Query 005808
Match_columns 676
No_of_seqs 1007 out of 3848
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 14:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.8E-45 4E-50 359.8 32.5 298 369-666 206-503 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1E-41 2.2E-46 333.6 32.9 269 369-637 240-508 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 9.5E-39 2.1E-43 349.5 52.8 434 41-655 132-578 (615)
4 KOG0547 Translocase of outer m 100.0 5.7E-40 1.2E-44 313.6 33.4 240 415-654 326-572 (606)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-33 3.3E-38 327.6 54.4 297 369-667 589-885 (899)
6 KOG0548 Molecular co-chaperone 100.0 6.7E-35 1.4E-39 283.9 32.3 475 37-644 3-485 (539)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-32 7.2E-37 316.4 55.0 298 369-667 521-818 (899)
8 PRK11447 cellulose synthase su 100.0 1.5E-31 3.3E-36 311.3 51.9 296 369-664 291-682 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 4.1E-31 9E-36 289.4 48.0 240 428-667 307-556 (615)
10 PRK11447 cellulose synthase su 100.0 5.6E-31 1.2E-35 306.6 51.4 282 385-666 273-650 (1157)
11 PRK15174 Vi polysaccharide exp 100.0 9.9E-30 2.1E-34 277.1 47.0 353 45-654 51-409 (656)
12 PRK15174 Vi polysaccharide exp 100.0 1.4E-29 3E-34 276.0 45.1 377 44-665 13-398 (656)
13 KOG2002 TPR-containing nuclear 100.0 5.4E-29 1.2E-33 257.7 41.8 461 42-670 275-767 (1018)
14 PRK09782 bacteriophage N4 rece 100.0 9.6E-28 2.1E-32 266.6 46.5 259 402-664 462-722 (987)
15 PRK09782 bacteriophage N4 rece 100.0 3.6E-26 7.8E-31 254.1 51.9 216 448-667 476-691 (987)
16 KOG2002 TPR-containing nuclear 100.0 1.8E-26 3.9E-31 239.1 44.0 269 379-648 305-593 (1018)
17 PRK10049 pgaA outer membrane p 100.0 1.3E-26 2.9E-31 258.2 45.7 399 47-657 26-465 (765)
18 KOG1173 Anaphase-promoting com 100.0 1.6E-25 3.5E-30 219.3 37.8 286 378-663 241-533 (611)
19 KOG1126 DNA-binding cell divis 100.0 1.8E-26 3.9E-31 231.0 26.3 286 370-655 342-627 (638)
20 PRK10049 pgaA outer membrane p 100.0 1.2E-24 2.5E-29 242.7 42.8 295 369-665 105-439 (765)
21 KOG0547 Translocase of outer m 100.0 6.9E-25 1.5E-29 210.8 34.8 221 449-669 326-553 (606)
22 KOG0624 dsRNA-activated protei 99.9 7.3E-24 1.6E-28 194.8 34.5 332 29-589 29-379 (504)
23 KOG2003 TPR repeat-containing 99.9 4.7E-24 1E-28 202.8 33.2 285 377-661 415-702 (840)
24 KOG1126 DNA-binding cell divis 99.9 2.9E-25 6.3E-30 222.4 26.2 285 383-667 319-605 (638)
25 PRK11788 tetratricopeptide rep 99.9 9.7E-24 2.1E-28 219.9 36.3 279 380-659 34-322 (389)
26 KOG0624 dsRNA-activated protei 99.9 7.8E-23 1.7E-27 188.0 33.8 241 383-623 108-379 (504)
27 KOG1155 Anaphase-promoting com 99.9 9.6E-23 2.1E-27 195.0 34.4 282 376-657 257-545 (559)
28 PRK11788 tetratricopeptide rep 99.9 2.6E-22 5.7E-27 209.1 38.6 230 382-612 108-345 (389)
29 PRK14574 hmsH outer membrane p 99.9 6.1E-21 1.3E-25 208.3 49.4 441 37-656 35-521 (822)
30 KOG0495 HAT repeat protein [RN 99.9 2.6E-20 5.5E-25 185.2 40.6 293 374-667 543-865 (913)
31 KOG1155 Anaphase-promoting com 99.9 2.2E-21 4.7E-26 185.8 29.9 281 385-665 231-519 (559)
32 KOG1173 Anaphase-promoting com 99.9 1.6E-20 3.5E-25 184.5 35.9 254 413-666 242-502 (611)
33 KOG1174 Anaphase-promoting com 99.9 5.5E-20 1.2E-24 173.5 37.6 298 359-657 210-509 (564)
34 PF13429 TPR_15: Tetratricopep 99.9 1E-23 2.2E-28 207.9 13.3 264 383-648 10-277 (280)
35 KOG2076 RNA polymerase III tra 99.9 3.5E-20 7.6E-25 191.7 37.9 272 378-649 204-513 (895)
36 PRK14574 hmsH outer membrane p 99.9 1.8E-19 4E-24 196.8 45.6 298 368-666 123-497 (822)
37 KOG0548 Molecular co-chaperone 99.9 3.2E-20 7E-25 181.9 34.8 283 381-664 70-471 (539)
38 KOG0550 Molecular chaperone (D 99.9 3.9E-21 8.4E-26 181.6 24.1 289 35-549 48-353 (486)
39 KOG2003 TPR repeat-containing 99.9 1.2E-19 2.7E-24 172.9 34.2 241 394-634 469-709 (840)
40 KOG0495 HAT repeat protein [RN 99.9 6.8E-19 1.5E-23 175.2 39.3 293 368-661 571-893 (913)
41 PRK12370 invasion protein regu 99.9 5.4E-20 1.2E-24 197.8 34.5 265 383-650 260-537 (553)
42 KOG4162 Predicted calmodulin-b 99.9 2E-19 4.3E-24 183.1 35.5 290 365-654 462-789 (799)
43 KOG2076 RNA polymerase III tra 99.9 2E-19 4.3E-24 186.2 33.8 288 381-668 139-498 (895)
44 KOG1129 TPR repeat-containing 99.9 1E-19 2.2E-24 166.6 27.7 239 419-658 227-468 (478)
45 PRK12370 invasion protein regu 99.9 3.9E-19 8.4E-24 191.2 30.2 228 418-647 261-501 (553)
46 TIGR00540 hemY_coli hemY prote 99.9 3.3E-18 7.2E-23 177.4 35.4 285 381-666 84-383 (409)
47 PF13429 TPR_15: Tetratricopep 99.9 4.8E-21 1E-25 188.9 13.4 256 409-668 4-263 (280)
48 KOG1129 TPR repeat-containing 99.8 1E-19 2.2E-24 166.7 20.3 243 385-628 227-472 (478)
49 KOG1125 TPR repeat-containing 99.8 8E-20 1.7E-24 180.6 21.2 256 384-639 288-562 (579)
50 TIGR00540 hemY_coli hemY prote 99.8 4.2E-18 9.1E-23 176.6 34.7 277 371-648 108-399 (409)
51 PRK11189 lipoprotein NlpI; Pro 99.8 1.1E-18 2.4E-23 172.0 28.2 232 395-631 40-283 (296)
52 PRK10747 putative protoheme IX 99.8 1.4E-17 3.1E-22 171.6 34.4 262 383-648 86-390 (398)
53 PRK11189 lipoprotein NlpI; Pro 99.8 2.7E-18 5.7E-23 169.4 27.8 224 428-655 39-273 (296)
54 KOG1125 TPR repeat-containing 99.8 2E-19 4.4E-24 177.8 19.0 233 419-651 289-530 (579)
55 KOG0550 Molecular chaperone (D 99.8 5.5E-19 1.2E-23 167.2 20.6 271 381-651 49-353 (486)
56 COG3063 PilF Tfp pilus assembl 99.8 4.6E-18 1E-22 149.3 24.6 206 450-655 36-243 (250)
57 COG3063 PilF Tfp pilus assembl 99.8 6.8E-18 1.5E-22 148.3 25.0 207 381-587 35-243 (250)
58 TIGR02521 type_IV_pilW type IV 99.8 8.8E-18 1.9E-22 161.7 27.9 202 449-650 31-234 (234)
59 PLN03081 pentatricopeptide (PP 99.8 1.3E-16 2.9E-21 177.8 40.6 85 44-129 95-184 (697)
60 TIGR02521 type_IV_pilW type IV 99.8 1.4E-17 3E-22 160.3 28.1 201 380-580 30-232 (234)
61 KOG0553 TPR repeat-containing 99.8 3.1E-19 6.8E-24 163.5 13.9 108 32-139 77-185 (304)
62 COG2956 Predicted N-acetylgluc 99.8 1.5E-16 3.3E-21 146.1 31.2 272 383-656 37-319 (389)
63 KOG1127 TPR repeat-containing 99.8 4.7E-17 1E-21 169.5 31.0 208 462-669 471-680 (1238)
64 KOG1127 TPR repeat-containing 99.8 1.7E-17 3.7E-22 172.7 27.8 282 383-666 564-897 (1238)
65 PLN03218 maturation of RBCL 1; 99.8 8.8E-15 1.9E-19 164.9 51.9 267 380-649 506-784 (1060)
66 PLN03081 pentatricopeptide (PP 99.8 4.3E-16 9.2E-21 173.8 39.9 266 378-648 287-557 (697)
67 KOG3785 Uncharacterized conser 99.8 1.1E-15 2.4E-20 141.9 34.5 88 42-129 28-117 (557)
68 PLN03218 maturation of RBCL 1; 99.8 9.7E-15 2.1E-19 164.5 49.5 233 380-615 541-784 (1060)
69 PRK10747 putative protoheme IX 99.8 7.5E-16 1.6E-20 158.9 37.6 195 381-579 187-389 (398)
70 KOG1174 Anaphase-promoting com 99.8 1.5E-16 3.3E-21 150.5 29.1 234 392-626 277-512 (564)
71 PLN03077 Protein ECB2; Provisi 99.8 2.3E-15 5E-20 172.1 45.0 277 379-665 422-703 (857)
72 PLN02789 farnesyltranstransfer 99.8 7E-17 1.5E-21 158.3 27.6 227 431-657 53-311 (320)
73 KOG4162 Predicted calmodulin-b 99.8 4E-15 8.6E-20 152.2 38.4 272 396-667 459-768 (799)
74 PLN02789 farnesyltranstransfer 99.8 2.8E-16 6.1E-21 154.1 28.5 234 390-623 46-311 (320)
75 KOG1156 N-terminal acetyltrans 99.8 3.4E-14 7.5E-19 142.6 40.6 433 41-648 12-511 (700)
76 KOG1156 N-terminal acetyltrans 99.8 1.8E-14 3.8E-19 144.6 37.0 291 362-653 90-439 (700)
77 COG2956 Predicted N-acetylgluc 99.8 1.9E-15 4.1E-20 139.1 27.6 235 419-654 39-284 (389)
78 PLN03077 Protein ECB2; Provisi 99.7 1E-14 2.2E-19 166.9 40.0 262 380-648 454-720 (857)
79 KOG1840 Kinesin light chain [C 99.7 6.3E-16 1.4E-20 157.9 25.0 250 372-647 190-478 (508)
80 KOG1840 Kinesin light chain [C 99.7 2.2E-15 4.8E-20 154.0 26.6 233 381-613 206-478 (508)
81 KOG1915 Cell cycle control pro 99.7 6.7E-12 1.5E-16 121.5 44.2 444 41-666 77-551 (677)
82 cd05804 StaR_like StaR_like; a 99.7 4.7E-14 1E-18 145.0 31.4 275 375-650 37-338 (355)
83 KOG2376 Signal recognition par 99.7 2.8E-12 6E-17 127.7 37.7 285 380-665 174-504 (652)
84 KOG4234 TPR repeat-containing 99.6 2E-15 4.3E-20 129.0 12.1 116 36-151 95-216 (271)
85 TIGR03302 OM_YfiO outer membra 99.6 4.8E-14 1E-18 135.4 22.7 196 412-650 30-234 (235)
86 TIGR03302 OM_YfiO outer membra 99.6 3.7E-14 8.1E-19 136.2 21.6 190 376-582 28-234 (235)
87 COG3071 HemY Uncharacterized e 99.6 2.4E-12 5.3E-17 122.7 32.4 263 381-647 84-389 (400)
88 PRK15359 type III secretion sy 99.6 4.6E-14 1E-18 122.6 16.1 125 537-664 13-137 (144)
89 PF12569 NARP1: NMDA receptor- 99.6 8.2E-12 1.8E-16 129.8 34.5 269 381-649 4-335 (517)
90 KOG1915 Cell cycle control pro 99.6 1.7E-10 3.8E-15 111.9 39.9 249 364-614 305-585 (677)
91 KOG3060 Uncharacterized conser 99.6 2.4E-12 5.2E-17 115.0 24.7 207 429-635 26-241 (289)
92 cd05804 StaR_like StaR_like; a 99.6 9.4E-13 2E-17 135.3 25.9 205 411-616 2-217 (355)
93 PRK15359 type III secretion sy 99.6 1E-13 2.2E-18 120.4 15.5 123 402-527 14-136 (144)
94 PF12569 NARP1: NMDA receptor- 99.6 3.9E-11 8.5E-16 124.8 36.9 185 382-566 195-390 (517)
95 KOG3060 Uncharacterized conser 99.6 2.3E-12 5E-17 115.1 23.3 205 393-597 24-237 (289)
96 PRK10370 formate-dependent nit 99.5 5.4E-13 1.2E-17 122.4 18.5 126 530-655 52-180 (198)
97 COG5010 TadD Flp pilus assembl 99.5 1.6E-12 3.5E-17 117.6 20.8 176 434-610 52-227 (257)
98 KOG4648 Uncharacterized conser 99.5 6.7E-14 1.5E-18 129.6 11.1 104 40-143 101-205 (536)
99 PRK14720 transcript cleavage f 99.5 4.4E-12 9.5E-17 137.4 26.4 231 368-630 18-268 (906)
100 COG5010 TadD Flp pilus assembl 99.5 2.3E-12 5E-17 116.6 20.0 183 464-647 48-230 (257)
101 PRK10370 formate-dependent nit 99.5 2.2E-12 4.9E-17 118.3 19.5 124 496-619 52-178 (198)
102 PRK14720 transcript cleavage f 99.5 4.1E-12 8.9E-17 137.6 24.2 227 409-667 25-271 (906)
103 PRK15179 Vi polysaccharide bio 99.5 4.6E-12 1E-16 136.6 24.0 150 507-656 76-225 (694)
104 PF04733 Coatomer_E: Coatomer 99.5 6.8E-13 1.5E-17 128.7 15.8 259 388-655 8-272 (290)
105 KOG2376 Signal recognition par 99.5 3.3E-10 7.2E-15 113.2 34.7 261 379-643 108-400 (652)
106 KOG0543 FKBP-type peptidyl-pro 99.5 6.3E-13 1.4E-17 127.8 14.6 122 32-153 204-341 (397)
107 KOG1130 Predicted G-alpha GTPa 99.5 8.9E-13 1.9E-17 125.2 14.9 265 384-648 20-344 (639)
108 KOG1128 Uncharacterized conser 99.4 4.2E-12 9.1E-17 129.6 18.5 224 376-614 393-616 (777)
109 KOG1128 Uncharacterized conser 99.4 8.2E-12 1.8E-16 127.6 20.0 224 413-651 396-619 (777)
110 TIGR02552 LcrH_SycD type III s 99.4 3.8E-12 8.3E-17 110.5 15.3 118 538-655 4-121 (135)
111 KOG4340 Uncharacterized conser 99.4 8.1E-10 1.8E-14 101.1 29.9 387 45-654 19-449 (459)
112 COG3071 HemY Uncharacterized e 99.4 2.3E-09 4.9E-14 102.8 32.8 230 381-614 153-390 (400)
113 PRK15179 Vi polysaccharide bio 99.4 2.1E-11 4.6E-16 131.6 21.5 154 399-552 70-223 (694)
114 PLN03088 SGT1, suppressor of 99.4 6E-12 1.3E-16 127.0 16.1 112 39-150 5-117 (356)
115 PRK04841 transcriptional regul 99.4 2.1E-09 4.6E-14 124.9 39.5 269 386-654 457-766 (903)
116 KOG3785 Uncharacterized conser 99.4 4.2E-10 9.2E-15 105.3 25.7 274 382-669 58-332 (557)
117 TIGR02552 LcrH_SycD type III s 99.4 1.6E-11 3.5E-16 106.5 15.6 116 403-518 5-120 (135)
118 KOG4340 Uncharacterized conser 99.4 1.1E-10 2.3E-15 106.8 20.9 185 392-578 21-205 (459)
119 KOG4642 Chaperone-dependent E3 99.4 1.1E-12 2.4E-17 115.8 7.8 101 35-135 9-110 (284)
120 PRK15363 pathogenicity island 99.4 2.2E-11 4.7E-16 103.1 14.7 95 44-138 43-138 (157)
121 KOG1130 Predicted G-alpha GTPa 99.4 1.3E-11 2.9E-16 117.4 14.6 155 415-569 195-373 (639)
122 KOG0553 TPR repeat-containing 99.4 1.4E-11 3E-16 113.7 14.0 120 381-500 81-200 (304)
123 KOG0551 Hsp90 co-chaperone CNS 99.3 8E-12 1.7E-16 115.9 10.3 103 35-137 80-187 (390)
124 COG4783 Putative Zn-dependent 99.3 1E-09 2.2E-14 108.1 24.7 153 412-581 303-455 (484)
125 PRK15363 pathogenicity island 99.3 1.2E-10 2.7E-15 98.6 15.6 110 543-652 26-136 (157)
126 KOG2047 mRNA splicing factor [ 99.3 2.5E-07 5.4E-12 93.8 40.7 268 381-650 248-581 (835)
127 COG4783 Putative Zn-dependent 99.3 1.4E-09 2.9E-14 107.2 24.2 153 480-649 303-455 (484)
128 PF04733 Coatomer_E: Coatomer 99.3 5.9E-11 1.3E-15 115.3 14.2 234 380-621 34-272 (290)
129 KOG2047 mRNA splicing factor [ 99.2 4.2E-06 9E-11 85.2 44.6 97 30-131 165-276 (835)
130 PRK10866 outer membrane biogen 99.2 5.4E-09 1.2E-13 99.2 23.2 181 379-576 30-237 (243)
131 PF13525 YfiO: Outer membrane 99.2 2.4E-09 5.1E-14 99.3 20.3 175 379-570 3-197 (203)
132 PF12895 Apc3: Anaphase-promot 99.2 3.8E-11 8.2E-16 93.9 7.0 80 49-129 2-84 (84)
133 PF13414 TPR_11: TPR repeat; P 99.2 7E-11 1.5E-15 88.6 8.2 67 68-134 2-69 (69)
134 PRK04841 transcriptional regul 99.2 2.3E-08 4.9E-13 116.4 33.1 285 381-665 409-743 (903)
135 KOG0376 Serine-threonine phosp 99.2 3.1E-11 6.7E-16 118.6 6.4 118 36-153 4-122 (476)
136 PLN03088 SGT1, suppressor of 99.2 6.7E-10 1.4E-14 112.2 16.2 114 383-496 4-117 (356)
137 PRK10866 outer membrane biogen 99.1 1E-08 2.2E-13 97.2 21.7 182 447-645 30-238 (243)
138 PF13525 YfiO: Outer membrane 99.1 5.3E-09 1.1E-13 97.0 19.0 175 448-639 4-198 (203)
139 COG0457 NrfG FOG: TPR repeat [ 99.1 8.1E-07 1.7E-11 85.5 32.4 223 429-651 37-268 (291)
140 TIGR02795 tol_pal_ybgF tol-pal 99.1 5.5E-09 1.2E-13 88.3 14.4 105 381-485 2-112 (119)
141 KOG1070 rRNA processing protei 99.0 6.2E-08 1.3E-12 106.1 25.0 212 401-613 1444-1662(1710)
142 COG0457 NrfG FOG: TPR repeat [ 99.0 1.5E-06 3.3E-11 83.6 33.0 224 394-617 36-268 (291)
143 TIGR02795 tol_pal_ybgF tol-pal 99.0 5.3E-09 1.1E-13 88.4 13.5 105 551-655 2-112 (119)
144 KOG3081 Vesicle coat complex C 99.0 3.7E-07 8E-12 83.0 24.9 258 387-655 14-278 (299)
145 KOG0545 Aryl-hydrocarbon recep 99.0 6.4E-09 1.4E-13 92.6 13.4 107 33-139 175-300 (329)
146 COG4785 NlpI Lipoprotein NlpI, 99.0 5E-08 1.1E-12 85.4 18.5 199 378-581 62-267 (297)
147 COG4235 Cytochrome c biogenesi 99.0 9.8E-09 2.1E-13 96.0 15.1 119 534-652 139-260 (287)
148 PF13414 TPR_11: TPR repeat; P 99.0 1.6E-09 3.5E-14 81.1 7.8 67 584-650 2-69 (69)
149 PF13432 TPR_16: Tetratricopep 99.0 1.6E-09 3.4E-14 80.0 7.5 65 73-137 1-65 (65)
150 KOG1070 rRNA processing protei 99.0 2.9E-07 6.3E-12 101.0 27.5 234 431-665 1440-1682(1710)
151 PF09976 TPR_21: Tetratricopep 99.0 3.4E-08 7.4E-13 86.3 16.9 128 382-510 12-145 (145)
152 COG4235 Cytochrome c biogenesi 99.0 2.1E-08 4.5E-13 93.9 16.0 119 432-550 139-260 (287)
153 COG4785 NlpI Lipoprotein NlpI, 99.0 7.6E-08 1.6E-12 84.3 18.3 196 415-615 65-267 (297)
154 cd00189 TPR Tetratricopeptide 99.0 8.9E-09 1.9E-13 82.9 12.2 99 553-651 2-100 (100)
155 PRK11906 transcriptional regul 99.0 5.2E-08 1.1E-12 96.9 19.5 161 383-543 257-433 (458)
156 KOG4555 TPR repeat-containing 99.0 2E-08 4.3E-13 80.3 13.2 106 46-153 53-163 (175)
157 PRK10153 DNA-binding transcrip 99.0 2.6E-08 5.6E-13 104.8 18.2 132 533-665 358-499 (517)
158 PF14938 SNAP: Soluble NSF att 99.0 2.7E-08 5.8E-13 97.7 16.9 194 456-650 42-268 (282)
159 PRK02603 photosystem I assembl 99.0 3.1E-08 6.8E-13 89.5 16.0 120 377-516 31-153 (172)
160 COG3898 Uncharacterized membra 99.0 4.3E-06 9.3E-11 80.1 30.5 261 380-648 119-392 (531)
161 PF09976 TPR_21: Tetratricopep 98.9 5.6E-08 1.2E-12 85.0 16.5 117 529-646 23-145 (145)
162 PRK02603 photosystem I assembl 98.9 3.5E-08 7.6E-13 89.2 15.6 118 413-550 33-153 (172)
163 cd00189 TPR Tetratricopeptide 98.9 1.6E-08 3.5E-13 81.4 12.2 98 383-480 2-99 (100)
164 PRK10153 DNA-binding transcrip 98.9 7.6E-08 1.7E-12 101.3 20.0 136 381-517 339-487 (517)
165 KOG1941 Acetylcholine receptor 98.9 2.3E-07 4.9E-12 87.7 20.7 271 381-651 6-323 (518)
166 PF13432 TPR_16: Tetratricopep 98.9 5.9E-09 1.3E-13 76.9 8.2 64 590-653 2-65 (65)
167 PF14938 SNAP: Soluble NSF att 98.9 1.1E-07 2.3E-12 93.4 19.2 195 422-617 42-269 (282)
168 KOG4648 Uncharacterized conser 98.9 1.8E-09 3.9E-14 100.7 5.5 226 384-618 100-334 (536)
169 CHL00033 ycf3 photosystem I as 98.9 4.5E-08 9.7E-13 88.2 14.5 102 395-496 13-119 (168)
170 PF12895 Apc3: Anaphase-promot 98.9 6.5E-09 1.4E-13 81.2 7.8 81 394-475 2-84 (84)
171 PRK11906 transcriptional regul 98.9 1.8E-07 3.8E-12 93.2 19.5 158 419-576 259-432 (458)
172 PRK15331 chaperone protein Sic 98.9 4.7E-08 1E-12 83.4 13.0 120 544-665 30-149 (165)
173 CHL00033 ycf3 photosystem I as 98.9 5.1E-08 1.1E-12 87.8 14.0 104 551-654 35-155 (168)
174 PRK15331 chaperone protein Sic 98.9 6.1E-08 1.3E-12 82.7 13.3 112 370-482 26-137 (165)
175 KOG3081 Vesicle coat complex C 98.8 1.9E-06 4.2E-11 78.5 22.7 239 422-669 15-257 (299)
176 PRK10803 tol-pal system protei 98.8 1.4E-07 3.1E-12 90.0 16.6 106 380-485 141-253 (263)
177 KOG1941 Acetylcholine receptor 98.8 5.2E-07 1.1E-11 85.3 19.1 262 386-647 48-359 (518)
178 KOG0543 FKBP-type peptidyl-pro 98.8 1E-07 2.2E-12 92.5 14.9 147 485-650 210-357 (397)
179 KOG1308 Hsp70-interacting prot 98.8 2.4E-09 5.2E-14 100.5 3.4 106 30-135 108-214 (377)
180 PRK10803 tol-pal system protei 98.8 1.1E-07 2.4E-12 90.8 14.2 105 551-655 142-253 (263)
181 COG4105 ComL DNA uptake lipopr 98.8 5.3E-06 1.1E-10 76.2 23.1 181 378-575 31-228 (254)
182 KOG3617 WD40 and TPR repeat-co 98.7 1.6E-05 3.4E-10 83.2 28.4 243 382-645 859-1171(1416)
183 KOG2053 Mitochondrial inherita 98.7 1.9E-05 4.2E-10 83.8 29.3 229 389-618 17-259 (932)
184 KOG2053 Mitochondrial inherita 98.7 1.3E-05 2.7E-10 85.1 27.7 215 369-584 31-259 (932)
185 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.3E-07 7.2E-12 92.1 15.5 124 488-614 174-297 (395)
186 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 4.7E-07 1E-11 91.0 16.0 118 423-543 177-294 (395)
187 COG4105 ComL DNA uptake lipopr 98.7 7.5E-06 1.6E-10 75.2 21.5 189 448-653 33-238 (254)
188 PF13512 TPR_18: Tetratricopep 98.7 3.2E-07 7E-12 76.6 11.5 96 42-137 16-133 (142)
189 PF13371 TPR_9: Tetratricopept 98.7 9.9E-08 2.1E-12 72.3 7.9 64 76-139 2-65 (73)
190 COG3898 Uncharacterized membra 98.6 4.9E-05 1.1E-09 73.1 26.7 265 384-654 87-364 (531)
191 PF12688 TPR_5: Tetratrico pep 98.6 9.5E-07 2.1E-11 72.8 13.5 91 418-508 4-100 (120)
192 PF13512 TPR_18: Tetratricopep 98.6 1.3E-06 2.8E-11 73.0 14.3 87 378-464 7-99 (142)
193 KOG2471 TPR repeat-containing 98.6 6.8E-06 1.5E-10 81.0 21.3 121 375-495 234-381 (696)
194 COG1729 Uncharacterized protei 98.6 1.1E-06 2.4E-11 81.4 14.7 105 383-487 143-253 (262)
195 PF12688 TPR_5: Tetratrico pep 98.6 1.2E-06 2.6E-11 72.2 13.4 96 382-477 2-103 (120)
196 COG4700 Uncharacterized protei 98.6 1.1E-05 2.5E-10 69.2 19.4 148 497-646 70-220 (251)
197 PF13371 TPR_9: Tetratricopept 98.6 2.4E-07 5.1E-12 70.2 8.3 68 592-659 2-69 (73)
198 PF14559 TPR_19: Tetratricopep 98.6 1.3E-07 2.9E-12 70.4 6.7 64 596-659 2-65 (68)
199 PF14559 TPR_19: Tetratricopep 98.6 1.9E-07 4.1E-12 69.6 7.3 65 392-456 2-66 (68)
200 KOG4234 TPR repeat-containing 98.5 2.7E-06 5.9E-11 73.8 13.4 112 381-492 95-211 (271)
201 COG1729 Uncharacterized protei 98.5 3.1E-06 6.6E-11 78.6 14.3 102 554-655 144-251 (262)
202 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.6E-07 1E-11 90.2 9.3 66 67-132 73-141 (453)
203 COG4700 Uncharacterized protei 98.5 4.2E-05 9E-10 65.9 18.6 124 452-576 92-218 (251)
204 KOG2471 TPR repeat-containing 98.4 7.5E-05 1.6E-09 73.9 21.2 266 384-650 209-650 (696)
205 KOG2796 Uncharacterized conser 98.4 0.00037 7.9E-09 63.7 23.6 134 519-652 179-319 (366)
206 KOG2796 Uncharacterized conser 98.4 0.0006 1.3E-08 62.3 24.6 226 380-618 68-319 (366)
207 PF13424 TPR_12: Tetratricopep 98.3 1.1E-06 2.4E-11 67.4 6.2 63 70-132 6-75 (78)
208 KOG3617 WD40 and TPR repeat-co 98.3 0.00047 1E-08 72.7 25.8 217 419-645 804-1106(1416)
209 KOG4555 TPR repeat-containing 98.3 3.1E-05 6.8E-10 62.3 13.2 95 557-651 49-147 (175)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 4.1E-06 8.9E-11 83.5 10.2 68 547-614 71-141 (453)
211 KOG1586 Protein required for f 98.3 0.00069 1.5E-08 60.9 22.8 97 523-619 119-229 (288)
212 KOG2610 Uncharacterized conser 98.3 0.00015 3.3E-09 68.4 19.1 160 419-578 107-274 (491)
213 KOG1586 Protein required for f 98.2 0.0015 3.3E-08 58.7 23.9 178 393-585 26-229 (288)
214 PF06552 TOM20_plant: Plant sp 98.2 1.4E-05 3.1E-10 69.0 10.2 92 52-143 7-120 (186)
215 KOG1914 mRNA cleavage and poly 98.2 0.0098 2.1E-07 60.3 31.1 71 372-443 11-81 (656)
216 PF13424 TPR_12: Tetratricopep 98.2 2.9E-06 6.3E-11 65.1 5.3 65 584-648 4-75 (78)
217 PF13431 TPR_17: Tetratricopep 98.2 2.4E-06 5.2E-11 52.7 3.6 32 92-123 2-33 (34)
218 KOG2610 Uncharacterized conser 98.1 0.00027 5.9E-09 66.7 18.0 159 454-612 108-274 (491)
219 KOG1585 Protein required for f 98.1 0.0019 4.1E-08 58.6 22.4 168 378-545 28-218 (308)
220 PF05843 Suf: Suppressor of fo 98.1 0.00016 3.5E-09 70.7 17.5 138 518-655 2-143 (280)
221 PF06552 TOM20_plant: Plant sp 98.1 3.2E-05 7E-10 66.8 10.9 105 533-661 7-122 (186)
222 PF04184 ST7: ST7 protein; In 98.1 0.0014 2.9E-08 66.0 22.1 186 389-587 176-382 (539)
223 PF05843 Suf: Suppressor of fo 98.0 0.00022 4.8E-09 69.7 16.4 133 417-549 3-139 (280)
224 KOG1585 Protein required for f 98.0 0.0015 3.3E-08 59.1 19.3 199 415-643 31-251 (308)
225 PF00515 TPR_1: Tetratricopept 98.0 1.1E-05 2.4E-10 50.2 4.4 32 71-102 3-34 (34)
226 KOG4507 Uncharacterized conser 98.0 0.00085 1.8E-08 68.1 19.5 98 560-657 616-714 (886)
227 KOG4642 Chaperone-dependent E3 98.0 8.4E-05 1.8E-09 66.8 11.1 98 381-478 10-107 (284)
228 PF13428 TPR_14: Tetratricopep 98.0 1.8E-05 3.8E-10 52.6 5.2 42 70-111 2-43 (44)
229 KOG1310 WD40 repeat protein [G 97.9 2.6E-05 5.6E-10 77.7 7.9 105 32-136 370-478 (758)
230 KOG0530 Protein farnesyltransf 97.9 0.0038 8.2E-08 57.3 20.7 126 396-521 58-185 (318)
231 PF13428 TPR_14: Tetratricopep 97.9 2.4E-05 5.1E-10 52.0 4.9 41 620-660 2-42 (44)
232 PF13281 DUF4071: Domain of un 97.9 0.0027 5.9E-08 63.1 20.3 165 452-617 144-337 (374)
233 PF02259 FAT: FAT domain; Int 97.8 0.012 2.6E-07 60.2 26.4 66 586-651 253-341 (352)
234 PF00515 TPR_1: Tetratricopept 97.8 4.4E-05 9.6E-10 47.4 4.7 33 103-135 1-33 (34)
235 KOG0985 Vesicle coat protein c 97.8 0.01 2.3E-07 64.4 24.5 230 388-643 1055-1336(1666)
236 PF13281 DUF4071: Domain of un 97.8 0.012 2.6E-07 58.7 23.5 32 553-584 307-338 (374)
237 PF04184 ST7: ST7 protein; In 97.8 0.0023 5E-08 64.4 18.5 197 447-656 166-383 (539)
238 PF07079 DUF1347: Protein of u 97.8 0.055 1.2E-06 54.0 31.3 92 387-478 51-157 (549)
239 KOG0376 Serine-threonine phosp 97.7 5.7E-05 1.2E-09 75.3 6.6 111 383-493 6-116 (476)
240 PF07719 TPR_2: Tetratricopept 97.7 7.6E-05 1.7E-09 46.3 4.8 32 71-102 3-34 (34)
241 KOG2300 Uncharacterized conser 97.7 0.071 1.5E-06 53.6 36.1 191 461-654 287-520 (629)
242 KOG1550 Extracellular protein 97.7 0.014 3.1E-07 63.0 24.7 262 379-652 242-542 (552)
243 KOG0530 Protein farnesyltransf 97.7 0.012 2.7E-07 54.0 19.8 248 394-658 39-308 (318)
244 PF02259 FAT: FAT domain; Int 97.7 0.019 4E-07 58.8 24.2 50 620-669 253-308 (352)
245 KOG0545 Aryl-hydrocarbon recep 97.7 0.00045 9.7E-09 62.4 10.2 112 517-652 178-297 (329)
246 KOG1258 mRNA processing protei 97.6 0.12 2.6E-06 53.8 30.4 292 364-655 62-402 (577)
247 PF07719 TPR_2: Tetratricopept 97.6 0.00016 3.4E-09 44.9 4.9 34 619-652 1-34 (34)
248 PF10300 DUF3808: Protein of u 97.6 0.032 7E-07 58.8 25.0 177 470-649 178-377 (468)
249 KOG3616 Selective LIM binding 97.6 0.15 3.2E-06 53.9 30.0 35 618-652 994-1028(1636)
250 COG3118 Thioredoxin domain-con 97.6 0.0048 1E-07 58.1 16.2 151 380-531 133-286 (304)
251 PF13431 TPR_17: Tetratricopep 97.6 5.9E-05 1.3E-09 46.5 2.5 32 608-639 2-33 (34)
252 KOG4507 Uncharacterized conser 97.5 0.0023 4.9E-08 65.2 13.7 98 42-139 217-319 (886)
253 KOG1550 Extracellular protein 97.5 0.075 1.6E-06 57.5 26.5 255 396-663 227-516 (552)
254 COG2909 MalT ATP-dependent tra 97.4 0.22 4.7E-06 54.4 28.3 269 378-652 344-651 (894)
255 COG3118 Thioredoxin domain-con 97.4 0.016 3.5E-07 54.7 17.1 150 415-565 134-286 (304)
256 KOG1914 mRNA cleavage and poly 97.4 0.068 1.5E-06 54.6 22.4 214 403-616 267-503 (656)
257 KOG2300 Uncharacterized conser 97.4 0.2 4.4E-06 50.5 39.8 214 427-643 287-551 (629)
258 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0019 4.2E-08 61.2 10.6 95 556-650 86-184 (390)
259 COG2976 Uncharacterized protei 97.3 0.015 3.3E-07 51.2 15.3 117 537-654 72-194 (207)
260 PF12968 DUF3856: Domain of Un 97.3 0.0058 1.3E-07 48.6 11.0 90 42-131 15-128 (144)
261 PF10345 Cohesin_load: Cohesin 97.3 0.43 9.3E-06 52.7 36.2 278 365-643 39-428 (608)
262 PF10300 DUF3808: Protein of u 97.3 0.016 3.6E-07 61.0 18.3 114 498-611 248-373 (468)
263 COG2909 MalT ATP-dependent tra 97.3 0.31 6.7E-06 53.3 27.2 234 379-612 413-686 (894)
264 PF13181 TPR_8: Tetratricopept 97.2 0.00069 1.5E-08 41.9 4.6 31 104-134 2-32 (34)
265 KOG0985 Vesicle coat protein c 97.2 0.062 1.3E-06 58.8 21.4 242 378-640 1101-1375(1666)
266 PF03704 BTAD: Bacterial trans 97.2 0.013 2.9E-07 51.1 13.8 117 383-511 8-124 (146)
267 COG0790 FOG: TPR repeat, SEL1 97.2 0.16 3.4E-06 50.4 23.1 193 426-654 52-272 (292)
268 KOG1308 Hsp70-interacting prot 97.2 0.00041 8.9E-09 66.1 4.2 95 386-480 119-213 (377)
269 PF08631 SPO22: Meiosis protei 97.1 0.3 6.6E-06 47.8 26.9 122 392-513 4-151 (278)
270 PF07079 DUF1347: Protein of u 97.1 0.37 8E-06 48.4 35.8 144 520-667 382-542 (549)
271 KOG1258 mRNA processing protei 97.1 0.48 1E-05 49.5 34.1 295 367-661 99-483 (577)
272 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0024 5.2E-08 43.7 6.2 42 71-112 3-44 (53)
273 PF13181 TPR_8: Tetratricopept 97.1 0.00098 2.1E-08 41.2 4.1 32 620-651 2-33 (34)
274 PF03704 BTAD: Bacterial trans 97.1 0.014 3.1E-07 50.8 12.8 63 585-647 62-124 (146)
275 COG2976 Uncharacterized protei 97.1 0.044 9.6E-07 48.4 15.2 95 453-548 93-190 (207)
276 KOG3616 Selective LIM binding 97.1 0.098 2.1E-06 55.2 20.2 172 455-645 712-908 (1636)
277 PF08424 NRDE-2: NRDE-2, neces 96.9 0.085 1.8E-06 52.8 18.6 30 552-581 155-184 (321)
278 PF08631 SPO22: Meiosis protei 96.9 0.46 1E-05 46.5 26.8 222 425-647 3-274 (278)
279 COG0790 FOG: TPR repeat, SEL1 96.9 0.51 1.1E-05 46.7 24.9 170 387-565 47-236 (292)
280 KOG0890 Protein kinase of the 96.9 0.58 1.3E-05 56.6 27.1 280 386-668 1454-1803(2382)
281 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.5 1.1E-05 47.4 22.3 240 403-652 290-535 (660)
282 PF08424 NRDE-2: NRDE-2, neces 96.9 0.094 2E-06 52.5 18.2 145 403-547 7-184 (321)
283 PF13176 TPR_7: Tetratricopept 96.8 0.0017 3.7E-08 40.7 3.6 28 105-132 1-28 (36)
284 PF13174 TPR_6: Tetratricopept 96.8 0.0037 7.9E-08 38.2 4.7 33 620-652 1-33 (33)
285 KOG4814 Uncharacterized conser 96.6 0.037 8E-07 57.4 13.0 94 42-135 360-460 (872)
286 PF04910 Tcf25: Transcriptiona 96.6 0.14 3E-06 51.9 16.9 141 409-549 34-225 (360)
287 PF04910 Tcf25: Transcriptiona 96.5 0.076 1.6E-06 53.7 14.7 171 476-654 33-228 (360)
288 PF13174 TPR_6: Tetratricopept 96.5 0.0046 1E-07 37.7 3.9 30 105-134 2-31 (33)
289 KOG1464 COP9 signalosome, subu 96.5 0.29 6.2E-06 45.5 16.6 189 393-581 39-261 (440)
290 KOG3824 Huntingtin interacting 96.5 0.0068 1.5E-07 56.8 6.4 69 73-141 120-188 (472)
291 KOG0546 HSP90 co-chaperone CPR 96.5 0.0048 1E-07 59.4 5.4 104 42-145 228-351 (372)
292 KOG3783 Uncharacterized conser 96.5 0.19 4.2E-06 51.6 16.9 241 398-651 250-523 (546)
293 PF13176 TPR_7: Tetratricopept 96.4 0.0036 7.8E-08 39.2 2.7 29 621-649 1-29 (36)
294 PF15015 NYD-SP12_N: Spermatog 96.3 0.0094 2E-07 58.4 6.8 86 44-129 184-288 (569)
295 KOG4151 Myosin assembly protei 96.3 0.017 3.7E-07 61.7 9.0 122 28-149 45-173 (748)
296 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.026 5.5E-07 38.7 6.4 40 620-659 2-41 (53)
297 smart00028 TPR Tetratricopepti 96.2 0.01 2.2E-07 35.7 4.2 31 71-101 3-33 (34)
298 PRK10941 hypothetical protein; 96.2 0.047 1E-06 52.4 10.4 71 587-657 183-253 (269)
299 PF09613 HrpB1_HrpK: Bacterial 96.1 0.11 2.5E-06 44.7 11.5 86 381-466 10-95 (160)
300 PRK10941 hypothetical protein; 96.1 0.061 1.3E-06 51.6 11.0 70 72-141 184-253 (269)
301 COG4976 Predicted methyltransf 96.0 0.009 1.9E-07 53.8 4.6 60 77-136 3-62 (287)
302 KOG2041 WD40 repeat protein [G 96.0 1.1 2.4E-05 47.5 19.9 179 377-577 688-878 (1189)
303 KOG2396 HAT (Half-A-TPR) repea 96.0 0.064 1.4E-06 54.3 10.9 94 534-627 88-182 (568)
304 KOG1463 26S proteasome regulat 96.0 1.7 3.6E-05 42.2 22.9 266 384-651 7-319 (411)
305 PF04781 DUF627: Protein of un 96.0 0.12 2.6E-06 41.3 10.0 103 387-512 2-107 (111)
306 PF09613 HrpB1_HrpK: Bacterial 95.9 0.15 3.2E-06 44.0 11.3 78 523-600 16-93 (160)
307 COG5107 RNA14 Pre-mRNA 3'-end 95.9 2.3 5.1E-05 42.9 26.0 275 369-647 30-361 (660)
308 KOG1464 COP9 signalosome, subu 95.8 0.44 9.5E-06 44.3 14.5 49 429-477 41-93 (440)
309 COG4649 Uncharacterized protei 95.8 1.1 2.4E-05 38.9 16.6 123 388-510 65-194 (221)
310 PF09986 DUF2225: Uncharacteri 95.7 0.12 2.6E-06 47.9 10.8 101 565-665 91-212 (214)
311 KOG3824 Huntingtin interacting 95.7 0.041 8.9E-07 51.8 7.5 112 554-665 119-235 (472)
312 KOG2041 WD40 repeat protein [G 95.6 2 4.4E-05 45.6 19.7 137 386-542 739-877 (1189)
313 PF04781 DUF627: Protein of un 95.6 0.18 3.9E-06 40.3 9.7 102 490-614 3-107 (111)
314 COG4649 Uncharacterized protei 95.5 1.5 3.2E-05 38.2 16.7 136 528-664 69-211 (221)
315 smart00028 TPR Tetratricopepti 95.5 0.026 5.7E-07 33.7 3.9 32 620-651 2-33 (34)
316 COG3914 Spy Predicted O-linked 95.4 0.84 1.8E-05 47.6 16.0 129 500-628 48-185 (620)
317 PF14561 TPR_20: Tetratricopep 95.4 0.22 4.9E-06 38.8 9.5 64 571-634 8-73 (90)
318 KOG3783 Uncharacterized conser 95.3 1.4 3E-05 45.6 17.3 235 369-617 255-523 (546)
319 KOG3364 Membrane protein invol 95.3 0.42 9.2E-06 39.5 11.1 75 585-659 32-111 (149)
320 PF14561 TPR_20: Tetratricopep 95.3 0.22 4.7E-06 38.9 9.2 44 403-446 10-53 (90)
321 PRK15180 Vi polysaccharide bio 95.3 0.087 1.9E-06 52.8 8.5 123 495-617 301-423 (831)
322 PRK15180 Vi polysaccharide bio 95.2 0.33 7.1E-06 48.9 12.3 128 390-517 298-425 (831)
323 PF10345 Cohesin_load: Cohesin 95.2 6.6 0.00014 43.4 41.6 229 418-647 304-605 (608)
324 COG5159 RPN6 26S proteasome re 95.0 3.2 7E-05 39.2 21.9 265 385-651 7-317 (421)
325 KOG2396 HAT (Half-A-TPR) repea 95.0 5.1 0.00011 41.2 36.1 101 548-648 457-559 (568)
326 TIGR02561 HrpB1_HrpK type III 94.9 0.41 8.9E-06 40.6 10.4 84 382-465 11-94 (153)
327 TIGR02561 HrpB1_HrpK type III 94.7 0.49 1.1E-05 40.1 10.2 71 530-600 23-93 (153)
328 PRK11619 lytic murein transgly 94.6 9 0.00019 42.4 27.9 262 371-647 86-374 (644)
329 COG4976 Predicted methyltransf 94.5 0.061 1.3E-06 48.6 4.9 58 561-618 5-62 (287)
330 PRK13184 pknD serine/threonine 94.5 9.4 0.0002 43.8 22.8 100 384-484 478-587 (932)
331 COG3914 Spy Predicted O-linked 94.4 2.1 4.5E-05 44.9 16.0 127 400-526 50-185 (620)
332 KOG0890 Protein kinase of the 94.4 18 0.00039 44.9 34.3 62 415-478 1670-1731(2382)
333 PF12968 DUF3856: Domain of Un 94.3 2.3 5.1E-05 34.4 13.1 92 385-476 13-127 (144)
334 KOG1310 WD40 repeat protein [G 94.0 0.19 4.2E-06 51.2 7.7 103 381-483 374-479 (758)
335 PF10602 RPN7: 26S proteasome 93.9 1 2.3E-05 40.4 11.6 97 381-477 36-141 (177)
336 KOG3364 Membrane protein invol 93.8 1.3 2.8E-05 36.8 10.5 78 378-455 29-111 (149)
337 PF04053 Coatomer_WDAD: Coatom 93.7 5.3 0.00011 41.8 17.8 159 388-576 268-427 (443)
338 PF10602 RPN7: 26S proteasome 93.6 1.9 4.2E-05 38.7 12.8 99 551-649 36-143 (177)
339 KOG2422 Uncharacterized conser 93.6 7.1 0.00015 40.9 17.7 154 429-583 252-451 (665)
340 COG5191 Uncharacterized conser 93.5 0.1 2.2E-06 49.4 4.4 77 547-623 103-180 (435)
341 KOG4814 Uncharacterized conser 93.3 1 2.2E-05 47.3 11.5 97 382-478 355-457 (872)
342 KOG1538 Uncharacterized conser 93.3 6.6 0.00014 41.6 17.1 213 382-611 586-830 (1081)
343 KOG1839 Uncharacterized protei 93.2 1.1 2.3E-05 51.5 12.5 163 486-648 935-1128(1236)
344 KOG0686 COP9 signalosome, subu 93.2 0.69 1.5E-05 45.9 9.6 125 5-129 112-255 (466)
345 PF12862 Apc5: Anaphase-promot 93.1 0.52 1.1E-05 37.2 7.5 58 43-100 5-72 (94)
346 KOG1538 Uncharacterized conser 93.1 4.9 0.00011 42.5 15.9 110 456-577 710-830 (1081)
347 KOG1839 Uncharacterized protei 93.0 1.1 2.3E-05 51.5 12.0 166 380-545 931-1127(1236)
348 PF04053 Coatomer_WDAD: Coatom 92.8 7.8 0.00017 40.6 17.5 27 448-474 346-372 (443)
349 COG1747 Uncharacterized N-term 92.6 14 0.00031 38.2 23.5 179 469-652 86-292 (711)
350 PF15015 NYD-SP12_N: Spermatog 92.4 2.8 6E-05 41.9 12.5 58 588-645 231-288 (569)
351 COG3629 DnrI DNA-binding trans 92.4 1.5 3.2E-05 42.2 10.6 59 72-130 156-214 (280)
352 PF13374 TPR_10: Tetratricopep 92.4 0.28 6.1E-06 31.5 4.2 29 105-133 4-32 (42)
353 KOG2422 Uncharacterized conser 92.4 10 0.00022 39.9 16.8 154 463-617 252-451 (665)
354 COG5191 Uncharacterized conser 92.4 0.29 6.2E-06 46.5 5.6 88 505-592 95-183 (435)
355 PF13374 TPR_10: Tetratricopep 92.3 0.32 7E-06 31.2 4.5 29 70-98 3-31 (42)
356 PF10579 Rapsyn_N: Rapsyn N-te 92.2 1 2.2E-05 33.5 7.1 57 41-97 11-71 (80)
357 PRK13184 pknD serine/threonine 92.1 9.8 0.00021 43.6 18.2 99 421-520 481-589 (932)
358 PF09986 DUF2225: Uncharacteri 92.1 2.4 5.2E-05 39.4 11.4 32 585-616 165-196 (214)
359 KOG0529 Protein geranylgeranyl 91.9 7.4 0.00016 39.1 14.9 132 465-596 45-194 (421)
360 PF10516 SHNi-TPR: SHNi-TPR; 91.6 0.4 8.7E-06 30.1 3.9 29 104-132 2-30 (38)
361 KOG2581 26S proteasome regulat 91.6 9.6 0.00021 38.2 15.0 126 493-618 136-280 (493)
362 KOG0529 Protein geranylgeranyl 91.5 6.7 0.00014 39.4 14.2 99 566-664 90-194 (421)
363 PF04190 DUF410: Protein of un 91.5 14 0.0003 35.7 21.3 25 482-506 89-113 (260)
364 PF12862 Apc5: Anaphase-promot 91.0 1.1 2.5E-05 35.3 7.1 59 76-134 5-72 (94)
365 PF10516 SHNi-TPR: SHNi-TPR; 90.8 0.54 1.2E-05 29.6 4.0 29 71-99 3-31 (38)
366 PF07721 TPR_4: Tetratricopept 90.3 0.45 9.8E-06 27.0 3.1 24 104-127 2-25 (26)
367 COG2912 Uncharacterized conser 89.9 2 4.2E-05 40.8 8.6 67 590-656 186-252 (269)
368 PF10579 Rapsyn_N: Rapsyn N-te 89.5 4.5 9.9E-05 30.2 8.4 62 381-442 6-70 (80)
369 PF07720 TPR_3: Tetratricopept 89.3 1.3 2.9E-05 27.4 4.8 32 620-651 2-35 (36)
370 KOG0128 RNA-binding protein SA 89.2 40 0.00087 37.3 24.4 253 369-623 101-385 (881)
371 PF11207 DUF2989: Protein of u 88.9 4.5 9.8E-05 36.6 9.7 71 568-639 123-198 (203)
372 COG2912 Uncharacterized conser 88.7 2.7 5.8E-05 39.9 8.6 71 555-625 185-255 (269)
373 PF09205 DUF1955: Domain of un 88.0 5.5 0.00012 33.1 8.7 102 20-129 41-146 (161)
374 PF04190 DUF410: Protein of un 87.4 29 0.00062 33.5 22.3 133 515-667 88-242 (260)
375 PF07721 TPR_4: Tetratricopept 87.3 0.73 1.6E-05 26.1 2.6 22 621-642 3-24 (26)
376 COG1747 Uncharacterized N-term 87.3 41 0.00088 35.1 25.7 77 397-476 82-158 (711)
377 PF07720 TPR_3: Tetratricopept 87.0 2.6 5.5E-05 26.2 5.0 21 383-403 3-23 (36)
378 COG3629 DnrI DNA-binding trans 86.8 4 8.6E-05 39.3 8.7 63 415-477 153-215 (280)
379 KOG1463 26S proteasome regulat 86.8 34 0.00073 33.7 19.3 247 381-630 48-329 (411)
380 KOG3807 Predicted membrane pro 86.6 33 0.00072 33.4 20.2 212 416-658 185-401 (556)
381 KOG3807 Predicted membrane pro 86.3 34 0.00074 33.3 18.9 212 382-624 185-401 (556)
382 COG3947 Response regulator con 86.2 2.5 5.5E-05 40.1 6.8 58 72-129 282-339 (361)
383 PF09670 Cas_Cas02710: CRISPR- 84.5 20 0.00043 36.8 13.2 63 382-444 132-198 (379)
384 PF11207 DUF2989: Protein of u 84.3 14 0.00031 33.5 10.3 70 500-570 123-197 (203)
385 KOG2114 Vacuolar assembly/sort 83.3 66 0.0014 35.8 16.3 243 390-654 343-596 (933)
386 COG5159 RPN6 26S proteasome re 83.3 44 0.00095 32.0 14.8 94 555-648 129-235 (421)
387 KOG2114 Vacuolar assembly/sort 82.9 30 0.00065 38.3 13.7 191 421-631 340-534 (933)
388 PF11817 Foie-gras_1: Foie gra 82.4 47 0.001 31.8 14.1 26 384-409 13-38 (247)
389 KOG2581 26S proteasome regulat 82.1 61 0.0013 32.8 19.0 32 552-583 248-279 (493)
390 PF10255 Paf67: RNA polymerase 82.0 2.5 5.3E-05 43.1 5.3 57 73-130 126-191 (404)
391 COG5187 RPN7 26S proteasome re 81.9 46 0.001 31.9 12.9 99 551-649 115-222 (412)
392 COG3947 Response regulator con 81.1 7.2 0.00016 37.2 7.5 58 588-645 282-339 (361)
393 COG5536 BET4 Protein prenyltra 81.1 23 0.00049 33.7 10.6 52 503-554 94-147 (328)
394 PF10373 EST1_DNA_bind: Est1 D 80.7 6.3 0.00014 38.5 7.8 60 88-147 1-60 (278)
395 KOG4014 Uncharacterized conser 80.6 41 0.00089 29.9 15.7 186 378-580 31-233 (248)
396 PF11817 Foie-gras_1: Foie gra 80.3 40 0.00088 32.2 12.9 79 567-645 154-244 (247)
397 PF14863 Alkyl_sulf_dimr: Alky 79.7 8.2 0.00018 33.0 6.9 54 69-122 70-123 (141)
398 KOG2063 Vacuolar assembly/sort 79.6 1.2E+02 0.0026 34.7 18.4 58 72-129 310-372 (877)
399 PF10373 EST1_DNA_bind: Est1 D 78.9 7.8 0.00017 37.9 7.8 62 502-563 1-62 (278)
400 COG4941 Predicted RNA polymera 78.8 70 0.0015 31.5 17.4 184 465-657 212-403 (415)
401 TIGR03504 FimV_Cterm FimV C-te 78.7 4.1 8.9E-05 26.6 3.7 26 622-647 2-27 (44)
402 PF12739 TRAPPC-Trs85: ER-Golg 78.1 93 0.002 32.5 16.0 30 622-651 373-402 (414)
403 COG4941 Predicted RNA polymera 77.6 76 0.0017 31.3 16.2 189 430-627 211-407 (415)
404 PF00244 14-3-3: 14-3-3 protei 76.8 64 0.0014 30.6 12.8 28 419-446 5-32 (236)
405 PF10255 Paf67: RNA polymerase 76.8 6.2 0.00013 40.3 6.3 99 553-651 124-231 (404)
406 PF12739 TRAPPC-Trs85: ER-Golg 76.7 1E+02 0.0022 32.2 15.8 29 384-412 211-239 (414)
407 TIGR03504 FimV_Cterm FimV C-te 75.9 6.3 0.00014 25.8 4.0 25 385-409 3-27 (44)
408 PF14863 Alkyl_sulf_dimr: Alky 75.8 12 0.00026 32.0 6.8 52 381-432 70-121 (141)
409 smart00386 HAT HAT (Half-A-TPR 75.2 8 0.00017 22.6 4.3 12 469-480 7-18 (33)
410 smart00386 HAT HAT (Half-A-TPR 74.8 8.8 0.00019 22.5 4.5 27 396-422 2-28 (33)
411 PF09670 Cas_Cas02710: CRISPR- 74.3 62 0.0014 33.3 12.9 61 486-546 134-198 (379)
412 PF00244 14-3-3: 14-3-3 protei 73.7 83 0.0018 29.8 15.5 30 452-481 4-33 (236)
413 COG5536 BET4 Protein prenyltra 73.3 57 0.0012 31.2 10.9 126 398-523 49-190 (328)
414 PRK11619 lytic murein transgly 72.5 1.6E+02 0.0036 32.7 32.3 184 459-645 251-465 (644)
415 KOG2063 Vacuolar assembly/sort 70.8 2E+02 0.0044 33.0 19.8 113 381-493 504-636 (877)
416 PF12854 PPR_1: PPR repeat 70.1 11 0.00024 22.9 4.0 26 619-644 7-32 (34)
417 PF12854 PPR_1: PPR repeat 70.0 13 0.00027 22.7 4.2 26 103-128 7-32 (34)
418 KOG0687 26S proteasome regulat 69.7 1.2E+02 0.0026 29.9 12.9 101 379-479 102-211 (393)
419 COG4455 ImpE Protein of avirul 69.7 34 0.00074 31.4 8.3 58 561-618 11-68 (273)
420 smart00299 CLH Clathrin heavy 69.6 69 0.0015 27.2 14.7 31 497-527 21-51 (140)
421 COG4455 ImpE Protein of avirul 68.8 98 0.0021 28.6 12.7 61 389-449 9-69 (273)
422 KOG0687 26S proteasome regulat 67.8 1.3E+02 0.0028 29.6 12.5 99 551-649 104-211 (393)
423 PF13041 PPR_2: PPR repeat fam 67.4 31 0.00067 23.0 6.2 21 489-509 9-29 (50)
424 PRK12798 chemotaxis protein; R 67.2 1.6E+02 0.0034 30.3 22.2 55 462-516 161-218 (421)
425 smart00299 CLH Clathrin heavy 66.2 82 0.0018 26.7 15.1 47 460-507 18-64 (140)
426 PF09205 DUF1955: Domain of un 65.9 42 0.00092 28.1 7.5 54 595-648 96-149 (161)
427 KOG0546 HSP90 co-chaperone CPR 65.6 13 0.00028 36.7 5.3 127 488-629 227-353 (372)
428 cd02682 MIT_AAA_Arch MIT: doma 65.2 20 0.00042 26.7 5.0 24 72-95 9-32 (75)
429 PHA02537 M terminase endonucle 64.7 11 0.00024 35.2 4.6 91 47-137 94-212 (230)
430 KOG4279 Serine/threonine prote 64.5 1.6E+02 0.0034 32.6 13.2 20 564-583 379-398 (1226)
431 PF13041 PPR_2: PPR repeat fam 64.1 40 0.00087 22.4 6.5 28 451-478 5-32 (50)
432 TIGR02710 CRISPR-associated pr 62.5 1.9E+02 0.0041 29.6 13.1 56 385-440 134-196 (380)
433 cd02682 MIT_AAA_Arch MIT: doma 61.5 17 0.00037 27.0 4.2 27 105-131 8-34 (75)
434 COG4259 Uncharacterized protei 61.5 58 0.0013 25.6 7.0 56 90-145 58-114 (121)
435 KOG4279 Serine/threonine prote 61.4 51 0.0011 36.1 9.1 181 415-620 201-401 (1226)
436 KOG0276 Vesicle coat complex C 58.7 1.4E+02 0.003 32.1 11.4 17 560-576 730-746 (794)
437 KOG0686 COP9 signalosome, subu 58.5 2.2E+02 0.0047 29.1 19.0 93 485-577 152-255 (466)
438 KOG0276 Vesicle coat complex C 57.0 2.2E+02 0.0048 30.7 12.5 101 493-611 647-747 (794)
439 PF01535 PPR: PPR repeat; Int 56.8 18 0.0004 20.7 3.2 20 557-576 6-25 (31)
440 PF11846 DUF3366: Domain of un 56.1 36 0.00077 31.1 6.5 47 603-650 129-175 (193)
441 KOG2561 Adaptor protein NUB1, 55.6 2.3E+02 0.005 29.2 11.9 27 485-511 269-295 (568)
442 cd02681 MIT_calpain7_1 MIT: do 53.5 28 0.00062 26.0 4.3 19 47-65 17-35 (76)
443 PF04097 Nic96: Nup93/Nic96; 51.7 3.8E+02 0.0082 29.8 16.0 27 628-655 514-540 (613)
444 KOG0889 Histone acetyltransfer 50.8 7.9E+02 0.017 33.3 18.8 48 619-666 2812-2859(3550)
445 cd02677 MIT_SNX15 MIT: domain 50.4 24 0.00051 26.4 3.5 11 51-61 21-31 (75)
446 PF02064 MAS20: MAS20 protein 50.0 68 0.0015 26.6 6.3 32 41-72 67-99 (121)
447 TIGR00756 PPR pentatricopeptid 50.0 37 0.0008 19.9 3.9 22 556-577 5-26 (35)
448 PF04090 RNA_pol_I_TF: RNA pol 49.3 2.1E+02 0.0046 26.2 10.7 32 453-484 45-76 (199)
449 TIGR02508 type_III_yscG type I 49.3 56 0.0012 25.8 5.3 72 17-93 21-92 (115)
450 PF07219 HemY_N: HemY protein 49.2 82 0.0018 25.5 6.8 50 381-430 59-108 (108)
451 PF04090 RNA_pol_I_TF: RNA pol 48.7 2.2E+02 0.0047 26.1 10.9 66 381-446 41-107 (199)
452 KOG1920 IkappaB kinase complex 48.6 5.3E+02 0.011 30.6 15.8 112 485-611 941-1052(1265)
453 cd02680 MIT_calpain7_2 MIT: do 48.3 12 0.00027 27.8 1.7 19 48-66 18-36 (75)
454 cd02683 MIT_1 MIT: domain cont 47.2 37 0.0008 25.5 4.1 17 48-64 18-34 (77)
455 cd02677 MIT_SNX15 MIT: domain 46.7 30 0.00065 25.8 3.5 14 117-130 20-33 (75)
456 KOG0128 RNA-binding protein SA 46.4 4.8E+02 0.01 29.5 27.7 217 371-589 137-385 (881)
457 PF04212 MIT: MIT (microtubule 46.1 40 0.00087 24.5 4.2 23 74-96 10-32 (69)
458 PRK09687 putative lyase; Provi 46.0 3E+02 0.0064 26.9 28.4 221 415-652 37-267 (280)
459 PF11846 DUF3366: Domain of un 46.0 64 0.0014 29.4 6.5 44 57-100 132-175 (193)
460 cd02680 MIT_calpain7_2 MIT: do 45.7 41 0.00089 25.1 4.0 15 429-443 20-34 (75)
461 PF04348 LppC: LppC putative l 45.0 7.2 0.00016 42.1 0.0 100 378-477 21-126 (536)
462 PHA02537 M terminase endonucle 44.5 35 0.00075 31.9 4.3 35 620-654 170-213 (230)
463 PF01239 PPTA: Protein prenylt 43.8 66 0.0014 18.8 4.3 29 88-116 2-30 (31)
464 PF13226 DUF4034: Domain of un 43.7 2.9E+02 0.0063 26.9 10.5 135 388-534 7-150 (277)
465 PRK15490 Vi polysaccharide bio 42.8 3.2E+02 0.007 29.7 11.6 78 530-609 21-98 (578)
466 PF10475 DUF2450: Protein of u 42.3 2.8E+02 0.006 27.3 10.7 119 10-129 101-223 (291)
467 PF13812 PPR_3: Pentatricopept 41.4 70 0.0015 18.7 4.2 23 454-476 6-28 (34)
468 KOG4014 Uncharacterized conser 41.2 2.7E+02 0.0058 25.1 15.3 49 598-648 181-233 (248)
469 PF12753 Nro1: Nuclear pore co 40.9 46 0.001 33.6 4.8 47 601-649 334-392 (404)
470 cd02681 MIT_calpain7_1 MIT: do 39.6 53 0.0011 24.6 3.9 26 72-97 9-34 (76)
471 COG5187 RPN7 26S proteasome re 39.2 3.7E+02 0.0081 26.1 15.6 97 483-579 115-220 (412)
472 KOG4151 Myosin assembly protei 38.7 1.1E+02 0.0024 33.9 7.5 32 633-664 486-517 (748)
473 smart00101 14_3_3 14-3-3 homol 38.5 3.6E+02 0.0078 25.7 16.5 47 601-647 144-199 (244)
474 PF04348 LppC: LppC putative l 38.3 11 0.00023 40.9 0.0 57 451-507 26-85 (536)
475 KOG2561 Adaptor protein NUB1, 38.2 1.6E+02 0.0036 30.2 8.0 26 520-545 166-191 (568)
476 KOG2758 Translation initiation 38.2 4.1E+02 0.0088 26.3 18.3 204 358-561 106-332 (432)
477 PF02184 HAT: HAT (Half-A-TPR) 38.1 61 0.0013 19.5 3.1 25 51-75 2-26 (32)
478 PF04212 MIT: MIT (microtubule 38.0 77 0.0017 23.0 4.6 27 105-131 7-33 (69)
479 PF10938 YfdX: YfdX protein; 37.7 1.6E+02 0.0036 25.7 7.3 61 37-97 76-145 (155)
480 cd02678 MIT_VPS4 MIT: domain c 37.3 74 0.0016 23.7 4.4 17 48-64 18-34 (75)
481 cd02683 MIT_1 MIT: domain cont 37.2 60 0.0013 24.4 3.9 23 74-96 11-33 (77)
482 KOG2062 26S proteasome regulat 37.0 6.4E+02 0.014 28.2 20.7 278 381-669 397-695 (929)
483 PF13226 DUF4034: Domain of un 36.6 4.1E+02 0.0089 25.9 10.7 36 533-568 115-150 (277)
484 cd02656 MIT MIT: domain contai 36.1 1.1E+02 0.0025 22.6 5.3 18 48-65 18-35 (75)
485 TIGR02710 CRISPR-associated pr 35.9 5E+02 0.011 26.6 12.9 54 489-542 136-196 (380)
486 PRK12798 chemotaxis protein; R 35.6 5.2E+02 0.011 26.7 27.8 220 422-645 87-321 (421)
487 PF04097 Nic96: Nup93/Nic96; 35.6 6.6E+02 0.014 27.9 18.3 151 389-544 266-441 (613)
488 PF09145 Ubiq-assoc: Ubiquitin 35.5 43 0.00093 21.6 2.3 25 41-65 8-33 (46)
489 PF14929 TAF1_subA: TAF RNA Po 34.8 6.3E+02 0.014 27.5 14.9 157 465-632 300-468 (547)
490 KOG1920 IkappaB kinase complex 34.5 8.6E+02 0.019 29.0 20.3 135 459-613 890-1027(1265)
491 KOG4521 Nuclear pore complex, 33.5 8.9E+02 0.019 28.8 17.6 29 381-409 920-948 (1480)
492 KOG1497 COP9 signalosome, subu 33.0 4.4E+02 0.0095 26.1 9.6 89 585-673 103-200 (399)
493 PF10952 DUF2753: Protein of u 32.9 1.6E+02 0.0034 24.5 5.7 25 555-579 5-29 (140)
494 TIGR03362 VI_chp_7 type VI sec 32.4 5.1E+02 0.011 25.7 16.8 147 392-546 110-279 (301)
495 TIGR03362 VI_chp_7 type VI sec 32.3 5.1E+02 0.011 25.7 16.8 158 482-648 99-279 (301)
496 PF10952 DUF2753: Protein of u 32.0 2.9E+02 0.0063 23.0 7.1 26 521-546 5-30 (140)
497 PRK15490 Vi polysaccharide bio 31.9 2.6E+02 0.0056 30.4 8.9 69 369-439 30-98 (578)
498 smart00671 SEL1 Sel1-like repe 31.6 1.1E+02 0.0025 18.1 4.0 24 42-65 6-34 (36)
499 PF12925 APP_E2: E2 domain of 31.0 3.5E+02 0.0076 24.6 8.2 68 72-140 101-170 (193)
500 cd02679 MIT_spastin MIT: domai 30.8 94 0.002 23.5 4.0 30 103-132 8-37 (79)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-45 Score=359.78 Aligned_cols=298 Identities=23% Similarity=0.276 Sum_probs=289.9
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (676)
|..+.+...|.-+-+|-.+|-.+..+|+...|+..|+++++++|+.+++|+++|.+|...+.+++|+..|.+++.+.|++
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 56666777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (676)
..++-++|.+|..+|..+-|+..|+++++..|..++++.++|..+-..|+..+|..+|.+++.+.|+.+++..++|.++.
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (676)
.+|.+++|...|.++++..|....+..++|.+|.++|++++|+.+|+.++.+.|...+++.++|..|..+|+...|+..|
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV 666 (676)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 666 (676)
.+++..+|...+++.+||.+|...|+..+|+..|++++++.|+.++++.++..++.-.
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988876543
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1e-41 Score=333.60 Aligned_cols=269 Identities=18% Similarity=0.233 Sum_probs=260.8
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (676)
...+..+.+|.-+++++.+|.+|-..+.|+.|+.+|.+++...|+++.++.++|.+|+.+|..+-|+..|++++++.|+.
T Consensus 240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F 319 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF 319 (966)
T ss_pred HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (676)
++++.++|.++...|+..+|..+|.+++...|..+++..++|.+|.+.|.+++|...|.+++...|....++.++|.+|.
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK 399 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (676)
++|++++|+.+|++++.+.|....++.++|..|..+|+.+.|+.+|.+++..+|...+++.++|.+|...|+..+|+..|
T Consensus 400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhccHHH
Q 005808 609 SSGLGIDPSNIECLYLRASCYHAIGEYRE 637 (676)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~ 637 (676)
+.++++.|+.++++.+++.++.-..++.+
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999998876665544
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=9.5e-39 Score=349.50 Aligned_cols=434 Identities=18% Similarity=0.198 Sum_probs=340.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 005808 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (676)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~ 120 (676)
.+++.+|..|+|++|+.+|+++|++.|++..|.|+|.||+++|+|++|+.+|++||+++|+++++++++|.+|..+|+++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 56778899999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcccc
Q 005808 121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS 200 (676)
Q Consensus 121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (676)
+|+..|..++.+.+-.......+++..-. ....... ...
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~a~~~~-----~~~----------------------------------- 250 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLK-KFAESKA-----KEI----------------------------------- 250 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHH-HHHHHHH-----HHH-----------------------------------
Confidence 99999988866654333222222211100 0000000 000
Q ss_pred CcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCC
Q 005808 201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD 280 (676)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (676)
... .+.. .+....+..+...+.
T Consensus 251 ----------l~~---~~~~-------~~~~~~~~~~~~~~~-------------------------------------- 272 (615)
T TIGR00990 251 ----------LET---KPEN-------LPSVTFVGNYLQSFR-------------------------------------- 272 (615)
T ss_pred ----------Hhc---CCCC-------CCCHHHHHHHHHHcc--------------------------------------
Confidence 000 0000 000000000000000
Q ss_pred cccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhh
Q 005808 281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN 360 (676)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (676)
.. ..
T Consensus 273 ----~~------------------------------------------------------------------------~~ 276 (615)
T TIGR00990 273 ----PK------------------------------------------------------------------------PR 276 (615)
T ss_pred ----CC------------------------------------------------------------------------cc
Confidence 00 00
Q ss_pred HHHHhhHHHHHHhhccCCCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHH
Q 005808 361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQ---VNEGKYASAISIFDQILKE---DPMYPEALIGRGTARAFQRELEAA 434 (676)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A 434 (676)
. ..+......++.....++.++..+ ...++|++|+..|++++.. .|....++..+|.++...|++++|
T Consensus 277 --~----~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 277 --P----AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred --h----hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 0 000000001111122233333332 3357899999999999986 477788999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005808 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (676)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 514 (676)
+..|++++..+|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH------H
Q 005808 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA------Y 588 (676)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~ 588 (676)
++..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++.+.|..... +
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998864322 2
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 589 HLRGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 589 ~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
...+.+ +...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 233333 3447999999999999999999999999999999999999999999999999998876553
No 4
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-40 Score=313.65 Aligned_cols=240 Identities=23% Similarity=0.300 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (676)
+.++...|..++..|++-.|...|+.++.++|.+...|+.++.+|....+.++....|.++..++|.++++|+..|++++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 56778888888889999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (676)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 574 (676)
-++++++|+..|++++.++|++..++..++.+.++++++++++..|+.+.+..|..++++...|.++..++++++|++.|
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcC------cHHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 575 QQVLYIDKR------FSKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 575 ~~al~~~~~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
+.++.+.|. ++..+...|.+.. ..+++..|+..+.++++++|....++..||.+..++|+.++|+++|++++.
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999998887 5555555554433 358889999999999999999889999999999999999999999999988
Q ss_pred hCCCcHH
Q 005808 648 LELDSME 654 (676)
Q Consensus 648 ~~p~~~~ 654 (676)
+.....+
T Consensus 566 lArt~~E 572 (606)
T KOG0547|consen 566 LARTESE 572 (606)
T ss_pred HHHhHHH
Confidence 7655444
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-33 Score=327.64 Aligned_cols=297 Identities=19% Similarity=0.138 Sum_probs=284.5
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (676)
.+.......|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++...|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 668 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 44455566788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (676)
..++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..+++++...|++ ..+..++.++.
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 747 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 67888999999
Q ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (676)
..|++++|+..+++++...|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+..+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
++++...|+++..+..+|.++...|++++|+.+|+++++.+|.++.++..++.+++...
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999998887654
No 6
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-35 Score=283.93 Aligned_cols=475 Identities=17% Similarity=0.153 Sum_probs=341.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005808 37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (676)
Q Consensus 37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 115 (676)
.+...+++.+|..|+|+.|+.+|++||.++ +|+..|+||..||..+|+|++|+.|..+++.++|+|+++|.|+|.+++.
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 566788999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCC
Q 005808 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS 195 (676)
Q Consensus 116 l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (676)
+|+|++|+..|.++|+. +|+|..++.|+ .++. ...... ...-..+.+.......+..
T Consensus 83 lg~~~eA~~ay~~GL~~--------------d~~n~~L~~gl-----~~a~-~~~~~~---~~~~~~p~~~~~l~~~p~t 139 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEK--------------DPSNKQLKTGL-----AQAY-LEDYAA---DQLFTKPYFHEKLANLPLT 139 (539)
T ss_pred cccHHHHHHHHHHHhhc--------------CCchHHHHHhH-----HHhh-hHHHHh---hhhccCcHHHHHhhcChhh
Confidence 99999999999999554 55555555555 2221 000000 0111111222222222222
Q ss_pred CccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcc
Q 005808 196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR 275 (676)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (676)
.....+ +.+..+......+|..+..++.+.+.+........ ...+.. .. .......
T Consensus 140 ~~~~~~---~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~~~---~~----~~~~~~~------------- 195 (539)
T KOG0548|consen 140 NYSLSD---PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKG-VDELLF---YA----SGIEILA------------- 195 (539)
T ss_pred hhhhcc---HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhc-Cccccc---cc----cccccCC-------------
Confidence 222223 67777777777888888888776666554444331 100000 00 0000000
Q ss_pred cCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhh
Q 005808 276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML 355 (676)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (676)
...++. .+...+.....
T Consensus 196 -------~~~~p~-----------------------------------------------~~~~~~~~~~~--------- 212 (539)
T KOG0548|consen 196 -------SMAEPC-----------------------------------------------KQEHNGFPIIE--------- 212 (539)
T ss_pred -------CCCCcc-----------------------------------------------cccCCCCCccc---------
Confidence 000000 00000000000
Q ss_pred hhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808 356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI 435 (676)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 435 (676)
+...+.... ......-.+|...+...++..|++.|..++.++ .+...+...+.+++..|.+.+++
T Consensus 213 -d~~ee~~~k-------------~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~ 277 (539)
T KOG0548|consen 213 -DNTEERRVK-------------EKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECI 277 (539)
T ss_pred -hhHHHHHHH-------------HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhh
Confidence 001111100 114566688999999999999999999999999 88888999999999999999999
Q ss_pred HHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005808 436 SDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (676)
Q Consensus 436 ~~~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (676)
..+..+++...... .+...+|..+...++++.|+.+|.+++..... ..+.......++++.....
T Consensus 278 ~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~ 349 (539)
T KOG0548|consen 278 ELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAER 349 (539)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHH
Confidence 99999887655432 23444666777888899999999997765543 4445556667777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH
Q 005808 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588 (676)
Q Consensus 509 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 588 (676)
..-.+|.-..-....|..++..|+|..|+.+|.+++..+|+++..|.+.|.+|..+|.+..|+...+.+++++|+....|
T Consensus 350 ~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 350 KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 77777877777777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (676)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (676)
...|.++..+.+|++|++.|+++++.+|++.++.-.+..|...+.......+..++
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999888888888888765444444444444
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-32 Score=316.43 Aligned_cols=298 Identities=17% Similarity=0.178 Sum_probs=274.6
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (676)
.+..+....|.+...+..++.++...|++++|+..+.+++..+|.+...+..++.++...|++++|+..+++++...|.+
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 600 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS 600 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 45556667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (676)
...+..+|.++...|++++|+..|++++...|.++..+..+|.++...|++++|+..+++++..+|++...+..++.++.
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (676)
..|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|...+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876 77888999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
+++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..++..+....
T Consensus 760 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999988888887643
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.5e-31 Score=311.29 Aligned_cols=296 Identities=17% Similarity=0.098 Sum_probs=203.2
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcccHHHH
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--------------ALIGRGTARAFQRELEAA 434 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~g~~~~A 434 (676)
.+......+|.++..++.+|.+++..|++++|+..|+++++.+|++.. ....+|.++...|++++|
T Consensus 291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 444555567777777777777777777777777777777777776532 123446667777777777
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-----------------------
Q 005808 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI----------------------- 491 (676)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~----------------------- 491 (676)
+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.
T Consensus 371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 777777777777777777777777777777777777777777777776655444333
Q ss_pred -------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH
Q 005808 492 -------------------VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552 (676)
Q Consensus 492 -------------------~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 552 (676)
++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++..|.++.
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 3345677777777788877777877777777788888888888888888777777777766
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HhcCcCcHHHHHHHH
Q 005808 553 AWGHLTQFYQDLANSEKALECLQQV----------------------------------------LYIDKRFSKAYHLRG 592 (676)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~a----------------------------------------l~~~~~~~~~~~~la 592 (676)
.++.++..+...+++++|+..++++ ++..|.++..+..+|
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 6665555555555555554444321 123455556666666
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (676)
.++...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..++++++..|++...+..++.++.
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 666667777777777777776667666667777777766677777777777666666666666665555554
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.1e-31 Score=289.36 Aligned_cols=240 Identities=20% Similarity=0.242 Sum_probs=221.8
Q ss_pred cccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005808 428 QRELEAAISDFTEAIQS---NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (676)
Q Consensus 428 ~g~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (676)
.+++++|+..|++++.. .|....++..+|.++...|++++|+..|++++..+|.....+..+|.++...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 36899999999999986 477788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc
Q 005808 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (676)
Q Consensus 505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 584 (676)
.+++++..+|+++.+++.+|.++...|++++|+..|++++.++|++..++..+|.++...|++++|+..|++++...|.+
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH------HHHHHHHH-HHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC------LYLRASCY-HAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
+.++..+|.++...|++++|+..|++++.+.|++... +...+.++ ...|++++|...++++++++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999999999999999999998875332 23333333 4479999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 005808 658 LQCLAFYQVL 667 (676)
Q Consensus 658 ~~~~~~~~~~ 667 (676)
.++.++++..
T Consensus 547 ~la~~~~~~g 556 (615)
T TIGR00990 547 TMAQLLLQQG 556 (615)
T ss_pred HHHHHHHHcc
Confidence 8988887644
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.6e-31 Score=306.56 Aligned_cols=282 Identities=20% Similarity=0.215 Sum_probs=252.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--------------
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-------------- 450 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------- 450 (676)
..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 456899999999999999999999999999999999999999999999999999999999997642
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----
Q 005808 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL----- 525 (676)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~----- 525 (676)
....+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 123457888999999999999999999999999999999999999999999999999999999998776655444
Q ss_pred -------------------------------------HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q 005808 526 -------------------------------------ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (676)
Q Consensus 526 -------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 568 (676)
++...|++++|+..|+++++.+|+++.+++.+|.+|...|+++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------------------------------------
Q 005808 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG------------------------------------- 611 (676)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------------------------- 611 (676)
+|+..+++++...|.++..++.++..+...+++++|+..++++
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988888887777777777777766543
Q ss_pred ---hcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808 612 ---LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV 666 (676)
Q Consensus 612 ---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 666 (676)
++..|.++..+..+|.++...|++++|+..|+++++.+|++++++..++.++...
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2246788889999999999999999999999999999999999999998887543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=9.9e-30 Score=277.11 Aligned_cols=353 Identities=13% Similarity=0.027 Sum_probs=302.5
Q ss_pred HHHhcCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005808 45 KLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (676)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~ 123 (676)
++..+|++++|+..+..++...|+ +..++++|.+.+..|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 457889999999999999988844 4458888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccccCcC
Q 005808 124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ 203 (676)
Q Consensus 124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (676)
..|++++.+.|
T Consensus 131 ~~l~~Al~l~P--------------------------------------------------------------------- 141 (656)
T PRK15174 131 DLAEQAWLAFS--------------------------------------------------------------------- 141 (656)
T ss_pred HHHHHHHHhCC---------------------------------------------------------------------
Confidence 99998843222
Q ss_pred CcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCCccc
Q 005808 204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI 283 (676)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (676)
T Consensus 142 -------------------------------------------------------------------------------- 141 (656)
T PRK15174 142 -------------------------------------------------------------------------------- 141 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhhHHH
Q 005808 284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK 363 (676)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (676)
T Consensus 142 -------------------------------------------------------------------------------- 141 (656)
T PRK15174 142 -------------------------------------------------------------------------------- 141 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (676)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (676)
.++..+..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++++.
T Consensus 142 ---------------~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 142 ---------------GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred ---------------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 12556778899999999999999999999999999888877654 47888999999999999988
Q ss_pred hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhCCCCHH
Q 005808 444 SNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA----AVEDLSACVKLDKENKS 518 (676)
Q Consensus 444 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~ 518 (676)
..|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++ |+..+++++..+|++..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~ 285 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR 285 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence 8753 344455668888899999999999999999999999999999999999999885 89999999999999999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 598 (676)
++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+..+|.++...
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999998887777788899999
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
|++++|+..|+++++..|++. ...+++|...|.++++..+....
T Consensus 366 G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~~ 409 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPPE 409 (656)
T ss_pred CCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999988864 34556777777777776655443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.4e-29 Score=275.95 Aligned_cols=377 Identities=13% Similarity=0.019 Sum_probs=337.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHccc----CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 005808 44 AKLCSLRNWSKAIRILDSLLAQS----YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (676)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~----~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~ 119 (676)
..++++.+|+.---+++.+-+.. .+....-..+..+++.|++++|+..+..++...|+++.+++.+|.+.+..|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 13 TTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCH
Confidence 44567778877766777666654 33333566677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccc
Q 005808 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (676)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (676)
++|+..|+++++++|++
T Consensus 93 ~~A~~~l~~~l~~~P~~--------------------------------------------------------------- 109 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQ--------------------------------------------------------------- 109 (656)
T ss_pred HHHHHHHHHHHHhCCCC---------------------------------------------------------------
Confidence 99999999999777653
Q ss_pred cCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCC
Q 005808 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (676)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (676)
T Consensus 110 -------------------------------------------------------------------------------- 109 (656)
T PRK15174 110 -------------------------------------------------------------------------------- 109 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhh
Q 005808 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (676)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (676)
T Consensus 110 -------------------------------------------------------------------------------- 109 (656)
T PRK15174 110 -------------------------------------------------------------------------------- 109 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (676)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (676)
+.++..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+.
T Consensus 110 ---------------------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 110 ---------------------PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred ---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 34556678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 005808 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (676)
Q Consensus 440 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 518 (676)
+++...|++..++..++ .+...|++++|+..+++++...|. .......++.++...|++++|+..+++++..+|+++.
T Consensus 169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 99999999998887764 478899999999999999998763 3445566788999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccHHH----HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 005808 519 AYTYLGLALSSIGEYKK----AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 594 (676)
++..+|.++...|++++ |+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999986 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (676)
+...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++....+..+...+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 99999999999999999999999888888889999999999999999999999999977655554444443
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-29 Score=257.65 Aligned_cols=461 Identities=15% Similarity=0.090 Sum_probs=369.3
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHccc-CChh---HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHH
Q 005808 42 ELAK-LCSLRNWSKAIRILDSLLAQS-YEIQ---DICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSA 115 (676)
Q Consensus 42 ~~~~-~~~~~~y~~Ai~~y~~ai~~~-~~~~---~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~ 115 (676)
.|+. +|-.|+|..+..++..+|... ..+. .++.+|.+|..+|+|++|...|..++..+|++ +-+++++|+.|..
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 4444 568999999999999999876 3333 38999999999999999999999999999999 7799999999999
Q ss_pred cCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCC
Q 005808 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS 195 (676)
Q Consensus 116 l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (676)
.|+++.|+.+|++.+...|+..+...-+..++.......... ..
T Consensus 355 ~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~-----d~------------------------------- 398 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR-----DK------------------------------- 398 (1018)
T ss_pred hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH-----HH-------------------------------
Confidence 999999999999999999988888776666555442000000 00
Q ss_pred CccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcc
Q 005808 196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR 275 (676)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (676)
+..++.+ +.
T Consensus 399 -----------a~~~l~K--------------------------~~---------------------------------- 407 (1018)
T KOG2002|consen 399 -----------ASNVLGK--------------------------VL---------------------------------- 407 (1018)
T ss_pred -----------HHHHHHH--------------------------HH----------------------------------
Confidence 0000000 00
Q ss_pred cCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhh
Q 005808 276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML 355 (676)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (676)
...+....++..++.++......
T Consensus 408 ---------------------------------------------------------~~~~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 408 ---------------------------------------------------------EQTPVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred ---------------------------------------------------------hcccccHHHHHHHHHHHHhcChH
Confidence 00000111222222222222211
Q ss_pred hhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHH
Q 005808 356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMY-----PEALIGRGTAR 425 (676)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~-----~~~~~~la~~~ 425 (676)
.. -.........+. ....+..++.+...|-.++..|++.+|...|.+++.. +++. ....+++|.++
T Consensus 431 ~s--L~~~~~A~d~L~--~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 431 AS--LDAYGNALDILE--SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred HH--HHHHHHHHHHHH--HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 11 111122111111 2334467999999999999999999999999999876 2221 23589999999
Q ss_pred HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005808 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (676)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 505 (676)
...++++.|.+.|..++..+|...+++.++|......++..+|..++..++..+..++.++..+|.++.....+..|.+-
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999998
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHH------------cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808 506 LSACVKLDK--ENKSAYTYLGLALSS------------IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (676)
Q Consensus 506 ~~~al~~~~--~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 571 (676)
|+..++... .++.+...||.++++ .+.+++|++.|.++++.+|.+..+-..+|.++...|++.+|.
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH
Confidence 877766532 456777888887764 356889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 572 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
.+|.++.+...+++.+|.++|.||..+|+|..|++.|+.+++.. .+++.++..||.++++.|.+.+|..++.+++.+.
T Consensus 667 dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 667 DIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999998888889999999999999999999999999999764 3568999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhhh
Q 005808 650 LDSMEKFVLQCLAFYQVLFDM 670 (676)
Q Consensus 650 p~~~~~~~~~~~~~~~~~~~~ 670 (676)
|.++...++++.+..+.....
T Consensus 747 p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 747 PSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred CccchHHhHHHHHHHHHHHHH
Confidence 999999999999998876543
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=9.6e-28 Score=266.55 Aligned_cols=259 Identities=12% Similarity=0.001 Sum_probs=231.3
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808 402 SIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479 (676)
Q Consensus 402 ~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 479 (676)
..+.+++...|. ++.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|+++....
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 334444445566 88999999999987 889999999999999999765 36667888889999999999999988776
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (676)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 559 (676)
|.+ ..+..+|.++...|++++|+.+++++++.+|.....+..++......|++++|+..++++++.+|+ +.++..+|.
T Consensus 540 p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~ 617 (987)
T PRK09782 540 MSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARAT 617 (987)
T ss_pred CCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 654 557888999999999999999999999999998888777777777889999999999999999997 899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 005808 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (676)
Q Consensus 560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (676)
++.+.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808 640 KDYDAALDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 640 ~~~~~al~~~p~~~~~~~~~~~~~~ 664 (676)
.+|+++++++|++..+....+....
T Consensus 698 ~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 698 HYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHhcCCCCchhhhhhhHHHH
Confidence 9999999999999887666655543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=3.6e-26 Score=254.09 Aligned_cols=216 Identities=14% Similarity=0.075 Sum_probs=193.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (676)
++.++..+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..++++....|. ...+..+|.++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHH
Confidence 56677888888876 788889999999998888754 3666777778999999999999998776555 45577889999
Q ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (676)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (676)
...|++++|+.+++++++..|.....+..++......|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999998888777777777789999999999999999996 89999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++....
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999987643
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-26 Score=239.14 Aligned_cols=269 Identities=19% Similarity=0.196 Sum_probs=161.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 457 (676)
...+.+|.+|+++..+|+|++|..+|.++++.+|++ .-.++.+|..+...|+++.|+..|++++...|++.+....+|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 344456666666666666666666666666666655 5555666666666666666666666666666666666666666
Q ss_pred HHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Q 005808 458 ARAALG----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----DKENKSAYTYLGLALS 528 (676)
Q Consensus 458 ~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~ 528 (676)
+|...+ ..+.|..++.+++...|.+.++|..++.++....-+.. +..|..++.. .+-.++.+.++|..++
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 665554 44556666666666666666666666666554444333 5666555532 2233556666666666
Q ss_pred HcccHHHHHHHHHHHHhc-----Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q 005808 529 SIGEYKKAEEAHLKAIQL-----DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 598 (676)
..|++.+|...|..++.. +++. ....+++|.++...+++..|.+.|..+++.+|....++..+|......
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 666666666666666554 1111 123556666666666666666666666666666666666666555555
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
++..+|...+..++..+..++.+|..+|.++.....+..|.+-|+.+++.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 66666666666666666666666666666666666666666655555543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1.3e-26 Score=258.18 Aligned_cols=399 Identities=14% Similarity=0.018 Sum_probs=321.3
Q ss_pred HhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005808 47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (676)
Q Consensus 47 ~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~ 125 (676)
.-.|++++|+..|.+++... .....+.++|.++..+|++++|+..++++++++|+++.+++.+|.++...|++++|+..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46899999999999998866 44446899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccccCcCCc
Q 005808 126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR 205 (676)
Q Consensus 126 ~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (676)
++++++..|+.+. ...+..+.-. .
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~-------~------------------------------------------------ 129 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKR-------A------------------------------------------------ 129 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHH-------C------------------------------------------------
Confidence 9999888777655 3222110000 0
Q ss_pred chhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCCcccCC
Q 005808 206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN 285 (676)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (676)
T Consensus 130 -------------------------------------------------------------------------------- 129 (765)
T PRK10049 130 -------------------------------------------------------------------------------- 129 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhhHHHHh
Q 005808 286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN 365 (676)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (676)
+ ....
T Consensus 130 -------------------------------------------------------------------g--------~~~~ 134 (765)
T PRK10049 130 -------------------------------------------------------------------G--------RHWD 134 (765)
T ss_pred -------------------------------------------------------------------C--------CHHH
Confidence 0 0011
Q ss_pred hHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HcccH---H
Q 005808 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARA-----FQREL---E 432 (676)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~-----~~g~~---~ 432 (676)
....+.++....|.++..++.+|.++...|..++|+..++++.. .|... .....+..+.. ..+++ +
T Consensus 135 Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 135 ELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 12255566677888899999999999999999999999987765 54421 11222222222 22334 7
Q ss_pred HHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 005808 433 AAISDFTEAIQSNPSAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVE 504 (676)
Q Consensus 433 ~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~ 504 (676)
+|+..++.+++..|.++. ++......+...|++++|+..|++++...|..+ .+...+|.+|...|++++|+.
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 899999999976443322 222212334677999999999999998865432 244446999999999999999
Q ss_pred HHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHcC
Q 005808 505 DLSACVKLDKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---------------FLEAWGHLTQFYQDLA 565 (676)
Q Consensus 505 ~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~ 565 (676)
.|++++..+|.+ ......++.++...|++++|+..++++....|. ...++..++.++...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 999999888765 356777888899999999999999999988763 2456788999999999
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..+++.+|.++...|++++|...++++
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHH
Q 005808 646 LDLELDSMEKFV 657 (676)
Q Consensus 646 l~~~p~~~~~~~ 657 (676)
++..|+++.+..
T Consensus 454 l~~~Pd~~~~~~ 465 (765)
T PRK10049 454 VAREPQDPGVQR 465 (765)
T ss_pred HHhCCCCHHHHH
Confidence 999999998643
No 18
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-25 Score=219.28 Aligned_cols=286 Identities=18% Similarity=0.163 Sum_probs=265.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 457 (676)
..+++.....+..++..++|.+..++++..++.+|-++.++....-+++..|+..+-...-.+.+...|+.+..|+..|.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 34588999999999999999999999999999999998888666669999999888888888999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (676)
.|...|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|...++++-|.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----C---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----R---FSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (676)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~---~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (676)
..|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ . -...+.++|.++.+.+.+++|+..|++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999984322 1 234688999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (676)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (676)
++...|.++.++..+|.+|..+|+++.|+++|.+++-+.|++.-+--.++.+.
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976655555443
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.8e-26 Score=231.02 Aligned_cols=286 Identities=18% Similarity=0.216 Sum_probs=264.7
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 005808 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (676)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (676)
+..+.........++..+|+.|+..++|++|..+|+.+-+..|-..+..-....+++...+--+--.+.+..+..+|+.+
T Consensus 342 ~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sP 421 (638)
T KOG1126|consen 342 FEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSP 421 (638)
T ss_pred HHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc
Confidence 33444555666678889999999999999999999999999998877777777888877765555555667788899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005808 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (676)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 529 (676)
+.|..+|.+|..+++++.|+++|+++++++|....+|..+|.-+.....++.|..+|+.++..+|.+-.+|+.+|.+|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (676)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (676)
+++++.|.-+|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++...+..|.++...+++++|+..++
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
+..+..|++..+++.+|.+|.++|+.+.|+..|.-|+.++|.-...
T Consensus 582 eLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 582 ELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 9999999999999999999999999999999999999999987663
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=1.2e-24 Score=242.68 Aligned_cols=295 Identities=13% Similarity=0.002 Sum_probs=241.8
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (676)
.+.......|.++. ++.+|.++...|++++|+..++++++..|+++.++..+|.++...|..+.|+..++++.. .|..
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~ 182 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE 182 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH
Confidence 44555666888899 999999999999999999999999999999999999999999999999999999987775 5543
Q ss_pred HH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 005808 449 GE-----AWKRRGQARA-----ALGES---VEAIQDLSKALEFEPNSAD-------ILHERGIVNFKFKDFNAAVEDLSA 508 (676)
Q Consensus 449 ~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~ 508 (676)
.. ....+..+.. ..+++ ++|+..++.++...|.++. +.......+...|++++|+..|++
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 1222222222 22334 7899999999976444332 222212234677999999999999
Q ss_pred HHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808 509 CVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (676)
Q Consensus 509 al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 583 (676)
+++..+.. ..+...+|.++...|++++|+.+|+++++..|.+ ......++.++...|++++|+..++++....|.
T Consensus 263 ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 263 LKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 99886442 2344557999999999999999999999988765 456777888899999999999999999988762
Q ss_pred ---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 584 ---------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 584 ---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.+
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 23567889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHH
Q 005808 649 ELDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 649 ~p~~~~~~~~~~~~~~~ 665 (676)
+|++...++.++.++.+
T Consensus 423 ~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 423 EPRNINLEVEQAWTALD 439 (765)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 99999988888887654
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.9e-25 Score=210.75 Aligned_cols=221 Identities=19% Similarity=0.169 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (676)
..++...|..++..|++-.|...|+.++.++|.+...|..++.+|...++.++..+.|.++..++|.++++|+..|.+++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (676)
-++++++|+.-|++++.++|++..++..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++.|
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCC------CHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808 609 SSGLGIDPS------NIECLYLRASCYH-AIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD 669 (676)
Q Consensus 609 ~~al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 669 (676)
++++.+.|. ++..+.+.|.+.. -.+++..|...+++|++++|.+..++..++....|....
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 999999998 6666666555432 358999999999999999999999999999888776543
No 22
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.94 E-value=7.3e-24 Score=194.76 Aligned_cols=332 Identities=16% Similarity=0.213 Sum_probs=270.1
Q ss_pred hhhhhhhHHHHH-HHHHH-HHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhH
Q 005808 29 VDSVMASAITAR-IELAK-LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105 (676)
Q Consensus 29 ~~~~~~~~~~~~-~~~~~-~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a 105 (676)
.+|....+.-++ .++.+ ++..|+|.+|+..|-.||+.+ .+...++.||.+|+.+|+-.-|+.|+.++|++.|+...|
T Consensus 29 a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A 108 (504)
T KOG0624|consen 29 AESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA 108 (504)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH
Confidence 344444444555 55554 678999999999999999999 677779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCC
Q 005808 106 YILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKM 185 (676)
Q Consensus 106 ~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (676)
...+|.+++++|++++|...|.+.|..+|++......- ..+
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq-----------skl---------------------------- 149 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ-----------SKL---------------------------- 149 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH-----------HHH----------------------------
Confidence 99999999999999999999999966555432110000 000
Q ss_pred ccccccCCCCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCccc
Q 005808 186 SETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTH 265 (676)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (676)
T Consensus 150 -------------------------------------------------------------------------------- 149 (504)
T KOG0624|consen 150 -------------------------------------------------------------------------------- 149 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhcccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhh
Q 005808 266 ASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESR 345 (676)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (676)
T Consensus 150 -------------------------------------------------------------------------------- 149 (504)
T KOG0624|consen 150 -------------------------------------------------------------------------------- 149 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHhhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808 346 SKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR 425 (676)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 425 (676)
+.+ .....+......++..|++..|+.....+++..|-++..+...+.||
T Consensus 150 ~~~------------------------------~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 150 ALI------------------------------QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred HhH------------------------------HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 000 00223445566777889999999999999999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH------------HHHHH
Q 005808 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE------------RGIVN 493 (676)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~ 493 (676)
...|....|+..+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++..++-. -+.-.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987543322 13345
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Q 005808 494 FKFKDFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (676)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 569 (676)
...++|.+++...++.++.+|..+. ....+..|+..-+++.+|+..+.++++.+|++..++...+.+|+....|+.
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 6678899999999999998888543 344577888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcCcHHHHH
Q 005808 570 ALECLQQVLYIDKRFSKAYH 589 (676)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~ 589 (676)
|+..|+++.+.++++..+.-
T Consensus 360 AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 360 AIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHhcCcccHHHHH
Confidence 99999999999888765543
No 23
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=4.7e-24 Score=202.76 Aligned_cols=285 Identities=15% Similarity=0.174 Sum_probs=256.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQ--RELEAAISDFTEAIQSNPSAGEAWK 453 (676)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~ 453 (676)
.+...+.-+..+-.++.+|+++.|++++.-.-+.+.... .+-.++..+++.+ .++..|..+...++..+.-++.++.
T Consensus 415 ~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~ 494 (840)
T KOG2003|consen 415 AELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT 494 (840)
T ss_pred hhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh
Confidence 344566677889999999999999999987665554432 3345555555554 4788999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH
Q 005808 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533 (676)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 533 (676)
+.|.+.+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|..+.+.
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 99999999999999999999999999889999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (676)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (676)
.+|++++-++..+-|+++.++..+|.+|-+.|+..+|.+++-......|.+.+..-.+|..|....-+++|+.+|+++.-
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661 (676)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 661 (676)
+.|+........+.|+.+.|+|.+|...|+..-...|.+.+....+..
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 999988888899999999999999999999999999999887555443
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.9e-25 Score=222.39 Aligned_cols=285 Identities=21% Similarity=0.227 Sum_probs=263.7
Q ss_pred HHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 383 FRLSRGI--AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 383 ~~~~~a~--~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
.+..+|. ....+-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-...|-..+..-....++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 3444444 44455677899999999778888889999999999999999999999999999999987777767777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (676)
.+.+--+--.+.+..+..+|..|+.|..+|.+|..+++++.|+++|+++++++|....+|..+|.=+.....++.|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 77776666667778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (676)
Q Consensus 541 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (676)
+.++..+|.+-.+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
..+..|.++..++++++|+..+++..++-|++..+++.++.+|-++.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999887654
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=9.7e-24 Score=219.88 Aligned_cols=279 Identities=18% Similarity=0.092 Sum_probs=253.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRR 455 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l 455 (676)
.....+..|..+...|++++|+..|.++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 356677789999999999999999999999999999999999999999999999999999998854332 3568889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSI 530 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~ 530 (676)
|.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999887653 2466789999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLS 609 (676)
Q Consensus 531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 609 (676)
|++++|+.+++++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|+..++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988865 4667889999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (676)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (676)
++++..|+.. .+..++.++...|++++|...++++++..|++......+
T Consensus 274 ~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 274 RALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999999865 448999999999999999999999999999987655333
No 26
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.93 E-value=7.8e-23 Score=188.04 Aligned_cols=241 Identities=21% Similarity=0.278 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EA------------LIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (676)
+...+|.+++.+|.+++|...|+.+++.+|++. ++ +......++..|+...|+.+....+++.|.
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W 187 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW 187 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc
Confidence 445667888999999999999999999999652 22 223344455567888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH----
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL---- 523 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l---- 523 (676)
+...+...+.+|...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....+-..
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLK 267 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888765433211
Q ss_pred --------HHHHHHcccHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q 005808 524 --------GLALSSIGEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591 (676)
Q Consensus 524 --------a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 591 (676)
+......++|.++++..++.++.+|..+. ....+..++..-|++.+|+..+.++++.+|++..++...
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 11222334444444444444444444221 222233344444444444444444444444444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
|.+|+....|+.|+..|+++.+.++++..+..
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 44444444444444444444444444444333
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.6e-23 Score=194.97 Aligned_cols=282 Identities=18% Similarity=0.169 Sum_probs=258.7
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (676)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 455 (676)
.-|.+...-...|.+.+.+.++++|+..|+.+.+.+|-..+-.-....+++-..+-.+-.-..+.+..++.-.++....+
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 36677778888899999999999999999999999998877777778888777766665556667777888788888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 535 (676)
|..|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|+++++++|.+-.+|+.+|..|..++...=
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--
Q 005808 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG-- 613 (676)
Q Consensus 536 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 613 (676)
|+-+|+++....|+++..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.+.++.++|..+|++.++
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888889999999999999999999999999987
Q ss_pred -----CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 614 -----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 614 -----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
..|....+...|+.-+.+.+++++|..+..+++.-++...++..
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~ 545 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA 545 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence 45656678888999999999999999999999998777666543
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.6e-22 Score=209.13 Aligned_cols=230 Identities=18% Similarity=0.098 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-----HHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-----AWKRRG 456 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~la 456 (676)
..+..+|..+...|++++|+..|.++++..|.+..++..++.++...|++++|+..+.+++...|.+.. .+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 466788999999999999999999999988888899999999999999999999999999888776532 345566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHH
Q 005808 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKK 535 (676)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~ 535 (676)
.++...|++++|+..|+++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 677777777777777777777777766777777777777777777777777777666554 2345556666666666666
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH--cCCHHHHHHHHHHhh
Q 005808 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGL 612 (676)
Q Consensus 536 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 612 (676)
|+..++++++..|+... +..++.++...|++++|+..++++++..|++......++..+.. .|+..+|+..+++.+
T Consensus 268 A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 268 GLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 66666666666665433 35566666666666666666666666666555433333322211 335555555555443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=6.1e-21 Score=208.28 Aligned_cols=441 Identities=10% Similarity=-0.004 Sum_probs=320.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcccCChh-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH--HHHH
Q 005808 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK--GCAF 113 (676)
Q Consensus 37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~-~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~--g~~~ 113 (676)
...+.++--.+++|+|+.|+..|.++++.+|+.. ...-.+.++...|++++|+..|++++ +|.+...+..+ |.+|
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly 112 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAY 112 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHH
Confidence 4555666778999999999999999999997753 33377788889999999999999999 66555555555 7799
Q ss_pred HHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCC
Q 005808 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN 193 (676)
Q Consensus 114 ~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (676)
..+|++++|+..|+++++.+|+.+..+..+..+.-........+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl------------------------------------ 156 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL------------------------------------ 156 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH------------------------------------
Confidence 99999999999999999999988766643322221111100000
Q ss_pred CCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhh
Q 005808 194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273 (676)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (676)
..+.+
T Consensus 157 ---------------~~l~~------------------------------------------------------------ 161 (822)
T PRK14574 157 ---------------KQATE------------------------------------------------------------ 161 (822)
T ss_pred ---------------HHHHH------------------------------------------------------------
Confidence 00000
Q ss_pred cccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhH
Q 005808 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWD 353 (676)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (676)
.... .+.........+...+
T Consensus 162 ----------------------------------------------------------l~~~--dp~~~~~l~layL~~~ 181 (822)
T PRK14574 162 ----------------------------------------------------------LAER--DPTVQNYMTLSYLNRA 181 (822)
T ss_pred ----------------------------------------------------------hccc--CcchHHHHHHHHHHHh
Confidence 0000 0000000011111110
Q ss_pred hhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHH----
Q 005808 354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT--ARAF---- 427 (676)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~--~~~~---- 427 (676)
...... ....+.++....|.+.+.+..+...+...|-...|.+...+--.........++.... -..+
T Consensus 182 -----~~~~~~-AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 182 -----TDRNYD-ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred -----cchHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence 111111 3445666777788888888888888888888888887666533222111111111111 1111
Q ss_pred -----cc---cHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 005808 428 -----QR---ELEAAISDFTEAIQSN---PSA----GEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGI 491 (676)
Q Consensus 428 -----~g---~~~~A~~~~~~al~~~---~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 491 (676)
.+ -.+.|+..++..+... |.. ..+....-.++...|++.+++..|+.+.... |--..+....|.
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 11 2455777777777633 332 2234455667788899999999999887554 334557788999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc---------------cc
Q 005808 492 VNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------------NF 550 (676)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~ 550 (676)
.|+..+++++|+.+|+.++...| .+......|...+...+++++|..++++..+..| +.
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 99999999999999999988653 2333457788899999999999999999988544 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (676)
......++.++...|++.+|.+.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|++..+...+|.++.
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808 631 AIGEYREAIKDYDAALDLELDSMEKF 656 (676)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (676)
.+|++.+|......+++..|++....
T Consensus 496 ~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99999999999999999999998753
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=2.6e-20 Score=185.24 Aligned_cols=293 Identities=13% Similarity=0.093 Sum_probs=162.7
Q ss_pred hccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (676)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 453 (676)
++-.|..-..|...+..--..|..+.-..++++++...|.....|...+..+...|+...|...+.++++.+|++.++|+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 34444444444444444444455555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH
Q 005808 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533 (676)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 533 (676)
....+.....+++.|..+|.++....| ...+|+.-+.+...+++.++|+++++++++..|+....|..+|.++.+.++.
T Consensus 623 aavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence 555555555555555555555554443 2344455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (676)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (676)
+.|...|...++..|..+..|..++.+-...|..-.|...++++.-.+|.+...|.....+-.+.|+.+.|...+.+|++
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred CCC------------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808 614 IDP------------------------------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (676)
Q Consensus 614 ~~p------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (676)
..| .++.++...|.++....++++|..+|.++++.+|++.++|.....-+
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 333 23456666777777777777777777777777777777776655444
Q ss_pred HHhh
Q 005808 664 YQVL 667 (676)
Q Consensus 664 ~~~~ 667 (676)
.+..
T Consensus 862 l~hG 865 (913)
T KOG0495|consen 862 LRHG 865 (913)
T ss_pred HHhC
Confidence 4433
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-21 Score=185.80 Aligned_cols=281 Identities=16% Similarity=0.113 Sum_probs=251.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 463 (676)
+.++.++......++++.-+...... .|.+...-...|.+.+...+++.|+..|+...+.+|-..+-.-....+++-.+
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 44556666666889999999888887 88888888999999999999999999999999999987766666677776666
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (676)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (676)
+-.+---+...+..++.-.++....+|..|...++.++|+.+|+++++++|....+|..+|.=|..+.+...|+..|+.|
T Consensus 311 ~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 65555555666777887788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
++++|.+-.+|+.+|.+|.-++...=|+-+|+++....|.++..|..+|.||.+.++.++|+++|.+++.....+..++.
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHH
Q 005808 624 LRASCYHAIGEYREAIKDYDAALD-------LELDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~~~~~~~~ 665 (676)
.+|.+|.++++..+|..+|++.++ ..|+...+...++.-+++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 999999999999999999999998 455555665555555544
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-20 Score=184.52 Aligned_cols=254 Identities=17% Similarity=0.123 Sum_probs=234.9
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (676)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (676)
++++.....+..++..+++.+..+.++..++.+|-+..++.....++...|+..+-..+-.+.++..|..+..|+..|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 34678888999999999999999999999999998887766655599999999988888889999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q 005808 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (676)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 572 (676)
|...|++.+|.++|.++..++|....+|...|..+...|..++|+.+|..|-++.|........+|.-|.+.+++.-|..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC----CC---CHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID----PS---NIECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
.|.+++.+.|.+|..+..+|.+.+..+.|.+|..+|+.++..- +. ....+.+||.++.+++++++|+.+|+++
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998432 22 2356899999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHh
Q 005808 646 LDLELDSMEKFVLQCLAFYQV 666 (676)
Q Consensus 646 l~~~p~~~~~~~~~~~~~~~~ 666 (676)
+.+.|.+...+..+|.+|.-+
T Consensus 482 L~l~~k~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLL 502 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHh
Confidence 999999999999888887543
No 33
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.5e-20 Score=173.54 Aligned_cols=298 Identities=18% Similarity=0.127 Sum_probs=276.8
Q ss_pred hhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438 (676)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (676)
....+....++.......-+.+...+..+|.+++..|++.+|+..|+++...+|....+.-..|.++...|+++.-....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 55566677778788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 005808 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (676)
Q Consensus 439 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 518 (676)
...+........-|+.-+...+..+++..|+.+-+++++.+|++..++...|.++...|+.++|+-.|+.+..+.|...+
T Consensus 290 ~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 290 DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence 99998887788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFYQ-DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (676)
.|..+..+|...|.+.+|.-..+.+++..|.+..++..+| .++. .-.--++|.+.+++++.+.|....+-..+|.++.
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998886 4443 3344678999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
..|.++.++..+++.+...|+ ...+..||.++...+.+.+|+.+|..|+.++|++....-
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 999999999999999999988 578999999999999999999999999999999987643
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.90 E-value=1e-23 Score=207.90 Aligned_cols=264 Identities=20% Similarity=0.225 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
..+.+|..++..|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 4457799999999999999999766544 488899999999999999999999999999999999988888888888 7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE 538 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 538 (676)
..+++++|+.+++++.+..+ ++..+..+..++...++++++...++++.... +.++..|..+|.++...|+.++|+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988764 56777888889999999999999999987655 6778899999999999999999999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (676)
.++++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++...|++++|+.+|+++++.+|++
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 619 IECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
+.++..+|.++...|++++|..+++++++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998763
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=3.5e-20 Score=191.73 Aligned_cols=272 Identities=16% Similarity=0.143 Sum_probs=222.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAW 452 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~ 452 (676)
|.+.+.|..++.....+|++.+|+-+|.++++.+|.+....+..+.++.+.|+...|+..|.+++...|.. .+..
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i 283 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI 283 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 34467888999999999999999999999999999999999999999999999999999999999999832 1233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC-------------
Q 005808 453 KRRGQARAALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKE------------- 515 (676)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~------------- 515 (676)
...+..+...++-+.|++.++.++... ....+.+..++.+++....++.|.......... .++
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 445777888888899999999998832 233456778899999999999999888776551 011
Q ss_pred -------------CHHH-HHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 516 -------------NKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (676)
Q Consensus 516 -------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (676)
+..+ ...++.+....+...+++..+..--...|. .+..+..++.++...|++.+|+.++..+...
T Consensus 364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred ccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 1122 455566666666666666665443333343 4788999999999999999999999999877
Q ss_pred Cc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 581 DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 581 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
.+ ++..+|+.+|.||..+|.+++|++.|++++...|++.++...|+.++.++|+.++|.+.++....-+
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 66 4567899999999999999999999999999999999999999999999999999999999877333
No 36
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=1.8e-19 Score=196.79 Aligned_cols=298 Identities=15% Similarity=0.014 Sum_probs=241.6
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (676)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (676)
..+..+...+|.++..++.++..+...++.++|+..++++...+|.+... ..++.++...++..+|+..++++++.+|+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 35667788899999999999999999999999999999999999985554 55666666677787799999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHH------------------------------------------------HHHHHhcC
Q 005808 448 AGEAWKRRGQARAALGESVEAIQD------------------------------------------------LSKALEFE 479 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~------------------------------------------------~~~al~~~ 479 (676)
+.+++..+..++...|-...|.+. ++..+...
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 999988888777766654444433 33333322
Q ss_pred ---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc---
Q 005808 480 ---PNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR--- 548 (676)
Q Consensus 480 ---p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--- 548 (676)
|.. ..+....-.++...|++.++++.|+.+.... |-...+....|..|...++.++|+.+|.+++...|
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 221 1123344455677889999999999876554 33456778899999999999999999999988653
Q ss_pred ---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 549 ---NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---------------RFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (676)
Q Consensus 549 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (676)
........|...|...+++++|..++++.....| +.......++.++...|++.+|.+.+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2344457788999999999999999999987444 2346778899999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV 666 (676)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 666 (676)
.+...|.|+.++..+|.++...|++.+|...++.+..++|++..+...++.+....
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999888877776543
No 37
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.2e-20 Score=181.89 Aligned_cols=283 Identities=22% Similarity=0.243 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc------------------------HHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE------------------------LEAAIS 436 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~ 436 (676)
+..|..+|..++..|+|++|+..|.+.++.+|++...+..++.++..... .+.+..
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence 55667778888888888999888888888888888777777766622100 001111
Q ss_pred HHHHHHHhCCCc--------------------------------------------------------------HHHHHH
Q 005808 437 DFTEAIQSNPSA--------------------------------------------------------------GEAWKR 454 (676)
Q Consensus 437 ~~~~al~~~~~~--------------------------------------------------------------~~~~~~ 454 (676)
.....+..+|.+ ......
T Consensus 150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 111111111100 113456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHH
Q 005808 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-------SAYTYLGLAL 527 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~ 527 (676)
+|.......++..|++.+..++.++ .+...+.+.+-+|+..|.+.+.+.....+++...... .+...+|..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 7888888889999999999999999 8888889999999999999999998888887654432 2333456677
Q ss_pred HHcccHHHHHHHHHHHHhcCcc--------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808 528 SSIGEYKKAEEAHLKAIQLDRN--------------------------FLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (676)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 581 (676)
...++++.|+.+|.+++..... -..--..-|..++..|+|..|+..|.+++..+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 7888999999999988764322 22233456888999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661 (676)
Q Consensus 582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 661 (676)
|+++..|.++|.||.++|.+..|+...+.+++++|+....|+..|.++..+.+|++|++.|+++++.+|++.++......
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887555544
Q ss_pred HHH
Q 005808 662 AFY 664 (676)
Q Consensus 662 ~~~ 664 (676)
+..
T Consensus 469 c~~ 471 (539)
T KOG0548|consen 469 CVE 471 (539)
T ss_pred HHH
Confidence 443
No 38
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.9e-21 Score=181.63 Aligned_cols=289 Identities=20% Similarity=0.236 Sum_probs=235.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005808 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (676)
Q Consensus 35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 113 (676)
.+++...+++.++++.+|..|+..|+.||+.+ .+..+|.|||.++..+|+|++|+.+++..+.++|+.++++.+.|.++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 34556678888999999999999999999999 66677999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCC
Q 005808 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN 193 (676)
Q Consensus 114 ~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (676)
.+++...+|...|+..- |. .+.+.+ ...
T Consensus 128 ~a~~~~i~A~~~~~~~~-----------------~~--~~anal-----~~~---------------------------- 155 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQ-----------------AY--KAANAL-----PTL---------------------------- 155 (486)
T ss_pred hhhHHHHHHHHHhhhhh-----------------hh--HHhhhh-----hhh----------------------------
Confidence 99999999997776330 00 000001 000
Q ss_pred CCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhh
Q 005808 194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273 (676)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (676)
. ...
T Consensus 156 --------------------------------------~---~~~----------------------------------- 159 (486)
T KOG0550|consen 156 --------------------------------------E---KLA----------------------------------- 159 (486)
T ss_pred --------------------------------------h---ccc-----------------------------------
Confidence 0 000
Q ss_pred cccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhH
Q 005808 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWD 353 (676)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (676)
.+
T Consensus 160 ------------------------------------------------------------------~s------------ 161 (486)
T KOG0550|consen 160 ------------------------------------------------------------------PS------------ 161 (486)
T ss_pred ------------------------------------------------------------------cc------------
Confidence 00
Q ss_pred hhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 005808 354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433 (676)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 433 (676)
....|.-..+.+..+.++...|++++|...--.++++++.+.++++..|.+++..++.+.
T Consensus 162 --------------------~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~k 221 (486)
T KOG0550|consen 162 --------------------HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADK 221 (486)
T ss_pred --------------------ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHH
Confidence 000011144566778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Q 005808 434 AISDFTEAIQSNPSAGE------------AWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFK 497 (676)
Q Consensus 434 A~~~~~~al~~~~~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~ 497 (676)
|+.+|++++.++|+... .+..-|.-.++.|++..|.+.|..++.++|.+ ...|.+.+.+....|
T Consensus 222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg 301 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG 301 (486)
T ss_pred HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence 99999999999998743 45667777888889999999999999988876 446788888888899
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Q 005808 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (676)
Q Consensus 498 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 549 (676)
+..+|+.....++.+++....++...|.|+..+++|++|++.|+++.+...+
T Consensus 302 rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 302 RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999998888888888899999999999999999988887554
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.2e-19 Score=172.88 Aligned_cols=241 Identities=22% Similarity=0.206 Sum_probs=231.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473 (676)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (676)
-.++.+|..+.+.++..+.-++.++.+.|.+.+..|++++|.+.|..++..+....++++++|..+..+|+.++|+++|-
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHH
Q 005808 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553 (676)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 553 (676)
+.-.+--++.++++.++.+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-...+..|.+.+.
T Consensus 549 klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 549 KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 99888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q 005808 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (676)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (676)
.-.+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|...|+..-...|.+.+.+..|.++.-.+|
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 99999999999999999999999999999988888899999999999999999999999999999999999998887777
Q ss_pred c
Q 005808 634 E 634 (676)
Q Consensus 634 ~ 634 (676)
-
T Consensus 709 l 709 (840)
T KOG2003|consen 709 L 709 (840)
T ss_pred c
Confidence 4
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=6.8e-19 Score=175.22 Aligned_cols=293 Identities=15% Similarity=0.061 Sum_probs=272.4
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (676)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (676)
-.+.+.....|.....|+..+..+...|+...|..++.++++.+|++.+.|+..-.+.....+++.|..+|.++....|
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg- 649 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG- 649 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-
Confidence 3556777888999999999999999999999999999999999999999999999999999999999999999988665
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (676)
...+|+.-+.+...+++.++|+.+++.+++..|.....|..+|+++.++++.+.|...|...++..|.....|..++.+-
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------------------------
Q 005808 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------------------------ 583 (676)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------------------ 583 (676)
...|+.-.|...++++.-.+|++...|.....+-.+.|+.+.|...+.++++..|+
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999887764
Q ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 584 ------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 584 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
++.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.+.++..-.|.+.+.|.
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~ 889 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ 889 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence 34557778999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHH
Q 005808 658 LQCL 661 (676)
Q Consensus 658 ~~~~ 661 (676)
....
T Consensus 890 avSK 893 (913)
T KOG0495|consen 890 AVSK 893 (913)
T ss_pred HHhh
Confidence 5543
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=5.4e-20 Score=197.84 Aligned_cols=265 Identities=14% Similarity=0.001 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCCCcHH
Q 005808 383 FRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPSAGE 450 (676)
Q Consensus 383 ~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~ 450 (676)
.++..|..++.. +++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 466677655543 4578999999999999999999999999887744 3489999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005808 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (676)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 530 (676)
++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777777778889
Q ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 531 GEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (676)
Q Consensus 531 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (676)
|++++|+..+++++... |+++..+..+|.++...|++++|...+.++....|....+...++..+...|+ +|...++
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~ 497 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR 497 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence 99999999999999875 77899999999999999999999999999988888888889999999998884 7777777
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
..++.....+........+|.-.|+.+.+..+ +++.+.+.
T Consensus 498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 76664433333334488888889999988887 77766543
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=2e-19 Score=183.14 Aligned_cols=290 Identities=16% Similarity=0.126 Sum_probs=248.4
Q ss_pred hhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808 365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (676)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (676)
..-..+.+..+.+|.++.+.+.++..|..+++.+.|+...+++++. ..+++.+|..++.++...+++.+|+...+.++.
T Consensus 462 kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3345667778889999999999999999999999999999999999 556799999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHh--
Q 005808 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---------ILHERGIVNFKFKDFNAAVEDLSACVKL-- 512 (676)
Q Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~-- 512 (676)
..|+|.........+-...++.++|+..+...+........ .....+......++..+|++..+.+...
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 99998877777777778889999999998887766442222 2222233334445566666666555432
Q ss_pred -------------------CCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q 005808 513 -------------------DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (676)
Q Consensus 513 -------------------~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 568 (676)
.|.. ...|...+..+...+..++|..++.++-.+.|..+..|+..|.++...|+..
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhH
Confidence 1111 2467778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH--HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005808 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK--DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (676)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (676)
+|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++.+|.++++|+.+|.++.+.|+.++|.++|..++
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888 9999999999999999999999999999999999999999
Q ss_pred hhCCCcHH
Q 005808 647 DLELDSME 654 (676)
Q Consensus 647 ~~~p~~~~ 654 (676)
++.+.+|-
T Consensus 782 qLe~S~PV 789 (799)
T KOG4162|consen 782 QLEESNPV 789 (799)
T ss_pred hhccCCCc
Confidence 99988764
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=2e-19 Score=186.25 Aligned_cols=288 Identities=23% Similarity=0.259 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
...++..|..++..|++++|..++.++++.+|.++.+|+.+|.+|..+|+.+++...+-.|-.++|++.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcccHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKK 535 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~ 535 (676)
.+|++.+|.-+|.++++.+|.+....+..+.+|.++|+...|...+.+++...|... ......+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999998321 222334666677777788
Q ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------------
Q 005808 536 AEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLY---------------------------------- 579 (676)
Q Consensus 536 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------------------------- 579 (676)
|++.+..++... ......+..++.+++....++.|...+.....
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 888888777622 22233445555666666666665554443322
Q ss_pred -----------------------------cCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-CHHHHHHHHHH
Q 005808 580 -----------------------------IDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-NIECLYLRASC 628 (676)
Q Consensus 580 -----------------------------~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 628 (676)
..| +++..+..++.++...|++.+|+.+|..+....+. +..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 111 34567889999999999999999999999987654 46899999999
Q ss_pred HHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 005808 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLF 668 (676)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 668 (676)
|..+|.+++|+.+|++++.+.|++.++...++.++.+...
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence 9999999999999999999999999999999999887654
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1e-19 Score=166.60 Aligned_cols=239 Identities=13% Similarity=0.063 Sum_probs=136.0
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005808 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (676)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (676)
..+|.||+..|-+.+|.+.++.++...| .++.+..++.+|....+...|+..+...++..|.+...+..++.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3455555555555555555555555443 344455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (676)
Q Consensus 499 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 578 (676)
+++|.++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++.++..-.+++.+.++|.+.+..++++-++..|.+++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCc---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 579 YIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 579 ~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
.... .-.++|+++|.+....|++..|...|+-++..++++.+++.+||.+-.+.|+.++|..++..+-...|+-.+.
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 4322 2235556666665566666666666666666566555666666666666666666666666655555555444
Q ss_pred HHH
Q 005808 656 FVL 658 (676)
Q Consensus 656 ~~~ 658 (676)
.++
T Consensus 466 ~~N 468 (478)
T KOG1129|consen 466 TTN 468 (478)
T ss_pred ccc
Confidence 433
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=3.9e-19 Score=191.25 Aligned_cols=228 Identities=15% Similarity=0.112 Sum_probs=204.1
Q ss_pred HHHHHHHHHH---cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHH
Q 005808 418 LIGRGTARAF---QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADI 485 (676)
Q Consensus 418 ~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 485 (676)
++..|..... .+.+++|+..|+++++++|++..++..+|.++... +++++|+..++++++.+|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 3444544433 24678999999999999999999999999887644 34899999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (676)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 565 (676)
+..+|.++...|++++|+..++++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777777788899
Q ss_pred CHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808 566 NSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (676)
Q Consensus 566 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (676)
++++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|....++..++..|...|+ +|...+++
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ 498 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIRE 498 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 9999999999999775 78889999999999999999999999999999999988999999999999885 66666666
Q ss_pred HHh
Q 005808 645 ALD 647 (676)
Q Consensus 645 al~ 647 (676)
.++
T Consensus 499 ll~ 501 (553)
T PRK12370 499 FLE 501 (553)
T ss_pred HHH
Confidence 555
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=3.3e-18 Score=177.37 Aligned_cols=285 Identities=15% Similarity=0.056 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQAR 459 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~la~~~ 459 (676)
....+..|...+..|+++.|.+.+.++.+..|+....+...|.+....|+++.|..++.++.+..|++. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445577888888999999999999999888888888888889999999999999999999988888875 4666678999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcccHHH
Q 005808 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----YLGLALSSIGEYKK 535 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~la~~~~~~g~~~~ 535 (676)
...|+++.|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-....+..++
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999888877544443221 11222234444455
Q ss_pred HHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH--HHHHHHHHHcCCHHHHHHHHH
Q 005808 536 AEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY--HLRGLLLHGLGQHKKAIKDLS 609 (676)
Q Consensus 536 A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~ 609 (676)
+...+..+....| +++..+..++..+...|++++|...++++++..|++.... ..........++...+++.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 5667777777666 4788888888888888888888888888888888776431 223333344577888888888
Q ss_pred HhhcCCCCCH--HHHHHHHHHHHHhccHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHh
Q 005808 610 SGLGIDPSNI--ECLYLRASCYHAIGEYREAIKDYD--AALDLELDSMEKFVLQCLAFYQV 666 (676)
Q Consensus 610 ~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~ 666 (676)
++++..|+++ ..+..+|.++.+.|++++|.++|+ .+++..|++.. +..++.++.+.
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~ 383 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQA 383 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHc
Confidence 8888888888 778888888888888888888888 57778887766 34666665543
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=4.8e-21 Score=188.91 Aligned_cols=256 Identities=21% Similarity=0.213 Sum_probs=123.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 005808 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486 (676)
Q Consensus 409 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 486 (676)
+..|. . ..+.+|.+++..|++++|++.+.+.+.. .|++...|..+|.+....++++.|+..|++++..++.++..+
T Consensus 4 ~~~~~-~-~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 4 EFGPS-E-EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34555 2 3346799999999999999999766544 488899999999999999999999999999999999988888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHc
Q 005808 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDL 564 (676)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 564 (676)
..++.+ ...+++++|+..++++.+..+ ++..+.....++...++++++...++++.... +.++..|..+|.++.+.
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred cccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 888888 799999999999999987664 56677778888999999999999999977654 67889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (676)
Q Consensus 565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (676)
|+.++|+..++++++.+|+++.+...+++++...|+++++...+....+..|+++..+..+|.++..+|++++|+.+|++
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999999999999999999999999999999999999998888888899999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhhh
Q 005808 645 ALDLELDSMEKFVLQCLAFYQVLF 668 (676)
Q Consensus 645 al~~~p~~~~~~~~~~~~~~~~~~ 668 (676)
+++.+|+++.....++.++.+...
T Consensus 240 ~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 240 ALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHSTT-HHHHHHHHHHHT----
T ss_pred cccccccccccccccccccccccc
Confidence 999999999999988888776543
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1e-19 Score=166.68 Aligned_cols=243 Identities=14% Similarity=0.121 Sum_probs=231.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 464 (676)
..+|.||++.|-+.+|.+.++..++..|. ++.+..++.+|....+...|+..+...++..|.+...+...++++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 47899999999999999999999998876 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (676)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (676)
+++|.++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|++.++..-.+++.+.++|.|++..++++-++..|++++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 005808 545 QLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (676)
Q Consensus 545 ~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 621 (676)
....+ -.++|+++|.+....|++..|..+|+-++..++++..++.++|.+-.+.|+.++|..++..+-...|+-.+.
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 87543 378999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred HHHHHHH
Q 005808 622 LYLRASC 628 (676)
Q Consensus 622 ~~~la~~ 628 (676)
.++++.+
T Consensus 466 ~~Nl~~~ 472 (478)
T KOG1129|consen 466 TTNLQFM 472 (478)
T ss_pred ccceeEE
Confidence 7776654
No 49
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=8e-20 Score=180.64 Aligned_cols=256 Identities=18% Similarity=0.208 Sum_probs=197.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 463 (676)
-+..|..++..|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHH
Q 005808 464 ESVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYK 534 (676)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~ 534 (676)
.-.+|+.++.+.+...|........ ...-......+..-.+.|-.+....| .++++...||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999999988877644321110 00001111223344555666666666 67788888888888888888
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
+|+.+|+.++...|++...|+.||-.+....+..+|+..|.+|+++.|....+++++|..++.+|.|.+|+++|-.++.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888876
Q ss_pred CCC----------CHHHHHHHHHHHHHhccHHHHH
Q 005808 615 DPS----------NIECLYLRASCYHAIGEYREAI 639 (676)
Q Consensus 615 ~p~----------~~~~~~~la~~~~~~g~~~~A~ 639 (676)
.+. +..+|-.|-.++..+++.+-+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 443 1246666666666666665443
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=4.2e-18 Score=176.61 Aligned_cols=277 Identities=14% Similarity=0.027 Sum_probs=234.1
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 005808 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (676)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (676)
....+..|.....++..|..+...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++...+..|+++
T Consensus 108 ~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~ 187 (409)
T TIGR00540 108 AKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK 187 (409)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 344555677777888999999999999999999999999999875 4666679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhCC----CCHHHHH
Q 005808 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH----ERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAYT 521 (676)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~ 521 (676)
.++..++.++...|++++|...+.+..+....++..+. ....-+...+..+.+...+..+....| +++..+.
T Consensus 188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~ 267 (409)
T TIGR00540 188 EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKI 267 (409)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHH
Confidence 99999999999999999999999999987554444321 222222444555556678888888777 5899999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH--HHHHHHHHHHHH
Q 005808 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRGLLLHG 597 (676)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~ 597 (676)
.++..+...|++++|...++++++..|++.... ..........++...+++.++++++..|+++ .....+|+++.+
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK 347 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 999999999999999999999999999987532 2333334446888999999999999999999 889999999999
Q ss_pred cCCHHHHHHHHH--HhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 598 LGQHKKAIKDLS--SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 598 ~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
.|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 348 ~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 348 HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999 67888888544 669999999999999999999998763
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.84 E-value=1.1e-18 Score=172.03 Aligned_cols=232 Identities=17% Similarity=0.157 Sum_probs=150.6
Q ss_pred CCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808 395 GKYASAISIFDQILKEDP---M-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (676)
Q Consensus 395 g~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (676)
+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|.++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456677777777775333 2 256677778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Q 005808 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (676)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 550 (676)
.|+++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 8888888888777777778888777788888888888888777777632211 123344567777777776655433221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCHHHH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVL-------YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIECL 622 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 622 (676)
.|. .+.++...|+...+ ..+..+. +..|....+|+.+|.++...|++++|+.+|++++..+| +.++..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 23444445554332 1222222 33444556677777777777777777777777777664 445555
Q ss_pred HHHHHHHHH
Q 005808 623 YLRASCYHA 631 (676)
Q Consensus 623 ~~la~~~~~ 631 (676)
+.+..+...
T Consensus 275 ~~~~e~~~~ 283 (296)
T PRK11189 275 YALLELALL 283 (296)
T ss_pred HHHHHHHHH
Confidence 555444444
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=1.4e-17 Score=171.60 Aligned_cols=262 Identities=14% Similarity=0.100 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHH
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-AWKRRGQARAA 461 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~ 461 (676)
..+..|...+..|+|+.|.+.+.+..+..+.....+...+.+....|+++.|..++.++.+.+|++.. .....+.++..
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34455555555666666665555543332221222222244446666666666666666665555532 22233556666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------
Q 005808 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD---------------------------- 513 (676)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------------- 513 (676)
.|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+..
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 6666666666666666666666666666666666666666665555544433
Q ss_pred --------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 514 --------------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (676)
Q Consensus 514 --------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 579 (676)
|+++.+...++..+...|+.++|...++++++. +.++......+.+ ..++.+++++.+++.++
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHh
Confidence 334445555555555556666666655555553 2233332222222 23555555555555555
Q ss_pred cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
..|+++..+..+|.++...|++++|..+|+++++..|++ ..+..++.++.++|+.++|..+|++++.+
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556555555566666666666666666666666555552 33445555666666666666666555543
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=2.7e-18 Score=169.39 Aligned_cols=224 Identities=23% Similarity=0.255 Sum_probs=183.4
Q ss_pred cccHHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005808 428 QRELEAAISDFTEAIQSNP---S-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503 (676)
Q Consensus 428 ~g~~~~A~~~~~~al~~~~---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 503 (676)
.+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4577889999999996444 2 36789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (676)
Q Consensus 504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 583 (676)
..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999998742222 22345578999999999887654332
Q ss_pred cHHHHHHHHHHHHHcCCHHHH--HHHHHHhh----cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CcHHH
Q 005808 584 FSKAYHLRGLLLHGLGQHKKA--IKDLSSGL----GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSMEK 655 (676)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A--~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 655 (676)
.. |. .+.+....|+..++ +..+.+.+ +..|...++|+.+|.++...|++++|+.+|+++++.+| +..+.
T Consensus 198 ~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 198 EQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred cc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 22 22 34555556665443 33333332 44556678999999999999999999999999999997 44444
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2e-19 Score=177.84 Aligned_cols=233 Identities=18% Similarity=0.249 Sum_probs=208.3
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005808 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (676)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (676)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHH
Q 005808 499 FNAAVEDLSACVKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEK 569 (676)
Q Consensus 499 ~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~ 569 (676)
-.+|+..+.+-+...|........ ...-......+..-.+.|-.+....| .++.+...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887654321110 00011112234455667777777777 689999999999999999999
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
|+.+|+.++...|++...|..+|-.+....+.++|+..|.+|+++.|...++++++|.+++.+|.|++|.++|-.||.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 005808 650 LD 651 (676)
Q Consensus 650 p~ 651 (676)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 66
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.5e-19 Score=167.24 Aligned_cols=271 Identities=26% Similarity=0.307 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
+.-....|..++...+|.+|+..+..+++..|+++..|...+.+++..|++++|....++.+.+.|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHH---------------hcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005808 461 ALGESVEAIQDLSKAL---------------EFE---PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al---------------~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 522 (676)
..++..+|...++..- ..+ |....+-...+.++...|++++|...--..+++++.+.++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 9888888776655211 111 2223345567889999999999999999999999999999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhcCccc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc----HH
Q 005808 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SK 586 (676)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~ 586 (676)
.|.++...++.+.|+..|++++.++|++ ...+..-|.-.++.|++..|.++|..++.++|++ ..
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 9999999999999999999999999986 3456778888999999999999999999999965 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
.|.++|.+...+|+..+|+...+.+++++|....++...|.|+..+++|++|.+.|+++++...+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 78999999999999999999999999999999999999999999999999999999999998776
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=4.6e-18 Score=149.34 Aligned_cols=206 Identities=19% Similarity=0.104 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005808 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (676)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 529 (676)
.+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808 530 IGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (676)
Q Consensus 530 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (676)
+|++++|...|++++.. .+.....+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|+|..|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 77777777777777763 2344677778888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
+++.....+-..+.+.....+-...|+.+.|..+=.+.....|...+.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 888777777667777777777788888888888777777778877663
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=6.8e-18 Score=148.30 Aligned_cols=207 Identities=22% Similarity=0.213 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
..+.+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (676)
.+|++++|...|++++.. .+.....+.++|.|..+.|+++.|..+|++++..+|+.+.....++..++..|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999998864 345577888899999999999999999999999999888888888999999999999988
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH
Q 005808 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (676)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 587 (676)
+++......+-....+.....+-...|+-+.+-.+=.+.-...|.....
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888777777777777778888888888888777777777766543
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=8.8e-18 Score=161.65 Aligned_cols=202 Identities=18% Similarity=0.134 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (676)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+...+..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34555555666666666666666666665556555566666666666666666666666666666666666666666666
Q ss_pred HcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (676)
..|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|.++..+..+|.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665532 33455666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
.+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 77777777666677777777777777777777777766655443
No 59
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=1.3e-16 Score=177.80 Aligned_cols=85 Identities=12% Similarity=0.002 Sum_probs=66.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHccc---CChhHHHHHHHHHHHhhCHHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCC
Q 005808 44 AKLCSLRNWSKAIRILDSLLAQS---YEIQDICNRAFCYSQLELHKHVIRDCDKALQ--LDPTLLQAYILKGCAFSALGR 118 (676)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~---~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~l~~ 118 (676)
..+...|++++|+..|....... ++...|.....++.+.|+++.|...+...+. ..|+ +..+..+..+|.+.|+
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHhcCCC
Confidence 44567889999999998876542 5667788888888888998888888777765 3454 6678888889999999
Q ss_pred HHHHHHHHHHH
Q 005808 119 KEEALSVWEKG 129 (676)
Q Consensus 119 ~~~A~~~~~~a 129 (676)
+++|.+.|++.
T Consensus 174 ~~~A~~lf~~m 184 (697)
T PLN03081 174 LIDARRLFDEM 184 (697)
T ss_pred HHHHHHHHhcC
Confidence 99999888877
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=1.4e-17 Score=160.26 Aligned_cols=201 Identities=21% Similarity=0.241 Sum_probs=149.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 459 (676)
.+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36677788888888888888888888888888888888888888888888888888888888888888877888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808 460 AALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (676)
...|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|++...+..+|.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888877643 3445566667777777777777777777777777776666777777777777777777
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (676)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (676)
.++++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777776666666666666666666667777766666555443
No 61
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=3.1e-19 Score=163.47 Aligned_cols=108 Identities=29% Similarity=0.400 Sum_probs=100.8
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005808 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110 (676)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 110 (676)
.-..++.-+.+++++++.++|.+|+..|++||+++ .|+.+|||||.+|.++|.|+.|+++|++||.+||++.++|.|+|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44566777799999999999999999999999999 88888999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 005808 111 CAFSALGRKEEALSVWEKGYEHALHQSAD 139 (676)
Q Consensus 111 ~~~~~l~~~~~A~~~~~~al~~~~~~~~~ 139 (676)
.+|..+|++++|+.+|++||+++|+....
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHH
Confidence 99999999999999999998888887633
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.5e-16 Score=146.15 Aligned_cols=272 Identities=17% Similarity=0.145 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHH
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQ 457 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~la~ 457 (676)
--|..|..++-..+.++|+..|..+++.+|...++.+.+|.++...|..+.|+..-+..+. .|+. ..+...+|.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 3456788888899999999999999999999999999999999999999999998776655 4543 347788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccc
Q 005808 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGE 532 (676)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~ 532 (676)
-|+..|-++.|...|....+....-..++..+..+|....+|++|++..++..++.+... ..+..++..+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999887766778999999999999999999999999999987653 456778888888999
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (676)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (676)
.+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +.+.-.+..+|.+.|+.++.+..+.++
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 567888999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (676)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (676)
.+..+. +.+-..++..-....-.+.|..++.+-+...|+-...+
T Consensus 276 ~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 276 METNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred HHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 998887 56777778877777778889999999999999765543
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.81 E-value=4.7e-17 Score=169.52 Aligned_cols=208 Identities=18% Similarity=0.118 Sum_probs=188.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (676)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (676)
.++...|...|-++++++|....++..+|.+|...-+...|.++|.++.++++.+..++-..+..|....+++.|.....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35588899999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 005808 542 KAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (676)
Q Consensus 542 ~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (676)
.+-+..|.. ...|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 777776654 456777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD 669 (676)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 669 (676)
...+..+.+...+|+|.+|+..+...+............++.++.+.+.+
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd 680 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD 680 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999988777666666677776665544
No 64
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.81 E-value=1.7e-17 Score=172.71 Aligned_cols=282 Identities=14% Similarity=0.116 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 462 (676)
.|..+|..+...+++..|+..|+.++..+|.+...|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 34446666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------C-CCCHHHHHHHHHHH
Q 005808 463 GESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKL-------D-KENKSAYTYLGLAL 527 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~-~~~~~~~~~la~~~ 527 (676)
|.|.+|+..+...+...... .+++...+..+...|-...|..++++.++. . -++...|..+|.++
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 77777777666665543322 233444444444444444444444444332 1 12222222222211
Q ss_pred HHcccH-----------------------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHH--------cCCHHHH
Q 005808 528 SSIGEY-----------------------------KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------LANSEKA 570 (676)
Q Consensus 528 ~~~g~~-----------------------------~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~~~~~~A 570 (676)
.-.-.. --+.+++-..+... .++..|+++|..|.+ +.+...|
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 110000 01111111111111 114455666655544 1223356
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
+.++.++++...++...|..+|.+ ...|++.-|.-.|-+.....|.....|.++|.++.+..+++-|...|.++..++|
T Consensus 803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP 881 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP 881 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence 666666666666666666666665 4446666666666666666666666666666666666666666666666666666
Q ss_pred CcHHHHHHHHHHHHHh
Q 005808 651 DSMEKFVLQCLAFYQV 666 (676)
Q Consensus 651 ~~~~~~~~~~~~~~~~ 666 (676)
.+...|...+++--..
T Consensus 882 ~nl~~WlG~Ali~eav 897 (1238)
T KOG1127|consen 882 LNLVQWLGEALIPEAV 897 (1238)
T ss_pred hhhHHHHHHHHhHHHH
Confidence 6666665555544433
No 65
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.81 E-value=8.8e-15 Score=164.88 Aligned_cols=267 Identities=14% Similarity=0.022 Sum_probs=198.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CCCcHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKR 454 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~ 454 (676)
+...|..+...|...|++++|+.+|..+.... ..+...|..+...+.+.|++++|...|.++... .| +...+..
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence 46677777778888888888888888876542 123667778888888888888888888887653 33 3456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Q 005808 455 RGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGE 532 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~ 532 (676)
+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|+..|.++.... ..+...+..+...+...|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 7778888888888888888887765 3456778888888888888888888888877652 2235677777888888888
Q ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 533 YKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (676)
Q Consensus 533 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (676)
+++|.+++..+.+.. +.+...+..+...|.+.|++++|...|++.... .| +...|..+...|.+.|++++|+++|+
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888887654 334677888888888888888888888877543 33 45678888888888888888888888
Q ss_pred HhhcC--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 610 SGLGI--DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 610 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
++... .|+ ...|..+...+.+.|++++|..++.++++..
T Consensus 744 eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 744 EMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 77643 344 5666677778888888888888888887643
No 66
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.80 E-value=4.3e-16 Score=173.76 Aligned_cols=266 Identities=10% Similarity=-0.042 Sum_probs=230.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRR 455 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l 455 (676)
+.+...|..+...|...|++++|+.+|+++.+.. .-+...+..+...+...|++++|...+..+++.. +.+..++..+
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 3457788899999999999999999999997643 2246788999999999999999999999999875 5567788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHH
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYK 534 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~ 534 (676)
...|.+.|++++|...|+++.+ .+...|..+...|.+.|+.++|++.|+++.... ..+...+..+...+...|..+
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 9999999999999999998754 356789999999999999999999999988753 234666788888999999999
Q ss_pred HHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808 535 KAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (676)
Q Consensus 535 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (676)
+|..+|+.+.+..+ .+...|..+...+.+.|+.++|.+.+++.- ..| +...|..+...+...|+++.|...+++.+
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99999999986432 235678889999999999999999988652 333 46779999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
+..|++...|..++.+|...|++++|.+.++...+.
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999988765
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.1e-15 Score=141.95 Aligned_cols=88 Identities=25% Similarity=0.198 Sum_probs=76.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccc--CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 005808 42 ELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (676)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~--~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~ 119 (676)
++..++.+++|..||..+.-....+ .....-.=.|.|++++|+|++|+..|+-+.+.+.-..+..+.++.+++=+|.|
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5788899999999999999888776 33334456789999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHH
Q 005808 120 EEALSVWEKG 129 (676)
Q Consensus 120 ~~A~~~~~~a 129 (676)
.+|...-.+|
T Consensus 108 ~eA~~~~~ka 117 (557)
T KOG3785|consen 108 IEAKSIAEKA 117 (557)
T ss_pred HHHHHHHhhC
Confidence 9999777777
No 68
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.80 E-value=9.7e-15 Score=164.54 Aligned_cols=233 Identities=17% Similarity=0.049 Sum_probs=196.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKR 454 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 454 (676)
+...+..+...+...|++++|..+|.++... .|+ ...+..+...|.+.|++++|...|+.+.+.+ +.+...|..
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 4667888888899999999999999998763 344 6788888889999999999999999998876 456778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Q 005808 455 RGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIG 531 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g 531 (676)
+...|.+.|++++|+.+|.++... .| +...|..+...+...|++++|.+++..+.+.. +.+...+..+...|.+.|
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999998876 34 46788889999999999999999999998764 445778899999999999
Q ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 532 EYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (676)
Q Consensus 532 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (676)
++++|...|+++.... ..+...|..+...|.+.|++++|+++|+++... .| +...|..+...+.+.|++++|..++
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999886542 234678999999999999999999999988754 34 4667777888999999999999999
Q ss_pred HHhhcCC
Q 005808 609 SSGLGID 615 (676)
Q Consensus 609 ~~al~~~ 615 (676)
..+.+..
T Consensus 778 ~~M~k~G 784 (1060)
T PLN03218 778 SQAKEDG 784 (1060)
T ss_pred HHHHHcC
Confidence 9998753
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=7.5e-16 Score=158.87 Aligned_cols=195 Identities=14% Similarity=0.072 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI--------GRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (676)
+.++..++..+...|++++|+..+.++.+..+.++.... .+........+-+.....++......|+++.++
T Consensus 187 ~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~ 266 (398)
T PRK10747 187 PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQ 266 (398)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHH
Confidence 344444455566666777777666666665544332211 111111111122222233333323334455556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (676)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (676)
..++..+...|+.++|...++++++. |.++.....++.+ ..++.+++++.+++.++.+|+++..+..+|.++...++
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 66666666666666666666666553 2244333333332 23555566666666666666666656666666666666
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (676)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 579 (676)
+++|..+|+++++..|++. .+..++.++...|+.++|..+|++++.
T Consensus 344 ~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 344 WQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666665555532 234555555566666666666655544
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-16 Score=150.50 Aligned_cols=234 Identities=17% Similarity=0.170 Sum_probs=124.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (676)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (676)
...|++++--.+-...+..+.....-|+.-+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 33444444444444444444444444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHH-HHcccHHHHHHHHHHHHhcCcc
Q 005808 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG-LAL-SSIGEYKKAEEAHLKAIQLDRN 549 (676)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~-~~~g~~~~A~~~~~~al~~~p~ 549 (676)
|+.+..+.|...+.|..+..+|...|++.+|.-....+++..|.+...+..+| .++ ..-.--++|.+.+++++.+.|.
T Consensus 357 FR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~ 436 (564)
T KOG1174|consen 357 FRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI 436 (564)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence 55555555555555555555555555555555555555555555555555443 222 2222334555555555555555
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 005808 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626 (676)
Q Consensus 550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 626 (676)
...+...++.++...|.+..++..+++.+...|+ ...+..+|.++...+.+++|+.+|..++.++|++......+-
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 5555555555555555555555555555555543 334555555555555555555555555555555554444443
No 71
>PLN03077 Protein ECB2; Provisional
Probab=99.79 E-value=2.3e-15 Score=172.08 Aligned_cols=277 Identities=11% Similarity=-0.003 Sum_probs=195.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 458 (676)
.+...+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|+..|+++....+.+...+..+...
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a 498 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSA 498 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 3456677778888888888888888887643 3456788888888888888888888888876544455566666667
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808 459 RAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (676)
+...|..+.+.+.+..+++... .+..+...+...|.+.|+.++|...|... +.+...|..+...|...|+.++|+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777765532 23445566677777778888887777764 455667777777777788888888
Q ss_pred HHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808 538 EAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (676)
Q Consensus 538 ~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (676)
..|+++.+. .|+ ...+..+...+.+.|..++|..+|+...+..+ .+...|..+..++.+.|++++|.+.+++. .
T Consensus 575 ~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~ 652 (857)
T PLN03077 575 ELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-P 652 (857)
T ss_pred HHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-C
Confidence 888777654 233 44455555667777778888777777763322 23466777777777788888887777775 2
Q ss_pred CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (676)
..|+ ..+|..+-..+...|+.+.|....+++++++|++...|..++..|..
T Consensus 653 ~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 653 ITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 4454 56666666677777777777777777777778777777777766654
No 72
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=7e-17 Score=158.33 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 005808 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF--NAAVEDLS 507 (676)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~ 507 (676)
.++|+..+.++++++|++..+|...+.++..+| ++++++..+++++..+|++..+|...+.++...|+. ++++.++.
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 334444444444444444444444444444444 334444444444444444444444444444444432 34444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhc
Q 005808 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANS----EKALECLQQVLYI 580 (676)
Q Consensus 508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~ 580 (676)
++++.+|++..+|..++.++...|+++++++++.++++.+|.+..+|...+.+.... |.+ ++++.+..+++..
T Consensus 133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212 (320)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence 445555555555555555554445555555555555555555555554444444333 111 3455555566666
Q ss_pred CcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc------------------cHHHH
Q 005808 581 DKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG------------------EYREA 638 (676)
Q Consensus 581 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------~~~~A 638 (676)
+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..|+.+|.... ..++|
T Consensus 213 ~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 292 (320)
T PLN02789 213 NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLA 292 (320)
T ss_pred CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHH
Confidence 66666666666555555 234455666666666666666666666666665422 33667
Q ss_pred HHHHHHHHhhCCCcHHHHH
Q 005808 639 IKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 639 ~~~~~~al~~~p~~~~~~~ 657 (676)
...++..-+.+|=-...|.
T Consensus 293 ~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 293 QAVCSELEVADPMRRNYWA 311 (320)
T ss_pred HHHHHHHHhhCcHHHHHHH
Confidence 7777777555664444443
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.78 E-value=4e-15 Score=152.15 Aligned_cols=272 Identities=20% Similarity=0.204 Sum_probs=230.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQARAALGESVEAIQDLSK 474 (676)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (676)
...++++.++++++.+|+|+.+.+.++.-|...++.+.|+.+..++++. ..++..+|..++.++...+++.+|+.+.+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999 456689999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH---------HHHHHHcccHHHHHHHHHHHHh
Q 005808 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL---------GLALSSIGEYKKAEEAHLKAIQ 545 (676)
Q Consensus 475 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~ 545 (676)
++...|+|.........+-...++.++|+..+...+........+...+ +......++..+|+...+++..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 9999999888777777888889999999999888877654332222222 2222233344445544444332
Q ss_pred c---------------------Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q 005808 546 L---------------------DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (676)
Q Consensus 546 ~---------------------~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (676)
. .|.. ...|...+..+...++.++|..++.++-.+.|..+..|+..|.++...|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 1 1111 3567788999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK--DYDAALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
+..+|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|+++|.++.+.+
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999988888 999999999999999999999886544
No 74
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=2.8e-16 Score=154.08 Aligned_cols=234 Identities=16% Similarity=0.131 Sum_probs=206.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH--H
Q 005808 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES--V 466 (676)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~--~ 466 (676)
++...+.+++|+..+.++++.+|.+..+|..++.++...| ++++++..+.+++..+|++..+|...+.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3566789999999999999999999999999999999998 689999999999999999999999999999999874 7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---ccH----HHHHHH
Q 005808 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEY----KKAEEA 539 (676)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~ 539 (676)
+++.++.++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|..++.+.... |.+ ++++.+
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999998776 333 578888
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC----------------
Q 005808 540 HLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---------------- 599 (676)
Q Consensus 540 ~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---------------- 599 (676)
..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.++....
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 999999999999999999999987 456678999999999999999999999999998643
Q ss_pred --CHHHHHHHHHHhhcCCCCCHHHHH
Q 005808 600 --QHKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 600 --~~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
..++|...++..-+.+|=-...|.
T Consensus 286 ~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 286 LSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred cccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 235677777777555554334443
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.76 E-value=3.4e-14 Score=142.57 Aligned_cols=433 Identities=12% Similarity=0.047 Sum_probs=268.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCChhH-HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 005808 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (676)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~-~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~ 119 (676)
.+.-++|..++|.+.+...+..+...|.+.. ....|..+..+|+-++|...++.++..||...--|..+|.++..-.+|
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence 3556889999999999999999997766555 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccc
Q 005808 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (676)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (676)
++|++||+.|+.+.|+...-+..+.-|...+.+.. +. .++
T Consensus 92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~-~~-----~~t---------------------------------- 131 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE-GY-----LET---------------------------------- 131 (700)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh-hH-----HHH----------------------------------
Confidence 99999999998888888776666655444433221 11 000
Q ss_pred cCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCC
Q 005808 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (676)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (676)
...... .
T Consensus 132 ----------------------------------r~~LLq-l-------------------------------------- 138 (700)
T KOG1156|consen 132 ----------------------------------RNQLLQ-L-------------------------------------- 138 (700)
T ss_pred ----------------------------------HHHHHH-h--------------------------------------
Confidence 000000 0
Q ss_pred CcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhh
Q 005808 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (676)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (676)
.+ ..-..+.. +.....+....
T Consensus 139 ------~~-------------------------------------------------~~ra~w~~----~Avs~~L~g~y 159 (700)
T KOG1156|consen 139 ------RP-------------------------------------------------SQRASWIG----FAVAQHLLGEY 159 (700)
T ss_pred ------hh-------------------------------------------------hhHHHHHH----HHHHHHHHHHH
Confidence 00 00000000 00000000001
Q ss_pred hHHHHhhHHHHHHhhccCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Q 005808 360 NEAKRNKKFCVTRISKSKSI-----SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434 (676)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 434 (676)
..+............ ..+. .....+.........|.+++|++.+...-..--+........|.++...+++++|
T Consensus 160 ~~A~~il~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 111111111111111 1111 1224455566666777777777766655433333344556677778888888888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHH--------------H---HHhc
Q 005808 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI-QDLSKALEFEPNSADILHERGI--------------V---NFKF 496 (676)
Q Consensus 435 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~--------------~---~~~~ 496 (676)
...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|.... ...++. + .++.
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~-p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC-PRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc-chhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 88888888888888777777666664222333333 445444444332210 000000 0 0000
Q ss_pred -------------CCHHHHHHHHHHHHHh-----C--------------CCCH--HHHHHHHHHHHHcccHHHHHHHHHH
Q 005808 497 -------------KDFNAAVEDLSACVKL-----D--------------KENK--SAYTYLGLALSSIGEYKKAEEAHLK 542 (676)
Q Consensus 497 -------------~~~~~A~~~~~~al~~-----~--------------~~~~--~~~~~la~~~~~~g~~~~A~~~~~~ 542 (676)
.+.... .++++.+.. . |... ..++.++.-+...|+++.|..+++.
T Consensus 318 g~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred CCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111111 122222211 0 1112 2344567777888899999999999
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-----
Q 005808 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----- 617 (676)
Q Consensus 543 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 617 (676)
++...|..++.+..-|+++...|+.++|..++..+.+++..+..+-..-|.-..+.++.++|.+.+.+.-+...+
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L 476 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNL 476 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhH
Confidence 998888888888888999999999999999999888887766655556777888888888888887776554321
Q ss_pred ----CHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 618 ----NIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 618 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
..+....-|.+|.++|++..|++-|..+-+.
T Consensus 477 ~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 477 AEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 1123334578888888888888877666544
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.75 E-value=1.8e-14 Score=144.61 Aligned_cols=291 Identities=15% Similarity=0.121 Sum_probs=182.2
Q ss_pred HHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (676)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (676)
.+.....|........+++...+..++....+.++++-....-.+.++..|..-..|...+..+...|++..|...++..
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777777777777777777777777777777777777777777777777777777777777777766666
Q ss_pred HHhC---CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005808 442 IQSN---PSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (676)
Q Consensus 442 l~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (676)
.+.. |.. .........+....|.+++|++.+..--...-+........+.++...+++++|...+...+..+
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 5543 222 22333444555566666666666554333333333445556777777777888888887777777
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCcccHHHHHHHHHH-----------------HHHcC----------
Q 005808 514 KENKSAYTYLGLALSSIGEYKKAE-EAHLKAIQLDRNFLEAWGHLTQF-----------------YQDLA---------- 565 (676)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~-----------------~~~~~---------- 565 (676)
|++...+..+-.++..-.+.-+++ ..|...-+..|.... ...++.. .++.|
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~-p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S 328 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC-PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS 328 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc-chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence 777777666666665333333333 444444444433200 0000000 00000
Q ss_pred --CHHHHHHHHHHHH-------hc----C--------cCc--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808 566 --NSEKALECLQQVL-------YI----D--------KRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (676)
Q Consensus 566 --~~~~A~~~~~~al-------~~----~--------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (676)
+..+-...+++.+ .- + |.. .+.++.++..+...|+++.|..+++.|+...|+-++.+
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 0000111222221 10 0 111 23456788889999999999999999999999999999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808 623 YLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (676)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (676)
...|+++...|+.++|..++..+-+++-.+.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 9999999999999999999999999876543
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.9e-15 Score=139.06 Aligned_cols=235 Identities=21% Similarity=0.211 Sum_probs=213.3
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q 005808 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVN 493 (676)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 493 (676)
+..|.-+....+.++|+..|..+++.+|...+++..+|.++...|..+.|+..-+..+.. |+. ..+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 455777777889999999999999999999999999999999999999999998877654 433 34788999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHcCCHH
Q 005808 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQDLANSE 568 (676)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~ 568 (676)
+..|-++.|...|........--..++..+..+|....+|++|++..++..++.+.. ...+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999887666667889999999999999999999999999988765 567888999999999999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
.|+..+.++++.+|.+..+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..+|.++|+.++...++.++.+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 47889999999999999999999999999
Q ss_pred hCCCcHH
Q 005808 648 LELDSME 654 (676)
Q Consensus 648 ~~p~~~~ 654 (676)
..+....
T Consensus 278 ~~~g~~~ 284 (389)
T COG2956 278 TNTGADA 284 (389)
T ss_pred ccCCccH
Confidence 8887543
No 78
>PLN03077 Protein ECB2; Provisional
Probab=99.75 E-value=1e-14 Score=166.88 Aligned_cols=262 Identities=12% Similarity=-0.004 Sum_probs=222.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQA 458 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~ 458 (676)
+...|..+...+...|++++|+.+|+++....+.+...+..+-..+...|..+.+...+..+++..- .+......+...
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 3456777788888999999999999999876555677778888888999999999999999887643 234556678899
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKA 536 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A 536 (676)
|.+.|+.++|...|+.. +.+...|..+...|...|+.++|++.|+++.+. .|+ ...+..+...+...|..++|
T Consensus 534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHH
Confidence 99999999999999886 557889999999999999999999999998875 344 44566666789999999999
Q ss_pred HHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 537 EEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 537 ~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
..+|+.+.+..+ .+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 999999985432 23678899999999999999999999886 34554 677888888888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 615 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
.|++...+..++.+|...|++++|.+..+...+.
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999999999999999999999999887653
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=6.3e-16 Score=157.92 Aligned_cols=250 Identities=18% Similarity=0.187 Sum_probs=164.6
Q ss_pred HhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH
Q 005808 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (676)
......|........+|..|..+|+|+.|+..|+.+++.- ....|. ..|.-...
T Consensus 190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l-------------~k~~G~-------------~hl~va~~ 243 (508)
T KOG1840|consen 190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRIL-------------EKTSGL-------------KHLVVASM 243 (508)
T ss_pred hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------------HHccCc-------------cCHHHHHH
Confidence 3445566666677777777777777777777777777650 000000 01111122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CC
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KE 515 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~ 515 (676)
...+|.+|..++++.+|+..|++++.+ +|....++.++|.+|...|++++|..++++++.+. |.
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 224556666666666666666666543 22223456666666666666666666666665542 11
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Q 005808 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID------ 581 (676)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------ 581 (676)
-...+..++.++...+++++|+.++++++++. +.-+..+.++|.+|..+|++++|.+.+++++...
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 23445666777777777777777777776652 2336677888888888888888888888888653
Q ss_pred --cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 582 --KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 582 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
+.....+..+|..+.+.+++.+|...|.++..+ .|+....+.+|+.+|..+|++++|.++.++++.
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 223456778888888888888888888877654 344457888999999999999999999988874
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.72 E-value=2.2e-15 Score=153.95 Aligned_cols=233 Identities=19% Similarity=0.191 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEA 451 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~ 451 (676)
...+...+..--..--+..|+..+.+..... |.-......+|.+|...+++.+|+..|++++.+ +|.-..+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3444444444444444555555544443321 221233345888888888888888888888865 2333557
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----C---C
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----K---E 515 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~---~ 515 (676)
+.+||.+|...|++++|..++++++++. |.-...+..++.++...+++++|..++++++++. + .
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 7888888888888888888888887663 2224467788888999999999999999888763 2 2
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q 005808 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------- 580 (676)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 580 (676)
-+..+.++|.+|..+|++++|.+.+++++.+. +.....+..+|..|.+.+++.+|...|.++..+
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~ 445 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD 445 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC
Confidence 24678889999999999999999999999874 223567888999999999999999999888765
Q ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (676)
Q Consensus 581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (676)
.|+....+.+||.+|..+|+++.|+++.+.++.
T Consensus 446 ~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 446 HPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344557799999999999999999999998874
No 81
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=6.7e-12 Score=121.49 Aligned_cols=444 Identities=14% Similarity=0.101 Sum_probs=306.2
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005808 41 IELAKL-CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (676)
Q Consensus 41 ~~~~~~-~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~ 118 (676)
++.++. -.++++.+|...|.+|+..+ .++..+..-|.+-.+.++...|-..+++|+.+-|.--+-++..-..-..+|+
T Consensus 77 ikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 77 IKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 344442 46789999999999999999 9999999999999999999999999999999999999999988888899999
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcc
Q 005808 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (676)
Q Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (676)
...|.+.|++-++..|+.-.=...+ ...--.........+...+-.
T Consensus 157 i~gaRqiferW~~w~P~eqaW~sfI-~fElRykeieraR~IYerfV~--------------------------------- 202 (677)
T KOG1915|consen 157 IAGARQIFERWMEWEPDEQAWLSFI-KFELRYKEIERARSIYERFVL--------------------------------- 202 (677)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHH-HHHHHhhHHHHHHHHHHHHhe---------------------------------
Confidence 9999999999988888764322211 111111111011100000000
Q ss_pred ccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCC
Q 005808 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (676)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (676)
+.
T Consensus 203 --------------------------------------------~H---------------------------------- 204 (677)
T KOG1915|consen 203 --------------------------------------------VH---------------------------------- 204 (677)
T ss_pred --------------------------------------------ec----------------------------------
Confidence 00
Q ss_pred CCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhh
Q 005808 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (676)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (676)
.....+.++..+...
T Consensus 205 -----------------------------------------------------------------P~v~~wikyarFE~k 219 (677)
T KOG1915|consen 205 -----------------------------------------------------------------PKVSNWIKYARFEEK 219 (677)
T ss_pred -----------------------------------------------------------------ccHHHHHHHHHHHHh
Confidence 000012222222211
Q ss_pred hhHHHHhhHHHHHHh---hccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcccH--
Q 005808 359 SNEAKRNKKFCVTRI---SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--ALIGRGTARAFQREL-- 431 (676)
Q Consensus 359 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~-- 431 (676)
.... .......... ...+......+..-|..-..+..++.|..+|.-+++.-|.+-. .+-..-..-.+-|+.
T Consensus 220 ~g~~-~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 220 HGNV-ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred cCcH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh
Confidence 1110 0011111111 1112222334445556666677888999999999988887732 333333333344543
Q ss_pred -HHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHH---H-----Hh
Q 005808 432 -EAAI-----SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD--ILHERGIV---N-----FK 495 (676)
Q Consensus 432 -~~A~-----~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~la~~---~-----~~ 495 (676)
++++ --|++.+..+|.+.++|+..-.+....|+.+.-.+.|++++...|...+ .|.....+ | +.
T Consensus 299 IEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2232 2466778888999999999888888889999999999999987775433 22222211 1 24
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808 496 FKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (676)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 571 (676)
..+.+.+.+.|+.++++-|.. +.+|...|....++.+...|.+++-.++-..|.+ ........+-.++++++...
T Consensus 379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHH
Confidence 678888999999999988865 4678888888888899999999999999988884 44555566777889999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI--ECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 572 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
.+|++.++..|.+..+|...|.+-..+|+.+.|...|+-|++...-+. ..|......-...|.++.|...|++.++..
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988654333 344455556677899999999999999988
Q ss_pred CCcHHHHHHHHHHHHHh
Q 005808 650 LDSMEKFVLQCLAFYQV 666 (676)
Q Consensus 650 p~~~~~~~~~~~~~~~~ 666 (676)
+... .|.. .+.|+.
T Consensus 538 ~h~k-vWis--FA~fe~ 551 (677)
T KOG1915|consen 538 QHVK-VWIS--FAKFEA 551 (677)
T ss_pred ccch-HHHh--HHHHhc
Confidence 7765 4443 344443
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.69 E-value=4.7e-14 Score=145.02 Aligned_cols=275 Identities=15% Similarity=0.042 Sum_probs=197.1
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH----HHHHHHHHHHhCCCcHH
Q 005808 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA----AISDFTEAIQSNPSAGE 450 (676)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~ 450 (676)
.......+..+..|..+...|++++|...++++++.+|.+..++.. +..+...|++.. +...+.......|....
T Consensus 37 ~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (355)
T cd05804 37 AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWY 115 (355)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHH
Confidence 3344556778888999999999999999999999999998877765 555555554443 44444333345666777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHH
Q 005808 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLA 526 (676)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~ 526 (676)
.+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.++.+++...|.++ ..+..++.+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999999999999999999998876432 345678999
Q ss_pred HHHcccHHHHHHHHHHHHhcCcc--cHHHHH---HHHHHHHHcCCHHHHHHH--H-HHHHhcCcC--cHHHHHHHHHHHH
Q 005808 527 LSSIGEYKKAEEAHLKAIQLDRN--FLEAWG---HLTQFYQDLANSEKALEC--L-QQVLYIDKR--FSKAYHLRGLLLH 596 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~~~~~~A~~~--~-~~al~~~~~--~~~~~~~la~~~~ 596 (676)
+...|++++|+..+++++...|. ...... .+...+...|....+..+ + .......+. ........+.++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 99999999999999998766552 221111 222233334433333332 1 111111111 2233346788888
Q ss_pred HcCCHHHHHHHHHHhhcCCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 597 GLGQHKKAIKDLSSGLGIDPS---------NIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
..|+.++|...++........ ........+.++...|++++|...+..++.+-.
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999998877553221 246677889999999999999999999987653
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.8e-12 Score=127.75 Aligned_cols=285 Identities=15% Similarity=0.081 Sum_probs=190.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMY-------PEALIGRGTARAFQRELEAAISDFTEAIQS 444 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (676)
+-+.+|..|..+...|+|.+|++.++++++. +.+. ..+...++.++..+|+..+|...|...+..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 4678899999999999999999999999432 1111 345678899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCC----HH-HHHHHHHHHHhcCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808 445 NPSAGEAWKRRGQARAALGE----SV-EAIQDLSKALEFEPN----------SADILHERGIVNFKFKDFNAAVEDLSAC 509 (676)
Q Consensus 445 ~~~~~~~~~~la~~~~~~g~----~~-~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (676)
+|.+.........-...... ++ .++..++......++ -..++.+.+.+.+..+..+.+.+.....
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 88776443333222222111 11 122222222211111 1234556666666667666666655544
Q ss_pred HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hc
Q 005808 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVL--------YI 580 (676)
Q Consensus 510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~ 580 (676)
-...|..............+...+.+|..++....+..|.. ..+...++.+.+.+|++..|++.+...+ +.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 33344433222333333344447889999999999998887 6778888999999999999999998333 22
Q ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (676)
Q Consensus 581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (676)
. ..|.+-..+-.++...++.+-|...+..++.. .+.....+..++..-.+.|+-++|...+++.++.+|++.
T Consensus 414 ~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 414 K-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred c-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 1 23444555556667777766677777666643 222234556677777888999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 005808 654 EKFVLQCLAFYQ 665 (676)
Q Consensus 654 ~~~~~~~~~~~~ 665 (676)
+....+..+|-+
T Consensus 493 ~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 493 DLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHHHHh
Confidence 988877776654
No 84
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=2e-15 Score=129.03 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCChh------HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH
Q 005808 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ------DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK 109 (676)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~------~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 109 (676)
+...+.+++++|.+|+|.+|..-|+.||+++|... +|.|||.|+++++.++.||.+|.+||+++|++-+|+.|+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 34445788999999999999999999999994432 389999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 005808 110 GCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (676)
Q Consensus 110 g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~ 151 (676)
+.+|.++.++++|+..|.++++++|..-.....+.++.|...
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999999998888888888888643
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=4.8e-14 Score=135.42 Aligned_cols=196 Identities=17% Similarity=0.048 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---H
Q 005808 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---I 485 (676)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 485 (676)
+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 33456666666666666666666666666666666543 35566666666666666666666666666665443 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (676)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 565 (676)
++.+|.++... ++.++...|++++|+..+++++..+|++...+..+..+....+
T Consensus 110 ~~~~g~~~~~~--------------------------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~ 163 (235)
T TIGR03302 110 YYLRGLSNYNQ--------------------------IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN 163 (235)
T ss_pred HHHHHHHHHHh--------------------------cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 55555555443 0001111245555555555555555555433322211111000
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHhccHHHHHHHH
Q 005808 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDY 642 (676)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 642 (676)
. .......+|.++...|++.+|+..+++++...|+. +.+++.+|.++..+|++++|..++
T Consensus 164 ----~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 164 ----R-------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred ----H-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 01123356666777777777777777777665543 466777777777777777777766
Q ss_pred HHHHhhCC
Q 005808 643 DAALDLEL 650 (676)
Q Consensus 643 ~~al~~~p 650 (676)
+.+....|
T Consensus 227 ~~l~~~~~ 234 (235)
T TIGR03302 227 AVLGANYP 234 (235)
T ss_pred HHHHhhCC
Confidence 66655544
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.63 E-value=3.7e-14 Score=136.19 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=158.1
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--
Q 005808 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-- 450 (676)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 450 (676)
..+..++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3466789999999999999999999999999999999875 68899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808 451 -AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (676)
Q Consensus 451 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 521 (676)
+++.+|.++... |++++|+..|++++..+|++...+..+..+....+ . ......
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence 788999999876 78999999999999999998765543332211110 0 012235
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (676)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 582 (676)
.+|.++...|++.+|+..+++++...|+. +.+++.+|.++...|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 68888999999999999999999987654 67899999999999999999998888776554
No 87
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=2.4e-12 Score=122.70 Aligned_cols=263 Identities=16% Similarity=0.091 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQAR 459 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~ 459 (676)
.......|..-+..|+|.+|.....+.-+..+....++..-+......|+++.+-.++.++-+..+++ ..+....+.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 44556677778889999999999999888888777888888899999999999999999999885544 55677889999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-------------------------
Q 005808 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK------------------------- 514 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------------------- 514 (676)
...|++..|.....+++...|.++.++.....+|...|+|......+.+..+..-
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999888877655321
Q ss_pred -----------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 515 -----------------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (676)
Q Consensus 515 -----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (676)
+++.+...++.-+...|+.++|.+...++++..-+.. ....++ ...-++...=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence 1233344455556666777777777776666543322 111111 22356666666666777
Q ss_pred HhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 578 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++-
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777766 56677777777777777777777777764
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=4.6e-14 Score=122.61 Aligned_cols=125 Identities=14% Similarity=0.048 Sum_probs=95.3
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (676)
Q Consensus 537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (676)
..+++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45667777777764 445677777778888888888888777787777888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (676)
+++.+++.+|.++..+|++++|+..|++++++.|+++..+..++.+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 778888888888888888888888888888888887777766665543
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=8.2e-12 Score=129.77 Aligned_cols=269 Identities=17% Similarity=0.106 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
.+.++..+.++...|++++|+..+......-.+...++-.+|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46777888888999999999999988888888888888899999999999999999999999999999988888887773
Q ss_pred HcC-----CHHHHHHHHHHHHhcCCCCH--------------------------------HHHHHHHHHHHhcCCHHHHH
Q 005808 461 ALG-----ESVEAIQDLSKALEFEPNSA--------------------------------DILHERGIVNFKFKDFNAAV 503 (676)
Q Consensus 461 ~~g-----~~~~A~~~~~~al~~~p~~~--------------------------------~~~~~la~~~~~~~~~~~A~ 503 (676)
... +.+.-...|+......|... .++..+-.+|....+..-..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 332 45666777777766665431 12222222333222222222
Q ss_pred HHHHHHHHh---------------CCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q 005808 504 EDLSACVKL---------------DKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (676)
Q Consensus 504 ~~~~~al~~---------------~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 566 (676)
..+...... .|... .+++.++..|...|++++|+.+.++++...|..++.+...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 222222211 11112 3557789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--C-------HHHHHHHHHHHHHhccHHH
Q 005808 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--N-------IECLYLRASCYHAIGEYRE 637 (676)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~ 637 (676)
+.+|...++.+..+++.+-.+-...+..+++.|+.++|.+.+......+.+ . .+.....|.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999888889999999999999999999888765521 1 2344567999999999999
Q ss_pred HHHHHHHHHhhC
Q 005808 638 AIKDYDAALDLE 649 (676)
Q Consensus 638 A~~~~~~al~~~ 649 (676)
|++.|..+.+..
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999999888753
No 90
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.7e-10 Score=111.88 Aligned_cols=249 Identities=13% Similarity=0.107 Sum_probs=201.7
Q ss_pred HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH---HHcccHHH
Q 005808 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE-------ALIGRGTAR---AFQRELEA 433 (676)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~---~~~g~~~~ 433 (676)
...++........+|.+-+.++..-..--..|+.+.-.+.|++++...|.... +|..+-.++ ....+.+.
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34455667778889999999999999999999999999999999988775422 122222222 34578899
Q ss_pred HHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808 434 AISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (676)
Q Consensus 434 A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (676)
+...|+.++++-|.. ...|...|.....+.+...|.+.+-.++...|.+ ..+.....+-.++++++....+|++.
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999998864 6789999999999999999999999999999965 45566777788899999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH
Q 005808 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (676)
Q Consensus 510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 587 (676)
+...|.+..+|...|..-..+|+.+.|..+|+-++....-+. ..|......-...|.++.|..+|++.++..+... +
T Consensus 464 le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-v 542 (677)
T KOG1915|consen 464 LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-V 542 (677)
T ss_pred HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-H
Confidence 999999999999999999999999999999999998765443 3444555566778999999999999999887654 7
Q ss_pred HHHHHHHHH-----HcC-----------CHHHHHHHHHHhhcC
Q 005808 588 YHLRGLLLH-----GLG-----------QHKKAIKDLSSGLGI 614 (676)
Q Consensus 588 ~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~ 614 (676)
|...|..-. +.+ +...|...|++|...
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 777766554 444 567788888888754
No 91
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.4e-12 Score=115.03 Aligned_cols=207 Identities=18% Similarity=0.157 Sum_probs=149.2
Q ss_pred ccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 005808 429 RELEAAISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (676)
Q Consensus 429 g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 502 (676)
.+.++-+++....+.. .++...++-....+....|+.+-|..++++.....|.+..+....|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 4566666666665543 2333445555566666777777777777777777777777777777777777888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (676)
Q Consensus 503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 582 (676)
+++|+..+..+|.+..++...-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-..|
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 88888777777777777777777777777777777777777777777778888888888777888888878877777777
Q ss_pred CcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccH
Q 005808 583 RFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635 (676)
Q Consensus 583 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 635 (676)
.++..+..+|.+++-.| ++.-|.++|.++++++|.+...++.+-.+....-+.
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 77777777777777665 556677777777777776666666665555444433
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.57 E-value=9.4e-13 Score=135.34 Aligned_cols=205 Identities=16% Similarity=0.108 Sum_probs=170.7
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005808 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487 (676)
Q Consensus 411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 487 (676)
+|+.+.++..+|.++...|+.+.+...+.++....|.+ .+.....+.++...|++++|...+++++..+|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 79999999999999999999999999998888877754 556777888999999999999999999999999987766
Q ss_pred HHHHHHHhcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 005808 488 ERGIVNFKFKD----FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (676)
Q Consensus 488 ~la~~~~~~~~----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 563 (676)
. +..+...|+ ...+...+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5 555554444 44444444443345677777888889999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCcCcH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808 564 LANSEKALECLQQVLYIDKRFS----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (676)
Q Consensus 564 ~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (676)
.|++++|+.++.+++...|..+ ..+..+|.++...|++++|+..|++++...|
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999998876432 3466899999999999999999999987666
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=1e-13 Score=120.43 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005808 402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481 (676)
Q Consensus 402 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 481 (676)
.+|+++++.+|++ ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3444555555442 3344555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (676)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (676)
++.+++.+|.++...|++++|+..|++++...|+++..+..++.+.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555444443
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=3.9e-11 Score=124.76 Aligned_cols=185 Identities=12% Similarity=0.025 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 461 (676)
..++.+|..|-..|++++|+.+++++++..|..++.+...|.++.+.|++.+|...++.+..+++.+-.+....+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 35577788888888888888888888888888888888888888888888888888888888888888777788888888
Q ss_pred cCCHHHHHHHHHHHHhcCC--CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808 462 LGESVEAIQDLSKALEFEP--NS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (676)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (676)
.|+.++|...+......+. .. .+.....|.+|.+.|++..|++.|..+.+......+-.+..-..+.+.+-
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t 354 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT 354 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc
Confidence 8888888888877655442 11 12334568888888888888888888777643322222222222333333
Q ss_pred HHHHHHHHH--HHHhcCcccHHHHHHHHHHHHHcCC
Q 005808 533 YKKAEEAHL--KAIQLDRNFLEAWGHLTQFYQDLAN 566 (676)
Q Consensus 533 ~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~~~ 566 (676)
+..=+..++ .-+...|....+......+|+...+
T Consensus 355 ~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d 390 (517)
T PF12569_consen 355 LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHD 390 (517)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhc
Confidence 222222221 1222345556666666677766544
No 95
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.3e-12 Score=115.12 Aligned_cols=205 Identities=14% Similarity=0.031 Sum_probs=175.8
Q ss_pred HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808 393 NEGKYASAISIFDQILKED------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (676)
Q Consensus 393 ~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 466 (676)
...+.++-+++...++... |+....+-....+....|+.+.|..++.+.....|.+..+....|..+...|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 3456777888887776532 3334555667777788899999999999998888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 005808 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (676)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (676)
+|+++|+..++.+|.+...+.....+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 99999999999999998888888888888999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q 005808 547 DRNFLEAWGHLTQFYQDLA---NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (676)
Q Consensus 547 ~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (676)
.|.++..+..+|.+++-+| +..-|.++|.++++++|.+..+++.+-.+...
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 9999999999999988766 56778999999999999777777766555433
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.54 E-value=5.4e-13 Score=122.38 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=96.3
Q ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH-HHcCC--HHHHHH
Q 005808 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-HGLGQ--HKKAIK 606 (676)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~ 606 (676)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++...|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 556677777777777777777777777887777778888888888888777777777777777764 56666 477888
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
.++++++.+|+++.++..+|.++...|++++|+.+|++++++.|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 8888888888878888888888888888888888888887777765543
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=1.6e-12 Score=117.56 Aligned_cols=176 Identities=20% Similarity=0.192 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005808 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (676)
Q Consensus 434 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (676)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444444455556666666 6666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 005808 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (676)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (676)
|++..+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666555556666666666
Q ss_pred HHHHcCCHHHHHHHHHH
Q 005808 594 LLHGLGQHKKAIKDLSS 610 (676)
Q Consensus 594 ~~~~~g~~~~A~~~~~~ 610 (676)
+....|++.+|.....+
T Consensus 211 ~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 211 VVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhhcCChHHHHhhccc
Confidence 66666666666655443
No 98
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.52 E-value=6.7e-14 Score=129.62 Aligned_cols=104 Identities=20% Similarity=0.170 Sum_probs=96.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005808 40 RIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (676)
Q Consensus 40 ~~~~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~ 118 (676)
+.+++++|.+|.|++||+||+++|...| |+..+.|||.+|++++.|..|..||..|+.+|-.+++||-|+|.+-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHH
Q 005808 119 KEEALSVWEKGYEHALHQSADLKQF 143 (676)
Q Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~~ 143 (676)
..+|.+.++.+|++.|+.-+-.+..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHH
Confidence 9999999999999988864443333
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.52 E-value=4.4e-12 Score=137.42 Aligned_cols=231 Identities=15% Similarity=-0.012 Sum_probs=164.1
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (676)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (676)
+.-..+..-.|....++..++..+...+++++|+.+++..++..|+...+++.+|.+++..+++.++.-. .++...+.
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 3334445667888999999999999999999999999999999999999999999999999987776554 44444333
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (676)
+ .++ .++.++...+...+.+..+++.+|.+|-++|++++|...++++++.+|+++.++.++|..+
T Consensus 96 ~--------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 96 N--------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred c--------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 3 233 3444444444445555666667777777777777777777777777777777777777666
Q ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH--------------------
Q 005808 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA-------------------- 587 (676)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------------- 587 (676)
... +.++|+.++.+++.. +...+++..+.+++.+.+..+|.+.+.
T Consensus 161 ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHH
Confidence 666 667777766666654 344455666666666666655554332
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (676)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (676)
+.-+-..|...++|++++.+++.+++.+|++..+...++.+|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2333366777788888888888888888888888888888887
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.51 E-value=2.3e-12 Score=116.61 Aligned_cols=183 Identities=17% Similarity=0.105 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (676)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (676)
+...+...+-+....+|.+..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344667777778889999999 999999999999999999999999999999999988999999999999999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
....|+++.+|..+|.+|.+.|+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.+..+..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHh
Q 005808 624 LRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
+++.+....|++.+|...-.+-+.
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHhhcCChHHHHhhcccccc
Confidence 999999999999999988765443
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=2.2e-12 Score=118.33 Aligned_cols=124 Identities=17% Similarity=0.164 Sum_probs=88.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHcCC--HHHHHH
Q 005808 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY-QDLAN--SEKALE 572 (676)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~ 572 (676)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 455667777777777777777777777777777777777777777777777777777777777753 55555 477777
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 005808 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (676)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (676)
.++++++.+|+++.++..+|..+...|++++|+.+++++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777777777777777777777777777777777777666543
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.50 E-value=4.1e-12 Score=137.64 Aligned_cols=227 Identities=16% Similarity=0.068 Sum_probs=194.2
Q ss_pred HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005808 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488 (676)
Q Consensus 409 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 488 (676)
..+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++...+++..+.-+ .++..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~---------- 92 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS---------- 92 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh----------
Confidence 357888999999999999999999999999999999999999999999999999886665544 44333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q 005808 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (676)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 568 (676)
.....++ .+++++...+...+.+..+++.+|.||.++|++++|...|+++++.+|+++.+++++|..|... +.+
T Consensus 93 ----~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 93 ----FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ----cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 3334455 5666666677778888889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH--------------------HHHHHHH
Q 005808 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC--------------------LYLRASC 628 (676)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------~~~la~~ 628 (676)
+|+.++.+++.. +...++|..+.+++.+.+..+|++.+. +.-+-..
T Consensus 167 KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 167 KAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 999999999866 566678888999999998888886544 2233478
Q ss_pred HHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
|...++|++++.+++.+++.+|.|..+...++.+|-+.-
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY 271 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKY 271 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHc
Confidence 888999999999999999999999999999998886543
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.49 E-value=4.6e-12 Score=136.62 Aligned_cols=150 Identities=13% Similarity=-0.026 Sum_probs=106.4
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH
Q 005808 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586 (676)
Q Consensus 507 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 586 (676)
.......|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++...|+++.
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence 33344456667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (676)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (676)
+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7777777777777777777777777776777777777777777777777777777777777665554443
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.49 E-value=6.8e-13 Score=128.73 Aligned_cols=259 Identities=13% Similarity=0.048 Sum_probs=199.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808 388 GIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (676)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 466 (676)
.+.++..|+|..++..++ ....++. .......+.+++..+|+++..+..+.. ..+....+...++..+...++.+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 456778999999998777 3233332 355678889999999998877655433 22333445556666665555677
Q ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 467 EAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (676)
Q Consensus 467 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (676)
.++..++..+.... .++.+....|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777766553332 34556777788999999999999988754 567888888999999999999999999999
Q ss_pred hcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808 545 QLDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (676)
Q Consensus 545 ~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (676)
+.+.+..-+....+++....| ++.+|...|++..+..+..+..+..++.++..+|+|++|...+.+++..+|++++++
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 988887666666666666666 599999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccH-HHHHHHHHHHHhhCCCcHHH
Q 005808 623 YLRASCYHAIGEY-REAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 623 ~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 655 (676)
.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999998 67888999999999998765
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3.3e-10 Score=113.20 Aligned_cols=261 Identities=13% Similarity=0.031 Sum_probs=165.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQ 457 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~ 457 (676)
.+...+...|..+++.|+|++|+.+|+.+++.+.++.+............. ..+ . ..+.+...|. ..+.+++.+.
T Consensus 108 ~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac 183 (652)
T KOG2376|consen 108 LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTAC 183 (652)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHH
Confidence 334566677888899999999999999988877666554443322221110 011 1 2333444444 5678889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC-------CCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005808 458 ARAALGESVEAIQDLSKALEFE-------PNS--------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (676)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 522 (676)
++...|+|.+|++.+++++.+. ..+ ..+...++.++...|+.++|...|...++.+|.+......
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence 9999999999999999985431 111 2256778889999999999999999999988877643332
Q ss_pred HHHHHHHccc----HH-HHHHHHHHHHhcCc----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH
Q 005808 523 LGLALSSIGE----YK-KAEEAHLKAIQLDR----------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (676)
Q Consensus 523 la~~~~~~g~----~~-~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 587 (676)
..+-+..... ++ .++..++......+ ....++.+.+.+.+..+.-+.+.+.....-...|....-
T Consensus 264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~ 343 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFP 343 (652)
T ss_pred HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHH
Confidence 2222211111 11 11112211111111 113445566666666666666666555444444433222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHhccHHHHHHHHH
Q 005808 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYD 643 (676)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 643 (676)
-........+...+..|.+++....+.+|.+ ..+.+.++.+...+|+++.|+..+.
T Consensus 344 ~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 344 ILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2233333333347899999999999999987 6788999999999999999999999
No 106
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=6.3e-13 Score=127.79 Aligned_cols=122 Identities=21% Similarity=0.271 Sum_probs=106.3
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc----------------CChhHHHHHHHHHHHhhCHHHHHHHHHHH
Q 005808 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS----------------YEIQDICNRAFCYSQLELHKHVIRDCDKA 95 (676)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~----------------~~~~~~~~ra~~~~~~g~~~~A~~~~~~a 95 (676)
+.+-+...|..++.+|+.|+|..|+..|.+|+..= .-..++.|+|.|+++++.|..|+..|+++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 55566777788899999999999999999986521 11223789999999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 005808 96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (676)
Q Consensus 96 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~ 153 (676)
|+++|+|++|+||+|.+++.+|+++.|+..|++++++.|++.+...+++.+.......
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988888887777655443
No 107
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.47 E-value=8.9e-13 Score=125.22 Aligned_cols=265 Identities=19% Similarity=0.189 Sum_probs=206.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----C--CCcHHHHH
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQS----N--PSAGEAWK 453 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--~~~~~~~~ 453 (676)
+-..|.-++..|++...+..|+.+++...++ ..+|..+|.+|+..++|.+|+++-.-=+.+ . -.....--
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 3355788899999999999999999988776 356788999999999999999876543322 1 12234556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 005808 454 RRGQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKD--------------------FNAAVEDLS 507 (676)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~ 507 (676)
++|..+...|.|++|+-+..+-+.+.. ....+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 789999999999999999888775532 135689999999987664 345556665
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 508 ACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQ 575 (676)
Q Consensus 508 ~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~ 575 (676)
.-+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+.... ..++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 555543322 3466778899999999999999988877765443 5688999999999999999999999
Q ss_pred HHHhcC----c--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808 576 QVLYID----K--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYD 643 (676)
Q Consensus 576 ~al~~~----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (676)
..+.+. . -.+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||.++-.+|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 886542 2 2356688999999999999999999998776532 235788999999999999999999988
Q ss_pred HHHhh
Q 005808 644 AALDL 648 (676)
Q Consensus 644 ~al~~ 648 (676)
+.+++
T Consensus 340 ~hl~~ 344 (639)
T KOG1130|consen 340 LHLRS 344 (639)
T ss_pred HHHHH
Confidence 88764
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.45 E-value=4.2e-12 Score=129.64 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=198.5
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (676)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 455 (676)
.-|........+|..++..|-...|+.+|++. ..|-....||...|+..+|.....+-++ .|.++..|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 34555667788999999999999999999984 6677788999999999999999998888 67788888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 535 (676)
|.+.....-|++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.
T Consensus 464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 88887777777777776543 344667778878888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 536 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
|.++|..++...|++..+|++++..|...++..+|...+.++++.+-.+..+|-+...+....|.+++|++.+.+.+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888999999999999999999999999998765
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.44 E-value=8.2e-12 Score=127.57 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=200.2
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (676)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (676)
........++..+...|-...|+..|++. ..|-....||...|+..+|.....+-++ .|.++..|..+|.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 33456678999999999999999999985 4566788999999999999999999988 67788899999888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q 005808 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (676)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 572 (676)
.....-|++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.+
T Consensus 467 ~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 87777777777766553 344667777778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
+|..++...|++..+|.+++.+|...|+-.+|...++++++.+-++..+|.+.-.+..+.|.+++|++.+.+.+.+..+
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876543
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.44 E-value=3.8e-12 Score=110.46 Aligned_cols=118 Identities=21% Similarity=0.205 Sum_probs=102.7
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (676)
..+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+.++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
++..++.+|.++...|++++|+..|+++++++|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 88888888999988999999999999999988888764
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=8.1e-10 Score=101.07 Aligned_cols=387 Identities=17% Similarity=0.179 Sum_probs=261.4
Q ss_pred HHHhcCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005808 45 KLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (676)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~ 123 (676)
++....+|.+||.+.+.-.+.+| +-...+.+|.||++..+|..|...|+..-.+.|+..+-.+.-+..+.+-+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34667899999999999999886 66669999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccccCcC
Q 005808 124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ 203 (676)
Q Consensus 124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (676)
.......+ ++.-+...+++.....--..++
T Consensus 99 rV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl---------------------------------------------- 128 (459)
T KOG4340|consen 99 RVAFLLLD----NPALHSRVLQLQAAIKYSEGDL---------------------------------------------- 128 (459)
T ss_pred HHHHHhcC----CHHHHHHHHHHHHHHhcccccC----------------------------------------------
Confidence 88777632 2222222333222111000000
Q ss_pred CcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCCccc
Q 005808 204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI 283 (676)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (676)
..
T Consensus 129 -------------------------~g----------------------------------------------------- 130 (459)
T KOG4340|consen 129 -------------------------PG----------------------------------------------------- 130 (459)
T ss_pred -------------------------cc-----------------------------------------------------
Confidence 00
Q ss_pred CCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhhHHH
Q 005808 284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK 363 (676)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (676)
T Consensus 131 -------------------------------------------------------------------------------- 130 (459)
T KOG4340|consen 131 -------------------------------------------------------------------------------- 130 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (676)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (676)
.+..+.. ......++.....|-..+..|+|+.|++-|+.+++...-++..-++++.++++.|++..|+++....++
T Consensus 131 --~rsLveQ--lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 131 --SRSLVEQ--LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred --hHHHHHh--ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 0000000 001134667777888899999999999999999999999999999999999999999999998887765
Q ss_pred h----CCCc-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHH
Q 005808 444 S----NPSA-------------------------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-----SADILHER 489 (676)
Q Consensus 444 ~----~~~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l 489 (676)
. .|.. .+++...+.++++.|+++.|.+.+.. +.|. +|..+.++
T Consensus 207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQ 283 (459)
T ss_pred hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHH
Confidence 3 3321 13555677788899999988876643 3332 35566776
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHH-HH
Q 005808 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFY-QD 563 (676)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~-~~ 563 (676)
+..-. .+++.+...-+.-.+.++|-..+.+.++-.+|.+..-++-|...+-+ +|+. ....+.+-..+ ..
T Consensus 284 Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~ 358 (459)
T KOG4340|consen 284 ALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALITC 358 (459)
T ss_pred HHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhC
Confidence 65443 45677777888888889998888888999999988888877766543 3432 12223333322 23
Q ss_pred cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 005808 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640 (676)
Q Consensus 564 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 640 (676)
.-..++|.+-+...-....+...........-...+ ....|++.|+.+++.. ..+....+++|+...+|..+.+
T Consensus 359 qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk 435 (459)
T KOG4340|consen 359 QTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEK 435 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHH
Confidence 445666665555443221111000000001111111 1234555566665543 3467788999999999999999
Q ss_pred HHHHHHhhCCCcHH
Q 005808 641 DYDAALDLELDSME 654 (676)
Q Consensus 641 ~~~~al~~~p~~~~ 654 (676)
.|+...+...++..
T Consensus 436 ~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 436 IFRKSVEFCNDHDV 449 (459)
T ss_pred HHHHHHhhhcccce
Confidence 99999988766543
No 112
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.3e-09 Score=102.78 Aligned_cols=230 Identities=17% Similarity=0.091 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-H-------HH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-E-------AW 452 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~-------~~ 452 (676)
....+.++......|++..|..-..++++..|.++.++.....+|...|++.....++.+..+..--+. + ++
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 345667788899999999999999999999999999999999999999999999999888776543221 1 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (676)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (676)
..+-.-....+..+.-..+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. ....+ -....++
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d 309 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGD 309 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCC
Confidence 11111111122222222334333333335678888999999999999999999999998865543 22222 2345688
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (676)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (676)
...-++..++.++..|+++..+..+|..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|...++.++
T Consensus 310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred chHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999988875 6778999999999999999999999988
Q ss_pred cC
Q 005808 613 GI 614 (676)
Q Consensus 613 ~~ 614 (676)
..
T Consensus 389 ~~ 390 (400)
T COG3071 389 LL 390 (400)
T ss_pred HH
Confidence 43
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=2.1e-11 Score=131.56 Aligned_cols=154 Identities=10% Similarity=-0.014 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478 (676)
Q Consensus 399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 478 (676)
+++.-+.......|.+++++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33334444445677778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH
Q 005808 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552 (676)
Q Consensus 479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 552 (676)
.|+++..++.+|.++...|++++|+..|++++..+|++..++..+|.++...|+.++|...|+++++....-..
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 88888888888888888888888888888888877777888888888888888888888888888776544333
No 114
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.40 E-value=6e-12 Score=127.03 Aligned_cols=112 Identities=23% Similarity=0.254 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005808 39 ARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (676)
Q Consensus 39 ~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~ 117 (676)
-+.++..+|..|+|++|+.+|.++|+++ .+...|++||.||+++|++++|+.++++|+.++|+++.+|+++|.+|..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3456788999999999999999999999 666779999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH
Q 005808 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELL 150 (676)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~ 150 (676)
++++|+..|++++.++|+++.....+..+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988877765554444
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.1e-09 Score=124.90 Aligned_cols=269 Identities=17% Similarity=0.053 Sum_probs=191.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHH
Q 005808 386 SRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR 454 (676)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~ 454 (676)
.+|..+...|++++|...+++++...+.. ..+...+|.++...|++++|...+.+++...... ..++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 45677778899999999999888754432 2345677888888999999999998888653321 235567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 005808 455 RGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYT 521 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~ 521 (676)
+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++..... ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 788888999999999998888765211 1234556788888889999999998888765321 234556
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH----HHHHH
Q 005808 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAW----GHLTQFYQDLANSEKALECLQQVLYIDKRFS----KAYHL 590 (676)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~ 590 (676)
.++.++...|++++|...+.++....+.. .... ......+...|+.+.|..++.......+... ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 67888889999999999888887653321 1111 1122444557888888888777654322222 12457
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808 591 RGLLLHGLGQHKKAIKDLSSGLGID------PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
++.++...|++++|...+++++... .....++..+|.++...|+.++|...+.+++++......
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 8888899999999999999887652 122457788899999999999999999999987755433
No 116
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=4.2e-10 Score=105.27 Aligned_cols=274 Identities=14% Similarity=0.093 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 461 (676)
...+..|.|++..|+|++|+..|+-+...+.-+.+.+.++|.+++..|.|.+|.....+ .|+.+-....+-.+..+
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHH
Confidence 34445555666666666666666655554444455556666666666666655544433 24444333333344444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (676)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (676)
.++-++-... ..-++ +..+-...++.+.+..-.|++|++.|++++..+|+....-..++.||.++.-++-+.+.+.
T Consensus 134 lndEk~~~~f-h~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 134 LNDEKRILTF-HSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred hCcHHHHHHH-HHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 4443332222 22111 1123334455555555566666666666666666665555666666666666666666666
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (676)
Q Consensus 542 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (676)
-.++..|+++-+....+...++.=+-..|..-....... +...+.+-...-.-+.--.+-+.|++.+--.++. -|+
T Consensus 210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPE 286 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPE 286 (557)
T ss_pred HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChH
Confidence 666666666666655555555443333333333333221 1111111110000000011223344443333333 246
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD 669 (676)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 669 (676)
+..++...|..+|+..+|....+ +++|..|.-|...++++.....+
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred hhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhh
Confidence 77888888888888888876653 56788888887777777655443
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.38 E-value=1.6e-11 Score=106.48 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=70.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005808 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (676)
Q Consensus 403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 482 (676)
.+++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555556666555566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 518 (676)
+..++.+|.++...|++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666666666666666555543
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=1.1e-10 Score=106.77 Aligned_cols=185 Identities=15% Similarity=0.127 Sum_probs=94.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (676)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (676)
....+|.+|++++..-.+..|.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+..|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34455666666666555556655555566666666666666666666666666665555555555556666666666555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Q 005808 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (676)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 551 (676)
...+.....-...++..-+-+.+..+++..+....++.- ..+........|.+.++.|+++.|++-|+.+++...-.+
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 544433211112233333444444444444444333211 013334444455555555555555555555555544444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 552 EAWGHLTQFYQDLANSEKALECLQQVL 578 (676)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A~~~~~~al 578 (676)
..-++++.++++.+++..|+++..+.+
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455555555555555555555444443
No 119
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.1e-12 Score=115.85 Aligned_cols=101 Identities=26% Similarity=0.325 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCCh-hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005808 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (676)
Q Consensus 35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 113 (676)
++..-..+++++|..+.|+.||.+|++||-++|+. .+|-|||.||+++.+|+.+..+|++|++++|+.+++++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 33444467899999999999999999999999777 55789999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhccC
Q 005808 114 SALGRKEEALSVWEKGYEHALH 135 (676)
Q Consensus 114 ~~l~~~~~A~~~~~~al~~~~~ 135 (676)
+....+++|+..+++|.++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhc
Confidence 9999999999999999766543
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=2.2e-11 Score=103.15 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=88.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 005808 44 AKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA 122 (676)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A 122 (676)
..++..|+|++|...|.-...++ .++..|.|+|.|+-.+|+|.+|+..|.+|+.++|+++.+++..|.|++.+|+.+.|
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 35789999999999999999999 77777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCChH
Q 005808 123 LSVWEKGYEHALHQSA 138 (676)
Q Consensus 123 ~~~~~~al~~~~~~~~ 138 (676)
.++|+.|+..+-+.|.
T Consensus 123 ~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 123 IKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHHhccChh
Confidence 9999999988744443
No 121
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.36 E-value=1.3e-11 Score=117.35 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--C
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEF----EPN--S 482 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~ 482 (676)
..++-.+|..|+..|+|+.|+..-+.-+.+.... ..++.++|.++.-+|+++.|+++|++.+.+ ... .
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 4677888999999999999998888777664433 347888999999999999999999887643 222 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------c
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------F 550 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 550 (676)
....+.+|..|.-..++++|+.++.+-+.+.. ....+++.+|..+...|..++|+.+.+..++.... .
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sge 354 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGE 354 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchh
Confidence 44677889999999999999999888776532 23567888999999999999998888777665321 1
Q ss_pred HHHHHHHHHHHHHcCCHHH
Q 005808 551 LEAWGHLTQFYQDLANSEK 569 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~ 569 (676)
..+..++...-...|..+.
T Consensus 355 lTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 355 LTARDNLSDLILELGQEDS 373 (639)
T ss_pred hhhhhhhHHHHHHhCCCcc
Confidence 3344455555555555443
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=1.4e-11 Score=113.70 Aligned_cols=120 Identities=25% Similarity=0.343 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
++.+-..|.-++..++|.+|+..|.++|+++|.++..|.+++.+|.++|.++.|++.++.++.++|....+|.++|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45666779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 500 (676)
.+|++++|++.|++++.++|++...+..+..+-...+...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988777776666555544
No 123
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8e-12 Score=115.89 Aligned_cols=103 Identities=24% Similarity=0.241 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-C----ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH
Q 005808 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-Y----EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK 109 (676)
Q Consensus 35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~----~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~ 109 (676)
.|.+-+.+++.+|+.++|..|+.+|+++|... + |...|.|||+|.+.+|||..|+.||.+|+.++|+++++++|=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 56777899999999999999999999999876 3 334499999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 005808 110 GCAFSALGRKEEALSVWEKGYEHALHQS 137 (676)
Q Consensus 110 g~~~~~l~~~~~A~~~~~~al~~~~~~~ 137 (676)
+.|++.+.++++|+...+..+.++-+..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999999999999999988876654433
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=1e-09 Score=108.06 Aligned_cols=153 Identities=20% Similarity=0.164 Sum_probs=117.3
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005808 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (676)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (676)
|....+++..+..++..|++++|+..+...+...|+++..+...+.++...++..+|.+.+++++..+|..+.++.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 66677778888888888888888888888888888888777778888888888888888888888888877777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (676)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 571 (676)
.++..|++.+|+..+...+..+|+++..|..++..|..+|+..++...+ +..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 8888888888888888888778888888888888887777766655443 34455577777777
Q ss_pred HHHHHHHhcC
Q 005808 572 ECLQQVLYID 581 (676)
Q Consensus 572 ~~~~~al~~~ 581 (676)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 7777776654
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.30 E-value=1.2e-10 Score=98.62 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=91.7
Q ss_pred HHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 005808 543 AIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (676)
Q Consensus 543 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 621 (676)
...+. ++..+..+.+|..+...|++++|...|+.+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34455 66777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 622 LYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
++++|.|++..|+.+.|.+.|+.++....+.
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 8888888888888888888888888876443
No 126
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=2.5e-07 Score=93.81 Aligned_cols=268 Identities=13% Similarity=0.174 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH-----HHHHHHHHHcc-------------cHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEAL-----IGRGTARAFQR-------------ELEAAISDFT 439 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~-----~~la~~~~~~g-------------~~~~A~~~~~ 439 (676)
...+..+|..|.+.|.+++|..+|++++..--. ...++ +.-..+...++ +.+-.+..|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 457789999999999999999999999875321 11111 11111111111 2233444455
Q ss_pred HHH------------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHhcCCHHH
Q 005808 440 EAI------------QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE-FEPNS-----ADILHERGIVNFKFKDFNA 501 (676)
Q Consensus 440 ~al------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~~~~~~ 501 (676)
..+ ..+|++..-|.... -+..|+..+-+..|..++. .+|.. ...|..+|..|...|+.+.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 443 34666666665544 4456888888888888875 35533 4588999999999999999
Q ss_pred HHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------------------cHHHHHHHHH
Q 005808 502 AVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------------------FLEAWGHLTQ 559 (676)
Q Consensus 502 A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~ 559 (676)
|...|+++.+..-.. ..+|...|..-....+++.|+.+++.+...-.. +..+|..++.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 999999998875332 467888888888899999999999988754211 2456777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CCHHHHHHHHHHH---HHhcc
Q 005808 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCY---HAIGE 634 (676)
Q Consensus 560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~---~~~g~ 634 (676)
.....|-++.....|++++.+.--.|....+.|..+....-++++.+.|++.+.+.+ .-.++|...-.-+ +.-..
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 888889999999999999998888889999999999999999999999999998864 3345554433322 22236
Q ss_pred HHHHHHHHHHHHhhCC
Q 005808 635 YREAIKDYDAALDLEL 650 (676)
Q Consensus 635 ~~~A~~~~~~al~~~p 650 (676)
.+.|...|++|++..|
T Consensus 566 lEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 566 LERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7899999999999888
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.29 E-value=1.4e-09 Score=107.17 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (676)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 559 (676)
|....+++..+..++..|+++.|+..+...+...|+|+..+...+.++...++..+|.+.+++++...|..+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 005808 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (676)
Q Consensus 560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (676)
++++.|++.+|+..+...+..+|+++..|..+|..|..+|+..+|. ...++.|.-.|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCCHHHHH
Confidence 6666666666666666666666666666666666666666544333 33445555566666666
Q ss_pred HHHHHHHhhC
Q 005808 640 KDYDAALDLE 649 (676)
Q Consensus 640 ~~~~~al~~~ 649 (676)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 6666666554
No 128
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.28 E-value=5.9e-11 Score=115.26 Aligned_cols=234 Identities=16% Similarity=0.073 Sum_probs=179.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAGEAWKRRGQ 457 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~ 457 (676)
..+..+...++++.+|+++..+.-+.. ..+....+...++..+...++-+.++..++..+.... .++.+....|.
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 455677888899999998877655433 2233355666666666554566667766665543322 34556666778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--cHHH
Q 005808 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EYKK 535 (676)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~ 535 (676)
++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+.+.+..-....-+++....| .+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHH
Confidence 888899999999988654 567888889999999999999999999998888877766666777777766 5899
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH-HHHHHHHHHhhcC
Q 005808 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLGI 614 (676)
Q Consensus 536 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 614 (676)
|...|++..+..+..+..+..++.+++.+|++++|...+.+++..+|.++.++.+++.+....|+. +.+.+++.+....
T Consensus 186 A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 186 AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999998888888999999999999999999999999999999999999999999999999988 6677788888888
Q ss_pred CCCCHHH
Q 005808 615 DPSNIEC 621 (676)
Q Consensus 615 ~p~~~~~ 621 (676)
+|+++.+
T Consensus 266 ~p~h~~~ 272 (290)
T PF04733_consen 266 NPNHPLV 272 (290)
T ss_dssp TTTSHHH
T ss_pred CCCChHH
Confidence 9987654
No 129
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.21 E-value=4.2e-06 Score=85.24 Aligned_cols=97 Identities=18% Similarity=0.026 Sum_probs=57.1
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCCh--------hHHHHHHHHHHH---hh---CHHHHHHHHHHH
Q 005808 30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI--------QDICNRAFCYSQ---LE---LHKHVIRDCDKA 95 (676)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~--------~~~~~ra~~~~~---~g---~~~~A~~~~~~a 95 (676)
..+.|.+.++=+ .-+...+++++|...|...+..+.+. ..+...-....+ .+ +++.- .+.-
T Consensus 165 Lk~~P~~~eeyi--e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdai---iR~g 239 (835)
T KOG2047|consen 165 LKVAPEAREEYI--EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAI---IRGG 239 (835)
T ss_pred HhcCHHHHHHHH--HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHH---HHhh
Confidence 355565533333 22357888999999888887654222 222222111111 11 22221 2233
Q ss_pred HHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 96 LQLDPT-LLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (676)
Q Consensus 96 l~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 131 (676)
+..-|+ ....++.++.-|...|.++.|.+.|++++.
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333343 456889999999999999999999999963
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.21 E-value=5.4e-09 Score=99.15 Aligned_cols=181 Identities=17% Similarity=0.127 Sum_probs=128.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~ 452 (676)
.++..++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467888899999999999999999999999999988654 4889999999999999999999999998877 5578
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005808 453 KRRGQARAALGE------------------SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (676)
Q Consensus 453 ~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 514 (676)
+.+|.++...+. ..+|+..|++.++..|+..-+ .+|...+..+-.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence 888877644431 246778888888888876432 111111111100
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQ 576 (676)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~ 576 (676)
.-..--+.+|..|.+.|.|..|+.-++.+++..|+. .+++..++..|...|..++|......
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 001122346677777777777777777777776654 56677777777777777777665544
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.20 E-value=2.4e-09 Score=99.29 Aligned_cols=175 Identities=21% Similarity=0.223 Sum_probs=112.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~ 452 (676)
.++..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.+...|++ ..++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 347889999999999999999999999999988876 6789999999999999999999999999999886 4578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808 453 KRRGQARAALG-----------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (676)
Q Consensus 453 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 521 (676)
+.+|.+++... ...+|+..|+..+...|++..+- +|...+..+-. .-..--+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~ 145 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHH
Confidence 88888766542 23467777777777777653321 11111110000 0011123
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHH
Q 005808 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKA 570 (676)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A 570 (676)
.+|..|.+.|.+..|+..++.+++..|+. ..++..++.+|...|..+.|
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 35566666666666666666666665554 34555666666666665533
No 132
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.20 E-value=3.8e-11 Score=93.89 Aligned_cols=80 Identities=30% Similarity=0.352 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHcccC---ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 005808 49 LRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (676)
Q Consensus 49 ~~~y~~Ai~~y~~ai~~~~---~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~ 125 (676)
+|+|+.|+.+|.++++..| +...++++|.|++++|+|++|+..+++ +..+|.++..++.+|.++.++|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999986 355678899999999999999999999 999999999999999999999999999999
Q ss_pred HHHH
Q 005808 126 WEKG 129 (676)
Q Consensus 126 ~~~a 129 (676)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=7e-11 Score=88.58 Aligned_cols=67 Identities=30% Similarity=0.335 Sum_probs=62.9
Q ss_pred ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 005808 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL 134 (676)
Q Consensus 68 ~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~-~~~~A~~~~~~al~~~~ 134 (676)
++..|.++|.+++.+|+|++|+..|++|++++|+++.+++.+|.+|..+| ++++|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56779999999999999999999999999999999999999999999999 79999999999977665
No 134
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=2.3e-08 Score=116.35 Aligned_cols=285 Identities=15% Similarity=0.061 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--- 448 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--- 448 (676)
+......+..+...|++++|...+..+....+. .......+|.++...|++++|...+++++...+..
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 445567788888999999999999988664221 13445567888899999999999999998854443
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----
Q 005808 449 --GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----- 515 (676)
Q Consensus 449 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----- 515 (676)
..+...+|.++...|++++|...+.+++...... ..++..+|.++...|+++.|...+++++.....
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 2355678888999999999999999998653321 235677899999999999999999998875221
Q ss_pred ---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---
Q 005808 516 ---NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--- 584 (676)
Q Consensus 516 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--- 584 (676)
....+..+|.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++....+..
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 1234557788999999999999999998875321 24556678899999999999999999987653321
Q ss_pred HHHH----HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-----
Q 005808 585 SKAY----HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLELD----- 651 (676)
Q Consensus 585 ~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 651 (676)
.... ......+...|+.+.|..++.......+... ..+..++.++...|++++|...+++++.....
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 1111 1123445568899999999887765433222 22567899999999999999999999886322
Q ss_pred -cHHHHHHHHHHHHH
Q 005808 652 -SMEKFVLQCLAFYQ 665 (676)
Q Consensus 652 -~~~~~~~~~~~~~~ 665 (676)
...++..++.++..
T Consensus 729 ~~a~~~~~la~a~~~ 743 (903)
T PRK04841 729 DLNRNLILLNQLYWQ 743 (903)
T ss_pred HHHHHHHHHHHHHHH
Confidence 12344455555543
No 135
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.17 E-value=3.1e-11 Score=118.57 Aligned_cols=118 Identities=23% Similarity=0.265 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005808 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (676)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 114 (676)
+..-.-++..+|..+.|+.|+..|++||+++| +..++.|||.++++.++|..|+.|+.+||+++|.+.++|+|+|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34445688899999999999999999999995 55568999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 005808 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (676)
Q Consensus 115 ~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~ 153 (676)
+++++-+|+..|++...+.|+.+...+.+.+.+-....-
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888766553
No 136
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.17 E-value=6.7e-10 Score=112.24 Aligned_cols=114 Identities=22% Similarity=0.269 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 462 (676)
-+...|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|++..+++.+|.++..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 36677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 005808 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (676)
|++++|+..|++++.++|+++.+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999888887775554
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.14 E-value=1e-08 Score=97.23 Aligned_cols=182 Identities=15% Similarity=0.052 Sum_probs=129.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 005808 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAY 520 (676)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~ 520 (676)
..+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356667778888888888888888888888888877554 47788888888888888888888888877763 567
Q ss_pred HHHHHHHHHccc------------------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808 521 TYLGLALSSIGE------------------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (676)
Q Consensus 521 ~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 582 (676)
+.+|.++...+. ..+|+..|++.++..|+...+ .+|...+..+. .
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~---~ 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK---D 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH---H
Confidence 777777644431 245667777777777765321 12222111111 0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
.-..--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++.+|..+|..++|.......
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 112224467888999999999999999999888875 478889999999999999998876543
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.13 E-value=5.3e-09 Score=96.99 Aligned_cols=175 Identities=23% Similarity=0.174 Sum_probs=115.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT 521 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~ 521 (676)
....++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35677788888888888888888888888877765 56778888888888888888888888888887764 5677
Q ss_pred HHHHHHHHccc-----------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHH
Q 005808 522 YLGLALSSIGE-----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (676)
Q Consensus 522 ~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 590 (676)
.+|.++..... ..+|+..|+..+...|++..+ .+|...+..+-+ .-..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHHHHHH
Confidence 77777665432 235566666666666654221 122222111110 01223455
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHhccHHHHH
Q 005808 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAI 639 (676)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 639 (676)
+|..|.+.|.|..|+..++.+++..|+.+ +++..++.+|.++|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 78888899999999999999999888865 67888888999998887543
No 139
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.07 E-value=8.1e-07 Score=85.53 Aligned_cols=223 Identities=32% Similarity=0.408 Sum_probs=126.8
Q ss_pred ccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005808 429 RELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVE 504 (676)
Q Consensus 429 g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (676)
+.+..+...+...+...+. ........+..+...+.+..+...+..... ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444444443 244444555555555555555555555554 344445555555555555555555555
Q ss_pred HHHHHHHhCCCCHHHHHHHHH-HHHHcccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 505 DLSACVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (676)
Q Consensus 505 ~~~~al~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (676)
.+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 555555554444333333333 55566666666666666655444 23444444444455666666666666666666
Q ss_pred CcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 581 DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 581 ~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
.+. ....+..++..+...+++..|...+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666 46666666666666666666666666666666665555666666666555667777777777766665
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.06 E-value=5.5e-09 Score=88.28 Aligned_cols=105 Identities=24% Similarity=0.322 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKR 454 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~ 454 (676)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+..|++++..+|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4567777778888888888888888887777665 4677777888888888888888888777777664 556777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005808 455 RGQARAALGESVEAIQDLSKALEFEPNSADI 485 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 485 (676)
+|.++...|++++|+.++++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777777777777777777777776554
No 141
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.05 E-value=6.2e-08 Score=106.11 Aligned_cols=212 Identities=13% Similarity=0.047 Sum_probs=99.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQDLSKA 475 (676)
Q Consensus 401 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (676)
.+.|.+.+..+|+....|......+...++.++|.+.+++++.. ++.. ..+|..+-.+...-|.-+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 34444444445555555554444445555555555555555432 2211 123333333333334444444444444
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHH
Q 005808 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEA 553 (676)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~ 553 (676)
.+... ...++..|..+|...+++++|.++++.+++.......+|..++..++.+++-+.|...+.+|++.-|. +...
T Consensus 1524 cqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1524 CQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 44331 22344444445555555555555555555444444445555555555555445555555555554444 3444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (676)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (676)
....|.+.++.|+.+.+..+|+..+..+|...+.|.-+...-.+.|+.+-+...|++++.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 444444445555555555555555555554444555544444555555555555555443
No 142
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.04 E-value=1.5e-06 Score=83.60 Aligned_cols=224 Identities=29% Similarity=0.351 Sum_probs=195.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005808 394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI 469 (676)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (676)
.+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57788888888888887776 378888899999999999999999999987 67888889999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 005808 470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (676)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (676)
..+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988777555556666 89999999999999999988766 3456666677778889999999999999999
Q ss_pred cCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808 546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 546 ~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (676)
..+. ....+..++..+...+++..|...+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999 68999999999999999999999999999999987777888888888778899999999999999887
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.04 E-value=5.3e-09 Score=88.38 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYL 624 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 624 (676)
+..++.+|..+...|++++|+..|.+++...|++ +.+++.+|.++...|++++|+..|+.++...|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3566777888888888888888888888777765 4677788888888888888888888888877764 567888
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 625 RASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
+|.++..+|++++|..+++++++..|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 8888888888888888888888888887654
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.7e-07 Score=83.02 Aligned_cols=258 Identities=15% Similarity=0.037 Sum_probs=192.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (676)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 466 (676)
-.+.++..|+|..++..-.+.-.. +....-...+.+.|..+|++...+......- .....+...++.+...-++.+
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhH
Confidence 345677789999998887766443 3667788888999999998876655443321 222344555566555556666
Q ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 467 EAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (676)
Q Consensus 467 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (676)
.-+..+.+.+... ..+......-|.++...|++++|++..... .+.++...-..++.++.+.+-|...++++.
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444322 223345666788899999999999988763 445666666788899999999999999999
Q ss_pred hcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808 545 QLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (676)
Q Consensus 545 ~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (676)
+++.+. .+..+|..+.. .+++.+|.-+|+..-+..|..+.....++.++..+|+|++|...++.++..++++++
T Consensus 165 ~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 165 QIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred ccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 886553 34444444433 456889999999999888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccHHHH-HHHHHHHHhhCCCcHHH
Q 005808 621 CLYLRASCYHAIGEYREA-IKDYDAALDLELDSMEK 655 (676)
Q Consensus 621 ~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~ 655 (676)
.+.++..+-...|...++ .+++.+.....|+++-.
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 999999999999987665 45667777778887654
No 145
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.4e-09 Score=92.60 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHc------------------cc-CChhHHHHHHHHHHHhhCHHHHHHHHH
Q 005808 33 MASAITARIELAKLCSLRNWSKAIRILDSLLA------------------QS-YEIQDICNRAFCYSQLELHKHVIRDCD 93 (676)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~------------------~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~ 93 (676)
|-....-|.+++++|..|+|.+|+.+|..||- ++ .....+.|.+.|++..|+|-+++..|.
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 33334556889999999999999999999953 22 333447899999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 005808 94 KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD 139 (676)
Q Consensus 94 ~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~ 139 (676)
..|..+|++++|||++|.++..-=+.++|...|.++|+++|.-...
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999998888765544
No 146
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=5e-08 Score=85.45 Aligned_cols=199 Identities=19% Similarity=0.145 Sum_probs=142.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 457 (676)
...+..++.+|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+++.|.+.|...++++|...-++.+.|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 34467888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (676)
.++.-|++.-|.+.+.+..+.+|++|---..+- +-...-++.+|...+.+-.+...+....|...+. .+|+..+ .
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS~-e 216 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKISE-E 216 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhccH-H
Confidence 999999999999999999999998874211111 1122336677766555433333222222322221 2222211 1
Q ss_pred HHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808 538 EAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (676)
Q Consensus 538 ~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 581 (676)
..++++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2233333322222 5677888888888888888888888777554
No 147
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.8e-09 Score=95.99 Aligned_cols=119 Identities=24% Similarity=0.218 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 005808 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSS 610 (676)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 610 (676)
+..+.-++.-+..+|++.+.|..+|.+|+.+|++..|...|.+++++.|+++..+..+|.++.... ...++...+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 333444455555566666666666666666666666666666666666666666666655554432 33455666666
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
++..+|+++.+.+.||..++..|+|.+|...++..++..|.+
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 666666666666666666666666666666666666655544
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.00 E-value=1.6e-09 Score=81.09 Aligned_cols=67 Identities=30% Similarity=0.530 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCC
Q 005808 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG-EYREAIKDYDAALDLEL 650 (676)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 650 (676)
++..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46778888888888888888888888888888888888888888888888 78888888888888887
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.99 E-value=1.6e-09 Score=80.00 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 005808 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (676)
Q Consensus 73 ~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~ 137 (676)
+.+|..+++.|+|++|+..+++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36789999999999999999999999999999999999999999999999999999988888754
No 150
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.99 E-value=2.9e-07 Score=101.03 Aligned_cols=234 Identities=13% Similarity=0.102 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 005808 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNSA----DILHERGIVNFKFKDFNAAVED 505 (676)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~----~~~~~la~~~~~~~~~~~A~~~ 505 (676)
-.+..+.|++.+..+|+..-.|..+.......++.++|.+.+++++.. ++... .+|..+-.+...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788888999999999999999999999999999999999864 44332 3555555555666777778888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--
Q 005808 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-- 583 (676)
Q Consensus 506 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-- 583 (676)
|+++.+... ...++..|..+|...+++++|.++|+.+++...+...+|..++..++++++-+.|...+.+|++.-|.
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 888887643 35678888999999999999999999999988888999999999999999999999999999998886
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCcHHHHHHHHH
Q 005808 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL--ELDSMEKFVLQCL 661 (676)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 661 (676)
+.......|.+-++.|+.+.+...|+-.+..+|...+.|..+...-.+.|+.+.+...|++++.+ .|.....++...+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 67888888999999999999999999999999999999999999999999999999999999875 4555555666555
Q ss_pred HHHH
Q 005808 662 AFYQ 665 (676)
Q Consensus 662 ~~~~ 665 (676)
.|-.
T Consensus 1679 eyEk 1682 (1710)
T KOG1070|consen 1679 EYEK 1682 (1710)
T ss_pred HHHH
Confidence 5543
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.99 E-value=3.4e-08 Score=86.31 Aligned_cols=128 Identities=18% Similarity=0.156 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR 455 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l 455 (676)
...+..+...+..++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344555555567888888888888888888887 5567778888888888888888888888876554 3467778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (676)
+.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888888888888888865 33344456677778888888888888888887763
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.1e-08 Score=93.86 Aligned_cols=119 Identities=26% Similarity=0.311 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 005808 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSA 508 (676)
Q Consensus 432 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~ 508 (676)
+..+.-++.-+..+|++.+.|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.+++... ...++...+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555555555555555555544332 23455555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Q 005808 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (676)
Q Consensus 509 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 550 (676)
++..+|.+..+.+.+|..++..|+|.+|...++..++..|.+
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 555555555555555555555555555555555555554443
No 153
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=7.6e-08 Score=84.34 Aligned_cols=196 Identities=18% Similarity=0.183 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (676)
+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|...-+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 55677788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (676)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 574 (676)
--|++.-|.+.+.+..+.+|+++.--..+-.. ...-+..+|..-+.+-.+...+.-..|...+. | .|+..+ ...+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~-y--LgkiS~-e~l~ 219 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF-Y--LGKISE-ETLM 219 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH-H--HhhccH-HHHH
Confidence 99999999999999999999987433222222 22335666665544433322222222222221 1 232211 1223
Q ss_pred HHHHhcCcCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 005808 575 QQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (676)
Q Consensus 575 ~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (676)
+++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3333222222 4578888999999999999999988888754
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.98 E-value=8.9e-09 Score=82.90 Aligned_cols=99 Identities=29% Similarity=0.489 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 005808 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (676)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (676)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777788888888888887777777777777888888888888888888888887777777788888888888
Q ss_pred ccHHHHHHHHHHHHhhCCC
Q 005808 633 GEYREAIKDYDAALDLELD 651 (676)
Q Consensus 633 g~~~~A~~~~~~al~~~p~ 651 (676)
|++++|..++.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888777663
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=98.98 E-value=5.2e-08 Score=96.92 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHhCCC
Q 005808 383 FRLSRGIAQVNEGK---YASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPS 447 (676)
Q Consensus 383 ~~~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~ 447 (676)
.++.+|...+..+. .+.|+.+|.+++ ..+|..+.++..++.|++.. ....+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 45788888776654 567888999999 88999999999999888764 2355678888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA- 526 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~- 526 (676)
++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|....+-...-.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888765544433333
Q ss_pred HHHcccHHHHHHHHHHH
Q 005808 527 LSSIGEYKKAEEAHLKA 543 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~a 543 (676)
.+-....++|+..|-+-
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 417 MYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHcCCchhhhHHHHhhc
Confidence 44445566777666543
No 156
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.97 E-value=2e-08 Score=80.25 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=93.8
Q ss_pred HHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHcCCHH
Q 005808 46 LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILKGCAFSALGRKE 120 (676)
Q Consensus 46 ~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~~g~~~~~l~~~~ 120 (676)
+-..|+.+.|++.|.++|.+. .++..|.|||.++.-+|+-++|+.++++|+++...-.. +|+.+|.+|..+|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 456899999999999999999 77888999999999999999999999999999866444 9999999999999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 005808 121 EALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (676)
Q Consensus 121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~ 153 (676)
.|...|+.|-.+. .+.+..++++++|--..+
T Consensus 133 ~AR~DFe~AA~LG--S~FAr~QLV~lNPYAAlC 163 (175)
T KOG4555|consen 133 AARADFEAAAQLG--SKFAREQLVELNPYAALC 163 (175)
T ss_pred HHHHhHHHHHHhC--CHHHHHHHHhcChHHHHH
Confidence 9999999997664 556788889999875543
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.97 E-value=2.6e-08 Score=104.81 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHcCCHH
Q 005808 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHK 602 (676)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~ 602 (676)
...|+.+|+++++.+|++..++-.++.++... .+...+.....+++.. .+.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 45556666666666666655555555544332 1234555555565553 6667788888888888889999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (676)
+|...+++++.++|+ ..+|..+|.++...|++++|+..|++|+.++|.++..+..-.++++-
T Consensus 438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~~ 499 (517)
T PRK10153 438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVFQT 499 (517)
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccccc
Confidence 999999999999984 78899999999999999999999999999999988755544444443
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.96 E-value=2.7e-08 Score=97.65 Aligned_cols=194 Identities=21% Similarity=0.169 Sum_probs=122.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CC----HHHHHHH
Q 005808 456 GQARAALGESVEAIQDLSKALEFEP--NS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDK--EN----KSAYTYL 523 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~----~~~~~~l 523 (676)
|..|...|++++|...|.++....- .+ ...+...+.++... ++++|+.++++++.+.. +. ...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4455555556666555555543321 11 22344445554444 77777777777766521 11 3456678
Q ss_pred HHHHHHc-ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-------cHHHHH
Q 005808 524 GLALSSI-GEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-------FSKAYH 589 (676)
Q Consensus 524 a~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~ 589 (676)
|.+|... |++++|+++|+++.+..... ...+..+|.++...|+|++|++.|+++....-+ ....+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 8888888 88999999999888764322 456778899999999999999999988764321 123456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHH--HhccHHHHHHHHHHHHhhCC
Q 005808 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-----ECLYLRASCYH--AIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p 650 (676)
..+.+++..|++..|...+++....+|... .+...+-.++. ....+.+|+..|....+++|
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 778889999999999999999998887532 33344444443 23458888888887777665
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.96 E-value=3.1e-08 Score=89.48 Aligned_cols=120 Identities=23% Similarity=0.272 Sum_probs=79.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (676)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 453 (676)
.+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34456667777777777777888777777777665543 356777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005808 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (676)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (676)
.+|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 777777777666555544444332 2455666666666665554
No 160
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.96 E-value=4.3e-06 Score=80.12 Aligned_cols=261 Identities=19% Similarity=0.126 Sum_probs=202.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 458 (676)
.+-+++.-++..+..|+++.|.+-|+.++. +|.. .-.+..+-.-....|..+.|+.+-+.+....|.-..++...-..
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 367788889999999999999999998875 3432 22223333344568999999999999999999999998888888
Q ss_pred HHHcCCHHHHHHHHHHHHhc---CCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005808 459 RAALGESVEAIQDLSKALEF---EPNSAD-----ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~---~p~~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 530 (676)
.+..|+|+.|+++.+..... .++..+ .+...+... -.-+...|.....++.++.|+....-..-+..++..
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d 276 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRD 276 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence 89999999999999876543 222211 122222222 234688899999999999999998888899999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH---HHhcCcCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ---VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (676)
Q Consensus 531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~---al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (676)
|+..++-.+++.+.+..|. +. ++..|....--+.++.-+++ ...+.|++.......+...+.-|++..|..-
T Consensus 277 ~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 277 GNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred cchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999999998876 33 23344433333344444444 4457889999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhh
Q 005808 608 LSSGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDL 648 (676)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 648 (676)
-+.+....|. ..++..++.+-... |+-.++..++-++++-
T Consensus 352 Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 352 AEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999999998 67788888888766 9999999999999874
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.94 E-value=5.6e-08 Score=84.97 Aligned_cols=117 Identities=22% Similarity=0.121 Sum_probs=81.3
Q ss_pred HcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHK 602 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~ 602 (676)
..++...+...++..+...|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+...+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4666666766777777777766 4556667777777777777777777777766443 345667777777777777
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005808 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (676)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (676)
+|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 777777552 3333445677777778888888888877777764
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=3.5e-08 Score=89.15 Aligned_cols=118 Identities=20% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005808 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489 (676)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 489 (676)
....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345567777777777777777777777777665543 34666777777777777777777777777777766666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Q 005808 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (676)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 550 (676)
|.++...|+...+...+..++. .+.+|+.++++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 7777666666665544444332 2556666666666666654
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.93 E-value=1.6e-08 Score=81.37 Aligned_cols=98 Identities=28% Similarity=0.402 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 462 (676)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+.+++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35566666666777777777777777666666666666777777777777777777776666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 005808 463 GESVEAIQDLSKALEFEP 480 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~p 480 (676)
|+++.|...+.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 666666666666666554
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.93 E-value=7.6e-08 Score=101.29 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHh--CCC
Q 005808 381 VDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQR--------ELEAAISDFTEAIQS--NPS 447 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~~~ 447 (676)
+..++..|..++..++ +..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.. +|.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 3445666766665544 667777777777777777777777666654432 223333333443332 344
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (676)
++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..+++++.++|.++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 445555555555555555555555555555555 344555555555555555555555555555555544
No 165
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.93 E-value=2.3e-07 Score=87.71 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCc--HHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSN----PSA--GEA 451 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~--~~~ 451 (676)
+...+..|..++...++++|+....+.+..-.+. ...+-.+..+...+|.|++++.+--..+... ... .++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888999999999999999998754433 3345556677888888888776554443322 111 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHH
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~ 520 (676)
+.++++.+....++.+++.+-...+...... ..+...++..+..++.++++++.|+.+++...++. .++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 8889999999999999999888777664332 35677799999999999999999999998754332 467
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------cCc
Q 005808 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRF 584 (676)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~ 584 (676)
..+|..+....++++|.-+..++.++.... .-+++.++..+..+|..-.|.++.+++.++. +-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 889999999999999999999998774321 3466788999999999999999999987653 233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHhccHHH-----HHHHHHHHHhhCCC
Q 005808 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYRE-----AIKDYDAALDLELD 651 (676)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~ 651 (676)
......+|.+|...|+.+.|..-|+.+...-.. ...++...+.++....-..+ |++.-++++++...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 456778999999999999999999999865321 23566666666665544444 78877777776543
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.92 E-value=5.9e-09 Score=76.91 Aligned_cols=64 Identities=31% Similarity=0.408 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (676)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (676)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5788888889999999999999988888888999999999999999999999999988888875
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.91 E-value=1.1e-07 Score=93.43 Aligned_cols=195 Identities=15% Similarity=0.115 Sum_probs=116.0
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHH
Q 005808 422 GTARAFQRELEAAISDFTEAIQSNP--SA----GEAWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHER 489 (676)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~~--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l 489 (676)
|.+|...|++++|...|.++....- ++ ...+...+.++... ++++|+.++++++.+.-. . ..++..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4444455555555555555543211 00 22333444444444 677777777776655211 1 3467778
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHH
Q 005808 490 GIVNFKF-KDFNAAVEDLSACVKLDKE--N----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWG 555 (676)
Q Consensus 490 a~~~~~~-~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 555 (676)
|.+|... |++++|+++|++++..... . ...+..+|.++...|+|++|+..|+++....-++ ...++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 8888888 8888888888888876321 1 2456678888888889999998888887643211 23456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcCcH-----HHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCC
Q 005808 556 HLTQFYQDLANSEKALECLQQVLYIDKRFS-----KAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 556 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~ 617 (676)
..+.+++..|++..|...+++....+|... .+...+-.++.. ...+..|+..|....++++-
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 677788888899899888888888777432 233334444433 44677777777777666543
No 168
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.89 E-value=1.8e-09 Score=100.69 Aligned_cols=226 Identities=18% Similarity=0.109 Sum_probs=146.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 463 (676)
+-..|..|+.+|.|++|+.+|.+.+..+|.++..+.+.+.+|++...|..|...+..++.++.....+|.+.+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH---------HHHHHHHHcccHH
Q 005808 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT---------YLGLALSSIGEYK 534 (676)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~la~~~~~~g~~~ 534 (676)
+..+|.+.++.++.+.|++.+....++.+-. ..++ +-+.+..|....+.. .-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999999999999998776655554432 1111 111222222221111 1234444455555
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
.++.++...+.....+...-.+ +..|....+++.++.-..+++...|.........+.+-.-.|...++...++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 5555554444333222222222 334444445555555554544444433333333333333334444555555555555
Q ss_pred CCCC
Q 005808 615 DPSN 618 (676)
Q Consensus 615 ~p~~ 618 (676)
.|.+
T Consensus 331 ~P~~ 334 (536)
T KOG4648|consen 331 APAV 334 (536)
T ss_pred cccc
Confidence 4443
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.89 E-value=4.5e-08 Score=88.16 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHH
Q 005808 395 GKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAI 469 (676)
Q Consensus 395 g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~ 469 (676)
+.|..+...+...++..+.. ..+++.+|.++...|++++|+..|++++.+.|+. ..++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555554444443 4556777777777777777777777777665542 346677777777777777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 005808 470 QDLSKALEFEPNSADILHERGIVNFKF 496 (676)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (676)
..+++++...|.....+..+|.++...
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 777777777777766666666666633
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.89 E-value=6.5e-09 Score=81.16 Aligned_cols=81 Identities=27% Similarity=0.369 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808 394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (676)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (676)
+|+|+.|+..++++++.+|. +...++.+|.+++..|++++|+..+++ ...+|.+...++.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56777777777777777774 355566677777777777777777777 666666667777777777777777777777
Q ss_pred HHHH
Q 005808 472 LSKA 475 (676)
Q Consensus 472 ~~~a 475 (676)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7653
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=98.89 E-value=1.8e-07 Score=93.23 Aligned_cols=158 Identities=12% Similarity=0.033 Sum_probs=108.7
Q ss_pred HHHHHHHHHcc---cHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q 005808 419 IGRGTARAFQR---ELEAAISDFTEAI---QSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSA 483 (676)
Q Consensus 419 ~~la~~~~~~g---~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 483 (676)
+..|......+ ..+.|+.+|.+++ .++|+...++..++.+++.. ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 56666665554 3567888899999 88888888888888887654 234566777777777777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HH
Q 005808 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQ 562 (676)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 562 (676)
.++..+|.+....++++.|...|++++.++|+.+.+|+..|.+....|+.++|.+.++++++++|.-..+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777654332222222 22
Q ss_pred HcCCHHHHHHHHHH
Q 005808 563 DLANSEKALECLQQ 576 (676)
Q Consensus 563 ~~~~~~~A~~~~~~ 576 (676)
-....+.|+..|-+
T Consensus 419 ~~~~~~~~~~~~~~ 432 (458)
T PRK11906 419 VPNPLKNNIKLYYK 432 (458)
T ss_pred cCCchhhhHHHHhh
Confidence 23445556655544
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=98.88 E-value=4.7e-08 Score=83.38 Aligned_cols=120 Identities=7% Similarity=0.058 Sum_probs=87.1
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
..+.++..+..+..|.-+...|++++|...|+-+.-.+|.++..|..+|.++...++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 33445556667777777777888888888887777777777777888888888888888888888888777777788888
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (676)
..|.||..+|+.+.|+..|+.+++ .|.+.. ....+..++.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~-l~~~A~~~L~ 149 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE-RTEDES-LRAKALVYLE 149 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh-CcchHH-HHHHHHHHHH
Confidence 888888888888888888887777 454433 2333444443
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.87 E-value=5.1e-08 Score=87.80 Aligned_cols=104 Identities=18% Similarity=0.123 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (676)
...++.+|.++...|++++|+..|++++...|+ .+.++.++|.++...|++++|+..+++++...|.....+..+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666666666666666666666655443 23356666666666666666666666666666666666666666
Q ss_pred HHH-------HhccHH-------HHHHHHHHHHhhCCCcHH
Q 005808 628 CYH-------AIGEYR-------EAIKDYDAALDLELDSME 654 (676)
Q Consensus 628 ~~~-------~~g~~~-------~A~~~~~~al~~~p~~~~ 654 (676)
++. .+|+++ +|..+|++++..+|++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 655 555544 777777888888987643
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=98.86 E-value=6.1e-08 Score=82.70 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=98.5
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 005808 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (676)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (676)
+..+....+...+..+..|..++..|++++|..+|+-+.-.+|.+++.|..+|.++..+++|++|+..|..+..++++++
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 34445556666788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005808 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (676)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 482 (676)
...+..|.|++.+|+.+.|+..|..++. .|.+
T Consensus 106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred CccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999999999999999888 3443
No 175
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.9e-06 Score=78.47 Aligned_cols=239 Identities=15% Similarity=0.045 Sum_probs=173.8
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 005808 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (676)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 501 (676)
.+-++..|+|..++...++.-... ........+.+.|..+|++...+......- .....+...++.....-++.+.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 455677899999988777654433 667777888999999998876655443322 1223455566666666666666
Q ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 502 AVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (676)
Q Consensus 502 A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 579 (676)
-+..+.+.+.... .+......-|.++...|++++|+...... .+.++...-..++.+..+.+-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6665555444322 23344555678899999999999988763 3455666667788889999999999999988
Q ss_pred cCcCcHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 580 IDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 580 ~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
++.+..-....-+++-.. .+.+.+|.-+|+..-+..|..+.....++.+...+|+|++|...++.++..++++++...
T Consensus 166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 876543332333333333 347899999999999977778999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhhh
Q 005808 658 LQCLAFYQVLFD 669 (676)
Q Consensus 658 ~~~~~~~~~~~~ 669 (676)
++..+-.-...+
T Consensus 246 Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 246 NLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHhCCC
Confidence 877665544443
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.84 E-value=1.4e-07 Score=89.97 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=93.2
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHH
Q 005808 380 SVDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (676)
Q Consensus 380 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~ 452 (676)
.....|..|..+ +..|+|++|+..|+..++.+|++ +.+++.+|.+++..|++++|+..|.+++..+|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 356677777776 56799999999999999999988 5799999999999999999999999999888874 7788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 005808 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADI 485 (676)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 485 (676)
+.+|.++...|++++|...|+++++..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 899999999999999999999999999987654
No 177
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.82 E-value=5.2e-07 Score=85.32 Aligned_cols=262 Identities=18% Similarity=0.149 Sum_probs=194.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHH
Q 005808 386 SRGIAQVNEGKYASAISIFDQILKE----DPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKR 454 (676)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~ 454 (676)
.+..+....|.|++++..--..+.. ... ..+++.+++..+....++.+++.+....+.+.... ..+...
T Consensus 48 ~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~ 127 (518)
T KOG1941|consen 48 CLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLS 127 (518)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhh
Confidence 4456667778888877654443332 211 25678899999999999999999988887764333 356777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----C------HH
Q 005808 455 RGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----N------KS 518 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~------~~ 518 (676)
++.++..++.++++++.|+.++.....+ ..++..+|.++....++++|+-+..++..+... + ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 9999999999999999999999874433 247889999999999999999999999876432 2 24
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------CcHH
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSK 586 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~ 586 (676)
+++.++..+..+|..-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|+.+..... ....
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~ 287 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVE 287 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 56778999999999999999999988764 23356678899999999999999999999976432 1234
Q ss_pred HHHHHHHHHHHcCCHHH-----HHHHHHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 587 AYHLRGLLLHGLGQHKK-----AIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 587 ~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
++...|.++....-..+ |++.-++++++...- ...+..++.+|..+|.-++=...+.++-+
T Consensus 288 al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 288 ALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 55566666655444444 777777777654321 25678899999988887776666665544
No 178
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1e-07 Score=92.48 Aligned_cols=147 Identities=27% Similarity=0.275 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q 005808 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (676)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 564 (676)
.....|..|++.|+|..|...|++++..-..... -+.++.... .++ -..++.+++.++.++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~------------~~~ee~~~~--~~~-----k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS------------FDEEEQKKA--EAL-----KLACHLNLAACYLKL 270 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc------------CCHHHHHHH--HHH-----HHHHhhHHHHHHHhh
Confidence 3456678888888888888888887765321100 000111000 000 135678888999999
Q ss_pred CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH-HHHHH
Q 005808 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDYD 643 (676)
Q Consensus 565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~ 643 (676)
++|.+|+....+++..+|++..+++..|.++...|+|+.|+..|++++++.|+|..+...+..+-.+..++.+. .+.|.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888777666544 67777
Q ss_pred HHHhhCC
Q 005808 644 AALDLEL 650 (676)
Q Consensus 644 ~al~~~p 650 (676)
..+..-+
T Consensus 351 ~mF~k~~ 357 (397)
T KOG0543|consen 351 NMFAKLA 357 (397)
T ss_pred HHhhccc
Confidence 7776544
No 179
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.81 E-value=2.4e-09 Score=100.46 Aligned_cols=106 Identities=22% Similarity=0.303 Sum_probs=97.8
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHH
Q 005808 30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108 (676)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 108 (676)
+..|.-+...|.+..+++..|++++||+.|+++|+++ ++...|.+||.+++++++...|+++|..|++++|+.++.|-.
T Consensus 108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 4566677788899999999999999999999999999 667779999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccC
Q 005808 109 KGCAFSALGRKEEALSVWEKGYEHALH 135 (676)
Q Consensus 109 ~g~~~~~l~~~~~A~~~~~~al~~~~~ 135 (676)
+|.+...+|+|++|...|..+..++-+
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999766543
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.79 E-value=1.1e-07 Score=90.76 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=80.8
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHH
Q 005808 551 LEAWGHLTQFY-QDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLY 623 (676)
Q Consensus 551 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 623 (676)
...++..+..+ ...|++++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|+++++.+|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45555555554 45678888888888888888776 4678888888888888888888888888776664 57788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
.+|.++..+|++++|...|+++++..|++..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 88888888888888888888888888887654
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.76 E-value=5.3e-06 Score=76.19 Aligned_cols=181 Identities=16% Similarity=0.183 Sum_probs=120.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EA 451 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~ 451 (676)
...+..++..|...+..|+|++|+..|+.+....|.. ..+...++.+++..++++.|+..+++-+.+.|.++ .+
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4458899999999999999999999999999888765 56889999999999999999999999999988774 46
Q ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005808 452 WKRRGQARAALG--------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (676)
Q Consensus 452 ~~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 523 (676)
++..|.+++..= -..+|+..|+..+...|++.-+-..... +..+...+ ..--..+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~I 173 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAI 173 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHH
Confidence 666777755431 2356677777777777765321110000 00000000 1112235
Q ss_pred HHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 524 GLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQ 575 (676)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~ 575 (676)
|..|.+.|.+-.|+..++.+++..|+. ..++..+..+|...|-.++|...-.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 666666666666666666666665443 4455666666666666666655443
No 182
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.6e-05 Score=83.23 Aligned_cols=243 Identities=17% Similarity=0.088 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQI----------LKEDP----------MYPEALIGRGTARAFQRELEAAISDFTEA 441 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (676)
..++..|..+...++.+.|+++|+++ +..+| .++..|...|..+...|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 35566666677777777777777764 22233 22445566677777777777777777765
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCC
Q 005808 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL------DKE 515 (676)
Q Consensus 442 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~ 515 (676)
-. |+.+.++..-+|+.++|-...++ ..+..+.+.+|..|...|++.+|+.+|.++-.. ...
T Consensus 939 ~D--------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKE 1005 (1416)
T KOG3617|consen 939 KD--------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKE 1005 (1416)
T ss_pred hh--------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 55666666777777777665543 245566777888888888888888777766432 111
Q ss_pred CHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCc-
Q 005808 516 NKSAYTYLGLALSSIG--EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV----------LYIDK- 582 (676)
Q Consensus 516 ~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~~- 582 (676)
+. .--.++.+....| +.-.|..+|++. +.....-..+|.+.|.+.+|++..-+. -.++|
T Consensus 1006 nd-~~d~L~nlal~s~~~d~v~aArYyEe~-------g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 ND-MKDRLANLALMSGGSDLVSAARYYEEL-------GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred cC-HHHHHHHHHhhcCchhHHHHHHHHHHc-------chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 10 0001111111111 112222222221 001111223344444444444432111 11233
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHH------hhcC----------------CCC---------CHHHHHHHHHHHHH
Q 005808 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSS------GLGI----------------DPS---------NIECLYLRASCYHA 631 (676)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~----------------~p~---------~~~~~~~la~~~~~ 631 (676)
.++..+..-+..+....+|++|+..+-. ++++ .|. ...++..+|.++.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 4566666777777777777777765433 3221 111 12577889999999
Q ss_pred hccHHHHHHHHHHH
Q 005808 632 IGEYREAIKDYDAA 645 (676)
Q Consensus 632 ~g~~~~A~~~~~~a 645 (676)
+|.|..|-+-|.+|
T Consensus 1158 QG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQA 1171 (1416)
T ss_pred ccchHHHHHHHhhh
Confidence 99999888877765
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.73 E-value=1.9e-05 Score=83.76 Aligned_cols=229 Identities=14% Similarity=0.028 Sum_probs=157.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005808 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468 (676)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 468 (676)
.-....+++.+|+..+.+.++..|+...+....|.++.+.|+.++|..+++..-...+++...+-.+-.+|..+|++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567789999999999999999999999999999999999999999888777777788888888899999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcccHH---------HHHH
Q 005808 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL-GLALSSIGEYK---------KAEE 538 (676)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-a~~~~~~g~~~---------~A~~ 538 (676)
..+|++++..+|. .+....+-.+|.+.+.|.+-.+..-+..+..|+++..+... ..++......+ -|..
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999999998 78888888888888888887777777777888887544443 33333333222 2333
Q ss_pred HHHHHHhcC-ccc-HHHHHHHHHHHHHcCCHHHHHHHHHH-HH-hcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 539 AHLKAIQLD-RNF-LEAWGHLTQFYQDLANSEKALECLQQ-VL-YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 539 ~~~~al~~~-p~~-~~~~~~la~~~~~~~~~~~A~~~~~~-al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
..++.++.. +-. ..-....-.++..+|++++|.+.+.. .. ...+.+...-......+...+++.+-.+...+++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 444444433 111 11112222344456666666666622 22 222333333344455556666666666666666666
Q ss_pred CCCC
Q 005808 615 DPSN 618 (676)
Q Consensus 615 ~p~~ 618 (676)
.+++
T Consensus 256 ~~Dd 259 (932)
T KOG2053|consen 256 GNDD 259 (932)
T ss_pred CCcc
Confidence 6654
No 184
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.73 E-value=1.3e-05 Score=85.12 Aligned_cols=215 Identities=14% Similarity=0.031 Sum_probs=157.2
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (676)
....+.+..|+...+....|..+.+.|++++|..+++..-...+++...+-.+-.+|..+|++++|...|++++..+|.
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~- 109 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS- 109 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-
Confidence 3456677889999999999999999999999998888777777888888888999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHhcCCHH---------HHHHHHHHHHHhC-CCCH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER-GIVNFKFKDFN---------AAVEDLSACVKLD-KENK 517 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~~~~~---------~A~~~~~~al~~~-~~~~ 517 (676)
.+....+-.+|.+.+.|.+-.+.--+..+..|.++..+... ..+.......+ -|...+++.++.. +-..
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s 189 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIES 189 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccch
Confidence 77777788888888888877777777777888876644444 33333333322 3444555555554 2211
Q ss_pred -HHHHHHHHHHHHcccHHHHHHHHHH--HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc
Q 005808 518 -SAYTYLGLALSSIGEYKKAEEAHLK--AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (676)
Q Consensus 518 -~~~~~la~~~~~~g~~~~A~~~~~~--al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 584 (676)
.-....-.++..+|++++|...+.. +-...+.+...-......+...+++.+-.+...+++...+++
T Consensus 190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 1123344566778899999998843 223344445555566777888899999999988888888876
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.72 E-value=3.3e-07 Score=92.06 Aligned_cols=124 Identities=16% Similarity=0.046 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q 005808 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567 (676)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 567 (676)
.+..++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3445555667888888888887777654 5556777877778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
+.|+.+.+++.+..|++...|..++.+|...|+++.|+..+..+--.
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 88888888888888888888888888888888888888777755444
No 186
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.70 E-value=4.7e-07 Score=90.99 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=76.9
Q ss_pred HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 005808 423 TARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (676)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 502 (676)
.++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344456666666666666665543 4445666666666666666666666666666666666666666666666777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (676)
Q Consensus 503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (676)
+...++++...|.+...|..|+.+|...|+++.|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 77777766666666666666677777667766666665543
No 187
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.68 E-value=7.5e-06 Score=75.20 Aligned_cols=189 Identities=19% Similarity=0.083 Sum_probs=126.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT 521 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~ 521 (676)
.+..++.-|...+..|++++|+..|+.+....|.. ..+...++..+++.+++++|+..+++.+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45677788888888888888888888888777655 44677778888888888888888888888877664 3455
Q ss_pred HHHHHHHHc--------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 005808 522 YLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (676)
Q Consensus 522 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (676)
..|.++... .-..+|+..++..++..|++.-+- .|...+..+. .....--..+|.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~--------------dA~~~i~~~~---d~LA~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP--------------DAKARIVKLN---DALAGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh--------------hHHHHHHHHH---HHHHHHHHHHHH
Confidence 566665432 113455666666666666653221 1111111110 001222345788
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808 594 LLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (676)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (676)
.|.+.|.+..|+.-++.+++..|+.. +++..+..+|..+|-.++|.+.-.-.-...|++.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 89999999999999999998877653 6788888899999999998776544444444443
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.67 E-value=3.2e-07 Score=76.58 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=83.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcccCChhH----HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh---HHHHHHHHHH
Q 005808 42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ---AYILKGCAFS 114 (676)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~~g~~~~ 114 (676)
++-.++..|+|++|+..|+......|.... ...++.+|++.|+|++|+..+++-|+++|++++ ++|++|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 345679999999999999987666554433 689999999999999999999999999999988 9999999999
Q ss_pred HcCC---------------HHHHHHHHHHHHhhccCCh
Q 005808 115 ALGR---------------KEEALSVWEKGYEHALHQS 137 (676)
Q Consensus 115 ~l~~---------------~~~A~~~~~~al~~~~~~~ 137 (676)
.+.. ..+|...|++.+...|+..
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9988 8899999999987777765
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.67 E-value=9.9e-08 Score=72.29 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=52.1
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 005808 76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD 139 (676)
Q Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~ 139 (676)
+.+|++.++|++|+..+++++.++|+++.+++.+|.++..+|++++|+.+|+++++.+|+.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567888888888888888888888888888888888888888888888888888777766544
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.65 E-value=4.9e-05 Score=73.14 Aligned_cols=265 Identities=17% Similarity=0.090 Sum_probs=201.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARA 460 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~ 460 (676)
-+..|.+....|+-..|.+.-.+.-+.-..+ +.++..-+..-...|+++.|.+-|+.++. +|.. .-.+..+-.-..
T Consensus 87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq 165 (531)
T COG3898 87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence 3456777777899999999988876543333 56667778888899999999999998775 3332 223333444446
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHHH-HHcccH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---DKENK---SAYTYLGLAL-SSIGEY 533 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~---~~~~~la~~~-~~~g~~ 533 (676)
..|..+.|+.+.+++....|.-+.++...-...+..|+|+.|++..+..... .++-. .+-..-+... ....+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 7899999999999999999999999998888999999999999999876543 22211 1111122222 223468
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH---H
Q 005808 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS---S 610 (676)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---~ 610 (676)
..|...-.+++++.|+....-..-+..++..|+..++-.+++.+.+..|. +.++. ..++.+.|+. ++.-++ +
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCCc--HHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999998885 44332 2334455544 444444 4
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
...+.|++.+..+..+..-...|++..|..--+.+....|...-
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 45678999999999999999999999999999999999887543
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=9.5e-07 Score=72.81 Aligned_cols=91 Identities=23% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 005808 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---SADILHERGI 491 (676)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 491 (676)
++.+|.++-..|+.++|+.+|++++...... ..+++.+|..+..+|++++|+..+++.+...|+ +..+...++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3444444444444444444444444432221 233444444444444444444444444444443 3333334444
Q ss_pred HHHhcCCHHHHHHHHHH
Q 005808 492 VNFKFKDFNAAVEDLSA 508 (676)
Q Consensus 492 ~~~~~~~~~~A~~~~~~ 508 (676)
++...|++++|+..+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 44444444444444433
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.64 E-value=1.3e-06 Score=72.99 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EA 451 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~ 451 (676)
..++..++..|...+..|+|.+|++.|+.+....|.. ..+.+.+|.+++..+++++|+..+++.++++|.++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3557889999999999999999999999999888765 67889999999999999999999999999999874 57
Q ss_pred HHHHHHHHHHcCC
Q 005808 452 WKRRGQARAALGE 464 (676)
Q Consensus 452 ~~~la~~~~~~g~ 464 (676)
++..|.+++.+..
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 7888888877654
No 193
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=6.8e-06 Score=80.96 Aligned_cols=121 Identities=13% Similarity=0.019 Sum_probs=99.9
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-
Q 005808 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQI-LKEDPM--------YPEALIGRGTARAFQRELEAAISDFTEAIQS- 444 (676)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 444 (676)
.....++.+++.++..++..|++.+|.+.+... +...|. .-..|.++|.++++.|.|.-+..+|.++++.
T Consensus 234 n~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 234 NIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred hhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence 344477889999999999999999999988754 222222 1345689999999999999999999999961
Q ss_pred --------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 005808 445 --------NP---------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (676)
Q Consensus 445 --------~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (676)
.| ...++.++.|..|...|+.-.|.++|.++......+|..|..++.+.+.
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 11 2356889999999999999999999999999999999999999998764
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=1.1e-06 Score=81.40 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRG 456 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la 456 (676)
-.|..|..++..|+|..|...|..-++..|+. +.+++++|.+++.+|+++.|...|..+.+..|++ +++++.+|
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 38888999999999999999999999999986 6899999999999999999999999999987765 78899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005808 457 QARAALGESVEAIQDLSKALEFEPNSADILH 487 (676)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 487 (676)
.+...+|+.++|...|+++++..|....+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999998876544
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.62 E-value=1.2e-06 Score=72.22 Aligned_cols=96 Identities=21% Similarity=0.154 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---AGEAWKRR 455 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l 455 (676)
.++|..|.++-..|+.++|+.+|++++...... ..+++.+|..+...|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999975544 578999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 005808 456 GQARAALGESVEAIQDLSKALE 477 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~ 477 (676)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999987765
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.62 E-value=1.1e-05 Score=69.22 Aligned_cols=148 Identities=17% Similarity=0.132 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKALECLQ 575 (676)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 575 (676)
=+.+....-..+.+...|. ..-.+.+|..+...|++.+|...|++++. +..+++..+..++...+..+++..|...++
T Consensus 70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3445555555555555554 33456678888888888888888887775 345667777888888888888888888888
Q ss_pred HHHhcCc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005808 576 QVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (676)
Q Consensus 576 ~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (676)
+..+.+| ..+.....+|..+...|.+.+|...|+.++...|+ +......+..+.++|+..+|..-+..+.
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8887776 34666777788888888888888888888888777 6777777888888887766665554443
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.60 E-value=2.4e-07 Score=70.19 Aligned_cols=68 Identities=28% Similarity=0.459 Sum_probs=55.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (676)
Q Consensus 592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (676)
..+|...+++++|+.++++++..+|+++..+..+|.++..+|++.+|...|+++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888887765443
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.60 E-value=1.3e-07 Score=70.40 Aligned_cols=64 Identities=31% Similarity=0.354 Sum_probs=41.3
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (676)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (676)
+..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666665544433
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.59 E-value=1.9e-07 Score=69.56 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (676)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 456 (676)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555666666666666666666666666666666666666666666666655555555444443
No 200
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=2.7e-06 Score=73.81 Aligned_cols=112 Identities=27% Similarity=0.331 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 455 (676)
++.+-.-|.-++..|+|++|..-|..++...|.. ...|.+.|.++..++.++.|+..+.++++++|.+..++.+.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4556677889999999999999999999998875 34667888899999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (676)
+.+|..+..+++|+..|.+++..+|....+....+.+
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999999999998776655444433
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=3.1e-06 Score=78.57 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHH
Q 005808 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRAS 627 (676)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 627 (676)
.+..+.-++..|+|..|...|...++..|+. +.++++||.+++.+|+|+.|...|..+++..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444555555566666666666666655543 3556666666666666666666666666655443 466666666
Q ss_pred HHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 628 CYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
+...+|+.++|...|+++++..|+...+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666666666666666666666666554
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.50 E-value=4.6e-07 Score=90.15 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=61.0
Q ss_pred CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808 67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA---YILKGCAFSALGRKEEALSVWEKGYEH 132 (676)
Q Consensus 67 ~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~l~~~~~A~~~~~~al~~ 132 (676)
+.+..++|+|.+|+++|+|++|+..|++||+++|++..+ |+.+|.+|..+|++++|+.+|++|+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344458999999999999999999999999999999965 999999999999999999999999765
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.46 E-value=4.2e-05 Score=65.88 Aligned_cols=124 Identities=21% Similarity=0.210 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALE-FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALS 528 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~ 528 (676)
.+.+|......|++.+|..+|++++. +...++..+..++...+..+++..|...+++..+.+|. .++....+|..+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 34556666666666666666666553 34445556666666666666666666666666655543 2344555566666
Q ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 576 (676)
..|.+.+|...|+.++...|+ +.+....+..+..+|+.++|..-+..
T Consensus 172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 666666666666666665554 44455555555666655555444333
No 204
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=7.5e-05 Score=73.89 Aligned_cols=266 Identities=17% Similarity=0.090 Sum_probs=191.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhCCC------c--HHHHHH
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA-IQSNPS------A--GEAWKR 454 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~------~--~~~~~~ 454 (676)
.......++...+..-+..-.+.+.....+.+.+++..+..++..|++.+|.+.+... +...|. . ...|.+
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 3334445566667777777777777777788999999999999999999999987654 222222 1 235678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---------CC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005808 455 RGQARAALGESVEAIQDLSKALEF---------EP---------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (676)
+|.+++..|.|.-+..+|.++++. .| ..-+++++.|..|...|++-.|.++|.++....-.+
T Consensus 289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred cceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999951 11 235689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccc-------------------------------------------------HHHHHHHHHHHHhcC
Q 005808 517 KSAYTYLGLALSSIGE-------------------------------------------------YKKAEEAHLKAIQLD 547 (676)
Q Consensus 517 ~~~~~~la~~~~~~g~-------------------------------------------------~~~A~~~~~~al~~~ 547 (676)
+..|..++.+++...+ .+-|.-+++.++-+-
T Consensus 369 PrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll 448 (696)
T KOG2471|consen 369 PRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLL 448 (696)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcC
Confidence 9999999998865321 223444444443221
Q ss_pred ---------------------------------------------c-cc-----------HHHHHHHHHHHHHcCCHHHH
Q 005808 548 ---------------------------------------------R-NF-----------LEAWGHLTQFYQDLANSEKA 570 (676)
Q Consensus 548 ---------------------------------------------p-~~-----------~~~~~~la~~~~~~~~~~~A 570 (676)
| .. ..++-..+.+-...|+.-.|
T Consensus 449 ~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~A 528 (696)
T KOG2471|consen 449 NEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKA 528 (696)
T ss_pred chhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhH
Confidence 1 00 12344566677889999999
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHhh------c-----------------CCCC-----
Q 005808 571 LECLQQVLYIDKRFSKAYHLRGLLL-----HGLGQHKKAIKDLSSGL------G-----------------IDPS----- 617 (676)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~p~----- 617 (676)
+..-++.++. |+...++..+|.+| .-+.+..+|...+.-.+ . ++|.
T Consensus 529 L~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~ 607 (696)
T KOG2471|consen 529 LSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTR 607 (696)
T ss_pred HHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCc
Confidence 9999988865 34455555555554 45677777776654311 0 0111
Q ss_pred -----C-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 618 -----N-----IECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 618 -----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
. ...++++|.++.-+|++++|..++..+..+-|
T Consensus 608 q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 608 QSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred ccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 1 13678899999999999999999999988877
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00037 Score=63.67 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------cCcHHHHHHH
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID------KRFSKAYHLR 591 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~l 591 (676)
+.+.+..++...|.|.-.+..+.+.++.+ |..+.....+|.+.++.|+.+.|..+++.+-+.. .....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44445555556666666666666666655 3445555566666666666666666666443221 1223344555
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
+.++.-.+++..|...+.+++..+|.++.+-.+.|.|..-+|+..+|++.++.+++..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 5556666666666666666666666666666666666666666666666666666666653
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.0006 Score=62.33 Aligned_cols=226 Identities=15% Similarity=0.115 Sum_probs=157.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcccHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------------------PEALIGRGTARAFQRELEAAISDFTE 440 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (676)
....|...-..+.....+++|..-+...-+.+..+ .......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34455555556666666777766665554433211 11123334555555666555554443
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Q 005808 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSA 519 (676)
Q Consensus 441 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~ 519 (676)
.... ...+..........+..+..+++-+ ..+.+.+..++.-.|.|.-....+.++++.+ |..+..
T Consensus 148 L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 148 LKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 3221 0111122222222344555555432 3466778888888999999999999999988 567788
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 005808 520 YTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (676)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (676)
...+|.+.++.|+.+.|..+++..-+.. .....+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.|.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 8889999999999999999998654332 2235566778888999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808 594 LLHGLGQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~~ 618 (676)
|+.-.|+...|++.++.++...|..
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999874
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=1.1e-06 Score=67.45 Aligned_cols=63 Identities=25% Similarity=0.328 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808 70 QDICNRAFCYSQLELHKHVIRDCDKALQLD-------PTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (676)
Q Consensus 70 ~~~~~ra~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~ 132 (676)
..+.++|.+|..+|+|++|+..+++|+++. |..+.++..+|.+|..+|++++|+..|++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 458899999999999999999999999663 233569999999999999999999999999654
No 208
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00047 Score=72.66 Aligned_cols=217 Identities=18% Similarity=0.115 Sum_probs=130.5
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005808 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (676)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (676)
...|.+....|-.++|...|.+.-.. -.+-..|...|.|++|.+..+.--.+. -...|++.+..+...++
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc
Confidence 34456666777777787777776442 245566666777777766654322222 13456677777777777
Q ss_pred HHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------------
Q 005808 499 FNAAVEDLSAC----------VKLDKE----------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------------ 546 (676)
Q Consensus 499 ~~~A~~~~~~a----------l~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------ 546 (676)
.+.|+++|+++ +..+|. ++..|.+.|..+...|+.+.|+.+|..+-..
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence 77777777664 122222 3445666677777777777777777765432
Q ss_pred ---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CcCc--------------HHHHHHHHHHHHH
Q 005808 547 ---------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF--------------SKAYHLRGLLLHG 597 (676)
Q Consensus 547 ---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~--------------~~~~~~la~~~~~ 597 (676)
...+..+-+.+|+.|...|+..+|+..|.++-.. ...+ +.-....|..|..
T Consensus 954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 1334567788899999999999998888776422 1110 0011122333333
Q ss_pred cC-CHHHHHHHHHHh-----------------------hcCCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 598 LG-QHKKAIKDLSSG-----------------------LGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 598 ~g-~~~~A~~~~~~a-----------------------l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
.| +...|+..|.++ -.++| .++..+..-+..+....+|++|...+-.+
T Consensus 1034 ~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1034 LGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred cchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33 444444433332 11233 46788888889999999999988765444
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.29 E-value=3.1e-05 Score=62.34 Aligned_cols=95 Identities=23% Similarity=0.317 Sum_probs=54.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHh
Q 005808 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAI 632 (676)
Q Consensus 557 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~ 632 (676)
-|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+.+++++..+.. .++...|.+|..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 344455556666666666666666666666666666666666666666666666665533221 3455566666666
Q ss_pred ccHHHHHHHHHHHHhhCCC
Q 005808 633 GEYREAIKDYDAALDLELD 651 (676)
Q Consensus 633 g~~~~A~~~~~~al~~~p~ 651 (676)
|+-+.|...|+.+-++...
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 6666666666665555433
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.29 E-value=4.1e-06 Score=83.54 Aligned_cols=68 Identities=19% Similarity=0.058 Sum_probs=51.2
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH---HHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA---YHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
+|+++..++++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56667777777777777777777777777777777777643 777777777777777777777777776
No 211
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00069 Score=60.86 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=48.5
Q ss_pred HHHHHHHc-ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH-------HHH
Q 005808 523 LGLALSSI-GEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAY 588 (676)
Q Consensus 523 la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~ 588 (676)
+|.+|... .++++|+.+|+++-+..... ...+...+..-...++|.+|+..|+++....-+++ ..+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444332 45555555555554433221 22333444444555666666666665554333222 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 005808 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (676)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (676)
+.-|.|++-..+.-.+...+++..+.+|...
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 4455555555666666666666666666543
No 212
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00015 Score=68.37 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=124.9
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHH
Q 005808 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVNF 494 (676)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~ 494 (676)
...+.+.+..|++.+|....++.++..|.+.-++..--.+++..|+...-...+++.+.. +|+. ..+.-.++..+.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 334556677888888888889999999988888888888888889888888888888876 6555 334556677788
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHH
Q 005808 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKA 570 (676)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A 570 (676)
..|-|++|.+..++++++++.+..+...++.++...|++.++.+.+.+.-..-... ..-|...+.++...+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 88999999999999999999988888888999999999999988887654332221 23345667778888889999
Q ss_pred HHHHHHHH
Q 005808 571 LECLQQVL 578 (676)
Q Consensus 571 ~~~~~~al 578 (676)
+++|++-+
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 98887654
No 213
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0015 Score=58.73 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=131.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----C-cHHHHHHHHHHHHHcCCHH
Q 005808 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-----S-AGEAWKRRGQARAALGESV 466 (676)
Q Consensus 393 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~-~~~~~~~la~~~~~~g~~~ 466 (676)
..+.+++|.++|.++ |..|....+|..|-..|.++-+..- + ....+...+.+| +.+++.
T Consensus 26 g~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPE 90 (288)
T ss_pred CCcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChH
Confidence 345788888877765 8888888889988888888865421 1 234455555555 455999
Q ss_pred HHHHHHHHHHhcCCCCHH------HHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccH
Q 005808 467 EAIQDLSKALEFEPNSAD------ILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEY 533 (676)
Q Consensus 467 ~A~~~~~~al~~~p~~~~------~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~ 533 (676)
+|+.++++++++..+-.. .+..+|.+|... .++++|+.+|+++-...... ...+...+..-..+++|
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999998765544 344788888765 89999999999987764332 23455567777788999
Q ss_pred HHHHHHHHHHHhcCcccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH
Q 005808 534 KKAEEAHLKAIQLDRNFL-------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585 (676)
Q Consensus 534 ~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 585 (676)
.+|+..|++.....-+++ ..++.-|.+++-..+.-.+...+++..+.+|...
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 999999999887655542 3345667777777888888888888888999654
No 214
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.20 E-value=1.4e-05 Score=68.96 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhC----------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--
Q 005808 52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLEL----------HKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-- 118 (676)
Q Consensus 52 y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~-- 118 (676)
|+.|.+.|+.....+ .++..+.+-|.+++.+.+ +++|+.-++.||.++|+...|++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 457889999989999 556668999999988855 4678999999999999999999999999998875
Q ss_pred ---------HHHHHHHHHHHHhhccCChHHHHHH
Q 005808 119 ---------KEEALSVWEKGYEHALHQSADLKQF 143 (676)
Q Consensus 119 ---------~~~A~~~~~~al~~~~~~~~~~~~~ 143 (676)
|+.|..+|++|.+.+|+.....+.|
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 7888999999988888876655443
No 215
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.0098 Score=60.34 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=56.7
Q ss_pred HhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (676)
..++.+|.+.+.|+.+.+.+..+ -+++....|++.+...|..+.+|.......+...+|+....+|.+++.
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34567888888888888776665 888888888888888888888888888888888888888888877764
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.18 E-value=2.9e-06 Score=65.09 Aligned_cols=65 Identities=28% Similarity=0.480 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPS---NIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
...++..+|.+|...|++++|+.+|++++++ .++ ...++.++|.++..+|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666666666666666666666643 111 1356667777777777777777777777664
No 217
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.16 E-value=2.4e-06 Score=52.68 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=30.8
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005808 92 CDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (676)
Q Consensus 92 ~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~ 123 (676)
|++||+++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999996
No 218
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00027 Score=66.72 Aligned_cols=159 Identities=14% Similarity=0.058 Sum_probs=134.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHH
Q 005808 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-DKEN---KSAYTYLGLALSS 529 (676)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~ 529 (676)
.-+.+....|+..+|...+++.++..|.+.-++..--..++..|+...-...+++++.. +++. ..+.-.++..+..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556677899999999999999999999988888889999999999999999999877 5555 4556677888999
Q ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHcCCHHHHH
Q 005808 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAI 605 (676)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~ 605 (676)
.|-|++|.+..+++++++|.+..+....+.++...|++.++.+.+.+--..-... ..-|...|.++...+.|+.|+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999999999999999999999999999999999999887754332211 123566788899999999999
Q ss_pred HHHHHhh
Q 005808 606 KDLSSGL 612 (676)
Q Consensus 606 ~~~~~al 612 (676)
++|++-+
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 9998754
No 219
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0019 Score=58.55 Aligned_cols=168 Identities=14% Similarity=0.061 Sum_probs=89.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----C
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN-----P 446 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~ 446 (676)
......+...+.+|...++|++|..++.++.+-..++ +.++-..|.+......+.++..+++++..+. |
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 3345667777788888899999999999998654443 3445556666677777888888888876542 2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CC
Q 005808 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKL------DK 514 (676)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~ 514 (676)
+....-...+--.....++++|+..|++++.+...+ .+.+...+.++.+..++.+|-..+.+-... .+
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 222222222222334445556666665555442221 123344455555555555555444433211 11
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 005808 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (676)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (676)
.....+.....++...++|..|..+++..-+
T Consensus 188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 1122233333334444455555555555433
No 220
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=0.00016 Score=70.68 Aligned_cols=138 Identities=9% Similarity=-0.063 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (676)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (676)
.+|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3577777888888888999999999987666678888888888666 455566999999999999988899988888899
Q ss_pred HcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 597 GLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
..|+.+.|..+|++++..-|... .+|......-...|+.+......+++.+..|+....
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999988766544 578888888888999999999999999998886553
No 221
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.12 E-value=3.2e-05 Score=66.83 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (676)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (676)
++.|.+.++.....+|.+.+.+++.|.++..+.++...-+. ..-+++|+.-|+.++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es------------------------~~miedAisK~eeAL 62 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPES------------------------KKMIEDAISKFEEAL 62 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHH------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchH------------------------HHHHHHHHHHHHHHH
Confidence 45566666666666666666666666665544332110000 012345566666666
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808 613 GIDPSNIECLYLRASCYHAIGE-----------YREAIKDYDAALDLELDSMEKFVLQCL 661 (676)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~~~~ 661 (676)
.++|+..++++.+|.+|...+. |++|..+|++|...+|++......+.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 6666666666666666655543 778888888888888888765544443
No 222
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.05 E-value=0.0014 Score=66.04 Aligned_cols=186 Identities=13% Similarity=0.062 Sum_probs=102.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005808 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468 (676)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 468 (676)
....+..+.+.-++.-.++++++|+.+.+|..++.-.. .-..+|..+|+++++..... +.........|..-+
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~e- 248 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFWE- 248 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchhh-
Confidence 34456788999999999999999999999988875432 23567778888777643211 000001111111101
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 469 IQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (676)
Q Consensus 469 ~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (676)
.+...+. ...+...+|.+..+.|+.++|++.++..++..|. +..++.++..++...+.|.++...+.+.-
T Consensus 249 ------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 249 ------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1100111 1234455666666667777777777666665554 23456666666666666666666666643
Q ss_pred hc-CcccHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhcCcCcHHH
Q 005808 545 QL-DRNFLEAWGHLTQFYQD-LAN---------------SEKALECLQQVLYIDKRFSKA 587 (676)
Q Consensus 545 ~~-~p~~~~~~~~la~~~~~-~~~---------------~~~A~~~~~~al~~~~~~~~~ 587 (676)
++ -|+.....+..+.+-.+ .++ -..|++.+.++++.+|..+..
T Consensus 323 Di~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 323 DISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred cccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 22 13333333333322211 111 123566777777777765544
No 223
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.03 E-value=0.00022 Score=69.69 Aligned_cols=133 Identities=15% Similarity=0.054 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 005808 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-LGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (676)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (676)
+|..+.....+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344444555555555555555555554333344555555555444 2333335555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Q 005808 496 FKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (676)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 549 (676)
.|+.+.|..+|++++..-+... .+|......-...|+.+....+.+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5555555555555555443332 34444444444455555555555554444444
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0015 Score=59.15 Aligned_cols=199 Identities=15% Similarity=0.064 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 488 (676)
+..+..-+.++....++++|...+.++.+-..++. .++-..+.+......+.++..+++++...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l---------- 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL---------- 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------
Confidence 34455555666666677777777776664433321 22233334444444455555555544332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHH
Q 005808 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQ 562 (676)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 562 (676)
|.+.|..+.|-..++++- -....-++++|+.+|++++.....+ .+.+...++++.
T Consensus 101 ----Y~E~GspdtAAmaleKAa---------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 101 ----YVECGSPDTAAMALEKAA---------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred ----HHHhCCcchHHHHHHHHH---------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 222333333322222221 1223334555555555555443222 233444555666
Q ss_pred HcCCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHh
Q 005808 563 DLANSEKALECLQQVLYI------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSNIECLYLRASCYHAI 632 (676)
Q Consensus 563 ~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~ 632 (676)
+..++.+|-..+.+-... .++....+.....+++...+|..|...++...++ .|++..+..+|-..| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 666666665555443221 2222334444445555556777777777665543 234445555554444 34
Q ss_pred ccHHHHHHHHH
Q 005808 633 GEYREAIKDYD 643 (676)
Q Consensus 633 g~~~~A~~~~~ 643 (676)
|+.++..+.+.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 56665555443
No 225
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.00 E-value=1.1e-05 Score=50.16 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 005808 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (676)
Q Consensus 71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~ 102 (676)
.|+++|.+|+.+|++++|+..|++||+++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 46677777777777777777777777777753
No 226
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.99 E-value=0.00085 Score=68.14 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=87.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCcCcH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH
Q 005808 560 FYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (676)
Q Consensus 560 ~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (676)
.+...|+...|+.++..++...|... ....++|.++.+.|-...|-..+.+++.+....+-.++.+|..+..+.+.+.|
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 34568999999999999999888543 45788999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHH
Q 005808 639 IKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 639 ~~~~~~al~~~p~~~~~~~ 657 (676)
++.|+.|++++|+++..--
T Consensus 696 ~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECEN 714 (886)
T ss_pred HHHHHHHHhcCCCChhhHH
Confidence 9999999999999988643
No 227
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=8.4e-05 Score=66.81 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
..-+-..|..++....|..|+..|.+++..+|..+..|.+.+.++++..+++.+.....+++++.|+....++.+|....
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 34455668888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 005808 461 ALGESVEAIQDLSKALEF 478 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~ 478 (676)
....+++|+..+.++..+
T Consensus 90 ~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhccccHHHHHHHHHHHH
Confidence 999999999999999654
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.97 E-value=1.8e-05 Score=52.55 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005808 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111 (676)
Q Consensus 70 ~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~ 111 (676)
..+..+|.+|.++|++++|+..++++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457788899999999999999999999999999999988875
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=2.6e-05 Score=77.75 Aligned_cols=105 Identities=22% Similarity=0.076 Sum_probs=88.5
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChhHHH
Q 005808 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQAYI 107 (676)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~ 107 (676)
+-...+.-..+++..|..+....||..|+++++.. .....|.|||.++.+- |+--.|+.||-.|+.+||-..+||+
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 33333444467788899999999999999999988 5666699999999886 5778999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 005808 108 LKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (676)
Q Consensus 108 ~~g~~~~~l~~~~~A~~~~~~al~~~~~~ 136 (676)
+++.++..++++.+|+.+...+.-..|..
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999998887775555533
No 230
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0038 Score=57.30 Aligned_cols=126 Identities=18% Similarity=0.244 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 005808 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLS 473 (676)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~ 473 (676)
.-..|+.+-..++..+|.+-.+|...-.++..++ +..+-++++...++.+|++..+|...-.+....|++. .-++..+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 3345555555555555555444444444433322 3344444555555555555555544444444444444 4444444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (676)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 521 (676)
.++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+-.+|.
T Consensus 138 ~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 138 LMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred HHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 455444444444444444444444455555555554444433333333
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.91 E-value=2.4e-05 Score=51.95 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 005808 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC 660 (676)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 660 (676)
.++..+|.+|..+|++++|++.|+++++.+|+++.+|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45666777777777777777777777777777776666554
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.85 E-value=0.0027 Score=63.10 Aligned_cols=165 Identities=12% Similarity=-0.000 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALEF----EPNSADILHERGIVNFK---FKDFNAAVEDLSA-CVKLDKENKSAYTYL 523 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~~~~~~~~~~l 523 (676)
...+-..|....+|+.-+.+.+.+-.. .++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334444444445555544444444333 22334444445555544 4555555555555 223334444555555
Q ss_pred HHHHHHc---------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------h----cCc
Q 005808 524 GLALSSI---------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL--------Y----IDK 582 (676)
Q Consensus 524 a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~----~~~ 582 (676)
|.+|-.. ...++|+.+|.++.+..|+. ..-.+++.++...|...+...-+++.. + ..-
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5544321 12556666666666666432 222344444444443222221111111 0 011
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (676)
.+.+.+-.++.+..-.|++++|...++++++..|.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 22233334455555556666666666666655544
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.85 E-value=0.012 Score=60.24 Aligned_cols=66 Identities=26% Similarity=0.232 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc-----------------HHHHHHHH
Q 005808 586 KAYHLRGLLLHGL------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE-----------------YREAIKDY 642 (676)
Q Consensus 586 ~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~ 642 (676)
.++..+|...... +..++++..|..+++..|+...+|+.+|..+...-+ ...|+..|
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 4566666666666 788888889999999988888888888887654421 13477777
Q ss_pred HHHHhhCCC
Q 005808 643 DAALDLELD 651 (676)
Q Consensus 643 ~~al~~~p~ 651 (676)
-+++...+.
T Consensus 333 ~~al~~~~~ 341 (352)
T PF02259_consen 333 LKALSLGSK 341 (352)
T ss_pred HHHHhhCCC
Confidence 777777776
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.81 E-value=4.4e-05 Score=47.38 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 005808 103 LQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (676)
Q Consensus 103 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~ 135 (676)
+++|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 468999999999999999999999999887775
No 235
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.01 Score=64.43 Aligned_cols=230 Identities=15% Similarity=0.125 Sum_probs=120.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005808 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (676)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 467 (676)
|......+-|++|..+|.+- .-+..+.. .+....+..+.|.++.+++ +.+.+|..+|.+....|...+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence 44455555666666666542 01111111 1112234444444444432 345667777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------------------HHHH
Q 005808 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---------------------------KSAY 520 (676)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------~~~~ 520 (676)
|++.|-++ +++..+.....+..+.|.|++-++++..+-+..... ..-.
T Consensus 1123 AieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i 1197 (1666)
T KOG0985|consen 1123 AIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANI 1197 (1666)
T ss_pred HHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhH
Confidence 77766543 455666666666667777777766666555432211 1111
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------------------
Q 005808 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK------------------ 582 (676)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------------ 582 (676)
...|.-++..|.|+.|.-+|. +..-|..++..+...|+|..|....+++-....
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH
Confidence 223444444455555444443 234456677777777777777777766532110
Q ss_pred -------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808 583 -------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643 (676)
Q Consensus 583 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (676)
-+.+-+-.+...|...|-+++-+..++.++.+...+...+..||.+|.+- ++++-.+.++
T Consensus 1270 iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1270 ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 01122334555566666666666666666666655555666666655432 3444444443
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.79 E-value=0.012 Score=58.66 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc
Q 005808 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (676)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 584 (676)
.+-.++.+..-.|++++|.+.+++++...|..
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33445555666677777777777777666543
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.79 E-value=0.0023 Score=64.44 Aligned_cols=197 Identities=16% Similarity=0.048 Sum_probs=126.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (676)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (676)
+....-..+..-..+..+...-++...+|++++|+.+.+|..++.-. .....+|..+++++++...... .....
T Consensus 166 D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~ 239 (539)
T PF04184_consen 166 DALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQF 239 (539)
T ss_pred CccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhh
Confidence 33333344555566778899999999999999999999988877532 3346788888888887633211 11111
Q ss_pred HHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHH
Q 005808 527 LSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHK 602 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~ 602 (676)
....|..-+ .+...+. ...+...+|.+..+.|+.++|++.++..++..|. +..+..++..++...+.|.
T Consensus 240 ~~~~g~~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 240 LQHHGHFWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhcccchhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 111111111 1111111 1445567888888888888888888888877664 4567888888888888888
Q ss_pred HHHHHHHHhhcC-CCCCHHHHHHHHHHHHH-hcc---------------HHHHHHHHHHHHhhCCCcHHHH
Q 005808 603 KAIKDLSSGLGI-DPSNIECLYLRASCYHA-IGE---------------YREAIKDYDAALDLELDSMEKF 656 (676)
Q Consensus 603 ~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~ 656 (676)
++...+.+.-+. -|+.....+..+.+-.+ .++ -..|.+.+.+|++.+|.-+...
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 888888886443 24555555544443322 111 1346788999999999877643
No 238
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.77 E-value=0.055 Score=54.01 Aligned_cols=92 Identities=9% Similarity=-0.050 Sum_probs=63.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----H---------H--
Q 005808 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----E---------A-- 451 (676)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~---------~-- 451 (676)
+-...+-..+.+.-...+...-+..|..+......|...++.+.+.+|+..+......-.... + .
T Consensus 51 rilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l 130 (549)
T PF07079_consen 51 RILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFL 130 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHH
Confidence 333344455666655555555566777788888889999999999999988877665422221 1 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALEF 478 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~ 478 (676)
-...+.++...|++.++...+++.+..
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 122577888999999999999888754
No 239
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.74 E-value=5.7e-05 Score=75.27 Aligned_cols=111 Identities=24% Similarity=0.326 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 462 (676)
.+-..|..++..+.|+.|+..|.++++++|+++..+...+..+...+++..|+..+.++++.+|....+|+..|.+.+..
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34456777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808 463 GESVEAIQDLSKALEFEPNSADILHERGIVN 493 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (676)
+.+.+|+..|+......|+++.+...+..+-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999999998877666553
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.73 E-value=7.6e-05 Score=46.31 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 005808 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (676)
Q Consensus 71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~ 102 (676)
.++.+|.+++.+|+|++|+..|+++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666666666666666666666666666654
No 241
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.071 Score=53.62 Aligned_cols=191 Identities=16% Similarity=0.149 Sum_probs=136.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCC------CHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-------C
Q 005808 461 ALGESVEAIQDLSKALEFEPN------SAD--------ILHERGIVNFKFKDFNAAVEDLSACVKL---DKE-------N 516 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~------~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~-------~ 516 (676)
..|-+++|.++-++++..... ... .+-.++.+-.-.|++.+|++....+... .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 446678888887777754211 111 2334566667789999999888777654 344 2
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---------
Q 005808 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-F--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--------- 584 (676)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------- 584 (676)
+.++..+|......+.++.|...|..+.+.... + .....++|.+|.+.|+-+.-.+.++.. .|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH
Confidence 356677888888899999999999999886443 2 345568899999988776655555443 3331
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808 585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 585 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
..+++..|...+.++++.+|...+.+.++.... ..-.+..++.+..-.|+..++.+...-++++....++
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 346778889999999999999999999987521 1235667888999999999999988888776544333
No 242
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.70 E-value=0.014 Score=63.00 Aligned_cols=262 Identities=16% Similarity=0.050 Sum_probs=185.4
Q ss_pred CcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHH
Q 005808 379 ISVDFRLSRGIAQVNE-----GKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQ 443 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~ 443 (676)
.+......+|.+++.- .|.+.|+.+|..+.+. .-.++.+.+.+|.+|.... ++..|+.+|.++..
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 3466777778777654 5899999999998761 1124667888999998853 77889999999987
Q ss_pred hCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCC
Q 005808 444 SNPSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKEN 516 (676)
Q Consensus 444 ~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~ 516 (676)
. .++++.+.+|.++..-. +...|..+|..+.... +..+.+.++.+|.. ..+...|..++.++...+ .
T Consensus 322 ~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~ 395 (552)
T KOG1550|consen 322 L--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N 395 (552)
T ss_pred c--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence 6 45677788898887765 6789999999998765 67888888888865 358899999999999886 4
Q ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCcccHH---HHH-HHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHH
Q 005808 517 KSAYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE---AWG-HLTQFYQD----LANSEKALECLQQVLYIDKRFSKA 587 (676)
Q Consensus 517 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~---~~~-~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~ 587 (676)
+.+...++..+..- +.+..+...+.......-..+. ++. ........ ..+...+...+.++. ...+..+
T Consensus 396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~a 473 (552)
T KOG1550|consen 396 PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNADA 473 (552)
T ss_pred hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHHH
Confidence 45455555544332 7777766666555444322211 111 11111111 124555666666654 3456778
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCCCc
Q 005808 588 YHLRGLLLHGL----GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 588 ~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 652 (676)
...+|.+|..- .+++.|...|.++.... ....+++|.++.. .. ...|.++|.++.+.+...
T Consensus 474 ~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 474 ILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCchh
Confidence 88888888764 46999999999998877 8899999999864 23 789999999998876654
No 243
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.012 Score=54.05 Aligned_cols=248 Identities=15% Similarity=0.165 Sum_probs=183.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHH
Q 005808 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-GESVEAIQDL 472 (676)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~ 472 (676)
..+|.++..+|+.++..+..+ ..|+..-..++.++|.+..+|...-.++..+ .+..+-++++
T Consensus 39 te~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred chhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 357888888888887766554 4677777888999999988887776666554 4678889999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Q 005808 473 SKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (676)
Q Consensus 473 ~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 551 (676)
...+..+|.+-.+|...-.+....|++. .-+.+.+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+-
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999988888899888 888999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-cC--CHHHHHHHHHHhh-cCCCCCHHH
Q 005808 552 EAWGHLTQFYQD-LA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG--QHKKAIKDLSSGL-GIDPSNIEC 621 (676)
Q Consensus 552 ~~~~~la~~~~~-~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~ 621 (676)
.+|...-.+... .| ..+.-+.+..+.+...|++..+|..+.-++.. .| .+..-.......+ ......|..
T Consensus 182 SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~l 261 (318)
T KOG0530|consen 182 SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFL 261 (318)
T ss_pred chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhH
Confidence 777654333222 12 12344567778888999999999998888876 44 2344455555544 444445666
Q ss_pred HHHHHHHHH------HhccHH---HHHHHHHHHH-hhCCCcHHHHHH
Q 005808 622 LYLRASCYH------AIGEYR---EAIKDYDAAL-DLELDSMEKFVL 658 (676)
Q Consensus 622 ~~~la~~~~------~~g~~~---~A~~~~~~al-~~~p~~~~~~~~ 658 (676)
+-.+..+|. ..+.-+ +|...++..- +.+|-....|..
T Consensus 262 la~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 262 LAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 666666652 222333 5777776654 677765555543
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.66 E-value=0.019 Score=58.85 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHh------ccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808 620 ECLYLRASCYHAI------GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD 669 (676)
Q Consensus 620 ~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 669 (676)
.++..+|...... +..+++...|.++++++|+...+|+..+..+.+.+..
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~ 308 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES 308 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence 5667777777777 8899999999999999999999999988888776543
No 245
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00045 Score=62.42 Aligned_cols=112 Identities=22% Similarity=0.171 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH
Q 005808 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588 (676)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 588 (676)
..++..-|+-++..|+|.+|...|+.++.. .|..++ .++++......+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e------------------------W~eLdk~~tpLl 233 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE------------------------WLELDKMITPLL 233 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH------------------------HHHHHHhhhHHH
Confidence 456777888888888888888888877643 122111 111111222345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
.+++.|+...|+|-++++.....+...|.+..+++..|.+....=+..+|...|.++++++|.-
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 5555555666666666666666666666666666666665555555566666666666655543
No 246
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.62 E-value=0.12 Score=53.77 Aligned_cols=292 Identities=11% Similarity=0.054 Sum_probs=189.7
Q ss_pred HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcccHHHHHHHHHHHH
Q 005808 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-GTARAFQRELEAAISDFTEAI 442 (676)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al 442 (676)
......+.......|.--..|-.-|..-...|..+.+..+|++.+.--|.....|... +.+--..|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4444455666677777777888888888888888888888888888888776666543 333445677777777888887
Q ss_pred HhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHh-
Q 005808 443 QSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK------FKDFNAAVEDLSACVKL- 512 (676)
Q Consensus 443 ~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~~~~~~A~~~~~~al~~- 512 (676)
.....+ ...|-..-.....++++..-...|++.++..-.....++..-.-+.. ....+++...-......
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 765544 34555555555677788888888888877543333322222221222 22333333332222210
Q ss_pred --------------------CCCC--HHHHHHHH-------HHHHHcccHHHHHHHHHHHHhc--------CcccHHHHH
Q 005808 513 --------------------DKEN--KSAYTYLG-------LALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWG 555 (676)
Q Consensus 513 --------------------~~~~--~~~~~~la-------~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 555 (676)
.|.. ......+. .++.......+.+..++..+.. ++.....|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 0000 00000111 1111222233333344444332 122345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHhcc
Q 005808 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGE 634 (676)
Q Consensus 556 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 634 (676)
.....-...|+++...-.|++++--.......|...+......|+..-|...+..+.+.. |+.+.+...-+.+-...|+
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGN 381 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc
Confidence 777777889999999999999988888888999999999999999999998888888764 6677888888888888999
Q ss_pred HHHHHHHHHHHHhhCCCcHHH
Q 005808 635 YREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 635 ~~~A~~~~~~al~~~p~~~~~ 655 (676)
+..|...++++..-.|+...+
T Consensus 382 ~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 382 FDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHHHHHHHHHHhhCCchhhh
Confidence 999999999999888887665
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.60 E-value=0.00016 Score=44.89 Aligned_cols=34 Identities=32% Similarity=0.644 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
+.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888875
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.60 E-value=0.032 Score=58.82 Aligned_cols=177 Identities=15% Similarity=0.020 Sum_probs=127.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcccHHHHHH
Q 005808 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSA------YTYLGLALS----SIGEYKKAEE 538 (676)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~------~~~la~~~~----~~g~~~~A~~ 538 (676)
-.|.-++.+-|. ....+..+.--.|+-+.+++.+.++.+...-. +-+ |+.....+. .....+.|.+
T Consensus 178 G~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 178 GLFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 345555666553 23334444445689999999999887632111 111 111111111 2456788999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
.+....+..|+..-..+..|+++...|+.++|++.|++++.....- .-.++.+++++.-+.+|++|..++.+..+.
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999887533322 345788999999999999999999999987
Q ss_pred CCCCH-HHHHHHHHHHHHhccH-------HHHHHHHHHHHhhC
Q 005808 615 DPSNI-ECLYLRASCYHAIGEY-------REAIKDYDAALDLE 649 (676)
Q Consensus 615 ~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 649 (676)
+.-.. ...+..|.++...|+. ++|...|.++-.+-
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 65533 4556778899999998 88888888876543
No 249
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.58 E-value=0.15 Score=53.90 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
.+.++..++..+...|++++|-+.|-.+++++.-+
T Consensus 994 ~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 994 MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred CccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 35778888888889999999999999998887544
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0048 Score=58.10 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=105.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-HHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQA 458 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~la~~ 458 (676)
..+.-+..+......|++.+|...|..++...|.+..+...++.++...|+.+.|...+...-....+.. .........
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 4566777888899999999999999999999999999999999999999999999888776432222211 111111122
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcc
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG 531 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g 531 (676)
+.......+. ..+++.+..+|++.+..+.++..+...|+.+.|.+.+-..++.+.. +..+...+-.++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2333332222 2345556678888888888999999999999998888888777543 3344444444444444
No 251
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.56 E-value=5.9e-05 Score=46.48 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=19.0
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 005808 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (676)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (676)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555666666666666666666666665554
No 252
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.49 E-value=0.0023 Score=65.18 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=82.7
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHcccC---ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005808 42 ELAKLC--SLRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (676)
Q Consensus 42 ~~~~~~--~~~~y~~Ai~~y~~ai~~~~---~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l 116 (676)
.++.+| -+|+-.+|..||..++-..+ .......+|-.+.+.|...+|-..+-.|+.-.|..+.-+|.+|.++..+
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml 296 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML 296 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence 344455 58999999999999987763 3334778899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCChHH
Q 005808 117 GRKEEALSVWEKGYEHALHQSAD 139 (676)
Q Consensus 117 ~~~~~A~~~~~~al~~~~~~~~~ 139 (676)
+.+...+-+|..+...+|.+--.
T Consensus 297 ~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 297 GEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred hhhhhhhhhhhhhhccCcchhHH
Confidence 99999999999998888865544
No 253
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.48 E-value=0.075 Score=57.52 Aligned_cols=255 Identities=17% Similarity=0.045 Sum_probs=176.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 005808 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG-- 463 (676)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g-- 463 (676)
+...|..+++.+.+. .+..+...+|.++..- .+.+.|+.+|+.+... ....+.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 346777888777554 4577888888888764 6899999999998771 1124557788999998853
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccH
Q 005808 464 ---ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEY 533 (676)
Q Consensus 464 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~ 533 (676)
+...|+.++.++.... ++.+.+.+|.++.... ++..|..+|..+... .+..+.+.++.+|.. .-+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6788999999998875 5677888888887765 678999999998765 677888889988865 3478
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCcH----HHHHHHHHHHHH----cCCHHHH
Q 005808 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRFS----KAYHLRGLLLHG----LGQHKKA 604 (676)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~----~g~~~~A 604 (676)
..|..++.++.+.. .+.+...++..+... +.++.+.-.+....+..-..+ ............ ..+...+
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 99999999999887 455555555554332 777777666555544322211 111111111111 1255666
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808 605 IKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (676)
Q Consensus 605 ~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (676)
...+.++.. ..++.+...+|.+|..- .+++.|...|.++.... ....+.++..+
T Consensus 459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~ 516 (552)
T KOG1550|consen 459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMH 516 (552)
T ss_pred HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHH
Confidence 666666654 34567888889888765 35899999999998876 55556665554
No 254
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.44 E-value=0.22 Score=54.38 Aligned_cols=269 Identities=17% Similarity=0.080 Sum_probs=172.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----CcHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNP-----SAGEA 451 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~ 451 (676)
+...+.+...+..+...|...+|+...-.+ .+|.- .......+.-+...++.. .+...++.-| .++..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~L 417 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRL 417 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchH
Confidence 344778888888889999999998876554 23322 122233344444444433 3333333334 23556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----H
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALEFEPN--S-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----K 517 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~ 517 (676)
....++......++.+|..++.++...-+. . ....-..|.+....|+++.|.+..+.++..-|.+ .
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 667788888999999999988887765443 1 2344556788888999999999999999887765 3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHH--HHHHHHHHH----hcCcCcH
Q 005808 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEK--ALECLQQVL----YIDKRFS 585 (676)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~--A~~~~~~al----~~~~~~~ 585 (676)
.++..+|.+..-.|++++|..+..++.+..... ..+....+.++..+|+... ....+...- ...|...
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 466778899999999999999999888774332 3344556778888884333 333333222 2233332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
......+.++...-+++.+.......++. .|... -..+.++.++...|+.++|...+.....+.-+.
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 33333333333333356665555555543 33322 233578999999999999999998887764443
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.016 Score=54.74 Aligned_cols=150 Identities=19% Similarity=0.123 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-DILHERGIVN 493 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 493 (676)
.+.-+..+.-....|++.+|...|..++...|++.++...++.++...|+.+.|...+...-....... ..+......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 445566677788889999999999999999999999999999999999999999888765432222111 1111112233
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcC
Q 005808 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLA 565 (676)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~ 565 (676)
.+.....+. ..+++.+..+|++..+.+.++..+...|+.+.|.+.+-..++.+.. +..+...+-.++...|
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333322222 2344556678999999999999999999999999988888876543 2444444444444444
No 256
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.38 E-value=0.068 Score=54.56 Aligned_cols=214 Identities=11% Similarity=0.003 Sum_probs=111.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcC---C
Q 005808 403 IFDQILKEDPMYPEALIGRGTARAFQRE--------------LEAAISDFTEAIQSNPS-AGEAWKRRGQARAALG---E 464 (676)
Q Consensus 403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g---~ 464 (676)
.+++++..-+-.+++|+..+..+...++ -+++...|++++..-.. +...++.++..-...- .
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence 3455555555556666555555444444 45566666666543221 2222333332222221 2
Q ss_pred HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcccHHHHHHHHHH
Q 005808 465 SVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEAHLK 542 (676)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 542 (676)
++.....+++++.....++ -+|..+...-.+..-...|...|.++-+.......++..-|.+ |.-.++..-|..+|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 4444555555555433322 2344444444455556666666666655433332333333322 3345666667777777
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Cc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (676)
Q Consensus 543 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (676)
.++..++.+.........+...++-..|...|++++.. .+ ....+|..+-..-..-|+...+++.-++-....|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 77776666666666666666667766777777776654 22 2235555555555566666666665555444433
No 257
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.2 Score=50.52 Aligned_cols=214 Identities=15% Similarity=0.123 Sum_probs=146.7
Q ss_pred HcccHHHHHHHHHHHHHhCCC------cHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-------C
Q 005808 427 FQRELEAAISDFTEAIQSNPS------AGE--------AWKRRGQARAALGESVEAIQDLSKALEF---EPN-------S 482 (676)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~------~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~ 482 (676)
..|-+++|.++-++++..... ... .+-.+..+-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 457788888888877754221 111 2334566667789999999888777654 343 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---------
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--------- 550 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------- 550 (676)
+.....+|......|.++.|...|..+.+..... .....++|.+|...|+.+.--+.++.. .|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH
Confidence 4467778888888899999999999998874332 234456889999988766555554443 3332
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---CCCHH
Q 005808 551 -LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID---PSNIE 620 (676)
Q Consensus 551 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 620 (676)
..+++..|...+.++++.+|...+.+.++.... ....+..++.+..-.|+..++.+...-++++. |+.+.
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 456777888888999999999999999877531 12346678889999999999998887776543 44432
Q ss_pred ---HHHHHHHHHHHhcc--HHHHHHHHH
Q 005808 621 ---CLYLRASCYHAIGE--YREAIKDYD 643 (676)
Q Consensus 621 ---~~~~la~~~~~~g~--~~~A~~~~~ 643 (676)
....+-.+|...|+ .+...+.|.
T Consensus 524 qLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 524 QLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 22345566777777 444444443
No 258
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0019 Score=61.24 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005808 556 HLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (676)
Q Consensus 556 ~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (676)
.-|.-|+..++|..|+..|.+.++..-.+ ...|.+.|-+....|+|..|+..+.+++..+|.+..+++.-|.|+..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 34444555555555555555555432222 23344555555555555555555555555555555555555555555
Q ss_pred hccHHHHHHHHHHHHhhCC
Q 005808 632 IGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 632 ~g~~~~A~~~~~~al~~~p 650 (676)
+.++.+|..+.+..++++.
T Consensus 166 Le~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHhhhhhhhH
Confidence 5555555555555444433
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.015 Score=51.23 Aligned_cols=117 Identities=21% Similarity=0.071 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 537 EEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSS 610 (676)
Q Consensus 537 ~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (676)
....++....++.. ..+...++..+...|++++|+..++.++....+. .-+-.++|.+....|.+++|+..+..
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 33344444444443 2344667788888999999999999888554432 34567889999999999999988876
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
.....- .+......|.++...|+..+|+..|+++++.+++...
T Consensus 152 ~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 152 IKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred cccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 543211 1345677899999999999999999999998765544
No 260
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.29 E-value=0.0058 Score=48.65 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=69.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccc---CChh----------HHHHHHHHHHHhhCHHHHHHHHHHHH-------HhCCC
Q 005808 42 ELAKLCSLRNWSKAIRILDSLLAQS---YEIQ----------DICNRAFCYSQLELHKHVIRDCDKAL-------QLDPT 101 (676)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~---~~~~----------~~~~ra~~~~~~g~~~~A~~~~~~al-------~~~p~ 101 (676)
+.-+-+..|-|.+|...+.+|++.. |.-. +|..++.++..+|+|++++....+|| +++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 3445578899999999999998865 2211 25678889999999999999888888 44444
Q ss_pred ----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 102 ----LLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (676)
Q Consensus 102 ----~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 131 (676)
|..+.+.+|.++..+|+.++|++.|+.+-+
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 566889999999999999999999999943
No 261
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.29 E-value=0.43 Score=52.66 Aligned_cols=278 Identities=12% Similarity=0.049 Sum_probs=180.1
Q ss_pred hhHHHHHHhhccCCC----cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcccHHH
Q 005808 365 NKKFCVTRISKSKSI----SVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPM--Y----PEALIGRGTARAFQRELEA 433 (676)
Q Consensus 365 ~~~~~~~~~~~~~~~----~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~ 433 (676)
....|+..+....+. .+..++.+|..++ ...+++.|..++.+++..... . ..+.+.++.++.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 334466655544333 3457889999888 678999999999999876533 2 234566788888888766
Q ss_pred HHHHHHHHHHhCCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHhcCCHHH
Q 005808 434 AISDFTEAIQSNPS---A-GEAWKRR--GQARAALGESVEAIQDLSKALEFE--PNSADI----LHERGIVNFKFKDFNA 501 (676)
Q Consensus 434 A~~~~~~al~~~~~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~~~~~~ 501 (676)
|+..+++.++.... . ....+.+ .......+++..|++.++...... +.++.+ ....+.+....+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 99999999886544 1 2222222 233333479999999999988765 344442 3334666777788888
Q ss_pred HHHHHHHHHHhCC----------CCHHHHHHHHH--HHHHcccHHHHHHHHHHHH---hc---Cc---c-----------
Q 005808 502 AVEDLSACVKLDK----------ENKSAYTYLGL--ALSSIGEYKKAEEAHLKAI---QL---DR---N----------- 549 (676)
Q Consensus 502 A~~~~~~al~~~~----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~---~p---~----------- 549 (676)
+++.+.++..... ....+|..+-. ++...|+++.+...+++.- +. .+ .
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 8888888744321 11334444433 4455677666665554432 11 11 0
Q ss_pred -----------c-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------c---Cc-------------
Q 005808 550 -----------F-----------LEAWGHLTQFYQDLANSEKALECLQQVLYID-------K---RF------------- 584 (676)
Q Consensus 550 -----------~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~---~~------------- 584 (676)
. .-++..-|......+..++|.+++.++++.- + ..
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~ 357 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR 357 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence 0 1123334455666777778888887776431 1 00
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCC------CHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808 585 ---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---DPS------NIECLYLRASCYHAIGEYREAIKDYD 643 (676)
Q Consensus 585 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (676)
....+..+.+.+-.+++..|...++.+... .|. .+..++..|..+...|+.+.|..+|.
T Consensus 358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 122456678888899999999988877654 222 36788999999999999999999998
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.29 E-value=0.016 Score=61.03 Aligned_cols=114 Identities=19% Similarity=0.068 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHH
Q 005808 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALEC 573 (676)
Q Consensus 498 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~ 573 (676)
..+.|.+.+....+..|+..-.++..|+++...|+.++|++.+++++...... .-.++.++.++..+++|++|..+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 44555555555555555555555555555555555555555555555322111 22345555555556666666666
Q ss_pred HHHHHhcCcC-cHHHHHHHHHHHHHcCCH-------HHHHHHHHHh
Q 005808 574 LQQVLYIDKR-FSKAYHLRGLLLHGLGQH-------KKAIKDLSSG 611 (676)
Q Consensus 574 ~~~al~~~~~-~~~~~~~la~~~~~~g~~-------~~A~~~~~~a 611 (676)
+.+..+.+.- .....+..|.++...|+. ++|...|.++
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 6655554332 223334445555555555 5555555544
No 263
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.28 E-value=0.31 Score=53.25 Aligned_cols=234 Identities=15% Similarity=0.015 Sum_probs=153.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM--Y-------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA- 448 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 448 (676)
.+|...+..|+.....+++.+|..++.++...-+. . .......|.+....|++++|+++.+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34677788899999999999999999988764433 1 3555677888899999999999999999887765
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----C--HHHHHHHHHHHHhcCCH--HHHHHHHHHHHH----h
Q 005808 449 ----GEAWKRRGQARAALGESVEAIQDLSKALEFEPN----S--ADILHERGIVNFKFKDF--NAAVEDLSACVK----L 512 (676)
Q Consensus 449 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~~~~--~~A~~~~~~al~----~ 512 (676)
..+...+|.+..-.|++++|..+...+.+.... . ..+....+.++..+|+. .+....+...-. .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 346777889999999999999999888776321 1 22444557778888832 333333322221 2
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----Cccc--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-
Q 005808 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL----DRNF--L-EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF- 584 (676)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~- 584 (676)
.|-........+.++...-+++.+..-....++. .|.. . -.++.++.++...|+.++|...+........+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 2333333333333333333355555555554443 2322 2 223588999999999999999888876543221
Q ss_pred H------HHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808 585 S------KAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (676)
Q Consensus 585 ~------~~~~~la~~~~~~g~~~~A~~~~~~al 612 (676)
+ .+..........+|++.+|.....+..
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 1 112223344456789999988887743
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.24 E-value=0.00069 Score=41.90 Aligned_cols=31 Identities=39% Similarity=0.486 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 005808 104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (676)
Q Consensus 104 ~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~ 134 (676)
++|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566666666666666666666666644444
No 265
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.062 Score=58.80 Aligned_cols=242 Identities=19% Similarity=0.116 Sum_probs=149.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 457 (676)
-..+..|-.+|.+.+..|...+|++.|-++ +++..+.....+..+.|.|++-+.++..+.+.... +.+-..+..
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~ 1174 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIF 1174 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHH
Confidence 345778888888888888888888888765 55677777788888888888888887776654322 122223344
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (676)
+|.+.++..+-.+.+ ..|+... ....|.-++..|.|+.|.-+|.. ..-|..++..+..+|+|..|.
T Consensus 1175 AyAkt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHH
Confidence 445555544433322 2343332 33456666666666666555532 223455666666666666666
Q ss_pred HHHHHHHhcC-------------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q 005808 538 EAHLKAIQLD-------------------------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (676)
Q Consensus 538 ~~~~~al~~~-------------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 592 (676)
...+++-... --+.+-+-.+...|...|-+++-+..++.++.+...+-..+..+|
T Consensus 1241 D~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1241 DAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELA 1320 (1666)
T ss_pred HHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 6555543211 001333455667788888899998888888887777777778888
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCC--C------CCHHHHHHHHHHHHHhccHHHHHH
Q 005808 593 LLLHGLGQHKKAIKDLSSGLGID--P------SNIECLYLRASCYHAIGEYREAIK 640 (676)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~--p------~~~~~~~~la~~~~~~g~~~~A~~ 640 (676)
.+|.+- ++++-.++++-....- | +....|..+..+|.+-..|+.|.-
T Consensus 1321 iLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1321 ILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 877764 4555555555443321 1 224567777777777777776643
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.17 E-value=0.013 Score=51.05 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 462 (676)
.+...|......|+...++..+.+++.......-.-..- ..-.......+... ...+...++..+...
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEA 75 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 344556666778889999999999987653321000000 00011111111111 123445566777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (676)
|++++|+..+.+++..+|.+..++..+..+|...|+...|+..|+++..
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777776643
No 267
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.16 E-value=0.16 Score=50.40 Aligned_cols=193 Identities=20% Similarity=0.124 Sum_probs=104.2
Q ss_pred HHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cC
Q 005808 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----FK 497 (676)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~ 497 (676)
...+++..+...+..+-.. .+......++.+|... .+..+|..+|..+.. ..++...+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCccc
Confidence 3456677777777766552 2234555566555443 345666666664333 2345566666666655 33
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 498 DFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (676)
Q Consensus 498 ~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 576 (676)
+..+|..+|.++....-.. ......++.++..-. ...+. ..+...|...|.+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~--------------------------~~~~~~A~~~~~~ 180 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV--------------------------AYDDKKALYLYRK 180 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc--------------------------cHHHHhHHHHHHH
Confidence 5666666666665553222 122444444443321 00000 0011345555555
Q ss_pred HHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc---------------cHHH
Q 005808 577 VLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG---------------EYRE 637 (676)
Q Consensus 577 al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~ 637 (676)
+-... ++.+...+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...| +...
T Consensus 181 aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~ 255 (292)
T COG0790 181 AAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQ 255 (292)
T ss_pred HHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHH
Confidence 54433 45666666666644 2366777777777766655 56666666 555444 7777
Q ss_pred HHHHHHHHHhhCCCcHH
Q 005808 638 AIKDYDAALDLELDSME 654 (676)
Q Consensus 638 A~~~~~~al~~~p~~~~ 654 (676)
|..++..+....+....
T Consensus 256 a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 256 ALEWLQKACELGFDNAC 272 (292)
T ss_pred HHHHHHHHHHcCChhHH
Confidence 78888877776655444
No 268
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.16 E-value=0.00041 Score=66.05 Aligned_cols=95 Identities=27% Similarity=0.384 Sum_probs=87.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 005808 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (676)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 465 (676)
..+...+..|.+++|+..|..++.++|.....+...+.++..+++...|+..+..++.++|+....+-..+.....+|+|
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 005808 466 VEAIQDLSKALEFEP 480 (676)
Q Consensus 466 ~~A~~~~~~al~~~p 480 (676)
++|...+..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999988764
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.13 E-value=0.3 Score=47.79 Aligned_cols=122 Identities=12% Similarity=0.009 Sum_probs=74.2
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhC----CC---c-------
Q 005808 392 VNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQSN----PS---A------- 448 (676)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----~~---~------- 448 (676)
..+|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.+.- +. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888875543 222 345667777777777 8888888888877652 11 0
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 005808 449 GEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (676)
..++..++.++...+.++ +|...++.+-...|+.+.++...-.+....++.+.+.+.+.+++...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 224555666666655543 34444444555556656665555555555666666666666666553
No 270
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.11 E-value=0.37 Score=48.42 Aligned_cols=144 Identities=18% Similarity=0.104 Sum_probs=92.9
Q ss_pred HHHHHHHHHHccc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh---------cCc---Cc
Q 005808 520 YTYLGLALSSIGE-YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE--CLQQVLY---------IDK---RF 584 (676)
Q Consensus 520 ~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~---------~~~---~~ 584 (676)
+..-|.-+...|. -++|+..++.+++..|.+...-...-.. -...|.+|+. .+.+.+. +.| .+
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e 459 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE 459 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence 3445677788887 8899999999999988876443222111 1122333322 2222221 222 23
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808 585 SKAYHLR--GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (676)
Q Consensus 585 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (676)
.+.-..+ |..++..|+|.++.-+-.=..+..| ++.++..+|.++....+|.+|..++...-- +.+-.+.....+++
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~ 537 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKALA 537 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHHH
Confidence 3343333 5567789999999988888888999 699999999999999999999999875422 22223445555555
Q ss_pred HHHhh
Q 005808 663 FYQVL 667 (676)
Q Consensus 663 ~~~~~ 667 (676)
+-++-
T Consensus 538 lCqKh 542 (549)
T PF07079_consen 538 LCQKH 542 (549)
T ss_pred HHHHh
Confidence 54443
No 271
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.10 E-value=0.48 Score=49.50 Aligned_cols=295 Identities=13% Similarity=-0.035 Sum_probs=189.8
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 367 KFCVTRISKSKSISVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAI 442 (676)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (676)
.....+....-|.+.+.|...-.... ..|+.+.-...|+++......+ ...|-........++++..-...|++.+
T Consensus 99 ~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 99 VKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 44555666677788888776544443 4578888888899998765443 3455555555577889999999999998
Q ss_pred HhCCCcHHHHHHHHHHHHHc----------------------------------------------CCHHHHHHHHHHH-
Q 005808 443 QSNPSAGEAWKRRGQARAAL----------------------------------------------GESVEAIQDLSKA- 475 (676)
Q Consensus 443 ~~~~~~~~~~~~la~~~~~~----------------------------------------------g~~~~A~~~~~~a- 475 (676)
+..-.....++..-.-+... +.++++...+.+.
T Consensus 179 eiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~ 258 (577)
T KOG1258|consen 179 EIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV 258 (577)
T ss_pred hhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH
Confidence 86432221111100000000 0111111111111
Q ss_pred -----------------------Hhc-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 476 -----------------------LEF-----EPN---SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (676)
Q Consensus 476 -----------------------l~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (676)
+.. .|. +...|......-...|+++...-.+++++--.......|...+
T Consensus 259 ~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~ 338 (577)
T KOG1258|consen 259 SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYA 338 (577)
T ss_pred HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHH
Confidence 100 111 1224555556666778888888888888777777778888888
Q ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH
Q 005808 525 LALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603 (676)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 603 (676)
......|+.+-|...+..+.+.. |..+.....-+.+-...|++..|..++++..+..|+...+-...+......|+.+.
T Consensus 339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~ 418 (577)
T KOG1258|consen 339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLED 418 (577)
T ss_pred HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhh
Confidence 88888888888887777777664 55577777777788888899999999999888778877777777777778888887
Q ss_pred HH---HHHHHhhcCCCCC---HHHHHHHHHH-HHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808 604 AI---KDLSSGLGIDPSN---IECLYLRASC-YHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661 (676)
Q Consensus 604 A~---~~~~~al~~~p~~---~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 661 (676)
+. ..+.....-..+. ...+...++. +.-.++.+.|...+.++++..|++...+..+..
T Consensus 419 ~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 419 ANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIR 483 (577)
T ss_pred hhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHH
Confidence 77 3333333221111 2333444443 345578899999999999999999887655443
No 272
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.08 E-value=0.0024 Score=43.66 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005808 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (676)
Q Consensus 71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 112 (676)
+++.+|.+++++|+|++|...++.+|+++|++..|.-....+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467899999999999999999999999999999877665443
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.08 E-value=0.00098 Score=41.20 Aligned_cols=32 Identities=34% Similarity=0.682 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
.+|+.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46788888888888888888888888888874
No 274
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.014 Score=50.85 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
..+...++..+...|++++|+..+++++..+|-+..++..+..+|...|+..+|+..|+++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345667888888999999999999999999999999999999999999999999999988754
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.044 Score=48.41 Aligned_cols=95 Identities=20% Similarity=0.111 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005808 453 KRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (676)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 529 (676)
..++..+...|++++|...++.++....+. .-+-.+++.+....|.+++|+..+....... -.+......|.++..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~ 171 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH
Confidence 345566666666666666666666443222 2244556666666666666666665432110 012233445666666
Q ss_pred cccHHHHHHHHHHHHhcCc
Q 005808 530 IGEYKKAEEAHLKAIQLDR 548 (676)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p 548 (676)
.|+-++|+..|.+++...+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 172 KGDKQEARAAYEKALESDA 190 (207)
T ss_pred cCchHHHHHHHHHHHHccC
Confidence 6666666666666666653
No 276
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.05 E-value=0.098 Score=55.17 Aligned_cols=172 Identities=16% Similarity=0.119 Sum_probs=86.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 005808 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 534 (676)
.|.-+...|+++.|+.+|-.+- .+............|.+|+..++..-.... ....|-.++.-|...|+|+
T Consensus 712 wg~hl~~~~q~daainhfiea~--------~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHH
Confidence 4555666677777777665431 122223333445566666666654433221 1223444566666677777
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHH-------
Q 005808 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIK------- 606 (676)
Q Consensus 535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~------- 606 (676)
.|.+.|.++-. ...-..+|-+.|++..|.+.-.+.. .|.. ...|...+.-+-+.|+|.+|.+
T Consensus 783 ~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~ 852 (1636)
T KOG3616|consen 783 IAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE 852 (1636)
T ss_pred HHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence 77766655321 1223345555666666666555542 2221 2334444444444444444433
Q ss_pred ------HHHHhh----------cCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 607 ------DLSSGL----------GIDPSN-IECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 607 ------~~~~al----------~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
.|.+.- +..|+. .+.+..+|.-+...|+...|...|-++
T Consensus 853 p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 853 PDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred chHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 332210 112221 245666777777777777776666544
No 277
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.94 E-value=0.085 Score=52.77 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808 552 EAWGHLTQFYQDLANSEKALECLQQVLYID 581 (676)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 581 (676)
.++..+.....+.|..+.|+..++-.++.+
T Consensus 155 ~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 155 YVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 445566666777888888888888777764
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.93 E-value=0.46 Score=46.52 Aligned_cols=222 Identities=16% Similarity=0.087 Sum_probs=138.5
Q ss_pred HHHcccHHHHHHHHHHHHHhC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC----C---CC------
Q 005808 425 RAFQRELEAAISDFTEAIQSN----PSA----GEAWKRRGQARAALG-ESVEAIQDLSKALEFE----P---NS------ 482 (676)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~----~~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----p---~~------ 482 (676)
....|+++.|..++.++-... |+. ...+++.|......+ +++.|..+++++.++- + ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999987654 322 356778888888899 9999999999998772 1 11
Q ss_pred -HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 005808 483 -ADILHERGIVNFKFKDFN---AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (676)
Q Consensus 483 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 558 (676)
..++..++.+|...+.++ +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+-....+....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 236778889998887654 4555666666667888887766666666689999999999999886542211111111
Q ss_pred HHH--HHcCCHHHHHHHHHHHHhc--CcCcHHHHHHH---HHHHHHcC--C------HHHHHHHHHHhhcC--CCCCH--
Q 005808 559 QFY--QDLANSEKALECLQQVLYI--DKRFSKAYHLR---GLLLHGLG--Q------HKKAIKDLSSGLGI--DPSNI-- 619 (676)
Q Consensus 559 ~~~--~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l---a~~~~~~g--~------~~~A~~~~~~al~~--~p~~~-- 619 (676)
..+ ........|...+...+.. .|.... +... ..++...+ + .+.....+....+. .|-.+
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 111 1234455677777666542 232211 2221 22222222 2 22222333322111 12222
Q ss_pred -----HHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 620 -----ECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 620 -----~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
..+...|...++.++|.+|..+|+-++.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3445678888999999999999997763
No 279
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.91 E-value=0.51 Score=46.73 Aligned_cols=170 Identities=20% Similarity=0.078 Sum_probs=114.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 005808 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA- 461 (676)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~- 461 (676)
.+......+++..|...+..+-.. ..+.....++.++... .+..+|..+|..+. ....+.+.+.+|.+|..
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G 122 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANG 122 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcC
Confidence 334445678999999999988662 2346778888887664 46888999999554 45677888899999987
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 005808 462 ---LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS- 529 (676)
Q Consensus 462 ---~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~- 529 (676)
..+..+|..+|.++....-.. ......++.+|..-. +...|...+.++.... ++.+...+|.+|..
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred CCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 458999999999999886433 344777888877642 2225666666665553 55566666655543
Q ss_pred ---cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808 530 ---IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (676)
Q Consensus 530 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 565 (676)
..++.+|..+|.++-+... ....+.++ ++...|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2356666666666665544 55555555 444334
No 280
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.58 Score=56.64 Aligned_cols=280 Identities=14% Similarity=0.096 Sum_probs=169.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcCC
Q 005808 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG-QARAALGE 464 (676)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~~g~ 464 (676)
..-..+...|++..|..+|+++++.+|+....+...-...+..|.+...+...+-.....++...-+..++ .+....++
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc
Confidence 34445566799999999999999999988877777777888888888888877766655555554444443 22345555
Q ss_pred HHHHHHHHH--------------HHHhcCCCCHHHH-HHHHHH----------HHhcCCHHHHHHHHHHHHHh-------
Q 005808 465 SVEAIQDLS--------------KALEFEPNSADIL-HERGIV----------NFKFKDFNAAVEDLSACVKL------- 512 (676)
Q Consensus 465 ~~~A~~~~~--------------~al~~~p~~~~~~-~~la~~----------~~~~~~~~~A~~~~~~al~~------- 512 (676)
++.-..+.. ..+.....+.-.. ..+... ....|.+..+.++.-++...
T Consensus 1534 wD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1534 WDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 555444422 0111111111100 000000 00111223333332222111
Q ss_pred ------CCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---C----cccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 513 ------DKE-----NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL---D----RNFLEAWGHLTQFYQDLANSEKALECL 574 (676)
Q Consensus 513 ------~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~~~~~~A~~~~ 574 (676)
.++ +..-|.+....-....+..+-+-.+++++-. + ..-.+.|...|++....|+++.|...+
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 111 1223333333222223344444455554322 2 233789999999999999999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CC----------C------HHHHHHHHHHHHHhccH--
Q 005808 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PS----------N------IECLYLRASCYHAIGEY-- 635 (676)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~-- 635 (676)
-.+.+.. -+.++...|..+...|+-..|+..+++.+..+ |+ . ..+.+.++......|++
T Consensus 1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence 9988766 47889999999999999999999999999542 22 1 12344455555556664
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 005808 636 REAIKDYDAALDLELDSMEKFVLQCLAFYQVLF 668 (676)
Q Consensus 636 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 668 (676)
.+-+++|..+.++.|...+.++.++ .||.+++
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~-~yy~kll 1803 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLG-KYYDKLL 1803 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHH-HHHHHHh
Confidence 4567899999999998888888888 3444443
No 281
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.87 E-value=0.5 Score=47.38 Aligned_cols=240 Identities=10% Similarity=-0.058 Sum_probs=135.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005808 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (676)
Q Consensus 403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 482 (676)
++++++.-.|-.+++|+.........++-+.|+...++++...|. ....++.+|...++.+....+|+++.+.-.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~-- 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK-- 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH--
Confidence 345555555555666666666666666666666666665554443 444555666555555555555555432100
Q ss_pred HHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808 483 ADILHERGIVNF---KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (676)
Q Consensus 483 ~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 559 (676)
.-+..+..-. ..|+++...+++-+-. ....-+|..+-....+..-.+.|...|.++-+..-....++..-|.
T Consensus 365 --r~ys~~~s~~~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~ 439 (660)
T COG5107 365 --RKYSMGESESASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAF 439 (660)
T ss_pred --HHHhhhhhhhhccccCCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHH
Confidence 0000000000 0122211111111111 1122334434444444555667777777776554233344433333
Q ss_pred H-HHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHhccHH
Q 005808 560 F-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYR 636 (676)
Q Consensus 560 ~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 636 (676)
+ +...|++..|..+|+-.+...|+++......-..+...++-..|...|+.++..-.+. ..+|-.+...-..-|+..
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence 3 4457888888888888888888887776667777788888888888888777643332 456666666666778888
Q ss_pred HHHHHHHHHHhhCCCc
Q 005808 637 EAIKDYDAALDLELDS 652 (676)
Q Consensus 637 ~A~~~~~~al~~~p~~ 652 (676)
.+...-++..++.|..
T Consensus 520 ~v~sLe~rf~e~~pQe 535 (660)
T COG5107 520 NVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhHHHHHHHHcCcH
Confidence 8877777777777765
No 282
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.86 E-value=0.094 Score=52.46 Aligned_cols=145 Identities=13% Similarity=0.073 Sum_probs=100.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc------------ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808 403 IFDQILKEDPMYPEALIGRGTARAFQ------------RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (676)
Q Consensus 403 ~~~~~l~~~p~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (676)
-|++.++.+|.+..+|..+....-.. .-.+.-+.+|++|++.+|++...+..+-.......+.++...
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555666666666666655443332 124556778888888888888888887777777778888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCC----C--------------CHHHHHHHHHHHHH
Q 005808 471 DLSKALEFEPNSADILHERGIVNFK---FKDFNAAVEDLSACVKLDK----E--------------NKSAYTYLGLALSS 529 (676)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~----~--------------~~~~~~~la~~~~~ 529 (676)
-+++++..+|.+...|..+-..... .-.++.....|.+++..-. . ...++..++....+
T Consensus 87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~ 166 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ 166 (321)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777665544433 2346666666666664311 0 12355667778888
Q ss_pred cccHHHHHHHHHHHHhcC
Q 005808 530 IGEYKKAEEAHLKAIQLD 547 (676)
Q Consensus 530 ~g~~~~A~~~~~~al~~~ 547 (676)
.|..+.|+..++-.++.+
T Consensus 167 aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 167 AGYTERAVALWQALLEFN 184 (321)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 999999999999999875
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.84 E-value=0.0017 Score=40.67 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808 105 AYILKGCAFSALGRKEEALSVWEKGYEH 132 (676)
Q Consensus 105 a~~~~g~~~~~l~~~~~A~~~~~~al~~ 132 (676)
++..+|.+|..+|++++|+.+|+++|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888887543
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.75 E-value=0.0037 Score=38.19 Aligned_cols=33 Identities=36% Similarity=0.654 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367888888888888888888888888888864
No 285
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.037 Score=57.37 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=78.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcccCCh--hH-----HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005808 42 ELAKLCSLRNWSKAIRILDSLLAQSYEI--QD-----ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (676)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~--~~-----~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 114 (676)
..+++|+.++|..++++|...+.--+.. .. .-+++.||+.+.+.+.|++.+..|-+.||.++--.+..-.+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 4567899999999999999987643211 11 3578889999999999999999999999999998888888999
Q ss_pred HcCCHHHHHHHHHHHHhhccC
Q 005808 115 ALGRKEEALSVWEKGYEHALH 135 (676)
Q Consensus 115 ~l~~~~~A~~~~~~al~~~~~ 135 (676)
..|+-++|+.+..+.....-+
T Consensus 440 ~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HhcchHHHHHHHHHHHhhhcc
Confidence 999999999999888654433
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.55 E-value=0.14 Score=51.91 Aligned_cols=141 Identities=16% Similarity=0.036 Sum_probs=70.3
Q ss_pred HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------CCc---HHHHHHHHHHH
Q 005808 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--------------------------PSA---GEAWKRRGQAR 459 (676)
Q Consensus 409 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~---~~~~~~la~~~ 459 (676)
..+|-+.+++..++.++..+|+...|.+.+++++-.. +.| ..+.+.....+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666554211 011 12334445555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccc
Q 005808 460 AALGESVEAIQDLSKALEFEPN-SAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYTYLGLALSSIGE 532 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~ 532 (676)
.+.|-+..|+++.+-.+.++|. ++- +++.+-....+.++++--+..++........ -+...+..+.++...++
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~ 193 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEK 193 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcC
Confidence 5566666666666666666665 443 2333333334455555555555543331110 12233444455555554
Q ss_pred H---------------HHHHHHHHHHHhcCcc
Q 005808 533 Y---------------KKAEEAHLKAIQLDRN 549 (676)
Q Consensus 533 ~---------------~~A~~~~~~al~~~p~ 549 (676)
. +.|...+.+|+...|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 194 EESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4 5555555555555444
No 287
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.51 E-value=0.076 Score=53.72 Aligned_cols=171 Identities=14% Similarity=-0.093 Sum_probs=88.1
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HH
Q 005808 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LE 552 (676)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 552 (676)
+..+|-+.+++..++.++..+|+...|.+.+++++-.........+.....-...|.. .+ --..+.| -.
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~-----rL---~~~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC-----RL---DYRRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc-----cc---CCccccchHHHH
Confidence 3456666777777777777777777777766666532111100000000000000000 00 0001112 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-cHHH-HHHHHHHHHHcCCHHHHHHHHHHhhcCCC-----CCHHHHHHH
Q 005808 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKR-FSKA-YHLRGLLLHGLGQHKKAIKDLSSGLGIDP-----SNIECLYLR 625 (676)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l 625 (676)
+.+.....+.+.|-+..|.++.+-.+.++|. ++.. ...+-....+.++|+--+..++....... .-|...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 3444555666667777777777777777775 5433 33333344455666555555555443111 123455666
Q ss_pred HHHHHHhccH---------------HHHHHHHHHHHhhCCCcHH
Q 005808 626 ASCYHAIGEY---------------REAIKDYDAALDLELDSME 654 (676)
Q Consensus 626 a~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~ 654 (676)
+.++...++. +.|...+.+|+...|.-..
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 6677777776 7888888888887775444
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.50 E-value=0.0046 Score=37.73 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 005808 105 AYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (676)
Q Consensus 105 a~~~~g~~~~~l~~~~~A~~~~~~al~~~~ 134 (676)
|++++|.++..+|++++|+..|++.++..|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 455555555555555555555555544444
No 289
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.49 E-value=0.29 Score=45.53 Aligned_cols=189 Identities=11% Similarity=0.011 Sum_probs=110.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----CCcHH-HHHHHHHHHHHc
Q 005808 393 NEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAGE-AWKRRGQARAAL 462 (676)
Q Consensus 393 ~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~-~~~~la~~~~~~ 462 (676)
...+.++|+.-|++++++.+.. ..++-.+..+.+.+|++++-+..|.+.+..- .+..+ ....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3458999999999999988775 3467778889999999999999999886531 11111 111121111222
Q ss_pred CCHHHHHHHHHHHHhc--CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHH
Q 005808 463 GESVEAIQDLSKALEF--EPNSADIL----HERGIVNFKFKDFNAAVEDLSACVKLDKEN------------KSAYTYLG 524 (676)
Q Consensus 463 g~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la 524 (676)
.+.+--...|+..+.. +..+...| ..+|.+|+..+.|..-.+.+++.-...... .+++..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 3333333344433322 12233333 357888888887777766666654432111 13344445
Q ss_pred HHHHHcccHHHHHHHHHHHHhcCccc--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808 525 LALSSIGEYKKAEEAHLKAIQLDRNF--LEAWG----HLTQFYQDLANSEKALECLQQVLYID 581 (676)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~ 581 (676)
.+|..+.+..+-...|++++.+...- |.+.- .=|..+.+.|++++|-..|-.+++..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 56666667777777777777653322 22211 12345667778888877777776653
No 290
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.48 E-value=0.0068 Score=56.84 Aligned_cols=69 Identities=20% Similarity=0.025 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 005808 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK 141 (676)
Q Consensus 73 ~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~ 141 (676)
.+.|.-..+.|+.++|.+.+..|+.++|++++++...|.....-++.-+|-.+|-+||.++|.+++++-
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 455666778899999999999999999999999999999999999999999999999999999988754
No 291
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0048 Score=59.36 Aligned_cols=104 Identities=16% Similarity=0.042 Sum_probs=88.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccc-----------CC---------hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 005808 42 ELAKLCSLRNWSKAIRILDSLLAQS-----------YE---------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (676)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-----------~~---------~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~ 101 (676)
..++.|++++|+.|..-|.++...- ++ ...+.|.+.|-++++.+..|+..+..++..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 4567899999999999999885311 12 011568899999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHH
Q 005808 102 LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLE 145 (676)
Q Consensus 102 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 145 (676)
.+++|+++|..+..+.++++|...++.+....|+++.-...+..
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999988766555543
No 292
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.19 Score=51.60 Aligned_cols=241 Identities=16% Similarity=0.072 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLS 473 (676)
Q Consensus 398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~ 473 (676)
+...+.+.......|+++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|+++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444555555567888888888888888888887778888777765 221 2245567888888888888888888
Q ss_pred HHHhcCCCCHHHHHHHH-HHHHh--------cCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808 474 KALEFEPNSADILHERG-IVNFK--------FKDFNAAVEDLSAC---VKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (676)
Q Consensus 474 ~al~~~p~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~a---l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (676)
...+...-..-.|..++ -+++. .|+-+.|-.+++.. +...|.+...-.. -..++.++-.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKverf~~ 398 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVERFVK 398 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHHHhc
Confidence 88776654444444443 33322 22333333333222 2222222111000 0111111111
Q ss_pred HHHhcCcccHH--HHHHHHHHHHH--cCCHHHHHHHHHHHH---hc-CcCcH-HHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808 542 KAIQLDRNFLE--AWGHLTQFYQD--LANSEKALECLQQVL---YI-DKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (676)
Q Consensus 542 ~al~~~p~~~~--~~~~la~~~~~--~~~~~~A~~~~~~al---~~-~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 612 (676)
+.- .++..+. .++.++.++.. ....++.. -++... +. ++++. --+..+|.++..+|+...|..+|...+
T Consensus 399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred ccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 110 1111111 22333333322 12222222 111111 11 22222 346678999999999999999999888
Q ss_pred cC---CCC----CHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCC
Q 005808 613 GI---DPS----NIECLYLRASCYHAIGE-YREAIKDYDAALDLELD 651 (676)
Q Consensus 613 ~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~ 651 (676)
+. ... -|.+++.+|..|..+|. ..++..++.+|-+...+
T Consensus 477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 43 111 26799999999999999 99999999999887644
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.36 E-value=0.0036 Score=39.19 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 621 CLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
++..+|.+|..+|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35677777777777777777777755443
No 294
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.35 E-value=0.0094 Score=58.44 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=74.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHcccCChhH-----------H--------HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh
Q 005808 44 AKLCSLRNWSKAIRILDSLLAQSYEIQD-----------I--------CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104 (676)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~~~~~~-----------~--------~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~ 104 (676)
..+|.+|+|..|+.-|..|++++..... . -.+..||+++++-+-|+...-+.|.++|.++-
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 3579999999999999999886621111 1 37788999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 105 AYILKGCAFSALGRKEEALSVWEKG 129 (676)
Q Consensus 105 a~~~~g~~~~~l~~~~~A~~~~~~a 129 (676)
-|++.+.++..+.+|.+|-+.+--+
T Consensus 264 nHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 264 NHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887766
No 295
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.32 E-value=0.017 Score=61.66 Aligned_cols=122 Identities=21% Similarity=0.257 Sum_probs=99.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccC-----ChhHHHHHHHHHHHh--hCHHHHHHHHHHHHHhCC
Q 005808 28 RVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY-----EIQDICNRAFCYSQL--ELHKHVIRDCDKALQLDP 100 (676)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~-----~~~~~~~ra~~~~~~--g~~~~A~~~~~~al~~~p 100 (676)
++.-++..+-.+..+.+..|+.++|.+|..-|..++.+.| ....++|++.|+..+ |+|.+++.+|.-|+...|
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p 124 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQP 124 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccc
Confidence 3455566667777899999999999999999999988763 122278999988876 699999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 005808 101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL 149 (676)
Q Consensus 101 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~ 149 (676)
...++++.++.+|..+++++-|++...-.....|..........++...
T Consensus 125 ~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 125 RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999877778888886554433344333
No 296
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.20 E-value=0.026 Score=38.67 Aligned_cols=40 Identities=35% Similarity=0.527 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (676)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (676)
+.++.+|..+.++|+|++|..+.+.+++++|++..+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3567777778888888888888888888888877764433
No 297
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.18 E-value=0.01 Score=35.67 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 005808 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (676)
Q Consensus 71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~ 101 (676)
.+.++|.++..+|++++|+..+++++.++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566777777777777777777777777665
No 298
>PRK10941 hypothetical protein; Provisional
Probab=96.16 E-value=0.047 Score=52.40 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
...++-.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34556666777777777777777777777777777777777777777777777777777777777776543
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.13 E-value=0.11 Score=44.70 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
...++.........++.+++..++..+--+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 44566666666777777777777777777777777777777777778888888888877777777777777777777777
Q ss_pred HcCCHH
Q 005808 461 ALGESV 466 (676)
Q Consensus 461 ~~g~~~ 466 (676)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 776643
No 300
>PRK10941 hypothetical protein; Provisional
Probab=96.12 E-value=0.061 Score=51.63 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK 141 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~ 141 (676)
..|.-.+|.+.++++.|+..++..+.++|+++.-+--+|.+|.++|.+..|...++.-++.+|+.+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 4577789999999999999999999999999987878999999999999999999999999999886643
No 301
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.05 E-value=0.009 Score=53.77 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=55.3
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 005808 77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (676)
Q Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~ 136 (676)
....+.|+.+.|.+.+.+|+++-|.|...|+|+|.-..+.|+++.|.+.|++.++++|+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345677899999999999999999999999999999999999999999999998888864
No 302
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=1.1 Score=47.46 Aligned_cols=179 Identities=13% Similarity=0.050 Sum_probs=113.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 005808 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL----------IGRGTARAFQRELEAAISDFTEAIQSNP 446 (676)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (676)
+..++..|..+|...+..-.++.|...|-+.-. .|. .... ...+.+-..-|.+++|...|-.+-..+
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 455689999999998888888888887776522 111 1111 233444445588888888776542211
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (676)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (676)
....++...|+|-...++++..-.-..+ -..++..+|..+..+..|++|.++|...-. .-.+.
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ 829 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQI 829 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHH
Confidence 1234556677777666666543222111 145788899999999999999988876432 12345
Q ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (676)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (676)
.+++...+|++-.. ....-|++...+-.+|.++...|.-++|.+.|-+.
T Consensus 830 ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 830 ECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 66666666665433 33345677777777888888888888887776553
No 303
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.03 E-value=0.064 Score=54.25 Aligned_cols=94 Identities=9% Similarity=0.001 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC-HHHHHHHHHHhh
Q 005808 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGL 612 (676)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 612 (676)
..-...|+.++...+.++..|........+.+.+.+--.+|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4456677888888888888888877777777778888888888888888888888877766666554 778888888888
Q ss_pred cCCCCCHHHHHHHHH
Q 005808 613 GIDPSNIECLYLRAS 627 (676)
Q Consensus 613 ~~~p~~~~~~~~la~ 627 (676)
+.+|+++..|...-.
T Consensus 168 R~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFR 182 (568)
T ss_pred hcCCCChHHHHHHHH
Confidence 888888777654433
No 304
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=1.7 Score=42.17 Aligned_cols=266 Identities=14% Similarity=0.079 Sum_probs=161.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCc--
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKE--DPMY--------PEALIGRGTARAFQRELEAAISDFTEAIQ---SNPSA-- 448 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~-- 448 (676)
.+..+.......++++++.++..++.. .|.+ ......+|..+...|+..+-......... .-+..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 366677777788889999999998874 2222 34567889999999988776555544322 21111
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CC--C
Q 005808 449 GEAWKRRGQAR-AALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL----DK--E 515 (676)
Q Consensus 449 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~--~ 515 (676)
......+.... ..-+..+.-+.++..+++...... ..-..+..+|...++|.+|+......++. +. .
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 11111122211 122334455555555554432221 13345778889999999999887766543 21 1
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CcH
Q 005808 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFS 585 (676)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~ 585 (676)
-.+++..-..+|....+..+|...+..+-... |.. ...-..-|.++....+|..|..+|-++++-.. ++.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 23455666778888888888888877665432 211 22233445666667889999999988886432 222
Q ss_pred HH-----HHHHHHHHHHcCCHHH--HHHHHHHhhcCCCCCHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCCC
Q 005808 586 KA-----YHLRGLLLHGLGQHKK--AIKDLSSGLGIDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 586 ~~-----~~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~ 651 (676)
.+ |..+..+. .+..++ ++-.-+.+++....+.++....+.++. .+.+|+.|+..|+.-+..+|-
T Consensus 247 ~A~~sLKYMlLcKIM--ln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIM--LNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHH--hcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 32 23333333 444444 444445566766667888888888875 456888999988888877664
No 305
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.96 E-value=0.12 Score=41.27 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=65.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808 387 RGIAQVNEGKYASAISIFDQILKEDPMYPE---ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (676)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 463 (676)
+|..++..|++-+|+++.+..+...+++.. .+...|.++..+ +......+....+.+|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl~------- 62 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLLG------- 62 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHHH-------
Confidence 467788899999999999999988777653 334444444332 2222222222222232
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005808 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (676)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (676)
+++.|.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus 63 ----sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 ----SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ----hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 556777777777777777777777666666677777777776654
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.94 E-value=0.15 Score=44.05 Aligned_cols=78 Identities=21% Similarity=0.053 Sum_probs=39.1
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q 005808 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (676)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 600 (676)
+..+-...++.+++...+...--+.|..+..-..-|.+++..|++.+|+..++.+....|..+.+.-.++.|+...|+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 333344444555555555544445555555555555555555555555555555544444444444455555544444
No 307
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.87 E-value=2.3 Score=42.85 Aligned_cols=275 Identities=12% Similarity=0.105 Sum_probs=173.3
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 448 (676)
.+..-++.+|.+.-.|+.+...+-.+|.+++-.+.+++...-.|--+.+|.....--....++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 4555678899999999999999999999999999999999888888888776666566667888888888888865332
Q ss_pred HHHHHHHHHHHHHcC-----C----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 005808 449 GEAWKRRGQARAALG-----E----SVEAIQDLSKALEFEPNSADILHERGIVNFK---------FKDFNAAVEDLSACV 510 (676)
Q Consensus 449 ~~~~~~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al 510 (676)
.+.|...-..-.+.+ + .-+|.+..-...-..|.....|...+..+.. +.+.+.-...|.+++
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 444443322222222 1 2233333333334567777777777665432 334555667777877
Q ss_pred HhCCCCHH-HHHHHHHHHH-------------HcccHHHHHHHHHHHHhc-------CcccHH-----------HHHHHH
Q 005808 511 KLDKENKS-AYTYLGLALS-------------SIGEYKKAEEAHLKAIQL-------DRNFLE-----------AWGHLT 558 (676)
Q Consensus 511 ~~~~~~~~-~~~~la~~~~-------------~~g~~~~A~~~~~~al~~-------~p~~~~-----------~~~~la 558 (676)
..--++.+ .|...-..-. ..--|..|...+++...+ +|-+.. -|.+..
T Consensus 189 ~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwI 268 (660)
T COG5107 189 QTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWI 268 (660)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHh
Confidence 65433322 2221111111 112255666666665443 222211 122222
Q ss_pred HHHHH-----cCC-HH-HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005808 559 QFYQD-----LAN-SE-KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (676)
Q Consensus 559 ~~~~~-----~~~-~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (676)
..-.. .|+ .. .---.+++++..-+-.+.+|+.....+...++-+.|+....+++...|. ....++.+|..
T Consensus 269 kwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel 345 (660)
T COG5107 269 KWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYEL 345 (660)
T ss_pred hHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhh
Confidence 22111 111 12 2223466777777778899999999999999999999999999888776 66778888877
Q ss_pred hccHHHHHHHHHHHHh
Q 005808 632 IGEYREAIKDYDAALD 647 (676)
Q Consensus 632 ~g~~~~A~~~~~~al~ 647 (676)
.++-+....+|+++.+
T Consensus 346 ~nd~e~v~~~fdk~~q 361 (660)
T COG5107 346 VNDEEAVYGCFDKCTQ 361 (660)
T ss_pred cccHHHHhhhHHHHHH
Confidence 7777776676766654
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.84 E-value=0.44 Score=44.35 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 429 RELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALE 477 (676)
Q Consensus 429 g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (676)
...++|+..|++++++.+... .++..+..+++.++++++-+..|.+.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 367788888888888776543 3555667777788888888887777664
No 309
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=1.1 Score=38.90 Aligned_cols=123 Identities=17% Similarity=0.122 Sum_probs=51.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHH
Q 005808 388 GIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAA 461 (676)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~ 461 (676)
+..+...+..++|+..|..+-+..-.. ..+....|.+....|+...|+..|..+-...|-. ..+...-+.++..
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 334444455555555555444332211 2233444555555555555555555443322211 1122333344444
Q ss_pred cCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005808 462 LGESVEAIQDLSKAL-EFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (676)
Q Consensus 462 ~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (676)
.|.|+.-....+..- ..+|-...+.-.+|..-++.|++..|.+.|....
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 444444433333221 1122223334444444444555555555444443
No 310
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.72 E-value=0.12 Score=47.89 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHhc----C-c--CcHHHHHHHHHHHHHcCCHHH-------HHHHHHHhhcCC--C----CCHHHHHH
Q 005808 565 ANSEKALECLQQVLYI----D-K--RFSKAYHLRGLLLHGLGQHKK-------AIKDLSSGLGID--P----SNIECLYL 624 (676)
Q Consensus 565 ~~~~~A~~~~~~al~~----~-~--~~~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~--p----~~~~~~~~ 624 (676)
..+++|++.|.-++-. . + .-+..+..+|++|...|+.+. |+..|.+++... | +...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3455566655555421 1 1 124567777888888887544 455555555432 2 12467888
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHH
Q 005808 625 RASCYHAIGEYREAIKDYDAALDLELDSM-EKFVLQCLAFYQ 665 (676)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~ 665 (676)
+|.+..+.|++++|.++|.+++.....+. .....++.-.++
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999998654443 345555555443
No 311
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.70 E-value=0.041 Score=51.84 Aligned_cols=112 Identities=13% Similarity=0.021 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--
Q 005808 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA-- 631 (676)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 631 (676)
....+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++..--
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~ 198 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVS 198 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHH
Confidence 344444556688888888888888888888888888888888888888888888888888888888888877664321
Q ss_pred --hccHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHH
Q 005808 632 --IGEYREAIKDYDAALDLEL-DSMEKFVLQCLAFYQ 665 (676)
Q Consensus 632 --~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~ 665 (676)
-.++-..+......+.--+ .|.......-..||.
T Consensus 199 ~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~ 235 (472)
T KOG3824|consen 199 AIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL 235 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 2223333444443333333 333333444445554
No 312
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.60 E-value=2 Score=45.62 Aligned_cols=137 Identities=15% Similarity=0.086 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcC
Q 005808 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAGEAWKRRGQARAALG 463 (676)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g 463 (676)
.+|.+-.--|+|++|.+.|-.+-..+ .....+...|+|-.....++..-.-.. .-..++..+|..+..+.
T Consensus 739 q~aei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~ 810 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMM 810 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 34444445578888888776542221 112334555666655555443211111 11457777888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005808 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (676)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (676)
.|++|.++|.+.-.. -.+..+++....|++-..+. ..-|++...+-.+|..+...|.-++|.+.+-+
T Consensus 811 ~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 811 EWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 888888877654221 23445555555555433322 23456666666667766666766666665543
No 313
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.59 E-value=0.18 Score=40.32 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=50.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q 005808 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSA---YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (676)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 566 (676)
+.-++..|++-+|+++.+..+...+++... +...|.++..+. ......+....+.+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yLl--------- 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYLL--------- 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHHH---------
Confidence 445566677777777777766666555432 233333333221 11111111111111
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
.+++++.++..+.|..+..++.+|.-+.....|++++.-.++++..
T Consensus 62 --~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 --GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 2445555555555555555555555555555555666555555543
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=1.5 Score=38.24 Aligned_cols=136 Identities=8% Similarity=-0.005 Sum_probs=81.0
Q ss_pred HHcccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--c--HHHHHHHHHHHHHcCCH
Q 005808 528 SSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--F--SKAYHLRGLLLHGLGQH 601 (676)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~--~~~~~~la~~~~~~g~~ 601 (676)
...+..++|+..|...-+..-.. .-+....+.+..+.|+...|+..|..+-...|. - ..+...-+.++...|-|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34556666776666655544332 334556667777777777777777776554331 1 12344456667777777
Q ss_pred HHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808 602 KKAIKDLSSGL-GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 602 ~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (676)
+.-..-.+..- ..+|-...+...||..-++.|++.+|..+|.++.. +...+....+++.+.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 76655544432 22344446667777777788888888888877766 4444444444444443
No 315
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.45 E-value=0.026 Score=33.70 Aligned_cols=32 Identities=38% Similarity=0.736 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
.++..+|.++..+|++++|..+++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667777777777777777777777776664
No 316
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.84 Score=47.58 Aligned_cols=129 Identities=15% Similarity=0.073 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q 005808 500 NAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ- 576 (676)
Q Consensus 500 ~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~- 576 (676)
..++..+...+..++.++..+.. +...+...+....+.-.+...+..+|.+..+..+++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33555555555566666655332 355555566666666677777777777777777777666666555555444444
Q ss_pred HHhcCcCcHHHHHHH------HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005808 577 VLYIDKRFSKAYHLR------GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (676)
Q Consensus 577 al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (676)
+....|.+..+...+ +......|+..++...++++....|.++++...+...
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 555666655544333 6666666677777777777777777665555544444
No 317
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.36 E-value=0.22 Score=38.78 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHhcc
Q 005808 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGE 634 (676)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 634 (676)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666777777777777777777777777777777777766553 3444555555555554
No 318
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=1.4 Score=45.65 Aligned_cols=235 Identities=13% Similarity=0.018 Sum_probs=136.2
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (676)
.+.......|..+-..+..+..+...|+.+.|+..+...++..-. ..-.++.+|.++..+.+|..|-..+........
T Consensus 255 ~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 255 ALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred HhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 444555678888889999999999999988888888887761111 134567889999999999999999999888766
Q ss_pred CcHHHHHHHH-HHHHH--------cCCHHHHHHHHHHH---HhcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808 447 SAGEAWKRRG-QARAA--------LGESVEAIQDLSKA---LEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVK 511 (676)
Q Consensus 447 ~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~ 511 (676)
...-.|..++ -+++. .|+-+.|..+++.. +...|.+..+ ....+.-+...+.
T Consensus 335 WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------------- 401 (546)
T KOG3783|consen 335 WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------------- 401 (546)
T ss_pred hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------
Confidence 5544444444 33321 23444444333322 2222222111 1111111111110
Q ss_pred hCCCCHH--HHHHHHHHHHH--cccHHHHHHHHHHHH---hc-Cccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Q 005808 512 LDKENKS--AYTYLGLALSS--IGEYKKAEEAHLKAI---QL-DRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYID- 581 (676)
Q Consensus 512 ~~~~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al---~~-~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 581 (676)
.++.... .++.++.++.. .....+.. -++..+ .. ++++ .-.+..+|.++..+|+...|..+|....+..
T Consensus 402 ~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~ 480 (546)
T KOG3783|consen 402 LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKES 480 (546)
T ss_pred ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0111110 12222222211 11122222 111111 11 2222 3345678888999999999999888877431
Q ss_pred --c----CcHHHHHHHHHHHHHcCC-HHHHHHHHHHhhcCCCC
Q 005808 582 --K----RFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 582 --~----~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~ 617 (676)
. -.|.+++.+|.++...|. ..++..++.+|-....+
T Consensus 481 ~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 481 KRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred hhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 1 236788999999999888 99999999998877644
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.31 E-value=0.42 Score=39.54 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHhhc-CCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808 585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLG-IDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (676)
Q Consensus 585 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (676)
....+++++++.... +..+.+..++..++ -.|.. -+..+.|+..+.+.|+|+.++++.+..++..|++..+.-..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 466778888887765 44567778888886 44432 36777888888888888888888888888888888765433
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.28 E-value=0.22 Score=38.86 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 005808 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (676)
Q Consensus 403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (676)
.+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34444445555555555555555555555555555555554444
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.27 E-value=0.087 Score=52.82 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (676)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 574 (676)
..|+.-.|-+.+..++...|..+......+.+...+|+|+.+...+..+-..-.....+...+-+.....|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 34555555555555555555555555555555555555555555544433332222333334444445555555555555
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (676)
.-.+...-.++++..--+.....+|-++++.-++++.+.++|.
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 5554444444444444444445555555555555555555543
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.24 E-value=0.33 Score=48.90 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=105.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005808 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469 (676)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (676)
.....|+.-.|-.-...++...|..|......+.+....|+|+.+...+..+-..-.....+...+.+....+|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34567899999998999999999999999999999999999999988887665554444555666777888899999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (676)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (676)
....-++...-.++++....+......|-++++.-.+++.+.++|...
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 998888877777788777777777778889999999999999887643
No 323
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.15 E-value=6.6 Score=43.44 Aligned_cols=229 Identities=16% Similarity=0.089 Sum_probs=128.9
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-------c-------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 005808 418 LIGRGTARAFQRELEAAISDFTEAIQSNPS-------A-------------------GEAWKRRGQARAALGESVEAIQD 471 (676)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~-------------------~~~~~~la~~~~~~g~~~~A~~~ 471 (676)
+..-|......+..++|.+++.++++.-.+ . ....+..+.+..-.+++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 444455666667666777777777653111 0 01344466777788999999888
Q ss_pred HHHHHhcC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCCH---HHHHHHHHHHHHcc
Q 005808 472 LSKALEFE---PN------SADILHERGIVNFKFKDFNAAVEDLS--------ACVKLDKENK---SAYTYLGLALSSIG 531 (676)
Q Consensus 472 ~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~~~~~---~~~~~la~~~~~~g 531 (676)
+..+.... |. .+..++..|..+...|+.+.|...|. .+....+.+. -+..++..++...+
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence 88776542 22 36678888999999999999999998 3333333332 23344555555544
Q ss_pred cHHH----HHHHHHHHHhcCcccH-----HHHHHHHHHHH--HcCCHHHHHHHHHHHHhcC-c--C----cHHHHHHHHH
Q 005808 532 EYKK----AEEAHLKAIQLDRNFL-----EAWGHLTQFYQ--DLANSEKALECLQQVLYID-K--R----FSKAYHLRGL 593 (676)
Q Consensus 532 ~~~~----A~~~~~~al~~~p~~~-----~~~~~la~~~~--~~~~~~~A~~~~~~al~~~-~--~----~~~~~~~la~ 593 (676)
.-.. +...+...-....+.+ .++..+..++. ..-...++...+..+++.. . + ..-++..++.
T Consensus 464 ~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~ 543 (608)
T PF10345_consen 464 SRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGH 543 (608)
T ss_pred ccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4332 3333333222111111 11222211121 1222346666666666544 1 1 1234556666
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCC---CCH-HHH-----HHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 594 LLHGLGQHKKAIKDLSSGLGIDP---SNI-ECL-----YLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p---~~~-~~~-----~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
.++ .|+..+.......+..... +.. ..| -.+...+...|+.++|.....+.-.
T Consensus 544 ~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 544 RLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 666 7888877766666654432 222 333 2455667888999999888776644
No 324
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=3.2 Score=39.22 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=155.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcccHHHHHHHHHH---HHHhC--CCcHHH
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILKEDPM--------YPEALIGRGTARAFQRELEAAISDFTE---AIQSN--PSAGEA 451 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~--~~~~~~ 451 (676)
+.+|......+++++|+..|.+++...-. ...+...++.+|...|++..-.+.... +.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 67788888999999999999999876221 245678899999999987654333322 22221 111111
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHH
Q 005808 452 WKRRGQA-RAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKS 518 (676)
Q Consensus 452 ~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~ 518 (676)
...+..- -.....++.-+..+...++...... ..-..+..++++.|+|.+|+......+.. .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 1111111 1122345555566555554432221 22345677889999999999887766542 233345
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc-----CcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CcHHH-
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKA- 587 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~- 587 (676)
++..-..+|....+..++...+..+-.. .|... ..-..-|.......+|..|..+|-++++-.. .+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 6667778888888888777777665443 23222 2223345566677889999999988886533 22333
Q ss_pred ----HHHHHHHHHHcCCHHHHHHHH--HHhhc-CCCCCHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCCC
Q 005808 588 ----YHLRGLLLHGLGQHKKAIKDL--SSGLG-IDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 588 ----~~~la~~~~~~g~~~~A~~~~--~~al~-~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~ 651 (676)
|..+..+... ..++-...+ ...++ .+....++....+.++. .+.+|..|+..|..-+..+|-
T Consensus 247 ~sLkYmlLSkIMlN--~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIMLN--RREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHHHh--hHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 2333333333 233322222 22333 23344566666666663 456788888888877766553
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.98 E-value=5.1 Score=41.22 Aligned_cols=101 Identities=6% Similarity=-0.097 Sum_probs=76.6
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005808 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (676)
Q Consensus 548 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (676)
|+....-..+-..+.+.|-+.+|...|.+.....|-....+..+..+-.. .-+..-+..+|+.++.....+++.|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 34444445556677788889999999999988888766666555443322 1236778889999998888889999988
Q ss_pred HHHHHHhccHHHHHHHHHHHHhh
Q 005808 626 ASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~~ 648 (676)
-..-..+|..+.+-..|.+|++.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHh
Confidence 88888999999999999998874
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.94 E-value=0.41 Score=40.57 Aligned_cols=84 Identities=12% Similarity=-0.008 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 461 (676)
..+..........++.+++..++..+--+.|+.+..-..-|.++...|+|.+|+..++......+..+...-.++.|+..
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34455555556677888888888777777888888888888888888888888888888777776767666677777776
Q ss_pred cCCH
Q 005808 462 LGES 465 (676)
Q Consensus 462 ~g~~ 465 (676)
+|+.
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 6654
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.66 E-value=0.49 Score=40.10 Aligned_cols=71 Identities=17% Similarity=0.006 Sum_probs=35.5
Q ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q 005808 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (676)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 600 (676)
.++.+++...+...--+.|+.+.....-|.+++..|++.+|+..++...+..+..+...-.++.|+..+|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44455555555444444555555555555555555555555555555544444444444444444444444
No 328
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.62 E-value=9 Score=42.35 Aligned_cols=262 Identities=11% Similarity=-0.012 Sum_probs=130.1
Q ss_pred HHhhccCCCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Q 005808 371 TRISKSKSISVDFRLSRGIAQ---VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (676)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 447 (676)
.......|..+..-....... ...+++..-+..+ ...|.+....+..+......|+.++|.....++......
T Consensus 86 ~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~ 161 (644)
T PRK11619 86 TNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS 161 (644)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Confidence 334444454444433333322 2345555555422 234677777777777888888877777766666544332
Q ss_pred cHHHHHH------------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 005808 448 AGEAWKR------------------RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF-KFKDFNAAVEDLSA 508 (676)
Q Consensus 448 ~~~~~~~------------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~ 508 (676)
.+..... .....+..|+...|......+ +..... ++.... -..+...+...+..
T Consensus 162 ~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al~~~p~~~~~~~~~ 234 (644)
T PRK11619 162 LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKLQNDPNTVETFART 234 (644)
T ss_pred CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHHHHCHHHHHHHhhc
Confidence 2222222 223333344444443333222 111110 111111 01112222111111
Q ss_pred HHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808 509 CVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (676)
Q Consensus 509 al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 583 (676)
..|.. ......++.......+.+.|...+.+......-+ ..++..+|.-....+..++|..++..+.....
T Consensus 235 ---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~- 310 (644)
T PRK11619 235 ---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ- 310 (644)
T ss_pred ---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-
Confidence 11111 1122233333445566677777777654333221 22334444444433336677777776543322
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
+.........+....++++.+...+...-....+.....+.+|+++...|+.++|..+|+++..
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2333444444555788888777777775443445567888888888888888888888888744
No 329
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.54 E-value=0.061 Score=48.64 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=34.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 561 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (676)
....++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445556666666666666666666666666666666666666666666666666554
No 330
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.49 E-value=9.4 Score=43.78 Aligned_cols=100 Identities=22% Similarity=0.185 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---cHHHHHHHHHHHHHhCCCcHHHHH
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQ----R---ELEAAISDFTEAIQSNPSAGEAWK 453 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~ 453 (676)
.+....+++..+.|+.|+..|+++-...|.- -++.+..|.....+ | .+++|+..|++.- -.|..+--|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 556 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYL 556 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHH
Confidence 3444567788899999999999999988865 46777788776653 2 4677777777643 3566677788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005808 454 RRGQARAALGESVEAIQDLSKALEFEPNSAD 484 (676)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 484 (676)
..|.+|..+|++++-++++.-+++..|..|.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 8999999999999999999999999988765
No 331
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=2.1 Score=44.86 Aligned_cols=127 Identities=20% Similarity=0.087 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 005808 400 AISIFDQILKEDPMYPEALIG--RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK-AL 476 (676)
Q Consensus 400 A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 476 (676)
++..+...+..+|.++..+.. +...+...+....+.-.+...+..+|.+..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455445556666555332 355555566666666667777777777777777777766666655555544444 56
Q ss_pred hcCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808 477 EFEPNSADILHER------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (676)
Q Consensus 477 ~~~p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (676)
...|.+......+ +......|+..++...+.++....|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 6666665544433 6666666666777777777777777665554444443
No 332
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=18 Score=44.85 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 478 (676)
.+.|...|++....|+++.|..++-.|.+.. -+.+....|..+...|+...|+..+++.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5566666666666666666666666655543 3455666666666666666666666666643
No 333
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.31 E-value=2.3 Score=34.37 Aligned_cols=92 Identities=21% Similarity=0.209 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hC
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILKEDPM------------YPEALIGRGTARAFQRELEAAISDFTEAIQ-------SN 445 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~ 445 (676)
+..|...+..|-|++|...++++.+.... +.-++..++..+..+|+|++++...++++. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 44566667788999999999988875322 134566777788888888877766665553 33
Q ss_pred CCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 446 PSAGE----AWKRRGQARAALGESVEAIQDLSKAL 476 (676)
Q Consensus 446 ~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al 476 (676)
.+... +.+..+..+..+|+.++|+..|+.+-
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 33322 23344555555666666666665544
No 334
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.03 E-value=0.19 Score=51.15 Aligned_cols=103 Identities=21% Similarity=0.132 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~la~ 457 (676)
++.....|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.....++.++|....+++.++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 444555566666677888999999999999999999998888888765 56677888899999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005808 458 ARAALGESVEAIQDLSKALEFEPNSA 483 (676)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~ 483 (676)
++..++++.+|+.....+....|.+.
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 99999999999999988888888553
No 335
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.90 E-value=1 Score=40.42 Aligned_cols=97 Identities=11% Similarity=-0.072 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--cHH----H
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPS--AGE----A 451 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~----~ 451 (676)
-..+..+|..|...|+++.|++.|.++.+..... .+.++.+..+....+++.....++.++-..... +.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3466778888888888888888888876643322 456667777777778888777777776554222 211 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALE 477 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~ 477 (676)
...-|..++..++|..|...|-.+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 22344555556666666666655443
No 336
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.75 E-value=1.3 Score=36.85 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 005808 378 SISVDFRLSRGIAQVNEG---KYASAISIFDQILK-EDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (676)
..+.+..+.+|+++.... +..+.+.+++.+++ ..|.. -+..++++..+++.++|+.++.+++..++..|++..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455777888888887765 45677888888886 44443 56778889999999999999999999999988887765
Q ss_pred HHH
Q 005808 453 KRR 455 (676)
Q Consensus 453 ~~l 455 (676)
...
T Consensus 109 ~Lk 111 (149)
T KOG3364|consen 109 ELK 111 (149)
T ss_pred HHH
Confidence 443
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.66 E-value=5.3 Score=41.79 Aligned_cols=159 Identities=14% Similarity=0.037 Sum_probs=90.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808 388 GIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (676)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 466 (676)
=......|+++++....... +.-|.- ..-...++..+...|..+.|+... .+++..+.+ ..+.|+.+
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~ 335 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLD 335 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HH
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHH
Confidence 34455688999988777522 222222 344566777777888887777653 334444444 46778888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 005808 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (676)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (676)
.|.+..+ ..+++..|..+|......|+++-|..+|.++- -+..+..+|...|+.+.-.+....+...
T Consensus 336 ~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8877653 23467788888988888898888888887742 2344566777777776555555554433
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (676)
Q Consensus 547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 576 (676)
... ...-.+++..|+.++.++.+.+
T Consensus 403 ~~~-----n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GDI-----NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-H-----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred cCH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 221 1222334446777777666654
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.60 E-value=1.9 Score=38.67 Aligned_cols=99 Identities=12% Similarity=0.017 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CCH----HH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SNI----EC 621 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~ 621 (676)
..++..+|..|.+.|+.+.|++.|.++...... ..+.+..+..+....+++.....++.++-..-. .+. ..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 456778888888888888888888887765432 245677777888888888888888877765422 222 23
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 622 LYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
...-|..+...++|..|...|-.+....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 4455667778889999988887776544
No 339
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=7.1 Score=40.92 Aligned_cols=154 Identities=19% Similarity=0.101 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHHHHHh------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Q 005808 429 RELEAAISDFTEAIQS------------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF------------------ 478 (676)
Q Consensus 429 g~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------ 478 (676)
.-|++|...|.-+... .|-+.+.+..++.+...+|+.+-|..+.++++=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4567777777766553 2444667777777777778877777777776521
Q ss_pred ---CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcccHHHHHHHHHHHHh-----
Q 005808 479 ---EPNSAD---ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLAL-SSIGEYKKAEEAHLKAIQ----- 545 (676)
Q Consensus 479 ---~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~al~----- 545 (676)
.|.+-. +++.....+.+.|-+..|.++++-.++++|. ++.+...+..+| .+..+|+--+..++..-.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 111111 2233334455667777777777777777776 555444444433 344555555555554422
Q ss_pred cCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcC
Q 005808 546 LDRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKR 583 (676)
Q Consensus 546 ~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~ 583 (676)
..|+. ..-..++..|..... -..|...+.+|+...|.
T Consensus 412 ~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 22332 122344555554444 45566667777766663
No 340
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.51 E-value=0.1 Score=49.40 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=36.0
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHH-HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL-RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
.|+++..|...+......|-+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|++|..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34444444444444444444444444444555555544444443 223334444444555555555555444444443
No 341
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.31 E-value=1 Score=47.28 Aligned_cols=97 Identities=16% Similarity=0.045 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 455 (676)
..+...|..+++..+|..+++.|...+...|.+ +.....++.||....+.+.|.+++++|-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 456777888999999999999999999876655 45677889999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q 005808 456 GQARAALGESVEAIQDLSKALEF 478 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~ 478 (676)
..+....|..++|+.+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88889999999999988776544
No 342
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.29 E-value=6.6 Score=41.62 Aligned_cols=213 Identities=13% Similarity=0.063 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH-----
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKE--------------DPMYPEALIGRGTARAFQRELEAAISDFTEAI----- 442 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----- 442 (676)
.-|-.+|...+..=+++-|.+.|.++-.. ....| --..+|.++...|++.+|...|.+.=
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G~enRA 664 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSGHENRA 664 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcCchhhH
Confidence 34566677777777778887777765321 01111 12344555556666666666665421
Q ss_pred -HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH----------HH
Q 005808 443 -QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLS----------AC 509 (676)
Q Consensus 443 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~----------~a 509 (676)
+...+ --.+.++.-++..|..++-..+.++-.+. +-+.| ...+.++...|+.++|+...- -+
T Consensus 665 lEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 665 LEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred HHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 11100 01122233333333333333333222111 11111 123455555666665554321 11
Q ss_pred HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHH
Q 005808 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589 (676)
Q Consensus 510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 589 (676)
-+++....+.+...+..+.....+.-|-++|.+.-. ...+..++...+++++|....++.-+.- +.+++
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~ 808 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYM 808 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccc
Confidence 112222223333333333344444444444433211 1223344455566666655544432222 34555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q 005808 590 LRGLLLHGLGQHKKAIKDLSSG 611 (676)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~a 611 (676)
-.|..+....++++|.+.|.+|
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHh
Confidence 6666666666666666655554
No 343
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.21 E-value=1.1 Score=51.46 Aligned_cols=163 Identities=21% Similarity=0.252 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cccc
Q 005808 486 LHERGIVNFKFKDFNAAVE------DLSA-CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNF 550 (676)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~------~~~~-al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~ 550 (676)
....|......|.+.+|.+ .+.. .-.+.|.....+..++.++...|++++|+..-.++.-. .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4456666777788887777 4442 22346777889999999999999999999988776543 3555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-----C
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-----S 617 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~ 617 (676)
...+.+++...+..++...|...+.++... .|.-.....+++.++...++++.|+.+.+.|++... .
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 778888998889999999999998888753 455556678888899999999999999999987532 1
Q ss_pred ---CHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 618 ---NIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 618 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
....+..+++.+..++++..|....+....+
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2456777888888888888887777666543
No 344
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.19 E-value=0.69 Score=45.87 Aligned_cols=125 Identities=16% Similarity=0.119 Sum_probs=85.8
Q ss_pred hhhhhhhhhhhhhhhhhhcccchh-hhhhhhhHHHH--H---HHHHHHH-hcCCHHHHHHHHHHHHcccCChhH----HH
Q 005808 5 KLLDSRYRLNKTHKTICEIDELVR-VDSVMASAITA--R---IELAKLC-SLRNWSKAIRILDSLLAQSYEIQD----IC 73 (676)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~---~~~~~~~-~~~~y~~Ai~~y~~ai~~~~~~~~----~~ 73 (676)
..+|.++.-+..-+-...+..|.. ..+--.+-++| | ..++.+| ..|+.+.|+.+|.++-.-+.+..- +.
T Consensus 112 ~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~l 191 (466)
T KOG0686|consen 112 YLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCL 191 (466)
T ss_pred cccchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHH
Confidence 445666655555544444444433 12222333444 4 3445666 499999999999997776622222 56
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-------C-CChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 74 NRAFCYSQLELHKHVIRDCDKALQLD-------P-TLLQAYILKGCAFSALGRKEEALSVWEKG 129 (676)
Q Consensus 74 ~ra~~~~~~g~~~~A~~~~~~al~~~-------p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~a 129 (676)
|.-.+-..+|+|.+....-.+|.+-- + -.++..+..|.+.+.+++|..|.+.|-.+
T Consensus 192 n~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 192 NLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77778888999999999999988751 1 13458889999999999999999999777
No 345
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.14 E-value=0.52 Score=37.21 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=35.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccc-----CC-----hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 005808 43 LAKLCSLRNWSKAIRILDSLLAQS-----YE-----IQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100 (676)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai~~~-----~~-----~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p 100 (676)
.......|||..|++.+.+..... +. .....++|..+...|++++|+..+++|+.+-.
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345677888888877766665433 11 11135666666667777777777777666543
No 346
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.09 E-value=4.9 Score=42.50 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=56.3
Q ss_pred HHHHHHcCCHHHHHHHHH----------HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005808 456 GQARAALGESVEAIQDLS----------KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~----------~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 525 (676)
+..+...|+.++|+...- -+-+++....+.+...+..+.....+.-|.+.|.+.-. ...+..
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVq 781 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQ 781 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhh
Confidence 455556666666655321 11122222333444444444455555555555544311 112344
Q ss_pred HHHHcccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 526 ALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQV 577 (676)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (676)
.+...++|.+|....++ .|+. +.+++..|..+....++++|.+.|.++
T Consensus 782 lHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred heeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 55666777777665544 2332 445666677777777777776655544
No 347
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.99 E-value=1.1 Score=51.48 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------
Q 005808 380 SVDFRLSRGIAQVNEGKYASAIS------IFDQIL-KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-------- 444 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 444 (676)
.....+..|......|.+.+|.+ .+.... ...|.....+..++.++...|++++|+..-.++.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34556677777778888887777 554332 356777889999999999999999999888776533
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Q 005808 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE- 515 (676)
Q Consensus 445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~- 515 (676)
.|+....+..++...+..++...|+..+.++... .|.-.....+++.++...++++.|+.+.+.+...+..
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 2344567777888888888888888888777654 3444445667777777788888888888888775321
Q ss_pred -------CHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 005808 516 -------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (676)
Q Consensus 516 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (676)
....+..++..+...+++..|....+....
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 233455566666666666666655555443
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.84 E-value=7.8 Score=40.55 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSK 474 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (676)
+...|..+|...+..|+++-|..+|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555555555555555555544
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.57 E-value=14 Score=38.16 Aligned_cols=179 Identities=14% Similarity=-0.007 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Q 005808 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (676)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 548 (676)
...+.+++... .+..+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++-+.+..+|.+++...-
T Consensus 86 eh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 86 EHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence 33444444433 2444555566666555 33445555555555555555555555555544 555556666665554321
Q ss_pred c------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CcHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808 549 N------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSK-AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (676)
Q Consensus 549 ~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (676)
. -.++|..+-.. --.+.+.-.....+.-.... .... ++..+-.-|....++.+|+..+...++.+..+..
T Consensus 163 ~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 163 PRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred chhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhh
Confidence 1 11222222111 01222222222222221111 1111 1222223344566777777777777777666666
Q ss_pred HHHHHHHHHHH--------------------hccHHHHHHHHHHHHhhCCCc
Q 005808 621 CLYLRASCYHA--------------------IGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 621 ~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p~~ 652 (676)
+...+..-+.. -.++-+++..|++.+..+..+
T Consensus 241 ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 241 ARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 65555554443 345667777777776665544
No 350
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.41 E-value=2.8 Score=41.92 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
--.+..||+++++.+.|+....+.+.++|.....++..|.++..+.+|.+|.+.+--+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777777777777777776655444
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.36 E-value=1.5 Score=42.16 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
+..++..+...|+++.++...++.++.+|-+-.+|.++-.+|...|+...|+..|++.-
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 56788889999999999999999999999999999999999999999999999999984
No 352
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.36 E-value=0.28 Score=31.52 Aligned_cols=29 Identities=38% Similarity=0.363 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 005808 105 AYILKGCAFSALGRKEEALSVWEKGYEHA 133 (676)
Q Consensus 105 a~~~~g~~~~~l~~~~~A~~~~~~al~~~ 133 (676)
++..+|.+|..+|++++|+..+++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 44555666666666666666666665544
No 353
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=10 Score=39.88 Aligned_cols=154 Identities=16% Similarity=0.042 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C------------
Q 005808 463 GESVEAIQDLSKALEF------------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----D------------ 513 (676)
Q Consensus 463 g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~------------ 513 (676)
..|++|...|.-+... .|-+.+.+..++.+...+|+.+-|.....+++=. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4467777777766544 3444566777777777777777777777766521 1
Q ss_pred ----CCCHH---HHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhc----
Q 005808 514 ----KENKS---AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFY-QDLANSEKALECLQQVLYI---- 580 (676)
Q Consensus 514 ----~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~---- 580 (676)
|.+-. +++..-..+.+.|-+..|.++++-.+.++|. +|.+...+..+| .+..+|.=-++.++..-..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 11111 1122223334455566666666666666655 454444444443 2344444444444433211
Q ss_pred -CcCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCC
Q 005808 581 -DKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 581 -~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 617 (676)
-|+ ...-..+|..|..... -+.|...+.+|+...|.
T Consensus 412 ~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 122 1122233444444333 34455555555555543
No 354
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.35 E-value=0.29 Score=46.52 Aligned_cols=88 Identities=9% Similarity=0.041 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH-LTQFYQDLANSEKALECLQQVLYIDKR 583 (676)
Q Consensus 505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~~~ 583 (676)
.+.++....|+++..|...+......|.+.+--..|.++++.+|.+.+.|.. .+.-+...++.+.+...|.+++..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3455555678888899888888888889999999999999999999998877 555667789999999999999999999
Q ss_pred cHHHHHHHH
Q 005808 584 FSKAYHLRG 592 (676)
Q Consensus 584 ~~~~~~~la 592 (676)
+|..|...-
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 988887543
No 355
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.31 E-value=0.32 Score=31.21 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 005808 70 QDICNRAFCYSQLELHKHVIRDCDKALQL 98 (676)
Q Consensus 70 ~~~~~ra~~~~~~g~~~~A~~~~~~al~~ 98 (676)
..+.++|.+|..+|++++|+..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45789999999999999999999999863
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.17 E-value=1 Score=33.49 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCChhH----HHHHHHHHHHhhCHHHHHHHHHHHHH
Q 005808 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQ 97 (676)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~ra~~~~~~g~~~~A~~~~~~al~ 97 (676)
.++-++|.+.+.++|+..+.++++..+++.. +..++.+|...|+|.+++...-.=++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999988744433 34566688999999998886655443
No 357
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.06 E-value=9.8 Score=43.62 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=77.1
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005808 421 RGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAAL----G---ESVEAIQDLSKALEFEPNSADILHERG 490 (676)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 490 (676)
...++.....|+.|+..|++.....|.. .++.++.|.....+ | .+++|+..|++.- -.|.-|--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 3455667788999999999999998876 45777777776543 2 4677777777653 3455677788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005808 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (676)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 520 (676)
.+|...|++++-++++.-+++..|..+..-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 999999999999999999999988887543
No 358
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.05 E-value=2.4 Score=39.37 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (676)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (676)
..+.+.+|.+..+.|++++|..+|.+++....
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 45677788888888888888888888876543
No 359
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=7.4 Score=39.13 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFK------------DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (676)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (676)
..++++.-.+.+..+|+...+|...-.++...- -.++-+.+...+++.+|+.-.+|+....++.+.+.
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~ 124 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH 124 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence 345666666677777766666554433332211 23333444555555555555555555555554332
Q ss_pred --HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808 533 --YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (676)
Q Consensus 533 --~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (676)
+..=++..+++++.+|.+-.+|...=.+.... ....+=+++..+++..++.+..+|.....++.
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 34445555555555555544443332222211 11333444555555555555555555444443
No 360
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.63 E-value=0.4 Score=30.14 Aligned_cols=29 Identities=28% Similarity=0.216 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808 104 QAYILKGCAFSALGRKEEALSVWEKGYEH 132 (676)
Q Consensus 104 ~a~~~~g~~~~~l~~~~~A~~~~~~al~~ 132 (676)
+.|.++|.+-+..++|++|+..|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788888888899999999888888544
No 361
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=9.6 Score=38.17 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=73.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhC-CC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----c-ccHHHHHHH
Q 005808 493 NFKFKDFNAAVEDLSACVKLD-KE--------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----R-NFLEAWGHL 557 (676)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~-~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~l 557 (676)
++...++.+|.++-...+... -. ....|+.+..++...|+...-...+...+... . ......+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 344577888887776655431 11 12456666777777777555555444443321 1 113344555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc--Cc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808 558 TQFYQDLANSEKALECLQQVLYI--DK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 558 a~~~~~~~~~~~A~~~~~~al~~--~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (676)
-+.|...+.|+.|-....+..-- .. ......+.+|.+..-+++|..|.+++-+|+...|.+
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 66677777777777766665311 11 223455667777777777777777777777777764
No 362
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=6.7 Score=39.42 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc----HHHHH
Q 005808 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG--QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE----YREAI 639 (676)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----~~~A~ 639 (676)
-.++-+.+...+++.+|+...+|..+.+++.+.+ ++..=+..++++++.+|.+-.+|...=.+...... ..+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 3456667777888888888888888888888766 35777888888888888887777665555443322 46667
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808 640 KDYDAALDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 640 ~~~~~al~~~p~~~~~~~~~~~~~~ 664 (676)
++..+++.-++.|..+|.++.+.+-
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 7888888888888888887776654
No 363
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.50 E-value=14 Score=35.66 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005808 482 SADILHERGIVNFKFKDFNAAVEDL 506 (676)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~ 506 (676)
++..+..+|..+++.|++.+|..++
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3455555555555555555554444
No 364
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.01 E-value=1.1 Score=35.26 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=47.4
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 005808 76 AFCYSQLELHKHVIRDCDKALQLDPT---------LLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (676)
Q Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~ 134 (676)
-.-.++.|+|.+|+..+.+....... ...+.+.+|.++...|++++|+..++.|+.+..
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34567899999999888887755432 234788899999999999999999999976654
No 365
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.82 E-value=0.54 Score=29.56 Aligned_cols=29 Identities=21% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 005808 71 DICNRAFCYSQLELHKHVIRDCDKALQLD 99 (676)
Q Consensus 71 ~~~~ra~~~~~~g~~~~A~~~~~~al~~~ 99 (676)
.|..+|.+-+..++|++|+.||++||++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999875
No 366
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.34 E-value=0.45 Score=26.97 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 104 QAYILKGCAFSALGRKEEALSVWE 127 (676)
Q Consensus 104 ~a~~~~g~~~~~l~~~~~A~~~~~ 127 (676)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356667777777777777776554
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=2 Score=40.78 Aligned_cols=67 Identities=18% Similarity=0.078 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (676)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (676)
++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+++.+-
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 3444555566666666666666666666666666666666666666666666666666666665543
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.53 E-value=4.5 Score=30.15 Aligned_cols=62 Identities=6% Similarity=0.032 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcccHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI---GRGTARAFQRELEAAISDFTEAI 442 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al 442 (676)
+.-.+..|.-++...+.++|+..++++++..++.+.-+. .+..++...|+|.+.+.+..+=+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777788888888888888888887777655444 44456677777777776654433
No 369
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.33 E-value=1.3 Score=27.44 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHH--HHHHHhhCCC
Q 005808 620 ECLYLRASCYHAIGEYREAIKD--YDAALDLELD 651 (676)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 651 (676)
+.++.+|..+...|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566677777777777777777 3366665554
No 370
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.22 E-value=40 Score=37.34 Aligned_cols=253 Identities=8% Similarity=-0.026 Sum_probs=155.2
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcccHHHHHHHHHHHHHhC
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQSN 445 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~ 445 (676)
.+......++.+...+..+-..+...|++++-...-.++.+..|..+..|.....-.. ..+.-.++...|++++. +
T Consensus 101 t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-d 179 (881)
T KOG0128|consen 101 TLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-D 179 (881)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-c
Confidence 3444456677777888888888889999988888878888888888888766554433 23566778888888875 3
Q ss_pred CCcHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808 446 PSAGEAWKRRGQARAAL-------GESVEAIQDLSKALEFEPN-------SADILHERGIVNFKFKDFNAAVEDLSACVK 511 (676)
Q Consensus 446 ~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (676)
-++...|...+...... ++++.-...|.+++..-.. ....+...-..|...-..++-+.++...+.
T Consensus 180 y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~ 259 (881)
T KOG0128|consen 180 YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK 259 (881)
T ss_pred cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 34555666666555443 4566677777777754221 123444445555555555666677766665
Q ss_pred hCCCCHHH----HHHHH--H-HHHHcccHHHHHHHHHHH-------HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 512 LDKENKSA----YTYLG--L-ALSSIGEYKKAEEAHLKA-------IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (676)
Q Consensus 512 ~~~~~~~~----~~~la--~-~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (676)
.. -+..+ |.... . ......+++.|..-+.+. ++..|.....|..+.......|..-.-...++++
T Consensus 260 ~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 260 QP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERA 338 (881)
T ss_pred cc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 53 22221 11111 1 112234555555443333 3333444555666666777788888777888888
Q ss_pred HhcCcCcHHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808 578 LYIDKRFSKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 578 l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
....+.+...|...+...- .++-.+.+...+-+++...|-....|-
T Consensus 339 ~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~ 385 (881)
T KOG0128|consen 339 VAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWK 385 (881)
T ss_pred HHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHH
Confidence 8777777777777765443 344555666677777776666444443
No 371
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.93 E-value=4.5 Score=36.57 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHHhccHHHHH
Q 005808 568 EKALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAI 639 (676)
Q Consensus 568 ~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 639 (676)
+.|...|-++-.... +++...+.+|..|. ..+.++|+..+-+++++.+. +++++..|+.++.++|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555444432211 44566666666555 34566666666666665332 3566666777777777666653
No 372
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=2.7 Score=39.88 Aligned_cols=71 Identities=23% Similarity=0.181 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005808 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (676)
Q Consensus 555 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (676)
.++=..+...++++.|..+.++.+..+|.++.-+...|.+|.+.|.+.-|+..++..+..-|+++.+-...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 34445666777777777777777777777777777777777777777777777777777777766554433
No 373
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.02 E-value=5.5 Score=33.10 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=58.9
Q ss_pred hhhcccchhhhhhhhhHHHHHHHHHHHH---hcCCHHHHHHHHHHHHcccCChhHHHHHHHHH-HHhhCHHHHHHHHHHH
Q 005808 20 ICEIDELVRVDSVMASAITARIELAKLC---SLRNWSKAIRILDSLLAQSYEIQDICNRAFCY-SQLELHKHVIRDCDKA 95 (676)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~-~~~g~~~~A~~~~~~a 95 (676)
||+++|-..++-+-- --....+.| ..|+..+-+.||-+.-. ..-|..+|.-. ...|+-++=-+.++..
T Consensus 41 ICNiiDaa~C~yvv~----~LdsIGkiFDis~C~NlKrVi~C~~~~n~----~se~vD~ALd~lv~~~kkDqLdki~~~l 112 (161)
T PF09205_consen 41 ICNIIDAADCDYVVE----TLDSIGKIFDISKCGNLKRVIECYAKRNK----LSEYVDLALDILVKQGKKDQLDKIYNEL 112 (161)
T ss_dssp HHHHHHH--HHHHHH----HHHHHGGGS-GGG-S-THHHHHHHHHTT-------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred eeecchhhchhHHHH----HHHHHhhhcCchhhcchHHHHHHHHHhcc----hHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 677766666543311 111223434 46888999999876322 22378888844 4455544444444444
Q ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (676)
Q Consensus 96 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a 129 (676)
..-+..+++-++.+|.+|.++|+..+|-..+.+|
T Consensus 113 ~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 113 KKNEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4445567889999999999999999999999998
No 374
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.37 E-value=29 Score=33.50 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q 005808 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG--HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (676)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 592 (676)
.++..+..+|..+.+.|++.+|..+|-.. +++.... .+.... ..+-.|.....+...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~---------------~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEW---------------STKGYPSEADLFIARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHH---------------HHHTSS--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHH---------------HHhcCCcchhHHHHHH
Confidence 46788999999999999988888777432 1111111 111111 1123344445555544
Q ss_pred HH-HHHcCCHHHHHHHHHHhhcC----CC-----------CCHHHHH-HHHHHHHHhcc---HHHHHHHHHHHHhhCCCc
Q 005808 593 LL-LHGLGQHKKAIKDLSSGLGI----DP-----------SNIECLY-LRASCYHAIGE---YREAIKDYDAALDLELDS 652 (676)
Q Consensus 593 ~~-~~~~g~~~~A~~~~~~al~~----~p-----------~~~~~~~-~la~~~~~~g~---~~~A~~~~~~al~~~p~~ 652 (676)
.+ |...++...|...+....+. +| +.|...+ .+-..-.+.++ |..-.+.|+..++.+|.-
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~ 227 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSF 227 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHH
Confidence 43 66678888888766655543 22 2232111 11111122232 334444555556666777
Q ss_pred HHHHHHHHHHHHHhh
Q 005808 653 MEKFVLQCLAFYQVL 667 (676)
Q Consensus 653 ~~~~~~~~~~~~~~~ 667 (676)
......++..||..-
T Consensus 228 ~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 228 KEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCC
Confidence 777777888887643
No 375
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.34 E-value=0.73 Score=26.11 Aligned_cols=22 Identities=23% Similarity=0.064 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHH
Q 005808 621 CLYLRASCYHAIGEYREAIKDY 642 (676)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~ 642 (676)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 376
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.27 E-value=41 Score=35.10 Aligned_cols=77 Identities=12% Similarity=-0.028 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL 476 (676)
Q Consensus 397 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 476 (676)
++-...++.+++.... +-.+++.++.+|... ..+.-...+++.++.+-++...-..++..|.. ++...+..+|.+++
T Consensus 82 ~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 82 NQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 3333344444444332 234445555555544 22333444444444444444444444444433 44445555555544
No 377
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.96 E-value=2.6 Score=26.20 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 005808 383 FRLSRGIAQVNEGKYASAISI 403 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~ 403 (676)
.++.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344445555555555555555
No 378
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.79 E-value=4 Score=39.30 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (676)
..++..++..+...|+++.++..+++.+..+|.+...|..+...|...|+...|+..|+++-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555555443
No 379
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=34 Score=33.66 Aligned_cols=247 Identities=13% Similarity=0.003 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC--HHHHHHHHH-HHHHcccHHHHHHHHHHHHHhCCCcH-----
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE---DPMY--PEALIGRGT-ARAFQRELEAAISDFTEAIQSNPSAG----- 449 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~--~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~----- 449 (676)
-+..+.+|..+...|++.+-.......-.. -+.. +.....+-. +....+..+.-+..+..+++.....-
T Consensus 48 E~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLR 127 (411)
T KOG1463|consen 48 EQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLR 127 (411)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHH
Confidence 346677888888888887766665554321 1111 111111111 11122334444555555554332221
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCH
Q 005808 450 -EAWKRRGQARAALGESVEAIQDLSKALEF----E--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----KENK 517 (676)
Q Consensus 450 -~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~ 517 (676)
..-..+..+|...++|.+|+......+.. + +.-.+++..-...|+...+..+|...+..+-... |...
T Consensus 128 q~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPql 207 (411)
T KOG1463|consen 128 QSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQL 207 (411)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHH
Confidence 23345788999999999999988776643 2 2235567777888999999999988887765431 2211
Q ss_pred H--HHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---cH---HHHHHHHHHHHHcCCHHHHHHHH--HHHHhcCcCcHHH
Q 005808 518 S--AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---FL---EAWGHLTQFYQDLANSEKALECL--QQVLYIDKRFSKA 587 (676)
Q Consensus 518 ~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~---~~~~~la~~~~~~~~~~~A~~~~--~~al~~~~~~~~~ 587 (676)
. .-..=|..+....+|.-|..+|-++++-... +. ..+..+-.+-...+..++--..+ +.+++....+..+
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~A 287 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDA 287 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHH
Confidence 1 1222356666678999999999999875321 12 33344444555667766654444 3455666667788
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808 588 YHLRGLLLHGL--GQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (676)
Q Consensus 588 ~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (676)
....+.++.+. .+|+.|+..|..-+..+| -+..++..+|.
T Consensus 288 mkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 288 MKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYD 329 (411)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHH
Confidence 88888887663 578888888888776554 44555555553
No 380
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.58 E-value=33 Score=33.42 Aligned_cols=212 Identities=13% Similarity=0.045 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 005808 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (676)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (676)
..-+.+-....+..+..+-++....+++++|....++..++.-- ..-..+|...++++++... ..+...+....
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh 258 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQH 258 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhh
Confidence 33444555566666777777788888888888887777766432 2235567777777776432 22222222222
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHH
Q 005808 496 FKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKAL 571 (676)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~ 571 (676)
.|...+|. .+. ..+. .+-..++.|..++|+..+|++.++...+..|-. ..+.-++...+....-|.+..
T Consensus 259 ~~~~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 259 QSPQHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred hccchhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222221 111 1222 233457888888888888888888877766632 334455666666665555555
Q ss_pred HHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 572 ECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 572 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
..+-+.-++. |......+.-+.+ ++...-+ +..|+ .-...|..-.. ..|++...++++.+|
T Consensus 332 avLakYDdislPkSA~icYTaALL--------K~RAVa~---kFspd---~asrRGLS~AE----~~AvEAihRAvEFNP 393 (556)
T KOG3807|consen 332 AVLAKYDDISLPKSAAICYTAALL--------KTRAVSE---KFSPE---TASRRGLSTAE----INAVEAIHRAVEFNP 393 (556)
T ss_pred HHHHhhccccCcchHHHHHHHHHH--------HHHHHHh---hcCch---hhhhccccHHH----HHHHHHHHHHhhcCC
Confidence 5444433221 2222222221111 1111111 11222 22222222222 247888889999999
Q ss_pred CcHHHHHH
Q 005808 651 DSMEKFVL 658 (676)
Q Consensus 651 ~~~~~~~~ 658 (676)
.-+...+.
T Consensus 394 HVPkYLLE 401 (556)
T KOG3807|consen 394 HVPKYLLE 401 (556)
T ss_pred CCcHHHHH
Confidence 87765443
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.34 E-value=34 Score=33.34 Aligned_cols=212 Identities=15% Similarity=0.047 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 461 (676)
..-+..-....+..+..+-++....+++++|..+.++..++.--. .-..+|...++++++... ..++.......
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh 258 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE----TIYRQSQQCQH 258 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH----HHHhhHHHHhh
Confidence 334445555667788888899999999999999999988876433 235678888888876432 22223333333
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccHHHHH
Q 005808 462 LGESVEAIQDLSKALEFEPNSA--DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~ 537 (676)
.|...+|. .+.+ .+. ..-..++.+..++|+..+|++.++...+..|-.. .++-++...+....-|.+..
T Consensus 259 ~~~~~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 259 QSPQHEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred hccchhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322221 1222 222 2445789999999999999999999888777322 33445555666655555544
Q ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808 538 EAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (676)
Q Consensus 538 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (676)
..+-+.-++. |......+.-+.+ ++...-+ +.. ++.-...|..-.. ..|++.+.++++.+|
T Consensus 332 avLakYDdislPkSA~icYTaALL--------K~RAVa~---kFs---pd~asrRGLS~AE----~~AvEAihRAvEFNP 393 (556)
T KOG3807|consen 332 AVLAKYDDISLPKSAAICYTAALL--------KTRAVSE---KFS---PETASRRGLSTAE----INAVEAIHRAVEFNP 393 (556)
T ss_pred HHHHhhccccCcchHHHHHHHHHH--------HHHHHHh---hcC---chhhhhccccHHH----HHHHHHHHHHhhcCC
Confidence 4444332221 2222221111111 1111111 112 2233333322222 358888999999999
Q ss_pred CCHHHHHH
Q 005808 617 SNIECLYL 624 (676)
Q Consensus 617 ~~~~~~~~ 624 (676)
.-+..+..
T Consensus 394 HVPkYLLE 401 (556)
T KOG3807|consen 394 HVPKYLLE 401 (556)
T ss_pred CCcHHHHH
Confidence 87655443
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.25 E-value=2.5 Score=40.13 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a 129 (676)
+...+..|...|.+.+|+..++++++++|-+-.-+..+-.++..+|+--.|.+.|++-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3466678999999999999999999999999999999999999999999999999887
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.53 E-value=20 Score=36.81 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HH--HHHHHHHHHcccHHHHHHHHHHHHHh
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--AL--IGRGTARAFQRELEAAISDFTEAIQS 444 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~--~~la~~~~~~g~~~~A~~~~~~al~~ 444 (676)
......+..++..++|..|..++..+...-|.... .+ ...|..++..-++.+|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567788899999999999999999886343333 23 33455567788999999999988765
No 384
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.27 E-value=14 Score=33.46 Aligned_cols=70 Identities=21% Similarity=0.171 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHcCCHHHH
Q 005808 500 NAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----FLEAWGHLTQFYQDLANSEKA 570 (676)
Q Consensus 500 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A 570 (676)
+.|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+. +++++..++.++..+|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555444432221 133555555555554 34556666666666655432 256666666666666666655
No 385
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=66 Score=35.83 Aligned_cols=243 Identities=15% Similarity=0.030 Sum_probs=122.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 005808 390 AQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468 (676)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 468 (676)
.+....-|.-|+.+.+.- ..+++. ...+...|.-++..|++++|...|-+.+..-... .+. .-+.......+-
T Consensus 343 iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-~Vi----~kfLdaq~IknL 416 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-EVI----KKFLDAQRIKNL 416 (933)
T ss_pred HHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-HHH----HHhcCHHHHHHH
Confidence 445556677777665542 222222 4556677888888888888888888876532111 110 011111222233
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcccHHHHHHHHHHHHh
Q 005808 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY---TYLGLALSSIGEYKKAEEAHLKAIQ 545 (676)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~ 545 (676)
..+++...+..-.+.+--..+-.+|.+.++.+.-.++.++ .+. .... -..-.++.+.+-.++|.....+.-.
T Consensus 417 t~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 417 TSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDK-GEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 3445555544444444455666778888777665444433 221 1110 1112233333444444433332211
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-C-CCCHHH-
Q 005808 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-D-PSNIEC- 621 (676)
Q Consensus 546 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~- 621 (676)
+. ..+-.++...++|++|+.++... .|. -.......|..++.. .+++-...+-+.+.. . +.....
T Consensus 492 ----he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~ 560 (933)
T KOG2114|consen 492 ----HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSL 560 (933)
T ss_pred ----CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchh
Confidence 11 12334556678888888887753 222 234455566666653 445555555444432 1 111110
Q ss_pred ---HHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808 622 ---LYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 622 ---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
..-.-.+..-.+++..-..+++...+..|+.++
T Consensus 561 s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 561 SNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred hcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 011223344566777777777777777777665
No 386
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.25 E-value=44 Score=32.00 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----CCCCHHH--
Q 005808 555 GHLTQFYQDLANSEKALECLQQVLYI------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNIEC-- 621 (676)
Q Consensus 555 ~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~-- 621 (676)
..++.++.+.|.|.+|+......+.. .+.-...+..-..+|....+..++...+..|-.. -|....+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 45666777888888888776665432 2233455666677777777777777666655322 2322222
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 622 LYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
-..-|.....-.+|..|..+|-++++-
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhc
Confidence 223355556667788888888777763
No 387
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.90 E-value=30 Score=38.30 Aligned_cols=191 Identities=14% Similarity=0.025 Sum_probs=109.8
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 005808 421 RGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499 (676)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 499 (676)
.-.++.+..-|+-|+...+.- ..+++. ..++...|..++..|++++|...|-+.+..-.. +.+ ..-+....+.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-s~V----i~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-SEV----IKKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-HHH----HHHhcCHHHH
Confidence 345566667778887765442 222222 456777899999999999999999998865321 111 1122344455
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDLANSEKALECLQQV 577 (676)
Q Consensus 500 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~a 577 (676)
.+-..+++...+..-.+.+-...|-.+|.++++.++-.+..++ .+.-... .-..-.++.+.+-.++|.-...+.
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 5556667777666656666666788899999998776555443 3311000 111122333344444554443332
Q ss_pred HhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHH
Q 005808 578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHA 631 (676)
Q Consensus 578 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 631 (676)
- .+. ..+-.++...++|++|+.++... .|+. .......|..+..
T Consensus 490 ~----~he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~ 534 (933)
T KOG2114|consen 490 K----KHE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE 534 (933)
T ss_pred c----cCH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh
Confidence 1 122 22345667789999999998763 2322 2344445555544
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.44 E-value=47 Score=31.79 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILK 409 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~ 409 (676)
-+...++++..|+..+|+.-++.-+.
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455667777777777777766554
No 389
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=82.06 E-value=61 Score=32.80 Aligned_cols=32 Identities=19% Similarity=0.021 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (676)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 583 (676)
...+.+|.+..-+++|..|.+++-+++...|.
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 33444555555555555555555555555543
No 390
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.05 E-value=2.5 Score=43.09 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC---------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 73 CNRAFCYSQLELHKHVIRDCDKALQLD---------PTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 73 ~~ra~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
..+...+.-+|+|..|++..+- |+++ +-++..+|..|-+|+.+++|.+|++.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555678889999999997654 4433 2356689999999999999999999999995
No 391
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.88 E-value=46 Score=31.90 Aligned_cols=99 Identities=9% Similarity=0.030 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH---HH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI---EC 621 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 621 (676)
.+++.++|..|.+.++.+.+.+++.+.+...- +-......+|.+|..+.-.++.++.....++...+.. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44555555555555555555555555443221 1112233444444444444444444444444433211 12
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 622 LYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
-...|...+...+|.+|...+..++...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2233444445555555555555555443
No 392
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.12 E-value=7.2 Score=37.22 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
+...+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--.|.+.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445566666777777777777777777766677777777777777766666655544
No 393
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.12 E-value=23 Score=33.75 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhcCcccHHHH
Q 005808 503 VEDLSACVKLDKENKSAYTYLGLALSSI--GEYKKAEEAHLKAIQLDRNFLEAW 554 (676)
Q Consensus 503 ~~~~~~al~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 554 (676)
+.++..+++.+|.+-.+|...-.++... .++..-+...++.++.++.+-..|
T Consensus 94 ld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W 147 (328)
T COG5536 94 LDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVW 147 (328)
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccccee
Confidence 3444444444455444444444433332 334444444444444444444433
No 394
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.73 E-value=6.3 Score=38.53 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005808 88 VIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147 (676)
Q Consensus 88 A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~ 147 (676)
|+..|.+|+.+.|++..+|..+|.++...|+.=+|+=.|-+++.-...++.+...+..+-
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999866555566655554433
No 395
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=80.60 E-value=41 Score=29.89 Aligned_cols=186 Identities=15% Similarity=0.108 Sum_probs=114.0
Q ss_pred CCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcccHHHHHHHHHHHHHhCCCcHHH
Q 005808 378 SISVDFRLSRGIAQVN-EGKYASAISIFDQILKEDPMYPEALIGRGTARA-----FQRELEAAISDFTEAIQSNPSAGEA 451 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~ 451 (676)
...|+....+|..+-. +.+|++|..+|..--+.+. .+..-+.+|..++ ..++...|+..+..+-. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 3457777777776543 5789999998887655443 3555555555443 24578889999988765 566777
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 452 WKRRGQARAAL-----G--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (676)
Q Consensus 452 ~~~la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (676)
-..+|.++..- + +..+|.+++.++-... +..+.+.+...|+.-. ++ +....|..... ...+
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p-~~~~ 175 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKP-LDRA 175 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCC-cchh
Confidence 77777776543 2 3778999999887665 5566666666665432 11 11112311100 0123
Q ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 005808 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYI 580 (676)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 580 (676)
..+....+.+.|.++--++-++ +++.+-.++.+.|.. -.+-++|..+-.++.++
T Consensus 176 ~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 176 ELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 4444556778888877777665 345666666666653 23466677666666554
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.35 E-value=40 Score=32.21 Aligned_cols=79 Identities=19% Similarity=0.115 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhcc
Q 005808 567 SEKALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGE 634 (676)
Q Consensus 567 ~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~ 634 (676)
....++.+.+++.... -.......+|..|+..|++++|+.+|+.+....... ..+...+..|+..+|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 3344555555554322 123456678899999999999999999886543321 3566778888888888
Q ss_pred HHHHHHHHHHH
Q 005808 635 YREAIKDYDAA 645 (676)
Q Consensus 635 ~~~A~~~~~~a 645 (676)
.+..+.+.-+.
T Consensus 234 ~~~~l~~~leL 244 (247)
T PF11817_consen 234 VEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHH
Confidence 88777665443
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.73 E-value=8.2 Score=32.99 Aligned_cols=54 Identities=22% Similarity=0.138 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 005808 69 IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA 122 (676)
Q Consensus 69 ~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A 122 (676)
......+|...+..|+|.-|...++.++..+|++.++...++.+|.++|.-.+.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 333567888899999999999999999999999999999999999998865543
No 398
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.55 E-value=1.2e+02 Score=34.65 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh----HHHHH-HHHHHHcCCHHHHHHHHHHH
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILK-GCAFSALGRKEEALSVWEKG 129 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~~-g~~~~~l~~~~~A~~~~~~a 129 (676)
+...-..++...+|++|+..++-...-+|.-.. ...+. |.-++.+|++++|+..|.++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 334445566666777777777766654554221 11112 66788999999999999988
No 399
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=78.93 E-value=7.8 Score=37.85 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 005808 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (676)
Q Consensus 502 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 563 (676)
|..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666655555554433334455555555444
No 400
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=78.80 E-value=70 Score=31.52 Aligned_cols=184 Identities=14% Similarity=0.025 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (676)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (676)
-++|+.+-.-...+.|..++++-.++.+.++..+...=...--..+-+...+.. .+..+-.+++...+.+++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~--------lW~r~lI~eg~all~rA~ 283 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRS--------LWDRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchh--------hhhHHHHHHHHHHHHHHH
Confidence 477888888888888888888777776665432211100000000001111111 222334556666677766
Q ss_pred hcCc-ccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CC
Q 005808 545 QLDR-NFLEAWGHLTQFYQD-----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DP 616 (676)
Q Consensus 545 ~~~p-~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 616 (676)
.... .-....-.++.++.. .-+|..-..+|.-.....|+ |.+-.+.+.......-...++...+-.... -.
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 5532 222222222223222 23566666667666666664 555666677776666677777777766554 22
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
...-.+-..|..+.++|+.++|...|++++.+.++..+..+
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 33456677889999999999999999999999988877543
No 401
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.67 E-value=4.1 Score=26.64 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 622 LYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
.+.+|.+|..+|+.+.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999985
No 402
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=78.08 E-value=93 Score=32.51 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 622 LYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
+..-|.-|.+.|+...|..+|.+++.....
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 344567788899999999999999887653
No 403
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=77.62 E-value=76 Score=31.28 Aligned_cols=189 Identities=10% Similarity=-0.019 Sum_probs=112.2
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (676)
Q Consensus 430 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (676)
--++|+..-.-...+.|..++++-.++.+.++..+...=...=-..+-+...+...| ..+-.+++...+.++
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA 282 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHH
Confidence 357888888888899999999888777766544322110000000001111122222 233456777777777
Q ss_pred HHhC-CCCHHHHHHHHHHHHH-----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Q 005808 510 VKLD-KENKSAYTYLGLALSS-----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--D 581 (676)
Q Consensus 510 l~~~-~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~ 581 (676)
.... |......-.++.++.. .-+|..-..+|.-.....|. +.+-.+.+....+..-...++...+-.... -
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 7654 3333333334444432 23566666666666665555 455555666655555566667766665543 1
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (676)
Q Consensus 582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (676)
......+...|.++.+.|+.++|...|++++.+.++..+..+....
T Consensus 362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 2334556778999999999999999999999998887665554443
No 404
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.83 E-value=64 Score=30.58 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=13.7
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 005808 419 IGRGTARAFQRELEAAISDFTEAIQSNP 446 (676)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (676)
..+|.+..+.|+|++.+.++.+++..++
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 3444444555555555555555554443
No 405
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.82 E-value=6.2 Score=40.28 Aligned_cols=99 Identities=16% Similarity=0.052 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 005808 553 AWGHLTQFYQDLANSEKALECLQQVLY--------IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624 (676)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 624 (676)
....+.+++.-.|+|..|++.++..-- ..+-+...++.+|.+|+.+++|.+|++.|...+-.-......+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345666778888999999888765411 112334568888889999999999999888876432111101111
Q ss_pred HHHHHH-HhccHHHHHHHHHHHHhhCCC
Q 005808 625 RASCYH-AIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 625 la~~~~-~~g~~~~A~~~~~~al~~~p~ 651 (676)
...-+. -.+..++....+--++.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 111111 123455555666666667775
No 406
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=76.72 E-value=1e+02 Score=32.23 Aligned_cols=29 Identities=14% Similarity=-0.028 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKEDP 412 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 412 (676)
.-.+|...+..|+|+-|...|+.+.+...
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 44689999999999999999999877543
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.91 E-value=6.3 Score=25.77 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILK 409 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~ 409 (676)
+.+|..|...|+++.|..+++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677778888888888888887774
No 408
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=75.83 E-value=12 Score=31.97 Aligned_cols=52 Identities=25% Similarity=0.226 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 432 (676)
.+..+..+...+..|++.-|..+.+.++..+|++..+...++.++...|.-.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 6788888999999999999999999999999999999999999888877543
No 409
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.19 E-value=8 Score=22.64 Aligned_cols=12 Identities=33% Similarity=0.241 Sum_probs=4.3
Q ss_pred HHHHHHHHhcCC
Q 005808 469 IQDLSKALEFEP 480 (676)
Q Consensus 469 ~~~~~~al~~~p 480 (676)
...|++++...|
T Consensus 7 r~i~e~~l~~~~ 18 (33)
T smart00386 7 RKIYERALEKFP 18 (33)
T ss_pred HHHHHHHHHHCC
Confidence 333333333333
No 410
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=74.82 E-value=8.8 Score=22.46 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 396 KYASAISIFDQILKEDPMYPEALIGRG 422 (676)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la 422 (676)
+.+.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555555555555444433
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.26 E-value=62 Score=33.26 Aligned_cols=61 Identities=21% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHcccHHHHHHHHHHHHhc
Q 005808 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKS--AYTYL--GLALSSIGEYKKAEEAHLKAIQL 546 (676)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 546 (676)
....+..++..++|..|.+.+..+...-|.... .+..+ |.-++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445667778899999999999998875343333 33333 44456678888999999887764
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=73.72 E-value=83 Score=29.81 Aligned_cols=30 Identities=7% Similarity=0.129 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALEFEPN 481 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 481 (676)
+..++.+....|+|++.+.++.+++..+|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 345667777777777777777777776554
No 413
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.32 E-value=57 Score=31.20 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHH
Q 005808 398 ASAISIFDQILKEDPMYPEALIGRGTARAF--------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL--GESVE 467 (676)
Q Consensus 398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--g~~~~ 467 (676)
..|++.-...+..+|....+|...-.+... ..-++.-+.++..++..+|.+...|...-.++... .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 356666666666676665555544444333 11234455566667777777766666655555443 44566
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005808 468 AIQDLSKALEFEPNSADILHERGIVN------FKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (676)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 523 (676)
-+...+++++.++.+-.+|...-.+. .....+..-.++-..++..++.+..+|...
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 66666667777766655544332222 222233333444455555566666655544
No 414
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.54 E-value=1.6e+02 Score=32.72 Aligned_cols=184 Identities=8% Similarity=-0.100 Sum_probs=102.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSA----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 534 (676)
.....+.+.|...+.+......-+. .++..+|.-....+...+|...+..+.... .+...+-....+....++++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHH
Confidence 3344556666666665433332221 123333333333322445555555443222 12233333344444667776
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------c---Cc-----HHH
Q 005808 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-------------------K---RF-----SKA 587 (676)
Q Consensus 535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------~---~~-----~~~ 587 (676)
.+..++..+-..........+.+|+.+...|+.++|...|+++.... + .. ...
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~ 409 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGP 409 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccCh
Confidence 66666655433333445666777777777777777777777763210 0 00 012
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
....+..+...|....|...+..++.. .++.-...++.+....|.++.|+....++
T Consensus 410 ~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 410 EMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 344567777888888888888877764 23566677788888888888877666543
No 415
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.76 E-value=2e+02 Score=32.98 Aligned_cols=113 Identities=12% Similarity=-0.057 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcccH--HHHHHHHHHHHHhCCCcHH----
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKED----PMYPEALIGRGTARAFQREL--EAAISDFTEAIQSNPSAGE---- 450 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~---- 450 (676)
..-+..++..|...|..++|++++.+..... +.....+-..-..+...+.. +-..++-.-.+..+|....
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeee
Confidence 4456788889999999999999999987733 33334444444444444433 4455554444544443311
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 005808 451 ---------AWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVN 493 (676)
Q Consensus 451 ---------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 493 (676)
.-.....-+......+-++.+++.++..+.. ....+..++..|
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 0001122234556677778888887766554 333344444444
No 416
>PF12854 PPR_1: PPR repeat
Probab=70.11 E-value=11 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808 619 IECLYLRASCYHAIGEYREAIKDYDA 644 (676)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (676)
...|..+...|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45566666666666666666666553
No 417
>PF12854 PPR_1: PPR repeat
Probab=70.00 E-value=13 Score=22.65 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 103 LQAYILKGCAFSALGRKEEALSVWEK 128 (676)
Q Consensus 103 ~~a~~~~g~~~~~l~~~~~A~~~~~~ 128 (676)
.-.|..+-..|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34677777777777777777777654
No 418
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.71 E-value=1.2e+02 Score=29.90 Aligned_cols=101 Identities=10% Similarity=-0.036 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPE---ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG--- 449 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--- 449 (676)
.-.+++..+|..|.+-|+-+.|.+.+.+..+..-. ..+ ....+|..|....-..+.++-.+..++...+..
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN 181 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 33566777777777777777777777776653221 122 233445555444434444444444444433321
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005808 450 EAWKRRGQARAALGESVEAIQDLSKALEFE 479 (676)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 479 (676)
..-...|...+...++.+|..+|-..+...
T Consensus 182 RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 182 RLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 122234555566667777777776665543
No 419
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.71 E-value=34 Score=31.43 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=34.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 561 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (676)
+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4445555666666666666666555555555555666666666666666665555553
No 420
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=69.62 E-value=69 Score=27.18 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (676)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (676)
+.....+.+++.++..++.++..+..+..+|
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly 51 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELY 51 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHH
Confidence 3344444444444444333333333333333
No 421
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.77 E-value=98 Score=28.61 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=55.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH
Q 005808 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (676)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 449 (676)
..++..+..++|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3567788999999999999999999999999999999999999999999999999988764
No 422
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=67.82 E-value=1.3e+02 Score=29.64 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IEC 621 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 621 (676)
.+++.+.+..|.+.|+.+.|.+.+.+..+..- +-......+|..|....-..+.++-.+..++...+. -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 45666666666666666666666666544321 112233445555544433333333333333333221 122
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 622 LYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
....|...+...+|.+|...|-.++...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 3334444555566666666666665543
No 423
>PF13041 PPR_2: PPR repeat family
Probab=67.41 E-value=31 Score=23.00 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=8.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 005808 489 RGIVNFKFKDFNAAVEDLSAC 509 (676)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~a 509 (676)
+-..+.+.|++++|.+.|++.
T Consensus 9 li~~~~~~~~~~~a~~l~~~M 29 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEM 29 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHH
Confidence 333333333333333333333
No 424
>PRK12798 chemotaxis protein; Reviewed
Probab=67.24 E-value=1.6e+02 Score=30.34 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005808 462 LGESVEAIQDLSKALEFEPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (676)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (676)
..+...|+..|+.+--..|... -++..-..+....|+.+++..+..+.+.....+
T Consensus 161 ~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S 218 (421)
T PRK12798 161 ATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHS 218 (421)
T ss_pred ccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccC
Confidence 3445555555555544444321 122222333344455555444444444444333
No 425
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=66.20 E-value=82 Score=26.73 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=27.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005808 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (676)
...+.....+.+++.++..++.++..+..+..+|...+ ..+.+..+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34456666677777766666666666666666665442 333344433
No 426
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.95 E-value=42 Score=28.14 Aligned_cols=54 Identities=24% Similarity=0.158 Sum_probs=30.3
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
+..+|+-++--+.+....+....+|..+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345555555555555555544555777777777777777777777777776654
No 427
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=65.59 E-value=13 Score=36.70 Aligned_cols=127 Identities=16% Similarity=0.094 Sum_probs=72.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q 005808 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567 (676)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 567 (676)
..+...+..+++..|..-+.++...-...+ ..+..+... +.....+.-.....+++.+-...+.+
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s------------~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~ 291 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQS------------RDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGR 291 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccc------------ccccccccc---ccccccccccccccchHHhcccccCC
Confidence 345667777888888877777665321100 000000000 01111111123344466666667777
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005808 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (676)
Q Consensus 568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (676)
..|+..-..++..++....+++..+..+....++++|++.+..+....|++..+...+..+-
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 77776666666666666677777777777777777777777777777777665555444443
No 428
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.17 E-value=20 Score=26.73 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHH
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKA 95 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~a 95 (676)
+..+|.-+-+.|++.+|+..|+++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334444444444444444444333
No 429
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=64.67 E-value=11 Score=35.16 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=55.3
Q ss_pred HhcCCHHHHHHHHHHHHccc-CChhH------------HHHHHHHHHHhhC-HHHHH-HHHHHHHH-hC-CCChhHHHH-
Q 005808 47 CSLRNWSKAIRILDSLLAQS-YEIQD------------ICNRAFCYSQLEL-HKHVI-RDCDKALQ-LD-PTLLQAYIL- 108 (676)
Q Consensus 47 ~~~~~y~~Ai~~y~~ai~~~-~~~~~------------~~~ra~~~~~~g~-~~~A~-~~~~~al~-~~-p~~~~a~~~- 108 (676)
|-.|+|+.|+++..-||+.+ +-|.- .+.-|...+..|+ ++-.. ..+..... .| |+-+.|.+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 45699999999999999987 33322 2344445555554 21222 12222221 11 555555444
Q ss_pred -HHHHHH---------HcCCHHHHHHHHHHHHhhccCCh
Q 005808 109 -KGCAFS---------ALGRKEEALSVWEKGYEHALHQS 137 (676)
Q Consensus 109 -~g~~~~---------~l~~~~~A~~~~~~al~~~~~~~ 137 (676)
.|.+++ ..++...|...+++|++++|..+
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 455552 34678899999999999888754
No 430
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.52 E-value=1.6e+02 Score=32.57 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=10.7
Q ss_pred cCCHHHHHHHHHHHHhcCcC
Q 005808 564 LANSEKALECLQQVLYIDKR 583 (676)
Q Consensus 564 ~~~~~~A~~~~~~al~~~~~ 583 (676)
.+++.+|+..-+...++.|.
T Consensus 379 And~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred ccCHHHHHHHHHHHhccCCc
Confidence 35555555555555555443
No 431
>PF13041 PPR_2: PPR repeat family
Probab=64.12 E-value=40 Score=22.42 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 451 AWKRRGQARAALGESVEAIQDLSKALEF 478 (676)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 478 (676)
.|..+...+.+.|++++|.++|+++.+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4445555555666666666666655543
No 432
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=62.54 E-value=1.9e+02 Score=29.61 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH--HHHHHHHHHcccHHHHHHHHHH
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEAL--IGRGTARAFQRELEAAISDFTE 440 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~--~~la~~~~~~g~~~~A~~~~~~ 440 (676)
...+..++..++|..|...|..++...++. ...+ ...|..++..-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345668899999999999999999875432 2223 3445556778889999999985
No 433
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.55 E-value=17 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 105 AYILKGCAFSALGRKEEALSVWEKGYE 131 (676)
Q Consensus 105 a~~~~g~~~~~l~~~~~A~~~~~~al~ 131 (676)
-+..++.-+-+.|++++|+.+|+.|++
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455566667788889999999888853
No 434
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.47 E-value=58 Score=25.61 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=42.8
Q ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHH
Q 005808 90 RDCDKALQLD-PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLE 145 (676)
Q Consensus 90 ~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 145 (676)
+++.++-..+ |--+-.|-.+|.+|...|+-+.|++-|+.--.+.|+......+++.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk 114 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMK 114 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHH
Confidence 3444544433 2234478889999999999999999999988899998888777754
No 435
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.41 E-value=51 Score=36.06 Aligned_cols=181 Identities=16% Similarity=0.114 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHH---HcCCHHHHHHHHHHHHhcC-CCCHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE------AWKRRGQARA---ALGESVEAIQDLSKALEFE-PNSAD 484 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~~~ 484 (676)
++...++-..|....+|+.-+...+..-. -|+... +.+..+.++. .-|+-++|+...-.+++.. |-.++
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 45555555666666666665555544332 232211 1111222221 2245555655555555432 33345
Q ss_pred HHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcCcccHHHH
Q 005808 485 ILHERGIVNFK---------FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE-YKKAEEAHLKAIQLDRNFLEAW 554 (676)
Q Consensus 485 ~~~~la~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 554 (676)
.+...|.+|-. .+..+.|+.+|+++++..|... .-.+++.++...|. ++...+. ..+-
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~El-----------q~Ig 347 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLEL-----------QQIG 347 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHH-----------HHHH
Confidence 55555555432 2334455555555555555422 12233333333332 1111111 1111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (676)
Q Consensus 555 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (676)
..++.++.+.|..++-..+++-+. ++. +-.-.++|.+|+..-+...++.|....
T Consensus 348 mkLn~LlgrKG~leklq~YWdV~~---------y~~---asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 348 MKLNSLLGRKGALEKLQEYWDVAT---------YFE---ASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred HHHHHHhhccchHHHHHHHHhHHH---------hhh---hhhhccCHHHHHHHHHHHhccCCceeh
Confidence 223334444444444433333221 111 112346888999999999888876433
No 436
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.66 E-value=1.4e+02 Score=32.13 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=10.4
Q ss_pred HHHHcCCHHHHHHHHHH
Q 005808 560 FYQDLANSEKALECLQQ 576 (676)
Q Consensus 560 ~~~~~~~~~~A~~~~~~ 576 (676)
+|...|+++++.+.+..
T Consensus 730 ~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 45556777766665544
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.55 E-value=2.2e+02 Score=29.11 Aligned_cols=93 Identities=12% Similarity=-0.049 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--------cHHH
Q 005808 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--------FLEA 553 (676)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~ 553 (676)
++..+|..|...|+++.|++.|-++-...... ...+.++..+-...|+|..-..+-.++...... .+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 55666777777777777777777754443322 244555566666677777776666666554100 0223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 554 WGHLTQFYQDLANSEKALECLQQV 577 (676)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~a 577 (676)
...-|.+....++|..|..++-.+
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444445555666666665544
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.96 E-value=2.2e+02 Score=30.72 Aligned_cols=101 Identities=23% Similarity=0.182 Sum_probs=50.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q 005808 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (676)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 572 (676)
..+.|+++.|.++..++ ++..-|..||.+....+++..|.+++.++... ..|-.++...|+.+.-..
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHH
Confidence 34566666666554432 44555666777777777777777777665432 122222333444332222
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (676)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (676)
.-..+-+....+.. -.+++..|+++++++.+...
T Consensus 714 la~~~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 22222221211111 13456677777777766654
No 439
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.76 E-value=18 Score=20.73 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=8.2
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 005808 557 LTQFYQDLANSEKALECLQQ 576 (676)
Q Consensus 557 la~~~~~~~~~~~A~~~~~~ 576 (676)
+...|.+.|++++|.+.+++
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 33334444444444444433
No 440
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.07 E-value=36 Score=31.07 Aligned_cols=47 Identities=19% Similarity=-0.005 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
..++..++.+...|+ +.++..++.++...|+.++|.....++..+.|
T Consensus 129 ~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344455555555664 66667777777777777777777777777777
No 441
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.62 E-value=2.3e+02 Score=29.18 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808 485 ILHERGIVNFKFKDFNAAVEDLSACVK 511 (676)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (676)
.+..-|.+.+.+|+-++|.+.++.+..
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344567788888888888888887754
No 442
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.50 E-value=28 Score=26.02 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=13.7
Q ss_pred HhcCCHHHHHHHHHHHHcc
Q 005808 47 CSLRNWSKAIRILDSLLAQ 65 (676)
Q Consensus 47 ~~~~~y~~Ai~~y~~ai~~ 65 (676)
=..|+|.+|+.+|.++|+.
T Consensus 17 D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 3577888888888777663
No 443
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=51.74 E-value=3.8e+02 Score=29.80 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=16.4
Q ss_pred HHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 628 CYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
-++..|++++|++.+++ +.+-|.+...
T Consensus 514 ~~~~~g~~~~AL~~i~~-L~liP~~~~~ 540 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEK-LDLIPLDPSE 540 (613)
T ss_dssp HHHHTT-HHHHHHHHHH-TT-S-S-HHH
T ss_pred HHHHcCCHHHHHHHHHh-CCCCCCCHHH
Confidence 34678999999988876 4566765443
No 444
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=50.83 E-value=7.9e+02 Score=33.25 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV 666 (676)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 666 (676)
.+.+...|....++|+.++|-..|..|++++-..+.+|..-|.-..+.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~ 2859 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNR 2859 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 467778899999999999999999999999988888887766655443
No 445
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=50.40 E-value=24 Score=26.36 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=4.0
Q ss_pred CHHHHHHHHHH
Q 005808 51 NWSKAIRILDS 61 (676)
Q Consensus 51 ~y~~Ai~~y~~ 61 (676)
+|.+|..+|..
T Consensus 21 ~y~eA~~~Y~~ 31 (75)
T cd02677 21 DYEAAFEFYRA 31 (75)
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 446
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=50.00 E-value=68 Score=26.57 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHcccCChhHH
Q 005808 41 IELAK-LCSLRNWSKAIRILDSLLAQSYEIQDI 72 (676)
Q Consensus 41 ~~~~~-~~~~~~y~~Ai~~y~~ai~~~~~~~~~ 72 (676)
+++.+ ++..|++++|..+|-+||..++++...
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 45554 567899999999999999999877764
No 447
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=50.00 E-value=37 Score=19.91 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 005808 556 HLTQFYQDLANSEKALECLQQV 577 (676)
Q Consensus 556 ~la~~~~~~~~~~~A~~~~~~a 577 (676)
.+...|.+.|++++|.+.|.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444445555555444444
No 448
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=49.28 E-value=2.1e+02 Score=26.17 Aligned_cols=32 Identities=6% Similarity=-0.096 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 005808 453 KRRGQARAALGESVEAIQDLSKALEFEPNSAD 484 (676)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 484 (676)
..+-......|+++.|-+.|--++...+-+..
T Consensus 45 ~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR 76 (199)
T PF04090_consen 45 TDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR 76 (199)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcCCCCChH
Confidence 33444445555666666665555555444433
No 449
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=49.25 E-value=56 Score=25.85 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=46.8
Q ss_pred hhhhhhcccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhhCHHHHHHHHH
Q 005808 17 HKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCD 93 (676)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~~g~~~~A~~~~~ 93 (676)
|.|--.|-||+.-.+.|.. +-.-|++..++.+|+|++|...-... +.+....-.|.|-.++|..+++..-..
T Consensus 21 HqEA~tIAdwL~~~~~~~E-~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEE-AVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCchHH-HHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHHHHH
Confidence 4554555566655554421 11128888899999999998876543 344445566779999998887665443
No 450
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=49.19 E-value=82 Score=25.48 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 430 (676)
....+..|...+..||+..|.+.+.++-+..+..+-.+..-+.+...+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 45566777778888888888888888866655555555555666655553
No 451
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.73 E-value=2.2e+02 Score=26.11 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcccHHHHHHHHHHHHHhCC
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT-ARAFQRELEAAISDFTEAIQSNP 446 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~ 446 (676)
...+..+-......|+++.|-++|--++...+-+......+|. ++...+.-....++++......|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 4556666677788999999999999999887777766666665 44444444444456655544433
No 452
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=48.61 E-value=5.3e+02 Score=30.58 Aligned_cols=112 Identities=15% Similarity=0.030 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q 005808 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (676)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 564 (676)
++...|..+...+.+++|.-.|+.+-+.. .--.+|...|+|.+|+....+...-.......-..|+.-+..+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle--------kAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKLE--------KALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccHH--------HHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence 45555666666666666666665543221 1123455556666666555443211111112225666677778
Q ss_pred CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (676)
Q Consensus 565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (676)
+++-+|-++....+.. |. .+ -..+.+...|++|+.....+
T Consensus 1013 ~kh~eAa~il~e~~sd-~~--~a----v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD-PE--EA----VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhcC-HH--HH----HHHHhhHhHHHHHHHHHHhc
Confidence 8888877777665532 21 11 12334445566666655544
No 453
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.29 E-value=12 Score=27.76 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=17.0
Q ss_pred hcCCHHHHHHHHHHHHccc
Q 005808 48 SLRNWSKAIRILDSLLAQS 66 (676)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~~ 66 (676)
..|+|++|+.+|..|++..
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 5799999999999999876
No 454
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.20 E-value=37 Score=25.49 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=11.3
Q ss_pred hcCCHHHHHHHHHHHHc
Q 005808 48 SLRNWSKAIRILDSLLA 64 (676)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~ 64 (676)
..|+|++|+.+|.++|+
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 56677777777776654
No 455
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=46.73 E-value=30 Score=25.83 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHH
Q 005808 117 GRKEEALSVWEKGY 130 (676)
Q Consensus 117 ~~~~~A~~~~~~al 130 (676)
|++++|..+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 66666666666664
No 456
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=46.38 E-value=4.8e+02 Score=29.49 Aligned_cols=217 Identities=11% Similarity=0.055 Sum_probs=135.9
Q ss_pred HHhhccCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------ccHHHHHHHHHH
Q 005808 371 TRISKSKSISVDFRLSRGIAQV---NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-------RELEAAISDFTE 440 (676)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------g~~~~A~~~~~~ 440 (676)
..+....|..+..|+....-.. ..++..++...|++++.. -+.+..|...+...... ++++.....|.+
T Consensus 137 ~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~r 215 (881)
T KOG0128|consen 137 LEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFER 215 (881)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHH
Confidence 3444556666777665554433 347788888999998763 34466666666655443 567778888888
Q ss_pred HHHhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH----HHHHH---HHHHhcCCHHHHHHHH
Q 005808 441 AIQSNPS-------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI----LHERG---IVNFKFKDFNAAVEDL 506 (676)
Q Consensus 441 al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la---~~~~~~~~~~~A~~~~ 506 (676)
++..-.. ....+...-..|...-..++-+.++...+... -+.++ |.... .......+++.|...+
T Consensus 216 al~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l 294 (881)
T KOG0128|consen 216 ALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNL 294 (881)
T ss_pred HHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHH
Confidence 8764322 23455555666666666677888888877665 23221 22222 1123345666666654
Q ss_pred HHHH-------HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 005808 507 SACV-------KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY-QDLANSEKALECLQQVL 578 (676)
Q Consensus 507 ~~al-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~al 578 (676)
.+.+ +..|.-...|..+.......|+.-.-...+++++.-.+.+...|...+... ..++-.+.+...+.+++
T Consensus 295 ~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~ 374 (881)
T KOG0128|consen 295 AKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAV 374 (881)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhh
Confidence 4443 333333445666666777788888888889999988888888888877654 33455556667777788
Q ss_pred hcCcCcHHHHH
Q 005808 579 YIDKRFSKAYH 589 (676)
Q Consensus 579 ~~~~~~~~~~~ 589 (676)
..+|-....|.
T Consensus 375 R~cp~tgdL~~ 385 (881)
T KOG0128|consen 375 RSCPWTGDLWK 385 (881)
T ss_pred cCCchHHHHHH
Confidence 77776555444
No 457
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=46.12 E-value=40 Score=24.51 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=10.6
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHH
Q 005808 74 NRAFCYSQLELHKHVIRDCDKAL 96 (676)
Q Consensus 74 ~ra~~~~~~g~~~~A~~~~~~al 96 (676)
++|.-+-..|+|++|+..|.+++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444455555555444444
No 458
>PRK09687 putative lyase; Provisional
Probab=45.98 E-value=3e+02 Score=26.93 Aligned_cols=221 Identities=12% Similarity=-0.039 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhcCCCCHHHHHHHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES----VEAIQDLSKALEFEPNSADILHERG 490 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la 490 (676)
..+.......+...|. ..+...+.+++ ...++......+.++...|+. .++...+..++..+| ++.+....+
T Consensus 37 ~~vR~~A~~aL~~~~~-~~~~~~l~~ll--~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~-d~~VR~~A~ 112 (280)
T PRK09687 37 SLKRISSIRVLQLRGG-QDVFRLAIELC--SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK-SACVRASAI 112 (280)
T ss_pred HHHHHHHHHHHHhcCc-chHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 4444444555555553 33444444432 223455555556666666653 345555655544444 344443333
Q ss_pred HHHHhcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808 491 IVNFKFKD-----FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (676)
Q Consensus 491 ~~~~~~~~-----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 565 (676)
..+-..+. ...+...+..++. + .+..+....+..+...++ .+++..+..++.. + ++.+...-+..+...+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~-D-~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-~-~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAF-D-KSTNVRFAVAFALSVIND-EAAIPLLINLLKD-P-NGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhh-C-CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-C-CHHHHHHHHHHHhcCC
Confidence 33333221 1223333333222 2 245566655666655554 5677777777753 2 2233333333332222
Q ss_pred -CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808 566 -NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (676)
Q Consensus 566 -~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (676)
....+...+..++. ..+..+...-+..+.+.|+ ..|+..+-+.++... .......++-..|.. +|+..+.+
T Consensus 188 ~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 188 YDNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred CCCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 24466777777663 2345555556666666666 567777777776422 345566666677774 68888888
Q ss_pred HHhhCCCc
Q 005808 645 ALDLELDS 652 (676)
Q Consensus 645 al~~~p~~ 652 (676)
+++.+|+.
T Consensus 260 l~~~~~d~ 267 (280)
T PRK09687 260 LLYKFDDN 267 (280)
T ss_pred HHhhCCCh
Confidence 88777743
No 459
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.98 E-value=64 Score=29.37 Aligned_cols=44 Identities=16% Similarity=0.065 Sum_probs=21.3
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCC
Q 005808 57 RILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100 (676)
Q Consensus 57 ~~y~~ai~~~~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p 100 (676)
+...+.+...|++..|.+.+.++..+|+.++|.....++..+-|
T Consensus 132 ~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33333333445555555555555555555555555555555555
No 460
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.74 E-value=41 Score=25.07 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=8.2
Q ss_pred ccHHHHHHHHHHHHH
Q 005808 429 RELEAAISDFTEAIQ 443 (676)
Q Consensus 429 g~~~~A~~~~~~al~ 443 (676)
|++++|+.+|..+++
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555544
No 461
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=44.97 E-value=7.2 Score=42.11 Aligned_cols=100 Identities=20% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHH--HHhCCC-cHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILK--EDPM-YPEALIGRGTARAFQRELEAAISDFTEA--IQSNPS-AGEA 451 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~~~-~~~~ 451 (676)
+.....++..+..++..|++..|..++.++-. +.|. ........|.+....|+++.|+..+... ..+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 44567788889999999999999999998762 2332 3556677889999999999999998742 111111 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 452 WKRRGQARAALGESVEAIQDLSKALE 477 (676)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~ 477 (676)
+...+.++...|++-+|...+-.+-.
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 55678888888888888776554433
No 462
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=44.47 E-value=35 Score=31.95 Aligned_cols=35 Identities=9% Similarity=-0.091 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH---------HhccHHHHHHHHHHHHhhCCCcHH
Q 005808 620 ECLYLRASCYH---------AIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 620 ~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
..+...|..+. ..++...|..++++|++++|+..-
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 44555666663 456788999999999999998643
No 463
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=43.84 E-value=66 Score=18.81 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 005808 88 VIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (676)
Q Consensus 88 A~~~~~~al~~~p~~~~a~~~~g~~~~~l 116 (676)
.+..+.++|..+|.+..++..+-.+...+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 45678889999999999988876666543
No 464
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=43.70 E-value=2.9e+02 Score=26.87 Aligned_cols=135 Identities=11% Similarity=-0.026 Sum_probs=72.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHcccH----HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808 388 GIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTA---RAFQREL----EAAISDFTEAIQSNPSAGEAWKRRGQA 458 (676)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~---~~~~g~~----~~A~~~~~~al~~~~~~~~~~~~la~~ 458 (676)
...++..++|++=-..+.+......+ ..+..+..+.. .+..... ..-...++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45677888998888888887653322 11111222211 1122111 135566667778889998888888877
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 534 (676)
+....=--.....- +.....-|..... -.+.|...+.+++.++|....+...+..+-...|..+
T Consensus 87 ~~~~Aw~~RG~~~A------~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 87 WVHRAWDIRGSGYA------STVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHccchh------cccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 65431100000000 0011222222221 2356777777777777777777776666666666654
No 465
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=42.77 E-value=3.2e+02 Score=29.71 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=49.9
Q ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (676)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (676)
....+.+....+.-+..........+..+..+-..+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344455555554444444444555566666777777777777777777777766 556666777777777777777666
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.29 E-value=2.8e+02 Score=27.29 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=62.8
Q ss_pred hhhhhhhhhhhhhcccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhhCHHHH
Q 005808 10 RYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHV 88 (676)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~ra~~~~~~g~~~~A 88 (676)
-.++...+....++.++...-..+...-.....+..++..|+|..|+......-+.-.. ....|-+. .-.++.+...-
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~-L~~~L~e~~~~ 179 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRH-LSSQLQETLEL 179 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHH-HhHHHHHHHHH
Confidence 33344444444455555555555555566667778889999999999999886544311 11111111 11122222111
Q ss_pred H-HHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 89 I-RDCDKALQLD--PTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (676)
Q Consensus 89 ~-~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a 129 (676)
+ ...+..+..- --++..|..+-.+|..+|+...+.+-+...
T Consensus 180 i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 180 IEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 1111111111 134457777888888888887777444333
No 467
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=41.42 E-value=70 Score=18.69 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 005808 454 RRGQARAALGESVEAIQDLSKAL 476 (676)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al 476 (676)
.+..++.+.|+++.|..+|+...
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444555555555554443
No 468
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=41.23 E-value=2.7e+02 Score=25.05 Aligned_cols=49 Identities=16% Similarity=0.030 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhh
Q 005808 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDL 648 (676)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 648 (676)
..+.+.|.++--++.+++ ++.+.-++.+.|..- .+-++|..+-.+|.++
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 345555655555555542 244444444444211 1345555555555443
No 469
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=40.86 E-value=46 Score=33.64 Aligned_cols=47 Identities=26% Similarity=0.204 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHhhC
Q 005808 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE------------YREAIKDYDAALDLE 649 (676)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~ 649 (676)
...|++++++|.. .++|+.|..+|.++..+|+ |.+|.+.+.+|-...
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 4568888888765 4567889999999988887 667777777776543
No 470
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.60 E-value=53 Score=24.61 Aligned_cols=26 Identities=15% Similarity=-0.050 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHH
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKALQ 97 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~al~ 97 (676)
+..+|.-.-+.|+|++|+..|..+|+
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444455667777666666664
No 471
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.23 E-value=3.7e+02 Score=26.13 Aligned_cols=97 Identities=12% Similarity=-0.005 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HH---HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHH
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KS---AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEA 553 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 553 (676)
.+++.++|..|.+.++.+.+.+++.+.+...-.. .+ .-..+|.+|..+.-.++.++.....++..-+. ...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 3456666666666666666666665555432111 11 22334555544444455555555555543332 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 554 WGHLTQFYQDLANSEKALECLQQVLY 579 (676)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~al~ 579 (676)
-...|...+...++.+|-..+...+.
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 22334444555566666666555543
No 472
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.67 E-value=1.1e+02 Score=33.88 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808 633 GEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 633 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (676)
..+-.|..-+.++..+.|+...+...++.--+
T Consensus 486 ~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~ 517 (748)
T KOG4151|consen 486 NEYLAAKEKYERAKKIKPGGYEALLRLGQQQF 517 (748)
T ss_pred HHHHhhhhHHhcCccccccHHHHHHHHHHHhc
Confidence 33444555566666666766666555554433
No 473
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=38.48 E-value=3.6e+02 Score=25.71 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhc-----CCCCCHH---HHHHHHHH-HHHhccHHHHHHHHHHHHh
Q 005808 601 HKKAIKDLSSGLG-----IDPSNIE---CLYLRASC-YHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 601 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~ 647 (676)
.+.|...|+.|++ +.|.+|- ..++.+.. |.-+++.++|....++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467777777764 4566662 33344444 4456888888876666654
No 474
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=38.26 E-value=11 Score=40.86 Aligned_cols=57 Identities=18% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005808 451 AWKRRGQARAALGESVEAIQDLSKAL--EFEPN-SADILHERGIVNFKFKDFNAAVEDLS 507 (676)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (676)
....-+..+...|++..|...+.+.- .+.+. ........+.+....|+++.|+..+.
T Consensus 26 ~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 26 LLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 33444555556666666665555443 11221 12233444555555566666655554
No 475
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.21 E-value=1.6e+02 Score=30.18 Aligned_cols=26 Identities=19% Similarity=-0.028 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Q 005808 520 YTYLGLALSSIGEYKKAEEAHLKAIQ 545 (676)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~ 545 (676)
++..|.+.+....|++|+.++-.+-+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe 191 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADE 191 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45566777777788888877765543
No 476
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=38.21 E-value=4.1e+02 Score=26.29 Aligned_cols=204 Identities=12% Similarity=0.011 Sum_probs=0.0
Q ss_pred hhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcccHHH
Q 005808 358 TSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEA 433 (676)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~ 433 (676)
..++.....-..++.--...|...+.++..|...+..|+|..|-.++-..... ++++..++++.-..-....+|+.
T Consensus 106 ~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~ 185 (432)
T KOG2758|consen 106 RSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDG 185 (432)
T ss_pred HhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHcCCHHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHhc
Q 005808 434 AISDFTEAIQSNPSA-------------GEAWKRRGQARAALGESVEAIQDLS----KALEFEPNSADILHERGIVNFKF 496 (676)
Q Consensus 434 A~~~~~~al~~~~~~-------------~~~~~~la~~~~~~g~~~~A~~~~~----~al~~~p~~~~~~~~la~~~~~~ 496 (676)
|++.+.+.-+.-... .-.+..+-..+..-+--+.-++.|- -.-.+....|..+..++.+-.-.
T Consensus 186 A~edL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtn 265 (432)
T KOG2758|consen 186 ALEDLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTN 265 (432)
T ss_pred HHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcc
Q ss_pred -CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q 005808 497 -KDFNAAVEDLSACVKL-DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561 (676)
Q Consensus 497 -~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 561 (676)
.+...+++.+-++++. .-...+.....-.|++-.-+++.|...++++-+.-.++......+....
T Consensus 266 k~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~ 332 (432)
T KOG2758|consen 266 KRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFL 332 (432)
T ss_pred hHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHH
No 477
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.06 E-value=61 Score=19.53 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHcccCChhHHHHH
Q 005808 51 NWSKAIRILDSLLAQSYEIQDICNR 75 (676)
Q Consensus 51 ~y~~Ai~~y~~ai~~~~~~~~~~~r 75 (676)
.++.|-..|++.+...|++..+..-
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHH
Confidence 5677888888888777776665544
No 478
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=38.03 E-value=77 Score=23.01 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 105 AYILKGCAFSALGRKEEALSVWEKGYE 131 (676)
Q Consensus 105 a~~~~g~~~~~l~~~~~A~~~~~~al~ 131 (676)
.+...|.-.-..|++++|+..|..|++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566667778999999999999954
No 479
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=37.72 E-value=1.6e+02 Score=25.67 Aligned_cols=61 Identities=15% Similarity=-0.078 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-ccc------CChhH--HHHHHHHHHHhhCHHHHHHHHHHHHH
Q 005808 37 ITARIELAKLCSLRNWSKAIRILDSLL-AQS------YEIQD--ICNRAFCYSQLELHKHVIRDCDKALQ 97 (676)
Q Consensus 37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai-~~~------~~~~~--~~~ra~~~~~~g~~~~A~~~~~~al~ 97 (676)
...+...++.++.|+...|+....-+- ++. |-..+ ..++|..++..|+|.+|...+..|+.
T Consensus 76 ~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 76 KAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 334466778899999999999999762 221 32222 57999999999999999999888874
No 480
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=37.30 E-value=74 Score=23.67 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=10.9
Q ss_pred hcCCHHHHHHHHHHHHc
Q 005808 48 SLRNWSKAIRILDSLLA 64 (676)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~ 64 (676)
..|+|++|+.+|.++++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45666666666666654
No 481
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=37.20 E-value=60 Score=24.39 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHH
Q 005808 74 NRAFCYSQLELHKHVIRDCDKAL 96 (676)
Q Consensus 74 ~ra~~~~~~g~~~~A~~~~~~al 96 (676)
.+|.-.-..|+|++|+..|..+|
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444455555544444443
No 482
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.99 E-value=6.4e+02 Score=28.22 Aligned_cols=278 Identities=15% Similarity=0.034 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcccHHHHHHHHHHHHHh---CCCc--HHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-IGRGTARAFQRELEAAISDFTEAIQS---NPSA--GEAWKR 454 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~---~~~~--~~~~~~ 454 (676)
-.+++.+|.++...|+- ..+++...++...+....+ ..+|.-+..+|--. .+.|++.-.. +..- ..+-+.
T Consensus 397 GGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~--~eiYe~lKevLy~D~AvsGEAAgi~ 472 (929)
T KOG2062|consen 397 GGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN--EEIYEKLKEVLYNDSAVSGEAAGIA 472 (929)
T ss_pred cchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhccccc--HHHHHHHHHHHhccchhhhhHHHHh
Confidence 34666666666555543 6677776666554332211 12222222333211 2233333222 1111 112233
Q ss_pred HHHHHHHcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 005808 455 RGQARAALGESVEAIQ-DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSS 529 (676)
Q Consensus 455 la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~ 529 (676)
+|.+.....+ .+|++ .+.-+.+..-....--...|..+...|+-++|-.+.++++.-. ++ ...+.++..|..
T Consensus 473 MGl~mlGt~~-~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~G 549 (929)
T KOG2062|consen 473 MGLLMLGTAN-QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDK--DPILRYGGMYTLALAYVG 549 (929)
T ss_pred hhhHhhCcCc-HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhc
Confidence 4444333333 23333 3322222221122222345666777778888888888776532 22 234567777777
Q ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH--HHHHHHHHHHHHcCCHHHHHHH
Q 005808 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRGLLLHGLGQHKKAIKD 607 (676)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~ 607 (676)
.|+..--...+.-++....++..-.-.+|.-+.-..+++.......-..+....+. .+-..+|.++...|. .+|+..
T Consensus 550 Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~l 628 (929)
T KOG2062|consen 550 TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINL 628 (929)
T ss_pred cCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHH
Confidence 87766555555444443333333322333333334566666555554443322122 234567777777776 578998
Q ss_pred HHHhhcCCCCCH---HHHHHHHHHHHHhcc-----HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808 608 LSSGLGIDPSNI---ECLYLRASCYHAIGE-----YREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD 669 (676)
Q Consensus 608 ~~~al~~~p~~~---~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 669 (676)
++-... +|.+. .++..+|.+..+..+ ...-++.|.+.+. ..+.+....++-++.|-+++
T Consensus 629 Lepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~--dKhEd~~aK~GAilAqGild 695 (929)
T KOG2062|consen 629 LEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIN--DKHEDGMAKFGAILAQGILD 695 (929)
T ss_pred Hhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhh--hhhhHHHHHHHHHHHhhhhh
Confidence 888777 66542 567778888777654 4455566666554 44556666777777666654
No 483
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=36.57 E-value=4.1e+02 Score=25.86 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Q 005808 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (676)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 568 (676)
.+.|...+.+++.++|....++..+..+-...|..+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 467888888899999988888877777766666654
No 484
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=36.11 E-value=1.1e+02 Score=22.57 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.4
Q ss_pred hcCCHHHHHHHHHHHHcc
Q 005808 48 SLRNWSKAIRILDSLLAQ 65 (676)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~ 65 (676)
..|+|++|+.+|..+++.
T Consensus 18 ~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 18 EDGNYEEALELYKEALDY 35 (75)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 458889998888888764
No 485
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=35.93 E-value=5e+02 Score=26.64 Aligned_cols=54 Identities=13% Similarity=-0.106 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH--HHHHHHcccHHHHHHHHHH
Q 005808 489 RGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYL--GLALSSIGEYKKAEEAHLK 542 (676)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~l--a~~~~~~g~~~~A~~~~~~ 542 (676)
.+..++..++|..|...|..+....+.. ...+..+ |..++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4556778888888888888888765322 1223333 3444556777888888775
No 486
>PRK12798 chemotaxis protein; Reviewed
Probab=35.60 E-value=5.2e+02 Score=26.74 Aligned_cols=220 Identities=13% Similarity=0.013 Sum_probs=137.9
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHH-HHHHhcCC
Q 005808 422 GTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNSADILHERG-IVNFKFKD 498 (676)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la-~~~~~~~~ 498 (676)
+.+|...|--...+ +..+..++. +.+.-..-|..-+-.|+..++.+.+...-.. .|...-.+..+. -......+
T Consensus 87 a~iy~lSGGnP~vl---r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 87 ALIYLLSGGNPATL---RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred HHhhHhcCCCHHHH---HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 34454444433333 333444433 4555556677777789988888887654322 122222333333 33445668
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---HHHHHHHHHHHcCCHHHHHH
Q 005808 499 FNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE---AWGHLTQFYQDLANSEKALE 572 (676)
Q Consensus 499 ~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~ 572 (676)
...|+..|..+--..|... .++..-..+..+.|+.++...+-.+.+.....++. .+..++......++-..- .
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~ 242 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-A 242 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-H
Confidence 9999999999988888763 23444445567889999998888888887766643 344444455544433222 3
Q ss_pred HHHHHHhc-Cc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 573 CLQQVLYI-DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 573 ~~~~al~~-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
.+...+.. +| ....+|..++..-.-.|+.+-|...-.+++.+... ...+.+..+....-..++++|...+.++
T Consensus 243 ~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 243 RLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 34455543 44 33568888999999999999999999999877532 2455555565556666777777776654
No 487
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=35.59 E-value=6.6e+02 Score=27.94 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=59.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH---HH---HHHc
Q 005808 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG---QA---RAAL 462 (676)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la---~~---~~~~ 462 (676)
..++-.|+|+.|+.++-+ .+.+..--..+|.++...|-+...-..-...+...+.++.. .+++ .. .+..
T Consensus 266 ~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHHhc
Confidence 456778999999999887 22222222334444444444333333224455554443221 2222 22 2345
Q ss_pred CCHHHHHHHHHHHHhcC-CCCHH-HHHHHHHHHHhcCCHHH--------------HHHHHHHHHHhCCCCH---HHHHHH
Q 005808 463 GESVEAIQDLSKALEFE-PNSAD-ILHERGIVNFKFKDFNA--------------AVEDLSACVKLDKENK---SAYTYL 523 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~-p~~~~-~~~~la~~~~~~~~~~~--------------A~~~~~~al~~~~~~~---~~~~~l 523 (676)
.+..+|+++|--+-... |.... .+..+..+....++++. .++-..+.+....... .+....
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence 67888888876544332 22222 22333333333333322 2222222222332222 334445
Q ss_pred HHHHHHcccHHHHHHHHHHHH
Q 005808 524 GLALSSIGEYKKAEEAHLKAI 544 (676)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al 544 (676)
|.-....|++++|+..|.-+-
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 666667777777777776543
No 488
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=35.52 E-value=43 Score=21.65 Aligned_cols=25 Identities=32% Similarity=0.297 Sum_probs=18.2
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHcc
Q 005808 41 IELAKLCSLR-NWSKAIRILDSLLAQ 65 (676)
Q Consensus 41 ~~~~~~~~~~-~y~~Ai~~y~~ai~~ 65 (676)
++.|+++..| +.++|..+|.+.|--
T Consensus 8 MEiAkLMSLGLsid~A~~yYe~Gi~Y 33 (46)
T PF09145_consen 8 MEIAKLMSLGLSIDKANDYYERGILY 33 (46)
T ss_dssp HHHHHHHHH---SHHHHHHHHHH-SS
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchH
Confidence 6788888877 889999999987643
No 489
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=34.77 E-value=6.3e+02 Score=27.47 Aligned_cols=157 Identities=15% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--cHHHHHHHHHH
Q 005808 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EYKKAEEAHLK 542 (676)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~ 542 (676)
|..|.++++.++.-+|.- ++...|+.++|+..+++... +....-.....+.++...+ ....-..+|+.
T Consensus 300 yk~a~KYLR~al~s~p~v---------lLl~~~~l~eal~~~e~~c~-~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~ 369 (547)
T PF14929_consen 300 YKYAVKYLRLALQSNPPV---------LLLIGGRLKEALNELEKFCI-SSTCALPIRLRAHLLEYFDQNNSSVLSSCLED 369 (547)
T ss_pred HHHHHHHHHHHhcCCCCe---------EEeccccHHHHHHHHHHhcc-CCCccchHHHHHHHHHHhCcccHHHHHHHHHH
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcC-------
Q 005808 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LGQHKKAIKDLSSGLGI------- 614 (676)
Q Consensus 543 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~------- 614 (676)
+...+|........+...+...-...+-++...--+... ....+|...+.++.+ .++++.-.+....+++.
T Consensus 370 ~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf 448 (547)
T PF14929_consen 370 CLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLV-PSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDF 448 (547)
T ss_pred HhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccc
Q ss_pred --CCCCHHHHHHHHHHHHHh
Q 005808 615 --DPSNIECLYLRASCYHAI 632 (676)
Q Consensus 615 --~p~~~~~~~~la~~~~~~ 632 (676)
...+..+|..++...-+.
T Consensus 449 ~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 449 AGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred cccccccHHHHHHHHHhhHh
No 490
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=34.53 E-value=8.6e+02 Score=28.98 Aligned_cols=135 Identities=16% Similarity=0.013 Sum_probs=63.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (676)
-..+++|+.|+.++..+= +.. +-..-..-.+.|-|.+|+.++.--.+. ...++...|.-+...+.+++|.-
T Consensus 890 D~~L~ry~~AL~hLs~~~---~~~---~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 890 DDYLKRYEDALSHLSECG---ETY---FPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred HHHHHHHHHHHHHHHHcC---ccc---cHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHH
Confidence 334566666666665432 111 111111122344455555444321111 12234444555555555555555
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH---HHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY---HLRGLLLHGLGQHKKAIKDLSSGLG 613 (676)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~ 613 (676)
.|+.+=++ -.--.+|...|++.+|+....+. .+.-.... ..++.-+...+++-+|-+.....+.
T Consensus 961 ~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 961 MYERCGKL--------EKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHhccH--------HHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 55443221 01122344456666666555443 22222222 5666677777888888777777665
No 491
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.54 E-value=8.9e+02 Score=28.84 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILK 409 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 409 (676)
+...+.+|.+|...|...+|+.+|.++..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhh
Confidence 33445555555555555555555555543
No 492
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.98 E-value=4.4e+02 Score=26.09 Aligned_cols=89 Identities=12% Similarity=-0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHHhccHHHHHHHHHHH--HhhCCCcHHH
Q 005808 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-------ECLYLRASCYHAIGEYREAIKDYDAA--LDLELDSMEK 655 (676)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~~~~~ 655 (676)
......+|.+|.+.++|..|-..+.-.-....... ..+..+|.+|.+.++..+|..+..++ +..+..|...
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Q ss_pred HHHHHHHHHHhhhhhhcc
Q 005808 656 FVLQCLAFYQVLFDMEYY 673 (676)
Q Consensus 656 ~~~~~~~~~~~~~~~~~y 673 (676)
....-.+|.+.+-...+|
T Consensus 183 qie~kvc~ARvlD~krkF 200 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKF 200 (399)
T ss_pred HHHHHHHHHHHHHHHHHH
No 493
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=32.91 E-value=1.6e+02 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 555 GHLTQFYQDLANSEKALECLQQVLY 579 (676)
Q Consensus 555 ~~la~~~~~~~~~~~A~~~~~~al~ 579 (676)
..+|....+.+++-.++-.|++++.
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls 29 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALS 29 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555543
No 494
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=32.43 E-value=5.1e+02 Score=25.66 Aligned_cols=147 Identities=14% Similarity=0.062 Sum_probs=91.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH----HHhCCCcHHHHHHHHHHHHHcCC---
Q 005808 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA----IQSNPSAGEAWKRRGQARAALGE--- 464 (676)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~~~~~~~~~~la~~~~~~g~--- 464 (676)
+.++++.+.++.+++.+...|-..+.++..+.++...|. +.+...+... +..-|.-. .+.+..|-
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~-------~L~F~DGtPFa 181 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLL-------ELKFSDGTPFA 181 (301)
T ss_pred HhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChh-------hcccCCCCCCC
Confidence 367888999999999999999999999999999999994 4544444333 23334221 11111111
Q ss_pred HHHHHHHHHHHHhc-----------CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 005808 465 SVEAIQDLSKALEF-----------EP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALS 528 (676)
Q Consensus 465 ~~~A~~~~~~al~~-----------~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~ 528 (676)
-++...++...... .+ .+......-+......+..+.|+..++..+...+.. ......++.++.
T Consensus 182 d~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~ 261 (301)
T TIGR03362 182 DDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLE 261 (301)
T ss_pred CHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHH
Confidence 11222222211100 01 112223344677788899999999999765543332 234556788999
Q ss_pred HcccHHHHHHHHHHHHhc
Q 005808 529 SIGEYKKAEEAHLKAIQL 546 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~ 546 (676)
..|.++-|...|....+.
T Consensus 262 ~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 262 QAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999887765
No 495
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=32.34 E-value=5.1e+02 Score=25.65 Aligned_cols=158 Identities=15% Similarity=0.049 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH----HhcCcccHHHHHHH
Q 005808 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA----IQLDRNFLEAWGHL 557 (676)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~~l 557 (676)
..+....+-..+ ..+++.+.++.+++.+..+|--.+.++..+.++.++|. +.+....... +...|.-....
T Consensus 99 ~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~--- 173 (301)
T TIGR03362 99 PADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELK--- 173 (301)
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhcc---
Confidence 345554544444 66788999999999999988888889999999999994 5554444433 33334321111
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHh-----------cCc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC---C
Q 005808 558 TQFYQDLAN---SEKALECLQQVLY-----------IDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---N 618 (676)
Q Consensus 558 a~~~~~~~~---~~~A~~~~~~al~-----------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 618 (676)
+.-|- -++...++..... ..+ .+......-+..+...+..+.|+..++..+...++ .
T Consensus 174 ----F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~r 249 (301)
T TIGR03362 174 ----FSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRER 249 (301)
T ss_pred ----cCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHH
Confidence 11111 0111112211100 001 11222334467788899999999999987654333 2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 619 IECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
....+.++.++...|.++-|...|+...+.
T Consensus 250 f~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 250 FHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345567899999999999999999988764
No 496
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=32.01 E-value=2.9e+02 Score=22.96 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=16.4
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Q 005808 521 TYLGLALSSIGEYKKAEEAHLKAIQL 546 (676)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~ 546 (676)
..+|....+.+++-.++-.|++++.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 44566666666666666666666654
No 497
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=31.94 E-value=2.6e+02 Score=30.42 Aligned_cols=69 Identities=7% Similarity=-0.010 Sum_probs=56.2
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (676)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (676)
.+.........+....+..|..+-.-+..++|-.+|++.+..+|+ ..++..+.-+...|-...|...+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 30 LIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344445566677788888899999999999999999999998887 677788888888888888887776
No 498
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=31.57 E-value=1.1e+02 Score=18.07 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=16.0
Q ss_pred HHHHHHhcC-----CHHHHHHHHHHHHcc
Q 005808 42 ELAKLCSLR-----NWSKAIRILDSLLAQ 65 (676)
Q Consensus 42 ~~~~~~~~~-----~y~~Ai~~y~~ai~~ 65 (676)
.++.+|..| |+.+|+.+|++|.+.
T Consensus 6 ~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 6 NLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 455555443 778888888887654
No 499
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=30.99 E-value=3.5e+02 Score=24.58 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH--HcCCHHHHHHHHHHHHhhccCChHHH
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS--ALGRKEEALSVWEKGYEHALHQSADL 140 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~--~l~~~~~A~~~~~~al~~~~~~~~~~ 140 (676)
+.-|..+.+ ..+-..|+..|..||..+|-++.-.+..-..|. ...+---.+..|+-....+|....-.
T Consensus 101 H~qRV~a~L-nerkr~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~~A~~~ 170 (193)
T PF12925_consen 101 HQQRVQAML-NERKRAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPEEAAQI 170 (193)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHh
Confidence 455543333 235567888999999988887764443333333 23444567788888888777665443
No 500
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.84 E-value=94 Score=23.49 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808 103 LQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (676)
Q Consensus 103 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~~ 132 (676)
+..++..|..+...|..++|+..|++++..
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Done!