Query 005810
Match_columns 676
No_of_seqs 222 out of 757
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1juq_A ADP-ribosylation factor 100.0 1.3E-41 4.3E-46 330.4 17.8 149 2-155 14-169 (171)
2 1x5b_A Signal transducing adap 100.0 1.6E-41 5.6E-46 327.3 17.9 140 2-142 16-155 (163)
3 3ldz_A STAM-1, signal transduc 100.0 1.8E-41 6.1E-46 319.4 16.2 135 2-138 6-140 (140)
4 1mhq_A ADP-ribosylation factor 100.0 3.7E-41 1.3E-45 320.2 16.6 136 2-141 2-142 (148)
5 3g2s_A C-terminal fragment of 100.0 5.3E-40 1.8E-44 312.7 17.2 131 2-136 12-147 (149)
6 1elk_A Target of MYB1; superhe 100.0 7.6E-40 2.6E-44 313.7 17.3 137 2-139 17-157 (157)
7 3zyq_A Hepatocyte growth facto 100.0 6.8E-39 2.3E-43 323.3 17.2 147 2-150 9-155 (226)
8 3rru_A TOM1L1 protein; structu 100.0 1.2E-38 4.2E-43 304.2 11.9 132 2-134 17-152 (152)
9 1dvp_A HRS, hepatocyte growth 100.0 1.1E-36 3.8E-41 305.2 18.9 147 2-150 6-152 (220)
10 1oxz_A ADP-ribosylation factor 99.9 3.6E-24 1.2E-28 210.2 4.6 136 157-294 44-183 (186)
11 1o3x_A ADP-ribosylation factor 99.9 6.5E-22 2.2E-26 186.5 8.8 117 156-272 18-138 (140)
12 1naf_A ADP-ribosylation factor 99.8 4.7E-22 1.6E-26 190.6 5.9 118 157-274 28-149 (158)
13 1wrd_A TOM1, target of MYB pro 99.8 1.5E-21 5E-26 175.3 8.2 94 179-272 5-98 (103)
14 1wr6_A ADP-ribosylation factor 99.8 1.5E-20 5E-25 170.9 7.6 93 182-274 3-96 (111)
15 1vdy_A Hypothetical protein (R 98.2 4.9E-06 1.7E-10 78.5 9.1 104 3-109 13-128 (140)
16 1sz9_A PCF11 protein; RNA poly 98.0 3.7E-05 1.3E-09 72.5 11.7 97 17-115 22-118 (144)
17 1xgw_A Epsin 4; ENTH, enthopro 97.7 0.00027 9.1E-09 69.0 12.9 107 2-111 35-152 (176)
18 1inz_A EPS15-interacting porte 97.6 0.00029 9.8E-09 67.0 10.6 108 2-110 24-139 (148)
19 1eyh_A Epsin; superhelix of he 97.4 0.00038 1.3E-08 65.8 8.8 106 2-111 6-122 (144)
20 3onk_A Epsin-3, ENT3; helix, p 97.3 0.00079 2.7E-08 64.1 9.0 107 2-111 12-129 (150)
21 2pjw_H Uncharacterized protein 96.7 0.0014 4.8E-08 57.2 4.7 75 193-269 9-85 (88)
22 4flb_A Regulation of nuclear P 96.7 0.0043 1.5E-07 56.8 7.9 93 19-112 21-113 (132)
23 2pjw_V Vacuolar protein sortin 96.2 0.023 7.7E-07 49.9 9.2 78 187-269 6-83 (91)
24 3d9j_A RNA-binding protein 16; 96.1 0.012 4E-07 55.4 7.4 91 21-112 25-120 (145)
25 4fu3_A Regulation of nuclear P 95.2 0.011 3.8E-07 54.1 3.6 91 20-112 21-114 (135)
26 2qk2_A LP04448P; mini spindles 94.8 0.23 7.8E-06 48.4 11.9 94 16-112 26-128 (242)
27 1hx8_A Synapse-enriched clathr 94.0 0.17 6E-06 52.6 9.6 74 2-75 24-97 (299)
28 3zyl_A Phosphatidylinositol-bi 93.7 0.21 7.2E-06 51.5 9.4 72 2-73 29-100 (271)
29 2km4_A Regulator of TY1 transp 93.6 0.34 1.2E-05 45.1 9.9 91 21-112 21-116 (142)
30 3zym_A Phosphatidylinositol-bi 93.3 0.25 8.6E-06 51.9 9.3 72 2-73 29-100 (310)
31 2qk1_A Protein STU2; STU2P, XM 93.0 0.62 2.1E-05 46.6 11.3 94 36-133 144-240 (249)
32 3b2a_A TON_1937, putative unch 92.6 0.24 8.3E-06 50.7 7.7 93 36-130 31-123 (265)
33 2qk1_A Protein STU2; STU2P, XM 91.6 0.97 3.3E-05 45.1 10.7 98 15-114 26-136 (249)
34 4ffb_C Protein STU2; tubulin f 89.9 0.54 1.8E-05 47.1 7.0 75 36-114 137-215 (278)
35 4hxt_A De novo protein OR329; 88.5 1.4 4.8E-05 41.6 8.5 107 2-111 4-115 (252)
36 3clj_A Protein NRD1; CTD-inter 87.3 1.4 4.9E-05 42.1 7.6 95 18-112 21-130 (157)
37 4ffb_C Protein STU2; tubulin f 86.8 2.1 7.2E-05 42.7 9.0 98 14-112 18-133 (278)
38 2qk2_A LP04448P; mini spindles 86.2 6.7 0.00023 37.8 12.1 77 35-114 130-208 (242)
39 4db6_A Armadillo repeat protei 84.7 5.6 0.00019 36.8 10.3 70 39-110 139-208 (210)
40 1xqr_A HSPBP1 protein; armadil 83.2 2.6 9E-05 43.4 8.0 88 21-110 145-237 (296)
41 4hxt_A De novo protein OR329; 81.1 8.3 0.00028 36.2 10.1 74 39-114 171-244 (252)
42 3dad_A FH1/FH2 domain-containi 78.9 60 0.0021 34.5 16.6 162 38-247 160-325 (339)
43 2jdq_A Importin alpha-1 subuni 78.3 6 0.00021 40.8 8.7 72 38-110 107-178 (450)
44 1ibr_B P95, importin beta-1 su 76.7 14 0.00049 37.9 11.0 92 36-130 364-456 (462)
45 4db6_A Armadillo repeat protei 76.1 11 0.00037 34.9 9.0 70 39-110 97-166 (210)
46 3dad_A FH1/FH2 domain-containi 74.5 12 0.00042 39.8 9.8 94 39-136 203-307 (339)
47 4db8_A Armadillo-repeat protei 74.2 8 0.00027 36.8 7.8 70 39-110 97-166 (252)
48 4b8j_A Importin subunit alpha- 73.2 11 0.00036 40.6 9.2 73 39-112 161-233 (528)
49 2of3_A ZYG-9; multifunctional 71.6 21 0.0007 36.7 10.5 96 17-114 58-164 (266)
50 3f1i_S STAM-1, signal transduc 71.5 21 0.00072 30.3 8.6 71 195-268 6-76 (77)
51 4db8_A Armadillo-repeat protei 71.3 8.9 0.00031 36.4 7.3 70 39-110 55-124 (252)
52 1xqr_A HSPBP1 protein; armadil 70.1 7.6 0.00026 39.9 6.9 71 39-110 82-153 (296)
53 3ltj_A Alpharep-4; protein eng 69.4 28 0.00096 31.9 10.2 78 17-109 26-103 (201)
54 3ltm_A Alpha-REP4; protein eng 67.6 14 0.00048 34.3 7.7 80 15-109 91-170 (211)
55 3f1i_H Hepatocyte growth facto 67.4 14 0.00046 32.7 6.8 71 189-261 6-76 (98)
56 2of3_A ZYG-9; multifunctional 67.4 17 0.00059 37.2 8.8 72 36-114 165-239 (266)
57 3ltm_A Alpha-REP4; protein eng 66.9 30 0.001 32.0 9.9 80 16-110 30-109 (211)
58 1ibr_B P95, importin beta-1 su 66.5 20 0.00069 36.8 9.3 75 35-111 125-203 (462)
59 3ltj_A Alpharep-4; protein eng 65.8 25 0.00086 32.3 9.0 81 15-110 86-166 (201)
60 2jdq_A Importin alpha-1 subuni 65.3 23 0.00078 36.4 9.4 73 38-111 318-390 (450)
61 3nmw_A APC variant protein; AR 64.9 14 0.00049 38.8 7.9 71 39-109 128-198 (354)
62 1te4_A Conserved protein MTH18 63.7 29 0.00099 30.2 8.6 57 37-106 72-128 (131)
63 2z6h_A Catenin beta-1, beta-ca 63.6 21 0.00072 39.7 9.4 71 39-111 99-169 (644)
64 3tt9_A Plakophilin-2; cell adh 62.4 19 0.00066 35.9 7.9 71 39-110 53-123 (233)
65 2z6g_A B-catenin; FULL-length, 61.0 17 0.00058 42.0 8.3 73 36-109 148-220 (780)
66 1hu3_A EIF4GII; heat repeat, t 60.5 35 0.0012 34.3 9.6 92 19-114 147-242 (260)
67 1wa5_B Importin alpha subunit; 59.9 29 0.00098 37.3 9.4 73 39-112 384-458 (530)
68 4b8j_A Importin subunit alpha- 59.8 17 0.00057 39.0 7.4 74 37-110 73-146 (528)
69 1w63_A Adapter-related protein 59.2 27 0.00093 39.0 9.3 57 17-73 289-348 (618)
70 2bpt_A Importin beta-1 subunit 58.5 40 0.0014 37.9 10.6 77 37-115 638-715 (861)
71 1qgr_A Protein (importin beta 57.9 56 0.0019 36.8 11.6 77 36-115 364-441 (876)
72 2z6g_A B-catenin; FULL-length, 57.2 26 0.00088 40.5 8.9 71 39-111 235-305 (780)
73 4fdd_A Transportin-1; heat rep 56.6 89 0.0031 35.7 13.2 72 35-109 439-510 (852)
74 1b3u_A Protein (protein phosph 56.1 26 0.00088 37.3 8.1 68 37-109 518-585 (588)
75 1jdh_A Beta-catenin; beta-cate 55.7 36 0.0012 35.9 9.1 71 39-111 102-172 (529)
76 1wjt_A Transcription elongatio 55.6 21 0.00072 31.6 6.1 22 94-115 67-88 (103)
77 2z6h_A Catenin beta-1, beta-ca 55.2 33 0.0011 38.0 9.1 72 37-109 13-84 (644)
78 2bpt_A Importin beta-1 subunit 54.4 1.3E+02 0.0045 33.6 13.9 89 23-114 436-532 (861)
79 1jdh_A Beta-catenin; beta-cate 54.3 36 0.0012 35.8 8.8 73 36-109 15-87 (529)
80 3grl_A General vesicular trans 53.6 85 0.0029 36.2 12.1 73 38-111 122-195 (651)
81 1wa5_B Importin alpha subunit; 52.9 22 0.00075 38.2 7.0 70 39-109 429-508 (530)
82 1xm9_A Plakophilin 1; armadill 52.6 47 0.0016 35.5 9.5 73 38-111 44-116 (457)
83 1b3u_A Protein (protein phosph 52.5 59 0.002 34.5 10.2 73 37-114 440-512 (588)
84 3nmz_A APC variant protein; pr 51.4 29 0.00099 38.0 7.6 73 38-110 243-315 (458)
85 2vgl_A Adaptor protein complex 50.6 39 0.0013 38.0 8.8 35 36-70 327-361 (621)
86 3l6x_A Catenin delta-1; cateni 50.4 22 0.00075 40.3 6.6 68 39-106 91-158 (584)
87 1oyz_A Hypothetical protein YI 49.6 55 0.0019 31.7 8.7 58 37-109 191-248 (280)
88 3ul1_B Importin subunit alpha- 49.3 28 0.00096 37.7 7.2 70 39-109 402-476 (510)
89 2vgl_B AP-2 complex subunit be 49.2 42 0.0014 37.1 8.7 87 19-107 139-227 (591)
90 1qgr_A Protein (importin beta 48.4 1.5E+02 0.0051 33.3 13.1 96 16-114 377-482 (876)
91 4fdd_A Transportin-1; heat rep 47.0 89 0.003 35.7 11.2 77 37-115 399-475 (852)
92 2vgl_B AP-2 complex subunit be 46.9 46 0.0016 36.8 8.5 74 33-111 116-189 (591)
93 1oyz_A Hypothetical protein YI 45.0 57 0.002 31.5 8.0 29 37-65 89-118 (280)
94 3tjz_B Coatomer subunit gamma; 43.9 16 0.00056 38.8 4.1 51 19-69 157-207 (355)
95 1w63_A Adapter-related protein 43.1 71 0.0024 35.6 9.4 81 42-134 354-435 (618)
96 1i5n_A Chemotaxis protein CHEA 42.7 1.9E+02 0.0065 26.4 10.7 75 188-265 12-107 (146)
97 2vgl_A Adaptor protein complex 41.9 1E+02 0.0034 34.7 10.4 81 22-109 504-587 (621)
98 3tpo_A Importin subunit alpha- 41.2 67 0.0023 34.8 8.5 72 38-109 76-147 (529)
99 2lp4_A Chemotaxis protein CHEA 40.7 1.7E+02 0.0059 28.5 10.7 74 189-265 13-107 (225)
100 3tt9_A Plakophilin-2; cell adh 40.5 53 0.0018 32.7 7.0 71 39-111 9-81 (233)
101 2vso_E Eukaryotic initiation f 39.8 1.2E+02 0.004 30.9 9.6 86 21-110 176-278 (284)
102 1u6g_C TIP120 protein, CAND1; 39.6 1.4E+02 0.0046 35.8 11.5 75 36-113 131-206 (1230)
103 1xm9_A Plakophilin 1; armadill 39.2 48 0.0016 35.4 6.9 70 40-111 4-73 (457)
104 3ul1_B Importin subunit alpha- 38.3 98 0.0033 33.4 9.3 70 39-109 359-428 (510)
105 3tpo_A Importin subunit alpha- 37.7 79 0.0027 34.2 8.4 71 37-109 250-320 (529)
106 3kyj_A CHEA3, putative histidi 37.5 1.8E+02 0.006 26.8 9.6 74 189-265 17-111 (144)
107 1te4_A Conserved protein MTH18 37.1 86 0.003 27.0 7.2 58 40-110 44-101 (131)
108 3ayh_A DNA-directed RNA polyme 36.6 40 0.0014 31.0 5.0 56 21-76 55-122 (136)
109 3b2a_A TON_1937, putative unch 33.9 1.2E+02 0.0039 31.3 8.2 70 36-110 148-217 (265)
110 4f52_E Glomulin; cullin-ring E 32.6 1.5E+02 0.0051 33.6 9.8 90 37-127 316-410 (596)
111 2qdj_A Retinoblastoma-associat 32.5 1.3E+02 0.0045 31.4 8.6 102 20-130 4-121 (304)
112 1u6g_C TIP120 protein, CAND1; 32.3 1.3E+02 0.0043 36.1 9.7 73 39-113 435-508 (1230)
113 2l7a_A Talin-1; vinculin, bund 32.3 83 0.0028 29.1 6.3 49 214-262 68-123 (131)
114 1fad_A Protein (FADD protein); 32.2 37 0.0013 29.0 3.8 35 96-134 51-85 (99)
115 2x1g_F Cadmus; transport prote 30.5 1.1E+02 0.0038 35.5 8.6 85 25-114 533-618 (971)
116 1o5h_A Formiminotetrahydrofola 30.1 1.4E+02 0.0048 29.6 8.0 42 197-238 48-90 (214)
117 2wpv_A GET4, UPF0363 protein Y 29.3 1.5E+02 0.0051 30.9 8.5 72 52-129 70-142 (312)
118 2o71_A Death domain-containing 28.9 50 0.0017 29.6 4.2 69 63-135 28-96 (115)
119 2x19_B Importin-13; nuclear tr 28.9 53 0.0018 37.9 5.5 69 38-110 529-598 (963)
120 2of5_A Death domain-containing 28.3 56 0.0019 29.2 4.4 70 62-135 27-96 (114)
121 2p6v_A Transcription initiatio 27.8 62 0.0021 29.3 4.5 33 80-112 23-56 (114)
122 3l6x_A Catenin delta-1; cateni 27.0 1.2E+02 0.0042 34.2 7.9 72 37-110 47-118 (584)
123 3ezq_B Protein FADD; apoptosis 27.0 65 0.0022 29.2 4.6 67 62-133 9-76 (122)
124 4ani_A Protein GRPE; chaperone 26.9 2.2E+02 0.0075 28.3 8.7 42 220-261 83-127 (213)
125 2ii0_A SOS-1, SON of sevenless 26.7 5E+02 0.017 28.2 12.6 85 2-92 47-161 (490)
126 2lch_A Protein OR38; structura 25.9 2.1E+02 0.0071 24.6 7.6 72 189-263 12-104 (113)
127 3nmw_A APC variant protein; AR 25.6 1.1E+02 0.0037 32.0 6.7 71 39-111 264-334 (354)
128 1pqv_S STP-alpha, transcriptio 25.4 1.2E+02 0.0041 31.5 6.9 25 91-115 54-78 (309)
129 3now_A UNC-45 protein, SD10334 23.8 1.1E+02 0.0038 36.0 6.9 68 39-107 709-778 (810)
130 3ibv_A Exportin-T; karyopherin 23.2 3.4E+02 0.012 32.3 11.1 106 3-112 9-120 (980)
131 1q2z_A ATP-dependent DNA helic 22.8 2.3E+02 0.0078 25.3 7.4 69 22-91 6-78 (120)
132 1hs7_A Syntaxin VAM3; UP-and-D 22.4 3.2E+02 0.011 23.9 8.0 80 189-269 12-93 (97)
133 2hfi_A Hypothetical protein YP 22.3 1.5E+02 0.0052 27.4 6.1 75 12-89 29-106 (131)
134 1x4t_A Hypothetical protein LO 21.4 40 0.0014 29.5 1.9 15 248-262 53-67 (92)
135 3opb_A SWI5-dependent HO expre 21.2 1.8E+02 0.0062 34.2 7.9 80 34-114 330-409 (778)
136 4e18_B Catenin alpha-1; four h 21.1 1.2E+02 0.0042 24.5 4.5 21 219-239 33-53 (59)
137 2hy6_A General control protein 20.8 1E+02 0.0036 22.2 3.6 27 243-269 7-33 (34)
138 3m1i_C Exportin-1; heat repeat 20.5 1.5E+02 0.0051 35.1 7.3 43 31-73 533-575 (1049)
139 2lig_A Aspartate receptor; che 20.3 2E+02 0.0069 24.5 6.4 54 215-268 92-149 (164)
No 1
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=1.3e-41 Score=330.42 Aligned_cols=149 Identities=29% Similarity=0.451 Sum_probs=133.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++++|||||++.+.++||++|++|||+||+++++++||+|+|+|||+|+|+++|++||+|||+||||||++||.+|++++
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~ 93 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR 93 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCC--CCCCCCCCCCCCCCCCC
Q 005810 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVF--PQRSERSAPVFTPPQTH 154 (676)
Q Consensus 82 FLneLvKLvk~k-----~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~F--P~~~e~~~piftPp~t~ 154 (676)
||++|+++++++ ++..||+|||++|+.|+++|++ ++.|.++|++||++||.| |..+ .++++|+||.++
T Consensus 94 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~~~i~~~y~~Lk~~G~~f~~P~~~-~~~~~f~~p~~~ 168 (171)
T 1juq_A 94 FLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE----EAKIKDAYHMLKRQGIVQSDPPIP-VDRTLIPSPPPR 168 (171)
T ss_dssp HHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSCSSCCCBC-CCTTCC------
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHCCCCCCCCCCC-ccccCCCCCCCC
Confidence 999999999754 5789999999999999999985 478999999999999998 7665 346799987655
Q ss_pred C
Q 005810 155 P 155 (676)
Q Consensus 155 p 155 (676)
+
T Consensus 169 ~ 169 (171)
T 1juq_A 169 P 169 (171)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=100.00 E-value=1.6e-41 Score=327.26 Aligned_cols=140 Identities=30% Similarity=0.557 Sum_probs=134.8
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++.+|||||++.+.++||++|++|||+||.++++++||+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCC
Q 005810 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSE 142 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~~e 142 (676)
||++|++|+++++++.||+|||++|+.|+++|++++ +|..|.++|++||++||.||.++.
T Consensus 96 Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP~~~~ 155 (163)
T 1x5b_A 96 FATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP-QFSLISATIKSMKEEGITFPPAGS 155 (163)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS-TTHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999988999999999999999999999865 589999999999999999998764
No 3
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=1.8e-41 Score=319.36 Aligned_cols=135 Identities=29% Similarity=0.566 Sum_probs=129.9
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
.+++||||||+.+.++||++|++|||+||+++++++||+|+|||||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 6 ~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~ 85 (140)
T 3ldz_A 6 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRD 85 (140)
T ss_dssp THHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCC
Q 005810 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFP 138 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP 138 (676)
|+++|+++++ +++..||+||+++|+.|+++|++++ +|..|.++|++||++||.||
T Consensus 86 Fl~el~~l~~-~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 86 FASEVSNVLN-KGHPKVCEKLKALMVEWTDEFKNDP-QLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHTTCG-GGTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHccCcCc
Confidence 9999999996 4789999999999999999999864 58889999999999999998
No 4
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=3.7e-41 Score=320.21 Aligned_cols=136 Identities=26% Similarity=0.433 Sum_probs=129.8
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++++|||||++.+.++||++|++|||+||+++.+++||+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 81 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFR 81 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCC
Q 005810 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRS 141 (676)
Q Consensus 82 FLneLvKLvk~k-----~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~~ 141 (676)
||++|+++++++ ++..||+|||++|+.|+++|++ .+.|.++|++||++||.||...
T Consensus 82 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~y~~Lk~~G~~Fp~~~ 142 (148)
T 1mhq_A 82 FLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE----DIKIRDAYQMLKKQGIIKQDPK 142 (148)
T ss_dssp HHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSSCSCCC
T ss_pred HHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHcCCCCCCCC
Confidence 999999999853 6889999999999999999986 4779999999999999999664
No 5
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=5.3e-40 Score=312.69 Aligned_cols=131 Identities=31% Similarity=0.440 Sum_probs=126.0
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++.+|+||||+.+.++||++|++|||+||+++++++||+|+|+|||+|+|+++|++||+|||+||||||++||.+|++++
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccC
Q 005810 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAV 136 (676)
Q Consensus 82 FLneLvKLvk~k-----~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~ 136 (676)
||++|+|+++++ ++..||+|||++|+.|+++|++ .++|.++|++||++||+
T Consensus 92 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 92 FLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE----EVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC----CchHHHHHHHHHHCcCc
Confidence 999999999764 7889999999999999999986 47899999999999986
No 6
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=7.6e-40 Score=313.66 Aligned_cols=137 Identities=38% Similarity=0.671 Sum_probs=129.4
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIG-SRNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLk-s~np~vqllALtLLE~cVKNCG~~Fh~eVask 80 (676)
++.+|||||++.+.++||++|++|||+||+++++++||+|+|+|||+ ++|+++|++||+|||+||||||++||.+|+++
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 57899999999999999999999999999999999999999999998 59999999999999999999999999999999
Q ss_pred HHHHH-HHHHhccC--CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCC
Q 005810 81 NVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQ 139 (676)
Q Consensus 81 ~FLne-LvKLvk~k--~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~ 139 (676)
+||++ |+|++.++ ++..||+|||++|+.|+++|++++ +|..|.++|++||++||.||.
T Consensus 97 ~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p-~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 97 DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSP-DLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHHcCCCCCC
Confidence 99999 89999654 457999999999999999999764 589999999999999999993
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=100.00 E-value=6.8e-39 Score=323.26 Aligned_cols=147 Identities=35% Similarity=0.674 Sum_probs=138.3
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++++|||||++.+.++||++|++|||+||+++++++||+|+|+|||+++|+++|++||+|||+||||||.+||.+|++++
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~ 88 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ 88 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 005810 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTP 150 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~~e~~~piftP 150 (676)
||++|++|++++++..||+|||+||+.|+++|+++. +|+.|.++|++||++||.||..++. +.+|+.
T Consensus 89 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP~~~~~-damf~~ 155 (226)
T 3zyq_A 89 TMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP-KYKVVQDTYQIMKVEGHVFPEFKES-DAMFAA 155 (226)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHTCCCCCCCGG-GGCCCC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCCCcccchhH-HHhhhc
Confidence 999999999988999999999999999999999864 6899999999999999999987643 346643
No 8
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=304.24 Aligned_cols=132 Identities=30% Similarity=0.565 Sum_probs=124.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS-RNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks-~np~vqllALtLLE~cVKNCG~~Fh~eVask 80 (676)
++.+||||||+.+.++||++|+||||+||++++++|||+|+|+|||++ +|+++|++||+|||+||||||++||.+|+++
T Consensus 17 ~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask 96 (152)
T 3rru_A 17 VGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKK 96 (152)
T ss_dssp HHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSH
T ss_pred HHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 689999999999999999999999999999999999999999999996 6999999999999999999999999999999
Q ss_pred HHHHH-HHHHhccC--CChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005810 81 NVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (676)
Q Consensus 81 ~FLne-LvKLvk~k--~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kG 134 (676)
+|+++ |+|+++++ .+..||+|||++|+.|+++|++++ ++..|.++|++|+++|
T Consensus 97 ~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p-~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 97 EFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGV-DVSEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSC-CCHHHHHHHHHHHHC-
T ss_pred HhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHCc
Confidence 99998 89999765 566899999999999999999875 6999999999999998
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=100.00 E-value=1.1e-36 Score=305.25 Aligned_cols=147 Identities=31% Similarity=0.524 Sum_probs=136.9
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
++.+|||||++.+.++||++|++|||+||.++++++||+|+|+|||+++|+++|++||+|||+||||||.+||.+|++++
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~ 85 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE 85 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 005810 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTP 150 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~FP~~~e~~~piftP 150 (676)
||++|++++++.++..||+|||++|+.|+++|+++. +|..+.++|+.|+++|+.||...+ .+++|+.
T Consensus 86 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~~~~i~~~y~~Lk~~G~~FP~~~e-~~a~f~~ 152 (220)
T 1dvp_A 86 NCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD-KYQAIKDTMTILKAKGHTFPELRE-ADAMFTA 152 (220)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS-SCCHHHHHHHHHHHTTCCCCCCCC----CCCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHhhcCcccccccc-ccccccc
Confidence 999999999888889999999999999999999874 688999999999999999998753 4567763
No 10
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.89 E-value=3.6e-24 Score=210.17 Aligned_cols=136 Identities=18% Similarity=0.324 Sum_probs=102.7
Q ss_pred CCCCCCCCCchhh--hHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCcccc-chHHHHHHHHHHHHHHHHH
Q 005810 157 TSYPQNFRNPEHQ--QEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGL-RQEVIVDLVDQCRTYKQRV 233 (676)
Q Consensus 157 S~~P~~lr~a~~~--q~~ae~s~~~E~~~~slsELe~Ar~n~kLLnEML~~~~P~~~e~~-dnElIqEL~~qCRsmq~rI 233 (676)
+++|+|++.|+++ .++.++..+.|+.+++.+||++|+++++||+|||++++|++.... ++|+++|||++||++|++|
T Consensus 44 s~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i 123 (186)
T 1oxz_A 44 SSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 123 (186)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHH
Confidence 5677788888765 244455666777777889999999999999999999999988888 8999999999999999999
Q ss_pred HHHhhcC-CChHHHHHHhhhhHHHHHHHHHHHhhhcCCcccccccCCCCCcCCCccccccCC
Q 005810 234 VHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDVD 294 (676)
Q Consensus 234 ~rLIq~t-~DEelL~eLL~lNDeLn~vL~rYE~l~~g~~~~~~~~~k~~~~~~~~~~LiD~~ 294 (676)
++||+++ +||++|++||++||+|++||.+|+++++|+...+.....+. ++++++|+|+.
T Consensus 124 ~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~~~~~~--~~~~~~l~dl~ 183 (186)
T 1oxz_A 124 FRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSI--PGSTSALLDLS 183 (186)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHHHCC-----------------------
T ss_pred HHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCccccCCCC--CCCcccccCCc
Confidence 9999877 68999999999999999999999999999987543222222 25667999984
No 11
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.85 E-value=6.5e-22 Score=186.48 Aligned_cols=117 Identities=17% Similarity=0.322 Sum_probs=97.6
Q ss_pred CCCCCCCCCCchhh--hHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCcccc-chHHHHHHHHHHHHHHHH
Q 005810 156 LTSYPQNFRNPEHQ--QEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGL-RQEVIVDLVDQCRTYKQR 232 (676)
Q Consensus 156 ~S~~P~~lr~a~~~--q~~ae~s~~~E~~~~slsELe~Ar~n~kLLnEML~~~~P~~~e~~-dnElIqEL~~qCRsmq~r 232 (676)
++++|+|++.|+++ .++.++..++++.+++.+||++|+++++||+|||++++|++.... +.|+++|||++||++|++
T Consensus 18 rs~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~ 97 (140)
T 1o3x_A 18 KSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPT 97 (140)
T ss_dssp ---------CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChhhHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 36788999999976 344556666777777889999999999999999999999988877 899999999999999999
Q ss_pred HHHHhhcC-CChHHHHHHhhhhHHHHHHHHHHHhhhcCCcc
Q 005810 233 VVHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSA 272 (676)
Q Consensus 233 I~rLIq~t-~DEelL~eLL~lNDeLn~vL~rYE~l~~g~~~ 272 (676)
|++||+++ +||++|++||.+||+|++||.+|+++++|..+
T Consensus 98 i~~li~e~~ddee~l~elL~~ND~ln~vl~kY~~~~~g~~~ 138 (140)
T 1o3x_A 98 LFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEV 138 (140)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC
Confidence 99999887 68899999999999999999999999999876
No 12
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.85 E-value=4.7e-22 Score=190.62 Aligned_cols=118 Identities=17% Similarity=0.324 Sum_probs=96.5
Q ss_pred CCCCCCCCCchhh--hHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCcccc-chHHHHHHHHHHHHHHHHH
Q 005810 157 TSYPQNFRNPEHQ--QEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGL-RQEVIVDLVDQCRTYKQRV 233 (676)
Q Consensus 157 S~~P~~lr~a~~~--q~~ae~s~~~E~~~~slsELe~Ar~n~kLLnEML~~~~P~~~e~~-dnElIqEL~~qCRsmq~rI 233 (676)
|+.|+|++.|+++ .++.++..+.|+.+++.+||++|+++++||+|||++++|++.... +.|+++|||++||++|++|
T Consensus 28 s~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i 107 (158)
T 1naf_A 28 SSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 107 (158)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHH
T ss_pred cCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 4677889999876 344556666777777889999999999999999999999988877 8999999999999999999
Q ss_pred HHHhhcC-CChHHHHHHhhhhHHHHHHHHHHHhhhcCCcccc
Q 005810 234 VHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSAQT 274 (676)
Q Consensus 234 ~rLIq~t-~DEelL~eLL~lNDeLn~vL~rYE~l~~g~~~~~ 274 (676)
++||+++ +||++|++||.+||+|++||.+|+++++|+...+
T Consensus 108 ~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~ 149 (158)
T 1naf_A 108 FRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNG 149 (158)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCC
Confidence 9999887 6899999999999999999999999999988743
No 13
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.84 E-value=1.5e-21 Score=175.33 Aligned_cols=94 Identities=31% Similarity=0.453 Sum_probs=87.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHhhhhHHHHH
Q 005810 179 SEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQR 258 (676)
Q Consensus 179 ~E~~~~slsELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t~DEelL~eLL~lNDeLn~ 258 (676)
+|..+++.+||++|+++++||+|||++++|++++..++|+|+|||++||++|+||++||+.++||++|++||++||+|++
T Consensus 5 ~eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~ 84 (103)
T 1wrd_A 5 SEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNN 84 (103)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHH
Confidence 34445567899999999999999999999999888899999999999999999999999988999999999999999999
Q ss_pred HHHHHHhhhcCCcc
Q 005810 259 LLAKHESFASGKSA 272 (676)
Q Consensus 259 vL~rYE~l~~g~~~ 272 (676)
||.||+++++|+..
T Consensus 85 vl~ry~~~~~~~~~ 98 (103)
T 1wrd_A 85 VFLRHERFERFRTG 98 (103)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999998764
No 14
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.81 E-value=1.5e-20 Score=170.91 Aligned_cols=93 Identities=22% Similarity=0.368 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhcC-CChHHHHHHhhhhHHHHHHH
Q 005810 182 PTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNST-ADESLLCQGLQLNDDLQRLL 260 (676)
Q Consensus 182 ~~~slsELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t-~DEelL~eLL~lNDeLn~vL 260 (676)
.+++.+||++++++++||+|||++++|++.+..+.|+++|||.+||+||++|++||+++ +||++|++||++||+|++||
T Consensus 3 ~~k~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~vi 82 (111)
T 1wr6_A 3 VTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVI 82 (111)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHHH
Confidence 45667899999999999999999999998888889999999999999999999999887 58999999999999999999
Q ss_pred HHHHhhhcCCcccc
Q 005810 261 AKHESFASGKSAQT 274 (676)
Q Consensus 261 ~rYE~l~~g~~~~~ 274 (676)
+||+++++|+...+
T Consensus 83 ~rY~~~~~g~~~~~ 96 (111)
T 1wr6_A 83 NSYKTIIEGQVING 96 (111)
T ss_dssp THHHHTTTCC----
T ss_pred HHHHHHhcCCCCCC
Confidence 99999999998744
No 15
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.17 E-value=4.9e-06 Score=78.48 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=81.1
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCc-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 005810 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQ-AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (676)
Q Consensus 3 ~~LIekATse~l~~pDW~lilEICD~Ins~~~~-aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~ 81 (676)
+.+|.+||++.-..+-=.+..|||++....... ..|.+..|-|||+++++++.+-||.||+.|++|..++|..++-+.-
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~ 92 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS 92 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH
Confidence 357999999966555556788999998887644 6999999999999999999999999999999999999988775543
Q ss_pred HHHHHHHHhcc---CCC--------hhHHHHHHHHHHHH
Q 005810 82 VLHEMVKIARK---KPD--------THVKEKILILIDTW 109 (676)
Q Consensus 82 FLneLvKLvk~---k~d--------~~VkeKILeLIq~W 109 (676)
. ++|.+.. .++ ..||+++.+++...
T Consensus 93 --~-~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 93 --V-AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp --H-HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred --H-HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 2 2343321 122 37898888888654
No 16
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=98.01 E-value=3.7e-05 Score=72.53 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=74.9
Q ss_pred cCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCCh
Q 005810 17 PDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT 96 (676)
Q Consensus 17 pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~ 96 (676)
..-..|-.+-.++......+++.+.+|.++|+.-++..-+.+|-|+|..|+|||..|+..++. .+.+.+..... ..|.
T Consensus 22 nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~-~l~~~f~~~~~-~~d~ 99 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSR-NLFNLYKRTYL-LVDN 99 (144)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHT-THHHHHHHHHH-TSCH
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHH-hCCH
Confidence 344445555555444556799999999999999999999999999999999999999876655 23333333332 3689
Q ss_pred hHHHHHHHHHHHHHHHhCC
Q 005810 97 HVKEKILILIDTWQEAFGG 115 (676)
Q Consensus 97 ~VkeKILeLIq~Wa~aF~~ 115 (676)
.+|.|+.+|+..|.+.|.+
T Consensus 100 ~~r~k~~rL~~~W~~~~~~ 118 (144)
T 1sz9_A 100 TTRTKLINMFKLWLNPNDT 118 (144)
T ss_dssp HHHHHHHHHHHHHTSGGGC
T ss_pred HHHHHHHHHHHHHhCcccC
Confidence 9999999999999988654
No 17
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.75 E-value=0.00027 Score=69.02 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=83.1
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHHHhcccchhhhhhc
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-G--SRNSKVQLLALTLLETIIKNCGDIVHMHVA 78 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRL-k--s~np~vqllALtLLE~cVKNCG~~Fh~eVa 78 (676)
++.+|.+||+...-+|.-..+-|||+.-... ..-.+.+..|.||| + .++-+..+-||+|||.|++|+.++|-..+
T Consensus 35 ~E~kVreATnnd~wGPs~~~m~eIa~~T~~~-~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~- 112 (176)
T 1xgw_A 35 IESKVREATNDDPWGPSGQLMGEIAKATFMY-EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSA- 112 (176)
T ss_dssp HHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT-TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH-
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHH-
Confidence 3578999999988888888899999886664 56799999999996 4 47999999999999999999998887766
Q ss_pred chHHHHHHHHHhc------cCCC--hhHHHHHHHHHHHHHH
Q 005810 79 EKNVLHEMVKIAR------KKPD--THVKEKILILIDTWQE 111 (676)
Q Consensus 79 sk~FLneLvKLvk------~k~d--~~VkeKILeLIq~Wa~ 111 (676)
++.+..|..|-. +..| ..||+|+.+++....+
T Consensus 113 -r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D 152 (176)
T 1xgw_A 113 -REHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQD 152 (176)
T ss_dssp -HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred -HHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCC
Confidence 444544444321 1123 4799999999887653
No 18
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.61 E-value=0.00029 Score=66.97 Aligned_cols=108 Identities=24% Similarity=0.281 Sum_probs=82.4
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhcccchhhhhhcc
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS--RNSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks--~np~vqllALtLLE~cVKNCG~~Fh~eVas 79 (676)
++..|..||+...-+|.-..+-+||+.-... ....+.++.|.|||.. ++-+..+-||.|||.|++|+.++|-..+.+
T Consensus 24 ~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 102 (148)
T 1inz_A 24 AEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKE 102 (148)
T ss_dssp HHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS-HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4678999999988888888899999987663 5678999999999986 488999999999999999999888776644
Q ss_pred hHH-HHHHHHH--hc-cCCC--hhHHHHHHHHHHHHH
Q 005810 80 KNV-LHEMVKI--AR-KKPD--THVKEKILILIDTWQ 110 (676)
Q Consensus 80 k~F-LneLvKL--vk-~k~d--~~VkeKILeLIq~Wa 110 (676)
.-+ +..|... +. ...| ..||+|+.+++....
T Consensus 103 ~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 103 NMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp THHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhC
Confidence 322 2233331 11 1222 489999998887654
No 19
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.43 E-value=0.00038 Score=65.81 Aligned_cols=106 Identities=25% Similarity=0.293 Sum_probs=81.0
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcccchhhhhhcc
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSR--NSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~--np~vqllALtLLE~cVKNCG~~Fh~eVas 79 (676)
++..|..||+...-+|.-..+-+||+.-.. .....+.++.|.|||... +-++.+-||.|||.|++|+.++|-..+.+
T Consensus 6 ~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~ 84 (144)
T 1eyh_A 6 AEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKE 84 (144)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467899999998888888889999987664 356789999999999874 78899999999999999998887665533
Q ss_pred hHHHHHHHHHhcc-------CCC--hhHHHHHHHHHHHHHH
Q 005810 80 KNVLHEMVKIARK-------KPD--THVKEKILILIDTWQE 111 (676)
Q Consensus 80 k~FLneLvKLvk~-------k~d--~~VkeKILeLIq~Wa~ 111 (676)
. +..|.. ++. ..| ..||+|+.+++....+
T Consensus 85 ~--~~~i~~-L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 85 N--MYAVQT-LKDFQYVDRDGKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp T--HHHHHG-GGGCCCBCTTSCBCHHHHHHHHHHHHHHHHC
T ss_pred h--hHHHhh-hccceeeCCCccchHHHHHHHHHHHHHHHCC
Confidence 2 222222 221 122 3799999999988764
No 20
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.27 E-value=0.00079 Score=64.12 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=80.0
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhcccchhhhhhc
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS---RNSKVQLLALTLLETIIKNCGDIVHMHVA 78 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks---~np~vqllALtLLE~cVKNCG~~Fh~eVa 78 (676)
++..|..||+...-+|.-..+-||++.--. ...-.+.+..|.|||.. ++-+..+-||+|||.|++|+.++|-..+.
T Consensus 12 ~E~kVreAT~nd~wGp~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~~r 90 (150)
T 3onk_A 12 MEGKVREATNNEPWGASSTLMDQISQGTYN-FREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDDTR 90 (150)
T ss_dssp HHHHHHHHTSSCSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 467899999987777777788888876553 24568999999999964 48999999999999999999988877764
Q ss_pred chHHHHHHHHHhc------cCCC--hhHHHHHHHHHHHHHH
Q 005810 79 EKNVLHEMVKIAR------KKPD--THVKEKILILIDTWQE 111 (676)
Q Consensus 79 sk~FLneLvKLvk------~k~d--~~VkeKILeLIq~Wa~ 111 (676)
+.. ..|..|-. +..| ..||+|+.+++....+
T Consensus 91 ~~~--~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 91 NSI--NLIRILETFHYIDSQGRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp TTH--HHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred HHH--HHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcC
Confidence 432 22333221 1122 3899999999987754
No 21
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0014 Score=57.25 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhcCCCC-c-cccchHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHhhhhHHHHHHHHHHHhhhcC
Q 005810 193 RGIMDVLAEMLNALDPNN-K-EGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASG 269 (676)
Q Consensus 193 r~n~kLLnEML~~~~P~~-~-e~~dnElIqEL~~qCRsmq~rI~rLIq~t~DEelL~eLL~lNDeLn~vL~rYE~l~~g 269 (676)
..+++.|-++|...+|.. . +..+++-|++||.+|-.+|++|.++|....... ++|+.+|+.|.++..-|+++...
T Consensus 9 ~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk--~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 9 KTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEK--EDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888876632 2 567889999999999999999999998774333 27899999999999999998654
No 22
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=96.66 E-value=0.0043 Score=56.80 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhH
Q 005810 19 WAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHV 98 (676)
Q Consensus 19 W~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~V 98 (676)
-..|-.+...+-.....+++.+.+|.++|+.-.+..-+..|-|++.+++||+.+....+. +.|-..|..++..-.++.+
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~-~~f~~~l~~~~~~~~~~~~ 99 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR-ESFADVLPEAAALVKDPSV 99 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH-HHHHTTHHHHHHTTCSTTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH-HHHHHHHHHHHHHhCCHHH
Confidence 344555555554555679999999999999888999999999999999999876554332 2444445555544456789
Q ss_pred HHHHHHHHHHHHHH
Q 005810 99 KEKILILIDTWQEA 112 (676)
Q Consensus 99 keKILeLIq~Wa~a 112 (676)
|+|+..+|..|.+.
T Consensus 100 ~~kl~~ll~iW~~r 113 (132)
T 4flb_A 100 SKSVERIFKIWEDR 113 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999985
No 23
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.023 Score=49.94 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHhhhhHHHHHHHHHHHhh
Q 005810 187 TEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESF 266 (676)
Q Consensus 187 sELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t~DEelL~eLL~lNDeLn~vL~rYE~l 266 (676)
.|.+.+.--..+++.|-.. ......+++-+++||++|-.+|+||.+.|..+.. -..+|+++||.|..|..-||++
T Consensus 6 ~e~d~I~lF~~lv~~~k~~---~~~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~--K~~~L~~mn~Kls~a~rlYD~l 80 (91)
T 2pjw_V 6 EEKDSIYMFASLVEKMKSR---PLNEILEDSKLQNLAQRVFASKARLNYALNDKAQ--KYNTLIEMNGKISEIMNIYDRL 80 (91)
T ss_dssp HHHHHHHHHHHHHHHHHTC---SCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC---CcccccCCHHHHHHHHHHHhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333 2344567889999999999999999999987632 1247899999999999999998
Q ss_pred hcC
Q 005810 267 ASG 269 (676)
Q Consensus 267 ~~g 269 (676)
...
T Consensus 81 LE~ 83 (91)
T 2pjw_V 81 LEQ 83 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 24
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=96.09 E-value=0.012 Score=55.41 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhh---hhcchHHHHHHHHHhcc--CCC
Q 005810 21 MNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHM---HVAEKNVLHEMVKIARK--KPD 95 (676)
Q Consensus 21 lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~---eVask~FLneLvKLvk~--k~d 95 (676)
.|-.|..++-.....++..+..|.++|+.-.+..-|-+|-|+|.+++|++..... .++ ..|...|.+++.. +.+
T Consensus 25 ~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~-~~F~~~L~~~f~~~~~~~ 103 (145)
T 3d9j_A 25 KMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA-PRFSNNIISTFQNLYRCP 103 (145)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHH-HHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHH-HHHHHHHHHHHHHHHhCC
Confidence 3444444433444568999999999999888889999999999999999986532 222 3566666665532 345
Q ss_pred hhHHHHHHHHHHHHHHH
Q 005810 96 THVKEKILILIDTWQEA 112 (676)
Q Consensus 96 ~~VkeKILeLIq~Wa~a 112 (676)
..+|.||..|+..|.+.
T Consensus 104 ~~~r~kl~rLl~iW~~r 120 (145)
T 3d9j_A 104 GDDKSKIVRVLNLWQKN 120 (145)
T ss_dssp GGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 89999999999999863
No 25
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=95.22 E-value=0.011 Score=54.06 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc---chhhhhhcchHHHHHHHHHhccCCCh
Q 005810 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG---DIVHMHVAEKNVLHEMVKIARKKPDT 96 (676)
Q Consensus 20 ~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG---~~Fh~eVask~FLneLvKLvk~k~d~ 96 (676)
..|-.+...+-.....+++.+.+|.++|+...+..-+..|-|++.++.||. ..|...+.. .|-++...+-...+.
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~--~l~~~~~~~~~~~~~ 98 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFES--VLVDAFSHVAREADE 98 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHT--THHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHcCCH
Confidence 345555555445556799999999999987777778999999999999993 334433321 122222222122356
Q ss_pred hHHHHHHHHHHHHHHH
Q 005810 97 HVKEKILILIDTWQEA 112 (676)
Q Consensus 97 ~VkeKILeLIq~Wa~a 112 (676)
.+|+||..+|..|.+.
T Consensus 99 ~~k~kl~kll~iW~~r 114 (135)
T 4fu3_A 99 GCKKPLERLLNIWQER 114 (135)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7899999999999984
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.81 E-value=0.23 Score=48.39 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=75.8
Q ss_pred CcCHH----HHHHHHHHHhCCC----CcHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHH
Q 005810 16 GPDWA----MNIEICDMLNHDP----GQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEM 86 (676)
Q Consensus 16 ~pDW~----lilEICD~Ins~~----~~aKeAaRaIrKRL-ks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneL 86 (676)
+.||. .+..|+.+|+..+ ..-.+.+++|+++| +..|.++...|+..|..|.+..|..|+..+ ..|+..|
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHH
Confidence 35886 6777888887621 23468899999999 599999999999999999999998887644 4678888
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 87 VKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 87 vKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
.+.++.+ ...||+.+.+.|..+...
T Consensus 104 l~~l~d~-~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 104 LEKFKEK-KPNVVTALREAIDAIYAS 128 (242)
T ss_dssp HHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHHHc
Confidence 8877764 579999999999999764
No 27
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=94.05 E-value=0.17 Score=52.63 Aligned_cols=74 Identities=15% Similarity=0.071 Sum_probs=65.0
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhh
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHM 75 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~ 75 (676)
++..|.|||+.....|+-..+-+|............+++++|.+|++.+|..|++-||.|+.-|+.-+.+.|-.
T Consensus 24 l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~~~~~ 97 (299)
T 1hx8_A 24 LAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQ 97 (299)
T ss_dssp HHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45789999999988899999999988888877778999999999999999999999999999999987654433
No 28
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=93.70 E-value=0.21 Score=51.52 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=63.3
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~F 73 (676)
++..|-|||+.....|+-..+-+|.-..........+.+++|.+||..+|..+++-||.++..|+..+.+.|
T Consensus 29 l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~~~ 100 (271)
T 3zyl_A 29 VSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERF 100 (271)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCHHH
Confidence 467899999998888998888888888877777789999999999999999999999999999999865433
No 29
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=93.64 E-value=0.34 Score=45.07 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHh---ccCCC
Q 005810 21 MNIEICDMLNHDPGQAKDVVKGIKKRIGSR--NSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIA---RKKPD 95 (676)
Q Consensus 21 lilEICD~Ins~~~~aKeAaRaIrKRLks~--np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLv---k~k~d 95 (676)
.|-.+..-|-.....+++.+..+.++|... ++...+.-|-|++-++.||-.+...++. +.|-.-|..++ -...+
T Consensus 21 sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~-~~F~~~L~~~~~~~~~~~~ 99 (142)
T 2km4_A 21 SISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQ-DSFGKVAAEVLGRINQEFP 99 (142)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHH-HHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHH-HHHHHHHHHHHHHHHHcCC
Confidence 344455544455567999999999999876 7888899999999999999543322221 12222233322 22358
Q ss_pred hhHHHHHHHHHHHHHHH
Q 005810 96 THVKEKILILIDTWQEA 112 (676)
Q Consensus 96 ~~VkeKILeLIq~Wa~a 112 (676)
..++.||..+|..|.+.
T Consensus 100 ~~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 100 RDLKKKLSRVVNILKER 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 89999999999999886
No 30
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=93.32 E-value=0.25 Score=51.85 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=63.1
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~F 73 (676)
++..|-|||+.....|+-..+-+|............+.+++|.+||..+|..+.+-||.++..|+..+.+.|
T Consensus 29 l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~~~ 100 (310)
T 3zym_A 29 VSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERF 100 (310)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCHHH
Confidence 467899999999888999999888887777766789999999999999999999999999999999865443
No 31
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.02 E-value=0.62 Score=46.59 Aligned_cols=94 Identities=13% Similarity=0.243 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc---hhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD---IVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~---~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
..+.+..|..-|+++|+.+...||..|..|+++++. .|...+ .+.++..|.+++.. ++..||+...+.|-.-...
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVND-TQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 457777888888999999999999999999999984 454433 34678888887755 5789999999999999999
Q ss_pred hCCCCCChhHHHHHHHHHHHh
Q 005810 113 FGGPRARYPQYYAAYQELLRA 133 (676)
Q Consensus 113 F~~~~~~~p~~~~~Y~~Lk~k 133 (676)
++.. .+..|....+..|++
T Consensus 222 vG~~--~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 222 FGMN--TFVKTLEHLDNLKRK 240 (249)
T ss_dssp HCSG--GGHHHHHHSCHHHHH
T ss_pred hCHH--HHHHHHHHHhHHHHH
Confidence 9853 355555555555544
No 32
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=92.64 E-value=0.24 Score=50.72 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCC
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGG 115 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~ 115 (676)
.++++..|.+-|..+++.++++||.+||-++|-......+.+ -++++++++++++. .+.+|.=|.++.|...=+...-
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCB
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCC
Confidence 356788899999999999999999999999999866676665 45999999999865 4788988888888887665543
Q ss_pred CCCChhHHHHHHHHH
Q 005810 116 PRARYPQYYAAYQEL 130 (676)
Q Consensus 116 ~~~~~p~~~~~Y~~L 130 (676)
++..|.++.++...+
T Consensus 109 ~~~~y~Kl~~aL~dl 123 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSL 123 (265)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 333344455555444
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.59 E-value=0.97 Score=45.14 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=73.8
Q ss_pred CCcCHH----HHHHHHH-HHhCCC------CcHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhccc-chhhhhhcchH
Q 005810 15 IGPDWA----MNIEICD-MLNHDP------GQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCG-DIVHMHVAEKN 81 (676)
Q Consensus 15 ~~pDW~----lilEICD-~Ins~~------~~aKeAaRaIrKRL-ks~np~vqllALtLLE~cVKNCG-~~Fh~eVask~ 81 (676)
.+.+|. ...+|.. +++..+ ..-.+.+++|++.| +..|..++..|+..|..+.+..+ ..|...+. ..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~-~~ 104 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV-SL 104 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-HH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH-HH
Confidence 345887 5666777 765422 12267899999999 79999999999999999998887 77762221 24
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 82 FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
+|..|...++.+. ..|++.+...+..|.+...
T Consensus 105 llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 105 VFTPLLDRTKEKK-PSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcc
Confidence 6666766666644 7899999999999999863
No 34
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=89.87 E-value=0.54 Score=47.05 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHH----HHHhccCCChhHHHHHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEM----VKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneL----vKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
...++..|..-++++||++..-+|..|..|+++.|... +.-+.++..+ .+++. ..+..||+-.+++|.+-..
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~---~~~k~~l~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN---VNVQTFLPELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT---CCHHHHHHHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc---CCchhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999987432 2334555544 44443 4689999999988876655
Q ss_pred HhC
Q 005810 112 AFG 114 (676)
Q Consensus 112 aF~ 114 (676)
.++
T Consensus 213 ~~G 215 (278)
T 4ffb_C 213 VTG 215 (278)
T ss_dssp C--
T ss_pred HhC
Confidence 443
No 35
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=88.49 E-value=1.4 Score=41.61 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=75.1
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhh
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAK-----DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMH 76 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aK-----eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~e 76 (676)
|..+|+...++. .+.-......|+.+....++..+ .++..|.+.|++.++.++..|+..|..|..++ ......
T Consensus 4 i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHH
Confidence 345566655542 11112233334444444432222 47888999999999999999999999998875 467777
Q ss_pred hcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 77 VAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 77 Vask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
+.+...+..|+++++. .+..|++.++..|.....
T Consensus 82 ~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTS-TDSEVQKEAARALANIAS 115 (252)
T ss_dssp HHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 8888899999999885 568999999988887753
No 36
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=87.27 E-value=1.4 Score=42.09 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhh----------hcc-hHHHHHH
Q 005810 18 DWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMH----------VAE-KNVLHEM 86 (676)
Q Consensus 18 DW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~e----------Vas-k~FLneL 86 (676)
.-..|..|..++-..-...+-.+..|.+.++.-.+.-=+=+|-|+|..|+||-+.|... ++. -.++.++
T Consensus 21 S~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~ 100 (157)
T 3clj_A 21 SGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEV 100 (157)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHH
Confidence 34455556665554445567788889999998778888999999999999986555221 110 0112333
Q ss_pred HH-Hhc---cCCChhHHHHHHHHHHHHHHH
Q 005810 87 VK-IAR---KKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 87 vK-Lvk---~k~d~~VkeKILeLIq~Wa~a 112 (676)
+. ++. ...+...|+||.+||..|...
T Consensus 101 i~~l~~~~~~~~~~~~k~Ki~klldiW~k~ 130 (157)
T 3clj_A 101 IQELLSDAIAKSNQDHKEKIRMLLDIWDRS 130 (157)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Confidence 22 222 235789999999999999876
No 37
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=86.79 E-value=2.1 Score=42.69 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=61.3
Q ss_pred CCCcCHHH----HHHHHHHHhCCCCc-H--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhc--
Q 005810 14 LIGPDWAM----NIEICDMLNHDPGQ-A--------KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVA-- 78 (676)
Q Consensus 14 l~~pDW~l----ilEICD~Ins~~~~-a--------KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVa-- 78 (676)
+..-+|.. +.++..+++..+.. . .+..+.|+|+|+..|..++..||.+|..+++.+|..+...-.
T Consensus 18 l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~ 97 (278)
T 4ffb_C 18 LTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNI 97 (278)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhH
Confidence 34447764 44455555543321 1 234568999999999999999999999999998865422111
Q ss_pred --chHHHHHHH-HHhccCCChhHHHHHHHHHHHHHHH
Q 005810 79 --EKNVLHEMV-KIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 79 --sk~FLneLv-KLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
-..++..|+ |++.+ ....+|+++++.+..|.+.
T Consensus 98 ~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 98 TLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp HHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHh
Confidence 123444443 22322 3468999999999998764
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=86.19 E-value=6.7 Score=37.81 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=61.2
Q ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccch--hhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 35 QAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI--VHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 35 ~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~--Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
...+.+..|.+.|+++++.+...+|.+|..|+.+++.. |...+ ..++..|.+++.. ...+||+.+.+.|..-...
T Consensus 130 ~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Confidence 35677888889999999999999999999999998643 33333 3677777777755 4679999999999887777
Q ss_pred hC
Q 005810 113 FG 114 (676)
Q Consensus 113 F~ 114 (676)
++
T Consensus 207 vg 208 (242)
T 2qk2_A 207 MG 208 (242)
T ss_dssp HC
T ss_pred cC
Confidence 65
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=84.70 E-value=5.6 Score=36.81 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=58.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
++..|.+.|++.++.++..|+..|..|..+. ......+.+..++..|++++.. .+..|+++++..|....
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence 6788888999999999999999999998865 4556677777899999999885 57899999999887653
No 40
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=83.22 E-value=2.6 Score=43.39 Aligned_cols=88 Identities=10% Similarity=0.153 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCCcH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCC
Q 005810 21 MNIEICDMLNHDPGQA-----KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPD 95 (676)
Q Consensus 21 lilEICD~Ins~~~~a-----KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d 95 (676)
.+-.|+.+++..+... ..++..|.+-|++.+..++..|..+|..+..+ .......|.+..++..|+++++.. +
T Consensus 145 A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~-d 222 (296)
T 1xqr_A 145 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTE-H 222 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSC-C
T ss_pred HHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCC-C
Confidence 3445566665544322 23666788888999999999999999999887 355666777889999999998864 7
Q ss_pred hhHHHHHHHHHHHHH
Q 005810 96 THVKEKILILIDTWQ 110 (676)
Q Consensus 96 ~~VkeKILeLIq~Wa 110 (676)
..|++.++..|..-.
T Consensus 223 ~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 223 SPFHEHVLGALCSLV 237 (296)
T ss_dssp STHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 799999999887665
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=81.13 E-value=8.3 Score=36.18 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
++..|.+-|.+.++.++..|+..|..+.... ......+.+..++..|+++++. .+..|++.++..|..-.....
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTS-TDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCC-CcHHHHHHHHHHHHHHHcCCC
Confidence 7788999999999999999999999988754 4455567778899999999876 467999999999988877544
No 42
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=78.86 E-value=60 Score=34.52 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=98.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCC
Q 005810 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPR 117 (676)
Q Consensus 38 eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~ 117 (676)
+-+..|.+-+.....+.|-++|+.|-.||..- .-+...|...+|+..|..++.+ .+..|.+..|+++...-+.-.
T Consensus 160 ~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se--- 234 (339)
T 3dad_A 160 EGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSE--- 234 (339)
T ss_dssp THHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCG---
T ss_pred ccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCc---
Confidence 34455666666779999999999999999873 2344456688999999999985 678999999999988877532
Q ss_pred CChhHHHHHHHHHHH-hccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHhhhccCCCCCCCHHHHHHHHHHH
Q 005810 118 ARYPQYYAAYQELLR-AGAVFPQRSERSAPVFTPPQTHPLTSYPQNFRNPEHQQEAAEASAESEFPTLSLTEIQNARGIM 196 (676)
Q Consensus 118 ~~~p~~~~~Y~~Lk~-kGi~FP~~~e~~~piftPp~t~p~S~~P~~lr~a~~~q~~ae~s~~~E~~~~slsELe~Ar~n~ 196 (676)
+.++.+.++.....+ .|.. .+ .+ .-.. ..++- -.+.+...+.+
T Consensus 235 ~~~~lv~~av~~v~~~~~~~----------p~-----------------~~-Lv~~-----L~~~~---~~D~elq~~am 278 (339)
T 3dad_A 235 NNAPLFIRAVNSVASTTGAP----------PW-----------------AN-LVSI-----LEEKN---GADPELLVYTV 278 (339)
T ss_dssp GGHHHHHHHHHHHHHHHCCC----------TT-----------------HH-HHHH-----HTTTT---SCCHHHHHHHH
T ss_pred ccchHHHHHHHHhhhccCCC----------cH-----------------HH-HHHH-----HhccC---CCCHHHHHHHH
Confidence 235555444443211 1111 00 00 0000 01111 12445555789
Q ss_pred HHHHHHHhhcCCCCccccchHHHHHHHHHH--HHHHHHHHHHhhcC-CChHHHH
Q 005810 197 DVLAEMLNALDPNNKEGLRQEVIVDLVDQC--RTYKQRVVHLVNST-ADESLLC 247 (676)
Q Consensus 197 kLLnEML~~~~P~~~e~~dnElIqEL~~qC--Rsmq~rI~rLIq~t-~DEelL~ 247 (676)
.|+|.+|.... + .+.-.++.+.. +.++..|++++... .|-|+..
T Consensus 279 tLIN~lL~~ap-d------~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 279 TLINKTLAALP-D------QDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHCS-S------HHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHhcCC-C------hhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 99999999862 1 12223344322 35677788877765 5655544
No 43
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=78.29 E-value=6 Score=40.81 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 38 eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
.++..|.+.|++.++.++..|+..|..+..++ ..+...+.....+..|+++++...+..|++.++..|....
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDS-TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 46777888888999999999999999998876 3455556667888999999886567899998888777665
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=76.73 E-value=14 Score=37.90 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-chhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG-~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
-...+..|...|++.+.++..-||..|..+...|. ..+...+ ..++..|+++++. .+..||..++..|....+.+.
T Consensus 364 ~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcc
Confidence 34677778888999999999999999999999887 3344433 4678888888876 468999999999999999886
Q ss_pred CCCCChhHHHHHHHHH
Q 005810 115 GPRARYPQYYAAYQEL 130 (676)
Q Consensus 115 ~~~~~~p~~~~~Y~~L 130 (676)
..-...+.+...+..|
T Consensus 441 ~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 441 EAAINDVYLAPLLQCL 456 (462)
T ss_dssp GGCCSTTTHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 4210113344555544
No 45
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=76.11 E-value=11 Score=34.87 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=56.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
++..|.+-|++.++.++..|+..|..+..++.. ....+.+..++..|+++++. .+..|++.++..|....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 166 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999876543 33345577899999999886 37899999988887665
No 46
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=74.46 E-value=12 Score=39.79 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=63.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH---------HHHHHHHHhcc--CCChhHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN---------VLHEMVKIARK--KPDTHVKEKILILID 107 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~---------FLneLvKLvk~--k~d~~VkeKILeLIq 107 (676)
.++-|..-+.+....|...||.||+.+|.++...|...+..-. .+..|++++.. ..|.+++-..+.||.
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 4444444555678999999999999999999655554322212 36677888863 468899999999998
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHHhccC
Q 005810 108 TWQEAFGGPRARYPQYYAAYQELLRAGAV 136 (676)
Q Consensus 108 ~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi~ 136 (676)
.-=....+ -..+++.-..|..+|+.
T Consensus 283 ~lL~~apd----~d~~~di~d~Le~~gi~ 307 (339)
T 3dad_A 283 KTLAALPD----QDSFYDVTDALEQQGME 307 (339)
T ss_dssp HHHHHCSS----HHHHHHHHHHHHHTTHH
T ss_pred HHHhcCCC----hhHHHHHHHHHHHccHH
Confidence 66554332 23366666667777654
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=74.21 E-value=8 Score=36.76 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
++..|.+-|++.++.++..|+..|-.+..+...+. ..+.+...+..|+++++. .+..|++.++..|....
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQI-QAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHH-HHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 67788888899999999999999999987764332 456677899999999976 47899999888887664
No 48
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=73.20 E-value=11 Score=40.56 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=59.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
++..|.+-|++.++.++..|+..|-.+...+ ..+...+.....+..|++++....+..|+..++..|......
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDS-PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 6777888889999999999999999888765 356666767788899999987667788998888888776543
No 49
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=71.61 E-value=21 Score=36.65 Aligned_cols=96 Identities=9% Similarity=0.140 Sum_probs=63.7
Q ss_pred cCHHHHHHHHHHHhCCC-CcHHHHHH-------HHHHHhCCCCHHHHHHHHHHHHHHHhccc---chhhhhhcchHHHHH
Q 005810 17 PDWAMNIEICDMLNHDP-GQAKDVVK-------GIKKRIGSRNSKVQLLALTLLETIIKNCG---DIVHMHVAEKNVLHE 85 (676)
Q Consensus 17 pDW~lilEICD~Ins~~-~~aKeAaR-------aIrKRLks~np~vqllALtLLE~cVKNCG---~~Fh~eVask~FLne 85 (676)
.||...++-+|.+...- ...++++. -+.-|+...|+++.+.+|.+|..++.-.+ ++|+..-+ ..|+--
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~ 136 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPY 136 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHH
Confidence 48887776666655422 23444333 33558889999999999999999987654 34543322 356766
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 86 MVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 86 LvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
|+..+-. ....||+++.++|..-...+.
T Consensus 137 LveKlGd-~k~~vR~~~r~il~~l~~v~~ 164 (266)
T 2of3_A 137 LLLKTGE-AKDNMRTSVRDIVNVLSDVVG 164 (266)
T ss_dssp HHHGGGC-SSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC-ChHHHHHHHHHHHHHHHHHCC
Confidence 6554433 236899999999988776553
No 50
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=71.50 E-value=21 Score=30.33 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHhhhhHHHHHHHHHHHhhhc
Q 005810 195 IMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFAS 268 (676)
Q Consensus 195 n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t~DEelL~eLL~lNDeLn~vL~rYE~l~~ 268 (676)
.++.+-.+|...+|........|+ .+|-..|.+|-+-|=.-++.++- -=.+|=++|..|..+|..|..+.+
T Consensus 6 kmd~~L~~l~~aDP~~~~~D~~el-~~LE~~c~~MgplId~kLE~iDr--kh~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 6 KMDQLLQMLQSTDPSDDQPDLPEL-LHLEAMCHQMGPLIDEKLEDIDR--KHSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHHHHTCCTTSCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566778889988765545454 56999999998888555555432 224577899999999999998754
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=71.29 E-value=8.9 Score=36.42 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
++..|.+-|++.++.++..|+..|..|.... ..+...+.+...+..|+++++. .+..|++.++..|..-.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 124 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Confidence 4455666778889999999999999998754 3566777777899999999987 46899999888887663
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=70.13 E-value=7.6 Score=39.92 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=59.7
Q ss_pred HHHHHHH-HhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 39 VVKGIKK-RIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 39 AaRaIrK-RLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
++..|.+ -|++.++.++..|+.+|-.++.|. ..++..|.+...+..|+++++..++..||++++..|-...
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~ 153 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 5666777 788999999999999999999986 4677778888899999999987667899999888877654
No 53
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.44 E-value=28 Score=31.95 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=47.5
Q ss_pred cCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCCh
Q 005810 17 PDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT 96 (676)
Q Consensus 17 pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~ 96 (676)
+||..-...+..+..-. ..+++..|.+.|++.++.+...|+..|..+ ++.+.+..|++++.. .+.
T Consensus 26 ~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d-~~~ 90 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-EDG 90 (201)
T ss_dssp SCHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SSH
T ss_pred CCHHHHHHHHHHHHhcC--ChhHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-CCH
Confidence 46665555555443321 135677777788888888877777666443 233556666666654 456
Q ss_pred hHHHHHHHHHHHH
Q 005810 97 HVKEKILILIDTW 109 (676)
Q Consensus 97 ~VkeKILeLIq~W 109 (676)
.||..++..|...
T Consensus 91 ~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 91 WVRQSAAVALGQI 103 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777666554
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=67.61 E-value=14 Score=34.32 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=51.4
Q ss_pred CCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCC
Q 005810 15 IGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP 94 (676)
Q Consensus 15 ~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~ 94 (676)
..+|+..-...|..+..-. ..+++..|.+.|.+.++.+...|+..|..+ ...+.+..|.+++.. .
T Consensus 91 ~~~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d-~ 155 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIG--DERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKD-E 155 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-S
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHcC-C
Confidence 3456666555565554322 245778888888888888888888877554 223456666666643 4
Q ss_pred ChhHHHHHHHHHHHH
Q 005810 95 DTHVKEKILILIDTW 109 (676)
Q Consensus 95 d~~VkeKILeLIq~W 109 (676)
+..||..+++.|..+
T Consensus 156 ~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 156 DGWVRQSAADALGEI 170 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 567777766666554
No 55
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=67.40 E-value=14 Score=32.73 Aligned_cols=71 Identities=10% Similarity=0.204 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHhhhhHHHHHHHH
Q 005810 189 IQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLA 261 (676)
Q Consensus 189 Le~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~rI~rLIq~t~DEelL~eLL~lNDeLn~vL~ 261 (676)
++..+..+.+|.+=+....-.+.....+..++.||.+.-.|.++++++|+..+|...- .=.+.|.|..+=+
T Consensus 6 ~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~--yE~LQDkL~qi~e 76 (98)
T 3f1i_H 6 LKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLY--YEGLQDKLAQIRD 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 5677888888877554443345666778899999999999999999999876544322 2234455555433
No 56
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=67.40 E-value=17 Score=37.22 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHH---HHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVL---HEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FL---neLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
+.-....|..-++|+|.++-.-+|.+|..++...|..+ .+.+ ..+.+++.. .|..||+-++..|.+-...
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------LKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------GGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------cccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHHH
Confidence 44455566667789999999999999999999999873 2345 777777776 6889999999988866655
Q ss_pred hC
Q 005810 113 FG 114 (676)
Q Consensus 113 F~ 114 (676)
.+
T Consensus 238 ~G 239 (266)
T 2of3_A 238 EG 239 (266)
T ss_dssp HT
T ss_pred hh
Confidence 54
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.93 E-value=30 Score=32.01 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=53.9
Q ss_pred CcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCC
Q 005810 16 GPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPD 95 (676)
Q Consensus 16 ~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d 95 (676)
.+||..-...+..+..-. ..+++..|.+.|++.++.+...|+..|..+ .+.+.+..|+++++. .+
T Consensus 30 ~~~~~vR~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~-~~ 94 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-ED 94 (211)
T ss_dssp CSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSCHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SS
T ss_pred CCCHHHHHHHHHHHHHhC--CccHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-CC
Confidence 357766666565554422 246788888888888888888888777443 234566777777654 46
Q ss_pred hhHHHHHHHHHHHHH
Q 005810 96 THVKEKILILIDTWQ 110 (676)
Q Consensus 96 ~~VkeKILeLIq~Wa 110 (676)
..||..++..|....
T Consensus 95 ~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 95 GWVRQSAAVALGQIG 109 (211)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 778887777776553
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=66.46 E-value=20 Score=36.79 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcc-cchhhhhhcchHHHHHHHHHhccCC-ChhHHHHHHHHHHHHH
Q 005810 35 QAKDVVKGIKKRIGSR--NSKVQLLALTLLETIIKNC-GDIVHMHVAEKNVLHEMVKIARKKP-DTHVKEKILILIDTWQ 110 (676)
Q Consensus 35 ~aKeAaRaIrKRLks~--np~vqllALtLLE~cVKNC-G~~Fh~eVask~FLneLvKLvk~k~-d~~VkeKILeLIq~Wa 110 (676)
.-.+.+..|...+.+. ++.+...||.+|..+++.+ ++.|...+ ..++..|.++++... +..||..++..+..|.
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 3457888888888888 9999999999999999987 44333222 356677777776543 6899999999888774
Q ss_pred H
Q 005810 111 E 111 (676)
Q Consensus 111 ~ 111 (676)
.
T Consensus 203 ~ 203 (462)
T 1ibr_B 203 E 203 (462)
T ss_dssp T
T ss_pred H
Confidence 3
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.76 E-value=25 Score=32.30 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCC
Q 005810 15 IGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP 94 (676)
Q Consensus 15 ~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~ 94 (676)
..+|+..-...|..+..-. ..+++..|.+.|++.++.+...|+..|..+ .+.+.+..|+++++. .
T Consensus 86 ~d~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d-~ 150 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQIG--DERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKD-E 150 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------TCGGGHHHHHHHTTC-S
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CCHHHHHHHHHHHcC-C
Confidence 3467766666666554322 245788888899999999999998888654 234667777777765 4
Q ss_pred ChhHHHHHHHHHHHHH
Q 005810 95 DTHVKEKILILIDTWQ 110 (676)
Q Consensus 95 d~~VkeKILeLIq~Wa 110 (676)
+..||..++..|..+.
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6788888887777663
No 60
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=65.30 E-value=23 Score=36.41 Aligned_cols=73 Identities=5% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 38 eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
.++..|.+.|++.++.++..|+..|-.|..++.......+.+...+..|+++++.. +..|++.++..|.....
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILR 390 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 35566777788889999999999998888765433334455667888899988764 78999999988877765
No 61
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=64.87 E-value=14 Score=38.76 Aligned_cols=71 Identities=8% Similarity=0.114 Sum_probs=57.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
|+..|.+.|++.++.++..|...|..|..+........|.+...+..|++++....+..+++.++..|...
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 47778888999999999999999999987644566777888888999999865555778988887776433
No 62
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=63.67 E-value=29 Score=30.17 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILI 106 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLI 106 (676)
++++..|.+.|++.++.|...|+..|..+ ++.+.+..|+++++. .+..||..++..|
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~------------~~~~a~~~L~~~l~d-~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQI------------GGERVRAAMEKLAET-GTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHH------------CSHHHHHHHHHHTTS-CCTHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CcHHHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 45566666666666666666666555432 244556666666643 4556766665543
No 63
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=63.56 E-value=21 Score=39.68 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=56.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
++..|.+.|++.++.++..|+..|..|..+.. .....|.+...+..|+++++.. +.+++..++..|..|..
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~-~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc-hhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHh
Confidence 56667778888999999999999998887753 3445566778999999999865 56788888888888874
No 64
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=62.36 E-value=19 Score=35.90 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=58.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
++..|.+.|++.++.+|..|...|..|...+ ......|.+...+..|+++++...+.+|++.+...|....
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 5777888999999999999999999998743 3566678888899999999986567899998887776554
No 65
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=61.04 E-value=17 Score=41.96 Aligned_cols=73 Identities=11% Similarity=0.128 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
+..++..|.+-|.+.++.++..|+..|-.|.++.. .-+..+....++..|+++++...+..||..++..|...
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L 220 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 35678888888899999999999999999988754 23334446689999999988666788888888777664
No 66
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=60.45 E-value=35 Score=34.28 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcc---hHHHHHHHHHhc-cCC
Q 005810 19 WAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAE---KNVLHEMVKIAR-KKP 94 (676)
Q Consensus 19 W~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVas---k~FLneLvKLvk-~k~ 94 (676)
.+.+.=||++.+..--..+.+...|++-|.+.+.. .+.+|=.|+++||..+...-+. ..+++.|.+++. .+.
T Consensus 147 lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~----~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~l 222 (260)
T 1hu3_A 147 IGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEE----SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKT 222 (260)
T ss_dssp HHHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHH----HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSS
T ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCC
Confidence 35666699999988777777777788778877765 4666666777789887653321 345555556554 346
Q ss_pred ChhHHHHHHHHHHHHHHHhC
Q 005810 95 DTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 95 d~~VkeKILeLIq~Wa~aF~ 114 (676)
+.+||-.|..+|+.-...+.
T Consensus 223 s~Rirfmi~~l~dLR~~~W~ 242 (260)
T 1hu3_A 223 SSRIRFMLQDVIDLRLCNWV 242 (260)
T ss_dssp CHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHcCCC
Confidence 77888888888876655444
No 67
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=59.94 E-value=29 Score=37.31 Aligned_cols=73 Identities=8% Similarity=0.044 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc--hhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD--IVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~--~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~a 112 (676)
++..|.+-|.+.++.++..|+..|..|...+.. .....+.....+..|+.++... +..|+..++..|..+...
T Consensus 384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENILKM 458 (530)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 445666777788999999999999999988764 4545555667888899988764 789999999888877654
No 68
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=59.77 E-value=17 Score=39.01 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
.+.+..|.+.|.+.++.+++.|+..|..++..........+.....+..|+++++...+..|+..++..|....
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~ 146 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 146 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 45688899999999999999999999888876653444556667889999998876544788877776665544
No 69
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=59.20 E-value=27 Score=39.02 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=38.3
Q ss_pred cCHHHHHHHHHHHhCCCCcH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh
Q 005810 17 PDWAMNIEICDMLNHDPGQA---KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (676)
Q Consensus 17 pDW~lilEICD~Ins~~~~a---KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~F 73 (676)
.+.+...|.+..|-.-...+ ..|+..|.+-|.++++++++.||..|..++......|
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~ 348 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV 348 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH
Confidence 34455566555443322222 2477888888999999999999999888887754433
No 70
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=58.51 E-value=40 Score=37.86 Aligned_cols=77 Identities=10% Similarity=0.184 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHhCC
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKK-PDTHVKEKILILIDTWQEAFGG 115 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k-~d~~VkeKILeLIq~Wa~aF~~ 115 (676)
...+..|.+.|++.++.+...|+.+|..+++.||..|...+ .+++..|.+.+... .+..||..++..|..-...++.
T Consensus 638 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 34566777788788888999999999999999998765433 45666666666543 4578999999999988888764
No 71
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=57.95 E-value=56 Score=36.77 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-chhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG-~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
-...+..|...|++.+.++...|+..|..+...|+ +.+...+ ..++..|.+.++. .+..||..++..|..|.+.+.
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCc
Confidence 34567778888889999999999999999999887 3343222 3456666666654 468999999999999999875
Q ss_pred C
Q 005810 115 G 115 (676)
Q Consensus 115 ~ 115 (676)
.
T Consensus 441 ~ 441 (876)
T 1qgr_A 441 E 441 (876)
T ss_dssp G
T ss_pred h
Confidence 3
No 72
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=57.23 E-value=26 Score=40.45 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
++..|.+.|++.++.++..|+..|-.|..+.. .....|.+...+..|+++++. .+.+|++.++..|..|..
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Confidence 55667777888899999999999999888753 345556667888999999986 567899999999999974
No 73
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=56.64 E-value=89 Score=35.68 Aligned_cols=72 Identities=19% Similarity=0.105 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 35 QAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 35 ~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
.-.+.+..|.+.|+..++.++..|+..|..++++|+..+...+ ..++..|.++++.. +.+.+..+++.|..-
T Consensus 439 ~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l 510 (852)
T 4fdd_A 439 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKY-QHKNLLILYDAIGTL 510 (852)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999998765433 56777777777543 233333334444333
No 74
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=56.14 E-value=26 Score=37.31 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
...+..|.+.++..++.+...++..|..+++.+|..|.. ..|+..|.+++.. .|..||+.+.+.+...
T Consensus 518 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~~~p~l~~l~~d-~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----SEVKPILEKLTQD-QDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----HHHHHHHHHHTTC-SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH----HHHHHHHHHHcCC-CchhHHHHHHHHHHHh
Confidence 456667778888899999999999999999998876642 4667677776543 5789999888887654
No 75
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=55.74 E-value=36 Score=35.88 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
++..|.+.|++.++.++..|+..|-.|..+.. .....|.+...+..|+++++. .+.+|+..+...|..|..
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHh
Confidence 56677778889999999999999988887653 234566677889999999986 467888888888888864
No 76
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=55.55 E-value=21 Score=31.62 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.7
Q ss_pred CChhHHHHHHHHHHHHHHHhCC
Q 005810 94 PDTHVKEKILILIDTWQEAFGG 115 (676)
Q Consensus 94 ~d~~VkeKILeLIq~Wa~aF~~ 115 (676)
.+.+|+..+..||..|...+..
T Consensus 67 ~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 67 SDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp CCSHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998764
No 77
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=55.25 E-value=33 Score=38.04 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
..++..|.+.|++.++.++..|+..|-.|.++.. .....+.....+..|+++++...+..|+..++..|...
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4467888888999999999999999999998764 33334445688999999988766788888888777654
No 78
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=54.35 E-value=1.3e+02 Score=33.60 Aligned_cols=89 Identities=10% Similarity=0.089 Sum_probs=62.6
Q ss_pred HHHHHHHhCC---CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc----hhhhhhcchHHHHHHHHHhccC-C
Q 005810 23 IEICDMLNHD---PGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD----IVHMHVAEKNVLHEMVKIARKK-P 94 (676)
Q Consensus 23 lEICD~Ins~---~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~----~Fh~eVask~FLneLvKLvk~k-~ 94 (676)
-++|+.+... ...-...+..|.+.|++. +.++..|...|..++++|++ .+...+ ..++..|.++++.. .
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~ 512 (861)
T 2bpt_A 436 GRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDN 512 (861)
T ss_dssp HHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCC
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCc
Confidence 3455555432 345678888888888876 99999999999999999973 232222 45667777777643 3
Q ss_pred ChhHHHHHHHHHHHHHHHhC
Q 005810 95 DTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 95 d~~VkeKILeLIq~Wa~aF~ 114 (676)
+..||..+++.|.......+
T Consensus 513 ~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 513 EFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHHHcc
Confidence 36899888888888877665
No 79
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=54.28 E-value=36 Score=35.82 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
...++..|.+.|++.++.++..|+..|..+..+.. .....+.....+..|+++++...+..|+..++..|...
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34578888899999999999999999999987653 22334445678899999887666788888888877764
No 80
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=53.62 E-value=85 Score=36.18 Aligned_cols=73 Identities=11% Similarity=0.192 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhc-chHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVA-EKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 38 eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVa-sk~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
+.+..|..-|+..+.++-++||.+|++|..|++.+++..|- ...=+..|+.+++.+ ...||...+.+|.....
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhc
Confidence 66778888899999999999999999999999988888776 446677888888764 47899999999888764
No 81
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=52.95 E-value=22 Score=38.20 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccch----------hhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI----------VHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDT 108 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~----------Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~ 108 (676)
++..|..-|.+.++.++..|+..|..++..|... +...|.+...++.|..|.. ..+..|+++++.+|..
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~-~~~~~v~~~a~~il~~ 507 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ-NENDKIYEKAYKIIET 507 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG-CSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 5666777778889999999999999999877532 3344555566777777654 4578899999998865
Q ss_pred H
Q 005810 109 W 109 (676)
Q Consensus 109 W 109 (676)
.
T Consensus 508 ~ 508 (530)
T 1wa5_B 508 Y 508 (530)
T ss_dssp H
T ss_pred H
Confidence 4
No 82
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=52.60 E-value=47 Score=35.50 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 38 eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
.++..|.+.|++.++.++..|...|..|.... ......|.+..-+..|++++++..+..|++.+...|..-..
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence 35677889999999999999999999988742 45666777778899999999865678999988877766553
No 83
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=52.46 E-value=59 Score=34.46 Aligned_cols=73 Identities=11% Similarity=0.174 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
...+..|.+.|++.+..+...|+..|..+++.+|..|+ -..++..|.+++.. .+..||..++..|......+.
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA----HATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH----HHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhcC
Confidence 35666777777777788888888888888887776654 23556666655442 456788888887777776654
No 84
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=51.38 E-value=29 Score=37.97 Aligned_cols=73 Identities=8% Similarity=0.112 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 38 eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
.|+..|.+.|++.++.++..|...|..|..+........|.+...+..|++++....+..|++.++..|....
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 3577888889999999999999999988775444566777777889999998665557889988887774443
No 85
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=50.61 E-value=39 Score=38.00 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG 70 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG 70 (676)
.+.|+..|.+-|.++++++++.||..|..++...+
T Consensus 327 ~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~ 361 (621)
T 2vgl_A 327 LVRACNQLGQFLQHRETNLRYLALESMCTLASSEF 361 (621)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence 45688888888889999999999999988887653
No 86
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=50.42 E-value=22 Score=40.33 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILI 106 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLI 106 (676)
++..|.+-|++.++.++..|...|..|...++......|.+..-+..|+++++...+..|++.+...|
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL 158 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTL 158 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55667788889999999999999999998655677888888889999999998655566666655443
No 87
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.57 E-value=55 Score=31.66 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
.+++..|.+.|++.++.+...|+..|.. +++.+.+..|.++++.. .||..+++.|..+
T Consensus 191 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~------------~~~~~~~~~L~~~l~d~---~vr~~a~~aL~~i 248 (280)
T 1oyz_A 191 SDIRDCFVEMLQDKNEEVRIEAIIGLSY------------RKDKRVLSVLCDELKKN---TVYDDIIEAAGEL 248 (280)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHH------------TTCGGGHHHHHHHHTSS---SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH------------hCCHhhHHHHHHHhcCc---cHHHHHHHHHHhc
Confidence 3455555555555555555555554432 22455666677666542 2666555555443
No 88
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=49.32 E-value=28 Score=37.68 Aligned_cols=70 Identities=14% Similarity=0.327 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-----chhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-----DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG-----~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
++..|.+-|.+.+++++..+|..|+.+++-+. ..|...|-+...++.|..|.. ..+.+|.+|++.+|..+
T Consensus 402 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~-~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR-HENESVYKASLNLIEKY 476 (510)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 34555566778899999999999888876432 234444555566666766644 35789999999999876
No 89
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=49.22 E-value=42 Score=37.12 Aligned_cols=87 Identities=9% Similarity=0.109 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCCCCcHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCCh
Q 005810 19 WAMNIEICDMLNHDPGQAK--DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT 96 (676)
Q Consensus 19 W~lilEICD~Ins~~~~aK--eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~ 96 (676)
..+++.+..+.+..++... +.+..|++.|.+.++.|+..|+.+|..+.++........+ ...++..|.+.+.. .++
T Consensus 139 k~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l-~~~~~~~Ll~~l~~-~~~ 216 (591)
T 2vgl_B 139 KTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL-NPQNINKLLTALNE-CTE 216 (591)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC-HHHHHHHHHHHHHH-CCH
T ss_pred HHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc-cHHHHHHHHHcCCC-CCc
Confidence 4456667777777777665 4778899999999999999999999888776543311111 12333333333322 344
Q ss_pred hHHHHHHHHHH
Q 005810 97 HVKEKILILID 107 (676)
Q Consensus 97 ~VkeKILeLIq 107 (676)
-++-++++++.
T Consensus 217 ~~q~~il~~l~ 227 (591)
T 2vgl_B 217 WGQIFILDCLS 227 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45555555543
No 90
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=48.39 E-value=1.5e+02 Score=33.28 Aligned_cols=96 Identities=10% Similarity=0.035 Sum_probs=67.4
Q ss_pred CcCHHHHHHHHHHHhCCCCc---------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh-hhhhcchHHHHH
Q 005810 16 GPDWAMNIEICDMLNHDPGQ---------AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV-HMHVAEKNVLHE 85 (676)
Q Consensus 16 ~pDW~lilEICD~Ins~~~~---------aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~F-h~eVask~FLne 85 (676)
+++|..-...|..+..=..+ -.+.+..|.+.|++.++.+...|+..|..+.+.++..+ +..+ -..++..
T Consensus 377 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~ 455 (876)
T 1qgr_A 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQC 455 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHH
Confidence 46777655555444321111 23567788888999999999999999999999987654 2222 2466677
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 005810 86 MVKIARKKPDTHVKEKILILIDTWQEAFG 114 (676)
Q Consensus 86 LvKLvk~k~d~~VkeKILeLIq~Wa~aF~ 114 (676)
|.+.+.. +..||+.++..|......+.
T Consensus 456 l~~~l~~--~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 456 LIEGLSA--EPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHTTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC--CHHHHHHHHHHHHHHHHHhh
Confidence 7777665 38899999999988888764
No 91
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=46.99 E-value=89 Score=35.69 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCC
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGG 115 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~ 115 (676)
.+++..|.+.|++.++.|...|+..|..+.+.++..++..+ -..++..|.+.+.. .+..||+.++..|....+....
T Consensus 399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT-HHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhH
Confidence 56788899999999999999999888888777665443322 23566666666654 3689999999999999887653
No 92
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=46.90 E-value=46 Score=36.79 Aligned_cols=74 Identities=9% Similarity=0.154 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 33 PGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 33 ~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
++-....+..|++.|.+.++.|...|...|-.+.+.+.+.+ -..+|++.|.+++.. .++.|+.-++.+|.....
T Consensus 116 ~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~----~~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 116 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV----EDQGFLDSLRDLIAD-SNPMVVANAVAALSEISE 189 (591)
T ss_dssp GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH----HHHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc----ccccHHHHHHHHhCC-CChhHHHHHHHHHHHHHh
Confidence 34456677779999999999999999888887777654432 224799999999875 578899988888877654
No 93
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.95 E-value=57 Score=31.54 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=13.6
Q ss_pred HHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 005810 37 KDVVKGIKKR-IGSRNSKVQLLALTLLETI 65 (676)
Q Consensus 37 KeAaRaIrKR-Lks~np~vqllALtLLE~c 65 (676)
...+..|.+. +++.++.+...|+..|..+
T Consensus 89 ~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l 118 (280)
T 1oyz_A 89 DNVFNILNNMALNDKSACVRATAIESTAQR 118 (280)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444444432 3445555555555544443
No 94
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=43.92 E-value=16 Score=38.82 Aligned_cols=51 Identities=25% Similarity=0.148 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Q 005810 19 WAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNC 69 (676)
Q Consensus 19 W~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNC 69 (676)
-.+++-+..++...++-.+.-+..++.-|..+|+-|++.||.+|..+-++-
T Consensus 157 k~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 157 SSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 334444555555555444445555666677888888888888888877654
No 95
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=43.12 E-value=71 Score=35.62 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=55.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChh
Q 005810 42 GIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYP 121 (676)
Q Consensus 42 aIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p 121 (676)
.|-..|.+.+..+..+||++|-.++..+. + .+.+++|.+.+.. .+.++|..++..|..-+..|..+ ..
T Consensus 354 ~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v------~~iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~~~~---~~ 421 (618)
T 1w63_A 354 TIVDCLKDLDVSIKRRAMELSFALVNGNN--I------RGMMKELLYFLDS-CEPEFKADCASGIFLAAEKYAPS---KR 421 (618)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHCCSSS--T------HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSSCCC---HH
T ss_pred HHHHHccCCChhHHHHHHHHHHHHccccc--H------HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCcc---HH
Confidence 34444567889999999999988876543 2 3445666665554 57899999999999999988643 34
Q ss_pred HHHH-HHHHHHHhc
Q 005810 122 QYYA-AYQELLRAG 134 (676)
Q Consensus 122 ~~~~-~Y~~Lk~kG 134 (676)
.+.+ ..+.|+..|
T Consensus 422 ~~v~~ll~lL~~~~ 435 (618)
T 1w63_A 422 WHIDTIMRVLTTAG 435 (618)
T ss_dssp HHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhcc
Confidence 3433 445555555
No 96
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=42.68 E-value=1.9e+02 Score=26.37 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHH-------------------HHHHHHhhc--CCChHHH
Q 005810 188 EIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYK-------------------QRVVHLVNS--TADESLL 246 (676)
Q Consensus 188 ELe~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq-------------------~rI~rLIq~--t~DEelL 246 (676)
-++++...+..|++.|..+... ..+.+.+.+++....+++ ..+-++-.. ..+.+++
T Consensus 12 Fl~Ea~e~L~~le~~L~~le~~---~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~l~ 88 (146)
T 1i5n_A 12 FFDEADELLADMEQHLLDLVPE---SPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDII 88 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTT---SCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 3677888888888888776322 234566677666555544 211111111 2477888
Q ss_pred HHHhhhhHHHHHHHHHHHh
Q 005810 247 CQGLQLNDDLQRLLAKHES 265 (676)
Q Consensus 247 ~eLL~lNDeLn~vL~rYE~ 265 (676)
..|+..-|.|...+..++.
T Consensus 89 ~~l~~~~D~l~~~l~~~~~ 107 (146)
T 1i5n_A 89 NLFLETKDIMQEQLDAYKN 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8999999999998877754
No 97
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=41.90 E-value=1e+02 Score=34.66 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCC-CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc--CCChhH
Q 005810 22 NIEICDMLNHDP-GQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK--KPDTHV 98 (676)
Q Consensus 22 ilEICD~Ins~~-~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~--k~d~~V 98 (676)
+=|.|+.+...+ ..+.+.++.|.+++...++.++..+|+.+--+...+.+ + ++-+..+.+.... ..+.+|
T Consensus 504 lGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-----~--~~~i~~~l~~~~~~~~~d~ev 576 (621)
T 2vgl_A 504 LGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE-----V--KATIQDVLRSDSQLKNADVEL 576 (621)
T ss_dssp HHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG-----G--HHHHHHHHSSHHHHSCSSHHH
T ss_pred hcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH-----H--HHHHHHHHHHHhcCCCCCHHH
Confidence 346677776544 34678899999999989999999888877666554431 1 1222222222333 578899
Q ss_pred HHHHHHHHHHH
Q 005810 99 KEKILILIDTW 109 (676)
Q Consensus 99 keKILeLIq~W 109 (676)
|+|..++..-.
T Consensus 577 rdRA~~y~~Ll 587 (621)
T 2vgl_A 577 QQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988775554
No 98
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=41.17 E-value=67 Score=34.77 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 38 eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
+.+..|.+.|++.++.+|+.|+.-+..|..+....-..+|.+...+..|+++++...+..++..+...|...
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~ni 147 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI 147 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 346667777888888888888877766654332222334556677777888776655566666555444433
No 99
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=40.75 E-value=1.7e+02 Score=28.52 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHH--------HHHHH----------hhc---CCChHHHH
Q 005810 189 IQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQ--------RVVHL----------VNS---TADESLLC 247 (676)
Q Consensus 189 Le~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq~--------rI~rL----------Iq~---t~DEelL~ 247 (676)
+++++..+..|++.|..+.. ...+.+.+.++++...+++= .|.++ +.. .-+.+++.
T Consensus 13 ~~Ea~e~L~~l~~~Ll~le~---~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~~~ 89 (225)
T 2lp4_A 13 FDEADELLADMEQHLLDLVP---ESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIIN 89 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCCT---TSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 78899999999999988842 23457888888887776662 22222 211 24889999
Q ss_pred HHhhhhHHHHHHHHHHHh
Q 005810 248 QGLQLNDDLQRLLAKHES 265 (676)
Q Consensus 248 eLL~lNDeLn~vL~rYE~ 265 (676)
-||.+.|.|...|+.++.
T Consensus 90 ll~~~~D~l~~~l~~~~~ 107 (225)
T 2lp4_A 90 LFLETKDIMQEQLDAYKN 107 (225)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999977653
No 100
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=40.47 E-value=53 Score=32.67 Aligned_cols=71 Identities=6% Similarity=0.013 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNS--KVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 39 AaRaIrKRLks~np--~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
.+..|.+.|.+.++ .+|..|...|..+..+. ......|.+..-+..|+++++. .+..|++.....|..++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHh
Confidence 35667778888877 78877776666655443 3456667777888999999976 568999999999988863
No 101
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=39.83 E-value=1.2e+02 Score=30.87 Aligned_cols=86 Identities=12% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHhcccchhhhhhc--------chHHHHH---
Q 005810 21 MNIEICDMLNHDPGQAKDVVKGIKKRIG----SRNSKVQLLALTLLETIIKNCGDIVHMHVA--------EKNVLHE--- 85 (676)
Q Consensus 21 lilEICD~Ins~~~~aKeAaRaIrKRLk----s~np~vqllALtLLE~cVKNCG~~Fh~eVa--------sk~FLne--- 85 (676)
.+.=||++.+..--..+.+..+|++-|+ ..+.. .|..|=.|++.||..+...-. .+..|+.
T Consensus 176 ~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~----~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~ 251 (284)
T 2vso_E 176 LVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEE----TLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFG 251 (284)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHH
Confidence 3555888888876666666666666664 44544 455566666778987764321 1345554
Q ss_pred -HHHHhc-cCCChhHHHHHHHHHHHHH
Q 005810 86 -MVKIAR-KKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 86 -LvKLvk-~k~d~~VkeKILeLIq~Wa 110 (676)
|.+++. .+.+.+||-.|..+|+.-.
T Consensus 252 ~l~~l~~~~~ls~RirFml~dlidLR~ 278 (284)
T 2vso_E 252 ILDNIIQTAKISSRIKFKLIDIKELRH 278 (284)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhc
Confidence 445543 3567888888888886543
No 102
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=39.63 E-value=1.4e+02 Score=35.80 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh
Q 005810 36 AKDVVKGIKKRIG-SRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 36 aKeAaRaIrKRLk-s~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF 113 (676)
..+.+..|.+.|. +.+..++..||..|-.+++.+|..|...+ .+++..|.+++.. .+..||++++..|.......
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhc
Confidence 5677777888888 58899999999999999998887665432 5667777666654 45789999988887766543
No 103
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=39.18 E-value=48 Score=35.41 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 40 VKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 40 aRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
+..|.+.|++.++.++..|+..|..+..+- ......|.+...+..|+++++. .+..|++.....|..+..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhc
Confidence 556778888889999999998888876543 3455577888899999999985 567898888888887764
No 104
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=38.29 E-value=98 Score=33.39 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
++..|.+-|++.+..++..|...|-.+..+|.......+.+...+.-|+++++. .|.+|+..+|+.|..-
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 456677788889999999999888888887765555566777888899999876 4778888887776543
No 105
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=37.67 E-value=79 Score=34.17 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~W 109 (676)
+.++..|.+-|.+.++.++..|+..|-.|..++..... .|.....+..|++++.. .+..|+..++..|...
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~-~v~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE-MVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNI 320 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH-HHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHH-HHHhccchHHHHHHhcC-CChhHHHHHHHHHHHH
Confidence 56888899999999999999999999999988765544 45566889999998876 4678998888887665
No 106
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=37.53 E-value=1.8e+02 Score=26.78 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHH--------HHHHHH----------h-hc--CCChHHHH
Q 005810 189 IQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYK--------QRVVHL----------V-NS--TADESLLC 247 (676)
Q Consensus 189 Le~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq--------~rI~rL----------I-q~--t~DEelL~ 247 (676)
+++++..+..|++.|..+... ..+.+.+.+++....+++ ..|.++ + .. .-+.+++.
T Consensus 17 leEa~E~L~~le~~Ll~le~~---~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l~d 93 (144)
T 3kyj_A 17 ADDGAQALDAMEASLLALQAG---EDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIVE 93 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 677888888888877766322 235678888877666655 112111 1 11 24788999
Q ss_pred HHhhhhHHHHHHHHHHHh
Q 005810 248 QGLQLNDDLQRLLAKHES 265 (676)
Q Consensus 248 eLL~lNDeLn~vL~rYE~ 265 (676)
.||.+-|.|...++.++.
T Consensus 94 lll~~~D~l~~lv~~~~~ 111 (144)
T 3kyj_A 94 ILLFASDTLRAMLEETAA 111 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999987775
No 107
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=37.13 E-value=86 Score=27.03 Aligned_cols=58 Identities=5% Similarity=0.157 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 40 VKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 40 aRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
+..|.+.|++.++.+...|+..|.. +.+++.+..|+++++. .+..||..++..|....
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~------------~~~~~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGN------------FQDERAVEPLIKLLED-DSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGG------------GCSHHHHHHHHHHHHH-CCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhC
Confidence 5888899999999999999887643 2346678888888865 56799999988887653
No 108
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=36.61 E-value=40 Score=31.02 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCCcH---HHHHHHHHHHhCC----CCHHHHHH-----HHHHHHHHHhcccchhhhh
Q 005810 21 MNIEICDMLNHDPGQA---KDVVKGIKKRIGS----RNSKVQLL-----ALTLLETIIKNCGDIVHMH 76 (676)
Q Consensus 21 lilEICD~Ins~~~~a---KeAaRaIrKRLks----~np~vqll-----ALtLLE~cVKNCG~~Fh~e 76 (676)
...++.+.+++.+... .|+++.++++|+. +....|+. ++..|..||..|..||..+
T Consensus 55 i~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfsee 122 (136)
T 3ayh_A 55 IQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEE 122 (136)
T ss_dssp HHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTT
T ss_pred HHHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHH
Confidence 3457888888876555 8999999999974 33444443 3466899999998888743
No 109
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=33.90 E-value=1.2e+02 Score=31.29 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 36 aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
.+..+-.|-.-|+++|.+++..||++|-.+..-.++.=| -++.++++..+++.. |+.|++++|..+..-.
T Consensus 148 ~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i----~~~I~~eI~elL~~e-D~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 148 SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH----LTLILDEIPSLLQND-NEFIVELALDVLEKAL 217 (265)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC----GGGTTTTHHHHHTCS-CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH----HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 566777777778899999999999887666554443222 135667788888876 8999999999887653
No 110
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=32.55 E-value=1.5e+02 Score=33.63 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-chhhhhhcc----hHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-DIVHMHVAE----KNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG-~~Fh~eVas----k~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
.+.+..|..-|++....++..+|.||+.++++-. ..++....+ ..|...|++++.-.+...+|++.+.+++..=.
T Consensus 316 ~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~ 395 (596)
T 4f52_E 316 QFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYIN 395 (596)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 3456678888889999999999999999888764 244444433 45666677777667888999999999999888
Q ss_pred HhCCCCCChhHHHHHH
Q 005810 112 AFGGPRARYPQYYAAY 127 (676)
Q Consensus 112 aF~~~~~~~p~~~~~Y 127 (676)
.|... +||.-+..+.
T Consensus 396 ~~~~e-~R~~iL~~LL 410 (596)
T 4f52_E 396 KLDSQ-GKYTLFRCLL 410 (596)
T ss_dssp HBCHH-HHHHHHHHHH
T ss_pred hCChH-HHHHHHHHHH
Confidence 88743 4565554443
No 111
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=32.47 E-value=1.3e+02 Score=31.38 Aligned_cols=102 Identities=10% Similarity=0.098 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCC------C---CHHHHHHHHHHHHHHH--hcccchhhhhh-----cchHHH
Q 005810 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIGS------R---NSKVQLLALTLLETII--KNCGDIVHMHV-----AEKNVL 83 (676)
Q Consensus 20 ~lilEICD~Ins~~~~aKeAaRaIrKRLks------~---np~vqllALtLLE~cV--KNCG~~Fh~eV-----ask~FL 83 (676)
....++|..+|-+..-..+|.+..++ +++ . .....+.|= |--+|. ++.+-.+.+.+ .=.+|+
T Consensus 4 ~rF~~lC~~Lnld~~~~~~Aw~~~~~-~~~~~~~~~~~~~~~~~~w~ac-LY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff 81 (304)
T 2qdj_A 4 PDFTALCQKLKIPDHVRERAWLTWEK-VSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNIEISVHKFF 81 (304)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH-HHC----------CHHHHHHHH-HHHHHHHHTCCCSCHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHH-HhccccccCCCccchHHHHHHh-HHHHhhccCCCcCcHHHHHHHcCCCHHHHH
Confidence 45678999999998878888888776 222 1 233333333 333333 22223333222 226888
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 005810 84 HEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQEL 130 (676)
Q Consensus 84 neLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~L 130 (676)
++|.++ . .+.+++++|-+|-......+. -|.+|..+|+.|
T Consensus 82 ~k~~~~-d--~~~~~~~~i~~Le~~f~v~~~----l~kky~~if~~i 121 (304)
T 2qdj_A 82 NLLKEI-D--TSTKVDNAMSRLLKKYDVLFA----LFSKLERTCELI 121 (304)
T ss_dssp HHHTTS-C--CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHc-C--CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 888883 3 677899998888777766654 356677777665
No 112
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=32.30 E-value=1.3e+02 Score=36.07 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHHHh
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP-DTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~-d~~VkeKILeLIq~Wa~aF 113 (676)
.+.+|.+.|++.++++...++.+|..+++.|+..+... -.+++..|.++++.+. ...|+..++..|..|...+
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~--l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH--IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG--HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHH--HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 34556667889999999999999999999987655432 2467777777776543 3689999999999987644
No 113
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=32.29 E-value=83 Score=29.11 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcC-------CChHHHHHHhhhhHHHHHHHHH
Q 005810 214 LRQEVIVDLVDQCRTYKQRVVHLVNST-------ADESLLCQGLQLNDDLQRLLAK 262 (676)
Q Consensus 214 ~dnElIqEL~~qCRsmq~rI~rLIq~t-------~DEelL~eLL~lNDeLn~vL~r 262 (676)
.|-+..+.|++.++.+...+-+||+.. .|++.-..|..++++|..+...
T Consensus 68 eDp~~~~rLl~AAk~La~At~~MVeaAK~~A~NP~d~~~q~~Lr~Aae~L~~at~~ 123 (131)
T 2l7a_A 68 SDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRMATNA 123 (131)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999998853 5778899999999999876643
No 114
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=32.20 E-value=37 Score=29.01 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhc
Q 005810 96 THVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (676)
Q Consensus 96 ~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kG 134 (676)
..+++++.++|..|....+. -..+..+++.|++-|
T Consensus 51 ~d~~eq~~~mL~~W~~~~g~----~At~~~L~~AL~~~~ 85 (99)
T 1fad_A 51 RSLSERVRESLKVWKNAEKK----NASVAGLVKALRTCR 85 (99)
T ss_dssp SCHHHHHHHHHHHHHHHHGG----GGSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHCC
Confidence 46999999999999998743 234666777776654
No 115
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=30.48 E-value=1.1e+02 Score=35.46 Aligned_cols=85 Identities=11% Similarity=0.176 Sum_probs=56.6
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc-CCChhHHHHHH
Q 005810 25 ICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK-KPDTHVKEKIL 103 (676)
Q Consensus 25 ICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~-k~d~~VkeKIL 103 (676)
+|+.+...+..-..++..|.+.| + +.++..|-..|..+++.|+..+...+ ..+++.|.+++.+ ..+..++..++
T Consensus 533 ~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 533 YCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp THHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHH
Confidence 44444444555667777777777 2 67888888888888899987665433 4677777777764 35667888877
Q ss_pred HHHHHHHHHhC
Q 005810 104 ILIDTWQEAFG 114 (676)
Q Consensus 104 eLIq~Wa~aF~ 114 (676)
+.|..-...+.
T Consensus 608 ~ai~~i~~~~~ 618 (971)
T 2x1g_F 608 FSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 77777766543
No 116
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=30.09 E-value=1.4e+02 Score=29.64 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCCc-cccchHHHHHHHHHHHHHHHHHHHHhh
Q 005810 197 DVLAEMLNALDPNNK-EGLRQEVIVDLVDQCRTYKQRVVHLVN 238 (676)
Q Consensus 197 kLLnEML~~~~P~~~-e~~dnElIqEL~~qCRsmq~rI~rLIq 238 (676)
--|..|+.++.-+++ ...-.+.++++.++|+.++.++++|+.
T Consensus 48 aAL~~MVanLT~gKkky~~~e~~~~~i~~~~~~l~~~ll~l~d 90 (214)
T 1o5h_A 48 CALAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAK 90 (214)
T ss_dssp HHHHHHHHHTTTTCTTCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888876644 333467799999999999999999986
No 117
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=29.34 E-value=1.5e+02 Score=30.89 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCCh-hHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 005810 52 SKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT-HVKEKILILIDTWQEAFGGPRARYPQYYAAYQE 129 (676)
Q Consensus 52 p~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~-~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~ 129 (676)
....-+|+.++|++.++. . .+ +.+.+++|++|++.-++. .-|.+.+.-...|...+.+.....+.+..+.-.
T Consensus 70 ~sa~DLa~llvev~~~~~-~----~~-~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 70 GSGTDLIFYLLEVYDLAE-V----KV-DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHTT-C----CC-SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcC-C----CC-CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 334447888888888863 2 22 567889999988753222 348899999999999987543345666554443
No 118
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=28.92 E-value=50 Score=29.60 Aligned_cols=69 Identities=10% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhcc
Q 005810 63 ETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (676)
Q Consensus 63 E~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi 135 (676)
+.+.+|-|.......-.-.|-+.=+..++...+..+++++.++|..|.+..+.. ..+..+++.|++-|.
T Consensus 28 ~~Ia~~LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~----AT~~~L~~AL~~~~l 96 (115)
T 2o71_A 28 NQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQ----ATFQSLHNGLRAVEV 96 (115)
T ss_dssp HHHHHHCCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHcCC
Confidence 333455554333222222233332333332233589999999999999986432 346677777877664
No 119
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=28.87 E-value=53 Score=37.94 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc-CCChhHHHHHHHHHHHHH
Q 005810 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK-KPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 38 eAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~-k~d~~VkeKILeLIq~Wa 110 (676)
.++..|-+.|.+ +.++..|...|..+++.|+..|...+ ..+++.|.+++.+ ..+..++..+++.|..-.
T Consensus 529 ~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 529 SVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp TTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 344455555644 78899999999999999987765433 4677777776654 234566666555555443
No 120
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=28.35 E-value=56 Score=29.23 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=41.3
Q ss_pred HHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHhcc
Q 005810 62 LETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (676)
Q Consensus 62 LE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~kGi 135 (676)
|+.+.+|-|.......-.-.|-+.=+..++...+..+++++.++|..|.+.-+.. ..+..+++.|++-|.
T Consensus 27 l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~----AT~~~L~~AL~~~~l 96 (114)
T 2of5_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQ----ATFQSLHNGLRAVEV 96 (114)
T ss_dssp HHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHcCC
Confidence 4444566665444333222344443333433333589999999999999986432 235667777776553
No 121
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=27.78 E-value=62 Score=29.32 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHH
Q 005810 80 KNVLHEMVKIARK-KPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 80 k~FLneLvKLvk~-k~d~~VkeKILeLIq~Wa~a 112 (676)
|+||..|+++.++ +..++|-++|.+||+..-+.
T Consensus 23 k~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~~ 56 (114)
T 2p6v_A 23 XNFLSTLIXLASSGXQSTETAANVXELVQNLLDG 56 (114)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccChHHHHHHHHHHHHHHHc
Confidence 6899999999986 45678888888888877653
No 122
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=27.03 E-value=1.2e+02 Score=34.22 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 005810 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (676)
Q Consensus 37 KeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa 110 (676)
..++..|.+.|.+.++.+|..|...|..+.... ......|....-+..|+++++. .+..|++.+...|..++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 347888888999999999999988776666543 2456667777888889999876 46788888888777665
No 123
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=26.99 E-value=65 Score=29.16 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=37.2
Q ss_pred HHHHHhcccchhhhhhcchHHHHH-HHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHh
Q 005810 62 LETIIKNCGDIVHMHVAEKNVLHE-MVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRA 133 (676)
Q Consensus 62 LE~cVKNCG~~Fh~eVask~FLne-LvKLvk~k~d~~VkeKILeLIq~Wa~aF~~~~~~~p~~~~~Y~~Lk~k 133 (676)
++.+.++-|..+....-.=.|-+. |..|-... +..+++++.+||..|...-+.. ..+..+++.|++-
T Consensus 9 f~~Ia~~lG~~Wk~LAR~LGlse~dId~Ie~~~-p~dl~eq~~~mL~~W~~r~G~~----ATv~~L~~AL~~i 76 (122)
T 3ezq_B 9 FNVICDNVGKDWRRLARQLKVSDTKIDSIEDRY-PRNLTERVRESLRIWKNTEKEN----ATVAHLVGALRSC 76 (122)
T ss_dssp HHHHHTTCCTTHHHHHHHTTCCHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHCTTT----CCHHHHHHHHHHT
T ss_pred HHHHHHhhhhhHHHHHHHhCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHhhCCC----chHHHHHHHHHHC
Confidence 455556666544432222233333 33332232 2359999999999999886532 2355566666543
No 124
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.89 E-value=2.2e+02 Score=28.30 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---CChHHHHHHhhhhHHHHHHHH
Q 005810 220 VDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLA 261 (676)
Q Consensus 220 qEL~~qCRsmq~rI~rLIq~t---~DEelL~eLL~lNDeLn~vL~ 261 (676)
..+......+|+|..+-+... .-+.++.+||-+-|+|-+||.
T Consensus 83 lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~ 127 (213)
T 4ani_A 83 LRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALK 127 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445666777888888776654 789999999999999999985
No 125
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=26.73 E-value=5e+02 Score=28.23 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=51.9
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCC------------------------------
Q 005810 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRN------------------------------ 51 (676)
Q Consensus 2 v~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~n------------------------------ 51 (676)
+++||++.|+... .|-..+-.+--.-+ ....+.|.+..|..|.....
T Consensus 47 L~~LVe~Lt~~~~--~D~~f~~~FLlTyR-sF~tp~eLL~~Li~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 123 (490)
T 2ii0_A 47 VIKLIERLTYHMY--ADPNFVRTFLTTYR-SFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYI 123 (490)
T ss_dssp HHHHHHHHTCSSS--CCHHHHHHHHHHGG-GTSCHHHHHHHHHHHHCCCCCCCCHHHHHHHHTTCSCCCHHHHHHHHHTH
T ss_pred HHHHHHHHccCCC--CCHHHHHHHHHHHH-hhCCHHHHHHHHHHHHhccCCCchhhhhhhhccCCccchHHHHHHHHhhh
Confidence 5789999998754 34333322222222 33457777777777765421
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc
Q 005810 52 SKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK 92 (676)
Q Consensus 52 p~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~ 92 (676)
..++++-+.+|..-|++|...|.. +.+++..|...+..
T Consensus 124 ~~iq~rV~~vl~~Wv~~~~~DF~~---d~~ll~~L~~F~~~ 161 (490)
T 2ii0_A 124 QPVQLRVLNVCRHWVEHHFYDFER---DAYLLQRMEEFIGT 161 (490)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHH---CHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhCcccccc---CHHHHHHHHHHHHh
Confidence 246778888888888888766653 34566666655543
No 126
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=25.90 E-value=2.1e+02 Score=24.63 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHH--------HHH----------HHHhhc---CCChHHHH
Q 005810 189 IQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYK--------QRV----------VHLVNS---TADESLLC 247 (676)
Q Consensus 189 Le~Ar~n~kLLnEML~~~~P~~~e~~dnElIqEL~~qCRsmq--------~rI----------~rLIq~---t~DEelL~ 247 (676)
+++++..+..|++.|..+.. ...+.+.+.+++....+++ ..| +..+.. ..+.+++.
T Consensus 12 ~~Ea~e~l~~l~~~l~~le~---~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~~l~~ 88 (113)
T 2lch_A 12 TDELKELIQNVNDDIKEVEK---NPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLID 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 56677777777776665521 1123556666666555444 111 111211 25778888
Q ss_pred HHhhhhHHHHHHHHHH
Q 005810 248 QGLQLNDDLQRLLAKH 263 (676)
Q Consensus 248 eLL~lNDeLn~vL~rY 263 (676)
.|+..-|.|...++.+
T Consensus 89 ~l~~~~d~l~~~l~~~ 104 (113)
T 2lch_A 89 KVKKKLDMVTRELDKK 104 (113)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999988888543
No 127
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=25.57 E-value=1.1e+02 Score=32.02 Aligned_cols=71 Identities=6% Similarity=-0.007 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~ 111 (676)
++..|.+.|++.+..++..|...|-.|...+ ......|.+...+.-|++|++.+ +..||+.+...|.....
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence 5677888889999999999999988887543 34566777888899999988764 67889888888877654
No 128
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=25.35 E-value=1.2e+02 Score=31.48 Aligned_cols=25 Identities=16% Similarity=0.531 Sum_probs=20.6
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhCC
Q 005810 91 RKKPDTHVKEKILILIDTWQEAFGG 115 (676)
Q Consensus 91 k~k~d~~VkeKILeLIq~Wa~aF~~ 115 (676)
+++.+.+|+..+..||..|...+..
T Consensus 54 rkh~~~~v~~~Ak~Li~~WK~~v~~ 78 (309)
T 1pqv_S 54 KKSTNVEISKLVKKMISSWKDAINK 78 (309)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3347789999999999999987653
No 129
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=23.81 E-value=1.1e+02 Score=36.04 Aligned_cols=68 Identities=10% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccC--CChhHHHHHHHHHH
Q 005810 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKK--PDTHVKEKILILID 107 (676)
Q Consensus 39 AaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k--~d~~VkeKILeLIq 107 (676)
++..|..-|.+.+.+++..|+..|.-++.. +......|.+...+.-|.+|++.. .+.+|.+.+++.|.
T Consensus 709 ~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~ 778 (810)
T 3now_A 709 WLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLA 778 (810)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHH
Confidence 444666777899999999999999999884 455667788889999999998654 45666665555444
No 130
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=23.24 E-value=3.4e+02 Score=32.27 Aligned_cols=106 Identities=8% Similarity=0.024 Sum_probs=64.0
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccch--hhhhhcch
Q 005810 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI--VHMHVAEK 80 (676)
Q Consensus 3 ~~LIekATse~l~~pDW~lilEICD~Ins~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~--Fh~eVask 80 (676)
...|+-+-++.-....-....++++.+++++++..-|...|.+.- ..++.+...|+.+|+..|+.-... |+ ...
T Consensus 9 ~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~-~~~~~vr~fa~~~L~~~I~~l~~e~~~~---~~~ 84 (980)
T 3ibv_A 9 ENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKT-KYKPSTRLICLQTLSEKVREWNNESNLL---ELQ 84 (980)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTT-TSCHHHHHHHHHHHHHHHHHCCTTTSHH---HHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHhCChhhhHH---HHH
Confidence 345555555543344556678889999998866665555543210 027999999999999999921111 00 111
Q ss_pred HHHHHHHHHhcc----CCChhHHHHHHHHHHHHHHH
Q 005810 81 NVLHEMVKIARK----KPDTHVKEKILILIDTWQEA 112 (676)
Q Consensus 81 ~FLneLvKLvk~----k~d~~VkeKILeLIq~Wa~a 112 (676)
.+-+.|..++.. ..+..||.|+..+|..-...
T Consensus 85 ~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 85 MIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 222334444432 34568999998887766655
No 131
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=22.80 E-value=2.3e+02 Score=25.35 Aligned_cols=69 Identities=4% Similarity=0.048 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhc
Q 005810 22 NIEICDMLNHDPGQAKDVVKGIKKRIGS----RNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIAR 91 (676)
Q Consensus 22 ilEICD~Ins~~~~aKeAaRaIrKRLks----~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk 91 (676)
+-++..+|.+....-++|+..++++|.. ....-.-.|+..|.++=+-|- .|-.-..=.+||..|++.+.
T Consensus 6 v~DFk~ll~~~~~~~~~A~~qm~~vI~~Ll~~s~~~~y~ka~ecl~~~R~~~i-~~~ep~~yN~Fl~~Lk~~~~ 78 (120)
T 1q2z_A 6 AENFRVLVKQKKASFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAI-KFSEEQRFNNFLKALQEKVE 78 (120)
T ss_dssp HHHHHHHTSSSCCTTTHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH-hccChHHHHHHHHHHHHHHH
Confidence 5667777876555567777777766642 344555678888888888874 22111122477888876544
No 132
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.39 E-value=3.2e+02 Score=23.89 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhhcCC-CCccccchHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHhhhhHHHHHHHHHHHhh
Q 005810 189 IQNARGIMDVLAEMLNALDP-NNKEGLRQEVIV-DLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESF 266 (676)
Q Consensus 189 Le~Ar~n~kLLnEML~~~~P-~~~e~~dnElIq-EL~~qCRsmq~rI~rLIq~t~DEelL~eLL~lNDeLn~vL~rYE~l 266 (676)
|..+-.++..|.-|+.-+-. .+...+.+ -|. +|.-.|..+..++-.|......|.++.++-.+=-+++.+-..|...
T Consensus 12 i~t~s~niq~l~k~~~qlGTkrD~~~LR~-~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ek 90 (97)
T 1hs7_A 12 IETFAEQSRVLEKECTKIGSKRDSKELRY-KIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQR 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCHHHHH-HHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchHHHHH-HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788777776621 12222233 334 7888999999988866554358889998888888888888888876
Q ss_pred hcC
Q 005810 267 ASG 269 (676)
Q Consensus 267 ~~g 269 (676)
++.
T Consensus 91 ~~e 93 (97)
T 1hs7_A 91 KSL 93 (97)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 133
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=22.33 E-value=1.5e+02 Score=27.35 Aligned_cols=75 Identities=7% Similarity=-0.062 Sum_probs=57.9
Q ss_pred CCCCCcC-HHHHHHHHHHHhCCCCcHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHH
Q 005810 12 DMLIGPD-WAMNIEICDMLNHDPGQAKDVVKGIKK--RIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK 88 (676)
Q Consensus 12 e~l~~pD-W~lilEICD~Ins~~~~aKeAaRaIrK--RLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvK 88 (676)
+...+.| +.-+.-+||.|...-+.-++.+..+.+ |.++-++...-.+..-++.++-.| |......|+|++.+..
T Consensus 29 e~~~e~DF~~eVKPf~d~vd~~l~~w~~~a~~~I~~~rpkY~~~~Qie~~~eNie~lsVq~---f~~~TskKrF~e~~kS 105 (131)
T 2hfi_A 29 NSNHSYDFFETIKPAVEENDELAARWAEGALELIKVRRPKYVHKEQIEAVKDNFLELVLQS---YVHHIHKKRFKDITES 105 (131)
T ss_dssp SSCCCCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHH---HHCCCCSHHHHHHHHH
T ss_pred HcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH---hCCCcchhHHHHHHHH
Confidence 3445555 456777899888876666665555554 688999999999999999999999 6678899999998876
Q ss_pred H
Q 005810 89 I 89 (676)
Q Consensus 89 L 89 (676)
+
T Consensus 106 V 106 (131)
T 2hfi_A 106 V 106 (131)
T ss_dssp H
T ss_pred H
Confidence 4
No 134
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=21.38 E-value=40 Score=29.53 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.4
Q ss_pred HHhhhhHHHHHHHHH
Q 005810 248 QGLQLNDDLQRLLAK 262 (676)
Q Consensus 248 eLL~lNDeLn~vL~r 262 (676)
.+=.+||+||+.|..
T Consensus 53 ~IRdLNDEINkL~rE 67 (92)
T 1x4t_A 53 RIRDLNDEINKLLRE 67 (92)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467889999999964
No 135
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=21.18 E-value=1.8e+02 Score=34.18 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=61.7
Q ss_pred CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh
Q 005810 34 GQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 113 (676)
Q Consensus 34 ~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~Fh~eVask~FLneLvKLvk~k~d~~VkeKILeLIq~Wa~aF 113 (676)
....+.++.+++.|.+.....+..|+..|.++.....-+- ..+.+..|+..|+++++.+.+..+.--++.+|..-....
T Consensus 330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe-~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKI-MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHH-HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHH-HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence 3467899999999998887789999999999988764332 234568999999999987566677777888777776554
Q ss_pred C
Q 005810 114 G 114 (676)
Q Consensus 114 ~ 114 (676)
.
T Consensus 409 ~ 409 (778)
T 3opb_A 409 E 409 (778)
T ss_dssp C
T ss_pred c
Confidence 3
No 136
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=21.13 E-value=1.2e+02 Score=24.48 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 005810 219 IVDLVDQCRTYKQRVVHLVNS 239 (676)
Q Consensus 219 IqEL~~qCRsmq~rI~rLIq~ 239 (676)
-+.++..|.+.|+.++.|+.+
T Consensus 33 ke~Iv~eCnavrqALQdLlsE 53 (59)
T 4e18_B 33 RERIVAECNAVRQALQDLLSE 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999998864
No 137
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.79 E-value=1e+02 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.003 Sum_probs=22.9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHhhhcC
Q 005810 243 ESLLCQGLQLNDDLQRLLAKHESFASG 269 (676)
Q Consensus 243 EelL~eLL~lNDeLn~vL~rYE~l~~g 269 (676)
|+-+++||..|.+|.+...|-..+.++
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 677889999999999999988877654
No 138
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=20.51 E-value=1.5e+02 Score=35.06 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=35.1
Q ss_pred CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh
Q 005810 31 HDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (676)
Q Consensus 31 s~~~~aKeAaRaIrKRLks~np~vqllALtLLE~cVKNCG~~F 73 (676)
..+..-..++..|-+.|.+.++.|+..|-..|..+++.|+..|
T Consensus 533 ~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l 575 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF 575 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334456677778888888999999999999999999998765
No 139
>2lig_A Aspartate receptor; chemotaxis; HET: PHN; 2.00A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1lih_A*
Probab=20.29 E-value=2e+02 Score=24.46 Aligned_cols=54 Identities=9% Similarity=0.231 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHh---hcCCChHHHH-HHhhhhHHHHHHHHHHHhhhc
Q 005810 215 RQEVIVDLVDQCRTYKQRVVHLV---NSTADESLLC-QGLQLNDDLQRLLAKHESFAS 268 (676)
Q Consensus 215 dnElIqEL~~qCRsmq~rI~rLI---q~t~DEelL~-eLL~lNDeLn~vL~rYE~l~~ 268 (676)
+.+++.++......+...+.+++ ..-..++... .+-.+.+.+..++.+|..+..
T Consensus 92 ~~~l~~~~~~~~~~y~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 149 (164)
T 2lig_A 92 MAEASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNALGEALGNYARVSE 149 (164)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 45566666555555554444444 3333233321 223344666666666665533
Done!