Query 005808
Match_columns 676
No_of_seqs 1007 out of 3848
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 07:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 8.6E-42 2.9E-46 355.2 50.0 379 44-666 7-386 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-38 9.3E-43 328.7 46.8 378 10-634 9-388 (388)
3 2gw1_A Mitochondrial precursor 100.0 2E-38 6.9E-43 342.6 43.8 458 41-664 11-494 (514)
4 2xpi_A Anaphase-promoting comp 100.0 1.7E-36 5.8E-41 334.2 53.5 287 378-664 302-595 (597)
5 3fp2_A TPR repeat-containing p 100.0 1.1E-36 3.6E-41 331.2 40.1 438 40-658 29-501 (537)
6 2xpi_A Anaphase-promoting comp 100.0 1.5E-34 5.1E-39 318.6 43.6 282 385-667 276-564 (597)
7 2y4t_A DNAJ homolog subfamily 100.0 1.8E-33 6.2E-38 298.5 41.9 271 382-652 95-414 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 4.5E-33 1.5E-37 295.4 43.0 364 43-638 33-444 (450)
9 3ieg_A DNAJ homolog subfamily 100.0 5.8E-32 2E-36 277.2 45.3 261 382-664 72-351 (359)
10 2gw1_A Mitochondrial precursor 100.0 2.8E-33 9.4E-38 302.4 37.1 253 414-667 185-463 (514)
11 3ieg_A DNAJ homolog subfamily 100.0 1.7E-31 5.8E-36 273.8 45.0 288 380-667 2-320 (359)
12 3fp2_A TPR repeat-containing p 100.0 1.4E-32 4.9E-37 298.6 37.2 240 427-667 214-476 (537)
13 4g1t_A Interferon-induced prot 100.0 1.7E-31 5.9E-36 285.1 38.4 265 396-660 153-471 (472)
14 3hym_B Cell division cycle pro 100.0 7.1E-32 2.4E-36 273.3 33.5 297 373-669 14-320 (330)
15 4g1t_A Interferon-induced prot 100.0 1.6E-29 5.5E-34 269.8 36.8 365 46-627 61-472 (472)
16 3hym_B Cell division cycle pro 100.0 3.8E-29 1.3E-33 253.2 34.6 247 389-635 64-321 (330)
17 4eqf_A PEX5-related protein; a 100.0 4.3E-29 1.5E-33 256.9 26.0 269 379-647 63-355 (365)
18 1fch_A Peroxisomal targeting s 100.0 6.6E-29 2.3E-33 255.7 27.0 277 390-667 34-344 (368)
19 1fch_A Peroxisomal targeting s 100.0 1E-28 3.5E-33 254.4 28.0 267 381-648 64-359 (368)
20 3cv0_A Peroxisome targeting si 100.0 7E-29 2.4E-33 250.8 25.7 273 380-652 20-319 (327)
21 2h6f_A Protein farnesyltransfe 100.0 1E-28 3.4E-33 252.1 26.1 261 374-664 90-364 (382)
22 2xm6_A Protein corresponding t 100.0 2.3E-25 7.9E-30 238.5 50.5 267 381-661 147-448 (490)
23 2h6f_A Protein farnesyltransfe 100.0 5.6E-28 1.9E-32 246.6 26.9 234 364-598 114-366 (382)
24 4eqf_A PEX5-related protein; a 100.0 5.2E-28 1.8E-32 248.9 25.0 265 402-666 48-340 (365)
25 2ooe_A Cleavage stimulation fa 99.9 6.8E-24 2.3E-28 229.4 45.3 222 432-653 255-497 (530)
26 3cv0_A Peroxisome targeting si 99.9 1.2E-25 4.1E-30 227.0 29.5 253 415-667 21-300 (327)
27 3uq3_A Heat shock protein STI1 99.9 1.3E-25 4.5E-30 218.3 28.7 239 415-662 5-256 (258)
28 2xm6_A Protein corresponding t 99.9 4.9E-23 1.7E-27 220.4 50.0 269 381-665 111-411 (490)
29 3u4t_A TPR repeat-containing p 99.9 3.5E-26 1.2E-30 224.6 23.4 247 381-628 3-264 (272)
30 3u4t_A TPR repeat-containing p 99.9 4E-26 1.4E-30 224.2 23.3 249 414-663 2-265 (272)
31 3uq3_A Heat shock protein STI1 99.9 1.2E-25 4.2E-30 218.6 25.6 240 380-628 4-256 (258)
32 3mkr_A Coatomer subunit epsilo 99.9 2.6E-25 9E-30 219.6 26.6 261 388-656 6-272 (291)
33 2pl2_A Hypothetical conserved 99.9 1.4E-25 4.7E-30 211.9 23.5 200 446-646 2-212 (217)
34 2pl2_A Hypothetical conserved 99.9 2.3E-25 7.9E-30 210.3 23.8 199 378-577 2-211 (217)
35 2ooe_A Cleavage stimulation fa 99.9 4.5E-23 1.5E-27 223.0 43.1 276 378-654 118-460 (530)
36 3sf4_A G-protein-signaling mod 99.9 5.4E-25 1.9E-29 229.5 25.6 290 378-667 6-361 (406)
37 4a1s_A PINS, partner of inscut 99.9 1.1E-24 3.8E-29 227.8 21.5 277 379-655 46-379 (411)
38 3ro2_A PINS homolog, G-protein 99.9 1.6E-24 5.4E-29 219.4 21.5 272 381-652 5-336 (338)
39 3mkr_A Coatomer subunit epsilo 99.9 6.1E-23 2.1E-27 202.6 30.6 250 381-642 34-288 (291)
40 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.9E-23 6.7E-28 205.2 23.4 247 391-642 15-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.9 7E-23 2.4E-27 215.8 28.6 256 380-651 140-424 (452)
42 2q7f_A YRRB protein; TPR, prot 99.9 2.3E-23 8E-28 200.5 22.9 221 379-599 21-241 (243)
43 3sf4_A G-protein-signaling mod 99.9 1.9E-23 6.4E-28 217.8 23.7 199 381-579 87-335 (406)
44 2q7f_A YRRB protein; TPR, prot 99.9 2.8E-23 9.6E-28 199.9 22.2 215 415-629 23-237 (243)
45 1ouv_A Conserved hypothetical 99.9 5.7E-22 1.9E-26 194.6 32.0 234 411-656 2-259 (273)
46 2ho1_A Type 4 fimbrial biogene 99.9 2.4E-22 8E-27 194.7 28.0 213 445-657 32-247 (252)
47 2vq2_A PILW, putative fimbrial 99.9 5.2E-22 1.8E-26 188.4 28.6 213 445-657 4-220 (225)
48 3vtx_A MAMA; tetratricopeptide 99.9 1.8E-22 6E-27 185.4 23.4 174 481-654 3-176 (184)
49 1ouv_A Conserved hypothetical 99.9 1.9E-21 6.6E-26 190.8 31.8 234 377-622 2-259 (273)
50 2ho1_A Type 4 fimbrial biogene 99.9 9.4E-22 3.2E-26 190.5 28.1 209 381-589 37-247 (252)
51 2vq2_A PILW, putative fimbrial 99.9 1.8E-21 6.2E-26 184.6 29.5 212 377-588 4-219 (225)
52 3vtx_A MAMA; tetratricopeptide 99.9 8E-22 2.7E-26 181.0 25.3 172 380-551 4-175 (184)
53 4abn_A Tetratricopeptide repea 99.9 2.1E-22 7.3E-27 213.5 23.6 212 431-643 84-316 (474)
54 4abn_A Tetratricopeptide repea 99.9 3.4E-22 1.2E-26 211.8 24.6 216 395-611 82-318 (474)
55 2ond_A Cleavage stimulation fa 99.9 7E-22 2.4E-26 197.5 25.0 250 398-659 33-303 (308)
56 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.4E-22 2.9E-26 193.5 25.1 234 421-656 11-252 (275)
57 3e4b_A ALGK; tetratricopeptide 99.9 1.2E-21 4.1E-26 206.4 25.6 256 381-652 106-391 (452)
58 2ond_A Cleavage stimulation fa 99.9 5.4E-21 1.9E-25 191.0 28.2 223 432-654 33-276 (308)
59 4i17_A Hypothetical protein; T 99.9 2.2E-20 7.6E-25 177.8 29.1 216 413-662 5-223 (228)
60 4i17_A Hypothetical protein; T 99.9 1.3E-20 4.5E-25 179.4 27.0 211 377-594 3-223 (228)
61 4a1s_A PINS, partner of inscut 99.9 7E-22 2.4E-26 206.5 19.5 254 413-666 46-356 (411)
62 3ro2_A PINS homolog, G-protein 99.9 5E-21 1.7E-25 193.5 21.7 252 415-666 5-316 (338)
63 3nf1_A KLC 1, kinesin light ch 99.9 1.5E-21 5.2E-26 195.2 15.6 252 375-651 21-310 (311)
64 3ulq_A Response regulator aspa 99.9 2.4E-20 8.2E-25 192.8 25.1 234 417-651 105-371 (383)
65 4gyw_A UDP-N-acetylglucosamine 99.9 6.2E-21 2.1E-25 209.7 20.0 173 479-651 5-177 (723)
66 1xi4_A Clathrin heavy chain; a 99.9 4.2E-18 1.4E-22 189.8 41.0 258 379-665 1103-1367(1630)
67 3nf1_A KLC 1, kinesin light ch 99.9 3.8E-21 1.3E-25 192.4 15.0 206 376-581 64-308 (311)
68 1xi4_A Clathrin heavy chain; a 99.9 5E-18 1.7E-22 189.2 40.7 260 381-664 1134-1412(1630)
69 4gyw_A UDP-N-acetylglucosamine 99.9 2.8E-20 9.6E-25 204.5 22.1 175 376-550 4-178 (723)
70 3dra_A Protein farnesyltransfe 99.8 6.2E-19 2.1E-23 172.3 28.4 243 390-660 41-300 (306)
71 3dra_A Protein farnesyltransfe 99.8 6E-19 2.1E-23 172.4 27.9 200 466-665 50-270 (306)
72 3ulq_A Response regulator aspa 99.8 5.6E-20 1.9E-24 190.0 20.1 234 381-615 103-369 (383)
73 3qky_A Outer membrane assembly 99.8 2.6E-19 8.9E-24 174.3 23.1 84 554-637 151-250 (261)
74 1qqe_A Vesicular transport pro 99.8 2.3E-19 8E-24 177.5 22.0 244 399-661 3-282 (292)
75 3qky_A Outer membrane assembly 99.8 2.5E-19 8.7E-24 174.4 21.6 213 376-605 10-252 (261)
76 1hz4_A MALT regulatory protein 99.8 2E-18 6.8E-23 177.7 27.2 271 381-651 14-325 (373)
77 2pzi_A Probable serine/threoni 99.8 3.9E-19 1.3E-23 196.8 23.3 188 375-566 388-583 (681)
78 2pzi_A Probable serine/threoni 99.8 4.9E-19 1.7E-23 196.1 20.4 187 444-634 389-583 (681)
79 3q15_A PSP28, response regulat 99.8 1.3E-18 4.5E-23 179.3 22.2 233 417-650 103-367 (378)
80 3urz_A Uncharacterized protein 99.8 1.4E-18 4.9E-23 162.4 20.2 186 449-653 4-191 (208)
81 1qqe_A Vesicular transport pro 99.8 9.3E-19 3.2E-23 173.2 18.8 220 396-629 32-284 (292)
82 3as5_A MAMA; tetratricopeptide 99.8 2.6E-18 9E-23 157.1 19.4 172 483-654 8-179 (186)
83 3urz_A Uncharacterized protein 99.8 3.1E-18 1E-22 160.1 19.6 185 414-617 3-189 (208)
84 3dss_A Geranylgeranyl transfer 99.8 1.3E-16 4.3E-21 156.6 31.8 249 389-661 37-317 (331)
85 3as5_A MAMA; tetratricopeptide 99.8 5.5E-18 1.9E-22 155.0 20.9 170 381-550 8-177 (186)
86 3q15_A PSP28, response regulat 99.8 2.5E-18 8.6E-23 177.2 20.6 233 381-614 101-365 (378)
87 1b89_A Protein (clathrin heavy 99.8 2E-19 6.9E-24 180.8 11.3 244 381-649 122-386 (449)
88 3edt_B KLC 2, kinesin light ch 99.8 1.8E-18 6.2E-23 170.0 17.7 202 448-649 42-282 (283)
89 4ga2_A E3 SUMO-protein ligase 99.8 5E-19 1.7E-23 155.8 11.5 143 522-664 2-145 (150)
90 3dss_A Geranylgeranyl transfer 99.8 1.2E-16 4.1E-21 156.8 29.1 210 433-664 48-281 (331)
91 4ga2_A E3 SUMO-protein ligase 99.8 7.1E-19 2.4E-23 154.8 11.0 143 422-564 4-147 (150)
92 3edt_B KLC 2, kinesin light ch 99.8 2.7E-18 9.3E-23 168.8 15.3 224 392-615 12-282 (283)
93 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.1E-17 1.4E-21 154.6 22.5 205 381-652 4-217 (225)
94 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.8E-17 6.1E-22 157.1 19.9 187 449-668 4-199 (225)
95 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.3E-23 175.0 11.8 206 384-612 97-309 (449)
96 3q7a_A Farnesyltransferase alp 99.8 2E-16 7E-21 155.6 25.9 254 392-660 65-344 (349)
97 1hz4_A MALT regulatory protein 99.7 6.1E-16 2.1E-20 159.0 27.4 251 415-665 14-305 (373)
98 3q7a_A Farnesyltransferase alp 99.7 9.2E-16 3.2E-20 151.0 26.7 168 366-533 73-258 (349)
99 4gco_A Protein STI-1; structur 99.7 4.5E-17 1.5E-21 138.3 15.1 121 542-662 4-124 (126)
100 4e6h_A MRNA 3'-END-processing 99.7 7E-14 2.4E-18 151.8 42.5 225 431-655 325-577 (679)
101 2r5s_A Uncharacterized protein 99.7 4E-17 1.4E-21 148.1 13.2 164 483-647 6-172 (176)
102 2r5s_A Uncharacterized protein 99.7 4E-17 1.4E-21 148.1 12.8 164 380-544 5-171 (176)
103 4gco_A Protein STI-1; structur 99.7 1.7E-16 5.9E-21 134.6 15.7 118 375-492 7-124 (126)
104 3gyz_A Chaperone protein IPGC; 99.7 5.9E-17 2E-21 141.6 12.3 123 531-653 16-138 (151)
105 3qou_A Protein YBBN; thioredox 99.7 3.8E-16 1.3E-20 153.7 18.6 167 480-646 114-282 (287)
106 2ifu_A Gamma-SNAP; membrane fu 99.7 4.7E-16 1.6E-20 154.9 19.0 231 393-650 3-265 (307)
107 3qou_A Protein YBBN; thioredox 99.7 6.8E-16 2.3E-20 152.0 19.0 169 377-545 113-283 (287)
108 2hr2_A Hypothetical protein; a 99.7 2.1E-16 7.2E-21 135.8 12.6 109 37-145 12-144 (159)
109 2vsy_A XCC0866; transferase, g 99.7 4.7E-16 1.6E-20 169.4 18.2 165 462-626 2-169 (568)
110 2ifu_A Gamma-SNAP; membrane fu 99.7 5E-16 1.7E-20 154.7 16.5 203 427-654 3-229 (307)
111 2vsy_A XCC0866; transferase, g 99.7 1.1E-15 3.6E-20 166.5 20.1 165 428-592 2-169 (568)
112 4f3v_A ESX-1 secretion system 99.7 4.3E-16 1.5E-20 148.3 13.3 208 381-591 7-247 (282)
113 4f3v_A ESX-1 secretion system 99.7 4.9E-16 1.7E-20 147.9 12.8 197 461-659 18-247 (282)
114 2c2l_A CHIP, carboxy terminus 99.7 1.2E-15 4E-20 149.7 15.3 197 447-648 2-199 (281)
115 3gyz_A Chaperone protein IPGC; 99.6 6.8E-16 2.3E-20 134.8 11.3 107 442-548 29-135 (151)
116 3rjv_A Putative SEL1 repeat pr 99.6 8.4E-15 2.9E-19 137.0 19.6 174 468-649 5-198 (212)
117 1p5q_A FKBP52, FK506-binding p 99.6 3.6E-17 1.2E-21 164.8 3.3 201 427-648 77-294 (336)
118 3rjv_A Putative SEL1 repeat pr 99.6 2.1E-14 7.3E-19 134.2 21.7 175 433-615 4-198 (212)
119 2c2l_A CHIP, carboxy terminus 99.6 2E-15 6.7E-20 148.1 14.5 197 412-613 1-198 (281)
120 2vgx_A Chaperone SYCD; alterna 99.6 1.7E-15 5.7E-20 132.6 12.2 119 537-655 7-125 (148)
121 4gcn_A Protein STI-1; structur 99.6 4.8E-15 1.6E-19 126.0 14.5 108 35-143 7-122 (127)
122 4e6h_A MRNA 3'-END-processing 99.6 7E-12 2.4E-16 136.1 42.6 223 398-620 326-576 (679)
123 3mv2_B Coatomer subunit epsilo 99.6 6E-14 2E-18 135.3 23.2 255 381-657 14-291 (310)
124 1p5q_A FKBP52, FK506-binding p 99.6 1.2E-16 4.2E-21 160.9 3.5 152 427-578 125-292 (336)
125 3rkv_A Putative peptidylprolyl 99.6 1.2E-14 4.3E-19 129.6 16.2 115 36-150 11-145 (162)
126 2fo7_A Synthetic consensus TPR 99.6 3.1E-14 1.1E-18 122.1 17.9 133 519-651 3-135 (136)
127 2fo7_A Synthetic consensus TPR 99.6 7.5E-14 2.6E-18 119.7 19.3 133 383-515 3-135 (136)
128 2vgx_A Chaperone SYCD; alterna 99.6 3.3E-15 1.1E-19 130.7 10.2 115 403-517 9-123 (148)
129 2xcb_A PCRH, regulatory protei 99.6 7.9E-15 2.7E-19 127.6 12.2 120 538-657 5-124 (142)
130 1dce_A Protein (RAB geranylger 99.6 1.1E-14 3.6E-19 156.4 13.2 205 393-617 40-270 (567)
131 2xcb_A PCRH, regulatory protei 99.6 1.3E-14 4.3E-19 126.3 11.1 114 404-517 7-120 (142)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.6 9.8E-14 3.4E-18 130.0 18.1 131 485-618 8-154 (213)
133 3upv_A Heat shock protein STI1 99.6 7.9E-14 2.7E-18 118.4 15.2 116 548-663 1-122 (126)
134 1dce_A Protein (RAB geranylger 99.6 3.9E-13 1.3E-17 144.2 23.7 168 498-665 44-238 (567)
135 3upv_A Heat shock protein STI1 99.5 1.5E-13 5.2E-18 116.6 15.8 114 380-493 3-122 (126)
136 3sz7_A HSC70 cochaperone (SGT) 99.5 1E-13 3.6E-18 123.8 14.6 118 548-665 8-125 (164)
137 3mv2_B Coatomer subunit epsilo 99.5 7.2E-13 2.5E-17 127.8 20.8 227 381-623 45-291 (310)
138 2fbn_A 70 kDa peptidylprolyl i 99.5 1.7E-14 5.9E-19 133.5 9.1 152 495-646 16-184 (198)
139 1a17_A Serine/threonine protei 99.5 4.9E-13 1.7E-17 119.4 18.3 132 517-648 13-146 (166)
140 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.5E-13 1.6E-17 125.4 18.5 133 381-516 6-154 (213)
141 2e2e_A Formate-dependent nitri 99.5 6.5E-14 2.2E-18 126.9 12.2 126 494-619 21-149 (177)
142 2qfc_A PLCR protein; TPR, HTH, 99.5 4.9E-13 1.7E-17 132.1 19.4 163 487-649 79-267 (293)
143 1a17_A Serine/threonine protei 99.5 6.5E-13 2.2E-17 118.6 18.5 131 381-511 13-145 (166)
144 2e2e_A Formate-dependent nitri 99.5 1.3E-13 4.5E-18 124.9 14.0 130 391-520 20-152 (177)
145 2qfc_A PLCR protein; TPR, HTH, 99.5 1.4E-12 4.7E-17 128.9 21.7 163 417-579 77-265 (293)
146 2fbn_A 70 kDa peptidylprolyl i 99.5 3.8E-14 1.3E-18 131.2 9.3 142 428-569 17-174 (198)
147 2lni_A Stress-induced-phosphop 99.5 9.2E-13 3.2E-17 112.6 16.5 119 447-565 14-132 (133)
148 2lni_A Stress-induced-phosphop 99.5 5.1E-13 1.7E-17 114.2 14.8 123 376-498 11-133 (133)
149 2vyi_A SGTA protein; chaperone 99.5 5.6E-13 1.9E-17 113.5 14.9 121 379-499 10-130 (131)
150 3sz7_A HSC70 cochaperone (SGT) 99.5 4.9E-13 1.7E-17 119.4 14.9 116 377-492 7-122 (164)
151 3u3w_A Transcriptional activat 99.5 7.9E-13 2.7E-17 130.6 17.8 127 523-649 121-267 (293)
152 2vyi_A SGTA protein; chaperone 99.5 6.2E-13 2.1E-17 113.2 14.0 119 414-532 11-129 (131)
153 3u3w_A Transcriptional activat 99.5 2.3E-12 7.9E-17 127.2 19.6 160 455-614 81-266 (293)
154 1hxi_A PEX5, peroxisome target 99.5 5.5E-13 1.9E-17 112.0 12.8 103 552-654 18-120 (121)
155 4gcn_A Protein STI-1; structur 99.4 6E-13 2E-17 112.9 12.3 103 550-652 7-116 (127)
156 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1E-13 3.5E-18 145.7 8.6 161 461-640 246-406 (457)
157 2hr2_A Hypothetical protein; a 99.4 5.5E-13 1.9E-17 114.5 11.4 104 553-656 13-139 (159)
158 1na0_A Designed protein CTPR3; 99.4 6.3E-12 2.2E-16 105.8 17.6 109 383-491 11-119 (125)
159 1na0_A Designed protein CTPR3; 99.4 4.5E-12 1.5E-16 106.8 16.6 113 551-663 9-121 (125)
160 1hxi_A PEX5, peroxisome target 99.4 1.2E-12 4.1E-17 109.9 12.8 103 382-484 18-120 (121)
161 3q49_B STIP1 homology and U bo 99.4 3.1E-12 1E-16 110.2 15.5 101 414-514 8-108 (137)
162 3q49_B STIP1 homology and U bo 99.4 2.2E-12 7.4E-17 111.1 14.3 104 548-651 6-109 (137)
163 1elw_A TPR1-domain of HOP; HOP 99.4 7.5E-12 2.6E-16 104.2 17.2 113 381-493 4-116 (118)
164 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.4E-13 4.9E-18 144.6 8.0 144 394-537 247-405 (457)
165 1elw_A TPR1-domain of HOP; HOP 99.4 4.9E-12 1.7E-16 105.3 15.8 112 551-662 4-115 (118)
166 3rkv_A Putative peptidylprolyl 99.4 2.9E-12 9.9E-17 114.0 14.0 114 519-632 13-145 (162)
167 1zu2_A Mitochondrial import re 99.4 6.9E-13 2.3E-17 113.6 9.3 102 49-151 15-138 (158)
168 3gw4_A Uncharacterized protein 99.4 3.9E-12 1.3E-16 117.8 15.0 159 494-652 3-180 (203)
169 4b4t_Q 26S proteasome regulato 99.4 4.9E-11 1.7E-15 125.0 24.2 200 381-580 4-245 (434)
170 2dba_A Smooth muscle cell asso 99.4 1.1E-11 3.9E-16 108.0 16.2 116 547-662 24-142 (148)
171 2xev_A YBGF; tetratricopeptide 99.4 1.1E-11 3.8E-16 105.4 15.5 112 382-493 3-120 (129)
172 2dba_A Smooth muscle cell asso 99.4 1.4E-11 4.7E-16 107.5 16.1 119 377-495 24-145 (148)
173 3gw4_A Uncharacterized protein 99.4 1E-11 3.5E-16 114.9 15.8 24 555-578 151-174 (203)
174 2if4_A ATFKBP42; FKBP-like, al 99.3 1.1E-12 3.7E-17 132.1 8.3 161 477-654 173-334 (338)
175 3k9i_A BH0479 protein; putativ 99.3 2.9E-12 9.8E-17 107.0 9.5 92 48-139 2-97 (117)
176 2xev_A YBGF; tetratricopeptide 99.3 2.4E-11 8.3E-16 103.2 15.3 111 417-527 4-120 (129)
177 2kck_A TPR repeat; tetratricop 99.3 4.3E-12 1.5E-16 104.6 9.7 106 547-652 2-110 (112)
178 2uy1_A Cleavage stimulation fa 99.3 5.3E-09 1.8E-13 110.3 35.8 205 433-647 197-412 (493)
179 2kck_A TPR repeat; tetratricop 99.3 1.2E-11 4.2E-16 101.8 11.6 102 413-514 4-108 (112)
180 1elr_A TPR2A-domain of HOP; HO 99.3 1.7E-11 5.9E-16 104.1 12.8 97 554-650 7-110 (131)
181 1wao_1 Serine/threonine protei 99.3 4.2E-13 1.4E-17 141.6 3.1 123 521-643 10-134 (477)
182 1wao_1 Serine/threonine protei 99.3 2.4E-13 8.3E-18 143.4 0.9 133 485-617 8-153 (477)
183 1elr_A TPR2A-domain of HOP; HO 99.3 2.2E-11 7.5E-16 103.5 12.9 112 381-493 4-122 (131)
184 1zu2_A Mitochondrial import re 99.3 8.4E-12 2.9E-16 106.9 9.9 107 529-659 14-131 (158)
185 1ihg_A Cyclophilin 40; ppiase 99.3 3.9E-11 1.3E-15 121.9 16.3 141 483-641 223-363 (370)
186 2if4_A ATFKBP42; FKBP-like, al 99.3 4E-12 1.4E-16 127.9 8.6 154 381-551 179-333 (338)
187 4b4t_Q 26S proteasome regulato 99.3 1E-10 3.5E-15 122.4 18.5 200 415-614 4-245 (434)
188 3k9i_A BH0479 protein; putativ 99.3 9.8E-12 3.4E-16 103.7 8.6 93 564-656 3-98 (117)
189 3ro3_A PINS homolog, G-protein 99.3 5.3E-11 1.8E-15 105.3 13.4 133 519-651 11-161 (164)
190 1ihg_A Cyclophilin 40; ppiase 99.3 7.8E-11 2.7E-15 119.7 15.8 140 381-538 223-362 (370)
191 2uy1_A Cleavage stimulation fa 99.2 2.2E-08 7.4E-13 105.7 31.1 276 363-645 30-380 (493)
192 3ro3_A PINS homolog, G-protein 99.2 1.8E-10 6E-15 101.9 12.5 96 519-614 51-158 (164)
193 2kat_A Uncharacterized protein 99.1 2.2E-09 7.7E-14 88.8 13.7 84 53-136 2-86 (115)
194 2l6j_A TPR repeat-containing p 99.0 2E-10 6.7E-15 94.5 5.8 93 551-643 4-102 (111)
195 2l6j_A TPR repeat-containing p 99.0 2.2E-10 7.7E-15 94.1 5.4 93 381-473 4-102 (111)
196 2kat_A Uncharacterized protein 99.0 3.7E-09 1.3E-13 87.5 12.3 81 570-650 4-84 (115)
197 1na3_A Designed protein CTPR2; 99.0 4E-09 1.4E-13 82.9 11.5 78 586-663 10-87 (91)
198 1na3_A Designed protein CTPR2; 99.0 5.8E-09 2E-13 81.9 12.2 83 380-462 8-90 (91)
199 3ma5_A Tetratricopeptide repea 98.9 4E-09 1.4E-13 84.7 9.4 69 67-135 5-73 (100)
200 3ma5_A Tetratricopeptide repea 98.9 4.5E-09 1.5E-13 84.4 7.8 72 581-652 3-74 (100)
201 2kc7_A BFR218_protein; tetratr 98.9 4.9E-09 1.7E-13 84.0 7.6 90 555-652 4-94 (99)
202 1klx_A Cysteine rich protein B 98.8 6.7E-08 2.3E-12 82.7 14.3 111 531-649 9-127 (138)
203 3ly7_A Transcriptional activat 98.8 4.2E-08 1.4E-12 96.2 14.4 164 474-662 185-353 (372)
204 2kc7_A BFR218_protein; tetratr 98.8 6.8E-09 2.3E-13 83.2 7.4 89 385-481 4-93 (99)
205 1klx_A Cysteine rich protein B 98.8 9.1E-08 3.1E-12 81.8 14.1 108 499-614 11-126 (138)
206 3u64_A Protein TP_0956; tetrat 98.8 3E-07 1E-11 86.2 17.9 106 512-617 147-272 (301)
207 3n71_A Histone lysine methyltr 98.8 5.5E-08 1.9E-12 101.6 14.0 121 529-649 321-465 (490)
208 3ly7_A Transcriptional activat 98.8 2.7E-07 9.2E-12 90.5 17.7 147 380-551 195-344 (372)
209 3u64_A Protein TP_0956; tetrat 98.7 5.9E-07 2E-11 84.2 18.1 109 476-584 145-273 (301)
210 3n71_A Histone lysine methyltr 98.7 1.6E-07 5.5E-12 98.1 13.2 120 494-613 320-463 (490)
211 1pc2_A Mitochondria fission pr 98.5 5.3E-07 1.8E-11 76.2 10.9 95 567-661 14-113 (152)
212 3qww_A SET and MYND domain-con 98.5 1.8E-06 6.2E-11 88.6 15.4 93 47-139 309-423 (433)
213 3bee_A Putative YFRE protein; 98.5 5.3E-07 1.8E-11 70.5 8.8 71 581-651 2-75 (93)
214 3bee_A Putative YFRE protein; 98.5 1.1E-06 3.7E-11 68.7 10.3 69 412-480 3-74 (93)
215 3qwp_A SET and MYND domain-con 98.5 1.5E-06 5.1E-11 89.4 13.9 100 41-140 292-413 (429)
216 1pc2_A Mitochondria fission pr 98.4 3.2E-06 1.1E-10 71.4 12.5 85 401-485 18-107 (152)
217 2v5f_A Prolyl 4-hydroxylase su 98.4 3E-06 1E-10 68.1 11.1 75 586-660 6-87 (104)
218 2v5f_A Prolyl 4-hydroxylase su 98.3 5.7E-06 2E-10 66.4 11.7 78 379-456 3-87 (104)
219 4g26_A Pentatricopeptide repea 98.3 0.00014 4.8E-09 76.5 24.4 114 533-647 86-203 (501)
220 4g26_A Pentatricopeptide repea 98.2 0.00019 6.6E-09 75.4 22.4 178 417-595 28-220 (501)
221 3qww_A SET and MYND domain-con 98.1 1.3E-05 4.4E-10 82.3 11.9 85 495-579 310-410 (433)
222 3qwp_A SET and MYND domain-con 98.1 2E-05 6.9E-10 81.0 12.8 85 529-613 299-399 (429)
223 1nzn_A CGI-135 protein, fissio 98.1 4.9E-05 1.7E-09 61.7 11.5 96 567-662 17-117 (126)
224 4h7y_A Dual specificity protei 97.8 0.00037 1.3E-08 57.6 13.0 53 565-617 74-126 (161)
225 1nzn_A CGI-135 protein, fissio 97.8 0.00038 1.3E-08 56.4 12.5 96 533-628 17-117 (126)
226 4h7y_A Dual specificity protei 97.8 0.00065 2.2E-08 56.2 13.4 108 478-586 8-129 (161)
227 3ffl_A Anaphase-promoting comp 97.7 0.00035 1.2E-08 59.2 10.7 88 42-129 26-148 (167)
228 3ffl_A Anaphase-promoting comp 97.6 0.00059 2E-08 57.9 10.5 134 381-527 20-165 (167)
229 3o48_A Mitochondria fission 1 97.4 0.0015 5E-08 53.1 10.4 79 584-662 39-121 (134)
230 1y8m_A FIS1; mitochondria, unk 97.2 0.0054 1.9E-07 50.5 12.3 81 582-662 36-120 (144)
231 3o48_A Mitochondria fission 1 97.1 0.012 4E-07 47.8 12.4 83 376-458 35-121 (134)
232 1y8m_A FIS1; mitochondria, unk 96.9 0.013 4.5E-07 48.2 11.5 80 378-457 36-119 (144)
233 1qsa_A Protein (soluble lytic 96.8 0.36 1.2E-05 51.5 25.5 124 523-647 220-347 (618)
234 3kae_A CDC27, possible protein 96.4 0.35 1.2E-05 40.7 18.2 57 381-442 33-89 (242)
235 3txn_A 26S proteasome regulato 96.4 0.087 3E-06 52.6 16.0 187 449-635 19-236 (394)
236 3txn_A 26S proteasome regulato 96.3 1 3.4E-05 44.9 24.2 229 381-611 19-281 (394)
237 4gns_B Protein CSD3, chitin bi 96.1 0.042 1.4E-06 59.7 12.9 116 495-611 260-397 (754)
238 3mkq_A Coatomer beta'-subunit; 96.1 0.4 1.4E-05 53.7 21.7 100 389-509 607-707 (814)
239 4gns_B Protein CSD3, chitin bi 95.9 0.12 4.2E-06 56.1 15.3 116 461-577 260-397 (754)
240 3mkq_A Coatomer beta'-subunit; 95.5 0.53 1.8E-05 52.7 19.5 99 424-543 608-707 (814)
241 4b4t_P 26S proteasome regulato 95.1 3.4 0.00012 42.2 22.3 184 428-613 29-246 (445)
242 4b4t_P 26S proteasome regulato 95.0 1.9 6.5E-05 44.1 19.9 185 394-580 29-247 (445)
243 3kae_A CDC27, possible protein 94.8 1.6 5.4E-05 36.8 20.0 189 446-651 30-240 (242)
244 2ff4_A Probable regulatory pro 94.7 0.44 1.5E-05 47.9 14.1 100 31-130 109-232 (388)
245 3mkq_B Coatomer subunit alpha; 94.7 0.89 3.1E-05 39.2 13.7 44 460-508 16-59 (177)
246 3mkq_B Coatomer subunit alpha; 94.3 1.3 4.6E-05 38.1 14.0 108 380-508 7-114 (177)
247 2ff4_A Probable regulatory pro 94.1 0.71 2.4E-05 46.4 14.1 115 384-511 118-233 (388)
248 1qsa_A Protein (soluble lytic 93.5 9.1 0.00031 40.8 32.0 185 456-643 221-437 (618)
249 1zbp_A Hypothetical protein VP 93.1 3.4 0.00012 38.2 15.2 61 390-450 6-66 (273)
250 1zbp_A Hypothetical protein VP 93.0 2.9 9.8E-05 38.7 14.5 58 493-550 7-64 (273)
251 3spa_A Mtrpol, DNA-directed RN 92.9 1.9 6.4E-05 48.2 15.4 97 518-614 128-230 (1134)
252 3spa_A Mtrpol, DNA-directed RN 92.6 2.1 7.1E-05 47.9 15.3 99 415-513 127-231 (1134)
253 1ya0_A SMG-7 transcript varian 91.8 0.92 3.2E-05 46.8 11.0 81 381-461 152-232 (497)
254 1ya0_A SMG-7 transcript varian 91.4 1.4 4.7E-05 45.6 11.8 80 518-597 153-232 (497)
255 1wy6_A Hypothetical protein ST 91.4 1.4 4.9E-05 35.7 9.1 102 20-129 46-151 (172)
256 4ady_A RPN2, 26S proteasome re 90.7 6.7 0.00023 43.6 16.8 25 106-130 233-257 (963)
257 4fhn_B Nucleoporin NUP120; pro 90.4 5.1 0.00017 46.6 16.8 142 386-532 817-986 (1139)
258 4b4t_R RPN7, 26S proteasome re 90.3 1.2 4E-05 45.4 10.1 64 380-443 130-196 (429)
259 4b4t_R RPN7, 26S proteasome re 90.3 1.7 5.7E-05 44.3 11.2 101 414-514 130-239 (429)
260 4b4t_S RPN3, 26S proteasome re 89.9 1 3.6E-05 46.1 9.0 62 519-582 233-301 (523)
261 4b4t_S RPN3, 26S proteasome re 89.8 2.2 7.6E-05 43.7 11.4 130 385-516 140-303 (523)
262 4fhn_B Nucleoporin NUP120; pro 89.8 7.8 0.00027 45.0 17.6 119 420-542 817-963 (1139)
263 4ady_A RPN2, 26S proteasome re 89.4 31 0.001 38.5 22.0 245 381-633 413-679 (963)
264 3lpz_A GET4 (YOR164C homolog); 80.2 43 0.0015 32.2 32.2 135 514-666 133-295 (336)
265 3lpz_A GET4 (YOR164C homolog); 75.7 58 0.002 31.3 29.9 134 480-632 133-295 (336)
266 4a5x_A MITD1, MIT domain-conta 68.8 6.5 0.00022 29.2 4.4 31 35-65 15-45 (86)
267 4gq2_M Nucleoporin NUP120; bet 66.5 59 0.002 36.7 13.8 99 557-659 816-938 (950)
268 3ax2_A Mitochondrial import re 65.2 14 0.00049 26.3 5.3 32 41-72 21-53 (73)
269 2crb_A Nuclear receptor bindin 65.0 10 0.00036 28.0 4.6 27 104-130 16-42 (97)
270 4gq2_M Nucleoporin NUP120; bet 64.5 95 0.0032 35.1 15.0 94 523-620 816-933 (950)
271 3lvg_A Clathrin heavy chain 1; 63.9 4.2E-05 1.4E-09 76.2 -31.7 215 379-610 52-287 (624)
272 3lvg_A Clathrin heavy chain 1; 58.1 0.00023 8E-09 71.0 -27.7 193 413-630 52-274 (624)
273 2wpv_A GET4, UPF0363 protein Y 57.5 1.3E+02 0.0045 28.5 27.5 27 481-507 132-158 (312)
274 3ax2_A Mitochondrial import re 55.9 26 0.00088 24.9 5.3 32 106-137 20-51 (73)
275 2crb_A Nuclear receptor bindin 55.4 16 0.00053 27.1 4.2 25 72-96 18-42 (97)
276 2wpv_A GET4, UPF0363 protein Y 54.2 1.5E+02 0.0051 28.1 29.6 28 514-541 131-158 (312)
277 3t5x_A PCI domain-containing p 52.5 26 0.0009 31.0 6.3 34 585-618 14-47 (203)
278 2w2u_A Hypothetical P60 katani 51.9 26 0.00089 25.7 5.1 20 45-64 28-47 (83)
279 2rpa_A Katanin P60 ATPase-cont 50.1 16 0.00055 26.4 3.5 28 37-64 12-40 (78)
280 3t5v_B Nuclear mRNA export pro 49.1 30 0.001 35.0 6.7 59 556-614 181-249 (455)
281 2ijq_A Hypothetical protein; s 48.1 1.1E+02 0.0037 25.7 8.9 63 381-443 32-103 (161)
282 2vkj_A TM1634; membrane protei 47.4 71 0.0024 23.4 6.4 29 42-70 59-87 (106)
283 1om2_A Protein (mitochondrial 47.1 31 0.001 26.0 4.8 36 37-72 20-56 (95)
284 2p58_C Putative type III secre 46.6 34 0.0011 26.0 4.8 48 41-92 45-92 (116)
285 2v6y_A AAA family ATPase, P60 46.3 28 0.00096 25.5 4.5 17 48-64 23-39 (83)
286 2ijq_A Hypothetical protein; s 45.5 1.3E+02 0.0045 25.2 9.0 60 588-647 35-103 (161)
287 3t5x_A PCI domain-containing p 45.1 46 0.0016 29.4 6.7 41 103-143 14-54 (203)
288 4a5x_A MITD1, MIT domain-conta 44.8 23 0.0008 26.2 3.9 35 98-132 9-45 (86)
289 2yru_A Steroid receptor RNA ac 41.8 32 0.0011 27.2 4.5 52 13-64 38-89 (118)
290 2uwj_G Type III export protein 40.4 33 0.0011 26.0 4.0 48 41-92 44-91 (115)
291 2rpa_A Katanin P60 ATPase-cont 38.8 29 0.00098 25.1 3.4 27 72-98 15-41 (78)
292 1wy6_A Hypothetical protein ST 38.7 1.6E+02 0.0055 24.1 14.2 57 593-649 99-155 (172)
293 3t5v_B Nuclear mRNA export pro 37.6 1E+02 0.0035 31.2 8.5 63 74-136 181-254 (455)
294 2cfu_A SDSA1; SDS-hydrolase, l 37.3 66 0.0023 34.5 7.6 49 72-120 452-500 (658)
295 2w2u_A Hypothetical P60 katani 37.1 48 0.0016 24.3 4.5 17 80-96 30-46 (83)
296 2qx5_A Nucleoporin NIC96; mRNA 35.2 4.4E+02 0.015 28.1 15.2 77 387-475 300-382 (661)
297 3esl_A Checkpoint serine/threo 34.4 2.4E+02 0.0081 24.7 14.8 64 551-615 80-145 (202)
298 2v6y_A AAA family ATPase, P60 34.1 49 0.0017 24.2 4.2 12 54-65 10-21 (83)
299 1om2_A Protein (mitochondrial 33.6 64 0.0022 24.3 4.7 31 624-654 25-55 (95)
300 4gq4_A Menin; tumor suppressor 31.3 34 0.0012 33.5 3.5 42 54-95 282-329 (489)
301 3ph0_C ASCG; type III secretio 31.0 26 0.00088 23.2 1.8 39 17-56 22-60 (61)
302 2v6x_A Vacuolar protein sortin 30.9 61 0.0021 23.7 4.3 18 48-65 25-42 (85)
303 2qx5_A Nucleoporin NIC96; mRNA 30.6 5.2E+02 0.018 27.5 14.1 77 420-509 299-382 (661)
304 1wfd_A Hypothetical protein 15 30.4 66 0.0022 24.1 4.4 17 48-64 27-43 (93)
305 2cwy_A Hypothetical protein TT 29.7 1.3E+02 0.0045 22.5 6.0 27 386-412 6-32 (94)
306 3dza_A Uncharacterized putativ 29.7 1E+02 0.0035 26.6 5.9 68 30-97 100-178 (191)
307 2cfu_A SDSA1; SDS-hydrolase, l 29.6 96 0.0033 33.2 7.3 50 381-430 449-498 (658)
308 1pgy_A SWA2P; UBA, ubiquitin, 27.0 47 0.0016 20.6 2.3 24 41-64 9-33 (47)
309 3myv_A SUSD superfamily protei 26.7 1.1E+02 0.0038 30.9 6.9 46 85-130 164-217 (454)
310 2cpt_A SKD1 protein, vacuolar 26.4 68 0.0023 25.3 4.0 19 86-104 42-60 (117)
311 2vkj_A TM1634; membrane protei 25.8 1.5E+02 0.0052 21.7 5.2 34 380-413 52-85 (106)
312 1wfd_A Hypothetical protein 15 25.6 81 0.0028 23.6 4.2 14 53-66 13-26 (93)
313 3kez_A Putative sugar binding 24.3 1.2E+02 0.004 30.8 6.6 46 85-130 170-223 (461)
314 3re2_A Predicted protein; meni 23.8 93 0.0032 29.9 4.9 31 100-130 293-323 (472)
315 3esl_A Checkpoint serine/threo 22.5 3.9E+02 0.013 23.3 15.7 66 586-652 81-148 (202)
316 2v6x_A Vacuolar protein sortin 21.6 1.2E+02 0.0042 22.0 4.5 18 80-97 24-41 (85)
317 3mcx_A SUSD superfamily protei 21.5 1.3E+02 0.0046 30.5 6.4 46 85-130 176-229 (477)
318 3u84_A Menin; MLL, JUND, ledgf 21.3 1.1E+02 0.0037 30.0 4.9 31 100-130 315-345 (550)
319 4aez_C MAD3, mitotic spindle c 21.0 4.4E+02 0.015 23.4 12.2 40 615-654 146-185 (223)
320 2cpt_A SKD1 protein, vacuolar 20.7 1.1E+02 0.0037 24.1 4.2 18 80-97 29-46 (117)
321 4aez_C MAD3, mitotic spindle c 20.6 4.5E+02 0.015 23.3 8.7 49 569-617 132-182 (223)
322 4b4t_O 26S proteasome regulato 20.3 6.1E+02 0.021 24.8 11.0 81 490-570 83-188 (393)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.6e-42 Score=355.17 Aligned_cols=379 Identities=18% Similarity=0.186 Sum_probs=361.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 005808 44 AKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA 122 (676)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A 122 (676)
..++..|+|++|+..|.++++.+ .+...+..+|.+++..|++++|+..+++++..+|.++.+++.+|.+|...|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 45789999999999999999999 45566889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCccccCc
Q 005808 123 LSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSS 202 (676)
Q Consensus 123 ~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (676)
+..|++++.++|
T Consensus 87 ~~~~~~al~~~p-------------------------------------------------------------------- 98 (388)
T 1w3b_A 87 IEHYRHALRLKP-------------------------------------------------------------------- 98 (388)
T ss_dssp HHHHHHHHHHCT--------------------------------------------------------------------
T ss_pred HHHHHHHHHcCc--------------------------------------------------------------------
Confidence 999999943322
Q ss_pred CCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCCcc
Q 005808 203 QSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFD 282 (676)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (676)
T Consensus 99 -------------------------------------------------------------------------------- 98 (388)
T 1w3b_A 99 -------------------------------------------------------------------------------- 98 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhhHH
Q 005808 283 ICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA 362 (676)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (676)
T Consensus 99 -------------------------------------------------------------------------------- 98 (388)
T 1w3b_A 99 -------------------------------------------------------------------------------- 98 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (676)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (676)
..+..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 99 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 99 ----------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp ----------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ----------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1255677889999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005808 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (676)
Q Consensus 443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 522 (676)
..+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|++..++..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q 005808 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (676)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (676)
+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|+++
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 005808 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQV 666 (676)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 666 (676)
+|+..|+++++..|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999887653
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.7e-38 Score=328.72 Aligned_cols=378 Identities=18% Similarity=0.213 Sum_probs=344.6
Q ss_pred hhhhhhhhhhhhhcccchhhhhhhhhHHHHHHHHHH-HHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHH
Q 005808 10 RYRLNKTHKTICEIDELVRVDSVMASAITARIELAK-LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKH 87 (676)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~ 87 (676)
.|+.++.++-+.-...+++.+ |........++. ++..|++++|+.+++++++.+ .+...+.++|.++.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 455566665544444444433 322233333344 578999999999999999999 566779999999999999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccc
Q 005808 88 VIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSN 167 (676)
Q Consensus 88 A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 167 (676)
|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------------------------------- 133 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-------------------------------- 133 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT--------------------------------
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------------
Confidence 999999999999999999999999999999999999999999433321
Q ss_pred cCCCccccccccCCCCCCccccccCCCCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCcc
Q 005808 168 SMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKL 247 (676)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (676)
T Consensus 134 -------------------------------------------------------------------------------- 133 (388)
T 1w3b_A 134 -------------------------------------------------------------------------------- 133 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCCCcccccccchhhcccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccc
Q 005808 248 REVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSES 327 (676)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 327 (676)
T Consensus 134 -------------------------------------------------------------------------------- 133 (388)
T 1w3b_A 134 -------------------------------------------------------------------------------- 133 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCchhhhhhhhhhhHhhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 328 YSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI 407 (676)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 407 (676)
....+..+|.++...|++++|+..|+++
T Consensus 134 ----------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 134 ----------------------------------------------------LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp ----------------------------------------------------CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ----------------------------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1445667788999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 005808 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487 (676)
Q Consensus 408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 487 (676)
+..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|+++.++.
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q 005808 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567 (676)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 567 (676)
.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc
Q 005808 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (676)
Q Consensus 568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (676)
++|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988874
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-38 Score=342.65 Aligned_cols=458 Identities=18% Similarity=0.179 Sum_probs=370.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 005808 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (676)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~ 120 (676)
..+..++..|+|++|+.+|+++++.+|++..+.++|.|++++|++++|+..++++++++|+++.+++.+|.+|..+|+++
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcccc
Q 005808 121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS 200 (676)
Q Consensus 121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (676)
+|+..|++++.+.|.........+..................... .
T Consensus 91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~---------------------- 136 (514)
T 2gw1_A 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT------------A---------------------- 136 (514)
T ss_dssp HHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH------------H----------------------
Confidence 999999999999987766554443332222111111100000000 0
Q ss_pred CcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCCCC
Q 005808 201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD 280 (676)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (676)
...+..... .... ......
T Consensus 137 --------------~~~~~~~~~-----~~~~---~~~~~~--------------------------------------- 155 (514)
T 2gw1_A 137 --------------TATPTELST-----QPAK---ERKDKQ--------------------------------------- 155 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------HHhhhhccC-----Chhh---HHHhhc---------------------------------------
Confidence 000000000 0000 000000
Q ss_pred cccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhhhh
Q 005808 281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN 360 (676)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (676)
...+... .+....+.......
T Consensus 156 -------------------------------------------------------~~~~~~~----~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 156 -------------------------------------------------------ENLPSVT----SMASFFGIFKPELT 176 (514)
T ss_dssp --------------------------------------------------------CCCCHH----HHHHHHTTSCCCCC
T ss_pred -------------------------------------------------------cCCchhH----HHHHHHhhcCHHHH
Confidence 0000000 00000000000000
Q ss_pred HHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHH
Q 005808 361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN---EGKYASAISIFDQILK-----E--D-------PMYPEALIGRGT 423 (676)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~-----~--~-------p~~~~~~~~la~ 423 (676)
...-..|.++..++..|.+++. .|++++|+..|++++. . + |.++.++..+|.
T Consensus 177 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 177 -----------FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp -----------CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred -----------HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 0000124558888999999887 8999999999999999 5 4 445678999999
Q ss_pred HHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005808 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503 (676)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 503 (676)
++...|++++|+..|++++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Q 005808 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (676)
Q Consensus 504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 583 (676)
..+++++...|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cHH------HHHHHHHHHHH---cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808 584 FSK------AYHLRGLLLHG---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 584 ~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
++. ++..+|.++.. .|++++|+..|++++...|+++.++..+|.++...|++++|..+|+++++++|+++.
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 754 99999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005808 655 KFVLQCLAFY 664 (676)
Q Consensus 655 ~~~~~~~~~~ 664 (676)
.+..+.....
T Consensus 485 ~~~~~~~~~~ 494 (514)
T 2gw1_A 485 KLQAITFAEA 494 (514)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8776654443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-36 Score=334.17 Aligned_cols=287 Identities=15% Similarity=0.123 Sum_probs=277.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 457 (676)
+.++..++.+|..+...|++++|+.+|+++++.+|.+..++..++.++...|++++|+..+++++...|++..++..+|.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (676)
+|...|++++|+.+|+++++..|.+..+|..++.++...|++++|+..|++++...|++..++..+|.++...|++++|+
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CcCc-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSS 610 (676)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (676)
.+|+++++..|.++.++..+|.++...|++++|+..|+++++. .|+. ..++..+|.++...|++++|+..|++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 5654 78999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (676)
+++..|+++.++..+|.+|...|++++|..+|+++++++|+++.++..++.+|.
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988887653
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.1e-36 Score=331.19 Aligned_cols=438 Identities=17% Similarity=0.144 Sum_probs=334.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 005808 40 RIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (676)
Q Consensus 40 ~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~ 118 (676)
...+..++..|+|++|+.+|+++++.+ .++..+.++|.|++++|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 355566789999999999999999999 5677799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcc
Q 005808 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (676)
Q Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (676)
+++|+..|+ ++.+.|+............-....+.... ...
T Consensus 109 ~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~--------------------------------- 149 (537)
T 3fp2_A 109 FTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVL-----NEN--------------------------------- 149 (537)
T ss_dssp HHHHHHHHH-HHC-----------CHHHHHHHHHHHHHH-----HHH---------------------------------
T ss_pred HHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHH-----HHH---------------------------------
Confidence 999999995 87777765543211111000011110000 000
Q ss_pred ccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCC
Q 005808 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (676)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (676)
+.. .|...... .+....+..+.
T Consensus 150 ------------l~~---~~~~~~~~---~~~~~~~~~~~---------------------------------------- 171 (537)
T 3fp2_A 150 ------------LSK---DEGRGSQV---LPSNTSLASFF---------------------------------------- 171 (537)
T ss_dssp ------------CC----------CC---CCCHHHHHHHH----------------------------------------
T ss_pred ------------HHh---Cccccccc---cchHhHHHHHH----------------------------------------
Confidence 000 00000000 00000000000
Q ss_pred CCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhh
Q 005808 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (676)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (676)
..
T Consensus 172 --------------------------------------------------------------------------~~---- 173 (537)
T 3fp2_A 172 --------------------------------------------------------------------------GI---- 173 (537)
T ss_dssp --------------------------------------------------------------------------HT----
T ss_pred --------------------------------------------------------------------------Hh----
Confidence 00
Q ss_pred hhHHHHhhHHHHHHh---hccCCCcHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHH
Q 005808 359 SNEAKRNKKFCVTRI---SKSKSISVDFRLS--------RGIAQVNEGKYASAISIFDQILKEDPMYPE-------ALIG 420 (676)
Q Consensus 359 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~ 420 (676)
... ...+... ....+........ .+......|++++|+..|+++++.+|+++. ++..
T Consensus 174 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 174 FDS-----HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCY 248 (537)
T ss_dssp SCH-----HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred cCh-----HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHH
Confidence 000 0000000 0000000111111 133334457899999999999999999865 5778
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 005808 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (676)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 500 (676)
+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|+++
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Confidence 888999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (676)
Q Consensus 501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (676)
+|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..|++++..
T Consensus 328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcCcH------HHHHHHHHHHHHc----------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005808 581 DKRFS------KAYHLRGLLLHGL----------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (676)
Q Consensus 581 ~~~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (676)
.|.+. ..+..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 77544 3366778899998 9999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcHHHHHH
Q 005808 645 ALDLELDSMEKFVL 658 (676)
Q Consensus 645 al~~~p~~~~~~~~ 658 (676)
+++++|+..+....
T Consensus 488 al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 488 SAILARTMDEKLQA 501 (537)
T ss_dssp HHHHC--CHHHHHH
T ss_pred HHHhCCCcHHHHHH
Confidence 99999998886443
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-34 Score=318.63 Aligned_cols=282 Identities=14% Similarity=0.089 Sum_probs=268.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 464 (676)
..++..+...|++++|+.+|+++++. |.+..++..+|.++...|++++|+..|++++..+|.+..++..++.++...|+
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence 33466677889999999999999887 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (676)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (676)
+++|+..+++++...|.+..++..+|.+|...|++++|+..|+++++..|.+..+|..++.++...|++++|+..|++++
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCC
Q 005808 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI------DPSN 618 (676)
Q Consensus 545 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 618 (676)
+..|.+..++..++.+|...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++. +|++
T Consensus 435 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 435 RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp HTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred HhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 6664
Q ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 619 -IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 619 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
..++..+|.++...|++++|+..|+++++++|++..+|..++.++....
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999999999999999999887654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.8e-33 Score=298.47 Aligned_cols=271 Identities=19% Similarity=0.235 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCC
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGR------------GTARAFQRELEAAISDFTEAIQSNP 446 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~ 446 (676)
..++.+|.++...|++++|+..|+++++.+|.+. .++..+ |.++...|++++|+..|++++...|
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555566666666666666666666666555 444333 5557777777777777777777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH---
Q 005808 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL--- 523 (676)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l--- 523 (676)
.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 77777777777777778888888888777777777777777778777777888888888887777777777666555
Q ss_pred ---------HHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHH
Q 005808 524 ---------GLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (676)
Q Consensus 524 ---------a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 590 (676)
|.++...|++++|+.+|++++...|.++ ..+..+|.++...|++++|+..+++++...|+++.++..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 8888899999999999999999888874 477888999999999999999999999999998999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH------------HHhc-----cHHHHHHHHHH-HHhhCCCc
Q 005808 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY------------HAIG-----EYREAIKDYDA-ALDLELDS 652 (676)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------------~~~g-----~~~~A~~~~~~-al~~~p~~ 652 (676)
+|.++...|++++|+..|+++++.+|+++.++..++.+. ..+| +.+++.+.|++ +++..|++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998888554 3344 55677888886 88888875
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.5e-33 Score=295.43 Aligned_cols=364 Identities=15% Similarity=0.136 Sum_probs=318.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 005808 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (676)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~ 121 (676)
+..++..|+|++|+.+|+++++.+ .+...+.++|.+++.+|++++|+..++++++++|+++.+++.+|.+|..+|++++
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 345678999999999999999998 5677799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCCccccccCCCCCcc
Q 005808 122 ALSVWEKGYEHALHQS---ADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (676)
Q Consensus 122 A~~~~~~al~~~~~~~---~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (676)
|+..|+++++++|+.+ .....+..+
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------------------------------------------- 140 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKS---------------------------------------------------- 140 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHH----------------------------------------------------
Confidence 9999999976665532 111100000
Q ss_pred ccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCcccccccchhhcccCC
Q 005808 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (676)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (676)
T Consensus 141 -------------------------------------------------------------------------------- 140 (450)
T 2y4t_A 141 -------------------------------------------------------------------------------- 140 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhhhhhhhhhHhhhhh
Q 005808 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (676)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (676)
T Consensus 141 -------------------------------------------------------------------------------- 140 (450)
T 2y4t_A 141 -------------------------------------------------------------------------------- 140 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438 (676)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (676)
.....++.+|..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|
T Consensus 141 --------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 141 --------------------DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp --------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 003345677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHhcCCHHHHHHHH
Q 005808 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER------------GIVNFKFKDFNAAVEDL 506 (676)
Q Consensus 439 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~ 506 (676)
++++..+|.+..++..+|.++...|++++|+..|++++...|++...+..+ |.++...|++++|+..+
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 280 (450)
T 2y4t_A 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 280 (450)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887666 99999999999999999
Q ss_pred HHHHHhCCCCHH----HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808 507 SACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (676)
Q Consensus 507 ~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 582 (676)
++++...|+++. .+..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|
T Consensus 281 ~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 281 ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 999999999854 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-hhcCCCCCH----------HHHHHHHHHHHHhcc
Q 005808 583 RFSKAYHLRGLL------------LHGLG-----QHKKAIKDLSS-GLGIDPSNI----------ECLYLRASCYHAIGE 634 (676)
Q Consensus 583 ~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~~----------~~~~~la~~~~~~g~ 634 (676)
+++.++..++.+ |...| +.+++.+.|++ +++..|++. ..+..++.+|..+++
T Consensus 361 ~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d 440 (450)
T 2y4t_A 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999955 44445 56777888886 787777642 244556666666666
Q ss_pred HHHH
Q 005808 635 YREA 638 (676)
Q Consensus 635 ~~~A 638 (676)
.+++
T Consensus 441 ~~~r 444 (450)
T 2y4t_A 441 PEMR 444 (450)
T ss_dssp GGGC
T ss_pred HHHH
Confidence 5543
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=5.8e-32 Score=277.23 Aligned_cols=261 Identities=20% Similarity=0.207 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCC
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDP---MYPEALIGR------------GTARAFQRELEAAISDFTEAIQSNP 446 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~ 446 (676)
..++.+|.++...|++++|+..|+++++.+| +++.++..+ |.++...|++++|+..+++++...|
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3445556666666666666666666666666 555555554 4555555555555555555555555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (676)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (676)
.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++..++..+..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555554433322111
Q ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH----HHHHHHHHHHHcCCHH
Q 005808 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK----AYHLRGLLLHGLGQHK 602 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~ 602 (676)
. .......+|.++...|++++|+..+++++...|+++. ++..+|.++...|+++
T Consensus 232 ~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 232 K----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp H----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred H----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 0 0112223466666677777777777777766666553 3445677777777777
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 005808 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 664 (676)
+|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..++..+..+..
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777766666555543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=302.35 Aligned_cols=253 Identities=16% Similarity=0.122 Sum_probs=239.9
Q ss_pred CHHHHHHHHHHHHH---cccHHHHHHHHHHHHH-----h--C-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 414 YPEALIGRGTARAF---QRELEAAISDFTEAIQ-----S--N-------PSAGEAWKRRGQARAALGESVEAIQDLSKAL 476 (676)
Q Consensus 414 ~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 476 (676)
++.+++.+|.+++. .|++++|+..|++++. . . |.+..++..+|.++...|++++|+..+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 264 (514)
T 2gw1_A 185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264 (514)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 37788888988887 8999999999999999 5 3 4456789999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Q 005808 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (676)
Q Consensus 477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 556 (676)
...|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..
T Consensus 265 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 2gw1_A 265 ELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343 (514)
T ss_dssp HHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred hhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH------HHHHHHHHHH
Q 005808 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------CLYLRASCYH 630 (676)
Q Consensus 557 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~ 630 (676)
+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|+++. ++..+|.++.
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999888754 9999999999
Q ss_pred H---hccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 631 A---IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 631 ~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
. .|++++|+..|+++++.+|++..++..++.++.+..
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 9 999999999999999999999999999999887654
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.7e-31 Score=273.76 Aligned_cols=288 Identities=22% Similarity=0.220 Sum_probs=274.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 459 (676)
+++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 460 AALGESVEAIQDLSKALEFEP---NSADILHER------------GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (676)
...|++++|+..|++++...| .++.++..+ |.++...|++++|+..+++++...|.++.++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 888888777 78999999999999999999999999999999999
Q ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHH------------HHH
Q 005808 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH------------LRG 592 (676)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~la 592 (676)
.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++..++. .+|
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887654 448
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
.++...|++++|+..++++++..|+++. ++..+|.++...|++++|+..|+++++.+|+++.++..++.++....
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999874 46679999999999999999999999999999999999999987654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.4e-32 Score=298.59 Aligned_cols=240 Identities=14% Similarity=0.095 Sum_probs=223.9
Q ss_pred HcccHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 005808 427 FQRELEAAISDFTEAIQSNPSAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499 (676)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 499 (676)
..|++++|+..|+++++.+|++.. ++..+|.++...|++++|+..|++++...|. +.++..+|.++...|++
T Consensus 214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH
Confidence 346899999999999999999855 5777889999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (676)
Q Consensus 500 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 579 (676)
++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH------HHHHHHHHHHHHh----------ccHHHHHHHHH
Q 005808 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI------ECLYLRASCYHAI----------GEYREAIKDYD 643 (676)
Q Consensus 580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~ 643 (676)
..|.++.++..+|.++...|++++|+..|+++++..|++. ..+..+|.++... |++++|+.+|+
T Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 9999999999999999999999999999999998876654 3467778999999 99999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhh
Q 005808 644 AALDLELDSMEKFVLQCLAFYQVL 667 (676)
Q Consensus 644 ~al~~~p~~~~~~~~~~~~~~~~~ 667 (676)
++++.+|++..++..++.++....
T Consensus 453 ~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 453 KACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987654
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=285.11 Aligned_cols=265 Identities=18% Similarity=0.092 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHH
Q 005808 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEA 468 (676)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A 468 (676)
+|++|+.+|+++++.+|+++.++..+|.++... ++.++|+..++++++++|++..++..+|..+... |++++|
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a 232 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445555555555555555555544444443322 2334445555555555555544444444333322 334445
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------------
Q 005808 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI------------------ 530 (676)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------------------ 530 (676)
+.++++++..+|..+.++..+|.+|...|++++|+..++++++.+|++..++..+|.+|...
T Consensus 233 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~ 312 (472)
T 4g1t_A 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555554444444321
Q ss_pred -ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH---HHHHHHHH-HHHcCCHHHHH
Q 005808 531 -GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK---AYHLRGLL-LHGLGQHKKAI 605 (676)
Q Consensus 531 -g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~g~~~~A~ 605 (676)
+.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|+++++..|.+.. ++..+|.+ +...|++++|+
T Consensus 313 ~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 12344444455555555554444555555555555555555555555544443221 22333322 23344455555
Q ss_pred HHHHH------------------------hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 005808 606 KDLSS------------------------GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC 660 (676)
Q Consensus 606 ~~~~~------------------------al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 660 (676)
..|++ ++..+|+++.++..+|.+|...|++++|+.+|++++++.|.++.+...+|
T Consensus 393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 54444 44556777889999999999999999999999999999999998876654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.1e-32 Score=273.30 Aligned_cols=297 Identities=14% Similarity=0.086 Sum_probs=281.0
Q ss_pred hhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHH
Q 005808 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 452 (676)
.....+.+++.++.+|..++..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..+++++..+|+++.++
T Consensus 14 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 93 (330)
T 3hym_B 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSW 93 (330)
T ss_dssp ------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHH
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005808 453 KRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (676)
Q Consensus 453 ~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 531 (676)
..+|.++...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|++..++..+|.++...|
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------cCcHHHHHHHHHHHHHcCCHH
Q 005808 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID---------KRFSKAYHLRGLLLHGLGQHK 602 (676)
Q Consensus 532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~ 602 (676)
++++|+..++++++..|.++.++..+|.++...|++++|+..+++++... |..+.++..+|.++...|+++
T Consensus 174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999875 666789999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 005808 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQVLFD 669 (676)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 669 (676)
+|+..|+++++..|+++.++..+|.++..+|++++|..+|+++++++|++..++..++.++....-+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999988554433
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=269.83 Aligned_cols=365 Identities=14% Similarity=0.023 Sum_probs=272.2
Q ss_pred HHhcCCHHHHHHHHHHHHccc---------C-ChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------CCChhHHH
Q 005808 46 LCSLRNWSKAIRILDSLLAQS---------Y-EIQDICNRAFCYSQLELHKHVIRDCDKALQLD--------PTLLQAYI 107 (676)
Q Consensus 46 ~~~~~~y~~Ai~~y~~ai~~~---------~-~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~ 107 (676)
++..|+|++|+.+|.+|+++. + ....|.|+|.+|..+|++++|+..+++++++. +..+.++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 467999999999999998862 1 23448999999999999999999999999874 45677899
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhhccccccccccccCCCccccccccCCCCCC
Q 005808 108 LKGCAFSALG--RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKM 185 (676)
Q Consensus 108 ~~g~~~~~l~--~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (676)
.+|.++...| ++++|+.+|++|++++|+.+.....+..+.-.... . ..
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~----~-----~~--------------------- 190 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN----W-----PP--------------------- 190 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH----S-----CC---------------------
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----c-----hH---------------------
Confidence 9998887764 69999999999999999887665433221111000 0 00
Q ss_pred ccccccCCCCCccccCcCCcchhhhcccCCCCCCCCCCCCccCCCCCcCccccccccccCccccccccCCCCCCCCCccc
Q 005808 186 SETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTH 265 (676)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (676)
..
T Consensus 191 ---------------------------------------------------~~--------------------------- 192 (472)
T 4g1t_A 191 ---------------------------------------------------SQ--------------------------- 192 (472)
T ss_dssp ---------------------------------------------------CC---------------------------
T ss_pred ---------------------------------------------------HH---------------------------
Confidence 00
Q ss_pred ccccchhhcccCCCCcccCCCCCcccccccccCcccCCccccccccCCCcCCCCCCCccccccccccccCCCCCCchhhh
Q 005808 266 ASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESR 345 (676)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (676)
T Consensus 193 -------------------------------------------------------------------------------- 192 (472)
T 4g1t_A 193 -------------------------------------------------------------------------------- 192 (472)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHhhhhhhhHHHHhhHHHHHHhhccCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005808 346 SKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGR 421 (676)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l 421 (676)
.....+.+....+|.++..+..+|..+.. .|++++|+.++++++..+|.++.++..+
T Consensus 193 -------------------~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~l 253 (472)
T 4g1t_A 193 -------------------NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA 253 (472)
T ss_dssp -------------------CTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred -------------------HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 00002233344577778888877766654 4678899999999999999999999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhcCCCC
Q 005808 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-------------------GESVEAIQDLSKALEFEPNS 482 (676)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~ 482 (676)
|.++...|++++|+..+.++++.+|++..++..+|.+|... +.+++|+..+++++..+|.+
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 333 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence 99999999999999999999999999999999999988643 34688999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-HHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---AYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 558 (676)
..++..+|.++...|++++|+..|++++...|++.. ++..+|.+ ....|++++|+..|++++++.|++.....
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~--- 410 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK--- 410 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---
Confidence 999999999999999999999999999999887653 35556654 45789999999999999999998755332
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808 559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (676)
Q Consensus 559 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (676)
....+...+++++..+|.++.++..+|.++...|++++|+++|+++++..|.+|.+...+|.
T Consensus 411 -------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 411 -------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp -------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred -------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 23455677888999999999999999999999999999999999999999999988887763
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.8e-29 Score=253.19 Aligned_cols=247 Identities=17% Similarity=0.187 Sum_probs=138.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005808 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (676)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 467 (676)
.++...|++++|+..++++++.+|.++.++..+|.++...| ++++|+..|++++..+|.+..++..+|.++...|++++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence 33344444444444444444444444444444444444444 44444444444444444444444455555555555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Q 005808 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (676)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (676)
|+..+++++...|.+...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 55555555555554444445555555555555555555555555555555555555555555555555555555555543
Q ss_pred ---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808 548 ---------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 548 ---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (676)
|..+.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|+++++.+|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 44456666666666666666666666666666666666667777777777777777777777777777777
Q ss_pred HHHHHHHHHHH-HHhccH
Q 005808 619 IECLYLRASCY-HAIGEY 635 (676)
Q Consensus 619 ~~~~~~la~~~-~~~g~~ 635 (676)
+.++..++.++ ...|+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHTTTTC-
T ss_pred hHHHHHHHHHHHHHhCch
Confidence 77777777666 344443
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=4.3e-29 Score=256.94 Aligned_cols=269 Identities=16% Similarity=0.172 Sum_probs=246.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 458 (676)
.+...++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHH----------HHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHE----------RGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLA 526 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~ 526 (676)
+...|++++|+..|++++...|.+...+.. +|.++...|++++|+..+++++...|. ++.++..+|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999999999876665554 499999999999999999999999999 89999999999
Q ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (676)
+...|++++|+.+++++++..|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 607 DLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 607 ~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
.|+++++..|+ +..+|..++.++..+|+.+.|.....+.+.
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999998876 357899999999999999988877766433
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=6.6e-29 Score=255.72 Aligned_cols=277 Identities=22% Similarity=0.254 Sum_probs=250.0
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 005808 390 AQVNEGKYASAIS-IFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (676)
Q Consensus 390 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 464 (676)
++...|+|++|+. .|++++...|.++ ..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5566789999999 9999998888764 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHH
Q 005808 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----------------YLGLALS 528 (676)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----------------~la~~~~ 528 (676)
+++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999998876654 466666
Q ss_pred HcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (676)
..|++++|+..+++++...|. ++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc-----------HHHHHHHHHHHHHhh
Q 005808 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS-----------MEKFVLQCLAFYQVL 667 (676)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~~~~~~~~~~ 667 (676)
.|+++++..|+++.++..+|.++...|++++|+.+|++++++.|++ ..+|..++.++....
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998 888999998887654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1e-28 Score=254.36 Aligned_cols=267 Identities=19% Similarity=0.228 Sum_probs=255.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
...++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILH----------------ERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTY 522 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 522 (676)
..|++++|+..+++++...|.+...+. .++.++ ..|++++|+..+++++...|. +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 999999999999999999998876654 466666 999999999999999999999 8999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q 005808 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (676)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (676)
+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++...|.++.++..+|.++...|+++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCC-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 603 KAIKDLSSGLGIDPSN-----------IECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 603 ~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
+|+..|++++...|++ ..+|..+|.++..+|++++|..+++++++.
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999999998887 899999999999999999999999887764
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=7e-29 Score=250.84 Aligned_cols=273 Identities=13% Similarity=0.126 Sum_probs=257.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 459 (676)
.+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 460 AALGESVEAIQDLSKALEFEPNSADILHER--------------GI-VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (676)
...|++++|+..+++++...|.+...+..+ +. ++...|++++|+..+++++...|.+..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999999999888777766 66 688999999999999999999999999999999
Q ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHH
Q 005808 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604 (676)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 604 (676)
.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCC------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 605 IKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 605 ~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
+..|++++...|+ ++.++..+|.++..+|++++|...++++++..|+.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999999 78999999999999999999999999988876654
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=1e-28 Score=252.12 Aligned_cols=261 Identities=12% Similarity=0.094 Sum_probs=165.7
Q ss_pred hccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCcHHHH
Q 005808 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTEAIQSNPSAGEAW 452 (676)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 452 (676)
+..+|....++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 456666777777777777777777777777777777777777777777777777775 7777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc
Q 005808 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG 531 (676)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g 531 (676)
..+|.++..+|++++|+..|++++.++|++..+|..+|.++...|++++|+..++++++++|++..+|+.+|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777666 34
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 005808 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG--QHKKAIKDLS 609 (676)
Q Consensus 532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~ 609 (676)
..++|+ .+.++.+|++++.++|++..+|..+|.++...| ++++|+..+.
T Consensus 250 ~~~eA~-----------------------------~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 250 YNDRAV-----------------------------LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp SCSHHH-----------------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred cchHHH-----------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 335552 111134444444444444444444444444444 3445555554
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHhc--------c-HHHHHHHHHHH-HhhCCCcHHHHHHHHHHHH
Q 005808 610 SGLGIDPSNIECLYLRASCYHAIG--------E-YREAIKDYDAA-LDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~ 664 (676)
++ +.+|+++.++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++..+.
T Consensus 301 ~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 301 DL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred Hh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 44 445555555555555555542 1 35555555555 5555555555555544443
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=2.3e-25 Score=238.47 Aligned_cols=267 Identities=13% Similarity=0.002 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHH
Q 005808 381 VDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW 452 (676)
Q Consensus 381 ~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 452 (676)
+..++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+.+|+++.+. .++.++
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 222 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQ 222 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHH
Confidence 4455566666665 66777777777777665 457777777777776 67777777777777664 456677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (676)
Q Consensus 453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (676)
..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|
T Consensus 223 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg 298 (490)
T 2xm6_A 223 LHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLA 298 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 777777776 67777777777777665 356677777777776 67777777777777654 5566777777
Q ss_pred HHHHHc-----ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808 525 LALSSI-----GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---NSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (676)
Q Consensus 525 ~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (676)
.++... +++++|+.+|+++.+. .++.+++.+|.+|...| ++++|+.+|+++.+. .++.+++.+|.+|.
T Consensus 299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 299 HLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALL 374 (490)
T ss_dssp HHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 777776 7777777777777765 34567777777777655 677777777777765 45677777777777
Q ss_pred H----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCCC---cHHHHHHHHH
Q 005808 597 G----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELD---SMEKFVLQCL 661 (676)
Q Consensus 597 ~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~ 661 (676)
. .+++++|+.+|+++++.. ++.+++.+|.+|.. .+++++|..+|+++++.+|+ ++.+...++.
T Consensus 375 ~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 375 QGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 7 677777777777777643 46777777777777 67777777777777777733 5555554443
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=5.6e-28 Score=246.57 Aligned_cols=234 Identities=16% Similarity=0.142 Sum_probs=204.1
Q ss_pred HhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (676)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (676)
......+..++..+|.+..+++.+|.++...|+ +++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++
T Consensus 114 ~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 114 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL 193 (382)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344456677788999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhCCCC
Q 005808 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAA-----VEDLSACVKLDKEN 516 (676)
Q Consensus 443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~al~~~~~~ 516 (676)
.++|++..+|..+|.++...|++++|+.+|++++.++|++..+|..+|.++.. .|.+++| +..+++++.++|++
T Consensus 194 ~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~ 273 (382)
T 2h6f_A 194 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 273 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999 5555777 58888888888888
Q ss_pred HHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhcCcCc
Q 005808 517 KSAYTYLGLALSSIG--EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA--------N-SEKALECLQQV-LYIDKRF 584 (676)
Q Consensus 517 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~-~~~A~~~~~~a-l~~~~~~ 584 (676)
..+|+.++.++...| ++++|+..+.++ +..|+++.++..+|.+|..+| + +++|+.+|+++ ++.+|..
T Consensus 274 ~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 274 ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 888888888888877 578888888777 777888888888888887764 2 47777777777 7777777
Q ss_pred HHHHHHHHHHHHHc
Q 005808 585 SKAYHLRGLLLHGL 598 (676)
Q Consensus 585 ~~~~~~la~~~~~~ 598 (676)
...|..++..+...
T Consensus 353 ~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 353 KEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=5.2e-28 Score=248.86 Aligned_cols=265 Identities=19% Similarity=0.201 Sum_probs=234.8
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 402 SIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (676)
Q Consensus 402 ~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (676)
..+...+...+.+ ...++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444444 455999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHcccHHHHHHHHHHHHhcC
Q 005808 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL----------GLALSSIGEYKKAEEAHLKAIQLD 547 (676)
Q Consensus 478 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~ 547 (676)
.+|.++.++..+|.++...|++++|+..+++++...|++...+..+ |.++...|++++|+.++++++...
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998876655544 999999999999999999999999
Q ss_pred cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 005808 548 RN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (676)
Q Consensus 548 p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (676)
|. ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++..|+++.++..+
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 287 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 99 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCc------------HHHHHHHHHHHHHh
Q 005808 626 ASCYHAIGEYREAIKDYDAALDLELDS------------MEKFVLQCLAFYQV 666 (676)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~~~~~~~~~ 666 (676)
|.++..+|++++|+.+|++++++.|+. ..+|..++.++..+
T Consensus 288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (365)
T 4eqf_A 288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340 (365)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence 999999999999999999999999884 45566676665443
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=6.8e-24 Score=229.40 Aligned_cols=222 Identities=9% Similarity=-0.011 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc
Q 005808 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGESV-------EAIQDLSKALE-FEPNSADILHERGIVNFKF 496 (676)
Q Consensus 432 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 496 (676)
..++..|++++..+|.++.+|..+|.++.. .|+++ +|+..|++++. ..|++..+|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHcCCHHHHHHHH
Q 005808 497 KDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECL 574 (676)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~ 574 (676)
|++++|...|++++...|.++ .+|..++.++...|++++|+..|+++++..|.....+...+.+ +...|++++|..+|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999885 6999999999999999999999999999988877777766665 34689999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
+++++..|+++.+|..++.++...|++++|...|++++...|.++ .+|...+......|+.+.+..+++++++..|
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999999999999999876554 4888888889999999999999999999999
Q ss_pred CcH
Q 005808 651 DSM 653 (676)
Q Consensus 651 ~~~ 653 (676)
++.
T Consensus 495 ~~~ 497 (530)
T 2ooe_A 495 EEY 497 (530)
T ss_dssp HHH
T ss_pred hhc
Confidence 644
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=1.2e-25 Score=227.02 Aligned_cols=253 Identities=17% Similarity=0.215 Sum_probs=238.3
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (676)
...++.+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808 495 KFKDFNAAVEDLSACVKLDKENKSAYTYL--------------GL-ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (676)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 559 (676)
..|++++|+..+++++...|.+...+..+ +. ++...|++++|+..++++++..|.++.++..+|.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 99999999999999999999988777766 66 6889999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHH
Q 005808 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (676)
Q Consensus 560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (676)
++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC------------cHHHHHHHHHHHHHhh
Q 005808 640 KDYDAALDLELD------------SMEKFVLQCLAFYQVL 667 (676)
Q Consensus 640 ~~~~~al~~~p~------------~~~~~~~~~~~~~~~~ 667 (676)
.+|++++++.|+ +...+..++.++....
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 999999999999 7888999988887654
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-25 Score=218.34 Aligned_cols=239 Identities=18% Similarity=0.168 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILH 487 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 487 (676)
+.++..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+++++...|.+ +.++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3445555555555555555555555555555 455555555555555555555555555555554443 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Q 005808 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567 (676)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 567 (676)
.+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 6666666666666666666666666655 35677778888888888888888888888889999999999999
Q ss_pred HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 568 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hC------CCcHHHHHHHHHH
Q 005808 648 LE------LDSMEKFVLQCLA 662 (676)
Q Consensus 648 ~~------p~~~~~~~~~~~~ 662 (676)
++ |++..++..+..+
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHHT
T ss_pred hChhhcCCCchHHHHHHHHHh
Confidence 98 8887776655543
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=4.9e-23 Score=220.35 Aligned_cols=269 Identities=15% Similarity=0.036 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHH
Q 005808 381 VDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW 452 (676)
Q Consensus 381 ~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 452 (676)
+..++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 4566778888888 88999999999999875 579999999999998 88999999999999986 578999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (676)
Q Consensus 453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (676)
..+|.+|.. .+++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.++++++.. .++.+++.+|
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 262 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 999999999 89999999999999886 468899999999997 89999999999999875 6688999999
Q ss_pred HHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q 005808 525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-----ANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (676)
Q Consensus 525 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 595 (676)
.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+++.+. .++.+++.+|.++
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y 338 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIY 338 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 99999 89999999999999875 5788999999999998 9999999999999876 4578999999999
Q ss_pred HHcC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808 596 HGLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 596 ~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (676)
...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++.. ++.++..++.+|++
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence 9877 899999999999987 578999999999999 899999999999999864 68889999998876
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=3.5e-26 Score=224.59 Aligned_cols=247 Identities=16% Similarity=0.150 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRG 456 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la 456 (676)
++.++..|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666666666666666666666666 2222 23355566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Q 005808 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (676)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 536 (676)
.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|......+++++|
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655555555555555555555555555555555555555555555555333333355555
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---cC-----cHHHHHHHHHHHHHcCCHHHHH
Q 005808 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYID---KR-----FSKAYHLRGLLLHGLGQHKKAI 605 (676)
Q Consensus 537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~---~~-----~~~~~~~la~~~~~~g~~~~A~ 605 (676)
+..++++++..|++..++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.++...|++++|+
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555555555555555555 555555555555443 22 1134444444444444444444
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHH
Q 005808 606 KDLSSGLGIDPSNIECLYLRASC 628 (676)
Q Consensus 606 ~~~~~al~~~p~~~~~~~~la~~ 628 (676)
.+|+++++.+|+++.++-.++.+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHhcCccHHHHHHHhhhh
Confidence 44444444444444444444433
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=4e-26 Score=224.18 Aligned_cols=249 Identities=15% Similarity=0.065 Sum_probs=226.8
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHH
Q 005808 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHER 489 (676)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 489 (676)
+++.++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++. .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999 4433 4469999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Q 005808 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (676)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 569 (676)
|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++.+|.++.++..+|......+++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999944455679999
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCC---CC-----CHHHHHHHHHHHHHhccHHHH
Q 005808 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGID---PS-----NIECLYLRASCYHAIGEYREA 638 (676)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A 638 (676)
|+..++++++..|+++.++..+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999 999999999999875 44 236899999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808 639 IKDYDAALDLELDSMEKFVLQCLAF 663 (676)
Q Consensus 639 ~~~~~~al~~~p~~~~~~~~~~~~~ 663 (676)
+.+|+++++++|+++.++-.++...
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhh
Confidence 9999999999999999877665544
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=218.56 Aligned_cols=240 Identities=17% Similarity=0.164 Sum_probs=229.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-------HHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAW 452 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~ 452 (676)
.++.++.+|.+++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+++++...|+. ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 37889999999999999999999999999999 889999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (676)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (676)
..+|.++...|++++|+.+|++++...|. +.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999986 4567778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (676)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (676)
+++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC------CCCHHHHHHHHHH
Q 005808 613 GID------PSNIECLYLRASC 628 (676)
Q Consensus 613 ~~~------p~~~~~~~~la~~ 628 (676)
+.. |++..++..++.+
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhChhhcCCCchHHHHHHHHHh
Confidence 998 8888888877765
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=2.6e-25 Score=219.63 Aligned_cols=261 Identities=13% Similarity=0.018 Sum_probs=233.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808 388 GIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (676)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 466 (676)
.+..+..|+|.+|+..++++...+|++ .++...+++++...|+++.|+..++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 456788999999999999887777776 46778899999999999999988765 25556778888999999999999
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 467 EAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (676)
Q Consensus 467 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (676)
+|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+..++..+|.++..+|++++|+..+++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999875 699999999999999999999999999987 8899999999999999999999999999999
Q ss_pred hcCcccHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808 545 QLDRNFLEAWGHLT--QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (676)
Q Consensus 545 ~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (676)
+.+|++.......+ .++...|++++|+..|+++++..|+++.++..+|.++...|++++|...|++++..+|+++.++
T Consensus 158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99998865444333 3344568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccHHH-HHHHHHHHHhhCCCcHHHH
Q 005808 623 YLRASCYHAIGEYRE-AIKDYDAALDLELDSMEKF 656 (676)
Q Consensus 623 ~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~ 656 (676)
.++|.++...|++.+ +..+++++++++|+++.+.
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999976 5789999999999998864
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=1.4e-25 Score=211.90 Aligned_cols=200 Identities=20% Similarity=0.176 Sum_probs=119.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005808 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (676)
Q Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 525 (676)
|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHc-----------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 005808 526 ALSSI-----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (676)
Q Consensus 526 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 594 (676)
++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 55555 777777777777777777777777777777777777777777777777766 667777777777
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005808 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (676)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (676)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777777777766553
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=2.3e-25 Score=210.34 Aligned_cols=199 Identities=20% Similarity=0.215 Sum_probs=111.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 457 (676)
|.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34456666666666666666667666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808 458 ARAAL-----------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (676)
Q Consensus 458 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (676)
++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 66666 555555555555555555555555555555555555555555555555555 555555555555
Q ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (676)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555554443
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=4.5e-23 Score=222.99 Aligned_cols=276 Identities=13% Similarity=0.045 Sum_probs=220.9
Q ss_pred CCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH-------------HHcccHHH
Q 005808 378 SISVDFRLSRGIAQVN---------EGKYASAISIFDQILKEDPMYP--EALIGRGTAR-------------AFQRELEA 433 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~---------~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~-------------~~~g~~~~ 433 (676)
+.+...|...+..... .|+++.|+.+|+++++ .|... ..|...+... ...+++..
T Consensus 118 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 196 (530)
T 2ooe_A 118 IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMN 196 (530)
T ss_dssp TTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred cccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHH
Confidence 3445555555554443 7899999999999998 56543 2332222211 13467788
Q ss_pred HHHHHHH------HHHh-----CCCc-------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhcCCCCHHHHH
Q 005808 434 AISDFTE------AIQS-----NPSA-------GEAWKRRGQARAAL----GES----VEAIQDLSKALEFEPNSADILH 487 (676)
Q Consensus 434 A~~~~~~------al~~-----~~~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~ 487 (676)
|...+.. .++. .|.. ...|.......... ++. ..++..|++++..+|.++.+|.
T Consensus 197 A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~ 276 (530)
T 2ooe_A 197 ARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWY 276 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8777765 3332 2332 23444443332221 232 4788999999999999999999
Q ss_pred HHHHHHHh-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH-
Q 005808 488 ERGIVNFK-------FKDFN-------AAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL- 551 (676)
Q Consensus 488 ~la~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 551 (676)
.+|..+.. .|+++ +|+..++++++ ..|++..+|..++.++...|++++|...|+++++..|.++
T Consensus 277 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 356 (530)
T 2ooe_A 277 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 356 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH
T ss_pred HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch
Confidence 99999986 79977 99999999997 7999999999999999999999999999999999999885
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL-LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (676)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (676)
.+|..++.++.+.|++++|...|+++++..|.....+...+.+ +...|++++|...|+++++..|+++.+|..++.++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999988877777776666 446999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHhhCCCcHH
Q 005808 631 AIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
..|+.++|...|++++...|.++.
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred hCCCHhhHHHHHHHHHhccCCCHH
Confidence 999999999999999998776544
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.4e-25 Score=229.50 Aligned_cols=290 Identities=18% Similarity=0.170 Sum_probs=253.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCC
Q 005808 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPS 447 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~ 447 (676)
......++.+|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34577889999999999999999999999999999984 67899999999999999999999999876 334
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCC--------------------HHH
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNA 501 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~ 501 (676)
...++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46789999999999999999999999999886543 4589999999999999 999
Q ss_pred HHHHHHHHHHh------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHH
Q 005808 502 AVEDLSACVKL------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEK 569 (676)
Q Consensus 502 A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~ 569 (676)
|+..+.+++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999999876 23335688999999999999999999999999886654 3489999999999999999
Q ss_pred HHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhccHHH
Q 005808 570 ALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYRE 637 (676)
Q Consensus 570 A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 637 (676)
|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999876654 6788999999999999999999999999875443 5789999999999999999
Q ss_pred HHHHHHHHHhhCCC------cHHHHHHHHHHHHHhh
Q 005808 638 AIKDYDAALDLELD------SMEKFVLQCLAFYQVL 667 (676)
Q Consensus 638 A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~ 667 (676)
|+.+|++++++.+. ...++..++.++....
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 99999999998443 3556677777776554
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=1.1e-24 Score=227.83 Aligned_cols=277 Identities=18% Similarity=0.150 Sum_probs=247.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCc
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSA 448 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~ 448 (676)
.....++.+|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3467788999999999999999999999999999986 58899999999999999999999999987 4666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD-----------------FNAAVED 505 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~ 505 (676)
..++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+ +++|+.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999988 45556789999999999999 9999999
Q ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHH
Q 005808 506 LSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDLANSEKALEC 573 (676)
Q Consensus 506 ~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~ 573 (676)
+++++... +....++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99998763 23346889999999999999999999999999877543 3889999999999999999999
Q ss_pred HHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHhccHHHHHHH
Q 005808 574 LQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKD 641 (676)
Q Consensus 574 ~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~ 641 (676)
+++++...+.. ..++..+|.++...|++++|+.++++++...+. ...++..+|.+|..+|++++|..+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999877643 678999999999999999999999999987443 246899999999999999999999
Q ss_pred HHHHHhhCCCcHHH
Q 005808 642 YDAALDLELDSMEK 655 (676)
Q Consensus 642 ~~~al~~~p~~~~~ 655 (676)
|++++++.+.....
T Consensus 366 ~~~al~~~~~~~~~ 379 (411)
T 4a1s_A 366 AEQHLQLAXXXXXX 379 (411)
T ss_dssp HHHHHHHCCHHHHH
T ss_pred HHHHHHHHhhcccc
Confidence 99999998875543
No 38
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=1.6e-24 Score=219.39 Aligned_cols=272 Identities=19% Similarity=0.198 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGE 450 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~ 450 (676)
...++..|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.++++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 5678889999999999999999999999999998 467889999999999999999999999877 344577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 005808 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNAAVE 504 (676)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~ 504 (676)
++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999875533 3488999999999999 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHH
Q 005808 505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALE 572 (676)
Q Consensus 505 ~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~ 572 (676)
.+++++... +....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999988762 3335688899999999999999999999999886543 3488999999999999999999
Q ss_pred HHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHH
Q 005808 573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIK 640 (676)
Q Consensus 573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~ 640 (676)
.+++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 999999876644 6788999999999999999999999998875432 4688999999999999999999
Q ss_pred HHHHHHhhCCCc
Q 005808 641 DYDAALDLELDS 652 (676)
Q Consensus 641 ~~~~al~~~p~~ 652 (676)
++++++++.+..
T Consensus 325 ~~~~a~~~~~~~ 336 (338)
T 3ro2_A 325 FAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.92 E-value=6.1e-23 Score=202.62 Aligned_cols=250 Identities=12% Similarity=0.007 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQA 458 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~la~~ 458 (676)
.+..+.++++++..|+++.|+..++. .+|....++..++..+...|++++|+..+++++.. +|+++.+++.+|.+
T Consensus 34 ~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 34 VERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 45668889999999999999998865 25556778889999999999999999999999876 69999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcccHHHH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG--LALSSIGEYKKA 536 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la--~~~~~~g~~~~A 536 (676)
+...|++++|+..+++ |.++.++..+|.++...|++++|+..+++++..+|++.......+ .++...|++++|
T Consensus 111 ~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA 185 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185 (291)
T ss_dssp HHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHH
Confidence 9999999999999988 889999999999999999999999999999999999875544434 334456899999
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH-HHHHHHHhhcCC
Q 005808 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKDLSSGLGID 615 (676)
Q Consensus 537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~ 615 (676)
+..|+++++..|+++.+++.+|.++...|++++|+..|++++..+|+++.++.++|.++...|++.+ +..+++++++.+
T Consensus 186 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 578999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHH
Q 005808 616 PSNIECLYLRASCYHAIGEYREAIKDY 642 (676)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~~A~~~~ 642 (676)
|+++.+.. +..+.+.|+++..-|
T Consensus 266 P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 266 RSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp TTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred CCChHHHH----HHHHHHHHHHHHHHc
Confidence 99987653 456677777776655
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=1.9e-23 Score=205.18 Aligned_cols=247 Identities=18% Similarity=0.154 Sum_probs=216.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 005808 391 QVNEGKYASAISIFDQILKED----PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (676)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 466 (676)
....|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 344588999999999999874 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Q 005808 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (676)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (676)
+|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|++.......+.+ ...|++++|+..+.+++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998766666544 6679999999999999999
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (676)
Q Consensus 547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (676)
.|.+...+. ++.++...++.++|+..+.+++...|. ++.++..+|.++...|++++|+..|++++..+|++..
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 250 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV-- 250 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH--
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH--
Confidence 888766554 777788889999999999999887664 3688999999999999999999999999999997744
Q ss_pred HHHHHHHHHhccHHHHHHHH
Q 005808 623 YLRASCYHAIGEYREAIKDY 642 (676)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~ 642 (676)
..+.++..+|++++|+..+
T Consensus 251 -~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 -EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHhhHHHH
Confidence 3477889999999999887
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=7e-23 Score=215.77 Aligned_cols=256 Identities=14% Similarity=0.057 Sum_probs=215.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHhCCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCCCcHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAIS----IFDQILKEDPMYPEALIGRGTARAFQR---ELEAAISDFTEAIQSNPSAGEAW 452 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~----~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~ 452 (676)
.+..++.+|.++...+.++++.. +++.+...+ +.+++.+|.++...| ++++|+.+|+++....|.....+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 37788999999999985555444 455444444 449999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005808 453 KRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIV-N--FKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (676)
Q Consensus 453 ~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 525 (676)
+.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++... .++.+++.+|.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~ 291 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK 291 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 9999999765 79999999999998 8899999999998 5 5789999999999999865 58999999999
Q ss_pred HHHHcc-----cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808 526 ALSSIG-----EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (676)
Q Consensus 526 ~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (676)
+|. .| ++++|+.+|+++. +.++.+++.+|.+|.. ..++++|+.+|+++.+ +.++.+.+.+|.+|.
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS 365 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence 998 56 9999999999998 8899999999999987 4499999999999986 456788999999998
Q ss_pred H----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCCC
Q 005808 597 G----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 597 ~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~ 651 (676)
. ..++.+|..+|+++.+..+ +.+...++.+.. ..++..+|....++..+..+.
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 5 5699999999999998765 455556665543 345677888888777665443
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=2.3e-23 Score=200.47 Aligned_cols=221 Identities=22% Similarity=0.211 Sum_probs=160.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 458 (676)
..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (676)
+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888887778888888888888888888
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q 005808 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (676)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (676)
.+++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..++.+....+
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 8888877777777777777777777777777777777777777777777776666554433
No 43
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=217.84 Aligned_cols=199 Identities=20% Similarity=0.235 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccc--------------------HHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRE--------------------LEAA 434 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A 434 (676)
+..+..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 5678889999999999999999999999876543 4588889999999999 8888
Q ss_pred HHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHHH
Q 005808 435 ISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAA 502 (676)
Q Consensus 435 ~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A 502 (676)
+.++.+++.. .|....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888887765 222344566667777777777777777766665543322 2555555555555666666
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHH
Q 005808 503 VEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKA 570 (676)
Q Consensus 503 ~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A 570 (676)
+..+++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55555555544332 3344445555555555555555555544443221 33344444444444444444
Q ss_pred HHHHHHHHh
Q 005808 571 LECLQQVLY 579 (676)
Q Consensus 571 ~~~~~~al~ 579 (676)
+.+++++++
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=2.8e-23 Score=199.91 Aligned_cols=215 Identities=19% Similarity=0.159 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (676)
+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (676)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 574 (676)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005808 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (676)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (676)
++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..++.+.
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 5555555554555555555555555555555555555555555544444444433
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.91 E-value=5.7e-22 Score=194.63 Aligned_cols=234 Identities=17% Similarity=0.157 Sum_probs=176.0
Q ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 005808 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADIL 486 (676)
Q Consensus 411 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 486 (676)
+|.++.+++.+|.++...|++++|+.+|+++++ |++..++..+|.++.. .+++++|+.+|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 355667777777777777777777777777766 5666777777777777 777777777777777664 66777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 005808 487 HERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (676)
Q Consensus 487 ~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 558 (676)
..+|.++.. .+++++|+.++++++.. +++.++..+|.++.. .+++++|+.+|+++++.. ++.++..+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 777777777 77777777777777766 367777777777777 777888888888777764 566777788
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808 559 QFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (676)
Q Consensus 559 ~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (676)
.+|.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++..| +.+++.+|.+|.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 88877 788888888888887663 46778888888888 8888888888888887755 778888888888
Q ss_pred H----hccHHHHHHHHHHHHhhCCCcHHHH
Q 005808 631 A----IGEYREAIKDYDAALDLELDSMEKF 656 (676)
Q Consensus 631 ~----~g~~~~A~~~~~~al~~~p~~~~~~ 656 (676)
. .+++++|+.+|+++++..|++...+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8 8888888888888888888765543
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=2.4e-22 Score=194.74 Aligned_cols=213 Identities=19% Similarity=0.088 Sum_probs=186.0
Q ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005808 445 NPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (676)
Q Consensus 445 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 523 (676)
+|.. +.++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 4444 667788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q 005808 524 GLALSSIGEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (676)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 601 (676)
|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 8888888888888888888888 77888888889999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
++|+..++++++..|++..++..++.++...|++++|..+++++++..|+++....
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999998999999999999999999999999999999999887654
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=5.2e-22 Score=188.39 Aligned_cols=213 Identities=13% Similarity=-0.033 Sum_probs=160.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (676)
Q Consensus 445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (676)
.|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45556666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHc-ccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q 005808 525 LALSSI-GEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (676)
Q Consensus 525 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 601 (676)
.++... |++++|+..++++++ ..|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 777777 777777777777777 55666777777777777778888888888888777777777788888888888888
Q ss_pred HHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 602 KKAIKDLSSGLGIDP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 602 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
++|+..+++++...| .++..+..++.++...|++++|..+++.+.+.+|+++....
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888888888777 77777777777888888888888888888878888777644
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=1.8e-22 Score=185.35 Aligned_cols=174 Identities=25% Similarity=0.320 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 005808 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (676)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 560 (676)
+++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 005808 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640 (676)
Q Consensus 561 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 640 (676)
+...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCcHH
Q 005808 641 DYDAALDLELDSME 654 (676)
Q Consensus 641 ~~~~al~~~p~~~~ 654 (676)
+|+++++++|+++.
T Consensus 163 ~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 163 YFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred HHHHHHhCCccCHH
Confidence 88888888887643
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=1.9e-21 Score=190.83 Aligned_cols=234 Identities=18% Similarity=0.164 Sum_probs=216.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHH
Q 005808 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW 452 (676)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 452 (676)
.|.++..++.+|..+...|++++|+.+|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 456789999999999999999999999999998 7889999999999999 999999999999999885 78999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005808 453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (676)
Q Consensus 453 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (676)
..+|.++.. .+++++|+.+|++++..+ ++.++..+|.+|.. .+++++|+.+++++++.. +..++..+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 999999999 999999999999999874 88999999999999 999999999999999875 688999999
Q ss_pred HHHHH----cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808 525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (676)
Q Consensus 525 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (676)
.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++++..| +.++..+|.++.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 99999 99999999999999987 457899999999999 9999999999999998866 789999999999
Q ss_pred H----cCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808 597 G----LGQHKKAIKDLSSGLGIDPSNIECL 622 (676)
Q Consensus 597 ~----~g~~~~A~~~~~~al~~~p~~~~~~ 622 (676)
. .+++++|+.+|+++++..|++...+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 9999999999999999988755443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=9.4e-22 Score=190.47 Aligned_cols=209 Identities=16% Similarity=0.105 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808 461 ALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (676)
..|++++|+.++++++. ..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988 7777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHH
Q 005808 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589 (676)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 589 (676)
.++++++..|.+...+..++.++...|++++|..+++++++..|+++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888888888888888888888888887776554
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=1.8e-21 Score=184.60 Aligned_cols=212 Identities=17% Similarity=0.108 Sum_probs=127.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (676)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 456 (676)
.|.++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34445566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH
Q 005808 457 QARAAL-GESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533 (676)
Q Consensus 457 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 533 (676)
.++... |++++|+..+++++. ..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 666666 666666666666665 34444555555666666666666666666666655555555555555555555555
Q ss_pred HHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHH
Q 005808 534 KKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588 (676)
Q Consensus 534 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 588 (676)
++|+..+++++...| .+...+..++.++...|+++.|..+++.+....|+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 555555555555555 5555555555555555555555555555555555554443
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=8e-22 Score=180.97 Aligned_cols=172 Identities=22% Similarity=0.288 Sum_probs=125.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 459 (676)
++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Q 005808 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (676)
...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCcccH
Q 005808 540 HLKAIQLDRNFL 551 (676)
Q Consensus 540 ~~~al~~~p~~~ 551 (676)
|+++++.+|+++
T Consensus 164 ~~~al~~~p~~a 175 (184)
T 3vtx_A 164 FKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHTTHHHH
T ss_pred HHHHHhCCccCH
Confidence 777777766653
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=2.1e-22 Score=213.46 Aligned_cols=212 Identities=20% Similarity=0.194 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES-VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (676)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (676)
+++++..+.......|.+..+++.+|.++...|++ ++|+.+|+++++.+|.++.++..+|.+|...|++++|+..|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444444555555555555555 55555555555555555555555555555555555555555555
Q ss_pred HHhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--------CCHHHHHH
Q 005808 510 VKLDKENKSAYTYLGLALSSI---------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKALE 572 (676)
Q Consensus 510 l~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~ 572 (676)
++.+|+ ..++..+|.++... |++++|+..|+++++.+|+++.+|..+|.+|... |++++|+.
T Consensus 164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 555544 34445555555555 5555555555555555555555555555555555 55666666
Q ss_pred HHHHHHhcCc---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808 573 CLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643 (676)
Q Consensus 573 ~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (676)
.|++++..+| .++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++..+|++++|+..+.
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666 5566666666666666666666666666666666666666666666666666666655443
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=3.4e-22 Score=211.84 Aligned_cols=216 Identities=19% Similarity=0.197 Sum_probs=208.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL-EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473 (676)
Q Consensus 395 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (676)
+.+++++..+..+....|.++.+++.+|.++...|++ ++|+..|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4578888899998899999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------ccHHHH
Q 005808 474 KALEFEPNSADILHERGIVNFKF---------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI--------GEYKKA 536 (676)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A 536 (676)
+++..+|+ ..++..+|.++... |++++|+..++++++.+|++..+|..+|.++... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999998 79999999999999 9999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808 537 EEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (676)
Q Consensus 537 ~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (676)
+.+|+++++++| .++.++..+|.+|...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+.
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999876554
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=7e-22 Score=197.52 Aligned_cols=250 Identities=9% Similarity=-0.027 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cccH-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHc
Q 005808 398 ASAISIFDQILKEDPMYPEALIGRGTARAF-------QREL-------EAAISDFTEAIQ-SNPSAGEAWKRRGQARAAL 462 (676)
Q Consensus 398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~ 462 (676)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 688889999999999999999999888764 4664 788888888888 6888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHH
Q 005808 463 GESVEAIQDLSKALEFEPNSAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGEYKKAEEAH 540 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~ 540 (676)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888888887776 788888888888888888888888888888777777666555433 68888888888
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---Cc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (676)
Q Consensus 541 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (676)
+++++..|+++.+|..++.++...|++++|..+|++++.. .| ....+|..++..+...|+++.|..+++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 8888888888888888888888888888888888888874 44 3567788888888888888888888888888887
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (676)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (676)
++...... +.+ ....+.+.++|+++.....+
T Consensus 273 ~~~~~~~~-~~~-----------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 273 EEYEGKET-ALL-----------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp TTTSSCHH-HHH-----------HTTTCBTTBCSSCHHHHHTT
T ss_pred cccccchH-HHH-----------HHHHHhcccCCCCHHHHHhc
Confidence 75432211 111 11125666788887765433
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=8.4e-22 Score=193.45 Aligned_cols=234 Identities=19% Similarity=0.165 Sum_probs=211.4
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 005808 421 RGTARAFQRELEAAISDFTEAIQSN----PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (676)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (676)
++......|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3344456789999999999999974 456789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (676)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 576 (676)
|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++..|++.......+.. ...|++++|+..+.+
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ 169 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776666544 667999999999999
Q ss_pred HHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
++...|.+...+. ++.++...++.++|+..+++++...|.. +.++..+|.++...|++++|+.+|+++++++|++
T Consensus 170 ~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 170 HFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 9999888766554 7778888999999999999999987743 6899999999999999999999999999999987
Q ss_pred HHHH
Q 005808 653 MEKF 656 (676)
Q Consensus 653 ~~~~ 656 (676)
...+
T Consensus 249 ~~~~ 252 (275)
T 1xnf_A 249 FVEH 252 (275)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 6544
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.89 E-value=1.2e-21 Score=206.36 Aligned_cols=256 Identities=11% Similarity=0.007 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcccH----HHHHHHHHHHHHhCCCcHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASA---ISIFDQILKEDPMYPEALIGRGTARAFQREL----EAAISDFTEAIQSNPSAGEAWK 453 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A---~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~~~~~~ 453 (676)
+.+++.+|.+|...+...++ ...+.++.. +.++.+++.+|.++...+.+ +.+..++..+...+|. +++
T Consensus 106 ~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~ 180 (452)
T 3e4b_A 106 GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYV 180 (452)
T ss_dssp SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHH
Confidence 45899999999987765554 444444433 34578999999999998844 4455555555554444 899
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808 454 RRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (676)
Q Consensus 454 ~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (676)
.+|.+|...| ++++|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |+++.+++.+|.+
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999776 79999999999987 8999999999999
Q ss_pred -H--HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH-
Q 005808 527 -L--SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG- 597 (676)
Q Consensus 527 -~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~- 597 (676)
+ ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. +.++.+++.+|.+|..
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRG 331 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC
Confidence 4 5689999999999999865 58999999999998 56 9999999999998 8899999999999987
Q ss_pred ---cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhCCCc
Q 005808 598 ---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 598 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 652 (676)
..++++|+.+|+++.+. .++.+.+.+|.+|.. ..++.+|..+|+++.+..+..
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred CCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 45999999999999874 457889999999985 458999999999999976543
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=5.4e-21 Score=191.03 Aligned_cols=223 Identities=10% Similarity=-0.003 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc
Q 005808 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGES-------VEAIQDLSKALE-FEPNSADILHERGIVNFKF 496 (676)
Q Consensus 432 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 496 (676)
++|+..|++++..+|.++.+|+.+|.++.. .|++ ++|+..|++++. +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCHHHHHHHH
Q 005808 497 KDFNAAVEDLSACVKLDKENKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECL 574 (676)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~ 574 (676)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+.+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999886 999999999999999999999999999999988888777766543 79999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---DP-SNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
+++++..|+++.+|..+|.++...|++++|+..|++++.. .| +...+|..++..+...|++++|...++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999995 55 3788999999999999999999999999999999
Q ss_pred CcHH
Q 005808 651 DSME 654 (676)
Q Consensus 651 ~~~~ 654 (676)
++..
T Consensus 273 ~~~~ 276 (308)
T 2ond_A 273 EEYE 276 (308)
T ss_dssp TTTS
T ss_pred cccc
Confidence 8654
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=2.2e-20 Score=177.81 Aligned_cols=216 Identities=17% Similarity=0.129 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005808 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (676)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (676)
.++.+++.+|.+++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|.++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3455566666666666666666666666666655 555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (676)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 571 (676)
++...|++++|+..++++++..|+++..+..++ .++..+|.++...|++++|+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~~~~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYA---------------------------IYYLKEGQKFQQAGNIEKAE 137 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH---------------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH---------------------------HHHHHHhHHHHHhccHHHHH
Confidence 555555555555555555555555552211111 34555555556666666666
Q ss_pred HHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 572 ECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 572 ~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
..|+++++.+|+ ++.++..+|.++...| ...++++..+.+.+...+ .+......+.+++|+.+|+++++++
T Consensus 138 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 138 ENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 666666666666 5566666666664433 334455555554443322 3334455667777777777777777
Q ss_pred CCcHHHHHHHHHH
Q 005808 650 LDSMEKFVLQCLA 662 (676)
Q Consensus 650 p~~~~~~~~~~~~ 662 (676)
|++..+...++.+
T Consensus 211 p~~~~~~~~l~~i 223 (228)
T 4i17_A 211 PNRTEIKQMQDQV 223 (228)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7777766555444
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=1.3e-20 Score=179.44 Aligned_cols=211 Identities=17% Similarity=0.182 Sum_probs=164.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (676)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 455 (676)
.+.++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 356679999999999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLA 526 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~ 526 (676)
|.++...|++++|+..+++++..+|+++ .++..+|.++...|++++|+..++++++.+|+ +..++..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999999999998 45777777777777777777777777777777 66777777777
Q ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 005808 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 594 (676)
+...|+ ..+.++..+.+.....+ .+......+.+++|+.+++++++.+|+++.+...++.+
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 765443 33455555544443322 22223334445555555555555555555555544444
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=7e-22 Score=206.48 Aligned_cols=254 Identities=20% Similarity=0.154 Sum_probs=223.0
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC
Q 005808 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEF------EPNS 482 (676)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 482 (676)
.....+..+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+.++++++.. .|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3356678899999999999999999999999999986 58899999999999999999999999987 4556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccc-----------------HHHHHHH
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKSAYTYLGLALSSIGE-----------------YKKAEEA 539 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~ 539 (676)
..++..+|.++...|++++|+..+++++.. .+....++..+|.++...|+ +++|+.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 779999999999999999999999999988 45556789999999999999 9999999
Q ss_pred HHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcH------HHHHHHHHHHHHcCCHHHHHHH
Q 005808 540 HLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKD 607 (676)
Q Consensus 540 ~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~ 607 (676)
+++++.+. +....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99998864 33467899999999999999999999999998876433 3889999999999999999999
Q ss_pred HHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHh
Q 005808 608 LSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDS------MEKFVLQCLAFYQV 666 (676)
Q Consensus 608 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~ 666 (676)
|++++...+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..++.++...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 99999876643 6789999999999999999999999999986553 33666677766554
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=5e-21 Score=193.51 Aligned_cols=252 Identities=19% Similarity=0.160 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSAD 484 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 484 (676)
...++..|..+...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.++++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4567888999999999999999999999999998 467889999999999999999999999876 344467
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccc--------------------HHHHHH
Q 005808 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGE--------------------YKKAEE 538 (676)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 538 (676)
++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999875543 3488899999999999 999999
Q ss_pred HHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHH
Q 005808 539 AHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK 606 (676)
Q Consensus 539 ~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~ 606 (676)
++++++.. .+....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999876 33446789999999999999999999999999875532 3489999999999999999999
Q ss_pred HHHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHh
Q 005808 607 DLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAALDLELDS------MEKFVLQCLAFYQV 666 (676)
Q Consensus 607 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~ 666 (676)
++++++...+.. ..++..+|.++...|++++|..++++++++.|.. ..++..++.++...
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 999999876554 6788999999999999999999999999986654 33566666666554
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=195.24 Aligned_cols=252 Identities=14% Similarity=0.082 Sum_probs=153.8
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-
Q 005808 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN- 445 (676)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 445 (676)
...|..+..++.+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 346777888888888888888888888888888874 55556778888888888888888888888887662
Q ss_pred -------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005808 446 -------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (676)
Q Consensus 446 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (676)
|....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345566667777777777777777777666552 2334455555666666666666666666555
Q ss_pred Hh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808 511 KL--------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (676)
Q Consensus 511 ~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 582 (676)
.. .|....++..+|.++...|++++|+.+++++++..|.... + ...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~-------------~~~~ 235 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF------------G-------------SVDD 235 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH------------C-----------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC------------C-------------CCCc
Confidence 54 3333344555555555555555555555555543322100 0 0001
Q ss_pred C------cHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 583 R------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 583 ~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
. ....+...+..+...+.+.+|...+..+....|....++..+|.+|...|++++|+.+|++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 12233444455555666777777888888888888888888888888889999999998888888765
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=2.4e-20 Score=192.79 Aligned_cols=234 Identities=15% Similarity=0.085 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------H
Q 005808 417 ALIGRGTARAFQRELEAAISDFTEAIQS---NPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------A 483 (676)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~ 483 (676)
.++.+|.++...|++++|+.+|++++.. .++ ...++..+|.++...|++++|+.++.+++...+.. .
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3455999999999999999999999987 233 45789999999999999999999999999874432 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHh-----cC-cccH
Q 005808 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LD-RNFL 551 (676)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~ 551 (676)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.+++++++ .+ |...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 588999999999999999999999999875433 25889999999999999999999999999 46 7789
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----cCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHH
Q 005808 552 EAWGHLTQFYQDLANSEKALECLQQVLYID-----KRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
.++..+|.++...|++++|+.++++++... |.....+..+|.++...|+ +.+|+..+++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 999999999999999999999999999874 3333446779999999999 88899988887 44455567899
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 624 LRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
.+|.+|...|++++|..+|++++++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=6.2e-21 Score=209.66 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 005808 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (676)
Q Consensus 479 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 558 (676)
.|++++++.++|.++...|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..++.++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH
Q 005808 559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (676)
Q Consensus 559 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (676)
.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhCCC
Q 005808 639 IKDYDAALDLELD 651 (676)
Q Consensus 639 ~~~~~~al~~~p~ 651 (676)
.+.+++++++.|+
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 5555555555443
No 66
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=4.2e-18 Score=189.77 Aligned_cols=258 Identities=16% Similarity=0.138 Sum_probs=210.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 458 (676)
..+..|+.+|.++...|++++|+..|.++ +++..+..+|.++...|++++|+++|..+.+..++. .+...+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHH
Confidence 44889999999999999999999999875 778999999999999999999999999999877442 223358888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (676)
|.+++++++ ++.|. ..+ +...+..+|..+...|+|++|+.+|.++ ..|..++.++..+|++++|++
T Consensus 1177 YAKl~rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1177 LAKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 988888885 44442 233 4466678999999999999999999985 478889999999999999999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (676)
.++++ .+..+|...+.++...|++..|..+... +..+ ++.+..++..|...|.+++|+.+++.++.+++.+
T Consensus 1243 aarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1243 GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 99988 4568899999999999999999887764 3333 4556688888999999999999999999999888
Q ss_pred HHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHH
Q 005808 619 IECLYLRASCYH--AIGEYREAIKDYDAALDLEL-----DSMEKFVLQCLAFYQ 665 (676)
Q Consensus 619 ~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~ 665 (676)
...+..+|.+|. +.++..++++.|...+.+.| ++...|..+...|.+
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~ 1367 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 1367 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh
Confidence 888877777775 45678888888888888777 666777776666653
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=192.40 Aligned_cols=206 Identities=13% Similarity=0.072 Sum_probs=147.0
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--
Q 005808 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-- 445 (676)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 445 (676)
..+.....+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 46777889999999999999999999999999986 35557889999999999999999999999999874
Q ss_pred ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808 446 ------PSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (676)
Q Consensus 446 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (676)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++.
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555778999999999999999999999999988 566677899999999999999999999999997
Q ss_pred hCCC---------CHHHH------HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 512 LDKE---------NKSAY------TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (676)
Q Consensus 512 ~~~~---------~~~~~------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 576 (676)
..+. ....+ ...+..+...+.+.++...+.++....|....++..+|.+|...|++++|+.++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6432 11111 12222222333333444444444444444445555555555555555555555555
Q ss_pred HHhcC
Q 005808 577 VLYID 581 (676)
Q Consensus 577 al~~~ 581 (676)
++++.
T Consensus 304 al~l~ 308 (311)
T 3nf1_A 304 AMRSR 308 (311)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=5e-18 Score=189.20 Aligned_cols=260 Identities=13% Similarity=0.110 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
+..++..|.++...|+|++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|. ..+ +...+..+|..+.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~-n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCY 1206 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHH
Confidence 455666889999999999999999999987754 3334458999999999885 44442 233 4456668999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (676)
..|+|++|+.+|.++ ..|..++.++.+.|++++|++.++++ .+..+|...+.++...|++..|..+.
T Consensus 1207 ~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred hcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999985 47889999999999999999999988 56789999999999999999999988
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCC--
Q 005808 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDP-- 616 (676)
Q Consensus 541 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-- 616 (676)
.. +..+ +..+..++..|...|.+++|+.+++.++.+++.+...+..+|.++.+ -++..++++.|...+.+.|
T Consensus 1274 l~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A 1274 LH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred Hh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence 74 4334 44555888999999999999999999999999999999888888776 4577888889988888777
Q ss_pred ---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh------------CCCcHHHHHHHHHHHH
Q 005808 617 ---SNIECLYLRASCYHAIGEYREAIKDYDAALDL------------ELDSMEKFVLQCLAFY 664 (676)
Q Consensus 617 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~~~~~~~ 664 (676)
.+...|..+..+|.+-|+++.|+...-..... .+.+++.++....-|.
T Consensus 1350 r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1350 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH
Confidence 67889999999999999999999544443322 5677777665544443
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=2.8e-20 Score=204.50 Aligned_cols=175 Identities=18% Similarity=0.256 Sum_probs=156.3
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (676)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 455 (676)
..|.+++++..+|.++..+|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 535 (676)
|.++..+|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|++..++..+|.++...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccc
Q 005808 536 AEEAHLKAIQLDRNF 550 (676)
Q Consensus 536 A~~~~~~al~~~p~~ 550 (676)
|++.+++++++.|+.
T Consensus 164 A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 164 YDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhH
Confidence 999999888876553
No 70
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.85 E-value=6.2e-19 Score=172.34 Aligned_cols=243 Identities=14% Similarity=0.046 Sum_probs=163.6
Q ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHc
Q 005808 390 AQVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKRRGQAR----AAL 462 (676)
Q Consensus 390 ~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~ 462 (676)
.....|.+ ++|+..+.+++..+|++..+|..++.++...| ++++++..+..++..+|++..+|...+.++ ...
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 33445555 68999999999999999999999999999998 899999999999999999988888888888 666
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808 463 ---GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 463 ---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (676)
+++++++..+.+++..+|.+..+|...+.+....|.++ +++..+.+++..+|.+..+|...+.+....+...
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~--- 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA--- 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC---
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc---
Confidence 67778888888888888888888877777777777777 7777777777777777777777777776666500
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH-HHHHHHHhhcCC-
Q 005808 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKDLSSGLGID- 615 (676)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~- 615 (676)
....++++++++.+++..+|.+..+|..++.++...|+... ...++.+++..+
T Consensus 198 -------------------------~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 198 -------------------------TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred -------------------------hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 00014444445555555555555555555555444444322 223444444433
Q ss_pred --CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hCCCcHHHHHHHH
Q 005808 616 --PSNIECLYLRASCYHAIGEYREAIKDYDAALD-LELDSMEKFVLQC 660 (676)
Q Consensus 616 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~ 660 (676)
|.++.++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 55555555666666555666666666666554 4665555554443
No 71
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.85 E-value=6e-19 Score=172.44 Aligned_cols=200 Identities=12% Similarity=0.026 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---ccHHHH
Q 005808 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLAL----SSI---GEYKKA 536 (676)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~---g~~~~A 536 (676)
++|+..+.+++.++|++..+|...+.++...| ++++++..+..++..+|++..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 35555555555555555555555555555555 666666666666666666666666666665 444 566677
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC------HHHHHHHH
Q 005808 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE--KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ------HKKAIKDL 608 (676)
Q Consensus 537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~ 608 (676)
+..+.++++.+|.+..+|...+.++...|.++ ++++.++++++.+|.+..+|...+.++...+. ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 77777777777777777777777777777766 77788888888888888888888887777776 89999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHhhC---CCcHHHHHHHHHHHHH
Q 005808 609 SSGLGIDPSNIECLYLRASCYHAIGEYRE-AIKDYDAALDLE---LDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~~~~~~~~ 665 (676)
++++..+|++..+|..++.++...|+... ...+..++++++ |.++.++..++.++.+
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 99999999999999999999999998555 556788888776 8899998888888764
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=5.6e-20 Score=190.04 Aligned_cols=234 Identities=14% Similarity=0.135 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-------
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE---DPM---YPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------- 447 (676)
...++.+|..+...|++++|+..|++++.. .++ .+.++..+|.++...|++++|+.++.+++.+.+.
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 345667999999999999999999999986 233 4688999999999999999999999999987443
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hC-CC
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVK-----LD-KE 515 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~-~~ 515 (676)
...++..+|.++...|++++|+.+|++++...+.. ..++..+|.+|...|++++|+.++++++. .+ |.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 24588999999999999999999999999875433 24899999999999999999999999999 45 77
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcCcHHH
Q 005808 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKA 587 (676)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~ 587 (676)
...++..+|.++...|++++|+.++++++... |.....+..+|.++...|+ +.+|+..+++. ...|....+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~ 341 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 78899999999999999999999999999884 3344456789999999999 88888888776 344455678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 005808 588 YHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (676)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (676)
+..+|.++...|++++|..+|+++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998754
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.84 E-value=2.6e-19 Score=174.29 Aligned_cols=84 Identities=13% Similarity=-0.003 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHhhcCCCCCH-
Q 005808 554 WGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLRGLLLHGL----------GQHKKAIKDLSSGLGIDPSNI- 619 (676)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~- 619 (676)
++.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|+++
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 445555555555555555555555555554 334555555555544 555555555555555555553
Q ss_pred --HHHHHHHHHHHHhccHHH
Q 005808 620 --ECLYLRASCYHAIGEYRE 637 (676)
Q Consensus 620 --~~~~~la~~~~~~g~~~~ 637 (676)
.+...++.++..++++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 334444445554444443
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=2.3e-19 Score=177.54 Aligned_cols=244 Identities=13% Similarity=0.032 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--c-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 399 SAISIFDQILKEDPMYPEALIGRGTARAFQ--R-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475 (676)
Q Consensus 399 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (676)
+|..++.++-+.-+.....+ .++.. + ++++|+..|.++ |.++...|++++|+..|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 35566666666555421111 11122 2 477888887776 55677788888888888888
Q ss_pred HhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-ccHHHHHHHHHH
Q 005808 476 LEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSI-GEYKKAEEAHLK 542 (676)
Q Consensus 476 l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~ 542 (676)
+.+.+. ...++..+|.+|...|++++|+.++++++.+.|.. ..++..+|.++... |++++|+.+|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 876421 14578888888888888888888888888876543 45788899999996 999999999999
Q ss_pred HHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH-------HHHHHHHHHHHcCCHHHHHHHHH
Q 005808 543 AIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK-------AYHLRGLLLHGLGQHKKAIKDLS 609 (676)
Q Consensus 543 al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~ 609 (676)
++++.|.. ..++..+|.++..+|++++|+.+|++++...|.+.. ++..+|.++...|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99987754 567889999999999999999999999998876543 67889999999999999999999
Q ss_pred HhhcCCCCCHHH-----HHHHHHHHH--HhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808 610 SGLGIDPSNIEC-----LYLRASCYH--AIGEYREAIKDYDAALDLELDSMEKFVLQCL 661 (676)
Q Consensus 610 ~al~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 661 (676)
++++++|+.... +..++..+. ..+++++|+..|++++.++|.....+..+-.
T Consensus 224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 999999886543 444555554 4577999999999999999987665544433
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.83 E-value=2.5e-19 Score=174.36 Aligned_cols=213 Identities=15% Similarity=0.055 Sum_probs=160.8
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---H
Q 005808 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---G 449 (676)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~ 449 (676)
..+.++..++.+|..++..|+|++|+..|+++++.+|.+ +.+++.+|.+++..|++++|+..|++++...|++ .
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 467778999999999999999999999999999999988 8899999999999999999999999999998754 6
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808 450 EAWKRRGQARAA--------LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (676)
Q Consensus 450 ~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 521 (676)
.+++.+|.++.. .|++++|+..|++++..+|+++.+...+..+....+. ....++
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~ 152 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHHH
Confidence 788999999999 9999999999999999999876555333222111111 122356
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCcCcH---
Q 005808 522 YLGLALSSIGEYKKAEEAHLKAIQLDRN---FLEAWGHLTQFYQDL----------ANSEKALECLQQVLYIDKRFS--- 585 (676)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~~~~~--- 585 (676)
.+|.++...|++++|+..|+++++..|+ .+.++..+|.+|... |++++|+..|+++++..|+++
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6677777777777777777777777666 456677777777655 677777777777777777663
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 005808 586 KAYHLRGLLLHGLGQHKKAI 605 (676)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~ 605 (676)
.+...++.++...++++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 44555666666666665443
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=2e-18 Score=177.67 Aligned_cols=271 Identities=16% Similarity=0.084 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------H
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G 449 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~ 449 (676)
...+..+|..+...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...|.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 56778889999999999999999999999877552 267889999999999999999999999875533 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----C
Q 005808 450 EAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----N 516 (676)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~ 516 (676)
.++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|...+++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 346789999999999999999999999764 334557788999999999999999999999998765 2
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHhcCcCc----H
Q 005808 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAW-----GHLTQFYQDLANSEKALECLQQVLYIDKRF----S 585 (676)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~-----~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~ 585 (676)
..++..+|.++...|++++|..++++++...+. .+..+ ...+.++...|++++|...+.+++...+.. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 467888999999999999999999999876332 21111 134556889999999999999998776542 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
..+..+|.++...|++++|...+++++...+. ...++..+|.++...|++++|...+++++.+.+.
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 35788999999999999999999999876432 2358888999999999999999999999987653
No 77
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=3.9e-19 Score=196.84 Aligned_cols=188 Identities=11% Similarity=-0.078 Sum_probs=132.6
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Q 005808 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQIL--------KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (676)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 446 (676)
..+|.++..++..| ...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34555666666555 56677777777777777 66677777777777777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (676)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (676)
++..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++..+++.+|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777 777777777777777777777777
Q ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Q 005808 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 566 (676)
+...|++++|+..|+++++++|++..++.++|.++...++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777777777777777665444
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=4.9e-19 Score=196.07 Aligned_cols=187 Identities=13% Similarity=0.016 Sum_probs=170.1
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005808 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKAL--------EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (676)
Q Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 515 (676)
.+|+++.+++..+ ...|++++|+..+++++ ..+|++..++..+|.++...|++++|+..++++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4677777776666 77899999999999999 888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q 005808 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (676)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 595 (676)
+..+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++ +..|+++++.+|+++.+++++|.++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcc
Q 005808 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (676)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (676)
...|++++|+..|+++++.+|++..+++.+|.++...|+
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999877555
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.81 E-value=1.3e-18 Score=179.30 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH
Q 005808 417 ALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN-------SA 483 (676)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 483 (676)
.++.+|..+...|++++|+.+|++++...+ ....++..+|.++...|+++.|+.++++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 455667777777777777777777766532 13456777777777777777777777777765332 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHcccHHHHHHHHHHHHh-----cCcccHH
Q 005808 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDK---E---NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LDRNFLE 552 (676)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 552 (676)
.++..+|.++...|++++|+..+++++...+ + ...++..+|.++...|++++|+.++++++. .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 4677788888888888888888888877532 1 235677889999999999999999999888 6777788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHHH
Q 005808 553 AWGHLTQFYQDLANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYL 624 (676)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 624 (676)
++..+|.++...|++++|+.++++++...+ .....+..++.++...++ +.+|+.++++. ...|....++..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 899999999999999999999999988743 334556778888888888 88888888873 333445678889
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhCC
Q 005808 625 RASCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
+|.+|...|++++|..+|+++++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.81 E-value=1.4e-18 Score=162.39 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (676)
.+.++..|..+...|++++|+..|++++..+|+++.+++..+. ... ....+.....+|.++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~-------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN-------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT-------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch-------------hhhhHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666665555110 000 0000112223777777
Q ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC--HHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ--HKKAIK 606 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~ 606 (676)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+ ...+..
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777665543 344555
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (676)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (676)
.+.+++...|. ..+++.+|.++...|++++|+.+|+++++++|+..
T Consensus 146 ~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 146 DYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 66665543332 34566677777777777777777777777777643
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=9.3e-19 Score=173.21 Aligned_cols=220 Identities=17% Similarity=0.127 Sum_probs=172.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 005808 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEAWKRRGQARAALGESVEAI 469 (676)
Q Consensus 396 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~ 469 (676)
++++|+..|.++ |.++...|++++|+..|.+++.+.+. ...++..+|.++...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888877 56677888888888888888877432 2567888899999999999999
Q ss_pred HHHHHHHhcCCCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHH
Q 005808 470 QDLSKALEFEPNS------ADILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKA 536 (676)
Q Consensus 470 ~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A 536 (676)
.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++.+.|.. ..++..+|.++..+|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999988876543 45788899999996 99999999999999887654 45688899999999999999
Q ss_pred HHHHHHHHhcCcccHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH-----HHHHHHHHH--HcCCHH
Q 005808 537 EEAHLKAIQLDRNFLE-------AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA-----YHLRGLLLH--GLGQHK 602 (676)
Q Consensus 537 ~~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~la~~~~--~~g~~~ 602 (676)
+.+|+++++..|++.. ++..+|.++...|++++|+..|++++.++|..... +..++..+. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999998877532 67889999999999999999999999988876543 444555554 467899
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 005808 603 KAIKDLSSGLGIDPSNIECLYLRASCY 629 (676)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (676)
+|+..|++++.++|....++..+-...
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999999887766666555444
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.80 E-value=2.6e-18 Score=157.12 Aligned_cols=172 Identities=19% Similarity=0.216 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 562 (676)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34556666677777777777777777766666667777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 005808 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642 (676)
Q Consensus 563 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 642 (676)
..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777788888888888888888888
Q ss_pred HHHHhhCCCcHH
Q 005808 643 DAALDLELDSME 654 (676)
Q Consensus 643 ~~al~~~p~~~~ 654 (676)
+++++.+|++..
T Consensus 168 ~~~~~~~~~~~~ 179 (186)
T 3as5_A 168 KKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHCCCG
T ss_pred HHHHHcCCCchh
Confidence 888777776543
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=3.1e-18 Score=160.14 Aligned_cols=185 Identities=18% Similarity=0.074 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (676)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (676)
++..++..|..+...|++++|+..|++++..+|+++.+++..+. ... ....+.....+|.++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~-------------~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN-------------SEISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT-------------SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch-------------hhhhHHHHHHHHHHH
Confidence 57788999999999999999999999999999999988877321 000 000123344566666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHH
Q 005808 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN--SEKAL 571 (676)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~ 571 (676)
...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ ...+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666655443 33445
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 572 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (676)
..+.+++...|. ..+++.+|.++...|++++|+.+|+++++++|+
T Consensus 145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 555555433222 234566677777777777777777777777775
No 84
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.79 E-value=1.3e-16 Score=156.61 Aligned_cols=249 Identities=14% Similarity=0.112 Sum_probs=180.5
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 005808 389 IAQVNEGKYA-SAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (676)
Q Consensus 389 ~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~ 457 (676)
......|.+. +|+..+..++..+|++..+|...+.++...+. +++++.++..++..+|.+..+|...+.
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3344667775 79999999999999999999999999988776 678888888888888888888888888
Q ss_pred HHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 005808 458 ARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSI---- 530 (676)
Q Consensus 458 ~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---- 530 (676)
++...+. +++++.++.++++.+|.+..+|...+.+....|. +++++.++.+++..+|.+..+|..++.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 8888884 7888888888888888888888888888888887 58888888888888888888888888887776
Q ss_pred ----------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC
Q 005808 531 ----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (676)
Q Consensus 531 ----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (676)
+.++++++++.+++..+|++..+|+.+..++... |. +... -...+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~---------------~~~~---------~~~~~ 252 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR---------------CELS---------VEKST 252 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG---------------GGCC---------HHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc---------------cccc---------hHHHH
Confidence 3455666666666666666666665444443332 10 0000 00113
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 005808 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYH---AIGEYREAIKDYDAALDLELDSMEKFVLQCL 661 (676)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 661 (676)
.++++++.+.++++..|++...+..++.+.. ..|..++...++.+.+++||.....|..+..
T Consensus 253 ~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 253 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 4667777777777777776544444443322 2456778888888888888887776655543
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=5.5e-18 Score=154.98 Aligned_cols=170 Identities=15% Similarity=0.233 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
...++.+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 55667777777777888888888877777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (676)
..|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCccc
Q 005808 541 LKAIQLDRNF 550 (676)
Q Consensus 541 ~~al~~~p~~ 550 (676)
+++++..|++
T Consensus 168 ~~~~~~~~~~ 177 (186)
T 3as5_A 168 KKANELDEGA 177 (186)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHcCCCc
Confidence 7777766654
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.79 E-value=2.5e-18 Score=177.20 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-------
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------- 447 (676)
...++.+|..++..|++++|+..|++++...+ ..+.++..+|.++...|+++.|+.++.+++...+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 34678899999999999999999999997632 23678999999999999999999999999987543
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCC
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVK-----LDKEN 516 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~~~~ 516 (676)
...++..+|.++...|++++|+.+|++++...+. ...++..+|.+|...|++++|+.++++++. .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 2457889999999999999999999999986431 245788999999999999999999999999 77878
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcCcHHHH
Q 005808 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKAY 588 (676)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~ 588 (676)
..++..+|.++...|++++|+.++++++... |.....+..++.++...++ +.+|+..+++. ...+.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 8899999999999999999999999999984 3445567788888888888 88888888773 2334556778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 589 HLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
..+|.+|...|++++|..+|+++++.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999865
No 87
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2e-19 Score=180.77 Aligned_cols=244 Identities=14% Similarity=0.098 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
...+...|..++..|.|++|+.+|.++ ..|..+|.++.+.|++++|++.+.++ .++.+|.....++.
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv 188 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 188 (449)
T ss_dssp ---------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence 348888999999999999999999977 46889999999999999999999998 47889999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cccHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS--IGEYKKAEE 538 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~ 538 (676)
..|+++.|..+... +.. +++-...++.+|...|++++|+.+++.++.+++.....+..+|.++.+ .++..+.++
T Consensus 189 ~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~ 264 (449)
T 1b89_A 189 DGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 264 (449)
T ss_dssp HTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999777765 223 444455688899999999999999999999999999999999888865 567777888
Q ss_pred HHHHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CcCcHHHHHHHHHHHHHcCCH
Q 005808 539 AHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQQVLYI------------DKRFSKAYHLRGLLLHGLGQH 601 (676)
Q Consensus 539 ~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~ 601 (676)
.|...+.+.| .+...|..+..+|...++++.|+..+-..... .+.+.+.++.....|. +..
T Consensus 265 ~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~ 342 (449)
T 1b89_A 265 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFK 342 (449)
T ss_dssp HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHC
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcC
Confidence 8877777777 67888999999999999999998877655333 3456777887777777 455
Q ss_pred HHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 602 KKAIKDLSSGL--GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 602 ~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
..++..+..++ .++++ .....+.+.|+..-...+++.+...+
T Consensus 343 p~~l~~ll~~l~~~ld~~------r~v~~~~~~~~l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 343 PLLLNDLLMVLSPRLDHT------RAVNYFSKVKQLPLVKPYLRSVQNHN 386 (449)
T ss_dssp GGGHHHHHHHHGGGCCHH------HHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCcH------HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 67788888888 44442 23345577788888888887666543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=1.8e-18 Score=170.03 Aligned_cols=202 Identities=14% Similarity=0.062 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Q 005808 448 AGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL------- 512 (676)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 512 (676)
...++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++..
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555555555555555555555555544 2333445666666666666666666666666655
Q ss_pred -CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 005808 513 -DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--- 580 (676)
Q Consensus 513 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 580 (676)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2444556666677777777777777777776666 5556667777777777777777777777777654
Q ss_pred ------CcCcHHHHHHHHHHHHHcCC------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Q 005808 581 ------DKRFSKAYHLRGLLLHGLGQ------HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 581 ------~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 648 (676)
.+.....+..++..+...+. +..+...+.......|....++..+|.+|..+|++++|..+|++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33344556666665555433 444555555555556666788888899999999999999998888875
Q ss_pred C
Q 005808 649 E 649 (676)
Q Consensus 649 ~ 649 (676)
.
T Consensus 282 ~ 282 (283)
T 3edt_B 282 R 282 (283)
T ss_dssp C
T ss_pred h
Confidence 3
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=5e-19 Score=155.77 Aligned_cols=143 Identities=15% Similarity=0.062 Sum_probs=118.1
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCH
Q 005808 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (676)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 601 (676)
.||.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHH-HHHHHhhCCCcHHHHHHHHHHHH
Q 005808 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD-YDAALDLELDSMEKFVLQCLAFY 664 (676)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~~~~~~ 664 (676)
++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888776654 58888888888888776666553
No 90
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.78 E-value=1.2e-16 Score=156.77 Aligned_cols=210 Identities=12% Similarity=0.160 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHH
Q 005808 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGE----------SVEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFN 500 (676)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~ 500 (676)
+|+..+.+++..+|++..+|...+.+....+. +++++..+..++..+|.+..+|...+.++...+ .++
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 56777777777777777777776666665544 345555555555555555555555555555555 255
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGE-YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (676)
Q Consensus 501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 579 (676)
+++.++.+++..+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|..++.++...+....+
T Consensus 128 ~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~--------- 198 (331)
T 3dss_A 128 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS--------- 198 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc---------
Confidence 55555555555555555555555555555554 35555555555555555555555555554443110000
Q ss_pred cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhh
Q 005808 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDAALDL 648 (676)
Q Consensus 580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~ 648 (676)
+ . .+ -...+.++++++++.+++..+|++..+|+.+..++... +.++++++++++++++
T Consensus 199 --~--~-----~~--~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 199 --G--P-----QG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --c--c-----cc--ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 0 0 00 00003355666666666666666666665444444433 6789999999999999
Q ss_pred CCCcHHHHHHHHHHHH
Q 005808 649 ELDSMEKFVLQCLAFY 664 (676)
Q Consensus 649 ~p~~~~~~~~~~~~~~ 664 (676)
+|++. |..++.+.+
T Consensus 268 ~pd~~--w~l~~~~~~ 281 (331)
T 3dss_A 268 EPENK--WCLLTIILL 281 (331)
T ss_dssp CTTCH--HHHHHHHHH
T ss_pred Ccccc--hHHHHHHHH
Confidence 99994 555555444
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=7.1e-19 Score=154.80 Aligned_cols=143 Identities=13% Similarity=0.001 Sum_probs=61.2
Q ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 005808 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (676)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 501 (676)
|.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH-HHHHHhcCcccHHHHHHHHHHHHHc
Q 005808 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA-HLKAIQLDRNFLEAWGHLTQFYQDL 564 (676)
Q Consensus 502 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~ 564 (676)
|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444444333322 2444444444444444444444333
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=2.7e-18 Score=168.77 Aligned_cols=224 Identities=14% Similarity=0.079 Sum_probs=180.6
Q ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHH
Q 005808 392 VNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRR 455 (676)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l 455 (676)
...|++++|+..|+++++. .|..+.++..+|.++...|++++|+.++++++.. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777788888777763 2556788999999999999999999999999987 35567789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 005808 456 GQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------DKENKSA 519 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~ 519 (676)
|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++.. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999987 4566778999999999999999999999999998 6666788
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCcCc
Q 005808 520 YTYLGLALSSIGEYKKAEEAHLKAIQLD---------RNFLEAWGHLTQFYQDLAN------SEKALECLQQVLYIDKRF 584 (676)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~~~~ 584 (676)
+..+|.++...|++++|+.+++++++.. +.....+..++..+...+. +..+...+.......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999999873 3345566677766665444 334444444444445667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 005808 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (676)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (676)
..++..+|.++...|++++|+.+|+++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999998753
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=4.1e-17 Score=154.64 Aligned_cols=205 Identities=15% Similarity=0.086 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---HHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---AWKR 454 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~ 454 (676)
+..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.+++..|++++|+..|+++++.+|++.. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 5566677777777777777777777777766654 356667777777777777777777777777666542 5666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH
Q 005808 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 534 (676)
+|.++...|.. ....+..++..+...|++++|+..|+++++..|++..++..+..+
T Consensus 84 ~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l-------- 139 (225)
T 2yhc_A 84 RGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL-------- 139 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH--------
T ss_pred HHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH--------
Confidence 66666554321 111122334444444555555555555555555444332211111
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
+.+. .........+|.++...|++.+|+..|+++++.
T Consensus 140 -----------------------~~~~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 140 -----------------------VFLK--------------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp -----------------------HHHH--------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------------------HHHH--------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 1000 000112244566666666666666666666666
Q ss_pred CCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 615 DPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 615 ~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
.|+++ .++..+|.++.++|++++|+..++++....|++
T Consensus 177 ~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 177 YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 66554 456666666666666666666666666666654
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=1.8e-17 Score=157.12 Aligned_cols=187 Identities=13% Similarity=0.093 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---AYTY 522 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~ 522 (676)
+..++.+|..+...|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++..|++.. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455556666666666666666666666665544 245666666666666666666666666666665542 5566
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHH
Q 005808 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (676)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (676)
+|.++...+.. ....+..++..+...|++++|+..|+++++..|+++.++..+..+....+
T Consensus 84 ~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~--- 144 (225)
T 2yhc_A 84 RGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD--- 144 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH---
T ss_pred HHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH---
Confidence 66666554421 11223345556666778888888888888888877655433222111110
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhhh
Q 005808 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM---EKFVLQCLAFYQVLF 668 (676)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~ 668 (676)
......+.+|.+|...|++++|+..|+++++..|+++ +++..++.++.+...
T Consensus 145 --------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 145 --------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp --------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 0122446789999999999999999999999999986 678889998887653
No 95
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.3e-18 Score=175.03 Aligned_cols=206 Identities=16% Similarity=0.110 Sum_probs=136.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 463 (676)
...++.+|...|++.++..+++ .|+ ..+|..+|..++..|.|++|+.+|.++ ..|..+|.++..+|
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG 162 (449)
T ss_dssp ------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhc
Confidence 3456777888888888887775 243 458888888888889999988888876 35778888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (676)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (676)
++++|++.++++ .++.+|...+.++...|+++.|..+.... ..+| +-...+..+|.+.|.+++|+.+++++
T Consensus 163 ~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~a---d~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 163 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHA---DELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCH---HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhCH---hhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888 46788888888888888888887766642 2333 33445778888888888888888888
Q ss_pred HhcCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808 544 IQLDRNFLEAWGHLTQFYQD--LANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (676)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (676)
+.+++.+..++..+|.+|.+ .++..+.++.|...+.+.| ..+..|..+..+|.+.++|+.|+..+-...
T Consensus 234 L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 234 LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 88888888888888887764 4556666666666666666 666778888888888888888887666543
No 96
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=2e-16 Score=155.64 Aligned_cols=254 Identities=15% Similarity=0.077 Sum_probs=164.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C-CHHHH
Q 005808 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-G-ESVEA 468 (676)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g-~~~~A 468 (676)
...+..++|+.++.+++..+|++..+|..++.++...| .+++++..+..++..+|++..+|...+.++... + +++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 34445578888888888888888888888888888888 488888888888888888888888888888877 7 78888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-------H
Q 005808 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFN--------AAVEDLSACVKLDKENKSAYTYLGLALSSIGE-------Y 533 (676)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-------~ 533 (676)
+..+.+++..+|.+..+|...+.+....|.++ ++++++.++++.+|.+..+|..++.++...+. +
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 88888888888888888888888877777666 67777777777777777777777776666654 4
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (676)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (676)
+++++++.+++..+|++..+|+.+..++...|+...- . ....-|.. +.+.. ....-.......+
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~--~---~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP--I---LPAILPYTASKLNP----------DIETVEAFGFPMP 289 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG--G---HHHHGGGTC------------------------CCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc--c---cccccccccccccc----------cchhHHHHHHHHH
Confidence 5555555555555555555555555555544432000 0 00000000 00000 0111122222222
Q ss_pred cC------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-hhCCCcHHHHHHHH
Q 005808 613 GI------DPSNIECLYLRASCYHAIGEYREAIKDYDAAL-DLELDSMEKFVLQC 660 (676)
Q Consensus 613 ~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~ 660 (676)
.. .+..+.++..++.+|...|+.++|.+.++... +.+|-....|....
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 21 24567777788888888888888888887776 56777666665443
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=6.1e-16 Score=159.00 Aligned_cols=251 Identities=14% Similarity=0.045 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------A 483 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 483 (676)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...|.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45677889999999999999999999999877552 267789999999999999999999999875533 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----c
Q 005808 484 DILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----F 550 (676)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~ 550 (676)
.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 347789999999999999999999999874 233567788999999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CcHHHHH-----HHHHHHHHcCCHHHHHHHHHHhhcCCCCC----H
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYH-----LRGLLLHGLGQHKKAIKDLSSGLGIDPSN----I 619 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~p~~----~ 619 (676)
..++..+|.++...|++++|...+++++...+ ..+..+. .++.++...|++++|...+++++...|.. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 56788999999999999999999999987632 2211121 34566889999999999999999877653 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHH
Q 005808 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS------MEKFVLQCLAFYQ 665 (676)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~ 665 (676)
..+..++.++...|++++|...+++++...+.. ...+..++.++..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 467889999999999999999999998875532 2345555555543
No 98
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=9.2e-16 Score=151.00 Aligned_cols=168 Identities=9% Similarity=-0.002 Sum_probs=157.5
Q ss_pred hHHHHHHhhccCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-cHHHHHHHHHHHH
Q 005808 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEG-KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-R-ELEAAISDFTEAI 442 (676)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al 442 (676)
.-.....++..+|.+..++..++.++...| .+++++..++.++..+|.+..+|..++.++... + ++++++..+.+++
T Consensus 73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 444667788999999999999999999999 599999999999999999999999999999998 7 8999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHH
Q 005808 443 QSNPSAGEAWKRRGQARAALGESV--------EAIQDLSKALEFEPNSADILHERGIVNFKFKD-------FNAAVEDLS 507 (676)
Q Consensus 443 ~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~ 507 (676)
+.+|.+..+|...+.+....|.++ +++++++++++.+|.+..+|...+.++...++ ++++++++.
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~ 232 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYIL 232 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 999999999999999999998888 99999999999999999999999999999987 799999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcccH
Q 005808 508 ACVKLDKENKSAYTYLGLALSSIGEY 533 (676)
Q Consensus 508 ~al~~~~~~~~~~~~la~~~~~~g~~ 533 (676)
+++..+|++..+|..+..++...|..
T Consensus 233 ~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 233 KSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999888887753
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=4.5e-17 Score=138.27 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=106.3
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 005808 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (676)
Q Consensus 542 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 621 (676)
++..++|+....+..+|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34457888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (676)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (676)
|+.+|.++..+|++++|+..|+++++++|++.+++..++.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999998887766654
No 100
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.73 E-value=7e-14 Score=151.81 Aligned_cols=225 Identities=10% Similarity=-0.041 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI-QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (676)
Q Consensus 431 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (676)
.......|++++...|..+..|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|+++.|..+|+++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345678899999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHhC-----------CC-----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCC
Q 005808 510 VKLD-----------KE-----------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNFLEAWGHLTQFYQDLAN 566 (676)
Q Consensus 510 l~~~-----------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~ 566 (676)
+... |. ...+|...+.+..+.|+.+.|..+|.++++. .+....+|...+.+....++
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 8752 43 3457888889888999999999999999987 44456778777877777654
Q ss_pred -HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHhccHHHHHHHH
Q 005808 567 -SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDY 642 (676)
Q Consensus 567 -~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~ 642 (676)
++.|..+|+.+++..|+++..|...+......|+.+.|..+|++++...|+ ...+|..........|+.+.+...+
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998873 5578888888899999999999999
Q ss_pred HHHHhhCCCcHHH
Q 005808 643 DAALDLELDSMEK 655 (676)
Q Consensus 643 ~~al~~~p~~~~~ 655 (676)
+++.+..|++...
T Consensus 565 ~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 565 KRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHSTTCCHH
T ss_pred HHHHHhCCCCcHH
Confidence 9999999998653
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.72 E-value=4e-17 Score=148.11 Aligned_cols=164 Identities=12% Similarity=-0.003 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 562 (676)
.+.++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 344566666777777777777777777777777777777777777777777777777777776666 5555444443322
Q ss_pred -HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHhccHHHHH
Q 005808 563 -DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYREAI 639 (676)
Q Consensus 563 -~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~ 639 (676)
..+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+|.++..+|+.++|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333456788888888888888888888888888888888888888888888764 557888888888888888888
Q ss_pred HHHHHHHh
Q 005808 640 KDYDAALD 647 (676)
Q Consensus 640 ~~~~~al~ 647 (676)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.71 E-value=4e-17 Score=148.13 Aligned_cols=164 Identities=11% Similarity=0.073 Sum_probs=102.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 459 (676)
..+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++..+..++.+.
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 3455666777777777777777777777777777777777777777777777777777777777776 555544444332
Q ss_pred H-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHH
Q 005808 460 A-ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKA 536 (676)
Q Consensus 460 ~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A 536 (676)
. ..+...+|+..+++++..+|+++.+++.+|.++...|++++|+..++++++.+|+. ..++..+|.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2 22223345666666666666666666666666666666666666666666666543 34566666666666666666
Q ss_pred HHHHHHHH
Q 005808 537 EEAHLKAI 544 (676)
Q Consensus 537 ~~~~~~al 544 (676)
+..|++++
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=1.7e-16 Score=134.61 Aligned_cols=118 Identities=16% Similarity=0.220 Sum_probs=82.0
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHH
Q 005808 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 454 (676)
..+|..++.+..+|..++..|+|++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|++..+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34555666666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (676)
+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777777777776666666554
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.71 E-value=5.9e-17 Score=141.58 Aligned_cols=123 Identities=7% Similarity=-0.001 Sum_probs=113.6
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (676)
Q Consensus 531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (676)
+++-.+-..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 33444445677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcH
Q 005808 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (676)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 653 (676)
++.++|+++.+++.+|.+|..+|++++|+..|++++++.|+.+
T Consensus 96 al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999876
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=3.8e-16 Score=153.75 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 005808 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (676)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 559 (676)
|.+...+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444433444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHhccHHH
Q 005808 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYRE 637 (676)
Q Consensus 560 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~ 637 (676)
.+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++..+|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 44444444555555555555555555555555555555555555555555555555544 4455555555555555555
Q ss_pred HHHHHHHHH
Q 005808 638 AIKDYDAAL 646 (676)
Q Consensus 638 A~~~~~~al 646 (676)
|...|++++
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=4.7e-16 Score=154.90 Aligned_cols=231 Identities=15% Similarity=0.058 Sum_probs=174.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (676)
Q Consensus 393 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (676)
..|++++|..+++++.+..+.. ++. .++++.|+..|.++ |.++...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4578888999998888766542 111 47888888888765 5677888899999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcccHHHHHHH
Q 005808 472 LSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--N----KSAYTYLGLALSSIGEYKKAEEA 539 (676)
Q Consensus 472 ~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~ 539 (676)
|.+++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+. + ..++..+|.++.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 98888775422 447888899999999999999999998887432 1 3577889999988 999999999
Q ss_pred HHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHH
Q 005808 540 HLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKD 607 (676)
Q Consensus 540 ~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~ 607 (676)
|++++.+.|.. ..++..+|.++..+|++++|+.+|++++...|.. ..++..+|.++...|++++|+.+
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999887653 5778899999999999999999999999876533 34778889999999999999999
Q ss_pred HHHhhcCCCCCH-----HHHHHHHHHHHHhccHHHHHHH--HHHHHhhCC
Q 005808 608 LSSGLGIDPSNI-----ECLYLRASCYHAIGEYREAIKD--YDAALDLEL 650 (676)
Q Consensus 608 ~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p 650 (676)
|++++ .+|... .....++..+ ..|+.+.+... +..+..++|
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~~~~~~~ld~ 265 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPLVTYMDN 265 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTTSHHHHTSCH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHhCchhhhhhH
Confidence 99999 888653 2344455554 45665444331 344444444
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.69 E-value=6.8e-16 Score=151.97 Aligned_cols=169 Identities=10% Similarity=0.033 Sum_probs=118.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (676)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 456 (676)
.|.+.+.++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 36666777777777777777777777777777777777777777777777777777777777777777776555555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHH
Q 005808 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYK 534 (676)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~ 534 (676)
..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..+.++++.+|++ ..++..++.++...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 666666666667777777777777777777777777777777777777777777777766 666666777777777766
Q ss_pred HHHHHHHHHHh
Q 005808 535 KAEEAHLKAIQ 545 (676)
Q Consensus 535 ~A~~~~~~al~ 545 (676)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 67666666553
No 108
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=2.1e-16 Score=135.75 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcccCC--------hh-----HHHHHHHHHHHhhCHHHHHHHHHHHHHh-----
Q 005808 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYE--------IQ-----DICNRAFCYSQLELHKHVIRDCDKALQL----- 98 (676)
Q Consensus 37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~--------~~-----~~~~ra~~~~~~g~~~~A~~~~~~al~~----- 98 (676)
......+..+|..|+|++|+.+|++||+++|+ +. +|+|+|.|+.++|+|++|+.+|++||++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44445778899999999999999999999966 22 7999999999999999999999999999
Q ss_pred --CCCChhHH----HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHH
Q 005808 99 --DPTLLQAY----ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLE 145 (676)
Q Consensus 99 --~p~~~~a~----~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 145 (676)
+|+++++| +++|.++..+|++++|+.+|++|+++.|+.......+..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999 999999999999999999999998888876655444433
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.68 E-value=4.7e-16 Score=169.36 Aligned_cols=165 Identities=10% Similarity=-0.020 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (676)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (676)
.|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc---CCHHHHHHHHHHhhcCCCCC
Q 005808 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL---GQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 542 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 618 (676)
++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++... |++++|...++++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 777777777777777777777777777777777777777777777777777777777 77777777777777777776
Q ss_pred HHHHHHHH
Q 005808 619 IECLYLRA 626 (676)
Q Consensus 619 ~~~~~~la 626 (676)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 66665555
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=5e-16 Score=154.73 Aligned_cols=203 Identities=13% Similarity=0.022 Sum_probs=172.4
Q ss_pred HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005808 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506 (676)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 506 (676)
..|++++|..+++++.+..+.. .+...+++++|+.+|.++ |.+|...|++++|+..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 4688999999999998876642 011158899999998876 66888999999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 507 SACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECL 574 (676)
Q Consensus 507 ~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~ 574 (676)
.+++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+. ...++.++|.+|.. |++++|+.+|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 9999886432 457889999999999999999999999988543 25788999999998 9999999999
Q ss_pred HHHHhcCcCc------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhccHHHHHHHH
Q 005808 575 QQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDY 642 (676)
Q Consensus 575 ~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 642 (676)
++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999887643 5788999999999999999999999999876543 347888999999999999999999
Q ss_pred HHHHhhCCCcHH
Q 005808 643 DAALDLELDSME 654 (676)
Q Consensus 643 ~~al~~~p~~~~ 654 (676)
++++ ++|+...
T Consensus 219 ~~al-~~p~~~~ 229 (307)
T 2ifu_A 219 RESY-SIPGFSG 229 (307)
T ss_dssp HHHT-TSTTSTT
T ss_pred HHHh-CCCCCCC
Confidence 9999 9997643
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.68 E-value=1.1e-15 Score=166.54 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=129.3
Q ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005808 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507 (676)
Q Consensus 428 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (676)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47888899999999988898888899999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCcCc
Q 005808 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANSEKALECLQQVLYIDKRF 584 (676)
Q Consensus 508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~ 584 (676)
++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++... |++++|+..++++++.+|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999988888899999999999999999999999999898888888999999888 88999999999999888887
Q ss_pred HHHHHHHH
Q 005808 585 SKAYHLRG 592 (676)
Q Consensus 585 ~~~~~~la 592 (676)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 76666554
No 112
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=4.3e-16 Score=148.27 Aligned_cols=208 Identities=14% Similarity=0.074 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcccHHHHHHHHHHHHHhCCCcH----
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTEAIQSNPSAG---- 449 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~---- 449 (676)
...++..|.-+ ..+++..|...|.+++..+|..+++|..+ +.++...++..+++..+.+.+.+.|...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 34556666665 57888888888888888888888888888 7888888888888888888888766542
Q ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005808 450 -----------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (676)
Q Consensus 450 -----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (676)
++...++.++...|++++|.+.|..++...|.+. +.+.+|.+++..++|++|+..++.+...
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 3444466777777777777777777777777666 7777777777777777777777766543
Q ss_pred CCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHH
Q 005808 513 DKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (676)
Q Consensus 513 ~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 587 (676)
.+.. ..+++.+|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..+
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 2111 2466777777777777777777777776433 44 4567777777777777777777777777777776 555
Q ss_pred HHHH
Q 005808 588 YHLR 591 (676)
Q Consensus 588 ~~~l 591 (676)
+..+
T Consensus 244 ~~aL 247 (282)
T 4f3v_A 244 AAAL 247 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=4.9e-16 Score=147.89 Aligned_cols=197 Identities=12% Similarity=0.056 Sum_probs=152.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHhCCCC-----------------
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHER-------GIVNFKFKDFNAAVEDLSACVKLDKEN----------------- 516 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~~~~----------------- 516 (676)
..+++..|...|.+++..+|...++|..+ +.++...++..+++..+.+.+.+.|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 35666677777777777777777777666 566666666666766777666655442
Q ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc--HHHHHH
Q 005808 517 ----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHL 590 (676)
Q Consensus 517 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~ 590 (676)
..+...++.++...|++++|.+.|..++...|.+. ..+.+|.++.+.+++++|+..|+.+....+.. ..+++.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 24555678888889999999999988888888888 88889999999999999999998776543221 357889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCC--CC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808 591 RGLLLHGLGQHKKAIKDLSSGLGID--PS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (676)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (676)
+|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..+
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 9999999999999999999998544 55 5678999999999999999999999999999998 6654433
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=1.2e-15 Score=149.66 Aligned_cols=197 Identities=13% Similarity=0.053 Sum_probs=120.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (676)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (676)
.+...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHH
Q 005808 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (676)
+...|++++|+..|+++++.+|+++..+...+.... ...++..+........+.++.+...++.++ .|++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 666666666666666666666554221111111111 111222222233344555666666666554 578888888
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhh
Q 005808 607 DLSSGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDL 648 (676)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 648 (676)
.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888888888777777777777666 6678888888877664
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.65 E-value=6.8e-16 Score=134.82 Aligned_cols=107 Identities=13% Similarity=-0.011 Sum_probs=43.2
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005808 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (676)
Q Consensus 442 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 521 (676)
+.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.+++
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 33333333344444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCc
Q 005808 522 YLGLALSSIGEYKKAEEAHLKAIQLDR 548 (676)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~p 548 (676)
.+|.++..+|++++|+..|++++++.|
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444444444444444444444444333
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.65 E-value=8.4e-15 Score=137.04 Aligned_cols=174 Identities=12% Similarity=0.016 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----cHHHHHHHHHHH
Q 005808 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG----EYKKAEEAHLKA 543 (676)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a 543 (676)
|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 34444444433 34444444444444444444444444444432 344444445554444 3 455555555554
Q ss_pred HhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhc
Q 005808 544 IQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLG 613 (676)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 613 (676)
.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ ..+.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 32 3344555555555544 4555555555555555544 235555555555555 5556666666666555
Q ss_pred CCCCCHHHHHHHHHHHHHh-c-----cHHHHHHHHHHHHhhC
Q 005808 614 IDPSNIECLYLRASCYHAI-G-----EYREAIKDYDAALDLE 649 (676)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~ 649 (676)
. |.++.+++.+|.+|... | ++++|+.+|+++.+..
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5 34445556666655543 2 5666666666665553
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=3.6e-17 Score=164.81 Aligned_cols=201 Identities=21% Similarity=0.179 Sum_probs=134.2
Q ss_pred HcccHHHHHHHHHH----HHHhCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005808 427 FQRELEAAISDFTE----AIQSNPSAGEAWKRRGQARA------------ALGESVEAIQDLSKALEFEPNSADILHERG 490 (676)
Q Consensus 427 ~~g~~~~A~~~~~~----al~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 490 (676)
..+.+++|+..+.. ++.+.|.. ++...|.... .++++++|+..+++++...|....++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 34578888888888 78888875 3333333321 233444555555555555555555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Q 005808 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570 (676)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 570 (676)
.+++..|++++|+..|++++...|.+... .. .......|....++.++|.++...|++++|
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~------------~~-------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A 215 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSF------------SN-------EEAQKAQALRLASHLNLAMCHLKLQAFSAA 215 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCC------------CS-------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccC------------Ch-------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555555555544210 00 011111222267888888888888888888
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHHhh
Q 005808 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDYDAALDL 648 (676)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 648 (676)
+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888 4566666654
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=2.1e-14 Score=134.25 Aligned_cols=175 Identities=17% Similarity=0.086 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 005808 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK----DFNAAVEDLSA 508 (676)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~ 508 (676)
+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 355566666553 45666666666666666666666666666554 356666666666666 5 66667777666
Q ss_pred HHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 005808 509 CVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQD----LANSEKALECLQQVL 578 (676)
Q Consensus 509 al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~al 578 (676)
+.. +.++.+++.+|.+|.. .+++++|+.+|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++.
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 643 3566666677776665 6667777777777776666 346677777777776 667777777777776
Q ss_pred hcCcCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHhhcCC
Q 005808 579 YIDKRFSKAYHLRGLLLHGL-G-----QHKKAIKDLSSGLGID 615 (676)
Q Consensus 579 ~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~ 615 (676)
+. +.++.+++.+|.+|... | ++++|+.+|+++.+..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66 44556677777776653 2 6777777777776653
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.63 E-value=2e-15 Score=148.07 Aligned_cols=197 Identities=16% Similarity=0.092 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005808 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (676)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (676)
|.++..+..+|..++..|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++..+|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556666666666666666666666666666666666666667777777777777777777777777766667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Q 005808 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (676)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 571 (676)
++...|++++|+..+++++..+|++...+........ ...++...........|.+..+...++.++ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 7777777777777777776666644211111111111 111122222233344555555555555544 57777777
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHc-CCHHHHHHHHHHhhc
Q 005808 572 ECLQQVLYIDKRFSKAYHLRGLLLHGL-GQHKKAIKDLSSGLG 613 (676)
Q Consensus 572 ~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 613 (676)
+.++++++.+|++......++.++... +.+++|...|.++.+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777777777766666666666655 567777777777765
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=1.7e-15 Score=132.64 Aligned_cols=119 Identities=21% Similarity=0.135 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 005808 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (676)
Q Consensus 537 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (676)
-..+++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHH
Q 005808 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (676)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 655 (676)
+++.+++.+|.++..+|++++|+.+|+++++++|+++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999999999999999998887654
No 121
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=4.8e-15 Score=125.97 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCCh-------hHH
Q 005808 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL-------QAY 106 (676)
Q Consensus 35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~ 106 (676)
.+...+-.+..+|.+|+|++|+.+|++||+++ .++..|+|+|.||+++|+|++|+.+|++||+++|++. .+|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 44556667788999999999999999999999 5566799999999999999999999999999999864 589
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHH
Q 005808 107 ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF 143 (676)
Q Consensus 107 ~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~ 143 (676)
+++|.++..+|++++|+.+|+++++..|+ +.....+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 99999999999999999999999988875 3444333
No 122
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.63 E-value=7e-12 Score=136.15 Aligned_cols=223 Identities=9% Similarity=-0.025 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI-SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL 476 (676)
Q Consensus 398 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 476 (676)
.....+|++++...|.++..|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|+++.|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999997 99999999999999999999999999999999999999998
Q ss_pred hcC-----------CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccc-
Q 005808 477 EFE-----------PN-----------SADILHERGIVNFKFKDFNAAVEDLSACVKL-DKENKSAYTYLGLALSSIGE- 532 (676)
Q Consensus 477 ~~~-----------p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~- 532 (676)
... |. ...+|...+.+..+.|..+.|...|.++++. .+....+|...+.+....++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 752 43 3457888888888899999999999999987 44556777777777777654
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005808 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (676)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (676)
.+.|..+|+.+++..|+++..|...+......|+.+.|..+|++++...| ....+|......-...|+.+.+..+.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999887 356788888888899999999999999
Q ss_pred HhhcCCCCCHH
Q 005808 610 SGLGIDPSNIE 620 (676)
Q Consensus 610 ~al~~~p~~~~ 620 (676)
++.+..|+++.
T Consensus 566 R~~~~~P~~~~ 576 (679)
T 4e6h_A 566 RFFEKFPEVNK 576 (679)
T ss_dssp HHHHHSTTCCH
T ss_pred HHHHhCCCCcH
Confidence 99999988653
No 123
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.62 E-value=6e-14 Score=135.28 Aligned_cols=255 Identities=9% Similarity=-0.080 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 459 (676)
|+.++. .+..+..|+|..++.-.. +..|.+ ....+.+.+++..+|++.... . .+....+...++..+
T Consensus 14 ~~~lf~-ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 14 PMDYFN-IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL 81 (310)
T ss_dssp -CCTHH-HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh
Confidence 444443 456678899999998443 334433 456677788888888877421 1 112223444444443
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHH
Q 005808 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~ 537 (676)
. ++ |+..+++.+...+.....+..+|.++...|++++|++++.+.+..+| .+.+++..++.++...|+.+.|.
T Consensus 82 ~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 82 D--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp T--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred c--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 2 32 88999998887666677778999999999999999999999999887 78899999999999999999999
Q ss_pred HHHHHHHhcCcc----cHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHcCCHHHHHHH
Q 005808 538 EAHLKAIQLDRN----FLEAWGHL--TQFYQDLA--NSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKD 607 (676)
Q Consensus 538 ~~~~~al~~~p~----~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~ 607 (676)
+.++++.+.+|+ +..+...+ +++.+..| ++.+|...|+++....|+ .+..+++ ++.++|++++|...
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHH
Confidence 999999999883 23333444 54466666 999999999999888886 3334444 89999999999999
Q ss_pred HHHhhcC----------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 608 LSSGLGI----------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 608 ~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++-+.-
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 9988876 48899999999999999998 899999999999999988643
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.61 E-value=1.2e-16 Score=160.91 Aligned_cols=152 Identities=17% Similarity=0.199 Sum_probs=101.1
Q ss_pred HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 005808 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------------ADILHERGI 491 (676)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 491 (676)
..+++++|+..+++++...|....++..+|.++...|++++|+..|++++...|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666667777777777777777777777777777777766 456666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH-
Q 005808 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA- 570 (676)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A- 570 (676)
++...|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 005808 571 LECLQQVL 578 (676)
Q Consensus 571 ~~~~~~al 578 (676)
...|.+++
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 125
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.61 E-value=1.2e-14 Score=129.58 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc------------------c-CChhHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 005808 36 AITARIELAKLCSLRNWSKAIRILDSLLAQ------------------S-YEIQDICNRAFCYSQLELHKHVIRDCDKAL 96 (676)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~------------------~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al 96 (676)
+..-+.++..+|..|+|++|+.+|+++|++ + .+...|+|+|.||+++|+|++|+.+|++||
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344456778899999999999999999998 4 334569999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh-HHHHHHHHHHHHH
Q 005808 97 QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS-ADLKQFLELEELL 150 (676)
Q Consensus 97 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~-~~~~~~~~l~~~~ 150 (676)
+++|+++++|+++|.+|..+|++++|+..|+++++++|+.+ .....+..+....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 4444444444433
No 126
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=3.1e-14 Score=122.08 Aligned_cols=133 Identities=32% Similarity=0.448 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 598 (676)
++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
|++++|+..+++++...|.++.++..+|.++...|++++|..+++++++.+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 78888888887777777777777777888888888888888888888777775
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.60 E-value=7.5e-14 Score=119.65 Aligned_cols=133 Identities=31% Similarity=0.443 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 462 (676)
.++.+|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 005808 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 515 (676)
|++++|+..+++++...|.++.++..+|.++...|++++|...+++++..+|.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666666666655556666666666666666666666666555553
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.59 E-value=3.3e-15 Score=130.73 Aligned_cols=115 Identities=13% Similarity=0.043 Sum_probs=70.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005808 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (676)
Q Consensus 403 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 482 (676)
.|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45555555565566666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (676)
+.+++.+|.++...|++++|+..|+++++..|+++
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 66666666666666666666666666666555544
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.59 E-value=7.9e-15 Score=127.57 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=101.2
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (676)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788888888888888888888888999988888888888888888888888888889999999999999888888
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
++.+++.+|.++..+|++++|+.+|+++++++|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8888888999999999999999999998888887766543
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.1e-14 Score=156.35 Aligned_cols=205 Identities=16% Similarity=0.154 Sum_probs=144.3
Q ss_pred HcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808 393 NEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (676)
Q Consensus 393 ~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 461 (676)
..|.+ ++|+..+++++..+|++..+|..++.++...|+ +++++..+++++..+|++..+|...+.++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44444 577888888888888888888888888888877 7777777777777777777777777777777
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808 462 LG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (676)
Q Consensus 462 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (676)
.+ ++++++..++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++...+...++
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~-- 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS-- 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS--
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc--
Confidence 77 5567777777777777777667766666666666 666666666666666666666666666665554322100
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH------------HHH
Q 005808 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK------------AIK 606 (676)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~------------A~~ 606 (676)
.+.. -...+.++++++++.+++..+|++..+|+.++.++...+++++ |+.
T Consensus 198 --------~~~~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 259 (567)
T 1dce_A 198 --------GPQG----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSV 259 (567)
T ss_dssp --------SSCC----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEE
T ss_pred --------cccc----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEE
Confidence 0000 0002457888899999999999999999999999888888666 556
Q ss_pred HHHHhhcCCCC
Q 005808 607 DLSSGLGIDPS 617 (676)
Q Consensus 607 ~~~~al~~~p~ 617 (676)
.|.+++..+|.
T Consensus 260 ~f~~~i~~~~~ 270 (567)
T 1dce_A 260 CFSRPLTVGSR 270 (567)
T ss_dssp EEEEEECTTBT
T ss_pred Eeccceecccc
Confidence 67777777765
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=1.3e-14 Score=126.29 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=57.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 005808 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (676)
Q Consensus 404 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 483 (676)
|++++..+|++..+++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+++
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 34444444444555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (676)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (676)
.+++.+|.++...|++++|+..|++++...|+++
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 5555555555555555555555555555544443
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.56 E-value=9.8e-14 Score=129.95 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q 005808 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (676)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 564 (676)
.++.+|..+...|++++|+..+++++ .| ++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 45556666666666666666666653 22 4556666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCcCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808 565 ANSEKALECLQQVLYIDKRFS----------------KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 565 ~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (676)
|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++..|++
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 666666666666666555433 455555555555555555555555555555543
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.9e-14 Score=118.40 Aligned_cols=116 Identities=20% Similarity=0.152 Sum_probs=95.6
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (676)
Q Consensus 548 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (676)
|.....+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhccHHHHHHHHHHHHhhC------CCcHHHHHHHHHHH
Q 005808 628 CYHAIGEYREAIKDYDAALDLE------LDSMEKFVLQCLAF 663 (676)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~ 663 (676)
++..+|++++|+..|+++++++ |++..++..+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888888888 77777766666554
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=3.9e-13 Score=144.21 Aligned_cols=168 Identities=11% Similarity=0.078 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--
Q 005808 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-- 565 (676)
Q Consensus 498 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-- 565 (676)
..++|+..+.+++..+|++..+|...+.++...|+ +++++..+.++++.+|++..+|...+.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34677888888888899988888888888888888 899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh------------
Q 005808 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI------------ 632 (676)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------ 632 (676)
+++++++.+.++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 6799999999999999999999999999999999 899999999999999999999999999999885
Q ss_pred --ccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808 633 --GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 633 --g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (676)
+.+++|++++.+++.++|++..+|.+++.++.+
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 778999999999999999999999999888765
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.5e-13 Score=116.59 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 459 (676)
.+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHH
Q 005808 460 AALGESVEAIQDLSKALEFE------PNSADILHERGIVN 493 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 493 (676)
...|++++|+..|++++..+ |.+..++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 77777777777777777776 66666666665554
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.53 E-value=1e-13 Score=123.81 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=84.6
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (676)
Q Consensus 548 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (676)
+.....+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34466677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 005808 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (676)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 665 (676)
++..+|++++|+.+|+++++++|++..+++..++...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 77777777777777777777777777666666555444
No 137
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.53 E-value=7.2e-13 Score=127.77 Aligned_cols=227 Identities=9% Similarity=-0.039 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
....+.+.++++..|++.... . .+....+...++..+ .+. |+..+++.+...+.....+..+|.++.
T Consensus 45 ~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~--~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~ 111 (310)
T 3mv2_B 45 NTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL--DTK---NIEELENLLKDKQNSPYELYLLATAQA 111 (310)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH--TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh--ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345666778888888887421 1 112223444444443 232 888999888776666777789999999
Q ss_pred HcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcc-
Q 005808 461 ALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIG- 531 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g- 531 (676)
..|++++|+.++.+.+..+| .+.+++...+.++...|+.+.|.+.++++.+.+|+ .......-+++....|
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence 99999999999999999887 78899999999999999999999999999999883 2233333355566666
Q ss_pred -cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CcCcHHHHHHHHHHHHHcCC
Q 005808 532 -EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI----------DKRFSKAYHLRGLLLHGLGQ 600 (676)
Q Consensus 532 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~g~ 600 (676)
++.+|..+|+++.+..|+.......+. ++..+|++++|...++.+++. +|+++.++.+++.+....|+
T Consensus 192 ~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp STTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 999999999999998887322222222 899999999999999988776 48899999999999999998
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHH
Q 005808 601 HKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
+|.++++++.+..|+++.+.-
T Consensus 271 --~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 271 --DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp --TTHHHHHHHHHTTCCCHHHHH
T ss_pred --HHHHHHHHHHHhCCCChHHHH
Confidence 899999999999999987654
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.52 E-value=1.7e-14 Score=133.47 Aligned_cols=152 Identities=16% Similarity=0.098 Sum_probs=94.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH----------------HHHHHHH
Q 005808 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL----------------EAWGHLT 558 (676)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la 558 (676)
..|+++.+.+.+.......+.....+..+|.++...|++++|+..|++++...|.++ .++..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333334444445555555555555555555554444443 6778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHH
Q 005808 559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (676)
Q Consensus 559 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (676)
.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..++..++.++..+++..++
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888877776
Q ss_pred H-HHHHHHH
Q 005808 639 I-KDYDAAL 646 (676)
Q Consensus 639 ~-~~~~~al 646 (676)
. ..|.+.+
T Consensus 176 ~~~~~~~~f 184 (198)
T 2fbn_A 176 DKLTFGGMF 184 (198)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 6 4444443
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.52 E-value=4.9e-13 Score=119.44 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q 005808 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (676)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (676)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+.+++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHHhccHHHHHHHHHHHHhh
Q 005808 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRA--SCYHAIGEYREAIKDYDAALDL 648 (676)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~ 648 (676)
..|++++|+.+|++++..+|++..++..++ ..+...|++++|+..+.++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888888888888888888888887774444 4477888899998888877654
No 140
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.52 E-value=4.5e-13 Score=125.37 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
...++.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4467888999999999999999999885 33 68899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 005808 461 ALGESVEAIQDLSKALEFEPNSA----------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (676)
..|++++|+..|++++...|.+. .+++.+|.++...|++++|+..+++++...|++
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999999887765 888888999999999999999999988888876
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.52 E-value=6.5e-14 Score=126.93 Aligned_cols=126 Identities=16% Similarity=0.166 Sum_probs=70.6
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHcCCH--HHH
Q 005808 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANS--EKA 570 (676)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~A 570 (676)
...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3445555566666666655565555555566666666666666666666555555555555555555 4555555 555
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 005808 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (676)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (676)
+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|++.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 5555555555555555555555555555555555555555555555543
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.52 E-value=4.9e-13 Score=132.11 Aligned_cols=163 Identities=12% Similarity=0.068 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHH
Q 005808 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAW 554 (676)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 554 (676)
...+..+...|++++|+..+.+++...+... ..++.+|.++...|++++|+..+++++...+.. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444445555555555555555555444332 123345555556666666666666666543222 4466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH---hcCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHH
Q 005808 555 GHLTQFYQDLANSEKALECLQQVL---YIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIEC 621 (676)
Q Consensus 555 ~~la~~~~~~~~~~~A~~~~~~al---~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~ 621 (676)
..+|.+|...|++++|+.+|++++ +..|++ ..++.++|.+|...|++++|+.++++++...++ ...+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 666666666666666666666666 233332 146667777777777777777777777655322 1566
Q ss_pred HHHHHHHHHHhccHHHH-HHHHHHHHhhC
Q 005808 622 LYLRASCYHAIGEYREA-IKDYDAALDLE 649 (676)
Q Consensus 622 ~~~la~~~~~~g~~~~A-~~~~~~al~~~ 649 (676)
++.+|.+|..+|++++| ..+|++++.+.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 77777777777777777 66677776543
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.52 E-value=6.5e-13 Score=118.63 Aligned_cols=131 Identities=19% Similarity=0.179 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++..+|.+..++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHER--GIVNFKFKDFNAAVEDLSACVK 511 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~ 511 (676)
..|++++|+.+|++++..+|.+..++..+ +..+...|++++|+..+.++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777777777766665333 3335566666666666665543
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.51 E-value=1.3e-13 Score=124.92 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=114.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HH
Q 005808 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA-RAALGES--VE 467 (676)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~ 467 (676)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|++..++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999 7889998 99
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005808 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (676)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 520 (676)
|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999998875443
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.51 E-value=1.4e-12 Score=128.85 Aligned_cols=163 Identities=9% Similarity=0.002 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HH
Q 005808 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------AD 484 (676)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 484 (676)
.+...+..+...|++++|+..+.+++...+... ..+..+|.++...|++++|+..+++++...+.. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334444455555555555555555555444322 123334555555555555555555555443222 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cH
Q 005808 485 ILHERGIVNFKFKDFNAAVEDLSACV---KLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FL 551 (676)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~ 551 (676)
++..+|.+|...|++++|+.++++++ ...|++. .++.++|.++...|++++|+.++++++...+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 55555555555555555555555555 2233322 34555555555555555555555555554322 14
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 005808 552 EAWGHLTQFYQDLANSEKA-LECLQQVLY 579 (676)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A-~~~~~~al~ 579 (676)
.++..+|.+|...|++++| ..++++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4555555555555555555 444555543
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.50 E-value=3.8e-14 Score=131.16 Aligned_cols=142 Identities=24% Similarity=0.188 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHH
Q 005808 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----------------DILHERGI 491 (676)
Q Consensus 428 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~ 491 (676)
.|.++++.+.+.......+.....+..+|..+...|++++|+..|.+++...|.++ .++..+|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444444444444444444444444333 34444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Q 005808 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (676)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 569 (676)
++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|++++.++|++..++..++.++...++..+
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444444444444444443333
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=9.2e-13 Score=112.61 Aligned_cols=119 Identities=23% Similarity=0.327 Sum_probs=70.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005808 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (676)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (676)
.....+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34555555666666666666666666666665555555666666666666666666666666666656555556666666
Q ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Q 005808 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 565 (676)
+...|++++|+.++++++..+|.+..++..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666555555555555555555444
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=5.1e-13 Score=114.25 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=101.5
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH
Q 005808 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (676)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 455 (676)
..+..+..++.+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (676)
|.++...|++++|+.+|++++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888887776653
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=5.6e-13 Score=113.46 Aligned_cols=121 Identities=21% Similarity=0.341 Sum_probs=88.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 458 (676)
..+..++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+.+++...|++..++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 499 (676)
+...|++++|+.++++++...|.++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777666653
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=4.9e-13 Score=119.39 Aligned_cols=116 Identities=28% Similarity=0.330 Sum_probs=86.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (676)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 456 (676)
.+..+..++.+|..++..|+|++|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++.++|++..+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34456677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (676)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (676)
.++...|++++|+.+|++++.++|++...+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 777777777777777777777777776655554443
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.48 E-value=7.9e-13 Score=130.59 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=79.4
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CcCcHHHHH
Q 005808 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYH 589 (676)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~ 589 (676)
+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.+|+++++. .+....++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 4444444455555555555555432211 234556666666666666666666666531 122345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC
Q 005808 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGE-YREAIKDYDAALDLE 649 (676)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 649 (676)
++|.+|...|++++|+.++++++++.+.. ..+++.+|.+|..+|+ +++|+.+|++++.+.
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 77777777777777777777777654322 6788888888888884 688888888887653
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.47 E-value=6.2e-13 Score=113.21 Aligned_cols=119 Identities=24% Similarity=0.303 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (676)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (676)
++.++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555556666666666666666666666666655555556666666666666666666666655555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (676)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (676)
...|++++|+..+++++...|++..++..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555544
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.46 E-value=2.3e-12 Score=127.23 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=116.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 005808 455 RGQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTY 522 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~ 522 (676)
.+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+..+++++...+.. ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355566667777777777777666555443 23346777777778888888888887754332 235777
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc------HHHHH
Q 005808 523 LGLALSSIGEYKKAEEAHLKAIQL-------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYH 589 (676)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~ 589 (676)
+|.+|...|++++|+.+|+++++. .+....++.++|.+|..+|++++|+.+++++++..+.. +.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888888742 23335678888888888899999998888888765432 67888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHhhcC
Q 005808 590 LRGLLLHGLG-QHKKAIKDLSSGLGI 614 (676)
Q Consensus 590 ~la~~~~~~g-~~~~A~~~~~~al~~ 614 (676)
.+|.++...| .+++|+.+|++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 468999999888764
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=5.5e-13 Score=111.97 Aligned_cols=103 Identities=18% Similarity=0.037 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 005808 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (676)
Q Consensus 552 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (676)
..++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHhhCCCcHH
Q 005808 632 IGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 632 ~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
.|++++|+..|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999887653
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.45 E-value=6e-13 Score=112.88 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-------HHHH
Q 005808 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IECL 622 (676)
Q Consensus 550 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 622 (676)
...++..+|..++..|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++ ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345666777777777777777777777777777777777777777777777777777777777766554 2467
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 623 YLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 623 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
..+|.++..+|++++|+.+|++++...|+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 778888888888888888888888887753
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.44 E-value=1e-13 Score=145.75 Aligned_cols=161 Identities=22% Similarity=0.211 Sum_probs=110.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (676)
.++++++|+..++.++...|.....+..+|..++..|++++|+..|++++...|.+.... .+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~------ 307 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS------------EK------ 307 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HH------
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC------------hH------
Confidence 456677788888777777777788888888888888888888888888888877763200 00
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH
Q 005808 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (676)
Q Consensus 541 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (676)
...+..+....++.++|.+|..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 308 -~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 308 -ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 0011222335666777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhccHHHHHH
Q 005808 621 CLYLRASCYHAIGEYREAIK 640 (676)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~ 640 (676)
++..++.++..+|++++|..
T Consensus 387 a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766653
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.44 E-value=5.5e-13 Score=114.53 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-------c-----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------
Q 005808 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKR-------F-----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI------ 614 (676)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 614 (676)
.+...|..++..|++++|+..|+++++.+|+ + ..+|.++|.++..+|+|++|+..|++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555555555555555555555555554 2 337777788888888888888887777777
Q ss_pred -CCCCHHHH----HHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHH
Q 005808 615 -DPSNIECL----YLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (676)
Q Consensus 615 -~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 656 (676)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 99888888 9999999999999999999999999988876543
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.43 E-value=6.3e-12 Score=105.82 Aligned_cols=109 Identities=32% Similarity=0.451 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (676)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 462 (676)
.++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 33333333333444444444444433333333333333333333333333333333333333333333333333333333
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005808 463 GESVEAIQDLSKALEFEPNSADILHERGI 491 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (676)
|++++|+.++++++...|.++.++..++.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33333333333333333333333333333
No 159
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.43 E-value=4.5e-12 Score=106.75 Aligned_cols=113 Identities=29% Similarity=0.377 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (676)
...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808 631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (676)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (676)
..|++++|..+|+++++.+|++..++..++.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 444555555555544444444444444444443
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=1.2e-12 Score=109.90 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 461 (676)
..++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHH
Q 005808 462 LGESVEAIQDLSKALEFEPNSAD 484 (676)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~ 484 (676)
.|++++|+..++++++.+|.+..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999887643
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.43 E-value=3.1e-12 Score=110.17 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (676)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (676)
++..++.+|.+++..|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhcCCHHHHHHHHHHHHHhCC
Q 005808 494 FKFKDFNAAVEDLSACVKLDK 514 (676)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~ 514 (676)
...|++++|+..+++++...|
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHCh
Confidence 444444444444444444333
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.43 E-value=2.2e-12 Score=111.12 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=52.9
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 005808 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (676)
Q Consensus 548 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (676)
|.++..+..+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhccHHHHHHHHHHHHhhCCC
Q 005808 628 CYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
++..+|++++|+..|+++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555444
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=7.5e-12 Score=104.19 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56677777777777788888888877777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (676)
..|++++|+..+++++..+|.++.++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777777777777777777777777777666553
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.42 E-value=1.4e-13 Score=144.63 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=94.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHH
Q 005808 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---------------GEAWKRRGQA 458 (676)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~ 458 (676)
.+++++|+..|+.++...|..+.++..+|.+++..|++++|+..|.+++.+.|.+ ..++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3456667767777777777777777777888877888888888888877777766 4566666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (676)
+..+|++++|+..|++++.++|+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666655554
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=4.9e-12 Score=105.34 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (676)
+..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808 631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (676)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (676)
..|++++|..+|+++++.+|+++.++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666666665554443
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.40 E-value=2.9e-12 Score=114.05 Aligned_cols=114 Identities=21% Similarity=0.150 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQL------------------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (676)
.+...|..++..|++++|+..|.+++.. .|....++.++|.++...|++++|+..+++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555555555555555555544 3444445555555555555555555555555555
Q ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHHh
Q 005808 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAI 632 (676)
Q Consensus 581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~ 632 (676)
+|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555544 3344444444333
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.40 E-value=6.9e-13 Score=113.63 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=88.0
Q ss_pred cCCHHHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCH----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 005808 49 LRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELH----------KHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (676)
Q Consensus 49 ~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~ 117 (676)
.+.|++|+.+|.++++++ .++..+.++|.++..+|++ ++|+..|++||+++|++..+|+.+|.+|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 346789999999999999 5667799999999999886 49999999999999999999999999999985
Q ss_pred -----------CHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 005808 118 -----------RKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (676)
Q Consensus 118 -----------~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~ 151 (676)
++++|+.+|++|++++|+.+...+. +++-+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a-l~~~~ka~ 138 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS-LEMTAKAP 138 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHTHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHhCH
Confidence 8999999999999999998755443 34444333
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.40 E-value=3.9e-12 Score=117.80 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=107.8
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHcCCH
Q 005808 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ------LDRNFLEAWGHLTQFYQDLANS 567 (676)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~~ 567 (676)
+..|++++|...++......+....++..+|.++...|++++|+.++++++. ..+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 3456666666644443332224456667777777777777777777777776 3344566777788888888888
Q ss_pred HHHHHHHHHHHhc---Cc----CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC----HHHHHHHHHHHHHhcc
Q 005808 568 EKALECLQQVLYI---DK----RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SN----IECLYLRASCYHAIGE 634 (676)
Q Consensus 568 ~~A~~~~~~al~~---~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~ 634 (676)
++|+..+.+++.. .+ ....++..+|.++...|++++|+.++++++...+ .+ ..++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888877766 22 2245677788888888888888888888875422 11 2456788888889999
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 005808 635 YREAIKDYDAALDLELDS 652 (676)
Q Consensus 635 ~~~A~~~~~~al~~~p~~ 652 (676)
+++|..++++++++....
T Consensus 163 ~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999998888875543
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=4.9e-11 Score=124.96 Aligned_cols=200 Identities=9% Similarity=0.014 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----------------EALIGRGTARAFQRELEAAISDFTEAIQ 443 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (676)
|...+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788899999999999999999999999887642 4688999999999999999999999988
Q ss_pred hCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808 444 SNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (676)
Q Consensus 444 ~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (676)
..+... .+...++.++...|+++.|+.++++++...+ ....++..+|.++...|++++|+..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 655432 3455678888888999999999999986532 2366889999999999999999999999887
Q ss_pred hC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 512 LD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVL 578 (676)
Q Consensus 512 ~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al 578 (676)
.. +....++..+|.++...|++++|..++++++...+.. ...+..+|.++...|++.+|..+|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 52 3335789999999999999999999999998764321 4567788999999999999999999998
Q ss_pred hc
Q 005808 579 YI 580 (676)
Q Consensus 579 ~~ 580 (676)
..
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-11 Score=108.02 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=88.9
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 005808 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (676)
Q Consensus 547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (676)
.|.....+..+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 45566777777777777777777777777777777766 677777888888888888888888888888887788888
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (676)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (676)
.+|.++..+|++++|+.+|+++++++|++..++..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 888888888888888888888888888877766555443
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.38 E-value=1.1e-11 Score=105.36 Aligned_cols=112 Identities=20% Similarity=0.228 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 005808 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR 455 (676)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l 455 (676)
..++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3456777777777777777777777777777776 677777777777777777777777777777777 6777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (676)
|.++...|++++|+..|++++...|+++.+......+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 77777777777777777777777777766555444443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.4e-11 Score=107.49 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=105.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (676)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 453 (676)
.+..+..++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|++..++.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 45668889999999999999999999999999999987 788899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 005808 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (676)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (676)
.+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999888888877776543
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.37 E-value=1e-11 Score=114.95 Aligned_cols=24 Identities=17% Similarity=0.003 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 555 GHLTQFYQDLANSEKALECLQQVL 578 (676)
Q Consensus 555 ~~la~~~~~~~~~~~A~~~~~~al 578 (676)
..+|.++...|++++|+..+++++
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 444444444444444444444444
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.35 E-value=1.1e-12 Score=132.08 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=101.9
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Q 005808 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (676)
Q Consensus 477 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 556 (676)
...+.....+..+|..++..|++++|+..|++++...|.+. .+...+++.++...+. ..++.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~n 235 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLN 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHH
Confidence 33345567889999999999999999999999999988754 1234555555554432 247899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHHhccH
Q 005808 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC-YHAIGEY 635 (676)
Q Consensus 557 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~ 635 (676)
+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+..
T Consensus 236 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 4556778
Q ss_pred HHHHHHHHHHHhhCCCcHH
Q 005808 636 REAIKDYDAALDLELDSME 654 (676)
Q Consensus 636 ~~A~~~~~~al~~~p~~~~ 654 (676)
+++...|.+++...|+++.
T Consensus 316 ~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHhhCCCCCCCC
Confidence 8999999999999998764
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.34 E-value=2.9e-12 Score=106.98 Aligned_cols=92 Identities=11% Similarity=0.036 Sum_probs=81.6
Q ss_pred hcCCHHHHHHHHHHHHcc---c-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 005808 48 SLRNWSKAIRILDSLLAQ---S-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (676)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~---~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~ 123 (676)
..|+|++|+.+|.+++++ + .+...+.++|.++..+|+|++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368999999999999999 4 445569999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHH
Q 005808 124 SVWEKGYEHALHQSAD 139 (676)
Q Consensus 124 ~~~~~al~~~~~~~~~ 139 (676)
..|+++++..|+.+..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9999999999988654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.34 E-value=2.4e-11 Score=103.20 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 005808 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERG 490 (676)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 490 (676)
+++.+|.+++..|++++|+..|++++...|++. .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 456667777777777777777777777776665 566677777777777777777777777777766 66677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (676)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (676)
.++...|++++|+..+++++...|++..+......+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7777777777777777777777776665554444433
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.33 E-value=4.3e-12 Score=104.62 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=72.8
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CHHHHHH
Q 005808 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--NIECLYL 624 (676)
Q Consensus 547 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 624 (676)
+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 35555666666666666666666766666666666666666667777777777777777777777776666 6677777
Q ss_pred HHHHHHHh-ccHHHHHHHHHHHHhhCCCc
Q 005808 625 RASCYHAI-GEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 625 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 652 (676)
+|.++... |++++|+.++++++...|++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777777 77777777777777666654
No 178
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.33 E-value=5.3e-09 Score=110.34 Aligned_cols=205 Identities=10% Similarity=-0.064 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 005808 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV-- 510 (676)
Q Consensus 433 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-- 510 (676)
.....|++++...|..+..|...+..+...|+.+.|...|++++.. |.+...+...+... ..+ +....+....
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~ 271 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC-
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHh
Confidence 3445556666655666666666666655566666666666666655 55544444333321 111 0001111110
Q ss_pred --------HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Q 005808 511 --------KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-NSEKALECLQQVLYID 581 (676)
Q Consensus 511 --------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~ 581 (676)
...+....+|...+......++.+.|...|.++ ...+....+|...+.+....+ +.+.|..+|+.+++..
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 001112356777788877888899999999999 433335667777777766666 5999999999999988
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
|+.+..+...+......|+.+.|...|+++. .....|......-...|+.+.+...+++++.
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9888888888888889999999999999983 4578888888888888999999998998885
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.31 E-value=1.2e-11 Score=101.78 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Q 005808 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERG 490 (676)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 490 (676)
+++.++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|. +..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444444444444444444444 444444444
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHhCC
Q 005808 491 IVNFKF-KDFNAAVEDLSACVKLDK 514 (676)
Q Consensus 491 ~~~~~~-~~~~~A~~~~~~al~~~~ 514 (676)
.++... |++++|++.+++++...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 444444 444444444444444333
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.31 E-value=1.7e-11 Score=104.13 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-------HHHHHHHH
Q 005808 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IECLYLRA 626 (676)
Q Consensus 554 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la 626 (676)
+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|++ +.+++.+|
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 33333333333444444444444333333333333344444444444444444444443333332 33444444
Q ss_pred HHHHHhccHHHHHHHHHHHHhhCC
Q 005808 627 SCYHAIGEYREAIKDYDAALDLEL 650 (676)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~~~p 650 (676)
.++...|++++|+.+|+++++..|
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC
Confidence 444444444444444444444443
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.31 E-value=4.2e-13 Score=141.57 Aligned_cols=123 Identities=18% Similarity=0.230 Sum_probs=70.9
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCC
Q 005808 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (676)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 600 (676)
..+|.++...|++++|+..|+++++.+|.+..++..+|.++..+|++++|+..++++++.+|+++.++..+|.++..+|+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33455555555666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHH--HHHhccHHHHHHHHH
Q 005808 601 HKKAIKDLSSGLGIDPSNIECLYLRASC--YHAIGEYREAIKDYD 643 (676)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 643 (676)
+++|+..|+++++.+|++..++..++.+ +...|++++|+..++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666666666666655555555555 555566666666666
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.31 E-value=2.4e-13 Score=143.44 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Q 005808 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (676)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 564 (676)
.+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|+++.++..+|.+|..+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCcCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HhhcCCCC
Q 005808 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLL--LHGLGQHKKAIKDLS-----------SGLGIDPS 617 (676)
Q Consensus 565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~ 617 (676)
|++++|+..|+++++.+|++..++..++.+ +...|++++|+..++ +++...|+
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 777777777777777777777777777766 677777777777777 66666554
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.30 E-value=2.2e-11 Score=103.47 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-------HHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAWK 453 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~ 453 (676)
+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45566667777777777777777777777777666666777777777777777777777766665554 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005808 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (676)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (676)
.+|.++...|++++|+.+|++++...| ++..+..++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 666666666666666666666666665 455555555444
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.30 E-value=8.4e-12 Score=106.87 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=69.5
Q ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (676)
+.+.+++|+..++++++++|+++.+|+++|.++...++++.+...+. .+++|+..|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~------------------------~~~eAi~~l 69 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ------------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH------------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh------------------------HHHHHHHHH
Confidence 45566667777777777777777777767766666665542222111 145666666
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808 609 SSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDAALDLELDSMEKFVLQ 659 (676)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (676)
+++++++|++..+|+++|.+|..+ |++++|+.+|++|++++|++...+..+
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 666666666666666666666665 478888888888888888877654443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.29 E-value=3.9e-11 Score=121.89 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 005808 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (676)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 562 (676)
...+..+|..++..|++++|+..|+++++..+... +...........|.+..++.++|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888887643321 111234445577888889999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 005808 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641 (676)
Q Consensus 563 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 641 (676)
.+|++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++..+++++++.+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888877653
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.29 E-value=4e-12 Score=127.92 Aligned_cols=154 Identities=15% Similarity=0.072 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
+..+..+|..++..|+|++|+..|++++...|.+. .+...|++.++...+. ..++.++|.++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 67788999999999999999999999999998754 1234455555544332 136778888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcccHHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEA 539 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~ 539 (676)
.+|++++|+.+|++++..+|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.+ ....+..+++...
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888877 4445667778888
Q ss_pred HHHHHhcCcccH
Q 005808 540 HLKAIQLDRNFL 551 (676)
Q Consensus 540 ~~~al~~~p~~~ 551 (676)
|.+++...|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 888888877764
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1e-10 Score=122.45 Aligned_cols=200 Identities=11% Similarity=0.058 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----------------EAWKRRGQARAALGESVEAIQDLSKALE 477 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (676)
|.+....|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|+.++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567778889999999999999999999887642 3688899999999999999999999987
Q ss_pred cCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 005808 478 FEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (676)
Q Consensus 478 ~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (676)
..+... .+...++.++...|+++.|+.++++++...+ ....++..+|.++...|++.+|...+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 655432 3566788888899999999999999987632 2357888999999999999999999999886
Q ss_pred c------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 005808 546 L------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RF----SKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (676)
Q Consensus 546 ~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (676)
. .+....++..++.+|...|++++|...+++++...+ .. ...+..+|.++...|++.+|..+|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5 344478899999999999999999999999987643 11 3567788999999999999999999887
Q ss_pred cC
Q 005808 613 GI 614 (676)
Q Consensus 613 ~~ 614 (676)
..
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.27 E-value=9.8e-12 Score=103.70 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHHhc---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 005808 564 LANSEKALECLQQVLYI---DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640 (676)
Q Consensus 564 ~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 640 (676)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777777 477777777888888888888888888888888888778888888888888888888888
Q ss_pred HHHHHHhhCCCcHHHH
Q 005808 641 DYDAALDLELDSMEKF 656 (676)
Q Consensus 641 ~~~~al~~~p~~~~~~ 656 (676)
.|+++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888877777654
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=5.3e-11 Score=105.34 Aligned_cols=133 Identities=21% Similarity=0.264 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------cHH
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSK 586 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~ 586 (676)
++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+..+++++...+. ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 44555555556666666666666555554332 245666666666677777777777666655432 145
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
++..+|.++...|++++|+.++++++...+ ....++..+|.++...|++++|..++++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777775522 12456778888888888888888888888876544
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.25 E-value=7.8e-11 Score=119.69 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
+..+..+|..++..|+|++|+..|+++++..+..+ ............|....++.++|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888888888887433211 011123333345556666777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (676)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (676)
.+|++++|+.+++++++.+|+++.+++.+|.+|...|++++|+..++++++++|++..++..++.++...++++++..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777766666665543
No 191
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=2.2e-08 Score=105.67 Aligned_cols=276 Identities=9% Similarity=-0.040 Sum_probs=138.0
Q ss_pred HHhhHHHHHHhhccCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HcccHHHH
Q 005808 363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGK-YASAISIFDQILKE---DPMYPEALIGRGTARA----FQRELEAA 434 (676)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~----~~g~~~~A 434 (676)
.......+.+.....| +++.|..........++ .+.....|+.++.. +|.+...|...+..+. ..|+.+.+
T Consensus 30 ~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 30 YRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 3334445555555555 67777777666666553 35566677777764 5666777777666543 34677788
Q ss_pred HHHHHHHHHhCCCcHH-HHHHHHHH----------------------------------------------HHHcCC---
Q 005808 435 ISDFTEAIQSNPSAGE-AWKRRGQA----------------------------------------------RAALGE--- 464 (676)
Q Consensus 435 ~~~~~~al~~~~~~~~-~~~~la~~----------------------------------------------~~~~g~--- 464 (676)
...|++++...+.... .|...... -...++
T Consensus 109 R~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~ 188 (493)
T 2uy1_A 109 RNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK 188 (493)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc
Confidence 8888888875333221 11111100 001111
Q ss_pred ------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Q 005808 465 ------SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (676)
Q Consensus 465 ------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (676)
.......|++++...|..+.+|...+..+...|+.+.|...+++++.. |.+...+...+... ..++ ...
T Consensus 189 ~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~ 263 (493)
T 2uy1_A 189 LGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYG 263 (493)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHH
Confidence 122334555555555555555555555555555555555555555555 55544443332221 0000 000
Q ss_pred HHHHHHh----------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC-CHHHHHHH
Q 005808 539 AHLKAIQ----------LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKD 607 (676)
Q Consensus 539 ~~~~al~----------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~ 607 (676)
.+..... ..+....+|...+....+.+..+.|...|.++ ...+.....|...|.+....+ +++.|...
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 0000000 00111234455555555555566666666666 322223344544454444444 46666666
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005808 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (676)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (676)
|+.+++..|+++..+...+......|+.+.|...|+++
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666655555555556666666666665554
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.18 E-value=1.8e-10 Score=101.89 Aligned_cols=96 Identities=29% Similarity=0.337 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc------CcHH
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSK 586 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~ 586 (676)
++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444555555555555555555544443221 34455555555556666666666555554321 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
++..+|.++...|++++|+.+++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5566666666666666666666666554
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.07 E-value=2.2e-09 Score=88.83 Aligned_cols=84 Identities=23% Similarity=0.303 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHccc-CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005808 53 SKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (676)
Q Consensus 53 ~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 131 (676)
..|+..|.++++.+ .++..++++|.++..+|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36899999999999 56667999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccCC
Q 005808 132 HALHQ 136 (676)
Q Consensus 132 ~~~~~ 136 (676)
+.|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 87743
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=2e-10 Score=94.48 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHH
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYL 624 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 624 (676)
...+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777776 667777
Q ss_pred HHHHHHHhccHHHHHHHHH
Q 005808 625 RASCYHAIGEYREAIKDYD 643 (676)
Q Consensus 625 la~~~~~~g~~~~A~~~~~ 643 (676)
+|.++..+|+++.|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 7777777776666655444
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.2e-10 Score=94.12 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR 454 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~ 454 (676)
+..++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777777777777777777777777777777776 666677
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 005808 455 RGQARAALGESVEAIQDLS 473 (676)
Q Consensus 455 la~~~~~~g~~~~A~~~~~ 473 (676)
+|.++...|+++.|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 7777776666665555443
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.00 E-value=3.7e-09 Score=87.50 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred C
Q 005808 650 L 650 (676)
Q Consensus 650 p 650 (676)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.99 E-value=4e-09 Score=82.87 Aligned_cols=78 Identities=29% Similarity=0.348 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 005808 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (676)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 663 (676)
.++..+|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+.+|+++++++|++..++..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444444444444444443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.98 E-value=5.8e-09 Score=81.89 Aligned_cols=83 Identities=28% Similarity=0.382 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 459 (676)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35566666666666777777777777777666666666666666666666666676666666666666666666666666
Q ss_pred HHc
Q 005808 460 AAL 462 (676)
Q Consensus 460 ~~~ 462 (676)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.92 E-value=4e-09 Score=84.71 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 005808 67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (676)
Q Consensus 67 ~~~~~~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~ 135 (676)
.++..++++|.+++.+|+|++|+..++++++++|+++.+++.+|.+|..+|++++|+..|++++++.|.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 456679999999999999999999999999999999999999999999999999999999999877654
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.87 E-value=4.5e-09 Score=84.40 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=44.8
Q ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+..|++++++.|..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 455666666666666666666666666666666666666666666666666666666666666666665543
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.86 E-value=4.9e-09 Score=84.03 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhc
Q 005808 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSK-AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (676)
Q Consensus 555 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (676)
+..|.++...|++++|+..++++++.+|.++. +++.+|.++...|++++|+..|+++++.+|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34566666666667777777666666666666 66667777777777777777777777666666655533 5
Q ss_pred cHHHHHHHHHHHHhhCCCc
Q 005808 634 EYREAIKDYDAALDLELDS 652 (676)
Q Consensus 634 ~~~~A~~~~~~al~~~p~~ 652 (676)
.+.+++..|+++...+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5666666666666666654
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.83 E-value=6.7e-08 Score=82.66 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHH
Q 005808 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIK 606 (676)
Q Consensus 531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 606 (676)
+++++|+.+|+++.+...... . +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 356666666666666543322 2 666666666666677777776654 456667777777766 667777777
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhC
Q 005808 607 DLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLE 649 (676)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 649 (676)
+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777665 456677777777777 677777777777777653
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.83 E-value=4.2e-08 Score=96.16 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=111.3
Q ss_pred HHHhcCCCCHHHH--HHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Q 005808 474 KALEFEPNSADIL--HERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (676)
Q Consensus 474 ~al~~~p~~~~~~--~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 548 (676)
++....|.++.+| +..|..+...+ ...+|+.+|+++++++|++..++..++.++... ... .|
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-----------~~~--~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-----------HSQ--HP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------HHH--SC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------hcc--CC
Confidence 4445566665543 34455555544 357888888888888888888888877777611 000 11
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 005808 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (676)
Q Consensus 549 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (676)
........ ...+.... .++...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.+
T Consensus 252 ~~~~~~~~----------l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~ 319 (372)
T 3ly7_A 252 LDEKQLAA----------LNTEIDNI-VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKV 319 (372)
T ss_dssp CCHHHHHH----------HHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred CchhhHHH----------HHHHHHHH-HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 11110000 11222211 233567888889999988888889999999999999999875 7788889999
Q ss_pred HHHhccHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 005808 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (676)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 662 (676)
+...|++++|++.|++|+.++|..+..++...++
T Consensus 320 ~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~ 353 (372)
T 3ly7_A 320 YEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353 (372)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSS
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCce
Confidence 9999999999999999999999886544433333
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.83 E-value=6.8e-09 Score=83.16 Aligned_cols=89 Identities=18% Similarity=0.264 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPE-ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 463 (676)
+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++..+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777778888888888888887887777 77778888888888888888888888777777766533 4
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 005808 464 ESVEAIQDLSKALEFEPN 481 (676)
Q Consensus 464 ~~~~A~~~~~~al~~~p~ 481 (676)
.+.+++..|+++...+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 455566666665555443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.80 E-value=9.1e-08 Score=81.84 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHH
Q 005808 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECL 574 (676)
Q Consensus 499 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~ 574 (676)
+++|+.+|+++.+...... . +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|
T Consensus 11 ~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4444444444444432221 1 444444444444444444444443 334444445554444 44555555555
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcC
Q 005808 575 QQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 614 (676)
+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555443 334455555555555 45555555555555444
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.78 E-value=3e-07 Score=86.15 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=60.4
Q ss_pred hCCCCHHHHHHHHHHHHH---c--c------cHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHc-----CCHHHHHHH
Q 005808 512 LDKENKSAYTYLGLALSS---I--G------EYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDL-----ANSEKALEC 573 (676)
Q Consensus 512 ~~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~ 573 (676)
.+|++++.+++.|.+... . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 355666666555554432 1 1 244556666666666666 344666666666653 666666666
Q ss_pred HHHHHhcCcCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCC
Q 005808 574 LQQVLYIDKRF-SKAYHLRGLLLHG-LGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 574 ~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~ 617 (676)
|+++++++|+. ...++.+|..+.. .|++++|..++++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 66666666643 5666666666555 36666666666666665544
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.77 E-value=5.5e-08 Score=101.58 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=71.3
Q ss_pred HcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCcHHHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRG 592 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la 592 (676)
.+|++++|+..+++++++ +|.....+.++|.+|..+|+|++|+.++++++.. .|+....+.++|
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 444444554444444433 1222445555666666666666666666665543 223334566677
Q ss_pred HHHHHcCCHHHHHHHHHHhhcC-----CCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 593 LLLHGLGQHKKAIKDLSSGLGI-----DPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
.+|..+|++++|+..|++++.+ .|+++ +....++.++..+|.+++|...|.++.+..
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776653 44544 445667777777777777777777776543
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.76 E-value=2.7e-07 Score=90.52 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 456 (676)
.+..++.+|..++..++ +.+|+.+|+++++.+|+++.++..++.++.....+ .|........
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~~~~~~~~~-- 259 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HPLDEKQLAA-- 259 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SCCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CCCchhhHHH--
Confidence 34456677777776654 47888888888888888888888877777621110 0111100000
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Q 005808 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (676)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 536 (676)
...+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|
T Consensus 260 --------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 260 --------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp --------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred --------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 0111110 1122344555555555555555556666666666666655543 44455555666666666666
Q ss_pred HHHHHHHHhcCcccH
Q 005808 537 EEAHLKAIQLDRNFL 551 (676)
Q Consensus 537 ~~~~~~al~~~p~~~ 551 (676)
++.|.+++.++|..+
T Consensus 330 ~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 330 ADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHSCSHH
T ss_pred HHHHHHHHhcCCCcC
Confidence 666666666655543
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.73 E-value=5.9e-07 Score=84.18 Aligned_cols=109 Identities=17% Similarity=0.035 Sum_probs=91.7
Q ss_pred HhcCCCCHHHHHHHHHHHHh-----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----ccHHHHH
Q 005808 476 LEFEPNSADILHERGIVNFK-----FK------DFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSI-----GEYKKAE 537 (676)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~ 537 (676)
...+|++++.++..|.+... .| ....|...++++++++|+ +..+|..+|.+|... |+.++|.
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 34577888877776665532 12 357889999999999999 667999999999995 9999999
Q ss_pred HHHHHHHhcCccc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcCc
Q 005808 538 EAHLKAIQLDRNF-LEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRF 584 (676)
Q Consensus 538 ~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~ 584 (676)
.+|+++++++|+. ..+++.+|..+.. .|++++|..++++++...|..
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999975 9999999999988 499999999999999988763
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.65 E-value=1.6e-07 Score=98.10 Aligned_cols=120 Identities=10% Similarity=-0.034 Sum_probs=68.9
Q ss_pred HhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHH
Q 005808 494 FKFKDFNAAVEDLSACVKL-----DKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHL 557 (676)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 557 (676)
..+|+|++|+..+++++.+ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|.-...+.++
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445555555555554443 2222 234455555555555555555555555543 23334556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc-----CcCc---HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808 558 TQFYQDLANSEKALECLQQVLYI-----DKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (676)
Q Consensus 558 a~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (676)
|.+|..+|++++|+.++++++.+ .|++ ......++.++..++.+++|...|.++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766643 3333 34456677777777777777777776643
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=5.3e-07 Score=76.18 Aligned_cols=95 Identities=17% Similarity=0.022 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCC-C-CCHHHHHHHHHHHHHhccHHHHHHH
Q 005808 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGID-P-SNIECLYLRASCYHAIGEYREAIKD 641 (676)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 641 (676)
...+.+.|.+.+..++.+..+.+.+|+++.+.+ +.++++..++..++.+ | ++.++++.+|..+.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345566666666667777788888888888877 5568888888888777 6 4567888888888888888888888
Q ss_pred HHHHHhhCCCcHHHHHHHHH
Q 005808 642 YDAALDLELDSMEKFVLQCL 661 (676)
Q Consensus 642 ~~~al~~~p~~~~~~~~~~~ 661 (676)
++++++++|++..+......
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHH
Confidence 88888888888776554433
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.48 E-value=1.8e-06 Score=88.58 Aligned_cols=93 Identities=8% Similarity=-0.039 Sum_probs=78.4
Q ss_pred HhcCCHHHHHHHHHHHHccc-----CChhH----HHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CCC---hhHHHHH
Q 005808 47 CSLRNWSKAIRILDSLLAQS-----YEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLD-----PTL---LQAYILK 109 (676)
Q Consensus 47 ~~~~~y~~Ai~~y~~ai~~~-----~~~~~----~~~ra~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~~ 109 (676)
-..|+|++|+..|.+++++. +++.. +.|+|.+|..+|+|++|+..++++|++. |++ +..+..+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35689999999999998753 44444 7899999999999999999999999774 444 4489999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----ccCChHH
Q 005808 110 GCAFSALGRKEEALSVWEKGYEH-----ALHQSAD 139 (676)
Q Consensus 110 g~~~~~l~~~~~A~~~~~~al~~-----~~~~~~~ 139 (676)
|.+|..+|++++|+..|++|+++ .|++|..
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 99999999999999999999876 4565533
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.48 E-value=5.3e-07 Score=70.46 Aligned_cols=71 Identities=20% Similarity=0.125 Sum_probs=43.7
Q ss_pred CcCcHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 581 DKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 581 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
+|+++..+..+|.++...++ .++|...++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35556666666666654443 466666666666666666666666666666666666666666666666665
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.47 E-value=1.1e-06 Score=68.71 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 005808 412 PMYPEALIGRGTARAFQRE---LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480 (676)
Q Consensus 412 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 480 (676)
|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.++++++..+|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3334444444444433322 33444444444444444444444444444444444444444444444433
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.46 E-value=1.5e-06 Score=89.43 Aligned_cols=100 Identities=8% Similarity=0.020 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccc-----CChhH----HHHHHHHHHHhhCHHHHHHHHHHHHHhC-----CCChh--
Q 005808 41 IELAKLCSLRNWSKAIRILDSLLAQS-----YEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLD-----PTLLQ-- 104 (676)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~-----~~~~~----~~~ra~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-- 104 (676)
..+.++..+|+|++|+..|.+++++. +++.. +.|+|.+|..+|+|++|+..++++|++. |+++.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34567789999999999999999763 44443 7899999999999999999999999765 55544
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----ccCChHHH
Q 005808 105 -AYILKGCAFSALGRKEEALSVWEKGYEH-----ALHQSADL 140 (676)
Q Consensus 105 -a~~~~g~~~~~l~~~~~A~~~~~~al~~-----~~~~~~~~ 140 (676)
.++.+|.+|..+|++++|+..|++|+++ .|++|...
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 8999999999999999999999999876 56776553
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=3.2e-06 Score=71.43 Aligned_cols=85 Identities=11% Similarity=0.050 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 401 ISIFDQILKEDPMYPEALIGRGTARAFQR---ELEAAISDFTEAIQSN-P-SAGEAWKRRGQARAALGESVEAIQDLSKA 475 (676)
Q Consensus 401 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (676)
.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++..++.+++.+ | ...++++.+|..+++.|+|++|+.+++++
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33444444444444555555555555544 3445555555555544 3 23445555555555555555555555555
Q ss_pred HhcCCCCHHH
Q 005808 476 LEFEPNSADI 485 (676)
Q Consensus 476 l~~~p~~~~~ 485 (676)
++..|++..+
T Consensus 98 L~ieP~n~QA 107 (152)
T 1pc2_A 98 LQTEPQNNQA 107 (152)
T ss_dssp HHHCTTCHHH
T ss_pred HhcCCCCHHH
Confidence 5555544443
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.38 E-value=3e-06 Score=68.12 Aligned_cols=75 Identities=9% Similarity=-0.069 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHH
Q 005808 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGID-------PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658 (676)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 658 (676)
.-.+.+|..++..|+|..|+.+|+.+++.. +..+.++..+|.++.++|+++.|+.+++++++++|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 345566666666666666666666665532 2345666777777777777777777777777777777666444
Q ss_pred HH
Q 005808 659 QC 660 (676)
Q Consensus 659 ~~ 660 (676)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.33 E-value=5.7e-06 Score=66.43 Aligned_cols=78 Identities=15% Similarity=0.050 Sum_probs=59.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (676)
.++..++.+|..++..|+|..|+..|+.+++.. +..+.++..+|.+++..|+++.|+.++++++.+.|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 356777888888888888888888888888752 2346677778888888888888888888888888877777
Q ss_pred HHHHH
Q 005808 452 WKRRG 456 (676)
Q Consensus 452 ~~~la 456 (676)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 66655
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.29 E-value=0.00014 Score=76.48 Aligned_cols=114 Identities=11% Similarity=-0.015 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005808 533 YKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (676)
Q Consensus 533 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (676)
.++|...|+++.... +-+..+|..+...|.+.|+.++|..+|++..+.. ..+...|..+-..|.+.|+.++|..+|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444444331 1124444455555555555555555555444321 11244444555555555555555555555
Q ss_pred hhcC--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 611 GLGI--DPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 611 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
..+. .|+ ...|..+...+.+.|+.++|...+++..+
T Consensus 166 M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 166 MVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4432 222 44455555555555555555555555443
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.17 E-value=0.00019 Score=75.43 Aligned_cols=178 Identities=10% Similarity=0.046 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhcC-CCCHHH
Q 005808 417 ALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGE---------SVEAIQDLSKALEFE-PNSADI 485 (676)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~ 485 (676)
.+..+-..+.+.|+.++|+..|+++.... +-+...|..+..++...+. .+.|..+|+++.... +.+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 35555677788899999999999887753 2245556666666654443 678888888887653 236778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Q 005808 486 LHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQD 563 (676)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 563 (676)
|..+...|.+.|++++|..+++++.... ..+...|..+...+.+.|+.++|.+.++++.+.. .-+...|..+...+.+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 8888889999999999999998887653 3357778888888889999999999998887653 2246778888888999
Q ss_pred cCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHH
Q 005808 564 LANSEKALECLQQVLYI--DKRFSKAYHLRGLLL 595 (676)
Q Consensus 564 ~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~ 595 (676)
.|+.++|.+++++..+. .|+ ...+..+-..+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 99999999999887654 343 34444443333
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.13 E-value=1.3e-05 Score=82.26 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=49.9
Q ss_pred hcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHH
Q 005808 495 KFKDFNAAVEDLSACVKL-----DKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLT 558 (676)
Q Consensus 495 ~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la 558 (676)
..|+|++|+..+++++.+ .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|+-...++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456777777777777664 34443 34556666666666666666666666654 222344455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 005808 559 QFYQDLANSEKALECLQQVLY 579 (676)
Q Consensus 559 ~~~~~~~~~~~A~~~~~~al~ 579 (676)
.+|..+|++++|+.+|+++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 556556666666555555554
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.10 E-value=2e-05 Score=81.02 Aligned_cols=85 Identities=14% Similarity=0.008 Sum_probs=41.2
Q ss_pred HcccHHHHHHHHHHHHhc-----Ccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCcHHHHHHHH
Q 005808 529 SIGEYKKAEEAHLKAIQL-----DRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRG 592 (676)
Q Consensus 529 ~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la 592 (676)
..|++++|+..+++++++ .|+ ....+.++|.+|..+|+|++|+.++++++.. .|.....++++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 344455555555554433 112 2334455555555555555555555555432 122233455555
Q ss_pred HHHHHcCCHHHHHHHHHHhhc
Q 005808 593 LLLHGLGQHKKAIKDLSSGLG 613 (676)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~ 613 (676)
.+|..+|++++|+.+|+++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 555555555555555555554
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.06 E-value=4.9e-05 Score=61.66 Aligned_cols=96 Identities=16% Similarity=0.008 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHH---HHHHHHHhhcCC-C-CCHHHHHHHHHHHHHhccHHHHHHH
Q 005808 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK---AIKDLSSGLGID-P-SNIECLYLRASCYHAIGEYREAIKD 641 (676)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 641 (676)
...+...|.+....++....+.+.+|+++.+..+... ++..++..+... | ..-+.++.+|..++++|+|.+|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455566666666666778888888888888887766 888888888876 4 4557888899999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHH
Q 005808 642 YDAALDLELDSMEKFVLQCLA 662 (676)
Q Consensus 642 ~~~al~~~p~~~~~~~~~~~~ 662 (676)
++.+++..|++..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 999999999988876544443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.84 E-value=0.00037 Score=57.59 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 565 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (676)
++.++|.+.|+.++..+...+.+|...|..-.++|+...|.+.+.+++...|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44444444444444333333444444444444444444444444444444443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.81 E-value=0.00038 Score=56.44 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-c-CcHHHHHHHHHHHHHcCCHHHHHHH
Q 005808 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK---ALECLQQVLYID-K-RFSKAYHLRGLLLHGLGQHKKAIKD 607 (676)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~ 607 (676)
...+...|.+....++....+.+.+|+++....+... ++.+++..+... | ..-+..+.+|..+.+.|+|.+|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344444555555455556666666666665555444 666666665554 3 3445666666666666666666666
Q ss_pred HHHhhcCCCCCHHHHHHHHHH
Q 005808 608 LSSGLGIDPSNIECLYLRASC 628 (676)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~ 628 (676)
++..++..|++..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 666666666666555544433
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.77 E-value=0.00065 Score=56.18 Aligned_cols=108 Identities=14% Similarity=-0.015 Sum_probs=70.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808 478 FEPNSADILHERGIVNFKFKDF------NAAVEDLSACVKLDKEN--------KSAYTYLGLALSSIGEYKKAEEAHLKA 543 (676)
Q Consensus 478 ~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (676)
+.|++++.|..........|+. +.-++.|++++..-|.. ...|...+.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3566666666666666666666 56666666666655432 2344444543 4457777777777777
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHH
Q 005808 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586 (676)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 586 (676)
+......+.+|...|....++|+...|...+.+++...|....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 7776666777777777777788888888888888777776433
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.67 E-value=0.00035 Score=59.25 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=72.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccc-CChh---------HHHHHHHHHHHhhCHHHHHHHHHHHHHhC---CC-------
Q 005808 42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQ---------DICNRAFCYSQLELHKHVIRDCDKALQLD---PT------- 101 (676)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~---------~~~~ra~~~~~~g~~~~A~~~~~~al~~~---p~------- 101 (676)
...+++..|.|+.|+-..+.++... .++. .+...|.+++..|+|..|+..|++||+.. |+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 5567899999999999999987765 2222 46899999999999999999999997554 11
Q ss_pred ---------------ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 102 ---------------LLQAYILKGCAFSALGRKEEALSVWEKG 129 (676)
Q Consensus 102 ---------------~~~a~~~~g~~~~~l~~~~~A~~~~~~a 129 (676)
.++..|+++.||.+++++++|+..++.+
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 2268899999999999999999887765
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.55 E-value=0.00059 Score=57.89 Aligned_cols=134 Identities=12% Similarity=0.072 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC---Cc
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKED---PMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNP---SA 448 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~ 448 (676)
-..++.....++..|.|+.|+.....++... |+- ..++..+|.+++..|+|..|...|+++++... ..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456777888999999999999998877643 331 34789999999999999999999999986522 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (676)
......++. ...+.. ... .+.+.++.+.++.||...+++++|+..++.+-.. ...+.+...+|..|
T Consensus 100 ~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred CCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 111100100 000000 011 1335567777888888888888888777653222 23455666666554
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.39 E-value=0.0015 Score=53.10 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHHcCCH---HHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHHHH
Q 005808 584 FSKAYHLRGLLLHGLGQH---KKAIKDLSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (676)
Q Consensus 584 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 659 (676)
.+.+.+++|+++.+..+. .+++..++..++..|. .-+.++.+|..+.++|+|++|.++.+.++++.|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 356667777777766543 3566677776666663 346677777777777777777777777777777776665444
Q ss_pred HHH
Q 005808 660 CLA 662 (676)
Q Consensus 660 ~~~ 662 (676)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.24 E-value=0.0054 Score=50.46 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=62.3
Q ss_pred cCcHHHHHHHHHHHHHcCCH---HHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHHHHH
Q 005808 582 KRFSKAYHLRGLLLHGLGQH---KKAIKDLSSGLGIDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (676)
Q Consensus 582 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 657 (676)
.-.+.+.+++|+++.+..+. .+++..++..+...|. .-+.++.+|..+.++|+|.+|.++.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34577888888888887754 4678888888887774 4578888888888888888888888888888888887755
Q ss_pred HHHHH
Q 005808 658 LQCLA 662 (676)
Q Consensus 658 ~~~~~ 662 (676)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.06 E-value=0.012 Score=47.81 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=67.3
Q ss_pred cCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH
Q 005808 376 SKSISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (676)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 451 (676)
....+++..|..|+++....+. .+++.+++.+++.+|. .-+.++.+|..+++.|+|++|+.+.+.+++..|++..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4556788999999999887654 5688999999888884 47888999999999999999999999999999998776
Q ss_pred HHHHHHH
Q 005808 452 WKRRGQA 458 (676)
Q Consensus 452 ~~~la~~ 458 (676)
......+
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554433
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.90 E-value=0.013 Score=48.19 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=66.0
Q ss_pred CCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH
Q 005808 378 SISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (676)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 453 (676)
..+++..|..|+++....+. .+++.+++.++...|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 57788999999999887654 4788899999988884 4678899999999999999999999999999999877665
Q ss_pred HHHH
Q 005808 454 RRGQ 457 (676)
Q Consensus 454 ~la~ 457 (676)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.85 E-value=0.36 Score=51.54 Aligned_cols=124 Identities=12% Similarity=-0.028 Sum_probs=82.7
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc
Q 005808 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (676)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 598 (676)
++.......+.+.|...+.......+-+. ..+..++.-....+...++...+.+......++.. ...++...+..
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHC
Confidence 34444555678888888877654322221 22233343344445466777777776654444333 33333445567
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
|++..|..+|...-..........+.+|.++..+|+.++|..+|+++..
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999887665556688899999999999999999999999876
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.41 E-value=0.35 Score=40.68 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (676)
++..+.++..++..|.|..++-++.. -+...+.+..+.|+....++..|+..++..+
T Consensus 33 ~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 33 PEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp -CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666655432 2345556666666666666666666666666
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.40 E-value=0.087 Score=52.56 Aligned_cols=187 Identities=14% Similarity=0.064 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHH----
Q 005808 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD-----ILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKS---- 518 (676)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~---- 518 (676)
..+...+|.+|...|++++-..++.......+.-+. ....+-..+.. .+..+.-++.+..+++-..+...
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999988888776555433322 22233333333 34455555666666554322211
Q ss_pred --HHHHHHHHHHHcccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cCc---
Q 005808 519 --AYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYID---KRF--- 584 (676)
Q Consensus 519 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~--- 584 (676)
.-..+|..|...|+|.+|...+.+..+... .-.+++.....+|...+++.++...+.++.... +.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 223578888888888888777777665321 124566667777788888888888887775432 111
Q ss_pred -HHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHHhccH
Q 005808 585 -SKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPS-----NIECLYLRASCYHAIGEY 635 (676)
Q Consensus 585 -~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~ 635 (676)
+.....-|.++. ..++|..|...|-.++..... ...+...++.+-...++.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 233445577777 788888888877777643221 123444555555555554
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.32 E-value=1 Score=44.92 Aligned_cols=229 Identities=10% Similarity=-0.076 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHH-cccHHHHHHHHHHHHHhCCCc----HH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-----IGRGTARAF-QRELEAAISDFTEAIQSNPSA----GE 450 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~al~~~~~~----~~ 450 (676)
-.+.+.+|..|...|++++-..++......-+.-+.+. ..+-..+.. .+..+.-++.+..+++...+. ..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999998887654433332222 122222221 234444455555555432222 12
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCH--
Q 005808 451 --AWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHERGIVNFKFKDFNAAVEDLSACVKLD---KENK-- 517 (676)
Q Consensus 451 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~-- 517 (676)
.-..+|..|+..|+|.+|...+.+..+.... + .+++.....+|...+++.++...+.++.... +.++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2337899999999999999988888764221 1 4567777888999999999999998886542 2233
Q ss_pred --HHHHHHHHHHH-HcccHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHH-H-HHhc-CcCcHH
Q 005808 518 --SAYTYLGLALS-SIGEYKKAEEAHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQ-Q-VLYI-DKRFSK 586 (676)
Q Consensus 518 --~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~-~-al~~-~~~~~~ 586 (676)
.....-|..+. ..++|..|...|-+++.... ....+...++.+-...++..+-...+. + .... .|. ..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pe-i~ 257 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRD-ID 257 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHH-HH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCcc-HH
Confidence 33445677888 89999999999888875432 122344445555555555322222211 1 1111 221 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808 587 AYHLRGLLLHGLGQHKKAIKDLSSG 611 (676)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~a 611 (676)
.+..+..+ +..+++.+-...+...
T Consensus 258 ~l~~L~~a-~~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 258 AMKSVAEA-SHKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHS
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHH
Confidence 33444443 4456676555555443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.042 Score=59.67 Aligned_cols=116 Identities=10% Similarity=-0.046 Sum_probs=59.0
Q ss_pred hcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--H-cccHHHHHHHHHHHHhc--------Cccc----------HH
Q 005808 495 KFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALS--S-IGEYKKAEEAHLKAIQL--------DRNF----------LE 552 (676)
Q Consensus 495 ~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~-~g~~~~A~~~~~~al~~--------~p~~----------~~ 552 (676)
..++ ++.|+..+++....+|.....+ ..+.+.. . ..+--+|+..+.+.++. .+.+ ..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3444 5778888888888877654322 2222211 1 23344566666666532 1111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 005808 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (676)
Q Consensus 553 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (676)
.+...+..+...|+++-|+.+.+++....|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 23333444444555555555555555555555555555555555555555555444443
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.08 E-value=0.4 Score=53.75 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=66.7
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 005808 389 IAQVNEGKYASAIS-IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (676)
Q Consensus 389 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 467 (676)
......+++++|.. ++.. -|+ ......++..+...|.++.|+...+ ++... .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456889998876 4411 110 1222556667777888888776542 22222 234567889998
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005808 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (676)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (676)
|.+..+. .+++..|..+|..+...++++.|..+|.++
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8887532 356788999999999999999999888875
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.12 Score=56.12 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=87.1
Q ss_pred HcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHH--H-hcCCHHHHHHHHHHHHHh--------CCCC----------HH
Q 005808 461 ALGE-SVEAIQDLSKALEFEPNSADILHERGIVN--F-KFKDFNAAVEDLSACVKL--------DKEN----------KS 518 (676)
Q Consensus 461 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~--~-~~~~~~~A~~~~~~al~~--------~~~~----------~~ 518 (676)
..++ ++.|+..+++....+|..... +..+.+. . ...+--+|++.+.+.++. .+.+ ..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 588999999999998865432 2222222 1 223456788888887742 2222 23
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 577 (676)
.+...+..+...|+++-|+.+.++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45556788888999999999999999999999999999999999999999999776654
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.50 E-value=0.53 Score=52.72 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=69.0
Q ss_pred HHHHcccHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 005808 424 ARAFQRELEAAIS-DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (676)
Q Consensus 424 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 502 (676)
.....+++++|.. .+. .-|+ ......+...+...|.++.|+...+ ++... .......|+++.|
T Consensus 608 ~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A 671 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLA 671 (814)
T ss_dssp HHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHH
Confidence 3346788888866 431 1110 1222566777888899888886552 33322 3345678999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005808 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (676)
Q Consensus 503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (676)
.+..+. .++...|..+|..+...++++.|+.+|.++
T Consensus 672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 887643 367889999999999999999999999875
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=3.4 Score=42.21 Aligned_cols=184 Identities=8% Similarity=-0.051 Sum_probs=84.3
Q ss_pred cccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----hcC
Q 005808 428 QRELEAAISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF----KFK 497 (676)
Q Consensus 428 ~g~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~~ 497 (676)
.|+++.|++.+....+. .+....+...+..++...|+|+...+++.-..........+...+..... ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37778887766544332 12335666777777788888877766665544433332222222211111 111
Q ss_pred CHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----c--ccHHHHHHHHHH
Q 005808 498 DFNAAVEDLSACVKLD----KE-------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----R--NFLEAWGHLTQF 560 (676)
Q Consensus 498 ~~~~A~~~~~~al~~~----~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~la~~ 560 (676)
..+. ......+..- .+ .......++.++...|++.+|...+.....-. + .-.+.+....++
T Consensus 109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1111 0011111110 00 12233445555566666666655555543211 0 113444555555
Q ss_pred HHHcCCHHHHHHHHHHHHh---cCcCc----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 005808 561 YQDLANSEKALECLQQVLY---IDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (676)
Q Consensus 561 ~~~~~~~~~A~~~~~~al~---~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (676)
+...+++..|...+.++.. ..+.. ...+...|.++...++|.+|-.+|..++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5555555555555555421 11111 12344455555555555555555555443
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.00 E-value=1.9 Score=44.10 Aligned_cols=185 Identities=12% Similarity=-0.014 Sum_probs=112.1
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHcC
Q 005808 394 EGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR----AALG 463 (676)
Q Consensus 394 ~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~g 463 (676)
.|++++|++.+....+. .+....+...+..++...|+++...+++.-..........+...+.... ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36777787776554432 2334677777888888888888877766554443333322222222111 1112
Q ss_pred CHHHHHHHHHHHHhc----CCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHH
Q 005808 464 ESVEAIQDLSKALEF----EPN-------SADILHERGIVNFKFKDFNAAVEDLSACVKLDK--EN----KSAYTYLGLA 526 (676)
Q Consensus 464 ~~~~A~~~~~~al~~----~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~----~~~~~~la~~ 526 (676)
..+... ....+.. ... ...+...++.++...|++.+|...+.....-.- .+ .+.+.....+
T Consensus 109 ~~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222111 1111111 111 234557788899999999999988888754211 11 3567777888
Q ss_pred HHHcccHHHHHHHHHHHHhc---Cccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005808 527 LSSIGEYKKAEEAHLKAIQL---DRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (676)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 580 (676)
+...+++.+|...++++... .+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88899999998888886421 1222 345677888888899999998888888754
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.81 E-value=1.6 Score=36.83 Aligned_cols=189 Identities=14% Similarity=0.028 Sum_probs=91.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--C----------
Q 005808 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--D---------- 513 (676)
Q Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~---------- 513 (676)
|..++....++..+.-.|.+..++-++.. -+.....+..+.+|....++..|+..++..+.- +
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 44445555666677777777776665532 234555566667777777777777777777622 1
Q ss_pred -----CCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCcH-
Q 005808 514 -----KENKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRFS- 585 (676)
Q Consensus 514 -----~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~- 585 (676)
|.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.+-..+-.--. ..-+.+. ++..+....
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~-------i~~~~~~~i~ 177 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKEN-------VRQTGRRGIE 177 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC------------------CHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHH-------HHhhhhccch
Confidence 22222 33445666666666666666666666555543322211100000 0000000 000000000
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Q 005808 586 -KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE-CLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (676)
Q Consensus 586 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 651 (676)
..+......+..... ...++....-|.-.. .-...+..|+.+|-.++...+|...-..+|.
T Consensus 178 ~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 178 EEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 001111111111111 333444445565332 2234667788899999999999988888885
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.72 E-value=0.44 Score=47.90 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=78.8
Q ss_pred hhhhhHHHHHHHH-HHHHhcCCHHHHHHHHHHHHccc-----CChh------H------------HHHHHHHHHHhhCHH
Q 005808 31 SVMASAITARIEL-AKLCSLRNWSKAIRILDSLLAQS-----YEIQ------D------------ICNRAFCYSQLELHK 86 (676)
Q Consensus 31 ~~~~~~~~~~~~~-~~~~~~~~y~~Ai~~y~~ai~~~-----~~~~------~------------~~~ra~~~~~~g~~~ 86 (676)
.++.......... ......|+...|+..+.+|+.+. ++.. . ...++.+++..|++.
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4455444444333 33566899999999999999875 1110 0 124566788999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 87 HVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 87 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
+|+..+..++..+|-+-.+|..+-.+|...|+..+|+..|++.-
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999873
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.89 Score=39.24 Aligned_cols=44 Identities=11% Similarity=-0.040 Sum_probs=21.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005808 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (676)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445555555544433 3344555555555555555555555544
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.30 E-value=1.3 Score=38.14 Aligned_cols=108 Identities=8% Similarity=-0.035 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 459 (676)
+++..|.+| +..|+++.|.++.+.+ ++...|..+|......|+++-|..+|.++-. +..+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence 345555544 4567777777776654 4566777777777777777777777766421 12334445
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005808 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (676)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (676)
...|+.+.-....+.+..... +.....+++..|+++++++.+.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555444433333322221 11222334455666666555543
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.14 E-value=0.71 Score=46.38 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 005808 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA-AISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (676)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~ 462 (676)
+...|......|+.+.|...+.+++......+-.-. . ...+-. ....++.. ...+...++..+...
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~--~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~ 184 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--R-----DFQFVEPFATALVED------KVLAHTAKAEAEIAC 184 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--T-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC--C-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHC
Confidence 344455556678999999999999987543211000 0 001111 01111111 112344577778888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005808 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (676)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (676)
|++.+++..+..++..+|-+..++..+..++...|+..+|+..|+++..
T Consensus 185 g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 185 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998888999999999999999999988888754
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.54 E-value=9.1 Score=40.75 Aligned_cols=185 Identities=8% Similarity=-0.113 Sum_probs=109.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 005808 456 GQARAALGESVEAIQDLSKALEFEPNSAD----ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (676)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 531 (676)
+.......+.+.|...+.......+-+.. .+..++.-....+...++...+.+......+ ......++......|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCC
Confidence 33344455778888887776543332322 2223333334445355666666665544333 333333444455678
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------cC-c---
Q 005808 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-----------------------KR-F--- 584 (676)
Q Consensus 532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------------~~-~--- 584 (676)
+++.|..++..+-...+......+.+|.++...|+.++|..+|.++.... +. .
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~ 379 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSAL 379 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHH
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhh
Confidence 88888888877655444557778888888888888888888888775421 00 0
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005808 585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643 (676)
Q Consensus 585 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (676)
...-...+..+...|....|...+....... ++.-...++.+....|.+..++....
T Consensus 380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 380 TQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0112345566777788888877777766542 23444566777777777776665443
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.08 E-value=3.4 Score=38.22 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH
Q 005808 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450 (676)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 450 (676)
.++..|+.++|+..+...++.+|.++.....+..+++-.|+++.|..-++.+.+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4566777888888888888888888888777888888888888888888888887776643
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.98 E-value=2.9 Score=38.69 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=31.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Q 005808 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (676)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 550 (676)
+++.|+.++|+..+...++.+|.+......+...++-.|++++|...++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3445555555555555555555555555555555555555555555555555555554
No 251
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.89 E-value=1.9 Score=48.22 Aligned_cols=97 Identities=7% Similarity=-0.155 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCcHHHHHHHH
Q 005808 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL----DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRG 592 (676)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la 592 (676)
..+..+...+.+.|+.++|...|..+.+. ..-+...|+.+...|.+.|+.++|.++|++..+.. .-+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45667777788888888888887665432 22346777777788888888888888888776542 12456677777
Q ss_pred HHHHHcCC-HHHHHHHHHHhhcC
Q 005808 593 LLLHGLGQ-HKKAIKDLSSGLGI 614 (676)
Q Consensus 593 ~~~~~~g~-~~~A~~~~~~al~~ 614 (676)
.++.+.|+ .++|..+|+++...
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 77777776 46777777777654
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.63 E-value=2.1 Score=47.87 Aligned_cols=99 Identities=8% Similarity=-0.133 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 005808 415 PEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHER 489 (676)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 489 (676)
...+..+...+.+.|+.++|...|...... ..-+...|..+...+.+.|+.++|.++|+++.... ..+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346778888889999999999998765432 23466778888888999999999999999887653 2366778888
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHhC
Q 005808 490 GIVNFKFKD-FNAAVEDLSACVKLD 513 (676)
Q Consensus 490 a~~~~~~~~-~~~A~~~~~~al~~~ 513 (676)
...+.+.|+ .++|.++++++....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888888887 478888998888764
No 253
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.79 E-value=0.92 Score=46.83 Aligned_cols=81 Identities=10% Similarity=-0.034 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 460 (676)
...+..+|........+..|..+|.++....|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999998877667888888877664
Q ss_pred H
Q 005808 461 A 461 (676)
Q Consensus 461 ~ 461 (676)
.
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.45 E-value=1.4 Score=45.58 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q 005808 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (676)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (676)
..+..+|.+......+..|..+|.+|..+.|.+...++.+|.+....|+.-+|+-+|.+++......+.+..++..++.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667888888888999999999999999999999999999999999999999999999998877788888888877754
No 255
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.42 E-value=1.4 Score=35.68 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=72.1
Q ss_pred hhhcccchhhhhhhhhHHHHHHHHHHHH---hcCCHHHHHHHHHHHHcccCChhHHHHHHH-HHHHhhCHHHHHHHHHHH
Q 005808 20 ICEIDELVRVDSVMASAITARIELAKLC---SLRNWSKAIRILDSLLAQSYEIQDICNRAF-CYSQLELHKHVIRDCDKA 95 (676)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~-~~~~~g~~~~A~~~~~~a 95 (676)
||+++|-..++-+- .--....+.| ..|+..+-+.||-+.-.. .-|.++|. ....+|+-++=-+.+...
T Consensus 46 ICNiiD~a~C~y~v----~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~----se~vd~ALd~lv~~~KkDqLdki~~~~ 117 (172)
T 1wy6_A 46 ICNLLESIDCRYMF----QVLDKIGSYFDLDKCQNLKSVVECGVINNTL----NEHVNKALDILVIQGKRDKLEEIGREI 117 (172)
T ss_dssp HHHHHHHCCHHHHH----HHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC----CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eeecchhhchhHHH----HHHHHHhhhcCcHhhhcHHHHHHHHHHhcch----HHHHHHHHHHHHHhccHhHHHHHHHHH
Confidence 67777766655441 1112224445 578999999999863222 23788888 556667776666666665
Q ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005808 96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (676)
Q Consensus 96 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a 129 (676)
+.-+|-.+..++.+|.+|.++|+..+|...+.+|
T Consensus 118 l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 118 LKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 6667778999999999999999999999999999
No 256
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.72 E-value=6.7 Score=43.60 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 106 YILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 106 ~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
|+....|+..+++.+.+.+.|.+..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456778888999999998888875
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.42 E-value=5.1 Score=46.61 Aligned_cols=142 Identities=13% Similarity=-0.017 Sum_probs=87.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------
Q 005808 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-------------------- 445 (676)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 445 (676)
.+...+...+.++-+.. .+...|.++..-+.+|.++...|++++|..+|.++...-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34455666677665544 334567777777888999999999999988887763210
Q ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 005808 446 ---PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSA----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (676)
Q Consensus 446 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (676)
...+..|..+..++...|.++.+++....+++..+ ++. ..|..+-..+...|+|++|...+...-.. ....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~ 971 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK 971 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence 01123455566677777888888888887776643 222 24566667777788888887766543221 2223
Q ss_pred HHHHHHHHHHHHccc
Q 005808 518 SAYTYLGLALSSIGE 532 (676)
Q Consensus 518 ~~~~~la~~~~~~g~ 532 (676)
..+..+...++..|.
T Consensus 972 ~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 444444444444443
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.33 E-value=1.2 Score=45.44 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (676)
-...+..+|..++..|+++.|.+.|.++...... -.+.++....++...+++..+..++.++..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4456777888888888888888888777654322 245666666666666777777666666543
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.26 E-value=1.7 Score=44.34 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCH----H
Q 005808 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNP---SAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSA----D 484 (676)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~ 484 (676)
...++..+|..+...|+++.|.+.|.++..... .-.+.+....+++...+++..+...+.++..... .++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 456788999999999999999999999887543 3367888899999999999999999999865421 222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 005808 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (676)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 514 (676)
.....|.++...++|..|...|..++....
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 445668888899999999999998876643
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.87 E-value=1 Score=46.11 Aligned_cols=62 Identities=11% Similarity=-0.049 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Q 005808 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (676)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 582 (676)
.+..+-+.|...+.++.|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..++...|
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34445555555555555555555543 2211 23344455555555555555555555555444
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.83 E-value=2.2 Score=43.73 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcccHHHH----------HHHHHHHHH
Q 005808 385 LSRGIAQVNEGKYASAISIFDQILK-----------EDPMYPEALIGRGTARAFQRELEAA----------ISDFTEAIQ 443 (676)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A----------~~~~~~al~ 443 (676)
+..-..++..+++++|..+...++. .++-.+.+|++.+.++...|+.... ...+-.++.
T Consensus 140 lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~r 219 (523)
T 4b4t_S 140 LLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLK 219 (523)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Confidence 3334455677888888887765541 1334467888888888877766543 222323332
Q ss_pred h-----CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005808 444 S-----NPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACV 510 (676)
Q Consensus 444 ~-----~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (676)
. ++. ....+..+-+.|...+.+++|..+..++. .|.. ...++.+|.++.-.++|.+|.+++..++
T Consensus 220 ta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 220 IASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2 222 24567778899999999999999999885 3422 3456778999999999999999999999
Q ss_pred HhCCCC
Q 005808 511 KLDKEN 516 (676)
Q Consensus 511 ~~~~~~ 516 (676)
...|.+
T Consensus 298 rkap~~ 303 (523)
T 4b4t_S 298 RKAPHN 303 (523)
T ss_dssp SSCSCS
T ss_pred HhCCcc
Confidence 887754
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.78 E-value=7.8 Score=45.04 Aligned_cols=119 Identities=11% Similarity=-0.061 Sum_probs=76.7
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Q 005808 420 GRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-------------------- 479 (676)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 479 (676)
.+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|.++....
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445555666655543 344567777777889999999999999999998763211
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcccHHHHHHHHHH
Q 005808 480 ---PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NK----SAYTYLGLALSSIGEYKKAEEAHLK 542 (676)
Q Consensus 480 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~----~~~~~la~~~~~~g~~~~A~~~~~~ 542 (676)
...+..|..+..++.+.+.++.+++..+.+++..+. +. ..|..+-..+...|+|++|...+..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 011234555666677777777777777777766432 22 2455666667777777777666644
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.36 E-value=31 Score=38.47 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP---M---YP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG- 449 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~- 449 (676)
..+++.+|.++...+ .+++..+...+..+. . +. .+-..+|.++.-.++ +++.+.+...+..+....
T Consensus 413 ~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 345566666655444 578888888776543 0 11 345577777776665 456777777776433211
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHH
Q 005808 450 -EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA----YTYLG 524 (676)
Q Consensus 450 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~la 524 (676)
.+-+.+|.++.-.|+-+.....+..+.+...+...-...+|..+...|+.+.+-...+..... .++.. ...+|
T Consensus 490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alg 567 (963)
T 4ady_A 490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 244557777777788776666666666543332223334455555677777666666655442 23332 34567
Q ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHc--CC-H
Q 005808 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--GQ-H 601 (676)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--g~-~ 601 (676)
..|...|+...-...+..+.....++..-...+|......|+.+.+...+....+ ..++.+.+..+.++... |+ .
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC
T ss_pred HHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc
Confidence 7778899966555577766654333333333344444445665444444433322 23455554444443332 22 2
Q ss_pred HHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHhc
Q 005808 602 KKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIG 633 (676)
Q Consensus 602 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g 633 (676)
.+++..+..... ++++. .+...||.+.....
T Consensus 646 ~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 646 QSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCc
Confidence 678888888764 44321 24455555554433
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.19 E-value=43 Score=32.16 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q 005808 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (676)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (676)
-.++..+..+|..+...+++.+|..+|- +-. .+.+..+..+-.-+... ..|.....+...|.
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~-~~s~~~~a~mL~ew~~~---------------~~~~e~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LGT-KESPEVLARMEYEWYKQ---------------DESHTAPLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSC-TTHHHHHHHHHHHHHHT---------------SCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hcC-CchHHHHHHHHHHHHHh---------------cCCccHHHHHHHHH
Confidence 3567788888888888888888777763 111 11112222211111111 12344444444443
Q ss_pred -HHHHcCCHHHHHHHHHHhhc----C------------------CCCCHHH-HHHHHHHHHHhcc---HHHHHHHHHHHH
Q 005808 594 -LLHGLGQHKKAIKDLSSGLG----I------------------DPSNIEC-LYLRASCYHAIGE---YREAIKDYDAAL 646 (676)
Q Consensus 594 -~~~~~g~~~~A~~~~~~al~----~------------------~p~~~~~-~~~la~~~~~~g~---~~~A~~~~~~al 646 (676)
.|...++...|...++...+ . .|..+.. ...+..+-++.+. |..-.+.|+..+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l 274 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANL 274 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 35667777777665444332 1 1223321 1122222333442 445556666667
Q ss_pred hhCC-CcHHHHHHHHHHHHHh
Q 005808 647 DLEL-DSMEKFVLQCLAFYQV 666 (676)
Q Consensus 647 ~~~p-~~~~~~~~~~~~~~~~ 666 (676)
+.+| .-....-.++..||..
T Consensus 275 ~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 275 NELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HTTTTTTHHHHHHHHHHHHCC
T ss_pred HhcHHHHHHHHHHHHHHHcCC
Confidence 7776 5566666677777644
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.75 E-value=58 Score=31.26 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 005808 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (676)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 558 (676)
-.+++.+..+|..|++.+++.+|..+|- ...++ +..+..+-.-+.. +..|.....+...+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~---------------~~~~~e~dlfiaRa 193 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK---------------QDESHTAPLYCARA 193 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH---------------TSCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH---------------hcCCccHHHHHHHH
Confidence 3578999999999999999999988873 12222 2332222111111 11234444443333
Q ss_pred -HHHHHcCCHHHHHHHHHHHHh----cCc------------------CcHHH-HHHHHHHHHHcCCH---HHHHHHHHHh
Q 005808 559 -QFYQDLANSEKALECLQQVLY----IDK------------------RFSKA-YHLRGLLLHGLGQH---KKAIKDLSSG 611 (676)
Q Consensus 559 -~~~~~~~~~~~A~~~~~~al~----~~~------------------~~~~~-~~~la~~~~~~g~~---~~A~~~~~~a 611 (676)
..|...++...|...+....+ .+| ..+.. +..+..+-.+.+.. ..-.+.|+..
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~ 273 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEAN 273 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 346678888888776554442 122 22221 22233344445543 3334445555
Q ss_pred hcCCC-CCHHHHHHHHHHHHHh
Q 005808 612 LGIDP-SNIECLYLRASCYHAI 632 (676)
Q Consensus 612 l~~~p-~~~~~~~~la~~~~~~ 632 (676)
++.+| .....+..+|..|+..
T Consensus 274 l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 274 LNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHhcHHHHHHHHHHHHHHHcCC
Confidence 66666 6667777778777754
No 266
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=68.81 E-value=6.5 Score=29.22 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 005808 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQ 65 (676)
Q Consensus 35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~ 65 (676)
.++.-..+.-++=..|+|++|+.+|..+|+.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344444445555788999999999988764
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.45 E-value=59 Score=36.75 Aligned_cols=99 Identities=12% Similarity=-0.035 Sum_probs=70.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CC-------------------
Q 005808 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DP------------------- 616 (676)
Q Consensus 557 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p------------------- 616 (676)
+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-.- ..
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 445556677766543 345566777777788999999999999999999887521 00
Q ss_pred -C--CHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-CCCcHHHHHHH
Q 005808 617 -S--NIECLYLRASCYHAIGEYREAIKDYDAALDL-ELDSMEKFVLQ 659 (676)
Q Consensus 617 -~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~ 659 (676)
. ....|.....++.+.+-++-++...+.|+.. .++++.....+
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l 938 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAI 938 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHH
Confidence 0 1236778888999999999999999999974 45555543333
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=65.22 E-value=14 Score=26.26 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHcccCChhHH
Q 005808 41 IELAK-LCSLRNWSKAIRILDSLLAQSYEIQDI 72 (676)
Q Consensus 41 ~~~~~-~~~~~~y~~Ai~~y~~ai~~~~~~~~~ 72 (676)
+++.+ ++..|++++|+.+|.+||..++++...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 44444 668999999999999999999776663
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=64.99 E-value=10 Score=28.04 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 104 QAYILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 104 ~a~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
..+-|++..++..|+|++|+.+.++|.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345566777777777777777776663
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.45 E-value=95 Score=35.07 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=67.4
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C--------------------
Q 005808 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-D-------------------- 581 (676)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-------------------- 581 (676)
+...+...|.++-+ .+.+...|.++..-+.+|.++...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 45556667776644 3455666777777788899999999999999999876311 0
Q ss_pred c--CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCCHH
Q 005808 582 K--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DPSNIE 620 (676)
Q Consensus 582 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 620 (676)
+ .....|.....++...+-++-++...+.|++. .++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 0 11236778899999999999999999999964 345543
No 271
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=63.89 E-value=4.2e-05 Score=76.23 Aligned_cols=215 Identities=16% Similarity=0.132 Sum_probs=108.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 005808 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (676)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 458 (676)
+.+..|..+|.+++..+...+|++.|-++ .+| ..+.....+..+.|.+++-+.++..+.+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dp---s~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP---SSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCC---CSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 44778888888888888888888877654 333 34445555666778888888777766543 2233333345556
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------hCCCCH
Q 005808 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK---------------------LDKENK 517 (676)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------------~~~~~~ 517 (676)
|.+.++..+-.+.+ ..|+... ....|.-++..|.|+.|.-+|..+-. ...+++
T Consensus 126 yAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 66666544322211 1222211 22345555555555554433322100 001233
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q 005808 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (676)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (676)
..|-....++...+.+.-|..+--..+-. ++. +-.+...|...|.+++-+..++.++.+...+...+..+|.+|.+
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc-HHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 34444444444444444443333222211 111 11223344555666666666666665555555566666665555
Q ss_pred cCCHHHHHHHHHH
Q 005808 598 LGQHKKAIKDLSS 610 (676)
Q Consensus 598 ~g~~~~A~~~~~~ 610 (676)
- ++++-.++++.
T Consensus 276 Y-~PeKlmEHlkl 287 (624)
T 3lvg_A 276 F-KPQKMREHLEL 287 (624)
T ss_dssp S-CTTHHHHHHTT
T ss_pred c-CHHHHHHHHHH
Confidence 3 34444444443
No 272
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=58.14 E-value=0.00023 Score=71.01 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005808 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (676)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (676)
+.+.+|..+|.++...+...+|++.|-++ +++..+.....+....|.+++-+.++.-+.+. -..+.+=..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 44678888888888888888888777554 33333445555666778888888777666544 2344444566677
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q 005808 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (676)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 572 (676)
|.+.++..+-.+++. .|+... ....|.-++..|.|+.|.-.|..+ .-|..++.++..+|+|..|++
T Consensus 126 yAk~~rL~elEefl~-----~~N~A~-iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-----GPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHTSCSSSTTTSTTS-----CCSSSC-THHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTT
T ss_pred HHhhCcHHHHHHHHc-----CCCccc-HHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHH
Confidence 777776554332221 233222 234566666666666665544321 112234444444555555444
Q ss_pred HHHHHHhcCcCcHHHHHHHHHH------------------------------HHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 005808 573 CLQQVLYIDKRFSKAYHLRGLL------------------------------LHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (676)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (676)
.-+++ +++.+|-....+ |...|.+++-+..++.++.+...+....
T Consensus 192 aArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmF 266 (624)
T 3lvg_A 192 GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 266 (624)
T ss_dssp TTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHH
T ss_pred HHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHH
Confidence 43332 223333333333 4445555555555555555555555555
Q ss_pred HHHHHHHH
Q 005808 623 YLRASCYH 630 (676)
Q Consensus 623 ~~la~~~~ 630 (676)
..||.+|.
T Consensus 267 TELaILYs 274 (624)
T 3lvg_A 267 TELAILYS 274 (624)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=57.55 E-value=1.3e+02 Score=28.52 Aligned_cols=27 Identities=7% Similarity=-0.127 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005808 481 NSADILHERGIVNFKFKDFNAAVEDLS 507 (676)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (676)
.++..+..+|..|...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467777778888877777777776664
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=55.91 E-value=26 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 005808 106 YILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (676)
Q Consensus 106 ~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~ 137 (676)
.+.+|..+.+.|++++|...|-+|+..+|+..
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 35678888888989999988999988887754
No 275
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=55.40 E-value=16 Score=27.14 Aligned_cols=25 Identities=20% Similarity=-0.060 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHH
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKAL 96 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~al 96 (676)
+..||..+++.|+|++||...++|.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 5678888888899999988776654
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.18 E-value=1.5e+02 Score=28.14 Aligned_cols=28 Identities=14% Similarity=-0.040 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 005808 514 KENKSAYTYLGLALSSIGEYKKAEEAHL 541 (676)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (676)
-.++..+..+|..+...|++.+|..+|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3578999999999999999999988875
No 277
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=52.48 E-value=26 Score=30.97 Aligned_cols=34 Identities=15% Similarity=-0.149 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 005808 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (676)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (676)
....+.+|.++...++|.+|.+.+..|+...|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 3456677777777777777777777777766654
No 278
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=51.93 E-value=26 Score=25.70 Aligned_cols=20 Identities=20% Similarity=0.041 Sum_probs=12.8
Q ss_pred HHHhcCCHHHHHHHHHHHHc
Q 005808 45 KLCSLRNWSKAIRILDSLLA 64 (676)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~ 64 (676)
++=..|+|++|+.+|.++|+
T Consensus 28 e~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 28 KADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 33456777777777777655
No 279
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=50.06 E-value=16 Score=26.38 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=20.7
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHc
Q 005808 37 ITARIELAKLC-SLRNWSKAIRILDSLLA 64 (676)
Q Consensus 37 ~~~~~~~~~~~-~~~~y~~Ai~~y~~ai~ 64 (676)
+.+-.++++-| ..|||+.|+.+|+.+++
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 33444666644 68999999999999876
No 280
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.12 E-value=30 Score=35.03 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCc----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 005808 556 HLTQFYQDLANSEKALECLQQVLYIDK----------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (676)
Q Consensus 556 ~la~~~~~~~~~~~A~~~~~~al~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (676)
.+-.+|++.++..-+...++..-...+ ......+.+|.++...++|.+|.+.+..|+..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 344566666666666665544322211 11234555666666666666666666666555
No 281
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=48.14 E-value=1.1e+02 Score=25.73 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHH---HHHHHHHcccHHHHHHHHHHHHH
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY--P----EALIG---RGTARAFQRELEAAISDFTEAIQ 443 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~----~~~~~---la~~~~~~g~~~~A~~~~~~al~ 443 (676)
...-+..|..++..|+|=+|-++++.+-...+.. . ..+.. .|..+...|+..-|...+.+++.
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455677888899999999999999998776544 1 12222 23344566788888888887765
No 282
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=47.44 E-value=71 Score=23.40 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcccCChh
Q 005808 42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQ 70 (676)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~ 70 (676)
++-.+|..++|.+|..+|.++.....|+.
T Consensus 59 eak~~y~~~ny~ea~~l~~k~~n~ten~~ 87 (106)
T 2vkj_A 59 EGKDLFETANYGEALVFFEKALNLSDNEE 87 (106)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHccccCHH
Confidence 33457899999999999999987775544
No 283
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=47.08 E-value=31 Score=26.01 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHcccCChhHH
Q 005808 37 ITARIELAK-LCSLRNWSKAIRILDSLLAQSYEIQDI 72 (676)
Q Consensus 37 ~~~~~~~~~-~~~~~~y~~Ai~~y~~ai~~~~~~~~~ 72 (676)
+-+-+++.+ ++..|+++.|+.+|.+||..++++...
T Consensus 20 Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 20 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 333355555 568999999999999999998777663
No 284
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=46.56 E-value=34 Score=26.03 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhhCHHHHHHHH
Q 005808 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92 (676)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~~g~~~~A~~~~ 92 (676)
|++..++.+|+|++|..+... .+.+....-.|.|-.++|..+++..-.
T Consensus 45 IR~sSLmNrG~Yq~Al~l~~~----~c~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 45 IRLSSLMNRGDYASALQQGNK----LAYPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHHTT----SCCGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCC----CCCchHHHHHHHHHHhcccHHHHHHHH
Confidence 888889999999999887553 234444556677999999988887665
No 285
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=46.30 E-value=28 Score=25.51 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=9.6
Q ss_pred hcCCHHHHHHHHHHHHc
Q 005808 48 SLRNWSKAIRILDSLLA 64 (676)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~ 64 (676)
..|+|.+|+.+|..+|+
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45566666665555544
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.53 E-value=1.3e+02 Score=25.23 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHH------HHHHHHHHHhccHHHHHHHHHHHHh
Q 005808 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECL------YLRASCYHAIGEYREAIKDYDAALD 647 (676)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~------~~la~~~~~~g~~~~A~~~~~~al~ 647 (676)
-+..+..++..|+|-+|-+.++.+....+.. ...+ ...|....+.||..-|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455667777799999999999998876543 2222 2233455678999999999999977
No 287
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=45.10 E-value=46 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHH
Q 005808 103 LQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF 143 (676)
Q Consensus 103 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~~~~~~~~~~~~~ 143 (676)
+.-+|.+|..++..++|.+|...|..|+...|..+...+..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~ 54 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRM 54 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHH
Confidence 34567778888888888888888888887777665444433
No 288
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=44.79 E-value=23 Score=26.17 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=21.0
Q ss_pred hCCCChhH--HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 005808 98 LDPTLLQA--YILKGCAFSALGRKEEALSVWEKGYEH 132 (676)
Q Consensus 98 ~~p~~~~a--~~~~g~~~~~l~~~~~A~~~~~~al~~ 132 (676)
+||+...| +...|.-.-..|++++|+.+|..|++.
T Consensus 9 ~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 9 MDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34544442 334444556788888888888888644
No 289
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.78 E-value=32 Score=27.19 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=41.5
Q ss_pred hhhhhhhhhhcccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 005808 13 LNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLA 64 (676)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~ 64 (676)
++|..|-+--|.|-..-..+++.....-.++.+++..++|..|........-
T Consensus 38 ~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 38 CDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777666666666667777777777899999999999999999988665
No 290
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=40.35 E-value=33 Score=26.01 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhhCHHHHHHHH
Q 005808 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92 (676)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~~g~~~~A~~~~ 92 (676)
|++..++.+|+|++|..+... .+.+....-.|.|-.++|..+++..-.
T Consensus 44 IR~sSLmNrG~Yq~Al~l~~~----~c~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 44 IRISSLANQGRYQEALAFAHG----NPWPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp HHHHHHHHTTCHHHHHGGGTT----CCCGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCC----CCCchHHHHHHHHHHhcccHHHHHHHH
Confidence 888889999999999875442 244455556777999999998887766
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=38.77 E-value=29 Score=25.07 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKALQL 98 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~al~~ 98 (676)
...+|.=|..+|+|+.|+..|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456777777778888888887777754
No 292
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=38.73 E-value=1.6e+02 Score=24.06 Aligned_cols=57 Identities=18% Similarity=0.029 Sum_probs=43.1
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC
Q 005808 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (676)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 649 (676)
..+..+|+-++--+.+...+...+-++..++.+|.+|.+.|+..+|.+.+.+|-+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 345667777777777777666666678888888888988998888888888887754
No 293
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=37.59 E-value=1e+02 Score=31.15 Aligned_cols=63 Identities=8% Similarity=0.010 Sum_probs=49.2
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCC----------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-ccCC
Q 005808 74 NRAFCYSQLELHKHVIRDCDKALQLDP----------TLLQAYILKGCAFSALGRKEEALSVWEKGYEH-ALHQ 136 (676)
Q Consensus 74 ~ra~~~~~~g~~~~A~~~~~~al~~~p----------~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~~-~~~~ 136 (676)
++=.+|+++|+..-|...++..-...+ +.+.-+|.+|..++-.++|.+|...+..|+.. +|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 444589999999888876654433222 23447889999999999999999999999988 8865
No 294
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=37.27 E-value=66 Score=34.51 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 005808 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (676)
Q Consensus 72 ~~~ra~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~ 120 (676)
...+|...+..|+|.-|...++.++..+|++.+|...++.+|.++|.-.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4578888899999999999999999999999999999999999998544
No 295
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.08 E-value=48 Score=24.26 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=7.2
Q ss_pred HHhhCHHHHHHHHHHHH
Q 005808 80 SQLELHKHVIRDCDKAL 96 (676)
Q Consensus 80 ~~~g~~~~A~~~~~~al 96 (676)
-+.|+|.+|+..|..+|
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 33444444444444333
No 296
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.24 E-value=4.4e+02 Score=28.07 Aligned_cols=77 Identities=10% Similarity=-0.071 Sum_probs=35.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH------H
Q 005808 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR------A 460 (676)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~------~ 460 (676)
.-..++-.|+|+.|+.++-+. +..--..+|.++...|-... -...+..++..+ ..+++.+. +
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~------~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~~~--~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF------SEMDAVHLAIGLASLKLFKI----DSSTRLTKKPKR--DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT------CHHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc------CchhHHHHHHHHHHcCCccC----CCcccccCCCcc--cccHHHHHHHHHHHh
Confidence 344566789999999987754 22222333444444444432 122233333221 22233222 3
Q ss_pred HcCCHHHHHHHHHHH
Q 005808 461 ALGESVEAIQDLSKA 475 (676)
Q Consensus 461 ~~g~~~~A~~~~~~a 475 (676)
...+..+|+++|--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 567888888887655
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.39 E-value=2.4e+02 Score=24.70 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 005808 551 LEAWGHLTQFYQDLANSEKALECLQQVLY--IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (676)
Q Consensus 551 ~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (676)
..+|..++..+ ..+...++..+|.-+.. +....+..|...|..+...|++.+|..+|+.+++..
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444444433 12334455555555443 233445556666666666666666666666666554
No 298
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=34.05 E-value=49 Score=24.18 Aligned_cols=12 Identities=8% Similarity=-0.177 Sum_probs=5.7
Q ss_pred HHHHHHHHHHcc
Q 005808 54 KAIRILDSLLAQ 65 (676)
Q Consensus 54 ~Ai~~y~~ai~~ 65 (676)
+|+.+.++|++.
T Consensus 10 ~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 10 MARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445444444443
No 299
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=33.60 E-value=64 Score=24.26 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=19.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808 624 LRASCYHAIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
.+|..+...|+++.|+.+|-+|+...|+..+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4566666666666666666666666665444
No 300
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=31.33 E-value=34 Score=33.53 Aligned_cols=42 Identities=7% Similarity=-0.053 Sum_probs=29.7
Q ss_pred HHHHHHHHHHccc-----CChhH-HHHHHHHHHHhhCHHHHHHHHHHH
Q 005808 54 KAIRILDSLLAQS-----YEIQD-ICNRAFCYSQLELHKHVIRDCDKA 95 (676)
Q Consensus 54 ~Ai~~y~~ai~~~-----~~~~~-~~~ra~~~~~~g~~~~A~~~~~~a 95 (676)
.++..|.+||... ..+.+ |...|.++++.++|.+|+..+-.|
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhh
Confidence 4456777776643 33333 778888888888888888877776
No 301
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=31.00 E-value=26 Score=23.18 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=17.5
Q ss_pred hhhhhhcccchhhhhhhhhHHHHHHHHHHHHhcCCHHHHH
Q 005808 17 HKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAI 56 (676)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Ai 56 (676)
|+|--.|-||+.-.+.+... -.-|++..++.+|+|++|+
T Consensus 22 H~EA~tIA~~L~~~~~~eE~-v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 22 HQEAASIADWLAQEECMAEC-VTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHHHHTSSTTHHH-HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHccchHhHhh
Confidence 45555555665554443322 1226777788888888875
No 302
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=30.94 E-value=61 Score=23.71 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=13.2
Q ss_pred hcCCHHHHHHHHHHHHcc
Q 005808 48 SLRNWSKAIRILDSLLAQ 65 (676)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~ 65 (676)
..|+|++|+.+|..+++.
T Consensus 25 ~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 567888888888777663
No 303
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=30.65 E-value=5.2e+02 Score=27.51 Aligned_cols=77 Identities=17% Similarity=-0.084 Sum_probs=37.0
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-----
Q 005808 420 GRGTARAFQRELEAAISDFTEAIQSNPSAGE-AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----- 493 (676)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~----- 493 (676)
..-.++.-.|+|+.|+.++-+. ...+ +++.++..+ .|-... -...+..++..+ ..+++.+.
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~--~gLL~~----~~~lls~~~~~~--~lN~arLI~~Yt~ 365 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF-----SEMDAVHLAIGLAS--LKLFKI----DSSTRLTKKPKR--DIRFANILANYTK 365 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHH--TTC-----------------------CHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc-----CchhHHHHHHHHHH--cCCccC----CCcccccCCCcc--cccHHHHHHHHHH
Confidence 3556777889999999988754 2222 444444443 444432 122333333322 22222222
Q ss_pred -HhcCCHHHHHHHHHHH
Q 005808 494 -FKFKDFNAAVEDLSAC 509 (676)
Q Consensus 494 -~~~~~~~~A~~~~~~a 509 (676)
+...+..+|+++|--+
T Consensus 366 ~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 366 SFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTTCHHHHHHHHHGG
T ss_pred HhhcCCHHHHHHHHHHH
Confidence 3567888888887655
No 304
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=30.40 E-value=66 Score=24.11 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=8.8
Q ss_pred hcCCHHHHHHHHHHHHc
Q 005808 48 SLRNWSKAIRILDSLLA 64 (676)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~ 64 (676)
..|+|++|+.+|..+|+
T Consensus 27 ~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 27 AESRYQQALVCYQEGID 43 (93)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 34555555555555543
No 305
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.68 E-value=1.3e+02 Score=22.50 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005808 386 SRGIAQVNEGKYASAISIFDQILKEDP 412 (676)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~p 412 (676)
..|..++..|+|=+|-++++.+-...|
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~ 32 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKAT 32 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 345566666777777666666665554
No 306
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=29.68 E-value=1e+02 Score=26.63 Aligned_cols=68 Identities=9% Similarity=-0.119 Sum_probs=49.4
Q ss_pred hhhhhhHHHHH--HHHHHHHhcCCHHHHHHHHHHH-Hccc------CChh--HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 005808 30 DSVMASAITAR--IELAKLCSLRNWSKAIRILDSL-LAQS------YEIQ--DICNRAFCYSQLELHKHVIRDCDKALQ 97 (676)
Q Consensus 30 ~~~~~~~~~~~--~~~~~~~~~~~y~~Ai~~y~~a-i~~~------~~~~--~~~~ra~~~~~~g~~~~A~~~~~~al~ 97 (676)
+++.++...+. -+.++.++.|+-..|++.+.-+ +.+. |-.. -..++|..++..|+|.+|-..++.+..
T Consensus 100 edf~~tpeK~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 100 EDYVATPEKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45445444333 6778899999999999999976 1111 3222 268999999999999999888887754
No 307
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=29.65 E-value=96 Score=33.25 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 005808 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430 (676)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 430 (676)
.+..+..|+..+..|+|.-|..+.+.++..+|++..+...++.++.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888888888888877777663
No 308
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.97 E-value=47 Score=20.55 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.1
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHc
Q 005808 41 IELAKLCSLR-NWSKAIRILDSLLA 64 (676)
Q Consensus 41 ~~~~~~~~~~-~y~~Ai~~y~~ai~ 64 (676)
+++|+++..| ++++|-.+|.+.+-
T Consensus 9 mEiAkLMSLGl~id~A~~~Ye~gi~ 33 (47)
T 1pgy_A 9 MEIARLMSLGLSIEEATEFYENDVT 33 (47)
T ss_dssp HHHHHHHHHCCCSHHHHHHHHHHCS
T ss_pred HHHHHHHHccCChhhHHHHHHcCch
Confidence 7889999877 89999999988754
No 309
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.69 E-value=1.1e+02 Score=30.89 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 85 HKHVIRDCDKALQLDPTL--------LQAYILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 85 ~~~A~~~~~~al~~~p~~--------~~a~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
|+..+.|++.|+..=|.. .-|+..++++|+-.++|++|....++++
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi 217 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 466778888888876642 2389999999999999999999999884
No 310
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.41 E-value=68 Score=25.30 Aligned_cols=19 Identities=5% Similarity=0.085 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhCCCChh
Q 005808 86 KHVIRDCDKALQLDPTLLQ 104 (676)
Q Consensus 86 ~~A~~~~~~al~~~p~~~~ 104 (676)
.+|+..|..++...|.+.+
T Consensus 42 ~~Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 42 QHAVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHhccCCHH
Confidence 3444455555555544443
No 311
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=25.80 E-value=1.5e+02 Score=21.72 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005808 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413 (676)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 413 (676)
.+...+..|.-++..++|.+|..+|+++.....+
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten 85 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSDN 85 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHccccC
Confidence 3677888899999999999999999998765443
No 312
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.61 E-value=81 Score=23.61 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHccc
Q 005808 53 SKAIRILDSLLAQS 66 (676)
Q Consensus 53 ~~Ai~~y~~ai~~~ 66 (676)
++|+.+.++|++.+
T Consensus 13 ~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 13 TAAVAVLKRAVELD 26 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 313
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.34 E-value=1.2e+02 Score=30.82 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 85 HKHVIRDCDKALQLDPTL--------LQAYILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 85 ~~~A~~~~~~al~~~p~~--------~~a~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
|+..+.|++.|+..=|.. .-|+..++++|+-.|+|++|....++++
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi 223 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAI 223 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 466778888888766542 2389999999999999999999999884
No 314
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=23.84 E-value=93 Score=29.88 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=21.1
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 100 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
..++-.|..+|-.+...+++.+|+.++-.|-
T Consensus 293 n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 293 DHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 4455566677777777777777777776663
No 315
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.49 E-value=3.9e+02 Score=23.32 Aligned_cols=66 Identities=8% Similarity=-0.112 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCc
Q 005808 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLG--IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (676)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 652 (676)
.+|..++..+ ..++..++..+|.-... +.-..+..|...|..+...|++.+|...|+.+++..-..
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444433 12234455555554443 334445555566666666666666666666666654443
No 316
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=21.62 E-value=1.2e+02 Score=22.00 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=8.7
Q ss_pred HHhhCHHHHHHHHHHHHH
Q 005808 80 SQLELHKHVIRDCDKALQ 97 (676)
Q Consensus 80 ~~~g~~~~A~~~~~~al~ 97 (676)
-..|+|++|+..|..|++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 334555555555444443
No 317
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.46 E-value=1.3e+02 Score=30.53 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 85 HKHVIRDCDKALQLDPTL--------LQAYILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 85 ~~~A~~~~~~al~~~p~~--------~~a~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
|+..+.+++.|+..=|.. .-|+..++++|+-.++|++|..+.++++
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi 229 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVI 229 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 567788899998876642 2389999999999999999999998884
No 318
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.29 E-value=1.1e+02 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=19.8
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005808 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (676)
Q Consensus 100 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 130 (676)
..++-.|..+|-.|...+++.+|+.++-.|-
T Consensus 315 n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 315 DEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 4455566666666666677777776666663
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.04 E-value=4.4e+02 Score=23.41 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCcHH
Q 005808 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (676)
Q Consensus 615 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 654 (676)
.-..+..|...|..+...|++.+|...|+..++..-...+
T Consensus 146 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 146 GQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3444555666666666666666666666666665544433
No 320
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.74 E-value=1.1e+02 Score=24.12 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=10.5
Q ss_pred HHhhCHHHHHHHHHHHHH
Q 005808 80 SQLELHKHVIRDCDKALQ 97 (676)
Q Consensus 80 ~~~g~~~~A~~~~~~al~ 97 (676)
-..|+|++|+..|..|++
T Consensus 29 D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 344666666666666554
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.63 E-value=4.5e+02 Score=23.35 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHHHHHHHHh--cCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 005808 569 KALECLQQVLY--IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (676)
Q Consensus 569 ~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (676)
.+..+|.-+.. +....+..|...|..+...|++.+|..+|+.+++....
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44455555543 34456677777777788888888888888887775533
No 322
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.35 E-value=6.1e+02 Score=24.77 Aligned_cols=81 Identities=9% Similarity=-0.081 Sum_probs=45.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------
Q 005808 490 GIVNFKFKDFNAAVEDLSACVKLD-----------------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------ 546 (676)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 546 (676)
..+.....+.++|++.+++..... .....+...++..|...|+.++|...++++-..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344455667788888777653221 001234556677777778888887777776532
Q ss_pred -Ccc-cHHHHHHHHHHHHHcCCHHHH
Q 005808 547 -DRN-FLEAWGHLTQFYQDLANSEKA 570 (676)
Q Consensus 547 -~p~-~~~~~~~la~~~~~~~~~~~A 570 (676)
.|. ....+...+..+...+++..+
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~ 188 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSF 188 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 111 133344445555556666544
Done!