Query 005810
Match_columns 676
No_of_seqs 222 out of 757
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 14:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1087 Cytosolic sorting prot 100.0 5.5E-68 1.2E-72 580.8 37.4 431 1-473 1-443 (470)
2 KOG1086 Cytosolic sorting prot 100.0 2.5E-49 5.3E-54 419.8 20.1 286 2-293 9-322 (594)
3 cd03569 VHS_Hrs_Vps27p VHS dom 100.0 1.4E-40 3E-45 315.6 17.1 137 2-139 5-141 (142)
4 cd03568 VHS_STAM VHS domain fa 100.0 1.9E-40 4E-45 315.5 17.8 137 2-139 1-137 (144)
5 cd03565 VHS_Tom1 VHS domain fa 100.0 5.3E-40 1.1E-44 311.4 16.4 136 2-138 2-141 (141)
6 cd03567 VHS_GGA VHS domain fam 100.0 1.7E-39 3.7E-44 307.3 16.1 131 2-136 2-137 (139)
7 smart00288 VHS Domain present 100.0 2.2E-37 4.9E-42 290.3 16.1 132 2-134 1-133 (133)
8 PF00790 VHS: VHS domain; Int 100.0 3.2E-36 6.9E-41 284.2 16.4 132 2-134 6-140 (140)
9 cd03561 VHS VHS domain family; 100.0 3.7E-36 8E-41 281.7 15.7 131 2-132 1-133 (133)
10 KOG2199 Signal transducing ada 100.0 1.3E-34 2.9E-39 305.9 24.4 265 2-270 9-368 (462)
11 cd00197 VHS_ENTH_ANTH VHS, ENT 99.9 8.7E-25 1.9E-29 199.0 12.9 109 2-110 1-114 (115)
12 KOG1818 Membrane trafficking a 99.9 1.8E-22 3.8E-27 226.7 10.0 146 3-150 10-156 (634)
13 PF03127 GAT: GAT domain; Int 99.8 6.4E-20 1.4E-24 164.5 8.5 93 180-272 4-96 (100)
14 cd03572 ENTH_epsin_related ENT 98.2 1.2E-05 2.7E-10 75.5 10.7 106 1-108 1-116 (122)
15 PF01417 ENTH: ENTH domain; I 98.1 1.8E-05 4E-10 73.6 10.6 105 2-109 4-119 (125)
16 cd03562 CID CID (CTD-Interacti 97.9 3.6E-05 7.9E-10 70.2 7.1 104 5-113 7-110 (114)
17 cd03571 ENTH_epsin ENTH domain 97.7 0.00037 8E-09 65.6 11.1 106 2-110 2-117 (123)
18 smart00273 ENTH Epsin N-termin 97.7 0.00064 1.4E-08 63.4 12.0 108 2-109 3-117 (127)
19 cd03564 ANTH_AP180_CALM ANTH d 97.3 0.0015 3.3E-08 60.3 9.0 78 2-79 1-78 (117)
20 KOG2374 Uncharacterized conser 97.2 0.0026 5.6E-08 71.3 11.7 135 2-140 8-152 (661)
21 KOG2056 Equilibrative nucleosi 97.1 0.0029 6.4E-08 68.5 10.7 109 3-112 23-139 (336)
22 KOG0251 Clathrin assembly prot 96.9 0.034 7.4E-07 63.4 16.8 80 2-81 24-104 (491)
23 smart00582 RPR domain present 96.1 0.017 3.6E-07 53.1 6.7 92 20-112 14-108 (121)
24 PF13646 HEAT_2: HEAT repeats; 93.6 0.86 1.9E-05 38.5 10.1 87 2-106 1-87 (88)
25 KOG2057 Predicted equilibrativ 92.1 0.65 1.4E-05 50.5 8.6 101 6-108 28-140 (499)
26 PF07651 ANTH: ANTH domain; I 91.2 0.67 1.4E-05 48.5 7.6 76 2-78 4-80 (280)
27 PF12348 CLASP_N: CLASP N term 90.5 2.4 5.3E-05 42.5 10.8 78 36-114 129-209 (228)
28 KOG2160 Armadillo/beta-catenin 89.6 1 2.2E-05 49.4 7.6 93 20-114 105-199 (342)
29 cd00020 ARM Armadillo/beta-cat 88.2 3.5 7.7E-05 35.9 8.8 69 38-108 49-117 (120)
30 PF12717 Cnd1: non-SMC mitotic 86.9 5.6 0.00012 39.2 10.3 88 20-113 7-94 (178)
31 smart00229 RasGEFN Guanine nuc 86.1 11 0.00025 34.5 11.3 104 2-107 10-124 (127)
32 KOG1924 RhoA GTPase effector D 83.9 3.4 7.3E-05 49.6 8.0 22 218-239 322-343 (1102)
33 PF12348 CLASP_N: CLASP N term 82.7 6.4 0.00014 39.5 8.7 97 14-113 16-125 (228)
34 PF13646 HEAT_2: HEAT repeats; 78.8 10 0.00022 31.9 7.4 58 40-110 1-59 (88)
35 cd06224 REM Guanine nucleotide 77.0 31 0.00068 31.0 10.5 85 2-91 2-100 (122)
36 PF08167 RIX1: rRNA processing 74.9 19 0.0004 35.4 9.0 76 36-112 19-98 (165)
37 PF04818 CTD_bind: RNA polymer 72.7 10 0.00022 31.2 5.6 54 57-111 3-59 (64)
38 KOG1924 RhoA GTPase effector D 72.0 23 0.00051 42.9 10.2 8 477-484 538-545 (1102)
39 COG1059 Thermostable 8-oxoguan 71.1 14 0.00031 37.8 7.2 83 15-104 35-124 (210)
40 cd00020 ARM Armadillo/beta-cat 70.8 13 0.00029 32.2 6.3 72 39-112 8-79 (120)
41 PF05004 IFRD: Interferon-rela 69.8 60 0.0013 35.2 12.2 105 4-109 47-158 (309)
42 PF11841 DUF3361: Domain of un 68.3 19 0.0004 35.9 7.3 84 25-110 41-130 (160)
43 PRK09687 putative lyase; Provi 64.1 83 0.0018 33.6 11.8 72 36-107 190-278 (280)
44 PF06812 ImpA-rel_N: ImpA-rela 63.3 28 0.00061 28.8 6.4 58 18-75 1-59 (62)
45 PF12210 Hrs_helical: Hepatocy 62.5 18 0.00039 33.2 5.4 55 189-243 4-58 (96)
46 PF01602 Adaptin_N: Adaptin N 62.2 18 0.0004 40.6 6.8 100 6-109 119-219 (526)
47 KOG2071 mRNA cleavage and poly 60.0 13 0.00028 43.6 5.1 75 34-110 36-110 (579)
48 PF01602 Adaptin_N: Adaptin N 59.8 63 0.0014 36.3 10.5 39 27-65 68-106 (526)
49 smart00509 TFS2N Domain in the 58.9 42 0.00091 29.0 6.9 23 91-113 51-73 (75)
50 KOG2669 Regulator of nuclear m 58.2 2.8E+02 0.0061 30.8 14.5 89 22-112 23-114 (325)
51 PF11707 Npa1: Ribosome 60S bi 57.9 75 0.0016 34.6 10.3 52 40-91 58-111 (330)
52 PF03670 UPF0184: Uncharacteri 57.8 27 0.00058 31.3 5.5 55 185-241 24-78 (83)
53 PF06798 PrkA: PrkA serine pro 57.7 8.4 0.00018 40.8 2.9 78 35-114 38-118 (254)
54 KOG1062 Vesicle coat complex A 56.0 47 0.001 40.5 8.8 89 21-111 162-263 (866)
55 KOG1105 Transcription elongati 55.8 44 0.00094 36.5 7.9 27 89-115 54-80 (296)
56 PRK04778 septation ring format 55.8 2.8E+02 0.0061 32.6 15.2 79 57-140 165-252 (569)
57 PF02854 MIF4G: MIF4G domain; 55.8 43 0.00092 32.2 7.3 86 22-107 107-204 (209)
58 PF06160 EzrA: Septation ring 55.6 2.2E+02 0.0047 33.6 14.2 79 57-140 161-248 (560)
59 KOG4508 Uncharacterized conser 55.5 36 0.00077 38.4 7.2 99 34-133 385-509 (522)
60 KOG2075 Topoisomerase TOP1-int 54.7 41 0.00089 38.9 7.7 95 17-112 185-295 (521)
61 PF00618 RasGEF_N: RasGEF N-te 53.5 43 0.00094 29.6 6.4 56 73-131 33-102 (104)
62 PF12783 Sec7_N: Guanine nucle 52.5 57 0.0012 31.7 7.6 63 51-114 35-105 (168)
63 KOG1820 Microtubule-associated 52.3 1.3E+02 0.0028 37.3 11.8 92 19-115 353-447 (815)
64 smart00543 MIF4G Middle domain 52.2 41 0.00089 32.5 6.6 68 22-90 100-170 (200)
65 PF00618 RasGEF_N: RasGEF N-te 52.1 34 0.00073 30.3 5.5 74 2-77 7-95 (104)
66 cd00183 TFIIS_I N-terminal dom 50.4 48 0.001 28.6 5.9 24 90-113 52-75 (76)
67 KOG1077 Vesicle coat complex A 48.6 62 0.0013 39.2 8.1 74 21-102 94-168 (938)
68 PF12333 Ipi1_N: Rix1 complex 46.7 1.4E+02 0.0031 27.1 8.7 51 40-91 13-63 (102)
69 PF10508 Proteasom_PSMB: Prote 46.7 97 0.0021 35.8 9.4 92 18-111 51-148 (503)
70 cd05391 RasGAP_p120GAP p120GAP 46.4 4E+02 0.0086 29.3 13.5 33 16-51 12-44 (315)
71 PTZ00429 beta-adaptin; Provisi 43.9 1.1E+02 0.0024 37.4 9.7 67 7-73 146-214 (746)
72 KOG3091 Nuclear pore complex, 43.9 1.6E+02 0.0035 34.3 10.3 63 39-108 335-398 (508)
73 KOG1077 Vesicle coat complex A 43.9 69 0.0015 38.9 7.6 74 34-111 325-398 (938)
74 PF09712 PHA_synth_III_E: Poly 43.8 39 0.00085 36.5 5.3 91 36-130 189-281 (293)
75 COG4477 EzrA Negative regulato 43.1 4.3E+02 0.0092 31.4 13.5 41 97-140 211-251 (570)
76 PF14523 Syntaxin_2: Syntaxin- 42.8 1.3E+02 0.0028 26.6 7.7 80 188-268 4-92 (102)
77 KOG1293 Proteins containing ar 42.7 79 0.0017 37.9 7.8 73 39-112 462-534 (678)
78 PF14500 MMS19_N: Dos2-interac 41.5 1.7E+02 0.0038 31.0 9.7 63 50-114 94-156 (262)
79 PF04740 LXG: LXG domain of WX 40.7 2.1E+02 0.0046 28.4 9.7 80 190-269 71-167 (204)
80 PF10508 Proteasom_PSMB: Prote 40.5 1.5E+02 0.0032 34.3 9.7 92 18-111 117-231 (503)
81 PF12530 DUF3730: Protein of u 40.2 2.4E+02 0.0052 29.2 10.3 58 12-69 91-153 (234)
82 PF07106 TBPIP: Tat binding pr 39.0 2.5E+02 0.0054 27.5 9.7 80 187-266 86-167 (169)
83 COG4342 Uncharacterized protei 38.3 2.2E+02 0.0048 30.7 9.6 73 34-112 58-140 (291)
84 PTZ00429 beta-adaptin; Provisi 38.1 1.5E+02 0.0033 36.3 9.5 86 17-106 232-321 (746)
85 PF11698 V-ATPase_H_C: V-ATPas 37.6 1.1E+02 0.0025 29.0 6.8 73 35-110 40-114 (119)
86 PLN03060 inositol phosphatase- 37.3 3.5E+02 0.0075 28.2 10.7 118 4-131 56-185 (206)
87 cd08306 Death_FADD Fas-associa 37.2 83 0.0018 27.8 5.5 70 61-134 4-73 (86)
88 PLN03200 cellulose synthase-in 37.1 1.2E+02 0.0025 41.3 8.9 70 39-109 190-259 (2102)
89 cd08779 Death_PIDD Death Domai 36.1 43 0.00092 29.7 3.5 37 95-134 38-74 (86)
90 PF07899 Frigida: Frigida-like 36.0 3.8E+02 0.0081 29.2 11.3 47 90-136 96-143 (290)
91 PF08631 SPO22: Meiosis protei 35.7 5.5E+02 0.012 27.0 13.0 121 3-128 141-270 (278)
92 PF07531 TAFH: NHR1 homology t 35.3 47 0.001 30.5 3.7 33 80-112 7-39 (96)
93 PF08389 Xpo1: Exportin 1-like 35.3 1.2E+02 0.0025 27.8 6.5 89 23-113 10-117 (148)
94 KOG2021 Nuclear mRNA export fa 34.7 2.7E+02 0.0058 34.4 10.5 92 21-114 24-131 (980)
95 smart00229 RasGEFN Guanine nuc 34.6 1.6E+02 0.0035 26.9 7.2 44 73-116 36-89 (127)
96 PF12783 Sec7_N: Guanine nucle 34.5 2E+02 0.0043 27.9 8.2 71 39-111 74-146 (168)
97 PF11864 DUF3384: Domain of un 34.5 2.3E+02 0.005 32.4 9.9 93 19-111 8-117 (464)
98 smart00549 TAFH TAF homology. 33.7 60 0.0013 29.7 4.0 33 80-112 6-38 (92)
99 cd08319 Death_RAIDD Death doma 33.6 93 0.002 27.7 5.2 70 62-135 5-74 (83)
100 PF14643 DUF4455: Domain of un 33.5 2.6E+02 0.0055 32.3 10.1 47 3-49 50-97 (473)
101 cd06224 REM Guanine nucleotide 33.4 1.8E+02 0.0039 26.1 7.3 45 72-116 27-84 (122)
102 PF14735 HAUS4: HAUS augmin-li 33.4 2.3E+02 0.0051 30.0 8.9 76 190-265 113-192 (238)
103 PHA02713 hypothetical protein; 32.6 1.6E+02 0.0035 34.5 8.4 109 2-111 79-199 (557)
104 KOG2236 Uncharacterized conser 32.5 2.1E+02 0.0046 33.1 8.9 25 456-481 359-384 (483)
105 PF12830 Nipped-B_C: Sister ch 32.4 1.8E+02 0.0038 29.1 7.6 65 43-114 13-77 (187)
106 PF11083 Streptin-Immun: Lanti 32.4 1.9E+02 0.0041 26.9 7.0 32 238-269 50-81 (99)
107 PF13513 HEAT_EZ: HEAT-like re 31.4 66 0.0014 25.1 3.5 52 52-106 1-52 (55)
108 KOG3192 Mitochondrial J-type c 31.3 95 0.0021 31.1 5.3 44 216-259 55-111 (168)
109 KOG0151 Predicted splicing reg 30.5 2.1E+02 0.0045 34.9 8.6 81 34-114 462-556 (877)
110 KOG1242 Protein containing ada 30.2 3.3E+02 0.0071 32.5 10.2 97 27-131 227-339 (569)
111 PF08045 CDC14: Cell division 30.0 1.7E+02 0.0036 31.4 7.3 74 36-110 131-206 (257)
112 PRK14148 heat shock protein Gr 29.8 2.1E+02 0.0045 29.5 7.7 45 218-262 62-109 (195)
113 PRK14140 heat shock protein Gr 29.6 2.2E+02 0.0048 29.2 7.8 43 220-262 61-106 (191)
114 KOG2160 Armadillo/beta-catenin 29.4 7.3E+02 0.016 27.8 12.2 109 2-113 168-284 (342)
115 PF00531 Death: Death domain; 29.3 75 0.0016 26.6 3.8 31 98-129 39-69 (83)
116 smart00005 DEATH DEATH domain, 29.2 95 0.0021 26.6 4.5 69 62-134 8-77 (88)
117 PF11099 M11L: Apoptosis regul 29.1 1.8E+02 0.0039 29.4 6.8 65 24-88 48-115 (167)
118 PF02985 HEAT: HEAT repeat; I 28.8 1.3E+02 0.0029 21.1 4.4 30 40-69 2-31 (31)
119 PRK14162 heat shock protein Gr 28.5 2.2E+02 0.0048 29.3 7.6 44 218-261 61-107 (194)
120 KOG1062 Vesicle coat complex A 28.5 4.2E+02 0.009 32.9 10.8 38 95-134 398-435 (866)
121 PF04826 Arm_2: Armadillo-like 28.4 4.6E+02 0.0099 27.9 10.2 74 39-114 135-208 (254)
122 cd08777 Death_RIP1 Death Domai 28.3 79 0.0017 28.1 3.9 69 62-133 5-74 (86)
123 PF14726 RTTN_N: Rotatin, an a 28.0 2.4E+02 0.0053 25.9 7.0 68 36-107 28-96 (98)
124 KOG4403 Cell surface glycoprot 27.9 4.7E+02 0.01 30.3 10.4 41 96-140 130-170 (575)
125 TIGR02147 Fsuc_second hypothet 27.8 7.9E+02 0.017 26.4 13.9 52 193-244 200-257 (271)
126 PF04961 FTCD_C: Formiminotran 27.4 2E+02 0.0042 29.1 6.9 42 197-238 31-73 (184)
127 PF10363 DUF2435: Protein of u 27.3 3.2E+02 0.0069 24.6 7.6 86 37-128 2-87 (92)
128 PLN00047 photosystem II biogen 27.3 5.7E+02 0.012 28.0 10.6 119 4-132 109-239 (283)
129 PRK14154 heat shock protein Gr 27.2 2.1E+02 0.0045 29.8 7.2 43 220-262 76-121 (208)
130 PRK14143 heat shock protein Gr 27.0 2.4E+02 0.0052 29.9 7.7 44 219-262 90-136 (238)
131 PF12719 Cnd3: Nuclear condens 26.9 3.9E+02 0.0084 28.5 9.5 82 23-107 51-139 (298)
132 PF14555 UBA_4: UBA-like domai 26.7 97 0.0021 23.8 3.6 24 242-265 14-38 (43)
133 KOG0593 Predicted protein kina 26.7 1.4E+02 0.0031 33.3 6.1 66 36-109 45-114 (396)
134 PF09324 DUF1981: Domain of un 26.6 1.5E+02 0.0032 26.2 5.2 35 79-113 15-49 (86)
135 KOG1511 Mevalonate kinase MVK/ 26.6 1.3E+02 0.0028 33.9 5.8 44 217-260 259-308 (397)
136 PF11264 ThylakoidFormat: Thyl 26.5 7.4E+02 0.016 26.0 11.0 125 4-131 53-190 (216)
137 PRK14144 heat shock protein Gr 26.3 3.1E+02 0.0068 28.4 8.2 43 220-262 69-114 (199)
138 PRK14145 heat shock protein Gr 25.9 2.7E+02 0.006 28.7 7.7 45 218-262 67-114 (196)
139 PF07415 Herpes_LMP2: Gammaher 25.6 24 0.00051 39.3 0.1 18 473-490 86-103 (489)
140 PF10363 DUF2435: Protein of u 25.5 2.5E+02 0.0055 25.3 6.6 67 3-70 6-75 (92)
141 COG3515 Predicted component of 25.3 2.2E+02 0.0049 31.5 7.5 75 5-79 39-115 (346)
142 PF12755 Vac14_Fab1_bd: Vacuol 25.3 3.6E+02 0.0078 24.4 7.6 64 36-102 25-88 (97)
143 PRK13266 Thf1-like protein; Re 25.1 6.6E+02 0.014 26.6 10.4 85 4-91 58-153 (225)
144 PHA03098 kelch-like protein; P 25.0 2.4E+02 0.0051 32.3 8.0 107 4-112 61-181 (534)
145 COG3002 Uncharacterized protei 24.7 6.2E+02 0.013 30.9 11.0 130 3-136 60-204 (880)
146 cd08317 Death_ank Death domain 24.7 1.5E+02 0.0033 25.8 4.9 66 64-133 9-74 (84)
147 PRK07360 FO synthase subunit 2 24.6 92 0.002 34.5 4.4 129 3-136 8-175 (371)
148 PRK14139 heat shock protein Gr 24.3 2.9E+02 0.0062 28.2 7.5 42 220-261 56-100 (185)
149 PF14663 RasGEF_N_2: Rapamycin 24.3 1.7E+02 0.0036 27.3 5.4 77 37-114 7-94 (115)
150 PRK14161 heat shock protein Gr 24.0 2.7E+02 0.0059 28.2 7.2 44 219-262 42-88 (178)
151 PLN03076 ARF guanine nucleotid 23.9 5.1E+02 0.011 35.1 11.3 88 18-107 1112-1208(1780)
152 PRK14163 heat shock protein Gr 23.4 2.8E+02 0.006 29.1 7.3 51 218-269 62-115 (214)
153 KOG1820 Microtubule-associated 23.3 2.8E+02 0.006 34.5 8.4 98 14-114 262-368 (815)
154 PF15112 DUF4559: Domain of un 23.2 1E+03 0.023 26.3 12.8 91 34-132 96-194 (307)
155 TIGR03363 VI_chp_8 type VI sec 23.2 2E+02 0.0042 31.9 6.6 67 16-82 51-118 (353)
156 PF12588 PSDC: Phophatidylseri 23.0 3.4E+02 0.0074 26.6 7.4 93 21-116 4-116 (141)
157 PF14500 MMS19_N: Dos2-interac 23.0 6.3E+02 0.014 26.9 10.1 16 51-66 53-68 (262)
158 COG5002 VicK Signal transducti 22.9 2.2E+02 0.0048 32.3 6.8 58 215-272 257-322 (459)
159 TIGR01385 TFSII transcription 22.9 3.3E+02 0.0072 29.8 8.1 25 91-115 53-77 (299)
160 PLN03200 cellulose synthase-in 22.5 3E+02 0.0064 37.7 8.9 107 2-111 15-128 (2102)
161 COG5369 Uncharacterized conser 22.5 2.2E+02 0.0048 33.8 6.9 102 4-110 434-544 (743)
162 PRK14158 heat shock protein Gr 22.4 4.1E+02 0.0089 27.4 8.2 42 220-261 64-108 (194)
163 KOG2035 Replication factor C, 22.4 2.4E+02 0.0051 31.2 6.7 69 9-79 241-313 (351)
164 PRK14155 heat shock protein Gr 22.4 2.3E+02 0.005 29.4 6.5 43 220-262 37-82 (208)
165 KOG4535 HEAT and armadillo rep 22.3 72 0.0016 37.2 3.0 48 22-69 128-181 (728)
166 PF06175 MiaE: tRNA-(MS[2]IO[6 22.3 1.6E+02 0.0034 31.4 5.3 116 3-139 16-133 (240)
167 PF09758 FPL: Uncharacterised 22.3 2E+02 0.0043 28.5 5.7 50 68-117 13-62 (149)
168 PF05004 IFRD: Interferon-rela 22.2 3E+02 0.0066 29.9 7.7 70 18-91 209-283 (309)
169 PRK07003 DNA polymerase III su 22.1 5.3E+02 0.012 32.1 10.3 13 479-491 623-635 (830)
170 cd08805 Death_ank1 Death domai 22.0 2E+02 0.0042 25.7 5.1 69 62-134 7-75 (84)
171 cd01670 Death Death Domain: a 21.9 1.6E+02 0.0035 24.5 4.5 34 98-135 37-70 (79)
172 KOG4246 Predicted DNA-binding 21.7 85 0.0018 38.6 3.5 32 472-508 4-39 (1194)
173 PF08328 ASL_C: Adenylosuccina 21.6 1.7E+02 0.0037 27.9 4.8 63 28-105 47-109 (115)
174 KOG0132 RNA polymerase II C-te 21.6 74 0.0016 38.8 3.0 98 37-139 41-145 (894)
175 PF06209 COBRA1: Cofactor of B 21.6 1.3E+03 0.029 27.0 12.9 106 25-133 308-444 (474)
176 PF01603 B56: Protein phosphat 21.3 2.5E+02 0.0055 31.6 7.1 76 28-105 245-320 (409)
177 PRK14147 heat shock protein Gr 20.8 2.9E+02 0.0064 27.7 6.7 43 220-262 42-87 (172)
178 KOG0414 Chromosome condensatio 20.8 3.4E+02 0.0074 35.0 8.4 58 20-77 980-1037(1251)
179 PRK07764 DNA polymerase III su 20.7 1.3E+03 0.028 28.8 13.4 29 19-49 248-276 (824)
180 TIGR00153 conserved hypothetic 20.6 3.8E+02 0.0083 27.2 7.7 76 189-267 20-101 (216)
181 PF08899 DUF1844: Domain of un 20.6 1.3E+02 0.0027 26.6 3.5 40 187-227 32-71 (74)
182 PF14911 MMS22L_C: S-phase gen 20.4 2.6E+02 0.0056 31.6 6.8 40 49-88 80-119 (373)
183 KOG3598 Thyroid hormone recept 20.2 1.7E+02 0.0038 38.3 5.8 170 418-616 1879-2065(2220)
No 1
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-68 Score=580.84 Aligned_cols=431 Identities=40% Similarity=0.630 Sum_probs=322.8
Q ss_pred ChHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810 1 MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (676)
Q Consensus 1 ~v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask 80 (676)
||+.+|||||++.+.++||++||||||+||.+..+++||+|+|+|||++++++||++||+|||+||||||+.||.+|++|
T Consensus 1 ~v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k 80 (470)
T KOG1087|consen 1 SVGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASK 80 (470)
T ss_pred ChHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC-CCCCC-
Q 005810 81 NVLHEMVKIARKK-PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTPPQ-THPLT- 157 (676)
Q Consensus 81 ~FLneLvKLvk~k-~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~~e~~~piftPp~-t~p~S- 157 (676)
+||+||||+++++ .+..||+|||.||++|+++|++...+++.|+.+|++|+++||+||.+++++.++++|+. .++..
T Consensus 81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~FP~r~~~sl~~~~pp~~~~~~~~ 160 (470)
T KOG1087|consen 81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEFPQRDEESLAVLTPPAVLRPAPE 160 (470)
T ss_pred HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcCCCCccccccccCCCCCCCCCCC
Confidence 9999999999998 89999999999999999999997778999999999999999999999988877776653 11110
Q ss_pred ----CCCCCCCCchhhh-HHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHH
Q 005810 158 ----SYPQNFRNPEHQQ-EAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQR 232 (676)
Q Consensus 158 ----~~P~~lr~a~~~q-~~ae~s~~~E~~~~slsELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~r 232 (676)
.+|.+...+.-.. .........++..++++||++++++++||+|||.+++|++++..++|++++|+++||.+|+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qcr~~q~r 240 (470)
T KOG1087|consen 161 PQEQSGPPNEANASMKSMAGYPTEATPEVSTLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQCRSKQRR 240 (470)
T ss_pred chhhcCCccccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 1111111110001 11112233456677789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHhhhhHHHHHHHHHHHhhhcCCcccccccCCCCCcCCCccccccCCCC----CCCCCCCCCCCC
Q 005810 233 VVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDVDGP----LVDTGDATKQPD 308 (676)
Q Consensus 233 I~rLIq~t~DEelL~eLL~lNDeLn~vL~rYE~l~~g~~~~~~~~~k~~~~~~~~~~LiD~~~~----~~~~~~~~~~~~ 308 (676)
|++||+++.||++|++||++||+|++||++||++.+|..+.. +.+. +.....+|.++. .....+...++.
T Consensus 241 v~~Li~~~~DE~ll~~lL~lND~L~~vL~~ye~~~~g~s~~~--~~~~----e~~~~p~~~~~~~~~~~~s~~~~~~~~~ 314 (470)
T KOG1087|consen 241 VMHLIEETSDEELLCELLKLNDELQRVLERYERIASGSSVAT--TSKS----ETASDPVDQSSSLLDKDDSSIDLNDSLA 314 (470)
T ss_pred HHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHhccccccc--cccc----ccCCCccccCccccccCcCccccccccc
Confidence 999999999999999999999999999999999999933211 1111 222244444433 223345556666
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccCCCCCCCCCCccccchhhhh
Q 005810 309 GRTTSNGGAGAQPLNQLLLPAPAAANGSSPPAAVNPKIDLLSGDDYSSPKEDTSLALVPVGVPQPNTPVSSQQNALVLFD 388 (676)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~lp~pp~~~~~~~~~~~~~~~dlls~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 388 (676)
+|+|.+. . .+.+.+..+.. .....+|.| ..++++++.++++.+|+++.++++.++|
T Consensus 315 ~~ss~~~--------~---~~~~~~~~~~~--~l~~d~~~l-----------~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 370 (470)
T KOG1087|consen 315 SRSSSTG--------I---SATPSSEQPSG--QLLGDLDKL-----------SDQTLLGLAPPPPNSPTASESSSISLLS 370 (470)
T ss_pred cccccCC--------C---cCCCccccccc--chhhhhccc-----------cchhccccCCCCCCCCCCCccccccccc
Confidence 6665222 0 01111222211 112223333 1789999999999999989999999999
Q ss_pred hhccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccccCCCCCCCCCCCcccccccccCCCCCCCCCcCCCCCC
Q 005810 389 MFSDATNAPNSINTQPANMAGQPNSLAPQFHQQQNFQTPEAGLYQNGTAPNMGSPRYEQSIYAQGSGPAWNGQLALPQPT 468 (676)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (676)
+++.+....++..+.++..+ .+..+.|......+....++.+.+..++..+..+....|-... ..+..
T Consensus 371 ~~~~~~s~~s~~~~~~~~~~-----------~~~~~~P~~~~~~s~~~~p~~~~~~~~~p~~p~~~~~~~~~~~-~~~~s 438 (470)
T KOG1087|consen 371 LSSDNQSELSNSATNSPGSS-----------PQESFPPLPQIQKSSTSPPQSDSLMIEQPLTPASKSSPRSSSS-ASTGS 438 (470)
T ss_pred ccccccccCCcccccCCCcc-----------ccccCCCCcccccccccCCCcccccccCCCCcccCCccccccc-ccCCC
Confidence 99988766665444443221 1122222111134556667777666777766666555666655 32455
Q ss_pred CCCcc
Q 005810 469 SPAYG 473 (676)
Q Consensus 469 ~~~~~ 473 (676)
+|.|.
T Consensus 439 ~p~~~ 443 (470)
T KOG1087|consen 439 SPQYD 443 (470)
T ss_pred Cccch
Confidence 55563
No 2
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-49 Score=419.84 Aligned_cols=286 Identities=24% Similarity=0.384 Sum_probs=250.4
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++.||.|||++.+.++||..|.-|||.||.+++++..|+|.|.+||++...+++++||++||+||||||++||.+|++++
T Consensus 9 le~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evgkfr 88 (594)
T KOG1086|consen 9 LEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFR 88 (594)
T ss_pred HHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCC--CCCCCCCCCCCCCCC-C
Q 005810 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVF--PQRSERSAPVFTPPQ-T 153 (676)
Q Consensus 82 FLneLvKLvk~k-----~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~F--P~~~e~~~piftPp~-t 153 (676)
|||||+|++++| +...||.||++|+..|+.+|+. .++|+++|++||++||+- |...+...+++.||. .
T Consensus 89 FLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lpe----~~KikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~p 164 (594)
T KOG1086|consen 89 FLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLPE----EPKIKDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRP 164 (594)
T ss_pred HHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCcc----cchHHHHHHHHHhcCcccCCCCCCCCCccCCCCCCCC
Confidence 999999999875 5679999999999999999985 478999999999999985 444444456665542 2
Q ss_pred CC----------------CCCCCCCCCCchhh--hHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCccccc
Q 005810 154 HP----------------LTSYPQNFRNPEHQ--QEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLR 215 (676)
Q Consensus 154 ~p----------------~S~~P~~lr~a~~~--q~~ae~s~~~E~~~~slsELe~Ar~n~kLLnEML~~~~P~~~e~~d 215 (676)
+. .|++|+|++.+|++ ..+.++..+.++.++|.+.|++|++++++|.|||..+..++...-|
T Consensus 165 kssvFddEEksklL~rLLkSn~PeDLqaANkLIK~lVkeee~k~eKiskR~~aleev~n~vk~l~em~l~~s~eg~a~pd 244 (594)
T KOG1086|consen 165 KSSVFDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEEEHKLEKISKRVKALEEVNNNVKLLEEMLLDYSQEGNASPD 244 (594)
T ss_pred CccccCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 11 16889999999876 3455667777888888899999999999999999999766555556
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHhhcC-CChHHHHHHhhhhHHHHHHHHHHHhhhcCCcccccccCCCCCcCCCccccccC
Q 005810 216 QE-VIVDLVDQCRTYKQRVVHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDV 293 (676)
Q Consensus 216 nE-lIqEL~~qCRsmq~rI~rLIq~t-~DEelL~eLL~lNDeLn~vL~rYE~l~~g~~~~~~~~~k~~~~~~~~~~LiD~ 293 (676)
+| +++++|++|.++|+.++||++++ +|++.|+++|++||.|++||..|+..++|+.+.+..++.+.+ +..+.|||.
T Consensus 245 ~E~~lq~v~~~ce~lr~tlfrlaset~dnD~aL~eILqanD~ltrvi~~ykt~~~G~~~~g~a~t~slp--d~q~~l~~n 322 (594)
T KOG1086|consen 245 NELLLQEVYNRCEQLRPTLFRLASETEDNDPALAEILQANDNLTRVINLYKTPKEGNVANGSARTQSLP--DSQSLLVDN 322 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCcHHHHHHHhhhhhHHhhhhhcccccccccccccceeccCC--cchhheeec
Confidence 77 99999999999999999999998 678999999999999999999999999999987754555554 667788888
No 3
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=100.00 E-value=1.4e-40 Score=315.64 Aligned_cols=137 Identities=36% Similarity=0.608 Sum_probs=132.9
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++++|||||++.+.++||+.|++|||+||+++.+++||+|+|||||+++|+++|++||+|||+||||||.+||.+|++++
T Consensus 5 ~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 84 (142)
T cd03569 5 FDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASRE 84 (142)
T ss_pred HHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCC
Q 005810 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQ 139 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~ 139 (676)
|+++|+++++++++..||+|||++|+.|+++|+++ .+|+.|.++|++|+++||.||+
T Consensus 85 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~-~~l~~i~~~y~~L~~~G~~FP~ 141 (142)
T cd03569 85 FMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK-PQLKYVVDTYQILKAEGHKFPE 141 (142)
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHHHcCCCCCC
Confidence 99999999998899999999999999999999986 4699999999999999999995
No 4
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=100.00 E-value=1.9e-40 Score=315.55 Aligned_cols=137 Identities=29% Similarity=0.564 Sum_probs=132.3
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++.+||||||+.++++||++|++|||+||+++.++|+|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~ 80 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRD 80 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCC
Q 005810 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQ 139 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~ 139 (676)
|+++|+++++++++..||+|||++|+.|+++|++++ ++..|.++|++|+++|+.||.
T Consensus 81 Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~y~~L~~~G~~f~~ 137 (144)
T cd03568 81 FTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP-SLSLMSDLYKKLKNEGPDLVT 137 (144)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHcCCCCCC
Confidence 999999999988999999999999999999999765 589999999999999999983
No 5
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=100.00 E-value=5.3e-40 Score=311.37 Aligned_cols=136 Identities=40% Similarity=0.756 Sum_probs=129.6
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS-RNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks-~np~vqllALtLLE~cVKNCG~~Fh~eVask 80 (676)
|+.+||||||+.++++||++|++|||+||++..++|||+|+|||||++ +|+++|++||+|||+||||||.+||.+|+++
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask 81 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKK 81 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999985 7999999999999999999999999999999
Q ss_pred HHHHH-HHHHhccC--CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCC
Q 005810 81 NVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFP 138 (676)
Q Consensus 81 ~FLne-LvKLvk~k--~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP 138 (676)
+|+++ |++++.++ ++..||+|||++|+.|+++|++++ +|+.|.++|++|+++||.||
T Consensus 82 ~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~y~~L~~~G~~FP 141 (141)
T cd03565 82 DFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSP-DLTGVVEVYEELKKKGIEFP 141 (141)
T ss_pred HhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCc-cchHHHHHHHHHHHcCCCCC
Confidence 99999 99999754 457999999999999999999875 69999999999999999998
No 6
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=100.00 E-value=1.7e-39 Score=307.35 Aligned_cols=131 Identities=28% Similarity=0.501 Sum_probs=125.4
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++++|+||||+.+.++||++|++|||+||+++.++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~ 81 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFR 81 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-----CCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccC
Q 005810 82 VLHEMVKIARK-----KPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAV 136 (676)
Q Consensus 82 FLneLvKLvk~-----k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~ 136 (676)
|+++|+|++++ .++..||+|||+||+.|+++|+. .+.|.++|++||++|+.
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~~~~~Y~~Lk~~G~i 137 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH----EPKIKEAYDMLKKQGII 137 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHCCCc
Confidence 99999999975 36789999999999999999984 57799999999999975
No 7
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=100.00 E-value=2.2e-37 Score=290.34 Aligned_cols=132 Identities=42% Similarity=0.723 Sum_probs=126.2
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++.+|+||||+.+.++||+.|++|||+||+++.+++||+|+|||||+++|+++|++||+|||+||||||.+||.+|++++
T Consensus 1 ~~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~ 80 (133)
T smart00288 1 VERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKE 80 (133)
T ss_pred ChhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChh-HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005810 82 VLHEMVKIARKKPDTH-VKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (676)
Q Consensus 82 FLneLvKLvk~k~d~~-VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kG 134 (676)
|+++|+++++++++.. ||+||+++|+.|+++|++++ +|+.|.++|++|+++|
T Consensus 81 fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~-~~~~i~~~y~~L~~~g 133 (133)
T smart00288 81 FLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDP-DLSQIVDVYDLLKKKG 133 (133)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHCc
Confidence 9999999999876655 99999999999999999864 6999999999999987
No 8
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=100.00 E-value=3.2e-36 Score=284.21 Aligned_cols=132 Identities=42% Similarity=0.753 Sum_probs=122.6
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++.+|+|||++.+.++||+.|++|||+||+++.+++||+|+|||||+|+|+++|++||+|||+||||||..||.+|++++
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~ 85 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKE 85 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChh---HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005810 82 VLHEMVKIARKKPDTH---VKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (676)
Q Consensus 82 FLneLvKLvk~k~d~~---VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kG 134 (676)
|+++|++|++++.... ||+||+++|+.|+++|++++ .|+.|.++|++||++|
T Consensus 86 fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~-~~~~i~~~y~~Lk~~G 140 (140)
T PF00790_consen 86 FLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDP-ELSLIQDTYKRLKRKG 140 (140)
T ss_dssp HHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTST-TGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCC-CchHHHHHHHHHHHCc
Confidence 9999999998765543 99999999999999998764 6999999999999998
No 9
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=100.00 E-value=3.7e-36 Score=281.67 Aligned_cols=131 Identities=49% Similarity=0.807 Sum_probs=125.6
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
|+++|+|||++.+.++||++|++|||+||+++.+++||+|+|||||+++|+++|++||+|||+||||||++||.+|++++
T Consensus 1 v~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~ 80 (133)
T cd03561 1 VTSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKE 80 (133)
T ss_pred ChHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc--CCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 005810 82 VLHEMVKIARK--KPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLR 132 (676)
Q Consensus 82 FLneLvKLvk~--k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~ 132 (676)
||++|++++++ +++..||+||+++|+.|+..|+++..+++.|.++|++||+
T Consensus 81 fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~~y~~lk~ 133 (133)
T cd03561 81 FLLELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDLPGIEDAYKLLKR 133 (133)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHhC
Confidence 99999999986 6889999999999999999999864569999999999984
No 10
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-34 Score=305.93 Aligned_cols=265 Identities=25% Similarity=0.383 Sum_probs=198.6
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++.+|+|||++.++.+||.+||.|||+|+++++++|+++|+|+|||.++++||+|+||+||++||+|||++||+||++++
T Consensus 9 ~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~ 88 (462)
T KOG2199|consen 9 FEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRD 88 (462)
T ss_pred HHHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCCCC--CCCCC----C-----
Q 005810 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERS--APVFT----P----- 150 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~~e~~--~pift----P----- 150 (676)
|.++|.+|+.++.+.+|++|+..++.+|.+.|+.|+ .+..|.++|+.||+.||.|+....-. ..+-+ .
T Consensus 89 F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp-~lsLi~~l~~klk~~g~~f~~~~~k~~k~a~~~~~v~~k~EeE 167 (462)
T KOG2199|consen 89 FTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP-SLSLISALYKKLKEEGITFLVAGSKPEKHAMSTNTVSSKQEEE 167 (462)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHcCCCcccCCCchhHHHhhcccccccccHH
Confidence 999999999988999999999999999999999886 48999999999999999997653210 00000 0
Q ss_pred --------------CC-----CCCCCCCCCC----------CCCc--hhh------hHHHhhhccC--------------
Q 005810 151 --------------PQ-----THPLTSYPQN----------FRNP--EHQ------QEAAEASAES-------------- 179 (676)
Q Consensus 151 --------------p~-----t~p~S~~P~~----------lr~a--~~~------q~~ae~s~~~-------------- 179 (676)
.+ +...+.||.. +.+. .++ -+++|.....
T Consensus 168 diaKAi~lSL~E~~~Q~k~a~~~tst~yPs~qk~nqapa~~l~s~~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~ 247 (462)
T KOG2199|consen 168 DIAKAIELSLKEQEKQKKLAETETSTLYPSHQKQNQAPASQLNSQTVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSD 247 (462)
T ss_pred HHHHHHHhhHHHHhhchhhccCCccccCccccccccCchhhccCCccchhhhhhhcccccCCCccceecCcEEEEcccCC
Confidence 00 0000112210 0000 000 0011100000
Q ss_pred -----------------CCCC-----CCHHHHH-----------HHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHH
Q 005810 180 -----------------EFPT-----LSLTEIQ-----------NARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQC 226 (676)
Q Consensus 180 -----------------E~~~-----~slsELe-----------~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qC 226 (676)
.+.+ ...++++ .....++-|-.+|.+.+|.+.. .|++-|.+|+..|
T Consensus 248 ~~WWKG~~~~~~GlFPsnfVT~~le~~~~ee~~~~~~~~E~~vfi~e~~iDrlL~~L~~~dPtd~~-~D~~~l~~le~~~ 326 (462)
T KOG2199|consen 248 PNWWKGENHRGIGLFPSNFVTADLEEPKIEEQEQKQKNKEAIVFIDEDKIDRLLQVLHEADPTDEV-QDDDDLLDLEAAV 326 (462)
T ss_pred cchhccccCCcccccchhhhhhhhcccchhhhhhhhcCcceeeeccHHHHHHHHHHHhhcCCCCcc-CCCHHHHHHHHHH
Confidence 0000 0111111 1234556666788888887554 4566678899999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHhhhhHHHHHHHHHHHhhhcCC
Q 005810 227 RTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASGK 270 (676)
Q Consensus 227 Rsmq~rI~rLIq~t~DEelL~eLL~lNDeLn~vL~rYE~l~~g~ 270 (676)
..|++.|-+.|+.++-+. ++|+++|..|..||..|+.+....
T Consensus 327 ~~mgPlid~~Le~idrk~--~eL~~Ln~~l~~Al~lY~kLm~~~ 368 (462)
T KOG2199|consen 327 HQMGPLIDRKLEKIDRKH--EELSQLNVKLLDALRLYNKLMNEA 368 (462)
T ss_pred HHhhhHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999885332 457899999999999999987655
No 11
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.92 E-value=8.7e-25 Score=199.04 Aligned_cols=109 Identities=40% Similarity=0.708 Sum_probs=102.2
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++.+|++||++.+.++||..|++|||+++..++++++++++|+|||+++|+++++.||+|||+||||||++||.+|+++.
T Consensus 1 ~~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~ 80 (115)
T cd00197 1 FEKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASND 80 (115)
T ss_pred ChHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhH
Confidence 46899999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-----cCCChhHHHHHHHHHHHHH
Q 005810 82 VLHEMVKIAR-----KKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 82 FLneLvKLvk-----~k~d~~VkeKILeLIq~Wa 110 (676)
|+.+|++... ...+..||+|+++||+.|+
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 81 FAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 9999987522 2357899999999999997
No 12
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.8e-22 Score=226.67 Aligned_cols=146 Identities=35% Similarity=0.609 Sum_probs=137.7
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHH
Q 005810 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNV 82 (676)
Q Consensus 3 ~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~F 82 (676)
..+|++||++.+-+.||..|++|||+|++....+|+++|.|+|||.|.|+++++.+|.|+|.||||||..||.+|++++|
T Consensus 10 ~~l~~~at~~~~~~~~~e~~~e~~d~ir~~~~~~k~slr~~~~~i~h~np~~~~~~~~~~d~cvkn~G~gv~~ei~tre~ 89 (634)
T KOG1818|consen 10 KRLIEKATSETLGSGDWEAILEISDMIRSGGVPPKPSLRGIKKRIDHENPNVQLFTLKLTDHCVKNCGHGVHCEIATREF 89 (634)
T ss_pred HhhhhhhhhhhhcCcchhhhhhHHHHHHhcCCCCchhHHHHHHHHhccCCCcccchhhhHHHHHhcCCcchhHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC-CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 005810 83 LHEMVKIARKK-PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTP 150 (676)
Q Consensus 83 LneLvKLvk~k-~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~~e~~~piftP 150 (676)
++.|+.++... ++..|+.|+|++|+.|+.+|++. ..|..+.++|+.||..|+.||+.++.++ +|..
T Consensus 90 m~~~~~~l~~~~~~e~v~~~~l~~~q~wa~af~~~-~~~~~v~~t~~~lk~~g~~Fpe~~e~d~-mf~~ 156 (634)
T KOG1818|consen 90 MDLLKSLLESQRIHEEVKNKILELIQNWAAAFRNS-SKYSYVLDTYQKLKGGGHVFPELDENDA-MFDA 156 (634)
T ss_pred HHHHHhhhccccccchHHHHHHHHHHHHHHHccCc-hHHHHHHHHHHHHhcCCccccccccchh-hhcc
Confidence 99999998754 89999999999999999999987 6799999999999999999999887655 7743
No 13
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=99.81 E-value=6.4e-20 Score=164.49 Aligned_cols=93 Identities=27% Similarity=0.502 Sum_probs=84.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHhhhhHHHHHH
Q 005810 180 EFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRL 259 (676)
Q Consensus 180 E~~~~slsELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t~DEelL~eLL~lNDeLn~v 259 (676)
++.+++.+||++|+++++||+|||..++|+.....+.|+|+|||++||++|++|++||+.+.||++|++||++||+|++|
T Consensus 4 e~~~k~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~dee~l~~lL~~ND~L~~~ 83 (100)
T PF03127_consen 4 EQVSKRRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEVEDEELLGELLQANDELNQA 83 (100)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH
Confidence 44445578999999999999999999999888777779999999999999999999999999888999999999999999
Q ss_pred HHHHHhhhcCCcc
Q 005810 260 LAKHESFASGKSA 272 (676)
Q Consensus 260 L~rYE~l~~g~~~ 272 (676)
|.+|+++++|+..
T Consensus 84 l~~Y~~l~~~~~~ 96 (100)
T PF03127_consen 84 LERYDRLVKGQQR 96 (100)
T ss_dssp HHHHHHHHCCC--
T ss_pred HHHHHHHHcCccc
Confidence 9999999999875
No 14
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.19 E-value=1.2e-05 Score=75.45 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=84.9
Q ss_pred ChHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810 1 MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (676)
Q Consensus 1 ~v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask 80 (676)
|--.+|.+||++.-..+--.+..|||++...+.+...+++..|-|||++++++|-+-||.||+.|+.++...|.+++-+.
T Consensus 1 ~~~~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 1 MRRSLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred CcHHHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 44679999999988777777888999999998888999999999999999999999999999999999988998877543
Q ss_pred HHHHHHHHHhc--cCCC--------hhHHHHHHHHHHH
Q 005810 81 NVLHEMVKIAR--KKPD--------THVKEKILILIDT 108 (676)
Q Consensus 81 ~FLneLvKLvk--~k~d--------~~VkeKILeLIq~ 108 (676)
...++.+.. ..+| ..||+++.|+|..
T Consensus 81 --~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 81 --SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred --HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 333333322 1122 3688888877754
No 15
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=98.14 E-value=1.8e-05 Score=73.64 Aligned_cols=105 Identities=23% Similarity=0.310 Sum_probs=79.9
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHhcccchhhhhhc
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI---GSRNSKVQLLALTLLETIIKNCGDIVHMHVA 78 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRL---ks~np~vqllALtLLE~cVKNCG~~Fh~eVa 78 (676)
++.+|.+||+....++.-....|||+.-... ....+.++.|.||| +.++.++.+-||.||+.|++||...|-..+
T Consensus 4 ~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~- 81 (125)
T PF01417_consen 4 LELKVREATSNDPWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDEL- 81 (125)
T ss_dssp HHHHHHHHTSSSSSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHH-
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHH-
Confidence 4678999999987777777888888887666 78999999999999 788999999999999999999999888877
Q ss_pred chHHHHHHHHHhc-----cC-CC--hhHHHHHHHHHHHH
Q 005810 79 EKNVLHEMVKIAR-----KK-PD--THVKEKILILIDTW 109 (676)
Q Consensus 79 sk~FLneLvKLvk-----~k-~d--~~VkeKILeLIq~W 109 (676)
++-++.|+.+.. ++ .+ ..||+|+.+++..-
T Consensus 82 -~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 82 -RDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp -HHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 233444444422 11 12 26999888887654
No 16
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=97.87 E-value=3.6e-05 Score=70.19 Aligned_cols=104 Identities=22% Similarity=0.336 Sum_probs=78.9
Q ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHH
Q 005810 5 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLH 84 (676)
Q Consensus 5 LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLn 84 (676)
.+++.|.-. ..-..|-.+...+......+++.+.+|.++|+...+..-|.+|-|+|.+++||+.+....+.. .|.+
T Consensus 7 ~l~~L~~~~---~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~-~~~~ 82 (114)
T cd03562 7 LLEKLTFNK---NSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSE-FLVP 82 (114)
T ss_pred HHHHHHcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHH-HHHH
Confidence 344444433 344556667777666667899999999999999999999999999999999999987765533 3333
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHh
Q 005810 85 EMVKIARKKPDTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 85 eLvKLvk~k~d~~VkeKILeLIq~Wa~aF 113 (676)
-+...+. +.+..+|+|+..|+..|.+.+
T Consensus 83 ~f~~~~~-~~~~~~r~kl~rl~~iW~~~~ 110 (114)
T cd03562 83 LFLDAYE-KVDEKTRKKLERLLNIWEERF 110 (114)
T ss_pred HHHHHHH-hCCHHHHHHHHHHHHHccCCC
Confidence 3433333 678999999999999998764
No 17
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=97.70 E-value=0.00037 Score=65.64 Aligned_cols=106 Identities=25% Similarity=0.266 Sum_probs=81.3
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhcccchhhhhhcc
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS--RNSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks--~np~vqllALtLLE~cVKNCG~~Fh~eVas 79 (676)
.+.+|..|||...-+|.-..+-+||+.-.. .....+.++.|.|||.. ++-+..+-||+|||.|++|+.++|-.++.+
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~-~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYN-YVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 367899999998888888889999998655 35678999999999965 588899999999999999999888877743
Q ss_pred hHHHHHHHHHh-----cc-CCC--hhHHHHHHHHHHHHH
Q 005810 80 KNVLHEMVKIA-----RK-KPD--THVKEKILILIDTWQ 110 (676)
Q Consensus 80 k~FLneLvKLv-----k~-k~d--~~VkeKILeLIq~Wa 110 (676)
. +..|..|- .. ..| ..||+|+.+++..-.
T Consensus 81 ~--~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~ 117 (123)
T cd03571 81 N--LYIIRTLKDFQYIDENGKDQGINVREKAKEILELLE 117 (123)
T ss_pred h--HHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhC
Confidence 3 33333332 11 122 479999888876543
No 18
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=97.65 E-value=0.00064 Score=63.43 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=80.8
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSR-NSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~-np~vqllALtLLE~cVKNCG~~Fh~eVask 80 (676)
++..|.+||+.....++-..+-+|+......+....+++++|.|||... +-.+++-||.||+.|++|+...|-.++-+.
T Consensus 3 ~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~~~ 82 (127)
T smart00273 3 LEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEALRN 82 (127)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 4678999999999999999999999999888788999999999999876 999999999999999999987665444221
Q ss_pred -HHHHHHHHHhc--cC---CChhHHHHHHHHHHHH
Q 005810 81 -NVLHEMVKIAR--KK---PDTHVKEKILILIDTW 109 (676)
Q Consensus 81 -~FLneLvKLvk--~k---~d~~VkeKILeLIq~W 109 (676)
..+.+|.+.-. .+ ....||+++..|+..-
T Consensus 83 ~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l 117 (127)
T smart00273 83 RNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERL 117 (127)
T ss_pred hHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHH
Confidence 12222322211 11 1235777777666544
No 19
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=97.26 E-value=0.0015 Score=60.33 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=70.5
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcc
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVas 79 (676)
++..|.|||+.....|+-..+-+|......+.....+++.+|.+|+..+|..+++-||.||..|++++.+.|-.++..
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 356899999999999999999999999988788999999999999999999999999999999999998887766544
No 20
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0026 Score=71.26 Aligned_cols=135 Identities=14% Similarity=0.269 Sum_probs=110.5
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcc--
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAE-- 79 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVas-- 79 (676)
|..||+++|...-.+-|-....+|-.+++.+.+..+-+.+.|..-+.+....+-+++|-++|.|.... +.|+..|.+
T Consensus 8 l~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs-~~FR~lii~n~ 86 (661)
T KOG2374|consen 8 LIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRS-KLFRTLIIENL 86 (661)
T ss_pred HHHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh-HHHHHHHHhCH
Confidence 56799999999999999999999999999988889999999999999999999999999999999987 688888765
Q ss_pred hHHHHHHHHHhccC--C-----ChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH-hccCCCCC
Q 005810 80 KNVLHEMVKIARKK--P-----DTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLR-AGAVFPQR 140 (676)
Q Consensus 80 k~FLneLvKLvk~k--~-----d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~-kGi~FP~~ 140 (676)
.+||+-++.-=... + -..+|.++++.|..|.+.|.-+ |+.+.-.|..||. +-+.||..
T Consensus 87 ~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~---yk~l~lg~~~Lk~tkkvdf~d~ 152 (661)
T KOG2374|consen 87 DEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFH---YKELRLGFDYLKNTKKVDFPDL 152 (661)
T ss_pred HHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHhccccccCcch
Confidence 24444433211111 1 1278999999999999999863 8888999999986 66889854
No 21
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0029 Score=68.48 Aligned_cols=109 Identities=25% Similarity=0.227 Sum_probs=82.4
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIG--SRNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (676)
Q Consensus 3 ~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLk--s~np~vqllALtLLE~cVKNCG~~Fh~eVask 80 (676)
+..|-.||+...-++.-.++.||++.--.- ..-.|.+-.|.||++ .+|=+.++-||+|||+||+|+.++|-.++-..
T Consensus 23 e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~-~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv~~~~ren 101 (336)
T KOG2056|consen 23 ELKVRDATSNDPWGPSGTLMAEIAQATYNF-VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERVVDETREN 101 (336)
T ss_pred HHHHHhccccccCCCchHHHHHHHHHhcCH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHHHHHHHhh
Confidence 456889999999899999999999875433 457899999999996 47888999999999999999988877766444
Q ss_pred HHHHHHHHHh---c-cCCC--hhHHHHHHHHHHHHHHH
Q 005810 81 NVLHEMVKIA---R-KKPD--THVKEKILILIDTWQEA 112 (676)
Q Consensus 81 ~FLneLvKLv---k-~k~d--~~VkeKILeLIq~Wa~a 112 (676)
-++-++.+=+ . ...+ ..||+|+.+++....+.
T Consensus 102 ~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~ 139 (336)
T KOG2056|consen 102 IYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDD 139 (336)
T ss_pred hHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccH
Confidence 3433332222 1 1222 47999999999877653
No 22
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.034 Score=63.44 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=73.9
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSR-NSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~-np~vqllALtLLE~cVKNCG~~Fh~eVask 80 (676)
++..|-|||+.....++-..+-+|--.++..+.....++.+|-+||++. |--|++-||.|+.-+++.+.++|+.++...
T Consensus 24 l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAlKsLIliH~ll~~G~~~f~~~l~~~ 103 (491)
T KOG0251|consen 24 LEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVALKALILIHRLLKEGDPSFEQELLSR 103 (491)
T ss_pred HHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999875 999999999999999999999999888775
Q ss_pred H
Q 005810 81 N 81 (676)
Q Consensus 81 ~ 81 (676)
-
T Consensus 104 ~ 104 (491)
T KOG0251|consen 104 N 104 (491)
T ss_pred c
Confidence 5
No 23
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=96.06 E-value=0.017 Score=53.08 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhc---cCCCh
Q 005810 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIAR---KKPDT 96 (676)
Q Consensus 20 ~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk---~k~d~ 96 (676)
..|-.+...+-.....+++.+..|.++++...+..-+..|-|++.+++||...+-..+ ...|...+..++. ...+.
T Consensus 14 ~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 92 (121)
T smart00582 14 ESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEF-GDELGPVFQDALRDVLGAAND 92 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHhCCH
Confidence 3344444443333346789999999999887777788899999999999976642222 2244444433332 23447
Q ss_pred hHHHHHHHHHHHHHHH
Q 005810 97 HVKEKILILIDTWQEA 112 (676)
Q Consensus 97 ~VkeKILeLIq~Wa~a 112 (676)
.+|+||+.++..|.+.
T Consensus 93 ~~~~ki~kll~iW~~~ 108 (121)
T smart00582 93 ETKKKIRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8999999999999983
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.62 E-value=0.86 Score=38.49 Aligned_cols=87 Identities=15% Similarity=0.249 Sum_probs=68.5
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
|..||+...++ +||..-.+.|..+..- +-.+++..|.+.+++.++.+...|+.-|..+ .+++
T Consensus 1 i~~L~~~l~~~----~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------------~~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQND----PDPQVRAEAARALGEL--GDPEAIPALIELLKDEDPMVRRAAARALGRI------------GDPE 62 (88)
T ss_dssp HHHHHHHHHTS----SSHHHHHHHHHHHHCC--THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC------------HHHH
T ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHHc--CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CCHH
Confidence 35667766444 6888888899988854 4679999999999999999999999888743 4678
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHH
Q 005810 82 VLHEMVKIARKKPDTHVKEKILILI 106 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKILeLI 106 (676)
.+..|++++.+..+..||..++..|
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 8888999888766778888777654
No 25
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=92.06 E-value=0.65 Score=50.46 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=63.8
Q ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 6 VDRATSDMLIGPDWAMNIEICDMLNHD-PGQAKDVVKGIKKRIGS---RNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 6 IekATse~l~~pDW~lilEICD~Ins~-~~~aKeAaRaIrKRLks---~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
|..||++.--++-=.++-|||+.-... -+.--|....|-.|+-. .+=+.++.+|.||++|+||+.++|-.+. ++
T Consensus 28 VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER~VqeA--RE 105 (499)
T KOG2057|consen 28 VREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSERFVQEA--RE 105 (499)
T ss_pred HHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHH--HH
Confidence 444555533333334667777764441 12234555566666532 3456788999999999999999998764 45
Q ss_pred HHHHHHHHhccC------CC--hhHHHHHHHHHHH
Q 005810 82 VLHEMVKIARKK------PD--THVKEKILILIDT 108 (676)
Q Consensus 82 FLneLvKLvk~k------~d--~~VkeKILeLIq~ 108 (676)
-.-+|++|-.-+ .| ..||.|+.++|.-
T Consensus 106 h~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEf 140 (499)
T KOG2057|consen 106 HAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEF 140 (499)
T ss_pred HHHHHHhhhhccchhhhCccccccHHHHHHHHHHH
Confidence 566777764321 22 3799999998863
No 26
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=91.16 E-value=0.67 Score=48.50 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=60.3
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccchhhhhhc
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSR-NSKVQLLALTLLETIIKNCGDIVHMHVA 78 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~-np~vqllALtLLE~cVKNCG~~Fh~eVa 78 (676)
++..|-|||+....-++-..+-+|.-.... +....+++.+|.+|+... +..|++-||.|+..|++-+...|-.++.
T Consensus 4 l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 4 LEKAVIKATSHDEAPPKEKHVREILSATSS-PESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp HHHHHHHHT-SSS---HHHHHHHHHHHCST-TS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-CccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 467899999998888898889888888777 788999999999999875 9999999999999999988666665544
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.52 E-value=2.4 Score=42.52 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc---chhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG---DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG---~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
.+-....|..-++++|+.+-..++..|..++.+++ ..+.....-+.++..|.+.+.+ .+++||+-..+++..+...
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHH
Confidence 34447888888999999999999999999999998 3333222123444455555554 5789999999999999888
Q ss_pred hC
Q 005810 113 FG 114 (676)
Q Consensus 113 F~ 114 (676)
|+
T Consensus 208 ~~ 209 (228)
T PF12348_consen 208 FP 209 (228)
T ss_dssp H-
T ss_pred CC
Confidence 76
No 28
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=1 Score=49.45 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCCC--cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChh
Q 005810 20 AMNIEICDMLNHDPG--QAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH 97 (676)
Q Consensus 20 ~lilEICD~Ins~~~--~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~ 97 (676)
+-+.++|+-|..--+ .-.-...+|. .|++.+..+-.+|..+|-+|+.|- .+.+.+|....|+..|.++++...+.+
T Consensus 105 d~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNN-P~~Qe~v~E~~~L~~Ll~~ls~~~~~~ 182 (342)
T KOG2160|consen 105 DNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNN-PKSQEQVIELGALSKLLKILSSDDPNT 182 (342)
T ss_pred HHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHcccHHHHHHHHccCCCch
Confidence 345556665543211 1112333344 899999999999999999999997 688888999999999999999777889
Q ss_pred HHHHHHHHHHHHHHHhC
Q 005810 98 VKEKILILIDTWQEAFG 114 (676)
Q Consensus 98 VkeKILeLIq~Wa~aF~ 114 (676)
||.|+|..|-..=..|.
T Consensus 183 ~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 183 VRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999888766655
No 29
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.19 E-value=3.5 Score=35.90 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 005810 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDT 108 (676)
Q Consensus 38 eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~ 108 (676)
+++..|.+-|.+.+++++..|+..|..+..++.. ....+.+..++..|++++... +..|++.++.+|..
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~ 117 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSN 117 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 6677888888999999999999999999998753 333444567899999988764 77899988887764
No 30
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=86.89 E-value=5.6 Score=39.19 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHH
Q 005810 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVK 99 (676)
Q Consensus 20 ~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~Vk 99 (676)
.++.-+||++-+-+.-...-+..|.++|++.++.|-..||.+|--|+.+.=-++.. .++.++.+++.. .+++||
T Consensus 7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~-----~l~~~~l~~l~D-~~~~Ir 80 (178)
T PF12717_consen 7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG-----QLFSRILKLLVD-ENPEIR 80 (178)
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh-----hhhHHHHHHHcC-CCHHHH
Confidence 35778999999988888889999999999999999999999999999997555543 335666666644 578999
Q ss_pred HHHHHHHHHHHHHh
Q 005810 100 EKILILIDTWQEAF 113 (676)
Q Consensus 100 eKILeLIq~Wa~aF 113 (676)
+-+...+.++....
T Consensus 81 ~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 81 SLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998763
No 31
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=86.13 E-value=11 Score=34.52 Aligned_cols=104 Identities=10% Similarity=0.052 Sum_probs=67.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCH-----------HHHHHHHHHHHHHHhccc
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNS-----------KVQLLALTLLETIIKNCG 70 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np-----------~vqllALtLLE~cVKNCG 70 (676)
+++||++.|+.... .|-..+-.+.-.- +.-..+.+-+..|..|.....+ .++.+.+.+|..-|.|+.
T Consensus 10 l~~Li~~L~~~~~~-~d~~f~~~Fllty-r~F~tp~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~rv~~~l~~Wv~~~~ 87 (127)
T smart00229 10 LEKLIEHLTEAFDK-ADPFFVETFLLTY-RSFITTQELLQLLLYRYNAIPPESWVERKVNPLRVKNRVLNILRHWVENYW 87 (127)
T ss_pred HHHHHHHHcCCCcC-CCHHHHHHHHHHh-hhhCCHHHHHHHHHHHhCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHCC
Confidence 57899999998653 3422222221111 2335678888888888875333 377888999999999998
Q ss_pred chhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHH
Q 005810 71 DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILID 107 (676)
Q Consensus 71 ~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq 107 (676)
..|...-.-.++|.++.+.+....-....+++.+++.
T Consensus 88 ~dF~~~~~l~~~l~~f~~~~~~~~~~~~~~~l~~~~~ 124 (127)
T smart00229 88 QDFEDDPKLILRLLEFLDLVDQEKGPGLVTSLQELLQ 124 (127)
T ss_pred cccccCHHHHHHHHHHHHHHhhCcCCCHHHHHHHHHH
Confidence 8888775556667776666544333455666666554
No 32
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=83.86 E-value=3.4 Score=49.62 Aligned_cols=22 Identities=5% Similarity=-0.001 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 005810 218 VIVDLVDQCRTYKQRVVHLVNS 239 (676)
Q Consensus 218 lIqEL~~qCRsmq~rI~rLIq~ 239 (676)
+=-.++-+|+.||-.+..+|..
T Consensus 322 ldfRlhlR~E~mr~gL~~~l~~ 343 (1102)
T KOG1924|consen 322 LDFRLHLRSEFMRDGLHKYLPD 343 (1102)
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 3356778888888888888764
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=82.75 E-value=6.4 Score=39.50 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=63.1
Q ss_pred CCCcCHHHHH----HHHHHHhCC--CCcHHHH---HH----HHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810 14 LIGPDWAMNI----EICDMLNHD--PGQAKDV---VK----GIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (676)
Q Consensus 14 l~~pDW~lil----EICD~Ins~--~~~aKeA---aR----aIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask 80 (676)
..+.||..-. .|-.+++.. .....+. +| .|.+.+.+.+..+...|+.+|..|...+|..|... -.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--AD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HH
Confidence 3567998744 444455555 2333333 33 56678888899999999999999999999998765 45
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh
Q 005810 81 NVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 81 ~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF 113 (676)
.|+..|.+++..+ ...|++.+...|..+....
T Consensus 94 ~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 94 ILLPPLLKKLGDS-KKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHC
Confidence 7888888877663 3579999999999887754
No 34
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=78.78 E-value=10 Score=31.92 Aligned_cols=58 Identities=9% Similarity=0.212 Sum_probs=46.6
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 40 VKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 40 aRaIrKRL-ks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
+..|.+.| +++++.+...|+.+|. ++.+.+.+..|+++++. .+..||..++..|..-+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~------------~~~~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG------------ELGDPEAIPALIELLKD-EDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH------------CCTHHHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH------------HcCCHhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC
Confidence 35678888 8899999999998887 44566889999999854 67899999988877543
No 35
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=76.96 E-value=31 Score=31.05 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=57.1
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHHHh
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSR--------------NSKVQLLALTLLETIIK 67 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~--------------np~vqllALtLLE~cVK 67 (676)
+.+||+++|+... ..|-..+-.+.-.- +.-..+.+.+..|..|.... ...++++.+.+|..-|+
T Consensus 2 l~~Li~~L~~~~~-~~d~~f~~~FllTy-rsF~s~~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~Wv~ 79 (122)
T cd06224 2 LEALIEHLTSTFD-MPDPSFVSTFLLTY-RSFTTPTELLEKLIERYEIAPPENLEYNDWDKKKSKPIRLRVLNVLRTWVE 79 (122)
T ss_pred HHHHHHHHcCCCc-cccHHHHHHHHHHh-hhhCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999976 22333333222222 23345788888888888743 24468888999999999
Q ss_pred cccchhhhhhcchHHHHHHHHHhc
Q 005810 68 NCGDIVHMHVAEKNVLHEMVKIAR 91 (676)
Q Consensus 68 NCG~~Fh~eVask~FLneLvKLvk 91 (676)
+|...|+ .+..++..|...+.
T Consensus 80 ~~~~df~---~d~~l~~~l~~F~~ 100 (122)
T cd06224 80 NYPYDFF---DDEELLELLEEFLN 100 (122)
T ss_pred hCCCccc---ccHHHHHHHHHHHH
Confidence 9999886 45556666665544
No 36
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=74.86 E-value=19 Score=35.38 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRI----GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 36 aKeAaRaIrKRL----ks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
.+.++..++.|| +++++..-+.++.|+...+.+||...-.+- ...|+..|.+++.+..+..+++-++..+..--.
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-GSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 466666666665 578899999999999999999954333232 368999999999886667777766666655544
Q ss_pred H
Q 005810 112 A 112 (676)
Q Consensus 112 a 112 (676)
.
T Consensus 98 ~ 98 (165)
T PF08167_consen 98 L 98 (165)
T ss_pred H
Confidence 3
No 37
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=72.73 E-value=10 Score=31.23 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcccchhhhhhcchHH---HHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 57 LALTLLETIIKNCGDIVHMHVAEKNV---LHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 57 lALtLLE~cVKNCG~~Fh~eVask~F---LneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
.-|-|++-+++||-.+-..++. +.| |.++..-+....+.++++|+..+|..|.+
T Consensus 3 ~~lYl~ndI~q~sk~k~~~~f~-~~F~~~l~~~~~~~~~~~~~~~~~kv~rll~iW~~ 59 (64)
T PF04818_consen 3 ALLYLANDILQNSKRKNPDEFA-PAFSPVLPDAFAHAYKNVDPEVRKKVQRLLNIWEE 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTHCHH-HHHHCCHHHHHHHHCCCS-HHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHhhhcChHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 4467889999998533100111 222 33322223334589999999999999986
No 38
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=71.99 E-value=23 Score=42.92 Aligned_cols=8 Identities=63% Similarity=1.414 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 005810 477 GGSLPPPP 484 (676)
Q Consensus 477 ~~~~pp~p 484 (676)
|+.-||||
T Consensus 538 G~g~pppP 545 (1102)
T KOG1924|consen 538 GTGPPPPP 545 (1102)
T ss_pred CCCCCCCC
Confidence 33444544
No 39
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=71.14 E-value=14 Score=37.82 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=48.6
Q ss_pred CCcCHHHHHHHHHH-HhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhc-----chHHHHHHHH
Q 005810 15 IGPDWAMNIEICDM-LNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVA-----EKNVLHEMVK 88 (676)
Q Consensus 15 ~~pDW~lilEICD~-Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVa-----sk~FLneLvK 88 (676)
..+||=.-+.+|=+ .|++..++-.|.+.|.+.+-+. ...=|+...++||.+|+..=+ .++++.++..
T Consensus 35 ~~e~lf~ELsFCILTANsSA~~~~~~q~~lG~gfly~-------~~eEL~e~Lk~~g~Rf~n~raeyIVeaR~~~~~lk~ 107 (210)
T COG1059 35 TKEDLFKELSFCILTANSSATMGLRAQNELGDGFLYL-------SEEELREKLKEVGYRFYNVRAEYIVEAREKFDDLKI 107 (210)
T ss_pred cHHHHHHHHHHHhccccchHHHHHHHHHHhccccccC-------CHHHHHHHHHHhcchhcccchHHHHHHHHHHHHHHH
Confidence 34566555555654 3444444455555555555444 344466777899999997533 3666777777
Q ss_pred HhccCCChhH-HHHHHH
Q 005810 89 IARKKPDTHV-KEKILI 104 (676)
Q Consensus 89 Lvk~k~d~~V-keKILe 104 (676)
+++...+..| |+.+++
T Consensus 108 ~v~~~~~~~vaRE~Lv~ 124 (210)
T COG1059 108 IVKADENEKVARELLVE 124 (210)
T ss_pred HHhcCcchHHHHHHHHH
Confidence 7775555554 444443
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=70.83 E-value=13 Score=32.24 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
.+..|.+.|++.+..+...|+..|..+.++.. .....+.+.+++..|.+++.. .+.+|+..++..+..+...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccC
Confidence 56778888888889999999999999998853 333345556889999998886 4789999999998888643
No 41
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=69.85 E-value=60 Score=35.21 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=60.1
Q ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCC------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhh
Q 005810 4 SMVDRATSDMLIGPDWAMNIEICDMLNHDPG------QAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHV 77 (676)
Q Consensus 4 ~LIekATse~l~~pDW~lilEICD~Ins~~~------~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eV 77 (676)
+.|+..++-+ ..---.....|++++.+.-- .....+.+|.|-||.+..+++.+|+.++..++-..|.....+-
T Consensus 47 ~~Id~l~eK~-~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKS-SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcC-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 3444444433 22233344455555554331 1233466677778888889999999999999888652222222
Q ss_pred cchHHHHHHHHHhccCC-ChhHHHHHHHHHHHH
Q 005810 78 AEKNVLHEMVKIARKKP-DTHVKEKILILIDTW 109 (676)
Q Consensus 78 ask~FLneLvKLvk~k~-d~~VkeKILeLIq~W 109 (676)
.-+++..-|.+++.... ...+|..++..+-.-
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAIC 158 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 22356666777777543 346666666544433
No 42
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=68.30 E-value=19 Score=35.91 Aligned_cols=84 Identities=15% Similarity=0.285 Sum_probs=59.2
Q ss_pred HHHHHhCCCCcH----HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhH
Q 005810 25 ICDMLNHDPGQA----KDVVKGIKKRIGS--RNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHV 98 (676)
Q Consensus 25 ICD~Ins~~~~a----KeAaRaIrKRLks--~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~V 98 (676)
++++....-... ..-++-|...+.. .++.+..+||.+||.+|.|. ...+..|..+==+..|++.+.. .+.++
T Consensus 41 f~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S-~~ly~~V~~evt~~~Li~hLq~-~~~~i 118 (160)
T PF11841_consen 41 FVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNS-PKLYQLVEQEVTLESLIRHLQV-SNQEI 118 (160)
T ss_pred HHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCC-HHHHHHHhccCCHHHHHHHHHc-CCHHH
Confidence 555555543332 2233334444432 37999999999999999997 4556678777667778888777 78899
Q ss_pred HHHHHHHHHHHH
Q 005810 99 KEKILILIDTWQ 110 (676)
Q Consensus 99 keKILeLIq~Wa 110 (676)
+.+.+.||-..-
T Consensus 119 q~naiaLinAL~ 130 (160)
T PF11841_consen 119 QTNAIALINALF 130 (160)
T ss_pred HHHHHHHHHHHH
Confidence 999999997653
No 43
>PRK09687 putative lyase; Provisional
Probab=64.07 E-value=83 Score=33.59 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH---------HH---Hhcccchhh-----hhhcchHHHHHHHHHhccCCChhH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLE---------TI---IKNCGDIVH-----MHVAEKNVLHEMVKIARKKPDTHV 98 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE---------~c---VKNCG~~Fh-----~eVask~FLneLvKLvk~k~d~~V 98 (676)
..+++..|.+.|.+.+..|...|+.-|- .| +++...++. -+|++++++..|.+++....|..|
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhH
Confidence 4466677777777777777666654332 22 222111111 245567777777777775567777
Q ss_pred HHHHHHHHH
Q 005810 99 KEKILILID 107 (676)
Q Consensus 99 keKILeLIq 107 (676)
+.|+++.|.
T Consensus 270 ~~~a~~a~~ 278 (280)
T PRK09687 270 ITKAIDKLK 278 (280)
T ss_pred HHHHHHHHh
Confidence 777776654
No 44
>PF06812 ImpA-rel_N: ImpA-related N-terminal; InterPro: IPR010657 This entry represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=63.32 E-value=28 Score=28.76 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhh
Q 005810 18 DWAMNIEICDMLN-HDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHM 75 (676)
Q Consensus 18 DW~lilEICD~In-s~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~ 75 (676)
||..+.+.|..+- +....-+-|+-.++-+++.....--..+|.+|..|+.+..+..|-
T Consensus 1 DW~~v~~~~~~lL~~~sKDlrv~~~l~~a~~~~~g~~gl~~gl~ll~~ll~~~W~~l~P 59 (62)
T PF06812_consen 1 DWDKVEELALELLSEQSKDLRVAVWLTEALLRLEGLAGLAEGLELLADLLENYWDSLHP 59 (62)
T ss_pred CHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHCCcccCC
Confidence 8999999998765 555567888888888888888888889999999999998887774
No 45
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=62.48 E-value=18 Score=33.18 Aligned_cols=55 Identities=4% Similarity=0.200 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 005810 189 IQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADE 243 (676)
Q Consensus 189 Le~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t~DE 243 (676)
+...+..+++|.+=+......+.+...+..|+.||.+.-.|.++|+++|++.+|.
T Consensus 4 ~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~ 58 (96)
T PF12210_consen 4 CNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEK 58 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888877555544456777788999999999999999999999987544
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=62.25 E-value=18 Score=40.59 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=64.3
Q ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHH
Q 005810 6 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKD-VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLH 84 (676)
Q Consensus 6 IekATse~l~~pDW~lilEICD~Ins~~~~aKe-AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLn 84 (676)
|.+.-++....--..+++.++.+.+..++.... .+..|.+.|...++.|...|+.+|..| +.-...+. .+ -..+..
T Consensus 119 v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~-~~~~~~ 195 (526)
T PF01602_consen 119 VIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SL-IPKLIR 195 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-TH-HHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hh-HHHHHH
Confidence 334433433334456788899999999888777 599999999999999999999999999 22222212 11 123333
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHH
Q 005810 85 EMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 85 eLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
.|.+++ ...++-++.+++.++..+
T Consensus 196 ~L~~~l-~~~~~~~q~~il~~l~~~ 219 (526)
T PF01602_consen 196 ILCQLL-SDPDPWLQIKILRLLRRY 219 (526)
T ss_dssp HHHHHH-TCCSHHHHHHHHHHHTTS
T ss_pred Hhhhcc-cccchHHHHHHHHHHHhc
Confidence 333333 334566666666666644
No 47
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=60.03 E-value=13 Score=43.61 Aligned_cols=75 Identities=24% Similarity=0.384 Sum_probs=60.8
Q ss_pred CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 34 GQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 34 ~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
--++..+-+|-++|....+..-|.++-|||..+||-|.....-+ ++..+..++..+. +.|.+.|.++..++.+|.
T Consensus 36 ~~a~~iv~~iE~hi~kcpp~~kL~~~y~~dsi~knvg~py~~~f-s~~l~a~f~~~~~-~vd~r~r~~l~~~~~tw~ 110 (579)
T KOG2071|consen 36 PFAKSIVSAIEAHIAKCPPSQKLPVMYLLDSIVKNVGSPYTTAF-SRNLVATFICAFT-KVDERTRTSLFKLRATWD 110 (579)
T ss_pred cccHHHHHHHHHHHhhCCcccccchhhhhHHHHhhcCCcchhhh-hhhHHHHHHHHHh-hccccccchhHhhHHhhc
Confidence 45789999999999999999999999999999999998855433 4444444444333 378899999999999999
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=59.76 E-value=63 Score=36.30 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=25.6
Q ss_pred HHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005810 27 DMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETI 65 (676)
Q Consensus 27 D~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~c 65 (676)
.+...+++...-++..|+|-|.+.|+.++.+||..|-.+
T Consensus 68 ~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i 106 (526)
T PF01602_consen 68 LYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI 106 (526)
T ss_dssp HHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh
Confidence 334444444666777788888888887777777655443
No 49
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=58.88 E-value=42 Score=29.03 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=19.7
Q ss_pred ccCCChhHHHHHHHHHHHHHHHh
Q 005810 91 RKKPDTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 91 k~k~d~~VkeKILeLIq~Wa~aF 113 (676)
+++.+++|+..+.+||..|...+
T Consensus 51 rkh~~~~I~~~A~~Li~~WK~~v 73 (75)
T smart00509 51 RKHKNEEIRKLAKKLIKSWKKLV 73 (75)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHh
Confidence 44568999999999999999865
No 50
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=58.19 E-value=2.8e+02 Score=30.78 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc---cchhhhhhcchHHHHHHHHHhccCCChhH
Q 005810 22 NIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNC---GDIVHMHVAEKNVLHEMVKIARKKPDTHV 98 (676)
Q Consensus 22 ilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNC---G~~Fh~eVask~FLneLvKLvk~k~d~~V 98 (676)
|-.+.--|-.....++..|+.=.+-++......=+.=|-|..-.|.|| |..|..++ ..-+++.+..+++. .+...
T Consensus 23 IqtlS~Wli~hkk~a~~IV~~Wl~~~~~~~~~~Kl~llYLaNDVvQnskrk~~ef~~ef-~~v~~~a~~~i~~~-~~~~~ 100 (325)
T KOG2669|consen 23 IQTLSLWLIHHKKHARLIVDVWLKELKKSSVNHKLTLLYLANDVVQNSKRKGPEFVDEF-WPVVLKAFAHIVEE-TDVKC 100 (325)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhccCCCceeeehhhhHHHHHHhhhcCchhHHHH-HHHHHHHHHHHHHh-cchhh
Confidence 333333333333445666666555554321111111345555566666 34555554 33555556555554 34455
Q ss_pred HHHHHHHHHHHHHH
Q 005810 99 KEKILILIDTWQEA 112 (676)
Q Consensus 99 keKILeLIq~Wa~a 112 (676)
|.+|..+|..|.+.
T Consensus 101 k~~l~Rl~nIw~eR 114 (325)
T KOG2669|consen 101 KKKLGRLINIWEER 114 (325)
T ss_pred hHHHHHHHHHHHHh
Confidence 89999999999986
No 51
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=57.85 E-value=75 Score=34.61 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHh-cccchhhhhhcchHHHH-HHHHHhc
Q 005810 40 VKGIKKRIGSRNSKVQLLALTLLETIIK-NCGDIVHMHVAEKNVLH-EMVKIAR 91 (676)
Q Consensus 40 aRaIrKRLks~np~vqllALtLLE~cVK-NCG~~Fh~eVask~FLn-eLvKLvk 91 (676)
+|.|.+-|.+...+.+.-||.||..+|. +.|.--...+..++|-. .|.|++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~ 111 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLT 111 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhc
Confidence 6667777777888899999999999999 88866666666777765 4777764
No 52
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=57.78 E-value=27 Score=31.34 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhcCC
Q 005810 185 SLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTA 241 (676)
Q Consensus 185 slsELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t~ 241 (676)
...|++.+...++-|+-.|+++. .+.+.=...+++|.+.||+.|..+........
T Consensus 24 ~~~E~~~ins~LD~Lns~LD~LE--~rnD~l~~~L~~LLesnrq~R~e~~~~~~~~~ 78 (83)
T PF03670_consen 24 DEEEYAAINSMLDQLNSCLDHLE--QRNDHLHAQLQELLESNRQIRLEFQEQLSKAP 78 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35788888889999999999983 22222345678999999999999988776653
No 53
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=57.72 E-value=8.4 Score=40.84 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc--hhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHH-HHHH
Q 005810 35 QAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD--IVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILID-TWQE 111 (676)
Q Consensus 35 ~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~--~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq-~Wa~ 111 (676)
.+++++++|-.-+..-.....+.++.||+.|...|.. .|..+. .++|++.|. .+++..+..|++-|.+.+. .+.+
T Consensus 38 S~R~~~~~ls~a~~~~~~~~~i~p~~vl~~L~~~l~~~~~i~~e~-~~~y~~~l~-~v~~~Y~~~v~~EV~~A~~~~~ee 115 (254)
T PF06798_consen 38 SPRFVIKILSNALSSDSEEDCINPLDVLNELEEGLKDHPSISEEE-RERYLEFLK-SVRKEYDERVEKEVQEAFYYSYEE 115 (254)
T ss_pred CHhHHHHHHHHHHHhCcccceecHHHHHHHHHHHhhcccccCHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccHH
Confidence 3899999999999887778889999999999999976 455554 457777555 6666666677777766665 5555
Q ss_pred HhC
Q 005810 112 AFG 114 (676)
Q Consensus 112 aF~ 114 (676)
...
T Consensus 116 ~~~ 118 (254)
T PF06798_consen 116 QIQ 118 (254)
T ss_pred HHH
Confidence 433
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.98 E-value=47 Score=40.50 Aligned_cols=89 Identities=12% Similarity=0.195 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc---cchhhhhhcchHHHHHHHHHhccC----
Q 005810 21 MNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNC---GDIVHMHVAEKNVLHEMVKIARKK---- 93 (676)
Q Consensus 21 lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNC---G~~Fh~eVask~FLneLvKLvk~k---- 93 (676)
+++-...+|++.|+....-+-..|++|..++.-|-+-+|.++-.+.+.. =..|.. ....|+..|+.++..+
T Consensus 162 A~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspe 239 (866)
T KOG1062|consen 162 AALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPE 239 (866)
T ss_pred HHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCc
Confidence 3444444566666666666666677888888888888888766666652 224444 3456677776666543
Q ss_pred ------CChhHHHHHHHHHHHHHH
Q 005810 94 ------PDTHVKEKILILIDTWQE 111 (676)
Q Consensus 94 ------~d~~VkeKILeLIq~Wa~ 111 (676)
+|+-++-|||.++.....
T Consensus 240 ydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 240 YDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred cCccCCCchHHHHHHHHHHHHhcC
Confidence 567789999999887653
No 55
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription]
Probab=55.83 E-value=44 Score=36.45 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=22.9
Q ss_pred HhccCCChhHHHHHHHHHHHHHHHhCC
Q 005810 89 IARKKPDTHVKEKILILIDTWQEAFGG 115 (676)
Q Consensus 89 Lvk~k~d~~VkeKILeLIq~Wa~aF~~ 115 (676)
++++.++.+|+.++..||..|...+..
T Consensus 54 ~~Kk~~n~ev~~~ak~Lik~Wkk~~~~ 80 (296)
T KOG1105|consen 54 VLKKHKNEEVRSLAKKLIKSWKKLVDK 80 (296)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhc
Confidence 456678999999999999999988753
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=55.80 E-value=2.8e+02 Score=32.63 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcccchhhhh---hcc------hHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 005810 57 LALTLLETIIKNCGDIVHMH---VAE------KNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAY 127 (676)
Q Consensus 57 lALtLLE~cVKNCG~~Fh~e---Vas------k~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y 127 (676)
-|+..||..+.+-...|-.- ..+ ++.+..+..-+.. =....++|=.++..-...|+. .+..+...|
T Consensus 165 ~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~--l~~~~~~iP~l~~~~~~~~P~---ql~el~~gy 239 (569)
T PRK04778 165 PALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAA--LEQIMEEIPELLKELQTELPD---QLQELKAGY 239 (569)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhH---HHHHHHHHH
Confidence 46677777777766655421 112 2223332221110 014455666777777777864 578899999
Q ss_pred HHHHHhccCCCCC
Q 005810 128 QELLRAGAVFPQR 140 (676)
Q Consensus 128 ~~Lk~kGi~FP~~ 140 (676)
++|+.+||.|+..
T Consensus 240 ~~m~~~gy~~~~~ 252 (569)
T PRK04778 240 RELVEEGYHLDHL 252 (569)
T ss_pred HHHHHcCCCCCCC
Confidence 9999999999854
No 57
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=55.79 E-value=43 Score=32.21 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHH----Hhcc-
Q 005810 22 NIEICDMLNHDPGQAKDVVKGIKKRIGSRNS----KVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK----IARK- 92 (676)
Q Consensus 22 ilEICD~Ins~~~~aKeAaRaIrKRLks~np----~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvK----Lvk~- 92 (676)
+.=||++.+..-...+.....|+.-|..... ......+.++=.++++||..+...=..++.++++.. .+..
T Consensus 107 ~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~~~ 186 (209)
T PF02854_consen 107 IRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYANSK 186 (209)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhh
Confidence 4447888888766666666666665555443 445566777777788899888822334455555443 3333
Q ss_pred ---CCChhHHHHHHHHHH
Q 005810 93 ---KPDTHVKEKILILID 107 (676)
Q Consensus 93 ---k~d~~VkeKILeLIq 107 (676)
..+.+||-.+.++|.
T Consensus 187 ~~~~~~~r~~~~l~~l~~ 204 (209)
T PF02854_consen 187 KDPNLSSRIRFMLEDLIE 204 (209)
T ss_dssp HSSSSSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHH
Confidence 355677777777665
No 58
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=55.59 E-value=2.2e+02 Score=33.56 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcccchhhhhh---c------chHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 005810 57 LALTLLETIIKNCGDIVHMHV---A------EKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAY 127 (676)
Q Consensus 57 lALtLLE~cVKNCG~~Fh~eV---a------sk~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y 127 (676)
.|+.-||..+++-...|..-. . .++.|..+..-+.. =....++|=.++..-...|+. .+..+.+.|
T Consensus 161 ~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~--l~~~~e~IP~l~~~l~~~~P~---ql~eL~~gy 235 (560)
T PF06160_consen 161 PAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDE--LEEIMEDIPKLYKELQKEFPD---QLEELKEGY 235 (560)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHhHH---HHHHHHHHH
Confidence 566777777777766665321 1 13333333322111 125667777788888888875 578899999
Q ss_pred HHHHHhccCCCCC
Q 005810 128 QELLRAGAVFPQR 140 (676)
Q Consensus 128 ~~Lk~kGi~FP~~ 140 (676)
+.|+.+|+.|+..
T Consensus 236 ~~m~~~gy~l~~~ 248 (560)
T PF06160_consen 236 REMEEEGYYLEHL 248 (560)
T ss_pred HHHHHCCCCCCCC
Confidence 9999999999854
No 59
>KOG4508 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.52 E-value=36 Score=38.45 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=52.6
Q ss_pred CcHHHHHHHHHHHhCCCCH----------HHHHHHHHH--------------HHHHHhcccchhhhhhcchHHHHHHHHH
Q 005810 34 GQAKDVVKGIKKRIGSRNS----------KVQLLALTL--------------LETIIKNCGDIVHMHVAEKNVLHEMVKI 89 (676)
Q Consensus 34 ~~aKeAaRaIrKRLks~np----------~vqllALtL--------------LE~cVKNCG~~Fh~eVask~FLneLvKL 89 (676)
.+++.|+..|.|-..+..- ...+.++++ +..-+.|| -.|-.++-++=--|+||||
T Consensus 385 ~Np~~A~e~L~kl~~S~qi~~Y~~~l~nmdmslHSmEvVnrLttav~lp~~fi~~yi~nc-is~ce~~kdkymqnRlVRL 463 (522)
T KOG4508|consen 385 TNPKFAGEFLVKLALSEQIKRYMRLLENMDMSLHSMEVVNRLTTAVILPDKFIQEYIENC-ISFCEHTKDKYMQNRLVRL 463 (522)
T ss_pred cChHHHHHHHHHHhhHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcCCHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHH
Confidence 3578888888777665322 223333332 33345566 4555555555555667776
Q ss_pred hccCCChhHHHHHHHHHHHHHH--HhCCCCCChhHHHHHHHHHHHh
Q 005810 90 ARKKPDTHVKEKILILIDTWQE--AFGGPRARYPQYYAAYQELLRA 133 (676)
Q Consensus 90 vk~k~d~~VkeKILeLIq~Wa~--aF~~~~~~~p~~~~~Y~~Lk~k 133 (676)
+---...-+|+||+.+=+.+.+ +|+-.=++-.....+|+.||..
T Consensus 464 VcvflqsLiRnkIiNV~DlfieVqaFciefsr~REaagLfrllkql 509 (522)
T KOG4508|consen 464 VCVFLQSLIRNKIINVEDLFIEVQAFCIEFSRNREAAGLFRLLKQL 509 (522)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Confidence 5321123566676665544443 3442111233456678888764
No 60
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=54.74 E-value=41 Score=38.87 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=60.9
Q ss_pred cCHHHHHHHHHHHhCCCC--cHHHHHHHHHHHhCCCCHHHHHHH---H----HHHHHHHhcccchhhhhhcchHH-----
Q 005810 17 PDWAMNIEICDMLNHDPG--QAKDVVKGIKKRIGSRNSKVQLLA---L----TLLETIIKNCGDIVHMHVAEKNV----- 82 (676)
Q Consensus 17 pDW~lilEICD~Ins~~~--~aKeAaRaIrKRLks~np~vqllA---L----tLLE~cVKNCG~~Fh~eVask~F----- 82 (676)
.+-+.+|.+|+..++--. -.++||+.|||+|.-.|.=.-+-+ | .|+..|++.-...|-..+..+.|
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~ 264 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDS 264 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhh
Confidence 345567888888887544 468999999999988765444433 1 46667777666666655544333
Q ss_pred -HHHHHHHhccCCChhHH-HHHHHHHHHHHHH
Q 005810 83 -LHEMVKIARKKPDTHVK-EKILILIDTWQEA 112 (676)
Q Consensus 83 -LneLvKLvk~k~d~~Vk-eKILeLIq~Wa~a 112 (676)
++.++.+++.+. .+++ -++.+.+..|...
T Consensus 265 ~~dt~~evl~r~~-l~~~e~~lfeA~lkw~~~ 295 (521)
T KOG2075|consen 265 TRDTYEEVLRRDT-LEAREFRLFEAALKWAEA 295 (521)
T ss_pred HHHHHHHHHhhcc-cchhHHHHHHHHHhhccC
Confidence 445555555443 2344 3788888888764
No 61
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=53.53 E-value=43 Score=29.63 Aligned_cols=56 Identities=9% Similarity=0.237 Sum_probs=34.6
Q ss_pred hhhhhcchHHHHHHHHHhccC----CC----------hhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 005810 73 VHMHVAEKNVLHEMVKIARKK----PD----------THVKEKILILIDTWQEAFGGPRARYPQYYAAYQELL 131 (676)
Q Consensus 73 Fh~eVask~FLneLvKLvk~k----~d----------~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk 131 (676)
|+.-+...++++.|+...... .. ..+|.||+.+|..|-+.+..+ +..-..+++.|+
T Consensus 33 yr~F~tp~~Ll~~L~~ry~~~~~~~~~~~~~~~~~~~~~i~~rv~~~l~~Wi~~~~~d---f~~~~~l~~~l~ 102 (104)
T PF00618_consen 33 YRSFTTPEELLDKLIQRYNIPPPNGLSQDESWDQDSQEPIRLRVLNVLKYWIENYPDD---FRDDPELLEKLK 102 (104)
T ss_dssp HHHCS-HHHHHHHHHHHHT---SSS-HHHHT-HHHHHHHHHHHHHHHHHHHHHHHCCC---CHH-HHHHHHHH
T ss_pred hHhhCCHHHHHHHHHHHhcccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHChHh---hCCCHHHHHHHH
Confidence 444456677777777766311 11 138889999999999998864 443333555554
No 62
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=52.54 E-value=57 Score=31.65 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHhcccchhhhh--------hcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 51 NSKVQLLALTLLETIIKNCGDIVHMH--------VAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 51 np~vqllALtLLE~cVKNCG~~Fh~e--------Vask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
.......+|.||+.+++|+|..|... +.+.++...|.+.+... +..|-.+.+.++..--..|+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~ 105 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFR 105 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 44567799999999999999988831 11233333344444333 36777777777776666665
No 63
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=52.27 E-value=1.3e+02 Score=37.30 Aligned_cols=92 Identities=15% Similarity=0.255 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHh-c--cCCC
Q 005810 19 WAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIA-R--KKPD 95 (676)
Q Consensus 19 W~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLv-k--~k~d 95 (676)
.+.++.+||.|-. ....-+..++|.--++++||..-..++.+|+-|++.-+. ....++-++.++..+ + +.++
T Consensus 353 ~d~l~~~~d~~~n-s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~----~~~~~~t~~~l~p~~~~~~~D~~ 427 (815)
T KOG1820|consen 353 RDALLKALDAILN-STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP----KTVEKETVKTLVPHLIKHINDTD 427 (815)
T ss_pred HHHHHHHHHHHHh-cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC----cCcchhhHHHHhHHHhhhccCCc
Confidence 3456777886655 244677889999999999999999999999999999885 233444455555532 2 2367
Q ss_pred hhHHHHHHHHHHHHHHHhCC
Q 005810 96 THVKEKILILIDTWQEAFGG 115 (676)
Q Consensus 96 ~~VkeKILeLIq~Wa~aF~~ 115 (676)
..||.-.++.|..-...|+.
T Consensus 428 ~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 428 KDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 89999999999998888864
No 64
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=52.23 E-value=41 Score=32.47 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHh
Q 005810 22 NIEICDMLNHDPGQAKDVVKGIKKRIGSRNS---KVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIA 90 (676)
Q Consensus 22 ilEICD~Ins~~~~aKeAaRaIrKRLks~np---~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLv 90 (676)
+.=||++.+..-...+.....|+.-+...+. ......+.++=.++..||..+... .++++++++...+
T Consensus 100 i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~~-~~~~~~~~~l~~l 170 (200)
T smart00543 100 VRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLERE-KSPKLLDEILERL 170 (200)
T ss_pred HHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcCc-ccHHHHHHHHHHH
Confidence 4447888888777777777776666654322 234567778888888999888742 3455566654433
No 65
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=52.12 E-value=34 Score=30.34 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=47.2
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHHH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSR----N-----------SKVQLLALTLLETII 66 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~----n-----------p~vqllALtLLE~cV 66 (676)
+++||+++|++.... |-. .++..=+-=+.-..+.+.+..|..|.... . ..++++-+.+|-.-+
T Consensus 7 l~~Li~~L~~~~~~~-d~~-f~~~FllTyr~F~tp~~Ll~~L~~ry~~~~~~~~~~~~~~~~~~~~~i~~rv~~~l~~Wi 84 (104)
T PF00618_consen 7 LEKLIERLTSSFNSD-DEE-FVDTFLLTYRSFTTPEELLDKLIQRYNIPPPNGLSQDESWDQDSQEPIRLRVLNVLKYWI 84 (104)
T ss_dssp HHHHHHHHCHC-SS--HHH-HHHHHHHHHHHCS-HHHHHHHHHHHHT---SSS-HHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccC-CHH-HHHHHHHHhHhhCCHHHHHHHHHHHhcccCCccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 578999999884333 222 22222222334457899999999999521 1 126778889999999
Q ss_pred hcccchhhhhh
Q 005810 67 KNCGDIVHMHV 77 (676)
Q Consensus 67 KNCG~~Fh~eV 77 (676)
++|...|+...
T Consensus 85 ~~~~~df~~~~ 95 (104)
T PF00618_consen 85 ENYPDDFRDDP 95 (104)
T ss_dssp HHHCCCCHH-H
T ss_pred HHChHhhCCCH
Confidence 99988887643
No 66
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=50.38 E-value=48 Score=28.58 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=19.9
Q ss_pred hccCCChhHHHHHHHHHHHHHHHh
Q 005810 90 ARKKPDTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 90 vk~k~d~~VkeKILeLIq~Wa~aF 113 (676)
++++.+++|+..+.+||..|...+
T Consensus 52 Lrkh~~~~i~~~A~~Lv~~Wk~~v 75 (76)
T cd00183 52 LRKHSNEKIRKLAKALIKSWKKLV 75 (76)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHhc
Confidence 455567999999999999998754
No 67
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.62 E-value=62 Score=39.23 Aligned_cols=74 Identities=28% Similarity=0.310 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc-CCChhHH
Q 005810 21 MNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK-KPDTHVK 99 (676)
Q Consensus 21 lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~-k~d~~Vk 99 (676)
..+-|.=++|.+.+--|+++..||+-|.++|+..+.+||. ||-|-|.+ +++ ..|-+++-||+.. ....-||
T Consensus 94 GYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~----~I~niG~r---e~~-ea~~~DI~KlLvS~~~~~~vk 165 (938)
T KOG1077|consen 94 GYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALH----CIANIGSR---EMA-EAFADDIPKLLVSGSSMDYVK 165 (938)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHH----HHHhhccH---hHH-HHhhhhhHHHHhCCcchHHHH
Confidence 3455677788887888999999999999999999999996 78888864 332 2677778887654 3445677
Q ss_pred HHH
Q 005810 100 EKI 102 (676)
Q Consensus 100 eKI 102 (676)
+|.
T Consensus 166 qka 168 (938)
T KOG1077|consen 166 QKA 168 (938)
T ss_pred HHH
Confidence 664
No 68
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=46.68 E-value=1.4e+02 Score=27.13 Aligned_cols=51 Identities=10% Similarity=0.155 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhc
Q 005810 40 VKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIAR 91 (676)
Q Consensus 40 aRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk 91 (676)
+-.|+-=+.|-.+.++.-||.+||.|++.|+..+-.. .-.+.|+-+..++.
T Consensus 13 ~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~-~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 13 MLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSG-GWVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhh-hHHHHHHHHHHHHC
Confidence 3445666778899999999999999999999872222 12345555566654
No 69
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=46.67 E-value=97 Score=35.80 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHhC--CCCc----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhc
Q 005810 18 DWAMNIEICDMLNH--DPGQ----AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIAR 91 (676)
Q Consensus 18 DW~lilEICD~Ins--~~~~----aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk 91 (676)
+-..+..+|++|++ +... .......|.+-|.|.++.|..+||..|.-|+.+-. .....+.+.+++..+..++.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~-~~~~~~~~~~l~~~i~~~L~ 129 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE-GAAQLLVDNELLPLIIQCLR 129 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH-HHHHHhcCccHHHHHHHHHc
Confidence 55566777877665 2222 34566677888899999999999999999998765 45556778888888888876
Q ss_pred cCCChhHHHHHHHHHHHHHH
Q 005810 92 KKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 92 ~k~d~~VkeKILeLIq~Wa~ 111 (676)
. ++..|.+.++.+|..-..
T Consensus 130 ~-~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 130 D-PDLSVAKAAIKALKKLAS 148 (503)
T ss_pred C-CcHHHHHHHHHHHHHHhC
Confidence 5 578999999998888764
No 70
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=46.44 E-value=4e+02 Score=29.32 Aligned_cols=33 Identities=0% Similarity=-0.040 Sum_probs=22.4
Q ss_pred CcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCC
Q 005810 16 GPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRN 51 (676)
Q Consensus 16 ~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~n 51 (676)
++|..+...||+++-+ ...+.++.|.+=+.+++
T Consensus 12 ~~~~~~~~al~~vc~~---d~~~la~~Lv~vF~~~~ 44 (315)
T cd05391 12 QKELHVVYALSHVCGQ---DRTLLASILLRIFLHEK 44 (315)
T ss_pred CCChHHHHHHHHHChh---hHHHHHHHHHHHHHhcC
Confidence 4678888889997742 34666777766665544
No 71
>PTZ00429 beta-adaptin; Provisional
Probab=43.93 E-value=1.1e+02 Score=37.38 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=42.6
Q ss_pred HHHcCCCCCCcCHHHHHHHHHHHhCCCCcHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh
Q 005810 7 DRATSDMLIGPDWAMNIEICDMLNHDPGQAK--DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (676)
Q Consensus 7 ekATse~l~~pDW~lilEICD~Ins~~~~aK--eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~F 73 (676)
.++..+...----.+++.|..+.+.+++-.. +-+..|++-|..+++.|+..||.+|..+..+|+..|
T Consensus 146 kk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 146 RRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 4444443333333445666666665554422 234556677788999999999999988888776544
No 72
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.91 E-value=1.6e+02 Score=34.29 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhc-cCCChhHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIAR-KKPDTHVKEKILILIDT 108 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk-~k~d~~VkeKILeLIq~ 108 (676)
-.+.|++|||--...+....+ -|+++..+.++ +- ++=++...||.. ++.+.++.+|||.++..
T Consensus 335 GF~dL~~R~K~Q~q~~~~~r~-ri~~i~e~v~e-----Lq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ik 398 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVKQHRI-RINAIGERVTE-----LQ-KHHADAVAKIEEAKNRHVELSHRILRVMIK 398 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----HH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347789998855444433333 34444444432 22 444566677664 33567788888877643
No 73
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.87 E-value=69 Score=38.85 Aligned_cols=74 Identities=11% Similarity=0.233 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 34 GQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 34 ~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
+.-..|+..|-+-|.++..+.-++||+-+-.|.. ..|-....+++ .+.++..++...|..||+|+++|+....+
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~s---s~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD 398 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLAS---SEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCD 398 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHh---ccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 3456788888999999999999999865544443 23443433444 77777777766788999999999887654
No 74
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=43.76 E-value=39 Score=36.55 Aligned_cols=91 Identities=5% Similarity=0.126 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCC-CCHHHHHHHH-HHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh
Q 005810 36 AKDVVKGIKKRIGS-RNSKVQLLAL-TLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 36 aKeAaRaIrKRLks-~np~vqllAL-tLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF 113 (676)
..+++..+.+||.. .....++-++ .+.|.=|+.|.+.|-..+++.+|..-+.+++.. ...+|.+.=+++..|-..+
T Consensus 189 ~~~a~~~~~~~l~~~~~~g~~~~s~re~~d~Wi~~ae~~~~~~~~S~ef~~~~g~~~~a--~m~~r~~~~~~~e~~L~~l 266 (293)
T PF09712_consen 189 WMKAFERMMEKLQERAEEGEQIKSWREFYDIWIDAAEEAYEELFRSEEFAQAYGQLVNA--LMDLRKQQQEVVEEYLRSL 266 (293)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHC
Confidence 46677777778732 1122222233 677888999999999999999999999999876 3578889999999998887
Q ss_pred CCCCCChhHHHHHHHHH
Q 005810 114 GGPRARYPQYYAAYQEL 130 (676)
Q Consensus 114 ~~~~~~~p~~~~~Y~~L 130 (676)
.-. . -..+.++|+.|
T Consensus 267 ~lP-T-r~evd~l~k~l 281 (293)
T PF09712_consen 267 NLP-T-RSEVDELYKRL 281 (293)
T ss_pred CCC-C-HHHHHHHHHHH
Confidence 632 1 13455555544
No 75
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.09 E-value=4.3e+02 Score=31.38 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCC
Q 005810 97 HVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQR 140 (676)
Q Consensus 97 ~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~ 140 (676)
...++|=.||......+++ .+..+...|++|+.+||.|+..
T Consensus 211 ~~~e~IP~L~~e~~~~lP~---ql~~Lk~Gyr~m~~~gY~l~~~ 251 (570)
T COG4477 211 SIMERIPSLLAELQTELPG---QLQDLKAGYRDMKEEGYHLEHV 251 (570)
T ss_pred HHHHHHHHHHHHHHhhchH---HHHHHHHHHHHHHHccCCcccc
Confidence 5678888889999888875 6889999999999999999864
No 76
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=42.84 E-value=1.3e+02 Score=26.64 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC-CccccchHHHHHHHHHHHHHHHHHHHHhhcC------C--ChHHHHHHhhhhHHHHH
Q 005810 188 EIQNARGIMDVLAEMLNALDPN-NKEGLRQEVIVDLVDQCRTYKQRVVHLVNST------A--DESLLCQGLQLNDDLQR 258 (676)
Q Consensus 188 ELe~Ar~n~kLLnEML~~~~P~-~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t------~--DEelL~eLL~lNDeLn~ 258 (676)
-|....+++..|..++..+-.. +...+ -+-|.++...|+.+-..+-+.|... . +-..-...=.+..++..
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt~~Ds~~l-R~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~ 82 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGTPRDSQEL-REKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKE 82 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SSS--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4667778888888888877311 11111 2344556666666665555544321 1 11222334456777888
Q ss_pred HHHHHHhhhc
Q 005810 259 LLAKHESFAS 268 (676)
Q Consensus 259 vL~rYE~l~~ 268 (676)
+|.+|++..+
T Consensus 83 ~l~~fq~~q~ 92 (102)
T PF14523_consen 83 ALQEFQKAQR 92 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 77
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=42.72 E-value=79 Score=37.88 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
-+..|-+.+....+++--.++-+|.-+|-||.+.|..+.-+|=|.+-|..++.+ ++..|++.++.+++...-.
T Consensus 462 gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd-~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 462 GIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND-PDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC-CCHHHHHHHHHHHHHhhcC
Confidence 466677778888999999999999999999999999888666666666666655 6899999999999988643
No 78
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=41.47 E-value=1.7e+02 Score=31.04 Aligned_cols=63 Identities=10% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 50 RNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 50 ~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
....+-+..+.||+.++.|-....+ .+ ..+|+..++.++....|++---.+.+++..-...|.
T Consensus 94 ~~q~~R~~~~~ll~~l~~~~~~~l~-~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 94 LPQSTRYAVYQLLDSLLENHREALQ-SM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHH-hc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 4455667788999999999655443 33 358999999999887788766566666665555554
No 79
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.70 E-value=2.1e+02 Score=28.45 Aligned_cols=80 Identities=13% Similarity=0.251 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccchHHHH-HHHHHHHHHHHHHHHHhhcC----------------CChHHHHHHhhh
Q 005810 190 QNARGIMDVLAEMLNALDPNNKEGLRQEVIV-DLVDQCRTYKQRVVHLVNST----------------ADESLLCQGLQL 252 (676)
Q Consensus 190 e~Ar~n~kLLnEML~~~~P~~~e~~dnElIq-EL~~qCRsmq~rI~rLIq~t----------------~DEelL~eLL~l 252 (676)
+.....++.+.+-+..+++...-.++.+.++ |+-..++.+...+..+...+ ....+...+-.+
T Consensus 71 ~~~~~~l~~~~~~~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~ 150 (204)
T PF04740_consen 71 EEYQEALKFIKDFQSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKA 150 (204)
T ss_pred HHHHHHHHhHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHH
Confidence 3344444566665556554333335566666 66666666666655543211 235556666677
Q ss_pred hHHHHHHHHHHHhhhcC
Q 005810 253 NDDLQRLLAKHESFASG 269 (676)
Q Consensus 253 NDeLn~vL~rYE~l~~g 269 (676)
.+.|+..|++...|-..
T Consensus 151 ~~~l~~~lekL~~fd~~ 167 (204)
T PF04740_consen 151 KKKLQETLEKLRAFDQQ 167 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777777543
No 80
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=40.46 E-value=1.5e+02 Score=34.30 Aligned_cols=92 Identities=22% Similarity=0.188 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHhCCCC-cHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHHHhcccchhh
Q 005810 18 DWAMNIEICDMLNHDPG-QAKDVVKGIKKRIGSR----------------------NSKVQLLALTLLETIIKNCGDIVH 74 (676)
Q Consensus 18 DW~lilEICD~Ins~~~-~aKeAaRaIrKRLks~----------------------np~vqllALtLLE~cVKNCG~~Fh 74 (676)
+-.++.-|++.|..... -++.|+++|++-.++. +..+.+|.+.++-.+.+...+.|.
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34456667777766543 3566777766665543 333333333333333333322332
Q ss_pred hhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 75 MHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 75 ~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
.+.+..|++.+++.+++ .|.-||.-++++|...++
T Consensus 197 -~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 197 -AVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE 231 (503)
T ss_pred -HHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc
Confidence 22334677777777777 788999999999999887
No 81
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=40.18 E-value=2.4e+02 Score=29.19 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCCCCcCHHHHH----HHHHHHhCCCCcHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhcc
Q 005810 12 DMLIGPDWAMNI----EICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNC 69 (676)
Q Consensus 12 e~l~~pDW~lil----EICD~Ins~~~~aKeAaRaIrKRL-ks~np~vqllALtLLE~cVKNC 69 (676)
....+.+|...+ .+.|++...++...|.+..|..-| ++.++.++-+||..|..+.++.
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 334556677655 578889999999999999999999 8999999999999999998443
No 82
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.02 E-value=2.5e+02 Score=27.51 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhcC--CChHHHHHHhhhhHHHHHHHHHHH
Q 005810 187 TEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNST--ADESLLCQGLQLNDDLQRLLAKHE 264 (676)
Q Consensus 187 sELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t--~DEelL~eLL~lNDeLn~vL~rYE 264 (676)
.++...+..++-|..=|..+...-....-.+.|.+|-..|+.+..||..|-... -+++.+..+..-...+.+...+-.
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777766677664332222234667888899999999999998754 245556666555555555555444
Q ss_pred hh
Q 005810 265 SF 266 (676)
Q Consensus 265 ~l 266 (676)
++
T Consensus 166 ri 167 (169)
T PF07106_consen 166 RI 167 (169)
T ss_pred HH
Confidence 44
No 83
>COG4342 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.29 E-value=2.2e+02 Score=30.74 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccC---------CChhHHHHHH
Q 005810 34 GQAKDVVKGIKKRIGSRNSKV-QLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKK---------PDTHVKEKIL 103 (676)
Q Consensus 34 ~~aKeAaRaIrKRLks~np~v-qllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k---------~d~~VkeKIL 103 (676)
..++|-+.+|++-|.+.+.+- ---|+.++-.... .+.|.+++|.++|.|.++.| ++.+-..+.+
T Consensus 58 k~ardyls~l~r~ig~~~~kdKy~kA~R~f~~fl~------~rgiise~~Ae~lrk~lk~k~~~g~dlyIp~de~ir~~~ 131 (291)
T COG4342 58 KTARDYLSALNRPIGSVREKDKYQKAYRLFIKFLT------SRGIISEEFAEKLRKPLKVKKSNGVDLYIPSDEEIRATE 131 (291)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH------HcccccHHHHHHHHHHhccCcCCCcceecCCHHHHHHHH
Confidence 457888999999885533222 1234443332222 23478999999999999754 3456667778
Q ss_pred HHHHHHHHH
Q 005810 104 ILIDTWQEA 112 (676)
Q Consensus 104 eLIq~Wa~a 112 (676)
+++..|.+.
T Consensus 132 ~l~r~~~e~ 140 (291)
T COG4342 132 ELAREYSER 140 (291)
T ss_pred HHHHHhcch
Confidence 888888764
No 84
>PTZ00429 beta-adaptin; Provisional
Probab=38.10 E-value=1.5e+02 Score=36.30 Aligned_cols=86 Identities=16% Similarity=0.314 Sum_probs=51.2
Q ss_pred cCHHHHHHHHHHHhC----CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc
Q 005810 17 PDWAMNIEICDMLNH----DPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK 92 (676)
Q Consensus 17 pDW~lilEICD~Ins----~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~ 92 (676)
.+|.-+. |.+++.. +.....+.+..|..+|+|.|+.|.+-|+.++=.+..+|...++.++. ++...-|+.|.+
T Consensus 232 ~EW~Qi~-IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~s- 308 (746)
T PTZ00429 232 NEWGQLY-ILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLSR- 308 (746)
T ss_pred ChHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhhC-
Confidence 4777542 4443332 22345678888999999999999999999887777777544443332 233333444432
Q ss_pred CCChhHHHHHHHHH
Q 005810 93 KPDTHVKEKILILI 106 (676)
Q Consensus 93 k~d~~VkeKILeLI 106 (676)
.+++||--+|..|
T Consensus 309 -s~~eiqyvaLr~I 321 (746)
T PTZ00429 309 -RDAETQYIVCKNI 321 (746)
T ss_pred -CCccHHHHHHHHH
Confidence 2344554444333
No 85
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=37.65 E-value=1.1e+02 Score=29.03 Aligned_cols=73 Identities=11% Similarity=0.203 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhcccchhhhhhcc-hHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 35 QAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAE-KNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 35 ~aKeAaRaIrKRL-ks~np~vqllALtLLE~cVKNCG~~Fh~eVas-k~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
+--+.+|.|.+-| ++.++.+..-|+.=|-.+|+.... .+.|.+ -..-..+-+|+. ..|.+||..+|..|+.|=
T Consensus 40 ~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 40 NNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMN-HEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 3456667777777 445666666677777778877621 222221 111122233333 478999999999998763
No 86
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=37.31 E-value=3.5e+02 Score=28.24 Aligned_cols=118 Identities=13% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHHHcCCCCCCcCHHHHHH-HHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHH--------HHHHHHhc-ccchh
Q 005810 4 SMVDRATSDMLIGPDWAMNIE-ICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALT--------LLETIIKN-CGDIV 73 (676)
Q Consensus 4 ~LIekATse~l~~pDW~lilE-ICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALt--------LLE~cVKN-CG~~F 73 (676)
...|+-|...-+++|-+.|.+ ||..++-++..-+.-++.|.+-.+..+.....-.|. |..++-.. .+..|
T Consensus 56 t~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f 135 (206)
T PLN03060 56 TVYDQLMDGYPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVLKDIAERAAGKTKF 135 (206)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccccchHHHHHHHHhhcCCCc
Confidence 345667777777888887765 999999999888888888888888877776555554 33333322 23467
Q ss_pred hhhhcchHHHHHHHHHhccC--CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 005810 74 HMHVAEKNVLHEMVKIARKK--PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELL 131 (676)
Q Consensus 74 h~eVask~FLneLvKLvk~k--~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk 131 (676)
|- ++=|-=-|.+|+..- .+++ ++..|.+.+.-...+..+-.++|+.+.
T Consensus 136 ~Y---SRl~AIGL~~LLe~a~~~d~~-------~l~~l~~~L~ls~~kv~kDL~lYrsnL 185 (206)
T PLN03060 136 HY---SRFFAIGLFRLLECAKASDPA-------VLEKLSKALNVSKRSVDRDLDVYRNLL 185 (206)
T ss_pred ch---HHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHcCCCHHHHHhhHHHHHhHH
Confidence 63 333333366666432 2332 777888877643333334456666544
No 87
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=37.19 E-value=83 Score=27.83 Aligned_cols=70 Identities=9% Similarity=0.126 Sum_probs=41.6
Q ss_pred HHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005810 61 LLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (676)
Q Consensus 61 LLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kG 134 (676)
..+.+.+|-|..+....-.=.|-+.=+.-++...+..+++++.++|..|.+..+.. ..+..+.+.|+.-|
T Consensus 4 ~f~~i~~~lG~~Wk~laR~LGlse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~----At~~~L~~aL~~~~ 73 (86)
T cd08306 4 AFDVICENVGRDWRKLARKLGLSETKIESIEEAHPRNLREQVRQSLREWKKIKKKE----AKVADLIKALRDCQ 73 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcc----hHHHHHHHHHHHcC
Confidence 45667777776665433222444443333332223469999999999999987632 33445555555543
No 88
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=37.14 E-value=1.2e+02 Score=41.29 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=57.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
++..|.+-|++.++..|..|..+|-.++.+|++ ....|.+...+..|+++++...+..||+.+...|..-
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nL 259 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFES-SISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL 259 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 677788899999999999999999889999865 4556667788999999998767778999888777443
No 89
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=36.05 E-value=43 Score=29.70 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005810 95 DTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (676)
Q Consensus 95 d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kG 134 (676)
+..++++|.++|..|.+..+++. ..+..+.+-|+.-|
T Consensus 38 ~~dl~eq~~~mL~~W~~~~~~~~---atv~~L~~AL~~~g 74 (86)
T cd08779 38 RDDLDEQIFDMLFSWAQRQAGDP---DAVGKLVTALEESG 74 (86)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHcC
Confidence 34699999999999999876542 23455555665443
No 90
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=36.03 E-value=3.8e+02 Score=29.17 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=29.4
Q ss_pred hccCCChhHHHHHHHHHHHHHHHh-CCCCCChhHHHHHHHHHHHhccC
Q 005810 90 ARKKPDTHVKEKILILIDTWQEAF-GGPRARYPQYYAAYQELLRAGAV 136 (676)
Q Consensus 90 vk~k~d~~VkeKILeLIq~Wa~aF-~~~~~~~p~~~~~Y~~Lk~kGi~ 136 (676)
+.....+.||+++..+-..|...+ ......-.......+.|-.-|+.
T Consensus 96 ~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~ 143 (290)
T PF07899_consen 96 ISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIV 143 (290)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCc
Confidence 345567899999999999999999 32211112333344444445553
No 91
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=35.65 E-value=5.5e+02 Score=27.04 Aligned_cols=121 Identities=11% Similarity=0.105 Sum_probs=63.0
Q ss_pred HHHHHHHcCCCC-CCcCHHHHHHHH-HHHhCCCCc-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-----chhh
Q 005810 3 NSMVDRATSDML-IGPDWAMNIEIC-DMLNHDPGQ-AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-----DIVH 74 (676)
Q Consensus 3 ~~LIekATse~l-~~pDW~lilEIC-D~Ins~~~~-aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG-----~~Fh 74 (676)
++.+.++..... .+.+|..+++.. +++...+.. .+..-+.|..|+.....+ +....|+..++.... ..-.
T Consensus 141 ~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~--~~e~~vl~~~~~~~~~~~~~~~~~ 218 (278)
T PF08631_consen 141 EEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ--WLEKLVLTRVLLTTQSKDLSSSEK 218 (278)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH--HHHHHHHHHHHHHcCCccccchhH
Confidence 345556665655 677888877765 455555433 355557778888765433 333333333333222 1111
Q ss_pred hhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH-hCCCCCChhHHHHHHH
Q 005810 75 MHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA-FGGPRARYPQYYAAYQ 128 (676)
Q Consensus 75 ~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a-F~~~~~~~p~~~~~Y~ 128 (676)
.+. =.+|++.+.+.....-..+-+.-+..+|=.++.. |.. .+|..=.+.|+
T Consensus 219 i~~-l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~--k~y~~A~~w~~ 270 (278)
T PF08631_consen 219 IES-LEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKA--KNYDEAIEWYE 270 (278)
T ss_pred HHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHH
Confidence 111 1356666666665555566666666666666554 442 23444344443
No 92
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=35.35 E-value=47 Score=30.55 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 80 KNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 80 k~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
+.||..|+++.+++..++|.+++.+||+..-++
T Consensus 7 k~FL~tLi~las~~~spev~~~Vr~LV~~L~~~ 39 (96)
T PF07531_consen 7 KNFLNTLIQLASDKQSPEVGENVRELVQNLVDG 39 (96)
T ss_dssp HHHHHHHHHHHCCSC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHcC
Confidence 689999999998866778888999988887654
No 93
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=35.28 E-value=1.2e+02 Score=27.82 Aligned_cols=89 Identities=15% Similarity=0.282 Sum_probs=53.2
Q ss_pred HHHHHHHhCC-CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhh-hhhc---c-----------hHHHHHH
Q 005810 23 IEICDMLNHD-PGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVH-MHVA---E-----------KNVLHEM 86 (676)
Q Consensus 23 lEICD~Ins~-~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh-~eVa---s-----------k~FLneL 86 (676)
.-|++++.++ |..-.+.+.-|...++. ++......|.+|..+.+.+.+ |. ..+. . ..+++-+
T Consensus 10 ~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-~~~~~~~~~r~~~l~~~l~~~~~~i~~~l 87 (148)
T PF08389_consen 10 QVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-FRRSSLSQERRRELKDALRSNSPDILEIL 87 (148)
T ss_dssp HHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-SHCCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-hhchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555554 55566777777777776 577777888888888888764 21 1111 1 1112222
Q ss_pred HHHhccCCC---hhHHHHHHHHHHHHHHHh
Q 005810 87 VKIARKKPD---THVKEKILILIDTWQEAF 113 (676)
Q Consensus 87 vKLvk~k~d---~~VkeKILeLIq~Wa~aF 113 (676)
.+++....+ ..+..++|+.+..|-..+
T Consensus 88 ~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~ 117 (148)
T PF08389_consen 88 SQILSQSSSEANEELVKAALKCLKSWISWI 117 (148)
T ss_dssp HHHHHHHCHCCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHhC
Confidence 222322222 788899999999997643
No 94
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=34.70 E-value=2.7e+02 Score=34.42 Aligned_cols=92 Identities=14% Similarity=0.228 Sum_probs=62.9
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc---cchhhhhhcchHHHHHHHHH-hcc---C
Q 005810 21 MNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNC---GDIVHMHVAEKNVLHEMVKI-ARK---K 93 (676)
Q Consensus 21 lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNC---G~~Fh~eVask~FLneLvKL-vk~---k 93 (676)
-.+++|.-|++++++.+.|+.++-.|- ++++++..+|-.|..+|+-. -.....++..+....-+.-. +.+ +
T Consensus 24 qA~~y~~qiKsSp~aw~Icie~l~~~t--s~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk~qvl~ne~~~ 101 (980)
T KOG2021|consen 24 QAIEYLNQIKSSPNAWEICIELLINET--SNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLKFQVLGNEQTK 101 (980)
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHhhc--ccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 578999999999999999999988877 88999999999999988732 22344444444443333332 222 2
Q ss_pred CChhHHHHHHHHHH---------HHHHHhC
Q 005810 94 PDTHVKEKILILID---------TWQEAFG 114 (676)
Q Consensus 94 ~d~~VkeKILeLIq---------~Wa~aF~ 114 (676)
-+.-|+.|+-+++- .|..-|-
T Consensus 102 ~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~ 131 (980)
T KOG2021|consen 102 LPDFIMNKIAQVLTTLFMLEYPDCWNSFFD 131 (980)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34567777765543 5766654
No 95
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=34.61 E-value=1.6e+02 Score=26.90 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=29.3
Q ss_pred hhhhhcchHHHHHHHHHhccCCC----------hhHHHHHHHHHHHHHHHhCCC
Q 005810 73 VHMHVAEKNVLHEMVKIARKKPD----------THVKEKILILIDTWQEAFGGP 116 (676)
Q Consensus 73 Fh~eVask~FLneLvKLvk~k~d----------~~VkeKILeLIq~Wa~aF~~~ 116 (676)
|+.-+...++++.|........+ ..+|.||+.+|..|-+.+..|
T Consensus 36 yr~F~tp~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~rv~~~l~~Wv~~~~~d 89 (127)
T smart00229 36 YRSFITTQELLQLLLYRYNAIPPESWVERKVNPLRVKNRVLNILRHWVENYWQD 89 (127)
T ss_pred hhhhCCHHHHHHHHHHHhCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHCCcc
Confidence 33334556677776665543211 358999999999999998754
No 96
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.52 E-value=2e+02 Score=27.90 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHH-HhccCC-ChhHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK-IARKKP-DTHVKEKILILIDTWQE 111 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvK-Lvk~k~-d~~VkeKILeLIq~Wa~ 111 (676)
..++|-+-+.+.++.+-.++|.++-.|+.+-+..+..|+ .-|+..+.. ++..+. ...-|+.+||.+..+-.
T Consensus 74 l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~el--e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 74 LCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLEL--EVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 334444555567789999999999999988765555554 678888777 666443 45778888888888764
No 97
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=34.46 E-value=2.3e+02 Score=32.40 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCCCCcH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccc-------hhhhhhcch-------HH
Q 005810 19 WAMNIEICDMLNHDPGQA-KDVVKGIKKRIGSR-NSKVQLLALTLLETIIKNCGD-------IVHMHVAEK-------NV 82 (676)
Q Consensus 19 W~lilEICD~Ins~~~~a-KeAaRaIrKRLks~-np~vqllALtLLE~cVKNCG~-------~Fh~eVask-------~F 82 (676)
...+.+||+.|..-+-.+ .+...+.+.-|... ...+...+|.||.+|++-... .|...|.+. .+
T Consensus 8 ~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~ 87 (464)
T PF11864_consen 8 IKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLR 87 (464)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHH
Confidence 457889999999876544 44555555555554 456777899999999998876 344444332 33
Q ss_pred HHHHHHHhccCCCh-hHHHHHHHHHHHHHH
Q 005810 83 LHEMVKIARKKPDT-HVKEKILILIDTWQE 111 (676)
Q Consensus 83 LneLvKLvk~k~d~-~VkeKILeLIq~Wa~ 111 (676)
|+-|+.|-+...|. ..-..+..+|-.|-.
T Consensus 88 l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 88 LEALIALTDNGRDIDFFEYEIGPFLLSWLE 117 (464)
T ss_pred HHHHHHHHcCCcCchhcccchHHHHHHHHH
Confidence 44444454444332 234556666666654
No 98
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=33.70 E-value=60 Score=29.65 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 80 KNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 80 k~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
++||..|+++.++...++|-+++.+||+..-++
T Consensus 6 k~FL~tLi~ls~~~~qpe~~~~Vr~LV~~L~~~ 38 (92)
T smart00549 6 KRFLTTLIQLSNDISQPEVAERVRTLVLGLVNG 38 (92)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhC
Confidence 689999999988765478888888888887664
No 99
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=33.63 E-value=93 Score=27.66 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=40.9
Q ss_pred HHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhcc
Q 005810 62 LETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (676)
Q Consensus 62 LE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi 135 (676)
|..+..|-|.......-.=.|-+.=+..++...+..+.++|.+++..|.+..+.. ..+..+.+.|+.-|+
T Consensus 5 L~~la~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l~eQv~~mL~~W~~r~G~~----ATv~~L~~aL~~~~~ 74 (83)
T cd08319 5 LNQLAQRLGPEWEQVLLDLGLSQTDIYRCKENHPHNVQSQIVEALVKWRQRFGKK----ATVQSLIQSLKAVEV 74 (83)
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCC----CcHHHHHHHHHHcCC
Confidence 3445555565444322222333332333333334479999999999999988632 346667777777664
No 100
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=33.47 E-value=2.6e+02 Score=32.25 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=36.1
Q ss_pred HHHHHHHcCC-CCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC
Q 005810 3 NSMVDRATSD-MLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS 49 (676)
Q Consensus 3 ~~LIekATse-~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks 49 (676)
..++.+.+++ .+..-++..+.+|+|.|......-+..++.+...|..
T Consensus 50 ~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~ 97 (473)
T PF14643_consen 50 EEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEE 97 (473)
T ss_pred HHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666 6777888999999999988766677888888887764
No 101
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=33.38 E-value=1.8e+02 Score=26.07 Aligned_cols=45 Identities=13% Similarity=0.335 Sum_probs=31.9
Q ss_pred hhhhhhcchHHHHHHHHHhccCC-------------ChhHHHHHHHHHHHHHHHhCCC
Q 005810 72 IVHMHVAEKNVLHEMVKIARKKP-------------DTHVKEKILILIDTWQEAFGGP 116 (676)
Q Consensus 72 ~Fh~eVask~FLneLvKLvk~k~-------------d~~VkeKILeLIq~Wa~aF~~~ 116 (676)
.++.-+...++++.|+....... ...||.||+.+|..|-+.+..+
T Consensus 27 TyrsF~s~~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~Wv~~~~~d 84 (122)
T cd06224 27 TYRSFTTPTELLEKLIERYEIAPPENLEYNDWDKKKSKPIRLRVLNVLRTWVENYPYD 84 (122)
T ss_pred HhhhhCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34444556777887777665321 2368999999999999998765
No 102
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=33.38 E-value=2.3e+02 Score=29.97 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHH----HHhhcCCChHHHHHHhhhhHHHHHHHHHHHh
Q 005810 190 QNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVV----HLVNSTADESLLCQGLQLNDDLQRLLAKHES 265 (676)
Q Consensus 190 e~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~----rLIq~t~DEelL~eLL~lNDeLn~vL~rYE~ 265 (676)
++...++.+|..+|..+.-+-....|.-.+.-|..+|+.|.-+|- .++.+|--.|.+..|=.+-|.|..++.+-+.
T Consensus 113 ~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~ 192 (238)
T PF14735_consen 113 QVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEILSDTYTPETVPALRKIRDHLEEAIEELEQ 192 (238)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999888876665555666778889999999988773 3455665677777777788888887766554
No 103
>PHA02713 hypothetical protein; Provisional
Probab=32.58 E-value=1.6e+02 Score=34.49 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=65.5
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHH------HHHHHHHHHhcccchhhh
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLL------ALTLLETIIKNCGDIVHM 75 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqll------ALtLLE~cVKNCG~~Fh~ 75 (676)
++.+|+-+-...+..++...+++.+|++.-.. --+.|.+.|+++|...|=-..+. .+.|++.+-+=.-+.|..
T Consensus 79 ~~~ll~y~Yt~~i~~~nv~~ll~aA~~lqi~~-l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~ 157 (557)
T PHA02713 79 VKNIVQYLYNRHISSMNVIDVLKCADYLLIDD-LVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPT 157 (557)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 35667777555566666667777777766542 34667788888888766433321 123333333222345665
Q ss_pred hhcchHHHH----HHHHHhccCCChhH--HHHHHHHHHHHHH
Q 005810 76 HVAEKNVLH----EMVKIARKKPDTHV--KEKILILIDTWQE 111 (676)
Q Consensus 76 eVask~FLn----eLvKLvk~k~d~~V--keKILeLIq~Wa~ 111 (676)
.+.+++|++ +|++|++......| -+.+.+.+..|-+
T Consensus 158 v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~ 199 (557)
T PHA02713 158 LITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLE 199 (557)
T ss_pred HhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHh
Confidence 566788875 46666765322333 4578899999965
No 104
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.54 E-value=2.1e+02 Score=33.13 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=14.3
Q ss_pred CCCCCCcCCCCCCCCCccC-CCCCCCC
Q 005810 456 PAWNGQLALPQPTSPAYGM-QSGGSLP 481 (676)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~-~~~~~~p 481 (676)
.-||++... ++..-.|+- ++.-.+.
T Consensus 359 ~ean~~Ssn-~p~~~~y~~r~~~~gf~ 384 (483)
T KOG2236|consen 359 GEANRTSSN-QPAPQMYRGRDQNRGFK 384 (483)
T ss_pred ccccccccc-CCcccccCCcccccCCC
Confidence 479987776 444444544 4444455
No 105
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=32.42 E-value=1.8e+02 Score=29.12 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=51.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 43 IKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 43 IrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
|.+-..+.+..+.+.|+.+|+.+++.+ - +.=.+-+-.|+.|..+ ++..|+.++..++..-.+.+.
T Consensus 13 Il~~~~~~~~~vr~~Al~~l~~il~qG--L----vnP~~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 13 ILELCLSSDDSVRLAALQVLELILRQG--L----VNPKQCVPTLIALETS-PNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhcC--C----CChHHHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhH
Confidence 334445789999999999999999976 2 3345667788888776 778999999999998877654
No 106
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=32.39 E-value=1.9e+02 Score=26.89 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=27.0
Q ss_pred hcCCChHHHHHHhhhhHHHHHHHHHHHhhhcC
Q 005810 238 NSTADESLLCQGLQLNDDLQRLLAKHESFASG 269 (676)
Q Consensus 238 q~t~DEelL~eLL~lNDeLn~vL~rYE~l~~g 269 (676)
+.+.=|.+-.++..+..+|..-+.+||.+++.
T Consensus 50 esitle~ve~Ei~~lQ~qL~~~ldeYE~~Vrr 81 (99)
T PF11083_consen 50 ESITLEQVEKEIRELQNQLGLYLDEYEKLVRR 81 (99)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888999999999999999998764
No 107
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=31.37 E-value=66 Score=25.12 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHH
Q 005810 52 SKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILI 106 (676)
Q Consensus 52 p~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLI 106 (676)
+.+...|+..|-.+...|++.+.. .-.+.+..|.+++++ .+..||......|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~d-~~~~VR~~A~~aL 52 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP--YLPELLPALIPLLQD-DDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTTS-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 346667777777778888766554 235677777777765 3459998887655
No 108
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=31.32 E-value=95 Score=31.12 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH--Hh------h-----cCCChHHHHHHhhhhHHHHHH
Q 005810 216 QEVIVDLVDQCRTYKQRVVH--LV------N-----STADESLLCQGLQLNDDLQRL 259 (676)
Q Consensus 216 nElIqEL~~qCRsmq~rI~r--LI------q-----~t~DEelL~eLL~lNDeLn~v 259 (676)
.|-..+|.+.|+++...+-| || + .+.|.++|.++|+++|+|.+.
T Consensus 55 ~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~~sne~stDpe~Lmevle~~E~IS~~ 111 (168)
T KOG3192|consen 55 SEQSAELNKAYDTLKDPLARARYLLKLKGQEQTSNELSTDPEFLMEVLEYHEAISEM 111 (168)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCchhhhccCHHHHHHHHHHHHHHHhc
Confidence 34445566666666555543 21 1 124777888888888777653
No 109
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=30.52 E-value=2.1e+02 Score=34.92 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhcccchhhhhhcc-hHHHHHHHHHhcc----------C-CChhHH
Q 005810 34 GQAKDVVKGIKKRIGSRNS--KVQLLALTLLETIIKNCGDIVHMHVAE-KNVLHEMVKIARK----------K-PDTHVK 99 (676)
Q Consensus 34 ~~aKeAaRaIrKRLks~np--~vqllALtLLE~cVKNCG~~Fh~eVas-k~FLneLvKLvk~----------k-~d~~Vk 99 (676)
+++.|.+.+|.+-|...+. ..=+-=|.|+.-++-||-.++.....= +.|-..|.+|+.. + .....|
T Consensus 462 ~aa~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas~YR~~FEa~L~~Ifd~l~~~yr~I~gRIkaE~fk 541 (877)
T KOG0151|consen 462 DAAGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANASAYRKSFEATLEDIFDDLNDLYRSIGGRIKAEAFK 541 (877)
T ss_pred hhHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Confidence 4577888888888764321 112233567777778887665433322 2333334444422 2 345789
Q ss_pred HHHHHHHHHHHHHhC
Q 005810 100 EKILILIDTWQEAFG 114 (676)
Q Consensus 100 eKILeLIq~Wa~aF~ 114 (676)
+||+.+|+.|.+.|.
T Consensus 542 qRV~kVirvWedW~i 556 (877)
T KOG0151|consen 542 QRVMKVIRVWEDWAI 556 (877)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999975
No 110
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=30.17 E-value=3.3e+02 Score=32.48 Aligned_cols=97 Identities=13% Similarity=0.266 Sum_probs=65.1
Q ss_pred HHHhCCCCcHHHHHHHHHHHhCCC--------------CH--HHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHh
Q 005810 27 DMLNHDPGQAKDVVKGIKKRIGSR--------------NS--KVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIA 90 (676)
Q Consensus 27 D~Ins~~~~aKeAaRaIrKRLks~--------------np--~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLv 90 (676)
|.++.-...+.+|+|+|...+.-. .. +.-..+|.||. |+-=| ..+....+-.+.+-.|.+++
T Consensus 227 d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~-ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 227 DKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADC-APKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred ccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHh-chHHHHHHHhHhhHHHHHHH
Confidence 444555566889999998877531 11 23356778888 55556 35666666666666666665
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 005810 91 RKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELL 131 (676)
Q Consensus 91 k~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk 131 (676)
-+ ++++||+-..+.|.....-..+ +.|...+..|.
T Consensus 305 ~D-T~~evr~a~~~~l~~~~svidN-----~dI~~~ip~Ll 339 (569)
T KOG1242|consen 305 WD-TKPEVRKAGIETLLKFGSVIDN-----PDIQKIIPTLL 339 (569)
T ss_pred cc-CCHHHHHHHHHHHHHHHHhhcc-----HHHHHHHHHHH
Confidence 55 6789999999999999887754 34555555554
No 111
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=30.01 E-value=1.7e+02 Score=31.41 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccC-CChhHHHHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKK-PDTHVKEKILILIDTWQ 110 (676)
Q Consensus 36 aKeAaRaIrKRL-ks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k-~d~~VkeKILeLIq~Wa 110 (676)
-+.+++.|-.-| ....+.++..+|..|-.++-.+...++ .+-.-+=+..++++++.+ ++.+||-||+|.+.-|=
T Consensus 131 r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r-~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 131 REQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR-DFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH-HHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 355777777777 456789999999655544444333333 233333366677788754 78899999999887663
No 112
>PRK14148 heat shock protein GrpE; Provisional
Probab=29.78 E-value=2.1e+02 Score=29.48 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHH
Q 005810 218 VIVDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 218 lIqEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~r 262 (676)
...-+...+..+|+|..+-++.. .-+.++.+||.+=|+|.+||..
T Consensus 62 ~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~ 109 (195)
T PRK14148 62 EALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKH 109 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 33456777888888888877765 6789999999999999999963
No 113
>PRK14140 heat shock protein GrpE; Provisional
Probab=29.59 E-value=2.2e+02 Score=29.19 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHH
Q 005810 220 VDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 220 qEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~r 262 (676)
.-+...|..+|+|..+=+... .-+.++.+||.+-|+|.+||..
T Consensus 61 lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~ 106 (191)
T PRK14140 61 LRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQI 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666778888888876654 6789999999999999999963
No 114
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=7.3e+02 Score=27.84 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=69.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHH-----HHHHHHHHhCC--CCHHHHHHHHHHHHHHHhcccchhh
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKD-----VVKGIKKRIGS--RNSKVQLLALTLLETIIKNCGDIVH 74 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKe-----AaRaIrKRLks--~np~vqllALtLLE~cVKNCG~~Fh 74 (676)
++.|+...+++...+.--.+...||-+|+..+-+..+ -...|++=+.+ .+.+.+..|+.|+..+++-- +-+
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~--~s~ 245 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED--KSD 245 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh--hhh
Confidence 3567777776665555567788999999998755433 34568888887 67888999999999988732 222
Q ss_pred h-hhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh
Q 005810 75 M-HVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 75 ~-eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF 113 (676)
. .++...|..-++.++.. -+..+++.++..+.+--..|
T Consensus 246 ~d~~~~~~f~~~~~~l~~~-l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 246 EDIASSLGFQRVLENLISS-LDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHhhhhHHHHHHhhc-cchhhhHHHHHHHHHHHHHH
Confidence 2 33444454445554443 34455555555555444444
No 115
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=29.33 E-value=75 Score=26.64 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 005810 98 VKEKILILIDTWQEAFGGPRARYPQYYAAYQE 129 (676)
Q Consensus 98 VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~ 129 (676)
+++++.++|..|....... .....+.++.+.
T Consensus 39 ~~~~~~~~L~~W~~~~~~~-at~~~L~~aL~~ 69 (83)
T PF00531_consen 39 LREQTYEMLQRWRQREGPN-ATVDQLIQALRD 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHGST-SSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 9999999999999995432 233444444433
No 116
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=29.25 E-value=95 Score=26.56 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=37.9
Q ss_pred HHHHHhc-ccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005810 62 LETIIKN-CGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (676)
Q Consensus 62 LE~cVKN-CG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kG 134 (676)
+..++++ -|..+......-.|-+.-++.++......+++++.++|..|....+.. ..+..+...|++-|
T Consensus 8 ~~~l~~~~~g~~W~~la~~Lg~~~~~i~~i~~~~~~~~~~~~~~lL~~W~~~~g~~----at~~~L~~aL~~~~ 77 (88)
T smart00005 8 LAKLLDHPLGLDWRELARKLGLSEADIDQIRTEAPRDLAEQSVQLLRLWEQREGKN----ATLGTLLEALRKMG 77 (88)
T ss_pred HHHHHcCccchHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHccchh----hHHHHHHHHHHHcC
Confidence 3444444 454444332222442332333332223368999999999999986632 34556666666554
No 117
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=29.12 E-value=1.8e+02 Score=29.37 Aligned_cols=65 Identities=14% Similarity=0.331 Sum_probs=41.8
Q ss_pred HHHHHHhCCCCc--HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHH
Q 005810 24 EICDMLNHDPGQ--AKDVVKGIKKRIG-SRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK 88 (676)
Q Consensus 24 EICD~Ins~~~~--aKeAaRaIrKRLk-s~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvK 88 (676)
.+||.+..+... -.+.-..|..=|. ...|.|-|.+|.||-.+++-||..-.......-..++++.
T Consensus 48 ~mcd~i~~~~~S~~I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~~~~~~ti~m~~~l~~dIi~ 115 (167)
T PF11099_consen 48 SMCDIIEANDISYNIDDIKNEVIEILLSDNRPSVKLATISLISIIIEKWGNKNKTIHMDSLLSNDIID 115 (167)
T ss_dssp HHHHHHHCCCCTT-HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHhccCCCceeehHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 389988776544 4777777776676 4569999999999999999886443333332334444444
No 118
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.76 E-value=1.3e+02 Score=21.11 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 005810 40 VKGIKKRIGSRNSKVQLLALTLLETIIKNC 69 (676)
Q Consensus 40 aRaIrKRLks~np~vqllALtLLE~cVKNC 69 (676)
+-.|.+-+.+.+++|-..|+.-|..+++.|
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 346788889999999999999999999887
No 119
>PRK14162 heat shock protein GrpE; Provisional
Probab=28.49 E-value=2.2e+02 Score=29.28 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHH
Q 005810 218 VIVDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLA 261 (676)
Q Consensus 218 lIqEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~ 261 (676)
.+.-+...+..+|+|..+-++.. .-+.++.+||-+=|+|.+||.
T Consensus 61 ~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~ 107 (194)
T PRK14162 61 KYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALA 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh
Confidence 33456667788888888877654 578899999999999999996
No 120
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.47 E-value=4.2e+02 Score=32.91 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005810 95 DTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (676)
Q Consensus 95 d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kG 134 (676)
+.++|.-|..-|...++.|..+. -=.|-.+.+-|+..|
T Consensus 398 d~~~k~~~as~I~~laEkfaP~k--~W~idtml~Vl~~aG 435 (866)
T KOG1062|consen 398 DEDFKADIASKIAELAEKFAPDK--RWHIDTMLKVLKTAG 435 (866)
T ss_pred cHHHHHHHHHHHHHHHHhcCCcc--hhHHHHHHHHHHhcc
Confidence 77888888888888888887542 223444445555555
No 121
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=28.38 E-value=4.6e+02 Score=27.87 Aligned_cols=74 Identities=12% Similarity=0.225 Sum_probs=55.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
.+..|-.-|.+++..++.++|.+|=-|.+|-- ... ++-..+-+..+..|+..+.+.++-.++|.++..-.+.++
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~-~~~-~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD-MTR-ELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhccCHH-HHH-HHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 34444455667899999999999999998873 333 333445788888999888888888888888888777665
No 122
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=28.27 E-value=79 Score=28.11 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=41.1
Q ss_pred HHHHHhcccchhhhhhcchHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHh
Q 005810 62 LETIIKNCGDIVHMHVAEKNVLHEMVKIARKK-PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRA 133 (676)
Q Consensus 62 LE~cVKNCG~~Fh~eVask~FLneLvKLvk~k-~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~k 133 (676)
|+.+..|-|..+....-.=.|-+.=++.+... ....+++++.++|..|....+... ..+..+.+.|++-
T Consensus 5 l~~l~~~lG~~Wk~lar~LG~s~~eI~~ie~~~~r~~~~eq~~~mL~~W~~r~g~~~---ATv~~L~~aL~~~ 74 (86)
T cd08777 5 LDLLRENLGKKWKRCARKLGFTESEIEEIDHDYERDGLKEKVHQMLHKWKMKEGSKG---ATVGKLAQALEGC 74 (86)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHHHHHHHHHHHccCCCC---cHHHHHHHHHHHc
Confidence 45666777776654433334544444445433 234589999999999999875321 2345555555543
No 123
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=27.97 E-value=2.4e+02 Score=25.90 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc-cchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNC-GDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILID 107 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNC-G~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq 107 (676)
.+.-++.|-.=+++...-..-.+|.||..+++.- |...-..|+..+||..|++.+ ++..+.+|-++++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~----~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNV----EPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcC----CHHHHHHHHHHHh
Confidence 5666777777778877778999999999999998 777888899999988888544 4455666665554
No 124
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.91 E-value=4.7e+02 Score=30.31 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCC
Q 005810 96 THVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQR 140 (676)
Q Consensus 96 ~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~ 140 (676)
.+|..-.++-+-.|-..|- .+|+|.++|+..+-.|...|..
T Consensus 130 Sev~nWT~e~tvqWLi~~V----eLPqyve~fk~~kv~G~alPRl 170 (575)
T KOG4403|consen 130 SEVHNWTNERTVQWLINDV----ELPQYVEAFKAKKVDGKALPRL 170 (575)
T ss_pred hhhhcchHHHHHHHHHHhc----ccHHHHHHHHhccCCccccccc
Confidence 3677777777888888775 4899999999999999888854
No 125
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=27.76 E-value=7.9e+02 Score=26.45 Aligned_cols=52 Identities=21% Similarity=0.569 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhcCCCCcc------ccchHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 005810 193 RGIMDVLAEMLNALDPNNKE------GLRQEVIVDLVDQCRTYKQRVVHLVNSTADES 244 (676)
Q Consensus 193 r~n~kLLnEML~~~~P~~~e------~~dnElIqEL~~qCRsmq~rI~rLIq~t~DEe 244 (676)
+..+++-.+.|+...+++.+ ..+.+-+.++.+..+..|++|+.++++..+++
T Consensus 200 ~q~l~lA~~al~~~p~~eR~~S~lT~~i~~~~~~~i~~~i~~fRk~i~~i~~~~~~~~ 257 (271)
T TIGR02147 200 KQMIDLAKEALDALPPSERDVSTVTFGISEEAYKEIVKKIQEFRKEVLAIATKDKEED 257 (271)
T ss_pred HHHHHHHHHHHHhCCccccccceeeEecCHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 45667777888877555432 34678888888888899999998877654433
No 126
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=27.37 E-value=2e+02 Score=29.10 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCC-ccccchHHHHHHHHHHHHHHHHHHHHhh
Q 005810 197 DVLAEMLNALDPNN-KEGLRQEVIVDLVDQCRTYKQRVVHLVN 238 (676)
Q Consensus 197 kLLnEML~~~~P~~-~e~~dnElIqEL~~qCRsmq~rI~rLIq 238 (676)
--|..|..++.-++ ....-.+.++++.++|+.+|.++++|+.
T Consensus 31 aaL~~Mv~~lT~gkk~~~~~~~~~~~~~~~~~~~~~~ll~l~d 73 (184)
T PF04961_consen 31 AALGSMVANLTLGKKKYEDVEEELKEIIEKLEELREELLDLAD 73 (184)
T ss_dssp HHHHHHHHHCTTTSTTSGGGHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667787776554 3333467899999999999999998874
No 127
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=27.30 E-value=3.2e+02 Score=24.62 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCC
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGP 116 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~ 116 (676)
++..+.+.+.|.+..+-+.-.+|.+|..|++... ...+.-...++-+...++. .|.-|--.++..+...++.+.+.
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChHH
Confidence 4566677777888888889999999999999875 1122223344444444444 45566666666666666666531
Q ss_pred CCChhHHHHHHH
Q 005810 117 RARYPQYYAAYQ 128 (676)
Q Consensus 117 ~~~~p~~~~~Y~ 128 (676)
-++.+.+.|.
T Consensus 78 --vl~~L~~~y~ 87 (92)
T PF10363_consen 78 --VLPILLDEYA 87 (92)
T ss_pred --HHHHHHHHHh
Confidence 2455566664
No 128
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=27.27 E-value=5.7e+02 Score=27.98 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=73.8
Q ss_pred HHHHHHcCCCCCCcCHHHHHH-HHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHhc------ccchh
Q 005810 4 SMVDRATSDMLIGPDWAMNIE-ICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTL---LETIIKN------CGDIV 73 (676)
Q Consensus 4 ~LIekATse~l~~pDW~lilE-ICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtL---LE~cVKN------CG~~F 73 (676)
...|+-+...-+++|-+.|.+ ||..++.+++.-+.-++.|.+-.+..+.....-.|.. |+..++. ....|
T Consensus 109 tvfd~fm~GY~Pee~~~~IF~Alc~a~g~Dp~qyr~dA~~l~~~A~~~s~~~l~~~l~~~~~l~~~l~~IA~~a~~~~~f 188 (283)
T PLN00047 109 TVYDQLMEGYPSDEDRDAIFKAYIKALGEDPEQYRKDAAKLEEWARSQTGSSLVDFSSKEGEIEGILKDIAERAGSKGKF 188 (283)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcchHHHHHHHHHHHhhccCCCc
Confidence 345667777777888887765 9999999998888888888888888777766655531 2222211 23567
Q ss_pred hhhhcchHHHHHHHHHhccC--CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 005810 74 HMHVAEKNVLHEMVKIARKK--PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLR 132 (676)
Q Consensus 74 h~eVask~FLneLvKLvk~k--~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~ 132 (676)
|- ++=|-=-|.+|+..- .++ +.|..|.+.+.-...+..+-.++|+.+..
T Consensus 189 ~Y---SRlfAIGLf~LLe~a~~~d~-------~~l~~l~e~Lgls~~kv~KDLdlYrsnLe 239 (283)
T PLN00047 189 SY---SRFFAIGLFRLLELANATEP-------TALEKLCAALNINKRSVDRDLDVYRGLLS 239 (283)
T ss_pred ch---HHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHcCCCHHHHHhhHHHHHhHHH
Confidence 73 333333377776532 233 27777887776433333344566665543
No 129
>PRK14154 heat shock protein GrpE; Provisional
Probab=27.16 E-value=2.1e+02 Score=29.81 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHH
Q 005810 220 VDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 220 qEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~r 262 (676)
.-+...+..+|+|..+-++.. .-+.++..||.+=|+|.+||..
T Consensus 76 lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~ 121 (208)
T PRK14154 76 LRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLES 121 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 446667777888888877655 5788999999999999999874
No 130
>PRK14143 heat shock protein GrpE; Provisional
Probab=27.00 E-value=2.4e+02 Score=29.89 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHH
Q 005810 219 IVDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 219 IqEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~r 262 (676)
+..+...+..+|+|..+-++.. .-+.++.+||-+-|+|.++|..
T Consensus 90 ~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~ 136 (238)
T PRK14143 90 YMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQ 136 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 3456777888888888866654 6789999999999999999863
No 131
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=26.94 E-value=3.9e+02 Score=28.50 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHhcccchhhhhhc------chHHHHHHHHHhccCCC
Q 005810 23 IEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLAL-TLLETIIKNCGDIVHMHVA------EKNVLHEMVKIARKKPD 95 (676)
Q Consensus 23 lEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllAL-tLLE~cVKNCG~~Fh~eVa------sk~FLneLvKLvk~k~d 95 (676)
+-+|=+++. ..+++.+..+++-++.....+..-|| .|.|.++...-..|...-. ...+++-+.+.+... +
T Consensus 51 LGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~ 127 (298)
T PF12719_consen 51 LGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-N 127 (298)
T ss_pred HHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-C
Confidence 344444444 34777778888888767888888888 4667777775444444332 245666666666554 5
Q ss_pred hhHHHHHHHHHH
Q 005810 96 THVKEKILILID 107 (676)
Q Consensus 96 ~~VkeKILeLIq 107 (676)
.+|+..+.|-+-
T Consensus 128 ~~~~~~a~EGl~ 139 (298)
T PF12719_consen 128 PELQAIAVEGLC 139 (298)
T ss_pred HHHHHHHHHHHH
Confidence 556555544443
No 132
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=26.73 E-value=97 Score=23.77 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=18.8
Q ss_pred ChHHHHHHhhhhH-HHHHHHHHHHh
Q 005810 242 DESLLCQGLQLND-DLQRLLAKHES 265 (676)
Q Consensus 242 DEelL~eLL~lND-eLn~vL~rYE~ 265 (676)
+++.-..+|+.|+ +|.+|+..|=.
T Consensus 14 ~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 14 DEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 7777778888888 99999998853
No 133
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=26.73 E-value=1.4e+02 Score=33.26 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=49.2
Q ss_pred HHHHHHHHH--HHhCCCCHHHHHHHHHHHHHHHhcccchhhh--hhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 36 AKDVVKGIK--KRIGSRNSKVQLLALTLLETIIKNCGDIVHM--HVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 36 aKeAaRaIr--KRLks~np~vqllALtLLE~cVKNCG~~Fh~--eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
-|.|+|.|| |.|+|.| -..|+|.|=++. ++|+ |+++.-.|+||.+.-..=++..||..+..+|..-
T Consensus 45 kKIAlREIrmLKqLkH~N------LVnLiEVFrrkr--klhLVFE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai 114 (396)
T KOG0593|consen 45 KKIALREIRMLKQLKHEN------LVNLIEVFRRKR--KLHLVFEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAI 114 (396)
T ss_pred HHHHHHHHHHHHhcccch------HHHHHHHHHhcc--eeEEEeeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHh
Confidence 477899876 6677764 457899998885 5665 5689999999998766555567888877777654
No 134
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.60 E-value=1.5e+02 Score=26.24 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=28.6
Q ss_pred chHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh
Q 005810 79 EKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 79 sk~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF 113 (676)
.++||.=++.|+....+..||+++|+.|..--...
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~ 49 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSR 49 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 46788888888887788999999999988776654
No 135
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=26.57 E-value=1.3e+02 Score=33.85 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----C--CChHHHHHHhhhhHHHHHHH
Q 005810 217 EVIVDLVDQCRTYKQRVVHLVNS----T--ADESLLCQGLQLNDDLQRLL 260 (676)
Q Consensus 217 ElIqEL~~qCRsmq~rI~rLIq~----t--~DEelL~eLL~lNDeLn~vL 260 (676)
|+|+.+++.|.++......+++. . .+|+-|.+|+.+|-+|-.+|
T Consensus 259 evi~~i~~aid~is~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~al 308 (397)
T KOG1511|consen 259 EVIKAIFDAIDEISLEAVWILQRENDEFSSPKEQKLEELIRINQDLLDAL 308 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHh
Confidence 58888899999888888888873 2 34667999999999988776
No 136
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=26.54 E-value=7.4e+02 Score=26.03 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=75.8
Q ss_pred HHHHHHcCCCCCCcCHHHHHH-HHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHH---------HHHHHHhccc-ch
Q 005810 4 SMVDRATSDMLIGPDWAMNIE-ICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALT---------LLETIIKNCG-DI 72 (676)
Q Consensus 4 ~LIekATse~l~~pDW~lilE-ICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALt---------LLE~cVKNCG-~~ 72 (676)
...|+-+...-+++|-..|.+ ||..++.++..-+.-++.|.+-.+..+.....-.|. |.+++-...+ ..
T Consensus 53 t~fd~fm~GY~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia~~~~ 132 (216)
T PF11264_consen 53 TVFDRFMQGYPPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQAIASNPK 132 (216)
T ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHHHHhcCCC
Confidence 345777777778888887765 999999999888888888888888877765554442 2333322212 25
Q ss_pred hhhhhcchHHHHHHHHHhccCCC--hhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 005810 73 VHMHVAEKNVLHEMVKIARKKPD--THVKEKILILIDTWQEAFGGPRARYPQYYAAYQELL 131 (676)
Q Consensus 73 Fh~eVask~FLneLvKLvk~k~d--~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk 131 (676)
||- ++=|-=-|.+|+..-.. ..-.++.-+.|..|.+.+.-...+..+-.++|+...
T Consensus 133 f~Y---SRl~AIGL~~LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~kDL~lYrsnL 190 (216)
T PF11264_consen 133 FKY---SRLFAIGLFRLLELAGADLVKDEEKRPEALEKLSEALGLSKEKVEKDLDLYRSNL 190 (216)
T ss_pred Cch---HHHHHHHHHHHHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHhhHHHHHhHH
Confidence 663 33333336676653211 223345566677788887643323334455666543
No 137
>PRK14144 heat shock protein GrpE; Provisional
Probab=26.28 E-value=3.1e+02 Score=28.36 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHH
Q 005810 220 VDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 220 qEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~r 262 (676)
.-+...|..+|+|..+=++.. .-+.++..||.+-|+|.+||.-
T Consensus 69 lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~ 114 (199)
T PRK14144 69 VRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQL 114 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHc
Confidence 456667778888888877654 5788999999999999999863
No 138
>PRK14145 heat shock protein GrpE; Provisional
Probab=25.92 E-value=2.7e+02 Score=28.68 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHH
Q 005810 218 VIVDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 218 lIqEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~r 262 (676)
.+.-+...+..+|+|..+=++.. .-+.++.+||-+-|+|-+||..
T Consensus 67 ~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~ 114 (196)
T PRK14145 67 IAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS 114 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc
Confidence 33456777888889988877654 6789999999999999999965
No 139
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=25.60 E-value=24 Score=39.27 Aligned_cols=18 Identities=39% Similarity=0.995 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCcccccC
Q 005810 473 GMQSGGSLPPPPWEAQAA 490 (676)
Q Consensus 473 ~~~~~~~~pp~pw~~~~~ 490 (676)
|.+.|+.+||||+..+..
T Consensus 86 ~~~~~~g~ppppysp~~~ 103 (489)
T PF07415_consen 86 GQNGGNGLPPPPYSPRRQ 103 (489)
T ss_dssp ------------------
T ss_pred cCCCCCCCCCCCCCCCcc
Confidence 335566799999987744
No 140
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=25.46 E-value=2.5e+02 Score=25.25 Aligned_cols=67 Identities=7% Similarity=0.052 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC---CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Q 005810 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDP---GQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG 70 (676)
Q Consensus 3 ~~LIekATse~l~~pDW~lilEICD~Ins~~---~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG 70 (676)
.+.++..+|+..+---++ +..|..+|++.. ....-.+..+..-|++.++-+=+.|+..|.+|..-+.
T Consensus 6 ~~al~~L~dp~~PvRa~g-L~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHG-LVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCCcchHHHH-HHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 344455555554433333 334777777655 2234455555666677777777777777777765443
No 141
>COG3515 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.30 E-value=2.2e+02 Score=31.45 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=61.0
Q ss_pred HHHHHcCCCCCC-cCHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcc
Q 005810 5 MVDRATSDMLIG-PDWAMNIEICDMLNH-DPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (676)
Q Consensus 5 LIekATse~l~~-pDW~lilEICD~Ins-~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVas 79 (676)
.++++-...-.+ -||..+.++|..+.. ....-+-|+-..+-|++-.--..-.-.++||..|+.|-++.+|.++.+
T Consensus 39 e~~~~~~~~~~~~~dW~~v~~la~~L~~~~~kDlrva~~l~~A~~~~~GlaGL~eglella~l~~~~~d~l~pq~~~ 115 (346)
T COG3515 39 ELQTLLKVAEPEQVDWTAVEELALALLRARSKDLRVAAWLTRARLRTQGLAGLAEGLELLAALLANYWDALWPQLEG 115 (346)
T ss_pred HHHhccccccccccchHHHHHHHHHHHHhccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccchhhCcCCcc
Confidence 344444444445 899999999998776 666788888889999988888888889999999999999999998844
No 142
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=25.27 E-value=3.6e+02 Score=24.42 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKI 102 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKI 102 (676)
-++-++-|-+-+...+.+|-+.|.+-|=.++|.++..+-.. -.+..+.|.|++.. ++..||.-+
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~--f~~IF~~L~kl~~D-~d~~Vr~~a 88 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY--FNEIFDALCKLSAD-PDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcC-CchhHHHHH
Confidence 35566666677788999999999999999999997655431 23555666666655 567888755
No 143
>PRK13266 Thf1-like protein; Reviewed
Probab=25.14 E-value=6.6e+02 Score=26.59 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=55.7
Q ss_pred HHHHHHcCCCCCCcCHHHHHH-HHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHH---------HHHHHHhc-ccch
Q 005810 4 SMVDRATSDMLIGPDWAMNIE-ICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALT---------LLETIIKN-CGDI 72 (676)
Q Consensus 4 ~LIekATse~l~~pDW~lilE-ICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALt---------LLE~cVKN-CG~~ 72 (676)
...|+-+...-+++|-+.|.+ ||..++-++..-+.-++.|.+-.+..+.....--|. |+.++... .+..
T Consensus 58 t~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~~~l~~ia~~~~ 137 (225)
T PRK13266 58 TVFDRFMQGYRPEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGEPGGLLATLLAIANNSK 137 (225)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccccchhHHHHHHHHhcCCC
Confidence 345677777778888887765 999999999888888888888888777665544443 44444443 2246
Q ss_pred hhhhhcchHHHHHHHHHhc
Q 005810 73 VHMHVAEKNVLHEMVKIAR 91 (676)
Q Consensus 73 Fh~eVask~FLneLvKLvk 91 (676)
||- ++=|-=-|.+|+.
T Consensus 138 f~Y---SRl~AIGL~~LLe 153 (225)
T PRK13266 138 FKY---SRLFAIGLYTLLE 153 (225)
T ss_pred Cch---HHHHHHHHHHHHH
Confidence 663 3333333666664
No 144
>PHA03098 kelch-like protein; Provisional
Probab=25.02 E-value=2.4e+02 Score=32.27 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=61.0
Q ss_pred HHHHHHcCCCC--CCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHHhcccchhhh
Q 005810 4 SMVDRATSDML--IGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQ------LLALTLLETIIKNCGDIVHM 75 (676)
Q Consensus 4 ~LIekATse~l--~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vq------llALtLLE~cVKNCG~~Fh~ 75 (676)
.+|+-+-+..+ ..++..-+++++|...-.. --+.|.+.|.++|...|--.. +.+-.|.+.|.+=.-..|..
T Consensus 61 ~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~-l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~ 139 (534)
T PHA03098 61 EVIKYIYTGKINITSNNVKDILSIANYLIIDF-LINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIEL 139 (534)
T ss_pred HHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 44444443332 3344455666666665542 345677777777765543211 12224556665555556665
Q ss_pred hhcchHHH----HHHHHHhccCCChhH--HHHHHHHHHHHHHH
Q 005810 76 HVAEKNVL----HEMVKIARKKPDTHV--KEKILILIDTWQEA 112 (676)
Q Consensus 76 eVask~FL----neLvKLvk~k~d~~V--keKILeLIq~Wa~a 112 (676)
...+++|+ +.|++|++.. +..| -+.+++.+..|.+.
T Consensus 140 v~~~~~f~~l~~~~l~~ll~~~-~L~v~~E~~v~~av~~W~~~ 181 (534)
T PHA03098 140 IYNDPDFIYLSKNELIKILSDD-KLNVSSEDVVLEIIIKWLTS 181 (534)
T ss_pred HhcCchhhcCCHHHHHHHhcCC-CcCcCCHHHHHHHHHHHHhc
Confidence 56666774 4577777653 3445 34689999999764
No 145
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.73 E-value=6.2e+02 Score=30.92 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=79.2
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCc--HHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHHhccc----chhh
Q 005810 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQ--AKDVVKGIKKRIGSRNSKVQLLAL--TLLETIIKNCG----DIVH 74 (676)
Q Consensus 3 ~~LIekATse~l~~pDW~lilEICD~Ins~~~~--aKeAaRaIrKRLks~np~vqllAL--tLLE~cVKNCG----~~Fh 74 (676)
..+|.-|-+-....++. ...++-+++++.-.. -..+.|.|.+-++.......+.-= .|+|.|+.-|. +..|
T Consensus 60 ~~mi~sa~nkg~Ide~~-~~~~lk~~l~s~~~~i~~d~~lr~i~~~k~~~~l~~~l~~~n~dlvekll~~~s~~p~d~~e 138 (880)
T COG3002 60 DRMIASAPNKGEIDEPF-AAAELKQLLASHMYMIPSDYHLRWINKQKQLADLPQALAEQNSDLVEKLLIEASQQPTDPSE 138 (880)
T ss_pred HHHHHhcccccccChHH-HHHHHHHHHhccCCCCcHHHHHHHHHHHhhcccchHHHHhhchhHHHHHHHHHhcCCccccc
Confidence 45667777776666666 677788888875433 456778888877766544444333 56666655554 2222
Q ss_pred hhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCC-------CCChhHHHHHHHHHHHhccC
Q 005810 75 MHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGP-------RARYPQYYAAYQELLRAGAV 136 (676)
Q Consensus 75 ~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~-------~~~~p~~~~~Y~~Lk~kGi~ 136 (676)
.-. -|++.|-..+.....+.+-+.|-..|..|...|-++ +.+...|+.+|+.|......
T Consensus 139 n~~---~~~~t~ss~idle~ge~ln~~vn~qiik~s~~ylD~~qa~wtMP~reegffrawrelaq~dl~ 204 (880)
T COG3002 139 NWP---LLCDTVSSRIDLEHGEALNDAVNHQIIKWSKLYLDHHQADWTMPDREEGFFRAWRELAQHDLL 204 (880)
T ss_pred ccc---cccccHHHHhhhhcchHHHHHHHHHHHHHHHHHHhcccccccCCcchhHHHHHHHHHHHhChh
Confidence 211 222233322222234677888888889999887643 33556799999988654333
No 146
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=24.71 E-value=1.5e+02 Score=25.83 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=35.0
Q ss_pred HHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHh
Q 005810 64 TIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRA 133 (676)
Q Consensus 64 ~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~k 133 (676)
.+.++-|..+......=.|-+.=+..++...+..+.+++..+|..|.+..+.. ..+..+...|++-
T Consensus 9 ~ia~~lG~dW~~LAr~Lg~~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~~----at~~~L~~AL~~i 74 (84)
T cd08317 9 DISNLLGSDWPQLARELGVSETDIDLIKAENPNSLAQQAQAMLKLWLEREGKK----ATGNSLEKALKKI 74 (84)
T ss_pred HHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCc----chHHHHHHHHHHc
Confidence 34444454444332222333322233333333457899999999999987642 2344455555543
No 147
>PRK07360 FO synthase subunit 2; Reviewed
Probab=24.64 E-value=92 Score=34.52 Aligned_cols=129 Identities=12% Similarity=0.209 Sum_probs=67.8
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC-C---cHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHhcccch-hhhh
Q 005810 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDP-G---QAKDVVKGIKKRIGSRNSKVQ-LLALTLLETIIKNCGDI-VHMH 76 (676)
Q Consensus 3 ~~LIekATse~l~~pDW~lilEICD~Ins~~-~---~aKeAaRaIrKRLks~np~vq-llALtLLE~cVKNCG~~-Fh~e 76 (676)
..+++|+.+. .+++.- |+..+.+... . .--.+++.||++...+..... -.-|.+-..|..||... |...
T Consensus 8 ~~~~~~~~~g----~~ls~~-e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~G~~v~~~~~~~i~~Tn~C~~~C~fC~~~~~ 82 (371)
T PRK07360 8 EDILERARKG----KDLSKE-DALELLETTEPRRIFEILELADRLRKEQVGDTVTYVVNRNINFTNICEGHCGFCAFRRD 82 (371)
T ss_pred HHHHHHHhcC----CCCCHH-HHHHHhcCCChHHHHHHHHHHHHHHHHhcCCeEEEEeccCcccchhhhcCCccCCcccC
Confidence 4566777664 333221 3334444322 1 134677778888764332211 12356689999999752 2221
Q ss_pred --------hcchHHHHHHHHHhccC---------CCh--hHHHHHHHHHHHHHHHhCCCCCC-h-------------hHH
Q 005810 77 --------VAEKNVLHEMVKIARKK---------PDT--HVKEKILILIDTWQEAFGGPRAR-Y-------------PQY 123 (676)
Q Consensus 77 --------Vask~FLneLvKLvk~k---------~d~--~VkeKILeLIq~Wa~aF~~~~~~-~-------------p~~ 123 (676)
+...++++.+....... .++ .--++++++|....+.|.+..-. + -..
T Consensus 83 ~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~ 162 (371)
T PRK07360 83 EGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSY 162 (371)
T ss_pred CCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCH
Confidence 22333444433322211 122 23577888888888876432100 0 123
Q ss_pred HHHHHHHHHhccC
Q 005810 124 YAAYQELLRAGAV 136 (676)
Q Consensus 124 ~~~Y~~Lk~kGi~ 136 (676)
.+.|+.||..|+.
T Consensus 163 ~e~l~~LkeAGld 175 (371)
T PRK07360 163 EEVLKALKDAGLD 175 (371)
T ss_pred HHHHHHHHHcCCC
Confidence 5789999999975
No 148
>PRK14139 heat shock protein GrpE; Provisional
Probab=24.31 E-value=2.9e+02 Score=28.25 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHH
Q 005810 220 VDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLA 261 (676)
Q Consensus 220 qEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~ 261 (676)
.-+...|..+|+|+.+-++.. .-+.++.+||.+-|+|.++|.
T Consensus 56 lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~ 100 (185)
T PRK14139 56 LRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALA 100 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh
Confidence 446677888888888877654 578899999999999999985
No 149
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.31 E-value=1.7e+02 Score=27.26 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHH--------HhccCCCh---hHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK--------IARKKPDT---HVKEKILIL 105 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvK--------Lvk~k~d~---~VkeKILeL 105 (676)
+=+++.|.+.|...++.|...|+.+|+.+...- ......|..+..|+-|.+ +++...-. .=..-|-..
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~~p~l~~L~~~g~~Ll~~~lS~~~Gf~~L~~~~~v~~E 85 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSLRPSLDHLGDIGSPLLLRFLSTPSGFRYLNEIGYVEKE 85 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHcCcHHHHHHHcCHHHHHHHHcchHHHHHhcchhHHHHH
Confidence 457899999999999999999999987655543 444444544445555443 12211111 112346677
Q ss_pred HHHHHHHhC
Q 005810 106 IDTWQEAFG 114 (676)
Q Consensus 106 Iq~Wa~aF~ 114 (676)
++.|-..+-
T Consensus 86 l~~W~~~~N 94 (115)
T PF14663_consen 86 LDKWFESFN 94 (115)
T ss_pred HHHHHHccc
Confidence 788876553
No 150
>PRK14161 heat shock protein GrpE; Provisional
Probab=24.03 E-value=2.7e+02 Score=28.18 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHH
Q 005810 219 IVDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 219 IqEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~r 262 (676)
+.-+...+..+|+|..+=++.. .-+.++.+||.+=|+|.+||..
T Consensus 42 ~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~ 88 (178)
T PRK14161 42 LIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAH 88 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 3446677788888888877654 5788999999999999999863
No 151
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=23.93 E-value=5.1e+02 Score=35.14 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHhCCC----CcHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhcccchhhhhhc----chHHHHHHHH
Q 005810 18 DWAMNIEICDMLNHDP----GQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVA----EKNVLHEMVK 88 (676)
Q Consensus 18 DW~lilEICD~Ins~~----~~aKeAaRaIrKRL-ks~np~vqllALtLLE~cVKNCG~~Fh~eVa----sk~FLneLvK 88 (676)
-|..+.|||..=-..- ....+.+...--++ -|+|.++.++||..|..|..-+-+ ..++. .++||+-+..
T Consensus 1112 sLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle--~eEL~~f~FQkefLkPfe~ 1189 (1780)
T PLN03076 1112 SLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVI 1189 (1780)
T ss_pred HHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcc--hhhhhchhHHHHHHHHHHH
Confidence 4667777776422111 11223333332333 367888888888877655443321 11222 2578877888
Q ss_pred HhccCCChhHHHHHHHHHH
Q 005810 89 IARKKPDTHVKEKILILID 107 (676)
Q Consensus 89 Lvk~k~d~~VkeKILeLIq 107 (676)
++++..+.+||+.|++.|.
T Consensus 1190 im~~s~~~eVrE~ILeCv~ 1208 (1780)
T PLN03076 1190 VMRKSNAVEIRELIIRCVS 1208 (1780)
T ss_pred HHHhcCchHHHHHHHHHHH
Confidence 8887778899999998876
No 152
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.42 E-value=2.8e+02 Score=29.05 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHHHHhhhcC
Q 005810 218 VIVDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAKHESFASG 269 (676)
Q Consensus 218 lIqEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~rYE~l~~g 269 (676)
.+.-+...+..+|+|..+=++.. .-+.++.+||.+-|+|.++|.. ..+..|
T Consensus 62 ~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~-~~l~~G 115 (214)
T PRK14163 62 DLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREH-GELVGG 115 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhc-hhHHHH
Confidence 34456777888888888877754 6789999999999999999864 334444
No 153
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=23.27 E-value=2.8e+02 Score=34.48 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=65.6
Q ss_pred CCCcCHHHHHHHHH----HHhCCC-----CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHH
Q 005810 14 LIGPDWAMNIEICD----MLNHDP-----GQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLH 84 (676)
Q Consensus 14 l~~pDW~lilEICD----~Ins~~-----~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLn 84 (676)
....||....|..+ .+.... ..-.+..+.|+.|++.-|.++..+|+..|+.+-+=-+..|...+ . ....
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~-~v~p 339 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-K-NVFP 339 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-H-hhcc
Confidence 34468886655444 343322 33567888999999999999999999999988887666655432 1 2222
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 85 EMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 85 eLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
.|...++.+ -.+||+-++..+..|.....
T Consensus 340 ~lld~lkek-k~~l~d~l~~~~d~~~ns~~ 368 (815)
T KOG1820|consen 340 SLLDRLKEK-KSELRDALLKALDAILNSTP 368 (815)
T ss_pred hHHHHhhhc-cHHHHHHHHHHHHHHHhccc
Confidence 233323332 25899999999999988543
No 154
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=23.19 E-value=1e+03 Score=26.28 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=54.7
Q ss_pred CcHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc-------CCChhHHHHHHHH
Q 005810 34 GQAKDVVKGIKKR-IGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK-------KPDTHVKEKILIL 105 (676)
Q Consensus 34 ~~aKeAaRaIrKR-Lks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~-------k~d~~VkeKILeL 105 (676)
..+-|++|+..-| ...+.--+.-=|-.||.. +.-| +.|... +.+-+.++++.-.. +....=.++-...
T Consensus 96 ~~~WEVAKafMPrG~~d~~gpe~cDasALLNl-in~C-d~F~~~--d~~~v~eVI~~RN~~MHS~emkvs~~wm~~~~~~ 171 (307)
T PF15112_consen 96 TDPWEVAKAFMPRGQADKTGPEECDASALLNL-INSC-DHFKKY--DRKKVREVIKCRNEIMHSSEMKVSSQWMRDFQMK 171 (307)
T ss_pred CcHHHHHHHhcCCcccccCChhhcCHHHHHHH-HHHh-hccccc--cHHHHHHHHHHHHHhhcCcccccCHHHHHHHHHH
Confidence 3578999987766 233334445555555553 4456 467653 77778888774322 1223334445555
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHH
Q 005810 106 IDTWQEAFGGPRARYPQYYAAYQELLR 132 (676)
Q Consensus 106 Iq~Wa~aF~~~~~~~p~~~~~Y~~Lk~ 132 (676)
|+.....|..+ |.+..+|++++.
T Consensus 172 i~nll~~f~~i----pe~~~a~~~Ie~ 194 (307)
T PF15112_consen 172 IQNLLNEFRNI----PEIVAAGSRIEQ 194 (307)
T ss_pred HHHHHHHhccC----hHHHHHHHHHHH
Confidence 55555588764 778888887765
No 155
>TIGR03363 VI_chp_8 type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=23.18 E-value=2e+02 Score=31.91 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=54.4
Q ss_pred CcCHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHH
Q 005810 16 GPDWAMNIEICDMLN-HDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNV 82 (676)
Q Consensus 16 ~pDW~lilEICD~In-s~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~F 82 (676)
..||..+.++|..+- .....-+-++-.++-+++.....--..+|.||..|+.+-...+|-.....++
T Consensus 51 ~~DW~~V~~~~~~lL~~~sKDLrv~~~l~~a~~~~~Gl~Gl~~gl~ll~~ll~~~Wd~l~P~~~~~~~ 118 (353)
T TIGR03363 51 AADWPAVERLASELLKTRSKDLRLAAWLTEAWLQLRGLPGLADGLALVAGLLERYWDDVHPLLDDDDD 118 (353)
T ss_pred ccCHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcchhcCCCCCCCch
Confidence 579999999999765 5555677888888888877777777889999999999999999988765543
No 156
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=23.03 E-value=3.4e+02 Score=26.59 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHH----HhCCCCH---HHHHHHHHHHHHHHhcccchhhh------hhcchHHHHHHH
Q 005810 21 MNIEICDMLNHDPGQAKDVVKGIKK----RIGSRNS---KVQLLALTLLETIIKNCGDIVHM------HVAEKNVLHEMV 87 (676)
Q Consensus 21 lilEICD~Ins~~~~aKeAaRaIrK----RLks~np---~vqllALtLLE~cVKNCG~~Fh~------eVask~FLneLv 87 (676)
.+-++.|+|++++.----+.+.+.. +-..+++ +---.-|.+|+.++... ..|.. .|+.. ++.|.
T Consensus 4 ~vqefk~lIe~dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~A-P~~~~~~~~~glvG~P--~naiL 80 (141)
T PF12588_consen 4 VVQEFKDLIESDPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTA-PEFSDANEPVGLVGFP--MNAIL 80 (141)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhC-CcccccCCCCCccccC--hHHHH
Confidence 4678888998888665566666666 1122222 33334567888888864 56664 12222 33333
Q ss_pred HHhccC-------CChhHHHHHHHHHHHHHHHhCCC
Q 005810 88 KIARKK-------PDTHVKEKILILIDTWQEAFGGP 116 (676)
Q Consensus 88 KLvk~k-------~d~~VkeKILeLIq~Wa~aF~~~ 116 (676)
...... .++.|=+++..+|..|++-+.+.
T Consensus 81 dwpM~T~sG~a~F~~p~vN~~lK~ILn~W~~fL~sp 116 (141)
T PF12588_consen 81 DWPMGTPSGYAFFLDPDVNAQLKKILNEWGEFLSSP 116 (141)
T ss_pred HhhccChHHHHHHcCHHHHHHHHHHHHHHHHHcCCh
Confidence 322211 46799999999999999766653
No 157
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=22.96 E-value=6.3e+02 Score=26.88 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHHH
Q 005810 51 NSKVQLLALTLLETII 66 (676)
Q Consensus 51 np~vqllALtLLE~cV 66 (676)
+.....-||.-|.+|+
T Consensus 53 D~~~~~~~l~gl~~L~ 68 (262)
T PF14500_consen 53 DHACVQPALKGLLALV 68 (262)
T ss_pred cHhhHHHHHHHHHHHH
Confidence 3444444455555555
No 158
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=22.95 E-value=2.2e+02 Score=32.29 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcC--------CChHHHHHHhhhhHHHHHHHHHHHhhhcCCcc
Q 005810 215 RQEVIVDLVDQCRTYKQRVVHLVNST--------ADESLLCQGLQLNDDLQRLLAKHESFASGKSA 272 (676)
Q Consensus 215 dnElIqEL~~qCRsmq~rI~rLIq~t--------~DEelL~eLL~lNDeLn~vL~rYE~l~~g~~~ 272 (676)
+.|+...+......=-.|++|||+.. .+..+=-+.+.++.=|+..|+|||.+.+...+
T Consensus 257 d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft~fl~~ii~R~e~~~~~e~~ 322 (459)
T COG5002 257 DKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFLNEIINRFEMILKKETI 322 (459)
T ss_pred ChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHHhHHHHHHHHHHHHHHHhhHHH
Confidence 45677777776666667777777642 35567778999999999999999999666544
No 159
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=22.85 E-value=3.3e+02 Score=29.78 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=21.1
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhCC
Q 005810 91 RKKPDTHVKEKILILIDTWQEAFGG 115 (676)
Q Consensus 91 k~k~d~~VkeKILeLIq~Wa~aF~~ 115 (676)
+++.+.+|+..+.+||..|...+..
T Consensus 53 rkh~~~~I~~lAk~li~~WK~~v~~ 77 (299)
T TIGR01385 53 RKHPNEDISKLAKKIIKSWKKVVDK 77 (299)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHhh
Confidence 4457789999999999999998753
No 160
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=22.55 E-value=3e+02 Score=37.73 Aligned_cols=107 Identities=7% Similarity=0.073 Sum_probs=78.6
Q ss_pred hHHHHHHHcCCCC-CCcCHHHHHHHHHHHhCCCCcHH------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhh
Q 005810 2 VNSMVDRATSDML-IGPDWAMNIEICDMLNHDPGQAK------DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVH 74 (676)
Q Consensus 2 v~~LIekATse~l-~~pDW~lilEICD~Ins~~~~aK------eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh 74 (676)
|..||++..+... .+..-....+|-.+.+.+.++-+ .|+-.|..-|.+++..++.+|+++|..+.++ +..+
T Consensus 15 v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~--e~nk 92 (2102)
T PLN03200 15 VAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE--EDLR 92 (2102)
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHH
Confidence 4678888876643 33344557778888887765422 2667788999999999999999887777765 4567
Q ss_pred hhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 75 MHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 75 ~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
..|.....+.-|+++++.. +.+.|+.....|..-..
T Consensus 93 ~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~ 128 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSS 128 (2102)
T ss_pred HHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHc
Confidence 7777788899999999765 57888888777776654
No 161
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=22.48 E-value=2.2e+02 Score=33.85 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=64.1
Q ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhC-CCCc----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhc
Q 005810 4 SMVDRATSDMLIGPDWAMNIEICDMLNH-DPGQ----AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVA 78 (676)
Q Consensus 4 ~LIekATse~l~~pDW~lilEICD~Ins-~~~~----aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVa 78 (676)
+++-+|-|..-+-........||+.+-. ++-+ -+-.+..|.+-+.+++..-|-.++=+|.-+|-||.+...
T Consensus 434 elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek---- 509 (743)
T COG5369 434 ELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK---- 509 (743)
T ss_pred HHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh----
Confidence 3444444442222223345678886543 3333 345677788888899888888889999999999976543
Q ss_pred chHHHHH--HHHHhc--cCCChhHHHHHHHHHHHHH
Q 005810 79 EKNVLHE--MVKIAR--KKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 79 sk~FLne--LvKLvk--~k~d~~VkeKILeLIq~Wa 110 (676)
.+||.. +.|++. +.++..|++.++.++..+.
T Consensus 510 -f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 510 -FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred -hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 344444 344443 3355678888888777654
No 162
>PRK14158 heat shock protein GrpE; Provisional
Probab=22.42 E-value=4.1e+02 Score=27.37 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHH
Q 005810 220 VDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLA 261 (676)
Q Consensus 220 qEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~ 261 (676)
.-+...+..+|+|..+-++.. .-+.++.+||.+=|+|.++|.
T Consensus 64 lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~ 108 (194)
T PRK14158 64 LRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALD 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHh
Confidence 345556667777777766554 577888888888888888886
No 163
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.41 E-value=2.4e+02 Score=31.21 Aligned_cols=69 Identities=23% Similarity=0.396 Sum_probs=45.6
Q ss_pred HcCCCCCCcCHH-HHHHHHHHHhCCCCcHH-HHHH-HHHHHhCCC-CHHHHHHHHHHHHHHHhcccchhhhhhcc
Q 005810 9 ATSDMLIGPDWA-MNIEICDMLNHDPGQAK-DVVK-GIKKRIGSR-NSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (676)
Q Consensus 9 ATse~l~~pDW~-lilEICD~Ins~~~~aK-eAaR-aIrKRLks~-np~vqllALtLLE~cVKNCG~~Fh~eVas 79 (676)
|++.....+||. .+.++++.|-.+.+-++ ..+| .|..-|.|- .|++.+. .||+.|+.||....+.+++.
T Consensus 241 a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk--~Ll~~Ll~~~d~~~k~~~~~ 313 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILK--ELLEELLLKCDTQLKLEVIQ 313 (351)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHH--HHHHHHHhcCCchhHHHHHH
Confidence 344566778999 46789998877654332 2222 244445564 4555543 67899999998888888765
No 164
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.38 E-value=2.3e+02 Score=29.45 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHH
Q 005810 220 VDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 220 qEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~r 262 (676)
..+...|..+|+|..+=++.. .-+.++.+||.+=|+|.+||..
T Consensus 37 lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~ 82 (208)
T PRK14155 37 LRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAA 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhc
Confidence 445666777777777766654 5678888888888888888864
No 165
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=22.34 E-value=72 Score=37.23 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCCc------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 005810 22 NIEICDMLNHDPGQ------AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNC 69 (676)
Q Consensus 22 ilEICD~Ins~~~~------aKeAaRaIrKRLks~np~vqllALtLLE~cVKNC 69 (676)
+.=++.+|...+-. -.+.+..|||.|+|+++.|..-||+||+++|...
T Consensus 128 ~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 128 IKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 33355566665532 4678889999999999999999999999999753
No 166
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=22.31 E-value=1.6e+02 Score=31.37 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHhcccchhhhhhcchH
Q 005810 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLAL-TLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 3 ~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllAL-tLLE~cVKNCG~~Fh~eVask~ 81 (676)
..||+.|-.. .|...+ ++|-.+-..-.+.-|+..|+|..-.+....+++++ .--|.++-.....++
T Consensus 16 ~~Wi~~A~~~----~nl~~l--L~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~------- 82 (240)
T PF06175_consen 16 DAWIEQALKP----ANLPTL--LIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQ------- 82 (240)
T ss_dssp HHHHHHHHCT----H--HHH--HHHHHHHHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred cccccccccc----cccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence 3566666433 222222 45555444456788899999988777777777766 344444433322222
Q ss_pred HHHHHHHHhccCCChhHHHHHH-HHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCC
Q 005810 82 VLHEMVKIARKKPDTHVKEKIL-ILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQ 139 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKIL-eLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~ 139 (676)
-+.|.+-+..+.+..-+..++ .|+..=.+. +..|..+++.|+++|+.+..
T Consensus 83 -~~~~~~~~~~~~~~P~~~eLv~~Ms~LarEE-------L~HFeqVl~im~~RGi~l~~ 133 (240)
T PF06175_consen 83 -KNQLSKSLQPKSHYPEKEELVDKMSRLAREE-------LHHFEQVLEIMKKRGIPLGP 133 (240)
T ss_dssp ------------------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-----
T ss_pred -cccccccccccccccccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCCCCC
Confidence 233443333232221122221 222222222 34688999999999999863
No 167
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=22.27 E-value=2e+02 Score=28.51 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=41.8
Q ss_pred cccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCC
Q 005810 68 NCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPR 117 (676)
Q Consensus 68 NCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~ 117 (676)
+....|...++++.++..++++++......|+-.+|..+--|-+..+...
T Consensus 13 q~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~ 62 (149)
T PF09758_consen 13 QNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSET 62 (149)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCc
Confidence 33456788899999999999999887778999999999999988887643
No 168
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=22.17 E-value=3e+02 Score=29.89 Aligned_cols=70 Identities=14% Similarity=0.304 Sum_probs=47.9
Q ss_pred CHHHHHHHHHH--HhCCCCcHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHHHhcccchhhhhhcchHHHHHHHHHhc
Q 005810 18 DWAMNIEICDM--LNHDPGQAKDVVKGIKKRIGSRNSKVQLLA---LTLLETIIKNCGDIVHMHVAEKNVLHEMVKIAR 91 (676)
Q Consensus 18 DW~lilEICD~--Ins~~~~aKeAaRaIrKRLks~np~vqllA---LtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk 91 (676)
-|++++.+|+. |+ ...++++..|..-|.+.+..|++-| |.||=.+..+....|-.+ ...++++.|..|.+
T Consensus 209 aW~lLlt~~~~~~~~---~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~-~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 209 AWALLLTTLPDSKLE---DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYE-DMEELLEQLRELAT 283 (309)
T ss_pred HHHHHHhcCCHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccccccccc-CHHHHHHHHHHHHH
Confidence 49999988887 55 3467889999999999999998865 555544455554444222 34556666666664
No 169
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.15 E-value=5.3e+02 Score=32.14 Aligned_cols=13 Identities=46% Similarity=1.009 Sum_probs=9.5
Q ss_pred CCCCCCcccccCC
Q 005810 479 SLPPPPWEAQAAD 491 (676)
Q Consensus 479 ~~pp~pw~~~~~~ 491 (676)
...|||||..|.+
T Consensus 623 ~~~~ppw~~~p~~ 635 (830)
T PRK07003 623 RGAPPPWEDIPPD 635 (830)
T ss_pred CCCCCCcccCCcc
Confidence 4556999988763
No 170
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=22.04 E-value=2e+02 Score=25.73 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=45.4
Q ss_pred HHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005810 62 LETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (676)
Q Consensus 62 LE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kG 134 (676)
|+.+.+|-|.........-.|-+.=+..++...+..+.+++..+|..|.+..+.. ..+..++..|++-|
T Consensus 7 l~~Ia~~LG~dW~~Lar~L~vs~~dI~~I~~e~p~~l~~Q~~~~L~~W~~r~g~~----At~~~L~~AL~~i~ 75 (84)
T cd08805 7 MAVIREHLGLSWAELARELQFSVEDINRIRVENPNSLLEQSTALLNLWVDREGEN----AKMSPLYPALYSID 75 (84)
T ss_pred HHHHHHHhcchHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcc----chHHHHHHHHHHCC
Confidence 5566777787777655555555543333443333469999999999999987642 44566777776543
No 171
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=21.92 E-value=1.6e+02 Score=24.49 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhcc
Q 005810 98 VKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (676)
Q Consensus 98 VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi 135 (676)
+.+++.++|..|....+.. ..+..++..|++-|.
T Consensus 37 ~~~~~~~mL~~W~~~~~~~----at~~~L~~aL~~~~~ 70 (79)
T cd01670 37 VREQAYQLLLKWEEREGDN----ATVGNLIEALREIGR 70 (79)
T ss_pred HHHHHHHHHHHHHhccCcC----cHHHHHHHHHHHcCH
Confidence 8999999999999987642 345666666666543
No 172
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=21.73 E-value=85 Score=38.63 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=18.4
Q ss_pred ccCCCCCCCCCCCcccccC---CCCCCC-CCCCCcccccee
Q 005810 472 YGMQSGGSLPPPPWEAQAA---DSSPVA-GAQYPQQMQVTQ 508 (676)
Q Consensus 472 ~~~~~~~~~pp~pw~~~~~---~~~~~~-~~~~~~~~~~~~ 508 (676)
||-+.| |||-.+.. -++|.+ |+++|+=....+
T Consensus 4 fGgqk~-----pPg~s~~~~~~~~~paalg~~~Psl~Gas~ 39 (1194)
T KOG4246|consen 4 FGGQKG-----PPGSSVSGGAEGGSPAALGSRHPSLTGASQ 39 (1194)
T ss_pred cCCCCC-----CCCcccccccccCCCcCccCCCccccCCCc
Confidence 666665 88987754 244444 445666444443
No 173
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=21.63 E-value=1.7e+02 Score=27.87 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=37.3
Q ss_pred HHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHH
Q 005810 28 MLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILIL 105 (676)
Q Consensus 28 ~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeL 105 (676)
-++...+--.|++..|.+|.+..+|.+++.+|+- |..+.. +-|.+++.=+. .+..+|++++.|
T Consensus 47 dL~~nWeVlaEpIQTvmRr~g~~~pYE~LK~lTR--------g~~it~-----~~l~~fI~~L~--ip~~~k~~L~~l 109 (115)
T PF08328_consen 47 DLDENWEVLAEPIQTVMRRYGIPNPYEKLKELTR--------GKKITK-----EDLREFIESLD--IPEEAKARLLAL 109 (115)
T ss_dssp HHCT-GGGGHHHHHHHHHHTT-SSHHHHHHHHHT--------TS---H-----HHHHHHHHTSS--S-HHHHHHHHH-
T ss_pred HHHHCHHHHHHHHHHHHHHcCCCCHHHHHHHHHc--------CCCCCH-----HHHHHHHHhCC--CCHHHHHHHHhc
Confidence 3444555578999999999999999999999874 443322 22222222111 456777777664
No 174
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=21.62 E-value=74 Score=38.79 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhh--hhcchHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHM--HVAEKNVLHEMVKIARK--KPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~--eVask~FLneLvKLvk~--k~d~~VkeKILeLIq~Wa~a 112 (676)
|.+|..+-|.|+.-.+.-=+-+|-+||.+|...=+-|.. .+-..+|...+.+-+.+ +...+.|.||+..+-.|...
T Consensus 41 khVVqsVeKfi~kCkpe~Kl~gLYVIDSIVRqsrhq~~~~kd~F~prf~~n~~~tf~~L~~c~~edks~iIrvlNlwqkn 120 (894)
T KOG0132|consen 41 KHVVQSVEKFIKKCKPEYKLPGLYVIDSIVRQSRHQFGKEKDVFGPRFSKNFTGTFQNLYECPQEDKSDIIRVLNLWQKN 120 (894)
T ss_pred HHHHHHHHHHHHhCCcccccCeeEEehHHHHHHHHhhcccccccCCccchhHHHHHHHHHhcCHHHHHHHHHhhhhhhcc
Confidence 456666667777666666778899999999765443331 11122333333332221 24568899999999999986
Q ss_pred --hCCCCCChhHHHHHHHHHHHhcc-CCCC
Q 005810 113 --FGGPRARYPQYYAAYQELLRAGA-VFPQ 139 (676)
Q Consensus 113 --F~~~~~~~p~~~~~Y~~Lk~kGi-~FP~ 139 (676)
|+. ..|.-+.++....|. .||.
T Consensus 121 ~VfK~-----e~IqpLlDm~~~s~~~~~p~ 145 (894)
T KOG0132|consen 121 NVFKS-----EIIQPLLDMADGSGLSVFPK 145 (894)
T ss_pred cchhH-----HHHHHHHHHHhccCccccCC
Confidence 653 356666666666663 5654
No 175
>PF06209 COBRA1: Cofactor of BRCA1 (COBRA1); InterPro: IPR010405 This family consists of several cofactor of BRCA1 (COBRA1) like proteins. It is thought that COBRA1 along with BRCA1 is involved in chromatin unfolding. COBRA1 is recruited to the chromosome site by the first BRCT repeat of BRCA1, and is itself sufficient to induce chromatin unfolding. BRCA1 mutations that enhance chromatin unfolding also increase its affinity for, and recruitment of, COBRA1. It is thought that that reorganisation of higher levels of chromatin structure is an important regulated step in BRCA1-mediated nuclear functions [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.62 E-value=1.3e+03 Score=26.97 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=59.0
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccch----------------hhhhhcchHHHHHHHH
Q 005810 25 ICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI----------------VHMHVAEKNVLHEMVK 88 (676)
Q Consensus 25 ICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~----------------Fh~eVask~FLneLvK 88 (676)
+--.|..+....+-++..+-++++.++-...++ +|.++++.++.. +-.++++++|..-++.
T Consensus 308 f~~~l~~~~va~~l~l~YiLh~~~~rd~~al~r---lLp~L~~~~~d~~~~d~FlH~Lv~~L~~l~~ef~~e~fc~~vfD 384 (474)
T PF06209_consen 308 FEAYLRESRVARKLALYYILHLLKKRDKNALMR---LLPALVECDDDSAFEDIFLHLLVSSLVQLSDEFSTEDFCTIVFD 384 (474)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHH---HHHHhhhhcccccccchHHHHHHHHHHhhHHhcCChhHHHHHHH
Confidence 344567776667788888999999888776544 445555544332 2234444555555443
Q ss_pred --Hhcc-CCChhHHHHHHHHHHHHHHHhC------------CCCCChhHHHHHHHHHHHh
Q 005810 89 --IARK-KPDTHVKEKILILIDTWQEAFG------------GPRARYPQYYAAYQELLRA 133 (676)
Q Consensus 89 --Lvk~-k~d~~VkeKILeLIq~Wa~aF~------------~~~~~~p~~~~~Y~~Lk~k 133 (676)
++.. .....|++-+|.|+-.-...+. .....-....+.|..|+++
T Consensus 385 ~FlL~~~~~~~~v~rhlLRLL~~~h~kl~~~~l~~L~k~L~Pt~~~~e~~~~~y~~L~~k 444 (474)
T PF06209_consen 385 EFLLAGLSSKENVHRHLLRLLWYLHHKLPPARLETLMKALEPTSQHSEAVKELYSKLVDK 444 (474)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhccCCHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 1211 2356788877777654332222 1111112456778887654
No 176
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=21.35 E-value=2.5e+02 Score=31.64 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=55.7
Q ss_pred HHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHH
Q 005810 28 MLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILIL 105 (676)
Q Consensus 28 ~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeL 105 (676)
.+..++.-+...++.|.|.=-..|+.-+..-|..|+.++..+...-...+. ..+...|.+.+.+ .+..|-+++|.+
T Consensus 245 f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~-~~lf~~la~ci~S-~h~qVAErAl~~ 320 (409)
T PF01603_consen 245 FLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM-VPLFKRLAKCISS-PHFQVAERALYF 320 (409)
T ss_dssp HHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH-HHHHHHHHHHHTS-SSHHHHHHHHGG
T ss_pred HHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 577788889999999999988899999999999999999998765444443 3555666665554 678999998876
No 177
>PRK14147 heat shock protein GrpE; Provisional
Probab=20.80 E-value=2.9e+02 Score=27.75 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHHH
Q 005810 220 VDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 220 qEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~r 262 (676)
.-+...|..+|+|+.+-++.. ..+.++.+||.+-|+|.++|..
T Consensus 42 lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~ 87 (172)
T PRK14147 42 LRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTA 87 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhc
Confidence 446677888888888877654 6789999999999999999863
No 178
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.79 E-value=3.4e+02 Score=34.95 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhh
Q 005810 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHV 77 (676)
Q Consensus 20 ~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eV 77 (676)
.+++.+||+.=.-+.-...=...|-+||...++.|...|+.+|--|+.|---++.-++
T Consensus 980 N~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql 1037 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQL 1037 (1251)
T ss_pred cchheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccH
Confidence 4466677776666666777788899999999999999999999999988754444443
No 179
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.69 E-value=1.3e+03 Score=28.82 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC
Q 005810 19 WAMNIEICDMLNHDPGQAKDVVKGIKKRIGS 49 (676)
Q Consensus 19 W~lilEICD~Ins~~~~aKeAaRaIrKRLks 49 (676)
-..|.+|+|.|.... .+.+.+.|.+-+..
T Consensus 248 ~~~I~~lidAL~~~D--~a~al~~l~~Li~~ 276 (824)
T PRK07764 248 SALIDEAVDALAAGD--GAALFGTVDRVIEA 276 (824)
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHc
Confidence 444555666555422 44555555555544
No 180
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=20.64 E-value=3.8e+02 Score=27.19 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccc--cchHHHHHHHHHHHHHHHHHHHHhhcC----CChHHHHHHhhhhHHHHHHHHH
Q 005810 189 IQNARGIMDVLAEMLNALDPNNKEG--LRQEVIVDLVDQCRTYKQRVVHLVNST----ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 189 Le~Ar~n~kLLnEML~~~~P~~~e~--~dnElIqEL~~qCRsmq~rI~rLIq~t----~DEelL~eLL~lNDeLn~vL~r 262 (676)
.+.+...+.+|.+++..+..++.+. ..-+.|.++-.+|..++++|..-+..+ -|-+- ++.+.+.+.++++.
T Consensus 20 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~I~~lE~eaD~i~~~i~~~L~~~fitP~dReD---i~~L~~~lD~I~D~ 96 (216)
T TIGR00153 20 IEKVGECVQLLIKSFELLKSGNNEKDEELRKEIIEIEHEADEIKREIRLNLEKGAFLPNDRRD---LLELAELLDEILDS 96 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHH---HHHHHHHHHHHHHH
Confidence 4567778888988888774322211 124566777889999999999988764 23333 34444444444444
Q ss_pred HHhhh
Q 005810 263 HESFA 267 (676)
Q Consensus 263 YE~l~ 267 (676)
=+...
T Consensus 97 i~~~a 101 (216)
T TIGR00153 97 LEHAA 101 (216)
T ss_pred HHHHH
Confidence 44443
No 181
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=20.56 E-value=1.3e+02 Score=26.57 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHH
Q 005810 187 TEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCR 227 (676)
Q Consensus 187 sELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCR 227 (676)
.+|..||..+++| +||..-..++.+..+.+++.++.-..|
T Consensus 32 ~dl~~Ak~tID~L-~mL~eKTkGNL~~~E~~lL~~~L~eLR 71 (74)
T PF08899_consen 32 VDLELAKQTIDLL-AMLQEKTKGNLDEEEERLLESALYELR 71 (74)
T ss_pred CCHHHHHHHHHHH-HHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3788899999999 577776677887777777777665554
No 182
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=20.45 E-value=2.6e+02 Score=31.59 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHH
Q 005810 49 SRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK 88 (676)
Q Consensus 49 s~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvK 88 (676)
.++...-.+....+-.+||||+.-|...=-...|+..++.
T Consensus 80 ~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd 119 (373)
T PF14911_consen 80 SKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVD 119 (373)
T ss_pred cCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHH
Confidence 4588888899999999999999877753344456665443
No 183
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=20.15 E-value=1.7e+02 Score=38.29 Aligned_cols=170 Identities=22% Similarity=0.154 Sum_probs=0.0
Q ss_pred cccccCCCCCCccccCCC------CCCCCCCCcccccccccCCC------CCCCCCcCCCCCCCCCccCCCCCCCCCCCc
Q 005810 418 FHQQQNFQTPEAGLYQNG------TAPNMGSPRYEQSIYAQGSG------PAWNGQLALPQPTSPAYGMQSGGSLPPPPW 485 (676)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~pp~pw 485 (676)
|-+-|...|.-..+-|-| ++..++ |+|.-+.-.+-++ ++||--+++.+.++.-.++..+
T Consensus 1879 ~tqnq~l~pgg~r~dp~g~~~~~~~~~pt~-p~~~~~n~~~~t~~a~~~p~s~~a~~~~qq~pa~~~~q~~~-------- 1949 (2220)
T KOG3598|consen 1879 DTQNQKLAPGGRRPDPRGRRKRNSGARPTG-PRAKRANSRADTAQAAAAPTSWNAPIANQQNPAAGHAQMRG-------- 1949 (2220)
T ss_pred ccCCCCCCCCCCCCCCCCccccccccCCCC-CcccccchhhhhhhhhcCCccccccchhccCccchHHHHhc--------
Q ss_pred ccccCCCCCCCCCCCCccccceecccccc-cccCCCCCCCCCCC-CCCccccccccccccC-CCCCCCCcccccccccCC
Q 005810 486 EAQAADSSPVAGAQYPQQMQVTQVSVTHM-QPVQSGAYPQVPQS-VNGQVVGMYIQPITSN-HLSPMNNQLGQSNQLVGM 562 (676)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~qp~~~~-q~~~~~~q~~~~~q~~g~ 562 (676)
-|+..+.-..+...-++.+..- ..+ ...++.++++-++. +..|..| ++++ -+.|-+++++.++|
T Consensus 1950 -qQ~~~sqg~~~~t~vhq~~p~~---~~~l~~~~~~~~~~~~~~~glqqa~g-----~~~~m~p~g~~mp~~qs~q---- 2016 (2220)
T KOG3598|consen 1950 -QQPPMSQGSSDETKVHQRNPLN---RKKLEKRNSLADASAAAAAGLQQAMG-----NTSSMPPSGPPMPMGQSMQ---- 2016 (2220)
T ss_pred -cCccccccccCCCceeecCcch---HHHHHHhhccCCcchhhhhhhhhccC-----CCCCcCCCCCCCCcccccc----
Q ss_pred CCCCCCCCCccccccccccccccccc--chhhhhhhhhccCCCCCCchhhHhhhhc
Q 005810 563 HPQQIQGGQYVGMLPHHMQAGQMALY--HQQMYANQMAGYGYGQQPRPQYIEQQMY 616 (676)
Q Consensus 563 ~p~~~~g~q~~gm~pq~m~~~q~~my--~qqmyg~q~~gyg~~~~~~~~yl~q~m~ 616 (676)
++....+-.+||-|+|-++ || +|-|=| |-|-.-.|.+.+|-+.+-|+
T Consensus 2017 --~~~~~~~l~p~~~~q~~ps---~~~~~q~m~~--~~q~~s~q~~~~~s~~~~~~ 2065 (2220)
T KOG3598|consen 2017 --SAGATQQLQPMQKHQMGPS---MSGMNQNMGG--MNQSMSHQAPPPYSSTNEMN 2065 (2220)
T ss_pred --cCCCceecCchHhhccCCc---ccccccchhh--hhccccCCCCCCcccccccc
Done!