceeeeecc
Confidence 34444455567888888888885 67799999999887766554 445555578888766666554
No 150
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=55.55 E-value=13 Score=33.84 Aligned_cols=21 Identities=29% Similarity=0.348 Sum_probs=18.2
Q ss_pred CceEEEEcCCceEEEEEEECC
Q 005807 53 NDVIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~ 73 (676)
+.++|||+||-.+++|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 469999999999999997653
No 151
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=55.27 E-value=15 Score=33.93 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=0.0
Q ss_pred eEEEEcCCceEEEEEEE--CCceEEEe
Q 005807 55 VIGVDLGTTNSCVAVME--GKNPKVIE 79 (676)
Q Consensus 55 vvGID~GTt~s~va~~~--~~~~~vi~ 79 (676)
|+|||.|++++++|+.+ ++.+.++.
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~ 28 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLA 28 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEE
No 152
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=54.07 E-value=14 Score=40.83 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.8
Q ss_pred EEEEcCCceEEEEEEEC
Q 005807 56 IGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 56 vGID~GTt~s~va~~~~ 72 (676)
+|||+|||++++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998864
No 153
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=53.40 E-value=2.7e+02 Score=28.64 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHh
Q 005807 605 EVAKEIEDAVSDLRKAMAGED--IDGIKAKLDAANKAVSKIGQHMA 648 (676)
Q Consensus 605 ~~~~~~~~~~~~~~~wl~~~~--~~~~~~~~~~L~~~~~~i~~~~~ 648 (676)
++.-.++..|+.+...+..+. .-.++.+.+.|++....=.+++.
T Consensus 230 ~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~is 275 (372)
T COG3524 230 DELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAIS 275 (372)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 455566666777777774443 66777888888776665555543
No 154
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=53.29 E-value=11 Score=35.28 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.6
Q ss_pred CceEEEEcCCceEEEEEEEC
Q 005807 53 NDVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~ 72 (676)
+.|+|||-|++++++|+.+.
T Consensus 2 m~iLGIDPgl~~tG~avi~~ 21 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEV 21 (164)
T ss_pred CEEEEEccccCceeEEEEEe
Confidence 46999999999999999764
No 155
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=52.78 E-value=2e+02 Score=29.67 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCC---------CCCCCCCcchhHhhHHHHHhh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGK---------SPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~---------~~~~~~~p~~aVa~GAal~a~ 425 (676)
+++.|+|-||.+..+.+.+.|++.+.. ++......+.+.++|||..+.
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~l 301 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLHL 301 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHhh
Confidence 458888877777666666666665521 112233456788999998653
No 156
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=52.43 E-value=50 Score=25.17 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 005807 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDV 216 (676)
Q Consensus 175 ~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~ 216 (676)
.+....+.... ....++.|..++..+|..+.+.|+..||..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 44445555433 467899999999999999999999999975
No 157
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.40 E-value=1e+02 Score=30.99 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=52.9
Q ss_pred eCCCCCHHHHHHHHHHHHH---cCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCC
Q 005807 193 VPAYFNDAQRQATKDAGRI---AGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGD 269 (676)
Q Consensus 193 VPa~~~~~qr~~l~~Aa~~---AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~ 269 (676)
+|-+|+ .|+.|+.. ++-. ..+++--.||+..+..+......+|+|+|-|.+-.+++. ++.+.-+.....
T Consensus 186 iPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dpaa~palvVd~GngHttaalvd--edRI~gv~EHHT 257 (342)
T COG4012 186 IPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVD--EDRIVGVYEHHT 257 (342)
T ss_pred CchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEec--CCeEEEEeeccc
Confidence 455554 34444433 3333 345555566666666665555899999999999888854 444444434444
Q ss_pred CCcchHHHHHHHHHHHHHHh
Q 005807 270 TFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 270 ~~lGG~~~D~~l~~~l~~~~ 289 (676)
..+.-+.+-..|.++..-++
T Consensus 258 ~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 258 IRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred ccCCHHHHHHHHHHHHhccc
Confidence 56666666555555554443
No 158
>PLN02669 xylulokinase
Probab=51.41 E-value=15 Score=41.90 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.0
Q ss_pred CCceEEEEcCCceEEEEEEECC
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~ 73 (676)
..+++|||+||+.+++++++..
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCC
Confidence 4579999999999999998743
No 159
>PRK09698 D-allose kinase; Provisional
Probab=49.97 E-value=2.1e+02 Score=29.49 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=25.7
Q ss_pred cCCCeEEeeChhHHHHHhccccC--CCCeEEEEeeCCceeEEEE
Q 005807 212 AGLDVQRIINEPTAAALSYGMNN--KEGLIAVFDLGGGTFDVSV 253 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~~~~--~~~~vlV~D~GgGT~Dvsv 253 (676)
.|++ +.+.|+..|+|++-.... ...+++.+.+|.| .-.++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~gi 145 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAV 145 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEE
Confidence 4776 579999999887532221 2237888888866 33344
No 160
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=48.94 E-value=1.5e+02 Score=29.18 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=45.5
Q ss_pred EEcHHHHH-HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC--CCCCCCcchhHhhHH
Q 005807 344 TLTRSKFE-TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS--PSKGVNPDEAVALGA 420 (676)
Q Consensus 344 ~itr~~fe-~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~--~~~~~~p~~aVa~GA 420 (676)
..|.+++- ++-+.++.-..+.-++++...+ -+.|++|||-...-.+|+++..+.... ....-|-..|+-.|+
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~ 298 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGV 298 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCch
Confidence 34444432 2223344444455556665544 278999999999999999999887422 223345555666666
Q ss_pred HH
Q 005807 421 AI 422 (676)
Q Consensus 421 al 422 (676)
-+
T Consensus 299 MI 300 (336)
T KOG2708|consen 299 MI 300 (336)
T ss_pred HH
Confidence 54
No 161
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=48.48 E-value=2.6e+02 Score=27.26 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005807 575 KTLIDIRNNADTTIYSIEKSLG 596 (676)
Q Consensus 575 ~~~~~~~n~le~~i~~~~~~l~ 596 (676)
.++.+++.+...++.+.+....
T Consensus 112 ~~L~~Ar~eA~~Ii~~Ar~ea~ 133 (204)
T PRK09174 112 QELAQARAKAHSIAQAAREAAK 133 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 162
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=48.07 E-value=36 Score=29.26 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=31.1
Q ss_pred eeEEEEEEcCC-ccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHh
Q 005807 516 QIEVTFDIDAN-GIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELH 567 (676)
Q Consensus 516 ~i~v~f~~d~~-g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 567 (676)
...+.|.+|.+ |.+.|.+.|..||+... .+..+++-++.+.+.++
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIR-------qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIR-------QIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEE-------EE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEE-------eCCcHHHHHHHHHHHHH
Confidence 35789999875 88999999999998753 35677777776665553
No 163
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=47.34 E-value=82 Score=30.73 Aligned_cols=52 Identities=23% Similarity=0.460 Sum_probs=32.9
Q ss_pred CeEEEEeeCCceeEEEEEEEeCC-eEEEEEecCCCC---cchHHHHHHHHHHHHHHhh
Q 005807 237 GLIAVFDLGGGTFDVSVLEISNG-VFEVKATNGDTF---LGGEDFDNALLEFLVSEFK 290 (676)
Q Consensus 237 ~~vlV~D~GgGT~Dvsv~~~~~~-~~~v~~~~g~~~---lGG~~~D~~l~~~l~~~~~ 290 (676)
+.+|++|+||.++-+.++++.+. .+++.......+ .-|. ...|.+|+.+.+.
T Consensus 63 G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~--~~~lFd~ia~~i~ 118 (206)
T PF00349_consen 63 GDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGS--GEELFDFIADCIA 118 (206)
T ss_dssp EEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSB--HHHHHHHHHHHHH
T ss_pred ceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCC--cccHHHHHHHHHH
Confidence 38999999999999999999876 444432221111 0111 1567777776653
No 164
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=46.96 E-value=51 Score=35.09 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC--CCC--CCCCCcchhHhhHHHH
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG--KSP--SKGVNPDEAVALGAAI 422 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg--~~~--~~~~~p~~aVa~GAal 422 (676)
+++.+..++...|-......+ .+++.|++.||.+..+.+++.+++.+. .++ +...+-.++.|.||..
T Consensus 271 a~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 271 ILDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 334444444444444444431 256999999999999999999998885 222 2233446678888753
No 165
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=46.33 E-value=78 Score=34.43 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=39.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC
Q 005807 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK 408 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~ 408 (676)
++++-+-+++.+..++.+.+.++++++.+|..++++|-.+..-.+.-.=-+.++..++.
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~~~Pf~ 113 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLGRAPFV 113 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGSSTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhccCCcc
Confidence 34556667788888999999999999999999999998776666555444455544444
No 166
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=45.84 E-value=49 Score=37.51 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHh---CCCCCCCC---CcchhHhhHHHHHhhh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIF---GKSPSKGV---NPDEAVALGAAIQGGI 426 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~f---g~~~~~~~---~p~~aVa~GAal~a~~ 426 (676)
.++.|+|+||-+...++++.|.+.+ +.+++.+. -.|.+++.|++.+...
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~ 299 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMY 299 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHH
Confidence 3578999999999999999999765 44444333 4578888888865443
No 167
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=45.75 E-value=3e+02 Score=27.76 Aligned_cols=117 Identities=20% Similarity=0.264 Sum_probs=61.7
Q ss_pred EEeCCeeeCHHHHHHHHHH--HHHHHHHHHhCCCCCeEEE--EeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHH-
Q 005807 154 VEANGQQYSPSQIGAFVLT--KMKETAESYLGKSVSEAVI--TVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAAL- 228 (676)
Q Consensus 154 v~~~~~~~~~~ev~a~~L~--~l~~~a~~~l~~~~~~~VI--TVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal- 228 (676)
+......++|. .+-...+ ++++..+ -+..+..++. .+|.+|+. -+++++.+...|.+. ++-+.-+||+
T Consensus 83 vAvQDHG~~p~-~SnR~~RF~~~~~~L~--~g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~--~vmDTg~AAvl 155 (254)
T PF08735_consen 83 VAVQDHGFSPG-QSNRIFRFELWREFLE--EGGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE--VVMDTGPAAVL 155 (254)
T ss_pred EEecccCCCCC-CccHHHHHHHHHHHHh--cCCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc--eEecCHHHHHh
Confidence 44555556665 3333333 2232221 1444567777 88988663 245556666666665 4444444444
Q ss_pred hccccCC---CCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 005807 229 SYGMNNK---EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDN 279 (676)
Q Consensus 229 ~y~~~~~---~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~ 279 (676)
....+.. .+.++|+|+|=|.|=..++ .++.+.=+.......+-...+..
T Consensus 156 Gal~d~~v~~~~~~~~vniGN~HTlaa~v--~~~rI~GvfEHHT~~l~~~kL~~ 207 (254)
T PF08735_consen 156 GALCDPEVSSREGIIVVNIGNGHTLAALV--KDGRIYGVFEHHTGMLTPEKLEE 207 (254)
T ss_pred hhhcChhhhccCCeEEEEeCCccEEEEEE--eCCEEEEEEecccCCCCHHHHHH
Confidence 3333322 2489999999998877776 34333222223334455544433
No 168
>PRK09343 prefoldin subunit beta; Provisional
Probab=44.97 E-value=2e+02 Score=25.39 Aligned_cols=43 Identities=2% Similarity=0.104 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHh
Q 005807 605 EVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMA 648 (676)
Q Consensus 605 ~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~ 648 (676)
.+++++.+.+++-.+.++. ....++.+.+.|++.+......+.
T Consensus 67 qd~~e~~~~l~~r~E~ie~-~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 67 VDKTKVEKELKERKELLEL-RSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555553 255555555555555555544443
No 169
>PLN03173 chalcone synthase; Provisional
Probab=42.64 E-value=79 Score=34.27 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCc-CcHHHHHHHHHHhCCCC
Q 005807 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMT-RVPKVQEIVTEIFGKSP 406 (676)
Q Consensus 354 ~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~i~~~l~~~fg~~~ 406 (676)
.+...+-..+.++++|+++++++.+|+.|+++.-+. ..|.+--.|.+.+|.+.
T Consensus 99 ~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 99 VVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 344555566778999999999999999998886544 58999999999998654
No 170
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=42.47 E-value=22 Score=34.75 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCC---eEEeeChhHHHHHhccc
Q 005807 200 AQRQATKDAGRIAGLD---VQRIINEPTAAALSYGM 232 (676)
Q Consensus 200 ~qr~~l~~Aa~~AGl~---~~~li~Ep~AAal~y~~ 232 (676)
.-.+.+.+|....|++ ++.++|+.+|..++...
T Consensus 169 dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 169 DVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred ccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3456677787777875 56799999998876543
No 171
>PLN03170 chalcone synthase; Provisional
Probab=42.45 E-value=68 Score=34.88 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCc-CcHHHHHHHHHHhCCCCC
Q 005807 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMT-RVPKVQEIVTEIFGKSPS 407 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~i~~~l~~~fg~~~~ 407 (676)
.+...+...+-..+..+++|+++++++++|+.|+++-.+. .+|.+--.|.+.+|.+..
T Consensus 99 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~ 157 (401)
T PLN03170 99 QDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPS 157 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCcc
Confidence 3333445556667788999999999999999998776544 699999999999986543
No 172
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=42.33 E-value=1e+02 Score=31.02 Aligned_cols=44 Identities=20% Similarity=0.355 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcC
Q 005807 347 RSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTR 390 (676)
Q Consensus 347 r~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 390 (676)
++..+.+...++......|+..+++.......=..++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 34555666666666666666666654322123379999999864
No 173
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=42.10 E-value=9.1 Score=41.68 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC------CC---------CCCCCCcchhHhhHHHHHh
Q 005807 360 RTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG------KS---------PSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 360 ~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg------~~---------~~~~~~p~~aVa~GAal~a 424 (676)
.|+..|..++.+- ....--+.|.+|||+...|.+...|++..- .+ +.+..||...+=.|||++|
T Consensus 509 sii~sid~~~sdd-~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla 587 (618)
T KOG0797|consen 509 SIISSIDSALSDD-TKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILA 587 (618)
T ss_pred hHHHhhhhhccch-hhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhh
Confidence 3444444444431 112235789999999999999999998763 11 1134789999999999998
Q ss_pred hhcc
Q 005807 425 GILR 428 (676)
Q Consensus 425 ~~l~ 428 (676)
.+-.
T Consensus 588 ~l~~ 591 (618)
T KOG0797|consen 588 ILDF 591 (618)
T ss_pred HHHH
Confidence 7643
No 174
>PRK13318 pantothenate kinase; Reviewed
Probab=41.80 E-value=28 Score=35.31 Aligned_cols=19 Identities=32% Similarity=0.718 Sum_probs=17.1
Q ss_pred eEEEEcCCceEEEEEEECC
Q 005807 55 VIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~ 73 (676)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 7899999999999998853
No 175
>PLN03172 chalcone synthase family protein; Provisional
Probab=41.70 E-value=81 Score=34.21 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=45.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCc-CcHHHHHHHHHHhCCCC
Q 005807 349 KFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMT-RVPKVQEIVTEIFGKSP 406 (676)
Q Consensus 349 ~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~i~~~l~~~fg~~~ 406 (676)
..+...+...+-..+.++++|+++++++.+|+.|+++-.+. .+|.+--.|.+.+|.+.
T Consensus 94 r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 94 RQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 33334445556666778999999999999999998776554 69999999999998654
No 176
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=40.45 E-value=3.5e+02 Score=30.91 Aligned_cols=88 Identities=15% Similarity=0.263 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhcCCC--HHHHHHHHHHHHHHHHhhccCChH
Q 005807 554 ESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG----EYREKIP--GEVAKEIEDAVSDLRKAMAGEDID 627 (676)
Q Consensus 554 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~----~~~~~~~--~~~~~~~~~~~~~~~~wl~~~~~~ 627 (676)
++++..+......+...+++.+... ..+......+++.|. .|+..++ ++..+.+....+++.+|....|..
T Consensus 114 e~~i~~i~~~l~~L~~~e~~nr~~i---~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~ 190 (560)
T PF06160_consen 114 EEDIKEILDELDELLESEEKNREEI---EELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYL 190 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4556666666666665544333322 223333334455552 2222222 366677777888888899888855
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005807 628 GIKAKLDAANKAVSKIG 644 (676)
Q Consensus 628 ~~~~~~~~L~~~~~~i~ 644 (676)
+-++.+..++.....+.
T Consensus 191 ~A~eil~~l~~~~~~l~ 207 (560)
T PF06160_consen 191 EAREILEKLKEETDELE 207 (560)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555554444433
No 177
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=39.72 E-value=1.2e+02 Score=23.02 Aligned_cols=42 Identities=12% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 005807 174 MKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDV 216 (676)
Q Consensus 174 l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~ 216 (676)
+.+....++... ....+..|+.++..||..+.+.|+..||..
T Consensus 4 ~~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 4 LKAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred HHHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 334444444433 346789999999999999999999999965
No 178
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=38.70 E-value=79 Score=27.80 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=30.3
Q ss_pred eEEEEEEcC-CccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHH
Q 005807 517 IEVTFDIDA-NGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEA 564 (676)
Q Consensus 517 i~v~f~~d~-~g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~ 564 (676)
-.+.|.+|. -|.+.|++.|..||+... .+.++++-++.+.+
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVIR-------qIPpee~L~l~~r~ 108 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVIR-------QIPPEEALELAARM 108 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcchh-------hCChHHHHHHHHHH
Confidence 368899986 589999999999998653 46667665554443
No 179
>PLN02377 3-ketoacyl-CoA synthase
Probab=38.59 E-value=76 Score=35.53 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=43.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEE-EcCCcCcHHHHHHHHHHhCCC
Q 005807 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLL-VGGMTRVPKVQEIVTEIFGKS 405 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~i~~~l~~~fg~~ 405 (676)
++...++...-+...++++|+++++++.+|+.|++ +.+....|.+-.+|.+.+|.+
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 44444555555667788999999999999999987 445556899999999999965
No 180
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=38.17 E-value=1.2e+02 Score=23.96 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=36.4
Q ss_pred eEEEEEEcCCccEEEEEEecCCCceeeEEecc---CCCCCHHHHHHHHHHHHH
Q 005807 517 IEVTFDIDANGIVTVSAKDKATGKEQQITIRS---SGGLSESEIEKMVKEAEL 566 (676)
Q Consensus 517 i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~---~~~~~~~~i~~~~~~~~~ 566 (676)
....+.++.+|.|+|...|..||... +.++. ..-.|..+|.+++.+.+.
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~-l~vtGI~~~~l~s~rdI~~LI~eLr~ 66 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVE-LTVTGISTSALNSSRDIVRLIAELRA 66 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEE-EEEcCcCHHHcCCHHHHHHHHHHHHH
Confidence 46778899999999999999999762 34443 344677888888777643
No 181
>PLN02902 pantothenate kinase
Probab=38.15 E-value=1.7e+02 Score=34.79 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCCcCc-HHHHHHHHHH---hC---CCCCCCCCcchhHhhHHHHHhhh
Q 005807 377 KDVDEVLLVGGMTRV-PKVQEIVTEI---FG---KSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 377 ~~i~~ViLvGG~s~~-p~i~~~l~~~---fg---~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
.+++.|+++|.+-|- |...+.|... +. .+....-+-...-|.||.+....
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~~ 401 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEK 401 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCCc
Confidence 668999999998653 3344444433 32 34455667788999999976653
No 182
>PLN03168 chalcone synthase; Provisional
Probab=37.63 E-value=95 Score=33.61 Aligned_cols=59 Identities=10% Similarity=0.284 Sum_probs=45.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCC-cCcHHHHHHHHHHhCCCC
Q 005807 348 SKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGM-TRVPKVQEIVTEIFGKSP 406 (676)
Q Consensus 348 ~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~i~~~l~~~fg~~~ 406 (676)
+.++-..+...+-..+..+++|+++++++++|+.|+++-.+ -.+|.+--.|.+.+|.+.
T Consensus 92 ~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 151 (389)
T PLN03168 92 VRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKP 151 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCC
Confidence 33444445556666778899999999999999999877433 358999999999999654
No 183
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=37.53 E-value=19 Score=33.18 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=14.2
Q ss_pred eEEEEcCCceEEEEEEEC
Q 005807 55 VIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~ 72 (676)
|+|||-|+++++.|+.+.
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 689999999999999854
No 184
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=37.20 E-value=3.9e+02 Score=25.97 Aligned_cols=73 Identities=7% Similarity=0.016 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHh
Q 005807 576 TLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMA 648 (676)
Q Consensus 576 ~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~ 648 (676)
.+.+++.+....+...+..-+.....+-.+-+++....+.+.+.-++.+.....++-.+++.+....+.+++.
T Consensus 108 ~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL 180 (205)
T PRK06231 108 RHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELI 180 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444432222222333344444444444444443333333333344444444444444
No 185
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=36.71 E-value=4.2e+02 Score=26.06 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHHHH
Q 005807 551 GLSESEIEKMVKEA 564 (676)
Q Consensus 551 ~~~~~~i~~~~~~~ 564 (676)
.|+.+|++++.++.
T Consensus 39 ~l~nee~~eLk~qn 52 (230)
T PF03904_consen 39 SLENEEIQELKRQN 52 (230)
T ss_pred HHhHHHHHHHHHhh
Confidence 35667777765543
No 186
>PF13941 MutL: MutL protein
Probab=35.97 E-value=38 Score=37.28 Aligned_cols=57 Identities=26% Similarity=0.365 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHH-----HcCCCe------EEeeChhHHHHHhccccCC--CCeEEEEeeCCceeEEEEEE
Q 005807 199 DAQRQATKDAGR-----IAGLDV------QRIINEPTAAALSYGMNNK--EGLIAVFDLGGGTFDVSVLE 255 (676)
Q Consensus 199 ~~qr~~l~~Aa~-----~AGl~~------~~li~Ep~AAal~y~~~~~--~~~vlV~D~GgGT~Dvsv~~ 255 (676)
+..|+++++... .-|++. -.+++=|.|...+..+-.+ .+.+|++|+||-|||+--+.
T Consensus 197 ~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 197 EPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccCcccchhhhc
Confidence 455666655542 235533 2366666666554433333 24899999999999996554
No 187
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=35.96 E-value=91 Score=23.44 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 005807 172 TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDV 216 (676)
Q Consensus 172 ~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~ 216 (676)
+.+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 2 ~~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 2 EDIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred hHHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 34555556665444 45678999 89999999999999999864
No 188
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=35.57 E-value=1.2e+02 Score=31.30 Aligned_cols=45 Identities=11% Similarity=0.283 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCcCCCcEEEEE-cCCcCcHHHHHHHHHHhCCC
Q 005807 361 TKAPCKNCLKDANITIKDVDEVLLV-GGMTRVPKVQEIVTEIFGKS 405 (676)
Q Consensus 361 i~~~i~~~l~~~~~~~~~i~~ViLv-GG~s~~p~i~~~l~~~fg~~ 405 (676)
+...++++|+++++++.+|+.+++. ..+.-.|.+-.+|-+.||..
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 4566788999999999999977554 67889999999999999854
No 189
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=35.56 E-value=1.7e+02 Score=28.11 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCH---HHHHHHHHHHHHHHHhhccCChHHHH
Q 005807 554 ESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPG---EVAKEIEDAVSDLRKAMAGEDIDGIK 630 (676)
Q Consensus 554 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~wl~~~~~~~~~ 630 (676)
++|+..+.+.+.++.+.+..-+.++..-..-++.|.+++..|++.+-.++. .-+++++..-..-..-+.++..-.|-
T Consensus 56 d~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpvsSEelIKyA 135 (272)
T KOG4552|consen 56 DDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPVSSEELIKYA 135 (272)
T ss_pred cHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-------------------------HHHhcCCC--CCCCCC--------CCCCCCCCCcc
Q 005807 631 AKLDAANKAVSKIG-------------------------QHMAGGSS--DNSASG--------GSQGGDQAPEA 669 (676)
Q Consensus 631 ~~~~~L~~~~~~i~-------------------------~~~~~~~~--~~~~~g--------~~~~~~~~~~~ 669 (676)
+++..-..++.|+. ..+.+.+. .++++- |+||.|..++|
T Consensus 136 HrIS~~NaVsAPLTW~~GDprRPyPtd~EmR~GLlGk~~~~in~ps~s~~Ngg~P~~~~~tl~gsA~tg~~sga 209 (272)
T KOG4552|consen 136 HRISKHNAVSAPLTWQMGDPRRPYPTDHEMRAGLLGKQRPLINSPSASSSNGGAPIRTVGTLIGSAPTGDFSGA 209 (272)
T ss_pred HHhhhcccccCccccccCCCCCCCCchhHHhccCccccccccCCCCcCCCCCCCCchhhccccccCCCCCcccc
No 190
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=35.54 E-value=1.1e+02 Score=31.26 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCC-------CCCCCCcchhHhhHHHHHhh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKS-------PSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~-------~~~~~~p~~aVa~GAal~a~ 425 (676)
+++.|+|.|+.+..+.+.+.+++.+... +........+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 3588999888877766666666665321 11223446788999998754
No 191
>PRK13320 pantothenate kinase; Reviewed
Probab=35.01 E-value=1.1e+02 Score=30.79 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.4
Q ss_pred CceEEEEcCCceEEEEEEECC
Q 005807 53 NDVIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~ 73 (676)
++++.||.|+|+++.++++++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECC
Confidence 358999999999999998864
No 192
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=34.98 E-value=5.3e+02 Score=26.62 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHh---hccC---ChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 605 EVAKEIEDAVSDLRKA---MAGE---DIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 605 ~~~~~~~~~~~~~~~w---l~~~---~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
+.|.++...++..... |+.+ -..+|+.-++.|+.+.+.|-+....
T Consensus 183 E~k~~~t~~le~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeRss 233 (426)
T KOG2008|consen 183 ELKAKYTVQLEQQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEERSS 233 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555555544433 3222 2678888999999999999877665
No 193
>PRK08868 flagellar protein FlaG; Provisional
Probab=34.67 E-value=1.1e+02 Score=27.87 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=34.2
Q ss_pred eeEEEEEEcCC-ccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHH
Q 005807 516 QIEVTFDIDAN-GIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAEL 566 (676)
Q Consensus 516 ~i~v~f~~d~~-g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 566 (676)
...+.|.+|.+ |.+-|.+.|..||.... .+.+|++-++.+.+.+
T Consensus 88 n~~L~F~vdeetgr~VVkViD~~T~EVIR-------QIP~Ee~L~la~~l~e 132 (144)
T PRK08868 88 NKGLSFRVDEESGRDVVTIYEASTGDIIR-------QIPDEEMLEVLRRLAE 132 (144)
T ss_pred cCceEEEEecCCCCEEEEEEECCCCceee-------eCCCHHHHHHHHHHHH
Confidence 34789999975 88899999999998653 5777888777766554
No 194
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=34.49 E-value=1.1e+02 Score=31.32 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=33.0
Q ss_pred cEEEEEcCCc-CcHHHHHHHHHHhC----CCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 380 DEVLLVGGMT-RVPKVQEIVTEIFG----KSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 380 ~~ViLvGG~s-~~p~i~~~l~~~fg----~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
=.|++|||.- ....+++-....+. .+-.....|.+.-|.|||++|+.+.+
T Consensus 265 l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 265 LPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred ceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 4799999973 34444444333331 22345678899999999999997543
No 195
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=34.34 E-value=1.2e+02 Score=31.19 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=24.8
Q ss_pred HcCCCeEEeeChhHHHHHhc---cccCCCCeEEEEeeCCc
Q 005807 211 IAGLDVQRIINEPTAAALSY---GMNNKEGLIAVFDLGGG 247 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y---~~~~~~~~vlV~D~GgG 247 (676)
..|++ +.+.|+-.|+|++- +..+..++++.+.+|.|
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG 133 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG 133 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc
Confidence 35776 57999999999873 22223347888888865
No 196
>PRK12408 glucokinase; Provisional
Probab=34.25 E-value=36 Score=36.04 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.0
Q ss_pred CCCCCceEEEEcCCceEEEEEEEC
Q 005807 49 RPAGNDVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 49 ~~~~~~vvGID~GTt~s~va~~~~ 72 (676)
++++..++|||+|.|++++++++.
T Consensus 12 ~~~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 12 VPRPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred CcccccEEEEEcChhhhheeEEec
Confidence 445566899999999999999864
No 197
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=33.99 E-value=1.2e+02 Score=32.91 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCc-CcHHHHHHHHHHhC
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMT-RVPKVQEIVTEIFG 403 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~i~~~l~~~fg 403 (676)
.++-++.++.+.|-....... ..+|.|+++||-+ ..+.|++.|.+.+.
T Consensus 301 A~d~f~yri~k~Iga~~a~L~---g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAALN---GRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 344556666666665555541 4589999999999 99999999998774
No 198
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=33.75 E-value=5.7e+02 Score=26.70 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHh---CCCCCCCC---CcchhHhhH
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIF---GKSPSKGV---NPDEAVALG 419 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~f---g~~~~~~~---~p~~aVa~G 419 (676)
.++.|+|+||.+...++++.|.+.+ |.+++.+. -.|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 3578999999999999999999965 43333222 335666666
No 199
>PRK13320 pantothenate kinase; Reviewed
Probab=33.16 E-value=44 Score=33.60 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=14.6
Q ss_pred HHHHhccccCCCCeEEEEeeCCcee
Q 005807 225 AAALSYGMNNKEGLIAVFDLGGGTF 249 (676)
Q Consensus 225 AAal~y~~~~~~~~vlV~D~GgGT~ 249 (676)
|++++.........++|+|+|--+|
T Consensus 102 ~~~~aa~~~~~~~~~lVID~GTA~T 126 (244)
T PRK13320 102 ALCAGARYLFPGKNVLAIDAGTAIT 126 (244)
T ss_pred HHHHHHHHhcCCCCEEEEEcCCceE
Confidence 4444333222234789999997644
No 200
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=33.14 E-value=31 Score=30.95 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.9
Q ss_pred EEEEcCCceEEEEEEEC
Q 005807 56 IGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 56 vGID~GTt~s~va~~~~ 72 (676)
+|||+|+..+++|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998654
No 201
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.82 E-value=6.4e+02 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 005807 626 IDGIKAKLDAANKAVSKIGQH 646 (676)
Q Consensus 626 ~~~~~~~~~~L~~~~~~i~~~ 646 (676)
-..+...+++|...+++|...
T Consensus 328 Qn~i~~~l~ql~rql~~il~~ 348 (497)
T KOG3838|consen 328 QNAIHKQLAQLERQLDKILGP 348 (497)
T ss_pred hhHHHHHHHHHHHHHHHHhCc
Confidence 345667777888888877744
No 202
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.68 E-value=4.4e+02 Score=28.86 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhHh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---------CCHHHHHHHHHHHHHHHHh
Q 005807 554 ESEIEKMVKEAELHAQR----DQERKTLIDIRNNADTTIYSIEKSLGEYREK---------IPGEVAKEIEDAVSDLRKA 620 (676)
Q Consensus 554 ~~~i~~~~~~~~~~~~~----d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~w 620 (676)
.+++.+++++++++.+. +++.|++..--|.++.+...|+.+..++... ..+++.+.+.+..+.+..-
T Consensus 280 n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 280 NDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35566666666665443 4455555666688888888888777543221 1234555555555555555
Q ss_pred hccCC
Q 005807 621 MAGED 625 (676)
Q Consensus 621 l~~~~ 625 (676)
+...+
T Consensus 360 ~~kq~ 364 (622)
T COG5185 360 LRKQG 364 (622)
T ss_pred HHhcC
Confidence 55544
No 203
>PRK11637 AmiB activator; Provisional
Probab=31.94 E-value=4.6e+02 Score=28.65 Aligned_cols=68 Identities=10% Similarity=0.137 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 577 LIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAG--EDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 577 ~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~--~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
.....++++.-+..+...|... ....+.+...++.++.-+.. .+....+.+++.+++.+......+|.
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~-----~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQA-----SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555432 22223333444444333322 13667778888888888888888886
No 204
>PRK07738 flagellar protein FlaG; Provisional
Probab=31.82 E-value=1.4e+02 Score=26.29 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=33.7
Q ss_pred eEEEEEEcC-CccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHh
Q 005807 517 IEVTFDIDA-NGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELH 567 (676)
Q Consensus 517 i~v~f~~d~-~g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~ 567 (676)
..+.|++|. .|.+-|.+.|..|++... .+.++++-++.+...++
T Consensus 64 ~~L~F~vdeet~~~vVkVvD~~T~EVIR-------QIPpEe~L~l~~~m~e~ 108 (117)
T PRK07738 64 TSLKFELHEKLNEYYVQVVDERTNEVIR-------EIPPKKLLDMYAAMMEF 108 (117)
T ss_pred CceEEEEecCCCcEEEEEEECCCCeeee-------eCCCHHHHHHHHHHHHH
Confidence 478999997 489999999999987653 46677777776665553
No 205
>PRK13326 pantothenate kinase; Reviewed
Probab=31.47 E-value=48 Score=33.73 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.0
Q ss_pred CceEEEEcCCceEEEEEEECCc
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKN 74 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~ 74 (676)
++++.||.|+|+++++++++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 4589999999999999998653
No 206
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.28 E-value=6.3e+02 Score=26.40 Aligned_cols=81 Identities=11% Similarity=0.215 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhccC------C
Q 005807 552 LSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGE------D 625 (676)
Q Consensus 552 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~------~ 625 (676)
.+++++.+++.++.... .+.........+++.-+...+..+++. .+++.++.+.+.+++.-++.. +
T Consensus 201 ~d~~eL~~lk~~l~~~~---~ei~~~~~~l~e~~~~l~~l~~~I~~~-----~~~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 201 CDPTELDRAKEKLKKLL---QEIMIKVKKLEELEEELQELESKIEDL-----TNKKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 55667776664443322 222222222223333333334444332 456667777777777655443 2
Q ss_pred hHHHHHHHHHHHHHH
Q 005807 626 IDGIKAKLDAANKAV 640 (676)
Q Consensus 626 ~~~~~~~~~~L~~~~ 640 (676)
...++.+++.|++..
T Consensus 273 i~~Lk~~~~~Le~l~ 287 (312)
T smart00787 273 IEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666666666543
No 207
>PRK09557 fructokinase; Reviewed
Probab=31.06 E-value=1.4e+02 Score=30.74 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=23.9
Q ss_pred cCCCeEEeeChhHHHHHhccc---cCCCCeEEEEeeCCc
Q 005807 212 AGLDVQRIINEPTAAALSYGM---NNKEGLIAVFDLGGG 247 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~~---~~~~~~vlV~D~GgG 247 (676)
.|++ +.+.|+..|+|++-.. .+..++++.+.+|.|
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG 133 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG 133 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc
Confidence 4776 5799999999987432 233347777777754
No 208
>PLN02854 3-ketoacyl-CoA synthase
Probab=30.94 E-value=1.1e+02 Score=34.45 Aligned_cols=45 Identities=4% Similarity=0.200 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCcCCCcEEEE-EcCCcCcHHHHHHHHHHhCCC
Q 005807 361 TKAPCKNCLKDANITIKDVDEVLL-VGGMTRVPKVQEIVTEIFGKS 405 (676)
Q Consensus 361 i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~i~~~l~~~fg~~ 405 (676)
+...++++|+++++++++|+.||+ +.+....|.+-.+|.+.+|.+
T Consensus 192 ~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 192 MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 445567889999999999999987 345556899999999999864
No 209
>PRK00292 glk glucokinase; Provisional
Probab=30.85 E-value=47 Score=34.73 Aligned_cols=39 Identities=36% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHcCCCeEEeeChhHHHHHhccc-----------cCC--CCeEEEEeeCCce
Q 005807 210 RIAGLDVQRIINEPTAAALSYGM-----------NNK--EGLIAVFDLGGGT 248 (676)
Q Consensus 210 ~~AGl~~~~li~Ep~AAal~y~~-----------~~~--~~~vlV~D~GgGT 248 (676)
+..|++.+.+.|+-.|+|++-.. .+. .++++++-+|.|-
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 34588778999999999997422 221 1367888887663
No 210
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=30.84 E-value=4.3e+02 Score=24.32 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 005807 631 AKLDAANKAVSKIG 644 (676)
Q Consensus 631 ~~~~~L~~~~~~i~ 644 (676)
...++|+.....+.
T Consensus 133 ~a~~~l~~~v~~lA 146 (156)
T CHL00118 133 KALKSLEEQVDTLS 146 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 211
>PRK13326 pantothenate kinase; Reviewed
Probab=30.75 E-value=1.3e+02 Score=30.54 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=20.5
Q ss_pred cEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhh
Q 005807 380 DEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 380 ~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~ 425 (676)
-.|+++||.+.+ +... +.. ....+|+ -+-.|..+++.
T Consensus 218 ~~vv~TGG~a~~--l~~~----~~~--~~~~~~~-LvL~GL~~i~~ 254 (262)
T PRK13326 218 FNLIITGGNSNL--ILPL----ISV--DFIFNLY-LTLEGIRILGN 254 (262)
T ss_pred CEEEEECCCHHH--HHhh----CCC--CcEECcc-cHHHHHHHHHh
Confidence 379999997642 3332 221 2233443 36677776654
No 212
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.66 E-value=4.3e+02 Score=30.04 Aligned_cols=60 Identities=7% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHH
Q 005807 572 QERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGED--IDGIKAKLDAAN 637 (676)
Q Consensus 572 ~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~--~~~~~~~~~~L~ 637 (676)
+.+++..+++++|+++...++..... .-+.+.....+..++.-|.+.. .++++.++.+|+
T Consensus 447 e~k~eie~L~~~l~~~~r~~~~~~~~------~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 447 ELKREIEKLESELERFRREVRDKVRK------DREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666555544321 2233344445555555454433 666777777666
No 213
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=30.64 E-value=3.2e+02 Score=28.63 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=51.1
Q ss_pred HHcCCCeEEeeChhHHHHHhcccc-------------CCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecC-CCCcc-h
Q 005807 210 RIAGLDVQRIINEPTAAALSYGMN-------------NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNG-DTFLG-G 274 (676)
Q Consensus 210 ~~AGl~~~~li~Ep~AAal~y~~~-------------~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g-~~~lG-G 274 (676)
+..|++.+.+||+=+|.|++.... ...+..+|+=.|-| +-++.+--.++.+.++.+.+ ...+. -
T Consensus 88 ~~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~~~~v~~sEgGH~~fap~ 166 (316)
T PF02685_consen 88 QRLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGDGYYVLPSEGGHVDFAPR 166 (316)
T ss_dssp CCCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETTEEEEEEE-GGGSB---S
T ss_pred HHhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCCceEeCCCccccccCCCC
Confidence 346889999999999999865221 11237888888866 56665555666555776654 33333 3
Q ss_pred HHHHHHHHHHHHHHhh
Q 005807 275 EDFDNALLEFLVSEFK 290 (676)
Q Consensus 275 ~~~D~~l~~~l~~~~~ 290 (676)
.+.+..|.+++.+++.
T Consensus 167 ~~~e~~l~~~l~~~~~ 182 (316)
T PF02685_consen 167 TDEEAELLRFLRRRYG 182 (316)
T ss_dssp SHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHhcC
Confidence 5677889999988873
No 214
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=29.71 E-value=1.1e+02 Score=23.36 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=26.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Q 005807 188 EAVITVPAYFNDAQRQATKDAGRIAGLDV 216 (676)
Q Consensus 188 ~~VITVPa~~~~~qr~~l~~Aa~~AGl~~ 216 (676)
.-.++.|+.+++.+|+.+...|...||..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 56778899999999999999999999965
No 215
>PRK08452 flagellar protein FlaG; Provisional
Probab=29.40 E-value=1.5e+02 Score=26.37 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=32.4
Q ss_pred eEEEEEEcCC-ccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHH
Q 005807 517 IEVTFDIDAN-GIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAEL 566 (676)
Q Consensus 517 i~v~f~~d~~-g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 566 (676)
..+.|.+|.. +.+.|.+.|..|++... .+.+|++-++.+...+
T Consensus 71 ~~L~F~~de~~~~~vVkVvD~~T~eVIR-------qIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 71 TNIRFGYNDKIKGLVVSVKEANGGKVIR-------EIPSKEAIELMEYMRD 114 (124)
T ss_pred CceEEEEcCCCCcEEEEEEECCCCceee-------eCCCHHHHHHHHHHHH
Confidence 4788999764 78999999999998653 4667777777665544
No 216
>PRK13331 pantothenate kinase; Reviewed
Probab=29.35 E-value=68 Score=32.36 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.2
Q ss_pred CCceEEEEcCCceEEEEEEECC
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~ 73 (676)
.+.++.||.|+|++++++++++
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECC
Confidence 3568999999999999999864
No 217
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=29.11 E-value=2.8e+02 Score=23.24 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 005807 549 SGGLSESEIEKMVKEAEL-HAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDL 617 (676)
Q Consensus 549 ~~~~~~~~i~~~~~~~~~-~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 617 (676)
++..+++|++.+..-... +...+.+..+..+.-+....-..++......+....++++|..+.+.+-.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~v 82 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEV 82 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 466888888887776555 444444444443333333222222333333333334677776666665444
No 218
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.98 E-value=3.4e+02 Score=27.55 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhccCC
Q 005807 608 KEIEDAVSDLRKAMAGED 625 (676)
Q Consensus 608 ~~~~~~~~~~~~wl~~~~ 625 (676)
+.|++.++.+..-|-..|
T Consensus 127 kQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 127 KQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHhhhchhh
Confidence 344555555555554443
No 219
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=28.80 E-value=4.4e+02 Score=24.59 Aligned_cols=59 Identities=24% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCHHHHHHHHHHHHHHH
Q 005807 551 GLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYR--EKIPGEVAKEIEDAVSDLR 618 (676)
Q Consensus 551 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~ 618 (676)
.+|.|--+++.+.+.++.++-+ ...+|. -.+..+.+.... ..+++++...+.+.++.+.
T Consensus 86 ~~T~E~R~~l~k~~k~~~E~~k-----~~iR~i----R~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~ 146 (165)
T PF01765_consen 86 PPTEERRKELVKQAKKIAEEAK-----VSIRNI----RRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLT 146 (165)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH-----HHHHHH----HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-----HHHHHH----HHHHHHHHHhhhccCCCCchhhHHHHHHHHHHH
Confidence 5788888888887776554422 222222 222223332222 2378888888887777764
No 220
>PLN02192 3-ketoacyl-CoA synthase
Probab=28.49 E-value=1.5e+02 Score=33.31 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=40.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEc-CCcCcHHHHHHHHHHhCCC
Q 005807 351 ETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVG-GMTRVPKVQEIVTEIFGKS 405 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvG-G~s~~p~i~~~l~~~fg~~ 405 (676)
++..++...-+...++++|+++++++.+|+.|++.. +....|.+-.+|.+.+|.+
T Consensus 170 ~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 170 AEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 333344444456677889999999999999887653 2235899999999999865
No 221
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=27.63 E-value=54 Score=35.94 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.4
Q ss_pred CCceEEEEcCCceEEEEEEEC
Q 005807 52 GNDVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~ 72 (676)
++++++||-|||+|.+.+++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~ 24 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE 24 (499)
T ss_pred ccEEEEEecCCcceeEEEECC
Confidence 578999999999999988754
No 222
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=27.29 E-value=1.6e+02 Score=31.87 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=35.0
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCc-CcHHHHHHHHHHhC
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMT-RVPKVQEIVTEIFG 403 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~i~~~l~~~fg 403 (676)
.++-++.++.+.|-......+ ..+|.|+++||-+ .++.|++.+.+.++
T Consensus 305 A~~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 305 AIKMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 344455566666655555433 2489999999999 89999999998774
No 223
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.19 E-value=8.7e+02 Score=27.77 Aligned_cols=85 Identities=14% Similarity=0.232 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcCCC--HHHHHHHHHHHHHHHHhhccCChH
Q 005807 554 ESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGE----YREKIP--GEVAKEIEDAVSDLRKAMAGEDID 627 (676)
Q Consensus 554 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~----~~~~~~--~~~~~~~~~~~~~~~~wl~~~~~~ 627 (676)
++++..+......+...+++-+.. ...+...-..+++.|-. |+..++ +...+.+......+.+|...+|..
T Consensus 118 e~~~~~i~~~l~~l~~~e~~nr~~---v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~ 194 (569)
T PRK04778 118 EEDIEQILEELQELLESEEKNREE---VEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYV 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 456666666666666554443332 22333333455555532 222232 466677888888888999888854
Q ss_pred HHHHHHHHHHHHHH
Q 005807 628 GIKAKLDAANKAVS 641 (676)
Q Consensus 628 ~~~~~~~~L~~~~~ 641 (676)
+-++.+..|+....
T Consensus 195 ~A~e~l~~l~~~~~ 208 (569)
T PRK04778 195 EAREILDQLEEELA 208 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 224
>PRK13324 pantothenate kinase; Reviewed
Probab=27.03 E-value=1.8e+02 Score=29.42 Aligned_cols=19 Identities=21% Similarity=0.623 Sum_probs=17.1
Q ss_pred eEEEEcCCceEEEEEEECC
Q 005807 55 VIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~ 73 (676)
++.||.|+|+++.++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 7899999999999998854
No 225
>PRK13322 pantothenate kinase; Reviewed
Probab=26.69 E-value=1.6e+02 Score=29.54 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHH--HHHHHHHHHHHhhhhccCCCccCHH
Q 005807 225 AAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDF--DNALLEFLVSEFKRTERIDLSQDKL 302 (676)
Q Consensus 225 AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~--D~~l~~~l~~~~~~~~~~~~~~~~~ 302 (676)
|++++.....+.. ++|+|+|--+| +.++...+ .++||.=. =....+-|.+.-.+-...+.
T Consensus 105 ~~~~aA~~~~~~~-~lViD~GTA~T-----------iD~v~~~g-~~~GG~I~PG~~l~~~aL~~~Ta~Lp~v~~----- 166 (246)
T PRK13322 105 LALLGAFHLAKNA-CLVIDCGTAVT-----------IDLVDADG-QHLGGYICPGLYLMRDALRTHTRRIRYDDG----- 166 (246)
T ss_pred HHHHHHHHHcCCC-EEEEEcCCeeE-----------EEEEcCCC-cEeeeEEccCHHHHHHHHHhhhhcCCCCcc-----
Q ss_pred HHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEE
Q 005807 303 ALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEV 382 (676)
Q Consensus 303 ~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~V 382 (676)
......+-++.-+.+..-++......|+..+++..-....--.|
T Consensus 167 ------------------------------------~~~~~~~g~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~~v 210 (246)
T PRK13322 167 ------------------------------------TADSLSPGRNTVDAVERGCLLMLRGFIESQLEQARELWGPDFEI 210 (246)
T ss_pred ------------------------------------cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Q ss_pred EEEcCCcCc
Q 005807 383 LLVGGMTRV 391 (676)
Q Consensus 383 iLvGG~s~~ 391 (676)
+++||.+..
T Consensus 211 ilTGG~a~~ 219 (246)
T PRK13322 211 FLTGGDAPL 219 (246)
T ss_pred EEECCCHHH
No 226
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=26.63 E-value=5.3e+02 Score=24.65 Aligned_cols=63 Identities=22% Similarity=0.292 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHH
Q 005807 550 GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRK 619 (676)
Q Consensus 550 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 619 (676)
..|++|--.++++.+..+.++-+ ...+|--......+++...+ ..+++++....++.++.+.+
T Consensus 105 P~lTeErRkelvK~~k~~~Eeak-----vaiRniRrda~d~iKK~~K~--~~isEDe~k~~e~~iQKlTd 167 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAK-----VAVRNIRRDANDKIKKLEKD--KEISEDEVKKAEEEIQKLTD 167 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHHHH
Confidence 36888888888888888776542 44455444444333333322 34888888888888887753
No 227
>PRK14878 UGMP family protein; Provisional
Probab=26.53 E-value=1.6e+02 Score=30.84 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=49.2
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHH------HHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQ------EIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~------~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
..+...+.+...++++|+++++++.+|+.|.++-|-...+.++ +.|...++.+ ...++-.++=+..|.
T Consensus 40 ~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p-~~~v~h~~~Ha~sa~ 113 (323)
T PRK14878 40 AAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKP-LVPVNHCIAHIEIGR 113 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHhCCC-ccccchHHHHHHhhh
Confidence 4456677888899999999999999999999998777777665 3344455653 455666666555443
No 228
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=41 Score=37.26 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=25.5
Q ss_pred CChHHHHHH--HHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCCCCCCcccceecCC
Q 005807 624 EDIDGIKAK--LDAANKAVSKIGQHMAGGSSDNSASGG--SQGGDQAPEAEYEEVKK 676 (676)
Q Consensus 624 ~~~~~~~~~--~~~L~~~~~~i~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~ 676 (676)
+|.++..-+ ....-++...+.+.+.+..+.+-.+++ +.|++...++.++||||
T Consensus 352 ~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkd 408 (640)
T KOG0102|consen 352 SDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKD 408 (640)
T ss_pred hhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccc
Confidence 345555544 555556666666665554332222111 11222334677777775
No 229
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=26.29 E-value=1.6e+02 Score=30.85 Aligned_cols=67 Identities=24% Similarity=0.261 Sum_probs=47.9
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHH------HHHHHHhCCCCCCCCCcchhHhhHH
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQ------EIVTEIFGKSPSKGVNPDEAVALGA 420 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~------~~l~~~fg~~~~~~~~p~~aVa~GA 420 (676)
..+...+.+...++++|+++++++.+|+.|.++-|-...+.++ +.|...++. +...++-.++=+..|
T Consensus 41 ~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~vg~~~ak~la~~~~~-p~~~v~h~~aHa~sa 113 (322)
T TIGR03722 41 AAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLRVGATAARALALKLNK-PLVGVNHCVAHIEIG 113 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHHHHHHHHHHHHHHhCC-CeechhhHHHHHHhh
Confidence 4456777888889999999999999999999998877777665 334444555 344555555555433
No 230
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=26.25 E-value=3.8e+02 Score=30.86 Aligned_cols=19 Identities=5% Similarity=0.023 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005807 578 IDIRNNADTTIYSIEKSLG 596 (676)
Q Consensus 578 ~~~~n~le~~i~~~~~~l~ 596 (676)
.+.++.++..+.++++.|+
T Consensus 534 ~~~~~~i~~~~~~~~~~l~ 552 (595)
T PRK01433 534 ESEISIINSLLDNIKEAVH 552 (595)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456677777877777775
No 231
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=25.50 E-value=5.8e+02 Score=24.15 Aligned_cols=19 Identities=5% Similarity=0.267 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 005807 631 AKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 631 ~~~~~L~~~~~~i~~~~~~ 649 (676)
...++|+.....+...+..
T Consensus 142 ~a~~~l~~~a~~lA~~i~~ 160 (181)
T PRK13454 142 GALESVEEVAKDTAEALVA 160 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666665555443
No 232
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=24.74 E-value=1.4e+02 Score=30.02 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
+++.|+| |+|..|++.+.+++.|+..+ .-+||.+++|.=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 4566554 99999999999999998643 56899888887654
No 233
>PLN03171 chalcone synthase-like protein; Provisional
Probab=24.73 E-value=3.3e+02 Score=29.54 Aligned_cols=58 Identities=12% Similarity=0.288 Sum_probs=43.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCC-cCcHHHHHHHHHHhCCCC
Q 005807 349 KFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGM-TRVPKVQEIVTEIFGKSP 406 (676)
Q Consensus 349 ~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~i~~~l~~~fg~~~ 406 (676)
.++-..+...+-..+..+++|+++++++++|+.|+++-.+ -..|..--.|.+.+|.+.
T Consensus 100 r~~~~~~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LGl~~ 158 (399)
T PLN03171 100 RLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLGLRP 158 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhCCCc
Confidence 3333445566667788999999999999999999983222 237999999999998653
No 234
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=24.60 E-value=3.8e+02 Score=22.99 Aligned_cols=69 Identities=16% Similarity=0.285 Sum_probs=39.5
Q ss_pred CCCCCC-ccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcC--CccEEEEE
Q 005807 460 NTTIPT-KKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDA--NGIVTVSA 533 (676)
Q Consensus 460 ~~~iP~-~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~--~g~l~v~~ 533 (676)
++.=|. ..+..|....+....+.|.||.-+.. .+..||++.+. +.....| ..+...|.+.. .|.|+++.
T Consensus 44 ~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g-~~~~~~~~L~~~~~g~l~~~~ 115 (119)
T cd04036 44 NSINPVWNETFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLG-EKVRVTFSLNPQGKEELEVEF 115 (119)
T ss_pred CCCCCccceEEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCC-CcEEEEEECCCCCCceEEEEE
Confidence 344454 22334443333344688888875442 56789998875 3333334 34677777765 37776654
No 235
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=24.54 E-value=5.1e+02 Score=23.12 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005807 578 IDIRNNADTTIYSIEKSL 595 (676)
Q Consensus 578 ~~~~n~le~~i~~~~~~l 595 (676)
.+++.+...++...+...
T Consensus 67 ~~a~~ea~~i~~~a~~~a 84 (140)
T PRK07353 67 ASARKQAQAVIAEAEAEA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 236
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=24.48 E-value=87 Score=28.58 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.6
Q ss_pred CceEEEEcCCceEEEEEEEC
Q 005807 53 NDVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~ 72 (676)
+.|++||.|+-|.+.++.+.
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 35899999999999999875
No 237
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.84 E-value=6.4e+02 Score=26.45 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhccC-----
Q 005807 551 GLSESEIEKMVKEAELHAQRDQ-ERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGE----- 624 (676)
Q Consensus 551 ~~~~~~i~~~~~~~~~~~~~d~-~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~----- 624 (676)
..+.++++.+..++.....+-. .++++.+++.+++.+ +..+++. .+++.++...+.+++.-.+..
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l----~~~i~~~-----~~~k~~l~~eI~e~~~~~~~~r~~t~ 275 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEEL----EEKIEEL-----EEQKQELLAEIAEAEKIREECRGWTR 275 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3567788888777766554432 222223333332222 2222221 334455555555555444322
Q ss_pred -ChHHHHHHHHHHHHH
Q 005807 625 -DIDGIKAKLDAANKA 639 (676)
Q Consensus 625 -~~~~~~~~~~~L~~~ 639 (676)
+...++.+++.|+..
T Consensus 276 ~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 255556666666554
No 238
>PRK09698 D-allose kinase; Provisional
Probab=23.78 E-value=2e+02 Score=29.57 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCcCc-----HHHHHHHHHHhCC-------CCCCCCCcchhHhhHHHHHhh
Q 005807 378 DVDEVLLVGGMTRV-----PKVQEIVTEIFGK-------SPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 378 ~i~~ViLvGG~s~~-----p~i~~~l~~~fg~-------~~~~~~~p~~aVa~GAal~a~ 425 (676)
+++.|+|-||.+.. +.+++.+++..-. ++......+.+.+.|||..+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 45888888887764 3355555554321 122334456788999998764
No 239
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=23.72 E-value=5.9e+02 Score=26.95 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhccCChHHHHH
Q 005807 555 SEIEKMVKEAELHAQRDQERKTLIDIRNNA---DTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKA 631 (676)
Q Consensus 555 ~~i~~~~~~~~~~~~~d~~~~~~~~~~n~l---e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~ 631 (676)
++++.+.+++.+.-+.-....++.+.|+.. ...+..+-+.|. .++.++|.++-+.++++.+-++. .+.+
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~l~~~r~~~lgkkg~l~~~~~~l~----~l~~eer~~~G~~~n~~k~~~~~----~~~~ 74 (339)
T PRK00488 3 EDLEELVEEALAAIAAASDLEALEALRVKYLGKKGELTELLKGLG----KLPPEERKEAGALINELKQAIEA----ALEE 74 (339)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCchHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 455666555444333322344455555543 233444333333 47899999999999999876654 3444
Q ss_pred HHHHHHH
Q 005807 632 KLDAANK 638 (676)
Q Consensus 632 ~~~~L~~ 638 (676)
+.++|+.
T Consensus 75 ~~~~l~~ 81 (339)
T PRK00488 75 RKEELEA 81 (339)
T ss_pred HHHHHHH
Confidence 4444443
No 240
>PRK14157 heat shock protein GrpE; Provisional
Probab=22.91 E-value=7e+02 Score=24.74 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhcc
Q 005807 583 NADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAG 623 (676)
Q Consensus 583 ~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 623 (676)
++|.|-..+++..++...+-...-...|...++.++..+..
T Consensus 106 EfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~ 146 (227)
T PRK14157 106 EFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREH 146 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhc
Confidence 34444444444443333333333444555566666666643
No 241
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=22.28 E-value=44 Score=36.57 Aligned_cols=57 Identities=28% Similarity=0.360 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH-----HHcCCCeE------EeeChhHHHHHhccccC-----CC--CeEEEEeeCCceeEEEEEE
Q 005807 199 DAQRQATKDAG-----RIAGLDVQ------RIINEPTAAALSYGMNN-----KE--GLIAVFDLGGGTFDVSVLE 255 (676)
Q Consensus 199 ~~qr~~l~~Aa-----~~AGl~~~------~li~Ep~AAal~y~~~~-----~~--~~vlV~D~GgGT~Dvsv~~ 255 (676)
...|+++++.. +.=|++.+ .+++=|.|...+...-. .. +.++++|+||-|||+--+.
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 45677776663 22255332 35555665544332211 11 2599999999999986543
No 242
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.15 E-value=6.5e+02 Score=30.05 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=11.6
Q ss_pred cEEEEEc--CCcCcHHHHHHH
Q 005807 380 DEVLLVG--GMTRVPKVQEIV 398 (676)
Q Consensus 380 ~~ViLvG--G~s~~p~i~~~l 398 (676)
+.++++| |++.+-+++...
T Consensus 323 ~~liItGpNg~GKSTlLK~i~ 343 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLG 343 (771)
T ss_pred eEEEEECCCCCCchHHHHHHH
Confidence 4667776 556666665553
No 243
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=22.10 E-value=1e+02 Score=26.86 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCc--HHHHHHHHHHhCC
Q 005807 358 IERTKAPCKNCLKDANITIKDVDEVLLVGGMTRV--PKVQEIVTEIFGK 404 (676)
Q Consensus 358 v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~--p~i~~~l~~~fg~ 404 (676)
-....+.|+++|+++++++.+|+.|..-|-++.. +.=.+.|++.|+.
T Consensus 24 ~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 24 GAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 3455677999999999999999999998877664 3334567788864
No 244
>COG3679 Regulatory protein involved in competence development and sporulation [Replication, recombination and repair; Signal transduction mechanisms]
Probab=21.81 E-value=5.6e+02 Score=22.58 Aligned_cols=91 Identities=7% Similarity=0.113 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhHhHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhccCC-hHHHH
Q 005807 555 SEIEKMVKEAELHAQRDQE---RKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGED-IDGIK 630 (676)
Q Consensus 555 ~~i~~~~~~~~~~~~~d~~---~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~-~~~~~ 630 (676)
.++.++++..++|..--.. ..+-.+++..++.|. .++..+...+.+--..+.+.+. .+.++..-++.++ ...|+
T Consensus 10 ~eL~~~i~~seey~~~~~~~~~v~~d~eA~~lf~~F~-~~q~~~q~~q~~G~~~d~~~~~-~~q~~~~~i~~~e~v~~f~ 87 (118)
T COG3679 10 QELAEAIRDSEEYQALKEAKRAVEADEEAKKLFEEFR-QLQEQFQEKQRFGYEPDYEEVT-KAQELKQEIQLNEKVSAFM 87 (118)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHcCCCCcHHHHH-HHHHHHHHHhhcHHHHHHH
Confidence 3566777766666543333 333345555666664 3344443222111112233444 6666666666665 77777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005807 631 AKLDAANKAVSKIGQHM 647 (676)
Q Consensus 631 ~~~~~L~~~~~~i~~~~ 647 (676)
++-+.|...+..+...+
T Consensus 88 eaE~~L~~~l~el~~iI 104 (118)
T COG3679 88 EAEQALSSLLDELNKII 104 (118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776666655443
No 245
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.76 E-value=7.1e+02 Score=29.01 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 609 EIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 609 ~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
...+.++.+.++|..-.....+.+...|++.+..++.+++.
T Consensus 480 ~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~ 520 (650)
T TIGR03185 480 RAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMR 520 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444556666666443455556678888888888888764
No 246
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=21.74 E-value=4.3e+02 Score=27.27 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005807 577 LIDIRNNADTTIYSIEKSL 595 (676)
Q Consensus 577 ~~~~~n~le~~i~~~~~~l 595 (676)
..++..++....+.+++.|
T Consensus 219 ~~e~~~~mk~~A~~~~~al 237 (333)
T COG2605 219 TLEALHEMKALAYEMKDAL 237 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777776
No 247
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=21.71 E-value=2.4e+02 Score=29.34 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHH------HHHHhCCCCCCCCCcchhHhhHHH
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEI------VTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~------l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
.......+.+...|+++|+++++++.+|+.|.++-|-...+.++-- |...+++ +...++-.++-+.-|.
T Consensus 43 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~~~-p~~~v~hl~~ha~~a~ 117 (305)
T TIGR00329 43 EASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDK-PLIGVNHLLGHIYAPR 117 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHhCC-CEeecccHHHHHHHhh
Confidence 3456677888889999999999999999999999999988888744 3334455 3455666666665443
No 248
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.69 E-value=4.7e+02 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=25.7
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHH
Q 005807 614 VSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM 647 (676)
Q Consensus 614 ~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~ 647 (676)
+.+++.|+..-|-+++|-.++.|.+-...-...+
T Consensus 150 I~DLE~wl~ktdNeDIK~VyeNLm~GS~NHlrAF 183 (189)
T COG4902 150 IRDLEAWLAKTDNEDIKIVYENLMRGSNNHLRAF 183 (189)
T ss_pred HHHHHHHHhhCCcchhHHHHHHHhhcchHHHHHH
Confidence 5678899988888889988888887665555443
No 249
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=21.67 E-value=71 Score=38.14 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.8
Q ss_pred ceEEEEcCCceEEEEEEECC
Q 005807 54 DVIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~ 73 (676)
+++|+|+||++++.|+++.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 68999999999999998754
No 250
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=21.62 E-value=2.8e+02 Score=30.66 Aligned_cols=17 Identities=18% Similarity=-0.001 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHHhh
Q 005807 552 LSESEIEKMVKEAELHA 568 (676)
Q Consensus 552 ~~~~~i~~~~~~~~~~~ 568 (676)
-|...+.+..+..+++-
T Consensus 283 sT~~lV~~V~~~~~~~p 299 (454)
T TIGR01219 283 STPSMVGKVKKWQMSDP 299 (454)
T ss_pred CcHHHHHHHHHHHHHCH
Confidence 44555555544444443
No 251
>PRK13324 pantothenate kinase; Reviewed
Probab=21.51 E-value=90 Score=31.64 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=9.9
Q ss_pred CeEEEEeeCCcee
Q 005807 237 GLIAVFDLGGGTF 249 (676)
Q Consensus 237 ~~vlV~D~GgGT~ 249 (676)
..++|+|+|--||
T Consensus 124 ~~~iViD~GTA~T 136 (258)
T PRK13324 124 KDLLIIDLGTATT 136 (258)
T ss_pred CCEEEEEcCCceE
Confidence 3689999997643
No 252
>PRK14143 heat shock protein GrpE; Provisional
Probab=21.50 E-value=8.2e+02 Score=24.44 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHH
Q 005807 582 NNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGE-----DIDGIKAKLDAANKAVSKIGQH 646 (676)
Q Consensus 582 n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~-----~~~~~~~~~~~L~~~~~~i~~~ 646 (676)
-++|.|...+++..++...+....-...|...++.++..+..- +...+.+-++-+.+.+..++.+
T Consensus 95 AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~~L~k 164 (238)
T PRK14143 95 ADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLKR 164 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444444444334444455556666777777766431 1334454455555555555544
No 253
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=21.45 E-value=2.1e+02 Score=28.14 Aligned_cols=41 Identities=29% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccc
Q 005807 186 VSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGM 232 (676)
Q Consensus 186 ~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~ 232 (676)
+..++|+ .|+|.--.++|+ .++.+++.+..-...+|+.++.
T Consensus 70 vdaiiIa---Cf~DPgl~~~Re---~~~~PviGi~eAsv~~A~~vgr 110 (230)
T COG4126 70 VDAIIIA---CFSDPGLAAARE---RAAIPVIGICEASVLAALFVGR 110 (230)
T ss_pred CcEEEEE---ecCChHHHHHHH---HhCCCceehhHHHHHHHHHhcc
Confidence 5566665 477766555554 5788999999988888887763
No 254
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=21.37 E-value=96 Score=31.26 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=16.8
Q ss_pred eEEEEcCCceEEEEEEECC
Q 005807 55 VIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~ 73 (676)
.+.||.|+|++..|+++++
T Consensus 2 ~L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGG 20 (251)
T ss_pred eEEEEeCCCeEEEEEecCC
Confidence 6899999999999998843
No 255
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=21.31 E-value=1.3e+02 Score=26.90 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=17.7
Q ss_pred eEEEEcCCceEEEEEEECCc
Q 005807 55 VIGVDLGTTNSCVAVMEGKN 74 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~ 74 (676)
+||||+|-....+++...++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 69999999999999987766
No 256
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=6.9e+02 Score=29.31 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHh
Q 005807 605 EVAKEIEDAVSDLRKAMAGED---IDGIKAKLDAANKAVSKIGQHMA 648 (676)
Q Consensus 605 ~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~L~~~~~~i~~~~~ 648 (676)
++.+.++..+.++.+-++... .+.|+..++.|+..--++.+.++
T Consensus 563 ~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~ 609 (1118)
T KOG1029|consen 563 NEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIG 609 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455556666665555432 55666566666655555555555
No 257
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.13 E-value=3.3e+02 Score=31.46 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhccCC--------------hHHHHHHHHHHHHHHHHHHH
Q 005807 606 VAKEIEDAVSDLRKAMAGED--------------IDGIKAKLDAANKAVSKIGQ 645 (676)
Q Consensus 606 ~~~~~~~~~~~~~~wl~~~~--------------~~~~~~~~~~L~~~~~~i~~ 645 (676)
+.++....+.+.+.|++... .++.+.+.++|.+.|.++..
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~ 724 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIIS 724 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccccccc
Confidence 66778888899999987741 37788888888888888764
No 258
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=20.79 E-value=1.5e+02 Score=27.71 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.3
Q ss_pred CceEEEEcCCce-EEEEEEECCceEEEeCCCCC
Q 005807 53 NDVIGVDLGTTN-SCVAVMEGKNPKVIENSEGT 84 (676)
Q Consensus 53 ~~vvGID~GTt~-s~va~~~~~~~~vi~~~~g~ 84 (676)
+++.|||+|--. +++|++.++..+++..+...
T Consensus 1 mmy~GIDla~k~~tavavl~~~~~~~i~~~s~~ 33 (178)
T COG2410 1 MMYAGIDLAVKRSTAVAVLIEGRIEIISAWSSR 33 (178)
T ss_pred CcccccccccCCCceEEEEECCEEEEEEccccc
Confidence 358899998754 48888999999999876653
No 259
>PLN00415 3-ketoacyl-CoA synthase
Probab=20.73 E-value=2.3e+02 Score=31.42 Aligned_cols=45 Identities=9% Similarity=0.201 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCcCCCcEEEEEcCC-cCcHHHHHHHHHHhCCC
Q 005807 361 TKAPCKNCLKDANITIKDVDEVLLVGGM-TRVPKVQEIVTEIFGKS 405 (676)
Q Consensus 361 i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~i~~~l~~~fg~~ 405 (676)
+...++++|+++++++.+|+.|++.+.. ...|.+-..|.+.+|.+
T Consensus 138 i~~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LGLr 183 (466)
T PLN00415 138 IFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLK 183 (466)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhCCC
Confidence 3446678889999999999998865332 24899999999999865
No 260
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=20.71 E-value=62 Score=30.00 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=16.0
Q ss_pred eEEEEcCCceEEEEEEEC
Q 005807 55 VIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~ 72 (676)
|+|||=|++.++.++.+.
T Consensus 1 ILGIDPGl~~tG~gvi~~ 18 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQ 18 (156)
T ss_pred CEeECcccccccEEEEEe
Confidence 689999999999999763
No 261
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.63 E-value=1.6e+02 Score=31.54 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=37.0
Q ss_pred HhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC
Q 005807 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK 404 (676)
Q Consensus 354 ~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~ 404 (676)
++..++.+...|+++|+++++++.+|+.+++-+++.++- ...+++.||.
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~--d~~~~~llg~ 314 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN--QLIGKKVLGR 314 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH--HHHHHHhccC
Confidence 445567777889999999999999999999999987643 2234444653
No 262
>PHA02557 22 prohead core protein; Provisional
Probab=20.58 E-value=9e+02 Score=24.51 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhcCCCHHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Q 005807 557 IEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSL--GEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLD 634 (676)
Q Consensus 557 i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~ 634 (676)
++.|..++.++. .+..++.+..+.++.+|..+.+.- .+....+++.+++++...+.-++= .+.|..|+.
T Consensus 143 V~em~~~L~E~e---~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egvef------~e~F~~kl~ 213 (271)
T PHA02557 143 VAEMEEELDEME---EELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLEF------SETFSKKLT 213 (271)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccch------hhHHHHHHH
Confidence 444544444433 344455666677777776554433 455567888888888877766542 466777777
Q ss_pred HHHHHHHH
Q 005807 635 AANKAVSK 642 (676)
Q Consensus 635 ~L~~~~~~ 642 (676)
.+..-+.+
T Consensus 214 ~i~E~v~~ 221 (271)
T PHA02557 214 AIVEMVFK 221 (271)
T ss_pred HHHHHHHh
Confidence 76665543
No 263
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.50 E-value=7.3e+02 Score=29.70 Aligned_cols=17 Identities=6% Similarity=0.245 Sum_probs=9.4
Q ss_pred EEEEEc--CCcCcHHHHHH
Q 005807 381 EVLLVG--GMTRVPKVQEI 397 (676)
Q Consensus 381 ~ViLvG--G~s~~p~i~~~ 397 (676)
.++++| +++.+-+++..
T Consensus 329 ~~iITGpN~gGKTt~lkti 347 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTL 347 (782)
T ss_pred EEEEECCCCCCcHHHHHHH
Confidence 456666 34555555555
No 264
>PRK00865 glutamate racemase; Provisional
Probab=20.22 E-value=2e+02 Score=29.20 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHH
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~ 423 (676)
.++.|+| |++..|++.+.+++.++.. +..+||.++++.-+.-+
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~~~-v~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLGEG-VTLIDSGEAIARRVARL 219 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcCCC-CEEECCHHHHHHHHHHH
Confidence 4566655 8899999999999998753 34578988887766543
No 265
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.17 E-value=8.2e+02 Score=23.89 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhcc
Q 005807 583 NADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAG 623 (676)
Q Consensus 583 ~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 623 (676)
++|.|...+++..++...+-.+.-...|...++.++..|..
T Consensus 42 efeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~ 82 (208)
T PRK14155 42 EAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAA 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhc
Confidence 33444444444443333333344445555666666666543
No 266
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=20.13 E-value=1.2e+02 Score=29.44 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=16.4
Q ss_pred eEEEEcCCceEEEEEEECCc
Q 005807 55 VIGVDLGTTNSCVAVMEGKN 74 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~ 74 (676)
++-||+|+|+++++++++++
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 47899999999999988763
No 267
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=20.10 E-value=3.7e+02 Score=22.81 Aligned_cols=15 Identities=0% Similarity=0.120 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhccC
Q 005807 610 IEDAVSDLRKAMAGE 624 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~ 624 (676)
+.+.-..+.+||+.+
T Consensus 107 LsEsEK~IleWL~KN 121 (122)
T PLN00078 107 LTESEKGILEWLDKN 121 (122)
T ss_pred cCHHHHHHHHHHHcc
Confidence 344444566788764
Done!