Query 005811
Match_columns 676
No_of_seqs 158 out of 226
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 14:05:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02705 beta-amylase 100.0 5E-262 1E-266 2092.9 58.3 632 27-675 34-676 (681)
2 PLN02905 beta-amylase 100.0 6E-245 1E-249 1963.8 56.6 615 50-675 63-696 (702)
3 PLN00197 beta-amylase; Provisi 100.0 2E-191 4E-196 1533.7 45.1 435 240-675 97-540 (573)
4 PLN02803 beta-amylase 100.0 5E-191 1E-195 1526.4 46.7 428 244-675 81-514 (548)
5 PLN02801 beta-amylase 100.0 3E-191 6E-196 1522.8 44.5 430 245-675 12-449 (517)
6 PLN02161 beta-amylase 100.0 2E-188 4E-193 1500.6 46.5 430 242-675 85-531 (531)
7 PF01373 Glyco_hydro_14: Glyco 100.0 1E-168 3E-173 1325.9 25.9 389 252-667 1-402 (402)
8 PF05687 DUF822: Plant protein 100.0 5.7E-41 1.2E-45 314.2 10.5 130 62-204 2-133 (150)
9 PF02449 Glyco_hydro_42: Beta- 99.3 2.8E-11 6.1E-16 127.1 12.8 218 269-535 9-238 (374)
10 PF01301 Glyco_hydro_35: Glyco 98.2 7.2E-06 1.6E-10 86.3 9.5 142 269-462 23-171 (319)
11 COG1874 LacA Beta-galactosidas 97.6 0.00047 1E-08 79.7 13.1 150 268-467 28-194 (673)
12 PLN03059 beta-galactosidase; P 97.5 0.0013 2.8E-08 77.7 13.8 146 268-462 57-213 (840)
13 TIGR03356 BGL beta-galactosida 97.0 0.0049 1.1E-07 67.6 11.7 111 266-416 50-164 (427)
14 PF00150 Cellulase: Cellulase 96.8 0.0054 1.2E-07 60.3 8.8 103 270-416 21-127 (281)
15 PLN02705 beta-amylase 96.0 0.01 2.3E-07 68.1 6.1 79 14-93 12-100 (681)
16 PF00232 Glyco_hydro_1: Glycos 95.5 0.055 1.2E-06 59.6 8.9 101 267-407 55-159 (455)
17 KOG0496 Beta-galactosidase [Ca 95.4 0.033 7.2E-07 64.4 7.2 142 268-419 47-203 (649)
18 smart00633 Glyco_10 Glycosyl h 94.7 0.1 2.2E-06 53.0 7.8 211 293-607 3-215 (254)
19 PRK09852 cryptic 6-phospho-bet 94.3 0.3 6.5E-06 54.9 10.7 112 266-416 67-183 (474)
20 PF14871 GHL6: Hypothetical gl 93.7 1.2 2.6E-05 42.2 12.0 108 274-404 4-121 (132)
21 cd03465 URO-D_like The URO-D _ 92.4 0.75 1.6E-05 47.6 9.4 108 272-392 170-288 (330)
22 PRK15014 6-phospho-beta-glucos 91.5 0.42 9.2E-06 53.7 7.0 113 266-417 65-182 (477)
23 PF02638 DUF187: Glycosyl hydr 91.3 18 0.00039 38.7 18.4 230 266-578 15-258 (311)
24 PRK13511 6-phospho-beta-galact 89.3 1.5 3.3E-05 49.1 8.9 110 266-416 50-163 (469)
25 TIGR01233 lacG 6-phospho-beta- 88.8 1 2.2E-05 50.5 7.1 110 266-416 49-162 (467)
26 PF00331 Glyco_hydro_10: Glyco 87.7 1.2 2.6E-05 47.3 6.4 205 275-585 26-247 (320)
27 PLN02814 beta-glucosidase 87.0 3 6.4E-05 47.5 9.4 112 266-416 73-188 (504)
28 PRK09589 celA 6-phospho-beta-g 86.1 1.5 3.2E-05 49.4 6.4 112 266-416 63-179 (476)
29 PLN02849 beta-glucosidase 85.7 4.3 9.2E-05 46.3 9.7 112 266-416 75-190 (503)
30 PLN02998 beta-glucosidase 85.6 3.6 7.9E-05 46.8 9.1 112 266-416 78-193 (497)
31 PRK01060 endonuclease IV; Prov 85.5 1.7 3.7E-05 44.0 5.9 59 254-324 1-64 (281)
32 PRK02412 aroD 3-dehydroquinate 84.2 10 0.00022 39.2 10.9 112 273-424 98-211 (253)
33 TIGR01093 aroD 3-dehydroquinat 83.7 9.3 0.0002 38.7 10.2 109 276-425 84-194 (228)
34 PF10566 Glyco_hydro_97: Glyco 83.7 0.8 1.7E-05 48.5 2.7 105 243-375 81-186 (273)
35 TIGR01463 mtaA_cmuA methyltran 82.7 1.7 3.7E-05 45.7 4.7 59 272-334 182-243 (340)
36 PRK09593 arb 6-phospho-beta-gl 82.2 3.6 7.9E-05 46.4 7.3 112 266-416 69-185 (478)
37 PRK13111 trpA tryptophan synth 81.7 5.7 0.00012 41.6 8.0 89 247-366 88-177 (258)
38 cd00465 URO-D_CIMS_like The UR 81.3 2.6 5.6E-05 43.2 5.3 62 270-335 144-210 (306)
39 PF00128 Alpha-amylase: Alpha 79.6 3.7 7.9E-05 40.5 5.5 64 268-334 2-80 (316)
40 cd00502 DHQase_I Type I 3-dehy 78.5 32 0.00069 34.6 11.8 140 274-456 80-221 (225)
41 PF07745 Glyco_hydro_53: Glyco 77.7 4.6 0.0001 43.9 6.1 53 274-331 28-80 (332)
42 cd03308 CmuA_CmuC_like CmuA_Cm 76.6 4.2 9E-05 44.2 5.4 82 248-333 172-277 (378)
43 PLN02591 tryptophan synthase 76.4 12 0.00025 39.3 8.3 89 247-366 77-166 (250)
44 PRK10785 maltodextrin glucosid 76.3 60 0.0013 37.8 14.7 111 268-396 177-312 (598)
45 COG2723 BglB Beta-glucosidase/ 76.2 70 0.0015 36.8 14.8 148 266-461 55-207 (460)
46 cd03307 Mta_CmuA_like MtaA_Cmu 75.8 3 6.6E-05 43.8 4.0 56 273-334 174-232 (326)
47 PRK11572 copper homeostasis pr 75.8 8.4 0.00018 40.6 7.1 74 248-332 51-127 (248)
48 cd03311 CIMS_C_terminal_like C 75.7 11 0.00025 39.6 8.1 102 270-373 155-261 (332)
49 PF01487 DHquinase_I: Type I 3 74.7 11 0.00025 37.5 7.5 124 257-424 61-188 (224)
50 PLN02361 alpha-amylase 74.1 10 0.00022 42.2 7.6 67 267-336 26-106 (401)
51 PF01261 AP_endonuc_2: Xylose 73.4 3.2 7E-05 38.8 3.1 47 276-327 1-47 (213)
52 PRK13209 L-xylulose 5-phosphat 73.2 6.6 0.00014 39.9 5.5 67 255-326 8-76 (283)
53 PRK08508 biotin synthase; Prov 72.7 19 0.00042 37.6 8.9 55 267-327 40-95 (279)
54 PHA00442 host recBCD nuclease 71.4 3.7 8E-05 34.7 2.6 28 273-319 29-56 (59)
55 cd06592 GH31_glucosidase_KIAA1 70.6 48 0.001 35.1 11.3 115 267-399 27-151 (303)
56 PRK06252 methylcobalamin:coenz 70.0 4.9 0.00011 42.3 3.9 55 273-333 183-240 (339)
57 smart00642 Aamy Alpha-amylase 68.6 19 0.00041 35.1 7.3 69 266-334 15-97 (166)
58 PRK09856 fructoselysine 3-epim 65.2 15 0.00032 37.1 6.1 53 271-330 14-70 (275)
59 PF01229 Glyco_hydro_39: Glyco 64.6 8.7 0.00019 43.1 4.7 59 270-330 39-107 (486)
60 PF13653 GDPD_2: Glycerophosph 64.5 6.1 0.00013 29.4 2.3 18 273-290 10-27 (30)
61 TIGR00542 hxl6Piso_put hexulos 63.7 14 0.0003 37.7 5.6 55 269-326 15-71 (279)
62 PF01208 URO-D: Uroporphyrinog 63.5 5.1 0.00011 41.9 2.5 110 274-399 186-307 (343)
63 PRK09875 putative hydrolase; P 63.2 1.8E+02 0.004 31.2 13.9 68 263-349 27-94 (292)
64 TIGR00433 bioB biotin syntheta 62.4 17 0.00037 37.3 6.0 55 273-329 123-180 (296)
65 cd03310 CIMS_like CIMS - Cobal 62.4 16 0.00034 38.0 5.8 59 270-334 151-211 (321)
66 cd04724 Tryptophan_synthase_al 61.8 19 0.0004 37.0 6.1 64 248-330 76-139 (242)
67 PF00290 Trp_syntA: Tryptophan 61.8 18 0.0004 38.2 6.2 90 246-366 85-175 (259)
68 TIGR03234 OH-pyruv-isom hydrox 61.3 18 0.00038 36.3 5.7 43 271-325 15-57 (254)
69 PRK13210 putative L-xylulose 5 60.5 21 0.00045 36.0 6.1 52 271-326 17-71 (284)
70 CHL00200 trpA tryptophan synth 60.3 38 0.00082 35.8 8.1 92 247-369 90-182 (263)
71 PF03659 Glyco_hydro_71: Glyco 57.8 30 0.00064 38.4 7.2 56 268-330 15-70 (386)
72 PLN02229 alpha-galactosidase 57.7 20 0.00043 40.6 5.9 70 267-337 77-160 (427)
73 cd06593 GH31_xylosidase_YicI Y 56.7 30 0.00065 36.3 6.7 87 266-367 20-114 (308)
74 PLN02389 biotin synthase 56.1 24 0.00052 39.0 6.1 51 273-324 178-230 (379)
75 COG3693 XynA Beta-1,4-xylanase 56.0 11 0.00025 41.4 3.6 111 293-459 69-182 (345)
76 PRK09989 hypothetical protein; 55.5 28 0.00061 35.2 6.1 43 271-325 16-58 (258)
77 TIGR01515 branching_enzym alph 55.5 25 0.00055 40.9 6.5 56 268-329 154-228 (613)
78 cd08627 PI-PLCc_gamma1 Catalyt 53.9 30 0.00064 36.4 6.0 65 264-331 24-99 (229)
79 PLN02808 alpha-galactosidase 53.6 23 0.00051 39.5 5.5 62 267-328 46-118 (386)
80 PF03932 CutC: CutC family; I 53.5 19 0.00041 36.9 4.5 73 246-329 48-123 (201)
81 cd00717 URO-D Uroporphyrinogen 53.2 15 0.00032 38.8 3.9 77 273-364 180-260 (335)
82 PRK13398 3-deoxy-7-phosphohept 52.0 49 0.0011 35.0 7.4 63 260-325 31-96 (266)
83 TIGR02402 trehalose_TreZ malto 50.9 36 0.00078 39.2 6.7 61 268-333 109-186 (542)
84 PRK09997 hydroxypyruvate isome 49.9 32 0.00068 34.8 5.4 41 271-323 16-56 (258)
85 PF14488 DUF4434: Domain of un 49.6 65 0.0014 31.7 7.3 60 268-329 18-87 (166)
86 PRK09441 cytoplasmic alpha-amy 48.9 40 0.00086 37.8 6.5 68 267-334 19-108 (479)
87 TIGR00262 trpA tryptophan synt 48.7 58 0.0013 34.0 7.2 64 248-330 87-150 (256)
88 PF01055 Glyco_hydro_31: Glyco 48.5 53 0.0011 36.0 7.2 89 266-367 39-134 (441)
89 TIGR00695 uxuA mannonate dehyd 48.1 30 0.00064 38.9 5.3 64 275-347 15-78 (394)
90 TIGR00674 dapA dihydrodipicoli 47.7 38 0.00083 35.3 5.8 114 246-384 65-183 (285)
91 TIGR01464 hemE uroporphyrinoge 47.1 21 0.00046 37.8 3.9 74 274-363 184-262 (338)
92 TIGR02456 treS_nterm trehalose 47.0 54 0.0012 37.5 7.3 66 266-334 24-103 (539)
93 TIGR02104 pulA_typeI pullulana 47.0 45 0.00097 38.8 6.7 65 269-333 163-256 (605)
94 cd07941 DRE_TIM_LeuA3 Desulfob 46.8 1.3E+02 0.0029 31.4 9.5 103 274-403 82-194 (273)
95 PRK03906 mannonate dehydratase 46.7 29 0.00062 38.7 4.9 67 275-350 15-81 (385)
96 PF02065 Melibiase: Melibiase; 46.3 42 0.00091 37.5 6.1 80 267-350 55-145 (394)
97 PRK05222 5-methyltetrahydropte 46.1 50 0.0011 39.8 7.1 125 270-406 581-717 (758)
98 cd08592 PI-PLCc_gamma Catalyti 45.9 43 0.00094 35.2 5.8 65 264-331 24-99 (229)
99 PRK00957 methionine synthase; 45.8 83 0.0018 33.1 7.9 79 270-366 144-223 (305)
100 TIGR02631 xylA_Arthro xylose i 44.6 26 0.00057 38.7 4.2 53 270-327 32-88 (382)
101 cd03309 CmuC_like CmuC_like. P 44.1 20 0.00044 38.6 3.2 56 275-333 160-221 (321)
102 cd01299 Met_dep_hydrolase_A Me 43.6 68 0.0015 33.3 6.8 64 266-333 116-182 (342)
103 PF06336 Corona_5a: Coronaviru 43.2 7.3 0.00016 33.2 -0.2 20 491-510 2-21 (65)
104 PF01026 TatD_DNase: TatD rela 43.1 1.4E+02 0.0031 30.4 9.0 47 272-330 16-62 (255)
105 PLN02692 alpha-galactosidase 42.9 42 0.00091 38.0 5.5 58 268-327 71-141 (412)
106 PRK00115 hemE uroporphyrinogen 42.4 28 0.00062 37.2 4.0 58 272-335 188-249 (346)
107 PLN02433 uroporphyrinogen deca 42.1 25 0.00055 37.7 3.5 56 274-333 183-241 (345)
108 PF01791 DeoC: DeoC/LacD famil 42.1 19 0.00042 36.3 2.5 53 273-326 79-131 (236)
109 PLN00196 alpha-amylase; Provis 41.8 76 0.0016 35.8 7.3 64 268-334 42-119 (428)
110 PRK10933 trehalose-6-phosphate 41.8 66 0.0014 37.2 7.0 65 266-333 29-107 (551)
111 KOG0626 Beta-glucosidase, lact 41.5 78 0.0017 37.0 7.4 72 267-350 88-164 (524)
112 PRK15452 putative protease; Pr 41.3 27 0.00059 39.5 3.8 41 246-291 57-97 (443)
113 cd08597 PI-PLCc_PRIP_metazoa C 40.7 54 0.0012 35.0 5.6 65 263-330 23-98 (260)
114 TIGR02403 trehalose_treC alpha 40.4 75 0.0016 36.5 7.1 65 266-333 23-101 (543)
115 PRK12313 glycogen branching en 40.1 70 0.0015 37.4 6.9 62 266-333 166-246 (633)
116 PRK09993 C-lysozyme inhibitor; 40.0 20 0.00043 35.7 2.1 29 360-388 106-135 (153)
117 PRK13125 trpA tryptophan synth 39.7 90 0.0019 32.1 6.9 66 248-330 74-139 (244)
118 TIGR03699 mena_SCO4550 menaqui 39.3 26 0.00056 37.3 3.1 52 273-329 143-203 (340)
119 PF09184 PPP4R2: PPP4R2; Inte 38.4 7.5 0.00016 41.6 -1.1 29 644-672 96-125 (288)
120 PF04187 DUF399: Protein of un 38.1 23 0.0005 35.9 2.4 23 304-326 86-108 (213)
121 PLN02746 hydroxymethylglutaryl 38.0 2.2E+02 0.0047 31.6 9.8 105 273-403 124-240 (347)
122 COG3142 CutC Uncharacterized p 37.8 71 0.0015 34.0 5.8 76 247-333 50-128 (241)
123 cd00598 GH18_chitinase-like Th 37.7 1.1E+02 0.0025 29.3 6.9 80 247-330 63-149 (210)
124 PRK07094 biotin synthase; Prov 37.2 64 0.0014 33.9 5.5 52 273-329 129-187 (323)
125 PRK12595 bifunctional 3-deoxy- 37.2 90 0.002 34.5 6.8 69 250-325 119-187 (360)
126 KOG4246 Predicted DNA-binding 37.1 28 0.00061 42.6 3.1 47 557-603 993-1056(1194)
127 cd00958 DhnA Class I fructose- 36.9 49 0.0011 33.2 4.4 55 267-325 73-127 (235)
128 cd01310 TatD_DNAse TatD like p 36.9 2.5E+02 0.0055 27.5 9.3 47 271-330 16-62 (251)
129 TIGR03551 F420_cofH 7,8-dideme 36.7 32 0.0007 36.9 3.3 57 273-329 141-201 (343)
130 PRK08508 biotin synthase; Prov 36.1 42 0.00091 35.1 4.0 51 273-329 102-159 (279)
131 PRK03170 dihydrodipicolinate s 35.9 90 0.0019 32.6 6.3 114 246-384 68-186 (292)
132 cd00408 DHDPS-like Dihydrodipi 35.5 1.1E+02 0.0024 31.5 6.8 114 246-384 64-182 (281)
133 TIGR01415 trpB_rel pyridoxal-p 35.3 78 0.0017 35.5 6.1 68 248-328 82-149 (419)
134 PRK09505 malS alpha-amylase; R 35.2 81 0.0018 37.8 6.5 66 268-333 228-318 (683)
135 COG4130 Predicted sugar epimer 35.2 44 0.00096 35.5 3.9 125 242-391 90-226 (272)
136 TIGR00423 radical SAM domain p 35.1 40 0.00086 35.6 3.6 54 272-329 106-167 (309)
137 PLN02475 5-methyltetrahydropte 34.4 1.1E+02 0.0023 37.3 7.4 82 270-363 586-673 (766)
138 PF01717 Meth_synt_2: Cobalami 34.0 90 0.0019 33.0 6.0 86 270-367 154-245 (324)
139 PRK04302 triosephosphate isome 33.9 1.5E+02 0.0033 29.9 7.4 47 274-330 76-122 (223)
140 PRK07360 FO synthase subunit 2 33.1 67 0.0014 35.1 5.0 53 272-329 162-223 (371)
141 smart00518 AP2Ec AP endonuclea 32.7 1.1E+02 0.0024 30.9 6.3 55 270-330 10-64 (273)
142 TIGR03849 arch_ComA phosphosul 32.4 93 0.002 32.9 5.7 88 247-351 53-140 (237)
143 COG2352 Ppc Phosphoenolpyruvat 31.8 41 0.00088 41.2 3.4 67 266-339 532-612 (910)
144 PRK04326 methionine synthase; 31.7 81 0.0018 33.4 5.3 78 270-364 161-239 (330)
145 COG1082 IolE Sugar phosphate i 31.4 88 0.0019 31.2 5.2 54 269-329 14-67 (274)
146 COG2342 Predicted extracellula 31.4 82 0.0018 34.5 5.2 64 270-336 126-197 (300)
147 cd08625 PI-PLCc_beta3 Catalyti 31.1 94 0.002 33.2 5.6 68 263-331 23-101 (258)
148 COG2019 AdkA Archaeal adenylat 31.0 79 0.0017 32.6 4.7 89 315-414 74-168 (189)
149 PF05706 CDKN3: Cyclin-depende 30.6 33 0.00072 34.6 2.1 48 269-324 57-104 (168)
150 cd08629 PI-PLCc_delta1 Catalyt 30.3 1.1E+02 0.0024 32.8 5.9 64 264-330 24-98 (258)
151 PF01183 Glyco_hydro_25: Glyco 30.1 1.7E+02 0.0037 28.2 6.8 109 276-407 12-120 (181)
152 PF10255 Paf67: RNA polymerase 30.0 42 0.00091 37.9 2.9 33 305-354 6-39 (404)
153 cd06589 GH31 The enzymes of gl 29.6 1.3E+02 0.0028 31.1 6.2 73 266-353 20-99 (265)
154 cd08631 PI-PLCc_delta4 Catalyt 29.4 1.1E+02 0.0024 32.7 5.8 64 263-329 23-95 (258)
155 PLN02417 dihydrodipicolinate s 29.3 2.7E+02 0.0058 29.3 8.5 93 247-366 69-164 (280)
156 PF01902 ATP_bind_4: ATP-bindi 29.2 1E+02 0.0022 31.9 5.3 56 561-617 123-181 (218)
157 cd00019 AP2Ec AP endonuclease 29.1 1.4E+02 0.0031 30.4 6.4 53 270-324 10-63 (279)
158 PRK12677 xylose isomerase; Pro 29.1 1.2E+02 0.0025 33.8 6.1 52 271-327 32-87 (384)
159 cd08212 RuBisCO_large_I Ribulo 29.0 1E+02 0.0022 35.4 5.7 52 268-330 224-275 (450)
160 PF01136 Peptidase_U32: Peptid 28.9 51 0.0011 32.8 3.1 22 270-291 2-23 (233)
161 cd07947 DRE_TIM_Re_CS Clostrid 28.9 2.5E+02 0.0054 29.9 8.3 84 274-368 78-177 (279)
162 cd06598 GH31_transferase_CtsZ 28.8 1.4E+02 0.0031 31.8 6.5 66 266-331 20-94 (317)
163 PF12868 DUF3824: Domain of un 28.7 15 0.00031 35.8 -0.8 9 73-81 36-44 (137)
164 PF03786 UxuA: D-mannonate deh 28.4 56 0.0012 36.3 3.5 51 275-329 16-67 (351)
165 TIGR01371 met_syn_B12ind 5-met 28.4 1.5E+02 0.0033 35.8 7.3 82 270-362 575-661 (750)
166 PRK06256 biotin synthase; Vali 28.4 68 0.0015 34.0 4.0 51 273-329 152-209 (336)
167 COG0407 HemE Uroporphyrinogen- 28.2 98 0.0021 34.4 5.3 63 270-335 189-252 (352)
168 cd03174 DRE_TIM_metallolyase D 28.2 1.5E+02 0.0032 29.8 6.2 58 273-332 77-141 (265)
169 PF02679 ComA: (2R)-phospho-3- 28.1 74 0.0016 33.7 4.2 89 246-351 65-153 (244)
170 TIGR03700 mena_SCO4494 putativ 28.1 89 0.0019 33.8 4.9 53 272-329 149-210 (351)
171 cd00945 Aldolase_Class_I Class 28.1 1.5E+02 0.0033 27.8 5.9 59 268-328 63-121 (201)
172 PRK14511 maltooligosyl trehalo 28.0 2.1E+02 0.0045 35.6 8.4 66 268-334 18-96 (879)
173 TIGR02529 EutJ ethanolamine ut 27.8 1.5E+02 0.0031 30.5 6.1 63 254-328 25-96 (239)
174 cd02809 alpha_hydroxyacid_oxid 27.7 5.1E+02 0.011 27.4 10.3 130 268-407 127-287 (299)
175 PRK08673 3-deoxy-7-phosphohept 27.3 1.2E+02 0.0026 33.4 5.8 58 263-325 100-162 (335)
176 cd08594 PI-PLCc_eta Catalytic 27.3 1.3E+02 0.0029 31.7 5.8 66 264-332 24-100 (227)
177 TIGR02102 pullulan_Gpos pullul 27.3 1.2E+02 0.0026 38.5 6.3 65 268-332 478-580 (1111)
178 cd08593 PI-PLCc_delta Catalyti 26.9 1.4E+02 0.003 31.9 6.0 56 264-322 24-85 (257)
179 PTZ00445 p36-lilke protein; Pr 26.8 1.4E+02 0.0031 31.4 5.9 61 266-326 25-97 (219)
180 cd08560 GDPD_EcGlpQ_like_1 Gly 26.5 66 0.0014 35.5 3.6 49 274-326 249-297 (356)
181 cd06602 GH31_MGAM_SI_GAA This 26.4 5.9E+02 0.013 27.7 10.7 92 265-367 19-119 (339)
182 cd02876 GH18_SI-CLP Stabilin-1 26.0 1.2E+02 0.0026 32.0 5.3 45 272-318 97-141 (318)
183 cd08626 PI-PLCc_beta4 Catalyti 26.0 1.4E+02 0.003 32.1 5.7 67 263-330 23-100 (257)
184 PRK09121 5-methyltetrahydropte 25.9 1.1E+02 0.0024 33.2 5.2 125 270-407 156-300 (339)
185 PF04476 DUF556: Protein of un 25.8 93 0.002 33.0 4.4 44 276-323 137-183 (235)
186 TIGR03679 arCOG00187 arCOG0018 25.6 1.4E+02 0.0031 30.4 5.6 56 561-617 124-182 (218)
187 cd00950 DHDPS Dihydrodipicolin 25.4 1.5E+02 0.0033 30.7 5.8 102 267-384 79-185 (284)
188 COG0159 TrpA Tryptophan syntha 25.4 1.9E+02 0.0041 31.2 6.7 90 246-367 92-183 (265)
189 PRK00009 phosphoenolpyruvate c 25.0 62 0.0013 40.0 3.3 71 290-364 563-641 (911)
190 PRK12858 tagatose 1,6-diphosph 25.0 1.3E+02 0.0028 33.2 5.5 61 275-335 111-171 (340)
191 PLN02564 6-phosphofructokinase 24.5 3.4E+02 0.0073 31.7 8.8 87 271-406 164-250 (484)
192 PF05226 CHASE2: CHASE2 domain 24.5 6.3E+02 0.014 26.3 10.1 58 268-330 62-119 (310)
193 TIGR02884 spore_pdaA delta-lac 24.3 1.4E+02 0.003 30.3 5.2 81 562-654 142-223 (224)
194 COG1312 UxuA D-mannonate dehyd 24.2 82 0.0018 35.2 3.7 64 275-347 15-78 (362)
195 CHL00040 rbcL ribulose-1,5-bis 23.7 1.4E+02 0.0031 34.5 5.7 54 268-331 246-299 (475)
196 smart00729 Elp3 Elongator prot 23.4 3.4E+02 0.0074 25.0 7.3 57 268-330 134-190 (216)
197 PRK14706 glycogen branching en 23.3 1.7E+02 0.0038 34.7 6.4 61 265-330 162-240 (639)
198 PRK15108 biotin synthase; Prov 23.2 1.1E+02 0.0024 33.3 4.5 45 273-323 136-187 (345)
199 TIGR02401 trehalose_TreY malto 23.1 2.6E+02 0.0056 34.6 7.9 66 268-334 14-92 (825)
200 PLN03231 putative alpha-galact 23.0 1.2E+02 0.0026 33.8 4.9 57 277-333 29-114 (357)
201 PRK02227 hypothetical protein; 22.9 1.1E+02 0.0023 32.6 4.2 46 274-323 135-183 (238)
202 cd08595 PI-PLCc_zeta Catalytic 22.8 69 0.0015 34.2 2.9 31 263-294 23-53 (257)
203 PLN02447 1,4-alpha-glucan-bran 22.7 1.5E+03 0.033 28.0 19.1 62 266-332 246-326 (758)
204 PF02126 PTE: Phosphotriestera 22.7 1.9E+02 0.0041 31.4 6.1 64 268-350 36-99 (308)
205 TIGR02351 thiH thiazole biosyn 22.5 2.6E+02 0.0057 30.6 7.2 45 273-322 162-216 (366)
206 TIGR03326 rubisco_III ribulose 22.4 1.4E+02 0.0031 33.8 5.3 53 268-330 222-274 (412)
207 PF03009 GDPD: Glycerophosphor 22.4 84 0.0018 30.3 3.1 20 275-294 15-34 (256)
208 smart00481 POLIIIAc DNA polyme 22.2 3.7E+02 0.008 21.8 6.4 45 271-326 16-60 (67)
209 PRK15108 biotin synthase; Prov 22.0 2.3E+02 0.005 30.9 6.7 51 268-323 77-127 (345)
210 PF04854 DUF624: Protein of un 21.8 75 0.0016 26.8 2.4 24 383-406 37-60 (77)
211 TIGR00010 hydrolase, TatD fami 21.8 2.2E+02 0.0048 27.9 6.0 46 272-330 17-62 (252)
212 cd08630 PI-PLCc_delta3 Catalyt 21.6 2E+02 0.0042 31.0 5.8 56 264-322 24-85 (258)
213 TIGR00423 radical SAM domain p 21.5 2.5E+02 0.0053 29.8 6.6 51 268-325 37-87 (309)
214 PRK06233 hypothetical protein; 21.4 1.9E+02 0.0042 31.8 6.0 136 270-406 171-329 (372)
215 PRK08645 bifunctional homocyst 21.3 4.4E+02 0.0096 31.0 9.1 73 271-354 476-555 (612)
216 smart00854 PGA_cap Bacterial c 21.2 1.7E+02 0.0037 29.6 5.2 57 268-331 158-214 (239)
217 PRK05402 glycogen branching en 20.9 2.2E+02 0.0048 34.1 6.7 64 264-332 259-340 (726)
218 cd08591 PI-PLCc_beta Catalytic 20.9 1.8E+02 0.0038 31.3 5.3 67 263-330 23-100 (257)
219 PLN02784 alpha-amylase 20.7 2E+02 0.0043 35.8 6.3 63 269-334 520-596 (894)
220 cd06413 GH25_muramidase_1 Unch 20.7 2.9E+02 0.0062 27.2 6.5 107 275-407 16-124 (191)
221 cd08562 GDPD_EcUgpQ_like Glyce 20.6 1.1E+02 0.0025 30.0 3.7 30 247-290 198-227 (229)
222 PRK08445 hypothetical protein; 20.6 1.5E+02 0.0032 32.4 4.8 54 272-329 143-204 (348)
223 cd06565 GH20_GcnA-like Glycosy 20.5 8.5E+02 0.018 26.0 10.3 131 265-404 12-176 (301)
224 TIGR03822 AblA_like_2 lysine-2 20.5 5.4E+02 0.012 27.7 9.0 109 274-407 188-299 (321)
225 cd06604 GH31_glucosidase_II_Ma 20.4 4.6E+02 0.01 28.2 8.5 88 265-366 19-113 (339)
226 PF05378 Hydant_A_N: Hydantoin 20.4 2E+02 0.0043 28.5 5.3 45 268-320 132-176 (176)
227 cd06545 GH18_3CO4_chitinase Th 20.3 2.1E+02 0.0045 29.3 5.6 39 273-319 89-127 (253)
228 PRK09240 thiH thiamine biosynt 20.2 2.8E+02 0.006 30.5 6.9 61 273-351 163-234 (371)
229 cd08577 PI-PLCc_GDPD_SF_unchar 20.2 83 0.0018 32.5 2.8 44 276-320 15-68 (228)
No 1
>PLN02705 beta-amylase
Probab=100.00 E-value=5.3e-262 Score=2092.87 Aligned_cols=632 Identities=80% Similarity=1.323 Sum_probs=612.5
Q ss_pred CCCCCCCCCCcchhhhhHHHHHHhhcCC----CCCCCCCCCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCC
Q 005811 27 TQSHSRRPRGFAATAAAAAAAAAANNNS----NSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFP 102 (676)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~e~e~~~~rer~rrai~~~i~~glr~~g~~~ 102 (676)
+|||+|||||||||||||++++..+++. ..+|++||+|+++|+||+||||||+|||||||||+|||+|||+||||+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~rer~rrai~~ki~aglr~~g~~~ 113 (681)
T PLN02705 34 NQPQSRRPRGFAATAAAAAIAPTENDVNNGNISSGGGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFP 113 (681)
T ss_pred CCCccCCCcchhhhhcccccCCCcccccCccccCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4599999999999999998877665544 455666667788999999999999999999999999999999999999
Q ss_pred CCcccChHHHHHHHHHHhCceECCCCCceeccCcccCCccchhhhhhhhcccccccccccccCccc---ccccccccccc
Q 005811 103 LPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS---VKNCSVKASVE 179 (676)
Q Consensus 103 lp~~~d~n~v~~al~~~ag~~v~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 179 (676)
||+|||+||||||||+||||+||+|||||| + +++|+++|+|+|+|||||++ |++|+.+...+
T Consensus 114 lp~~~d~n~vl~al~~eagw~v~~dg~~yr-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (681)
T PLN02705 114 LPARADMNDVLAALAREAGWTVEADGTTYR-----------Q----SPQPSHVGSFPVRSVESPLSSSTLKNCAKAAIES 178 (681)
T ss_pred CCcccchHHHHHHHHHhcCcEEcCCCCccc-----------C----CCCCcccccccccCccCcchhhhHHHhhhhhhcc
Confidence 999999999999999999999999999999 4 78899999999999999997 99999999999
Q ss_pred cCCccccccCCCCCCCccccccccCC-CCCCCCcCCCCCCccchhhhhhhhhhhcccCCCCcCcCCCCCCccEEEEeece
Q 005811 180 CQPSVLRIDESLSPASFDSVVIPERD-SRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANH 258 (676)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLd 258 (676)
||+|+|||||||||.|||||||+|++ +++|+|+ ++||| +|++|++++|++++++++.++++|+.+++||||||||||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd 256 (681)
T PLN02705 179 QQHSVLRIDESLSPVSLDSVVIAESDHPGNGRYT-STSPI-TSVGCLEADQLIQDVHSGEHENDFTETFYVPVYVMLAVG 256 (681)
T ss_pred cccchhccccccCcccccceeeeccccccccccc-ccCcc-ccccccchhhhhhccCCCCCccCcCCCCceeEEEEeecc
Confidence 99999999999999999999999999 8999999 99999 999999999999999999999999999999999999999
Q ss_pred eecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCC
Q 005811 259 VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (676)
Q Consensus 259 ~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD 338 (676)
+|+++|+|+|+++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++|||||||||||||||||||
T Consensus 257 ~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD 336 (681)
T PLN02705 257 IINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASG 336 (681)
T ss_pred eeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccceEEEEecc
Q 005811 339 DAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGL 418 (676)
Q Consensus 339 ~~~IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI~eI~VGL 418 (676)
+|+||||+||+++|++|||||||||+|+||+||||||+|++|||+||||||||+|||+|||++|++||+++||+||+|||
T Consensus 337 ~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGL 416 (681)
T PLN02705 337 NVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGL 416 (681)
T ss_pred cccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred cCCcccCCCCCCCCCCCcCCccceehhchHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCcccccCCcccccccc
Q 005811 419 GPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGR 498 (676)
Q Consensus 419 GPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~G~p~WG~gP~nAg~YNs~P~~t~FF~~gG~w~S~YGk 498 (676)
||||||||||||++.||+||||||||||||||+++||++|+++|||+||.||||||+||++|++|+||+++|+|+|+|||
T Consensus 417 GP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~Lk~aA~a~GhpeWG~gP~dAg~YN~~P~~tgFF~~~G~w~S~YGk 496 (681)
T PLN02705 417 GASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQNLRKAAKSRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYYGR 496 (681)
T ss_pred CCCccccCCCCcccCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCCCCccccCCCCCCCCCCCCCCCcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred chHHHhHHHHHhHHHHHHHHHHHhcCCCceeeEeceeeeccCCCCChhhhhccccCCCCCCChHHHHHHHhhcCcEEEEe
Q 005811 499 FFLNWYAQTLIDHADNVLSLASLAFEETKIIVKVPGVYWWYKTASHAAELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFV 578 (676)
Q Consensus 499 FFL~WYS~~Li~HGDrVLs~A~~vF~g~~l~aKV~GIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FT 578 (676)
|||+|||++||+||||||++|+.+|++++|++|||||||||+|+||||||||||||+++||||.+|++|||||+|+|+||
T Consensus 497 FFLsWYS~~Ll~HGDrVLs~A~~vF~~~~LsaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FT 576 (681)
T PLN02705 497 FFLHWYSQLLIDHADNVLSLANLAFEETKIIVKIPAVYWWYKTASHAAELTAGYYNPTNQDGYSPVFETLKKHSVTVKFV 576 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCCchhhhccccccCCCcccHHHHHHHHHHcCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee-cCCCC--CCCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCCCCCCCcccceEeecCCccc
Q 005811 579 CA-VPSLQ--DQEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRNDPDRRHFSFFMYQQPSSLL 655 (676)
Q Consensus 579 Cl-M~d~e--~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~~a~~~~~~~~~~~~~FTyLRm~~~l 655 (676)
|+ |.+.+ +.+++|+||+||+||+++||++||+|+|||||++||.++|+||++|++++++|+..+|++||||||++.|
T Consensus 577 C~eMe~~d~~~~~a~s~PE~LV~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~na~~~~~~~~~~~~~FTYlRm~~~l 656 (681)
T PLN02705 577 CSGLQMSPNENDEALADPEGLSWQVLNSAWDRGLTVAGENAITCYDREGCMRLIEIAKPRNHPDHYHFSFFVYQQPSPLV 656 (681)
T ss_pred eccccccCCCCCccCCCHHHHHHHHHHHHHHcCCceeecccccccCHHHHHHHHHHhcccCCCcccceeeeEEecCchHh
Confidence 99 77654 4789999999999999999999999999999999999999999999999888888889999999999999
Q ss_pred CCCCCcchHHHHHHHhcCCC
Q 005811 656 QGTICFSDLGYVIKCMHGKK 675 (676)
Q Consensus 656 f~~~n~~~F~~FVr~M~~~~ 675 (676)
|+++||++|+.|||+||++.
T Consensus 657 f~~~n~~~F~~FVr~M~~~~ 676 (681)
T PLN02705 657 QGTTCFPELDYFIKCMHGDI 676 (681)
T ss_pred cCcccHHHHHHHHHHhcccc
Confidence 99999999999999999875
No 2
>PLN02905 beta-amylase
Probab=100.00 E-value=6.2e-245 Score=1963.80 Aligned_cols=615 Identities=56% Similarity=0.989 Sum_probs=586.8
Q ss_pred hhcCCCCCCCCCCCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCCCCcccChHHHHHHHHHHhCceECCCCC
Q 005811 50 ANNNSNSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGT 129 (676)
Q Consensus 50 ~~~~~~~~~~~~~~g~~~~~~~~e~e~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~v~~al~~~ag~~v~~dg~ 129 (676)
+..+++|||+|+||+.++....|||||||+|||||||||+|||+|||+||||+||+|||+||||||||+||||+||+|||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~v~~~l~~eag~~v~~dg~ 142 (702)
T PLN02905 63 QQSIQEQVGTPGGGGSRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGT 142 (702)
T ss_pred HHHHHHhcCCCCCCccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccchHHHHHHHHHhcCcEEcCCCC
Confidence 44567999999998876655569999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCcccCCccchhhhhhhhcccccccccccccCccc--------------ccccccccccccCCccccccCCCCCCC
Q 005811 130 TYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS--------------VKNCSVKASVECQPSVLRIDESLSPAS 195 (676)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (676)
|||...|+..... ..++.....++|+++|+|||++ |++|++++++.+|+|+ +|++|+|+|
T Consensus 143 ~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~d~~~~~~~ 216 (702)
T PLN02905 143 TFPSRSQGTRPAG----GTSAVAATSSSSHLVSQQTPPPSLRGVSSGYRSSVEYNACRMKGVFVPASSP--YDVSPSQSS 216 (702)
T ss_pred cccccCCCCCCCC----CcccccccccccccccccCCcchhcccccccccccccchhhhccccccCCCc--cccccCCCC
Confidence 9996443322111 1134445568899999999883 9999999999999999 799999999
Q ss_pred ccccccccCCCCCCCCcCCCCCCccchhhhhhhhhhhcccCCCCcCcCCCCCCccEEEEeeceeecCCCcccCHHHHHHH
Q 005811 196 FDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQE 275 (676)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~~ 275 (676)
+||||++|++++|++| +||++|++|++++|++ |+++..++.+++.+++||||||||||+|+.+|+|+|+++|+++
T Consensus 217 ~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~ 291 (702)
T PLN02905 217 ELVVVMGDRGSQNENH----GLIGGSVDAINSKQIL-DIPPKLTERDFAGTPYVPVYVMLPLGVINMKCELADPDGLLKQ 291 (702)
T ss_pred cceeEeeccccccccc----CCccCcccccchhhhh-hhhcccccccccCCCceeEEEEeecceecCCCcccCHHHHHHH
Confidence 9999999999999999 5888999999999888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccC
Q 005811 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGN 355 (676)
Q Consensus 276 L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~n 355 (676)
|++||++|||||||||||||||+++|++|||+||++||+|||++|||||||||||||||||||+|+||||+||++++++|
T Consensus 292 L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~n 371 (702)
T PLN02905 292 LRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSN 371 (702)
T ss_pred HHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccceEEEEecccCCcccCCCCCCCCCCC
Q 005811 356 QDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGW 435 (676)
Q Consensus 356 pDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI~eI~VGLGPaGELRYPSYp~~~GW 435 (676)
||||||||+|+||+||||||+|++|||+||||||||+|||+|||++|++||+++||+||+|||||||||||||||++.||
T Consensus 372 PDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaGELRYPSYp~s~GW 451 (702)
T PLN02905 372 PDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCGELRYPSCPVKHGW 451 (702)
T ss_pred CCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCccccCCCCcCcCCC
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cCCccceehhchHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCcccccCCccccccccchHHHhHHHHHhHHHHH
Q 005811 436 RYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGRFFLNWYAQTLIDHADNV 515 (676)
Q Consensus 436 ~yPGiGEFQCYDkymlasLk~aA~~~G~p~WG~gP~nAg~YNs~P~~t~FF~~gG~w~S~YGkFFL~WYS~~Li~HGDrV 515 (676)
+||||||||||||||+++||++|+++|||+||.||||||+||++|++|+||+++|+|+|+||||||+|||++||+|||||
T Consensus 452 ~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~gP~dAG~YN~~P~~TgFF~~~Gsw~S~YGkFFLsWYS~~Ll~HGDrV 531 (702)
T PLN02905 452 RYPGIGEFQCYDQYLLKSLRKAAEARGHLFWARGPDNTGSYNSQPHETGFFCDGGDYDGYYGRFFLNWYSQVLVDHGDRV 531 (702)
T ss_pred CCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeeEeceeeeccCCCCChhhhhccccCCCCCCChHHHHHHHhhcCcEEEEeee-cCCCCCC----CCC
Q 005811 516 LSLASLAFEETKIIVKVPGVYWWYKTASHAAELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFVCA-VPSLQDQ----EAL 590 (676)
Q Consensus 516 Ls~A~~vF~g~~l~aKV~GIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FTCl-M~d~e~~----~a~ 590 (676)
|++|+.+|++++|+||||||||||+|+||||||||||||+++||||.||++|||||+|+|+|||| |+|.+++ +++
T Consensus 532 Ls~A~~vF~g~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ 611 (702)
T PLN02905 532 LSLAKLAFEGTCIAAKLPGVHWWYKTASHAAELTAGFYNPCNRDGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEAL 611 (702)
T ss_pred HHHHHHhcCCCeEEEEeccccccCCCCCchHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecccccCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9998763 789
Q ss_pred CChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCCCCCCCcccceEeecCCcccCCCCCcchHHHHHHH
Q 005811 591 ADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRNDPDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKC 670 (676)
Q Consensus 591 s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~~a~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~ 670 (676)
|+||+||+||+++||++||+|+|||||++||.++|+||+++++++++|+..+|++||||||++.||+++||++|++|||+
T Consensus 612 ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~na~~~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~ 691 (702)
T PLN02905 612 GDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILENAKPLNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKR 691 (702)
T ss_pred CCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhhcccCCccCceeeeEEecCchhhcCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887777789999999999999999999999999999
Q ss_pred hcCCC
Q 005811 671 MHGKK 675 (676)
Q Consensus 671 M~~~~ 675 (676)
||+++
T Consensus 692 M~~~~ 696 (702)
T PLN02905 692 MHGEA 696 (702)
T ss_pred hcccc
Confidence 99864
No 3
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=1.7e-191 Score=1533.70 Aligned_cols=435 Identities=39% Similarity=0.741 Sum_probs=419.4
Q ss_pred cCcCCCCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHc
Q 005811 240 EDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (676)
Q Consensus 240 ~~~~~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~ 319 (676)
...-...++||||||||||+|+++|+|+|+++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++
T Consensus 97 ~~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~ 176 (573)
T PLN00197 97 GGTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRH 176 (573)
T ss_pred ccccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHc
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeeccCCCCCCCccccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHH
Q 005811 320 NLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFR 399 (676)
Q Consensus 320 GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr 399 (676)
|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||||||+|||+|||
T Consensus 177 GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr 256 (573)
T PLN00197 177 GLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFR 256 (573)
T ss_pred CCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccceEEEEecccCCcccCCCCCCCCCC-CcCCccceehhchHHHHHHHHHHHHHhCCcccC-CCCCCCCCCC
Q 005811 400 TEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWA-RGPDNAGQYN 477 (676)
Q Consensus 400 ~~F~~~l~~~vI~eI~VGLGPaGELRYPSYp~~~G-W~yPGiGEFQCYDkymlasLk~aA~~~G~p~WG-~gP~nAg~YN 477 (676)
++|++||+ ++|+||+|||||||||||||||+++| |+||||||||||||||+++||++|+++|||+|| +||||||+||
T Consensus 257 ~~F~~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn 335 (573)
T PLN00197 257 DNFKHLLG-DTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYN 335 (573)
T ss_pred HHHHHHhc-CceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccC
Confidence 99999998 59999999999999999999999988 999999999999999999999999999999999 4899999999
Q ss_pred CCCCCCcccc-cCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCC--CceeeEeceeeeccCCCCChhhhhccccC
Q 005811 478 SLPHETGFFC-ERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEE--TKIIVKVPGVYWWYKTASHAAELTAGYYN 554 (676)
Q Consensus 478 s~P~~t~FF~-~gG~w~S~YGkFFL~WYS~~Li~HGDrVLs~A~~vF~g--~~l~aKV~GIHWWY~t~SHAAELTAGYYN 554 (676)
+.|++|+||+ +||+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+||||||||||||
T Consensus 336 ~~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYN 415 (573)
T PLN00197 336 NWPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYN 415 (573)
T ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhcccccc
Confidence 9999999999 57899999999999999999999999999999999985 68999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHhhcCcEEEEeee-cCCCCC-CCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhc
Q 005811 555 PSNQDGYAPVFEVLKKHSVTMKFVCA-VPSLQD-QEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMA 632 (676)
Q Consensus 555 t~~rDGY~pIa~mf~rh~v~l~FTCl-M~d~e~-~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~~a 632 (676)
+++||||+||++|||||+|+|+|||+ |+|.++ ++++|+||+||+||+++||++||+|+|||||+|||.++|+||++++
T Consensus 416 t~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~~~ 495 (573)
T PLN00197 416 TRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQAS 495 (573)
T ss_pred CCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHHhc
Confidence 99999999999999999999999999 999987 6799999999999999999999999999999999999999999998
Q ss_pred CCCCC--CCCCcccceEeecCCcccCCCCCcchHHHHHHHhcCCC
Q 005811 633 KPRND--PDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKCMHGKK 675 (676)
Q Consensus 633 ~~~~~--~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~ 675 (676)
+.+.+ |..++|++||||||++.||+++||++|++|||+||++.
T Consensus 496 ~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~ 540 (573)
T PLN00197 496 SLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGK 540 (573)
T ss_pred ccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCC
Confidence 76542 34467999999999999999999999999999999864
No 4
>PLN02803 beta-amylase
Probab=100.00 E-value=5.3e-191 Score=1526.44 Aligned_cols=428 Identities=42% Similarity=0.796 Sum_probs=416.4
Q ss_pred CCCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 005811 244 TGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (676)
Q Consensus 244 ~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 323 (676)
...++||||||||||+|+++|+|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++||||
T Consensus 81 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 81 KNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred ccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccCCCCCCCccccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHh
Q 005811 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFD 403 (676)
Q Consensus 324 qvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~ 403 (676)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|+
T Consensus 161 q~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 240 (548)
T PLN02803 161 QVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK 240 (548)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccceEEEEecccCCcccCCCCCCCCCC-CcCCccceehhchHHHHHHHHHHHHHhCCcccCC-CCCCCCCCCCCCC
Q 005811 404 DLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWAR-GPDNAGQYNSLPH 481 (676)
Q Consensus 404 ~~l~~~vI~eI~VGLGPaGELRYPSYp~~~G-W~yPGiGEFQCYDkymlasLk~aA~~~G~p~WG~-gP~nAg~YNs~P~ 481 (676)
+|++ +||+||+|||||||||||||||+++| |+||||||||||||||+++||++|+++|||+||+ ||||||+||++|+
T Consensus 241 ~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~ 319 (548)
T PLN02803 241 DYLG-GVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPE 319 (548)
T ss_pred HHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCC
Confidence 9998 69999999999999999999999988 9999999999999999999999999999999995 8999999999999
Q ss_pred CCcccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCC--ceeeEeceeeeccCCCCChhhhhccccCCCCCC
Q 005811 482 ETGFFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEET--KIIVKVPGVYWWYKTASHAAELTAGYYNPSNQD 559 (676)
Q Consensus 482 ~t~FF~~gG~w~S~YGkFFL~WYS~~Li~HGDrVLs~A~~vF~g~--~l~aKV~GIHWWY~t~SHAAELTAGYYNt~~rD 559 (676)
+|+||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||||||+|+||||||||||||+++||
T Consensus 320 ~t~FF~~~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rd 399 (548)
T PLN02803 320 ETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHD 399 (548)
T ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcc
Confidence 999999889999999999999999999999999999999999865 899999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCcEEEEeee-cCCCCC-CCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCCC
Q 005811 560 GYAPVFEVLKKHSVTMKFVCA-VPSLQD-QEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRND 637 (676)
Q Consensus 560 GY~pIa~mf~rh~v~l~FTCl-M~d~e~-~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~~a~~~~~ 637 (676)
||.||++|||||+|+|+|||| |+|.++ ++++|+||+||+||+++||++||+|+|||||++||.++|+||+++++++..
T Consensus 400 GY~~Ia~mf~rh~~~l~FTClEM~D~eqp~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~~~~ 479 (548)
T PLN02803 400 GYLPIARMFSKHGVVLNFTCMEMRDGEQPEHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSDSG 479 (548)
T ss_pred cHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhccccc
Confidence 999999999999999999999 999987 679999999999999999999999999999999999999999999986432
Q ss_pred CCCCcccceEeecCCcccCCCCCcchHHHHHHHhcCCC
Q 005811 638 PDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKCMHGKK 675 (676)
Q Consensus 638 ~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~ 675 (676)
.+|++||||||++.||+++||++|++|||+||++.
T Consensus 480 ---~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~ 514 (548)
T PLN02803 480 ---NGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGG 514 (548)
T ss_pred ---CceeeeEEecCChHHcChhhHHHHHHHHHHhcCcc
Confidence 36999999999999999999999999999999853
No 5
>PLN02801 beta-amylase
Probab=100.00 E-value=3e-191 Score=1522.82 Aligned_cols=430 Identities=44% Similarity=0.846 Sum_probs=418.1
Q ss_pred CCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 005811 245 GTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (676)
Q Consensus 245 ~~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlq 324 (676)
..++||||||||||+|+++|+|+|+++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++|||||
T Consensus 12 ~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 12 LANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred cCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCCCCccccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhh
Q 005811 325 VVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (676)
Q Consensus 325 vVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~ 404 (676)
||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++
T Consensus 92 ~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~ 171 (517)
T PLN02801 92 AIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD 171 (517)
T ss_pred EEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccceEEEEecccCCcccCCCCCCCCCCCcCCccceehhchHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCc
Q 005811 405 LFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETG 484 (676)
Q Consensus 405 ~l~~~vI~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~G~p~WG~gP~nAg~YNs~P~~t~ 484 (676)
|++++||+||+|||||||||||||||+++||+||||||||||||||+++||++|+++|||+||. |||||+||++|++|+
T Consensus 172 ~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~-P~dag~Yn~~P~~t~ 250 (517)
T PLN02801 172 FLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL-PDDAGEYNDTPEDTG 250 (517)
T ss_pred hccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC-CCCCCcccCCCCCCC
Confidence 9987899999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred ccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCC--ceeeEeceeeeccCCCCChhhhhccccCCCCCCChH
Q 005811 485 FFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEET--KIIVKVPGVYWWYKTASHAAELTAGYYNPSNQDGYA 562 (676)
Q Consensus 485 FF~~gG~w~S~YGkFFL~WYS~~Li~HGDrVLs~A~~vF~g~--~l~aKV~GIHWWY~t~SHAAELTAGYYNt~~rDGY~ 562 (676)
||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||||||+|+||||||||||||+++||||.
T Consensus 251 FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~~rDGY~ 330 (517)
T PLN02801 251 FFKSNGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLKGRDGYR 330 (517)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCCCccchH
Confidence 999999999999999999999999999999999999999875 899999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEeee-cCCCCC-CCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCC----
Q 005811 563 PVFEVLKKHSVTMKFVCA-VPSLQD-QEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRN---- 636 (676)
Q Consensus 563 pIa~mf~rh~v~l~FTCl-M~d~e~-~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~~a~~~~---- 636 (676)
|||+|||||+|+|+|||| |+|.++ ++++|+||+||+||+++||++||+|+|||||+|||.++|+||++|++++.
T Consensus 331 pIa~m~~rh~~~l~FTClEM~D~eq~~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~~~~~~~ 410 (517)
T PLN02801 331 PIARMLSRHYGILNFTCLEMRDTEQPAEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARPNGVNKD 410 (517)
T ss_pred HHHHHHHHcCCeEEEeecccccCCCCcccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhhccCCcc
Confidence 999999999999999999 999987 77999999999999999999999999999999999999999999998753
Q ss_pred CCCCCcccceEeecCCcccCCCCCcchHHHHHHHhcCCC
Q 005811 637 DPDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKCMHGKK 675 (676)
Q Consensus 637 ~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~ 675 (676)
+++..+|++||||||++.||+++||++|++|||+||++.
T Consensus 411 g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~ 449 (517)
T PLN02801 411 GKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQ 449 (517)
T ss_pred cccccceeeEEEecCchHhcCcchHHHHHHHHHHhcccc
Confidence 223457999999999999999999999999999999864
No 6
>PLN02161 beta-amylase
Probab=100.00 E-value=2e-188 Score=1500.57 Aligned_cols=430 Identities=36% Similarity=0.699 Sum_probs=414.4
Q ss_pred cCCCCCCccEEEEeeceeecCCC----cccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHH
Q 005811 242 DFTGTPYIPVYVMLANHVINNFC----QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIR 317 (676)
Q Consensus 242 ~~~~~~~vpVyVMLPLd~V~~~~----~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr 317 (676)
.-...++||||||||||+|+.++ +|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||
T Consensus 85 ~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr 164 (531)
T PLN02161 85 VSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLIS 164 (531)
T ss_pred ccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHH
Confidence 34457899999999999999664 79999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHH
Q 005811 318 EFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRS 397 (676)
Q Consensus 318 ~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrS 397 (676)
++|||||||||||||||||||+|+||||+||+++|++|||||||||+|+||+||||||||++|||+||||||||+|||+|
T Consensus 165 ~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~S 244 (531)
T PLN02161 165 EAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLS 244 (531)
T ss_pred HcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccceEEEEecccCCcccCCCCCCCCCC-CcCCccceehhchHHHHHHHHHHHHHhCCcccC-CCCCCCCC
Q 005811 398 FRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWA-RGPDNAGQ 475 (676)
Q Consensus 398 Fr~~F~~~l~~~vI~eI~VGLGPaGELRYPSYp~~~G-W~yPGiGEFQCYDkymlasLk~aA~~~G~p~WG-~gP~nAg~ 475 (676)
||++|++|++ +||+||+|||||||||||||||+++| |+||||||||||||||+++||++|+++|||+|| .||||||.
T Consensus 245 Fr~~F~~~~~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~ 323 (531)
T PLN02161 245 FSTKFEPYIG-NVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGC 323 (531)
T ss_pred HHHHHHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCcc
Confidence 9999999997 69999999999999999999999877 999999999999999999999999999999999 58999999
Q ss_pred CCCCCCCCccccc-CCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCC--------CceeeEeceeeeccCCCCChh
Q 005811 476 YNSLPHETGFFCE-RGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEE--------TKIIVKVPGVYWWYKTASHAA 546 (676)
Q Consensus 476 YNs~P~~t~FF~~-gG~w~S~YGkFFL~WYS~~Li~HGDrVLs~A~~vF~g--------~~l~aKV~GIHWWY~t~SHAA 546 (676)
||+.|++|+||++ +|+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+||||
T Consensus 324 Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHaA 403 (531)
T PLN02161 324 YNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHPA 403 (531)
T ss_pred cCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCchh
Confidence 9999999999996 5789999999999999999999999999999999964 789999999999999999999
Q ss_pred hhhccccCCCCCCChHHHHHHHhhcCcEEEEeee-cCCCCC-CCCCCChHHHHHHHHHHHHhcCCccccccccccCChhh
Q 005811 547 ELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFVCA-VPSLQD-QEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREG 624 (676)
Q Consensus 547 ELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FTCl-M~d~e~-~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~D~~a 624 (676)
||||||||+++||||.||++|||||+|+|+|||| |+|.|+ +++.|+||+||+||+++||++||+|+|||||+|||..+
T Consensus 404 ElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~~~ 483 (531)
T PLN02161 404 ELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPEKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDEMG 483 (531)
T ss_pred hhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCCccccCCHHHHHHHHHHHHHHcCCceeecccccccChhH
Confidence 9999999999999999999999999999999999 999987 77899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcccceEeecCCcccCCCCCcchHHHHHHHhcCCC
Q 005811 625 CMRVVEMAKPRNDPDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKCMHGKK 675 (676)
Q Consensus 625 y~qI~~~a~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~ 675 (676)
|+||+++++.. +..+|.+||||||++.||+++||++|++|||+||++.
T Consensus 484 ~~qi~~n~~~~---~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~~ 531 (531)
T PLN02161 484 LRQIRENCVQP---NGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSADM 531 (531)
T ss_pred HHHHHHHhcCC---CCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCCC
Confidence 99999999632 2457999999999999999999999999999999874
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=1.4e-168 Score=1325.89 Aligned_cols=389 Identities=52% Similarity=0.956 Sum_probs=334.1
Q ss_pred EEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeec
Q 005811 252 YVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 252 yVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
|||||||+|+++++++ +|+++|++||++|||||||||||||||+++|++|||++|++||+|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988875 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccce
Q 005811 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLI 411 (676)
Q Consensus 332 CGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI 411 (676)
|||||||+|+||||+||++++++| |||||||+|+||+|||| |||+||| ||+|+|||+|||++|++|+ ++|
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~--~~I 147 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL--STI 147 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH--TGE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 599
Q ss_pred EEEEecccCCcccCCCCCCCCCCCcCCccceehhchHHHHHHHHHHHH------HhCCcccC-CCCCCCCCCCCCCCCCc
Q 005811 412 CAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAK------LRGHSFWA-RGPDNAGQYNSLPHETG 484 (676)
Q Consensus 412 ~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~------~~G~p~WG-~gP~nAg~YNs~P~~t~ 484 (676)
+||+|||||||||||||||+++||+||||||||||||||+++||++|+ .++||+|| .+|+|+ ||++|++|+
T Consensus 148 ~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 148 TEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred eEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999 55689999 589999 999999999
Q ss_pred ccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCC---ceeeEeceeeeccC--CCCChhhhhccccCCCCCC
Q 005811 485 FFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEET---KIIVKVPGVYWWYK--TASHAAELTAGYYNPSNQD 559 (676)
Q Consensus 485 FF~~gG~w~S~YGkFFL~WYS~~Li~HGDrVLs~A~~vF~g~---~l~aKV~GIHWWY~--t~SHAAELTAGYYNt~~rD 559 (676)
||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||||||+ |+||||||||||||
T Consensus 226 fF~~~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN----- 300 (402)
T PF01373_consen 226 FFRDNGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN----- 300 (402)
T ss_dssp TTSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S------
T ss_pred CcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC-----
Confidence 999999999999999999999999999999999999999987 89999999999999 88999999999999
Q ss_pred ChHHHHHHHhhcCcEEEEeee-cCCCCCCCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCCCC
Q 005811 560 GYAPVFEVLKKHSVTMKFVCA-VPSLQDQEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRNDP 638 (676)
Q Consensus 560 GY~pIa~mf~rh~v~l~FTCl-M~d~e~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~~a~~~~~~ 638 (676)
|+||++|||||+|+|+|||| |+|.++.+..|+||+||+||+++|+++||+|+|||||++||+++|+||+++++.
T Consensus 301 -Y~~Ia~mf~kh~~~l~fTClEM~d~~~~p~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~---- 375 (402)
T PF01373_consen 301 -YSPIARMFKKHGVTLNFTCLEMRDSEEQPEYSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKG---- 375 (402)
T ss_dssp -SHHHHHHHHTTT-EEEES-TT--GGSGSCGGG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTH----
T ss_pred -HHHHHHHHHHcCcEEEEEeccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhc----
Confidence 99999999999999999999 999966666789999999999999999999999999999999999999999974
Q ss_pred CCCcccceEeecCCcccCCCCCcchHHHH
Q 005811 639 DRRHFSFFMYQQPSSLLQGTICFSDLGYV 667 (676)
Q Consensus 639 ~~~~~~~FTyLRm~~~lf~~~n~~~F~~F 667 (676)
.++.+||||||++.||+++||.+|++|
T Consensus 376 --~~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 376 --YNYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp --TTTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred --cCCCCeEEEccChHhcCcccHHhccCC
Confidence 345679999999999999999999998
No 8
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=100.00 E-value=5.7e-41 Score=314.18 Aligned_cols=130 Identities=39% Similarity=0.546 Sum_probs=114.4
Q ss_pred CCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCCCCcccChHHHHHHHHHHhCceECCCCCceeccCcccCCc
Q 005811 62 SSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHH 141 (676)
Q Consensus 62 ~~g~~~~~~~~e~e~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~v~~al~~~ag~~v~~dg~~~~~~~~~~~~~ 141 (676)
+++|.++| |||||||+|||||||||+|||+|||+||||+||+|||+||||||||+||||+||+|||||| ++.+
T Consensus 2 ~~~r~pt~--kErEnnk~RERrRRAIaakIfaGLR~~Gny~Lp~~aD~NeVLkALc~eAGw~Ve~DGTtyr-----~~~~ 74 (150)
T PF05687_consen 2 SGGRRPTW--KERENNKRRERRRRAIAAKIFAGLRAHGNYKLPKHADNNEVLKALCREAGWTVEPDGTTYR-----KGCK 74 (150)
T ss_pred CCcccccH--hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHhCCEEEccCCCeec-----cCCC
Confidence 45555555 7999999999999999999999999999999999999999999999999999999999999 3333
Q ss_pred cchhhhhhhhcccccccccccccCccc--ccccccccccccCCccccccCCCCCCCccccccccC
Q 005811 142 HLHQQMAAAAATTTAAFPVRSVESPLS--VKNCSVKASVECQPSVLRIDESLSPASFDSVVIPER 204 (676)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (676)
++ ......|.+...+.+|+.. +.+|+...++.++.+.++.+...||.++|++++++.
T Consensus 75 ~~------~~~~~~g~s~~~sp~ss~~~~~~ss~~~sp~~s~~~s~~ss~~pSp~~~d~~~~~~~ 133 (150)
T PF05687_consen 75 PP------EPMEIVGSSASASPCSSYQLSPNSSAFPSPVPSYQPSPSSSSFPSPSSLDSINNSSS 133 (150)
T ss_pred CC------ccccccccCCCCCCcCCCcCCccccCcCCcccccCCCcCCCCCCCCccccccccccc
Confidence 32 3445667777778777754 889999999999999999999999999999999877
No 9
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.28 E-value=2.8e-11 Score=127.12 Aligned_cols=218 Identities=14% Similarity=0.199 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHhcCcceEEE-eeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChh
Q 005811 269 PELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (676)
Q Consensus 269 ~~al~~~L~~LK~~GVdGVmv-DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~W 347 (676)
.+.++..|+.+|++|+.-|.+ .+-|..+|+ .+++|||+.++++++++++.||||...+.. -..|.|
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~------------~~~P~W 75 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKVILGTPT------------AAPPAW 75 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EEEEEECT------------TTS-HH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeEEEEecc------------cccccc
Confidence 478999999999999999996 899999998 699999999999999999999996543331 248999
Q ss_pred HHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhh-hhcccceEEEEecccCCcccCC
Q 005811 348 VMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD-LFVAGLICAVEIGLGPSGELKY 426 (676)
Q Consensus 348 V~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~-~l~~~vI~eI~VGLGPaGELRY 426 (676)
+. ++.||+...|+.|.+...--....+ .--..|+++++.|..++.. |-+...|..++|.=.|.+.
T Consensus 76 l~---~~~Pe~~~~~~~g~~~~~g~~~~~~--------~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~--- 141 (374)
T PF02449_consen 76 LY---DKYPEILPVDADGRRRGFGSRQHYC--------PNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH--- 141 (374)
T ss_dssp HH---CCSGCCC-B-TTTSBEECCCSTT-H--------CCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT---
T ss_pred hh---hhcccccccCCCCCcCccCCccccc--------hhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC---
Confidence 97 5799999999999873211111100 1134677777777777654 3334467788875433332
Q ss_pred CCCCCCCCCcCCccceehhchHHHHHHHHHHHHHhC------CcccCCCC--CCCCCCCC--CCCCCcccccCCcccccc
Q 005811 427 PSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRG------HSFWARGP--DNAGQYNS--LPHETGFFCERGDYDSYY 496 (676)
Q Consensus 427 PSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~G------~p~WG~gP--~nAg~YNs--~P~~t~FF~~gG~w~S~Y 496 (676)
.||++.+++.|++..++++ |..||+.- +....+.. +|..+....+.+ .
T Consensus 142 -----------------~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~-----~ 199 (374)
T PF02449_consen 142 -----------------RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPA-----Q 199 (374)
T ss_dssp -----------------S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HH-----H
T ss_pred -----------------cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChH-----H
Confidence 7999999999999999997 56888531 22234433 454444222211 1
Q ss_pred ccchHHHhHHHHHhHHHHHHHHHHHhcCCCceeeEecee
Q 005811 497 GRFFLNWYAQTLIDHADNVLSLASLAFEETKIIVKVPGV 535 (676)
Q Consensus 497 GkFFL~WYS~~Li~HGDrVLs~A~~vF~g~~l~aKV~GI 535 (676)
..+|...-+..+.++-..+..+.+++-++.+|..+.-+.
T Consensus 200 ~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~ 238 (374)
T PF02449_consen 200 WLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGS 238 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCcccc
Confidence 224555556888888888888888888888888887766
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.17 E-value=7.2e-06 Score=86.27 Aligned_cols=142 Identities=22% Similarity=0.348 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhH---HHHHHHHHHcCCcEEEEEEe--eccCCCCCCCcccc
Q 005811 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGY---RELFNIIREFNLKVQVVMAF--HEYGANDSGDAWIS 343 (676)
Q Consensus 269 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY---~~L~~mvr~~GLKlqvVmSF--HqCGGNVGD~~~IP 343 (676)
++..+.-|+++|++|+..|.+-|-|...|. .+++|||++- ..+++||++.||+| |+.+ -.|+ .-.+=-
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~a----E~~~gG 95 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICA----EWDNGG 95 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---T----TBGGGG
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEE--Eecccceecc----cccchh
Confidence 677889999999999999999999999998 5999999985 58899999999995 5554 3343 111123
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhc--ccceEEEEecccCC
Q 005811 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV--AGLICAVEIGLGPS 421 (676)
Q Consensus 344 LP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~--~~vI~eI~VGLGPa 421 (676)
||.|+... +++.+.+. +. .-++.-+.||+.+....++++- .|.|.-|||
T Consensus 96 ~P~Wl~~~----~~~~~R~~----~~----------------~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv----- 146 (319)
T PF01301_consen 96 LPAWLLRK----PDIRLRTN----DP----------------PFLEAVERWYRALAKIIKPLQYTNGGPIIMVQV----- 146 (319)
T ss_dssp --GGGGGS----TTS-SSSS-----H----------------HHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE-----
T ss_pred hhhhhhcc----cccccccc----ch----------------hHHHHHHHHHHHHHHHHHhhhhcCCCceehhhh-----
Confidence 99999853 34433211 11 2345666777777777777662 368999998
Q ss_pred cccCCCCCCCCCCCcCCccceehhchHHHHHHHHHHHHHhC
Q 005811 422 GELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRG 462 (676)
Q Consensus 422 GELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~G 462 (676)
|=-|=++. |=-.||. .|++.+++.|
T Consensus 147 -ENEyg~~~--------------~~~~Y~~-~l~~~~~~~g 171 (319)
T PF01301_consen 147 -ENEYGSYG--------------TDRAYME-ALKDAYRDWG 171 (319)
T ss_dssp -SSSGGCTS--------------S-HHHHH-HHHHHHHHTT
T ss_pred -hhhhCCCc--------------ccHhHHH-HHHHHHHHhh
Confidence 21222333 2236666 7888888776
No 11
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.00047 Score=79.72 Aligned_cols=150 Identities=21% Similarity=0.333 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHhcCcceEEE-eeeeeeeccCCCccccchhHHHH-HHHHHHcCCcEEEEEEeeccCCCCCCCccccCC
Q 005811 268 DPELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYAWSGYREL-FNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmv-DVWWGiVE~~~P~~YdWsgY~~L-~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP 345 (676)
..+.++..|+++|++|+.-|.+ ++-|+..|+ .-++|||+--++. ++|+.+.||++. |.. |. +---|
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~vi--l~t----~P-----~g~~P 95 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYVI--LRT----GP-----TGAPP 95 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceEE--Eec----CC-----CCCCc
Confidence 3489999999999999999999 999999998 5899999988888 999999999864 433 11 12379
Q ss_pred hhHHhhhccCCCeeeecCCCCcccCccccccccccccCCC---chHH-HHHHHHH----HHHHH-HhhhhcccceEEEEe
Q 005811 346 QWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGR---TGIE-VYFDFMR----SFRTE-FDDLFVAGLICAVEI 416 (676)
Q Consensus 346 ~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GR---Tpiq-~Y~DFMr----SFr~~-F~~~l~~~vI~eI~V 416 (676)
.|.. ++.|+|+.+|..|.+- ..-+| +|.+ .|+.+-+ .-|+. +.+.. -|...+|
T Consensus 96 ~Wl~---~~~PeiL~~~~~~~~~------------~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~---~v~~w~~ 157 (673)
T COG1874 96 AWLA---KKYPEILAVDENGRVR------------SDGARENICPVSPVYREYLDRILQQIRERLYGNGP---AVITWQN 157 (673)
T ss_pred hHHh---cCChhheEecCCCccc------------CCCcccccccccHHHHHHHHHHHHHHHHHHhccCC---ceeEEEc
Confidence 9998 5789999999997651 11122 1111 3544443 45555 44433 3666777
Q ss_pred cccCCcccCCCCCCCCCCCcCCccceehhchHHHHHHHHHHHHHhC------CcccC
Q 005811 417 GLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRG------HSFWA 467 (676)
Q Consensus 417 GLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~G------~p~WG 467 (676)
.- -|++| -||.+|..+.|+.+.++.+ +..|+
T Consensus 158 dn------eY~~~--------------~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~ 194 (673)
T COG1874 158 DN------EYGGH--------------PCYCDYCQAAFRLWLKKGYGSLDNLNEAWG 194 (673)
T ss_pred cC------ccCCc--------------cccccccHHHHHHHHHhCcchHHhhhhhhh
Confidence 66 34444 3999999999998888876 55666
No 12
>PLN03059 beta-galactosidase; Provisional
Probab=97.48 E-value=0.0013 Score=77.69 Aligned_cols=146 Identities=18% Similarity=0.242 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHH---HHHHHHcCCcEEEEEEeeccCCCCCCCccccC
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYREL---FNIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L---~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 344 (676)
-++.-+.-|+++|++|++.|.+-|-|.+-|+ .|++|||+|=++| +++|++.||.+.+=..=.-|+-=-. =-|
T Consensus 57 ~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~----GGl 131 (840)
T PLN03059 57 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNF----GGF 131 (840)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecC----CCC
Confidence 4678888999999999999999999999998 5999999998766 6788999999877665555542100 129
Q ss_pred ChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhc--------ccceEEEEe
Q 005811 345 PQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV--------AGLICAVEI 416 (676)
Q Consensus 345 P~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~--------~~vI~eI~V 416 (676)
|.|+++ +|+|.+. |--+.|.+-|+.|-++..+.+. .|-|..+||
T Consensus 132 P~WL~~----~~~i~~R------------------------s~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQI 183 (840)
T PLN03059 132 PVWLKY----VPGIEFR------------------------TDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQI 183 (840)
T ss_pred chhhhc----CCCcccc------------------------cCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEe
Confidence 999973 4555443 3335677777777666665552 356888888
Q ss_pred cccCCcccCCCCCCCCCCCcCCccceehhchHHHHHHHHHHHHHhC
Q 005811 417 GLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRG 462 (676)
Q Consensus 417 GLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~G 462 (676)
|=-|=||... +---|+--+.-|++.|++.|
T Consensus 184 ------ENEYGs~~~~----------~~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 184 ------ENEYGPVEWE----------IGAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred ------cccccceecc----------cCcchHHHHHHHHHHHHHcC
Confidence 5557665321 11225555667888888887
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=97.05 E-value=0.0049 Score=67.61 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=87.5
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 342 (676)
..+..-.+.+|+.||++|++.+.+.|=|.-+++.+++++| +..|+++++.+++.||+..|.|. | .
T Consensus 50 ~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H-----------f 117 (427)
T TIGR03356 50 CDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H-----------W 117 (427)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------C
Confidence 4567888999999999999999999999999998888888 79999999999999999988886 3 2
Q ss_pred cCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEe
Q 005811 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (676)
Q Consensus 343 PLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~V 416 (676)
-||.|+.+ +-|-.|. .-++.|.+|.+-..++|.+...- -||.|..+
T Consensus 118 d~P~~l~~------------~gGw~~~----------------~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 118 DLPQALED------------RGGWLNR----------------DTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CccHHHHh------------cCCCCCh----------------HHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 49999864 2233322 23578888888888999874321 25666654
No 14
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.81 E-value=0.0054 Score=60.30 Aligned_cols=103 Identities=16% Similarity=0.324 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeec-cCCCc---cccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCC
Q 005811 270 ELIRQEISHMKALNVDGVIVNCWWGIVE-GWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDVWWGiVE-~~~P~---~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP 345 (676)
...++.++.||++|+.-|.+.|.|...+ ...+. .--|..++++++.+++.||+| |+.+|. .|
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~------------~~ 86 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHN------------AP 86 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEE------------ST
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEecc------------Cc
Confidence 3789999999999999999999994444 43333 345778889999999999997 789995 27
Q ss_pred hhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccceEEEEe
Q 005811 346 QWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEI 416 (676)
Q Consensus 346 ~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI~eI~V 416 (676)
.|.. +..+. ....+..+.|.+|.+.++..|++. ..|.-++|
T Consensus 87 ~w~~------------~~~~~---------------~~~~~~~~~~~~~~~~la~~y~~~---~~v~~~el 127 (281)
T PF00150_consen 87 GWAN------------GGDGY---------------GNNDTAQAWFKSFWRALAKRYKDN---PPVVGWEL 127 (281)
T ss_dssp TCSS------------STSTT---------------TTHHHHHHHHHHHHHHHHHHHTTT---TTTEEEES
T ss_pred cccc------------ccccc---------------ccchhhHHHHHhhhhhhccccCCC---CcEEEEEe
Confidence 7710 00000 011124567888999999988653 34555554
No 15
>PLN02705 beta-amylase
Probab=96.01 E-value=0.01 Score=68.09 Aligned_cols=79 Identities=27% Similarity=0.293 Sum_probs=43.3
Q ss_pred ccccCCCCCCCCCCCCCCCC------CCCcchhhhhHHHHHHhhcCCCCCC----CCCCCCCCCccchhHHHHhHHHHHh
Q 005811 14 ELLTQPPTQTQNQTQSHSRR------PRGFAATAAAAAAAAAANNNSNSNN----NNASSGKGKKEREKEKERTKLRERH 83 (676)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~e~e~~~~rer~ 83 (676)
+...+|..+++|||+|++-+ +|-.-.-||.|++++.+ ...+.++ ++||||.|...+.||+|+.|.|-|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~ 90 (681)
T PLN02705 12 TGSQDPNLDPIPQPDPFPNRNRNQPQSRRPRGFAATAAAAAIA-PTENDVNNGNISSGGGGGGGGKGKREREKEKERTKL 90 (681)
T ss_pred ccccCcccCCCCCCCCCCCCCCCCCccCCCcchhhhhcccccC-CCcccccCccccCCCCCCCCCCCCCcchhhhhhhHH
Confidence 33444555555554444432 34455556655554433 3344443 2344444555556888888888888
Q ss_pred hhhHHHHHHh
Q 005811 84 RRAITSRMLA 93 (676)
Q Consensus 84 rrai~~~i~~ 93 (676)
|..=-+.|-+
T Consensus 91 rer~rrai~~ 100 (681)
T PLN02705 91 RERHRRAITS 100 (681)
T ss_pred HHHHHHHHHH
Confidence 8765554443
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=95.46 E-value=0.055 Score=59.64 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=76.6
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCC-Ccccc---chhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005811 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (676)
Q Consensus 267 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~-P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 342 (676)
....-.+..|+-||++|++...+-+=|.-+++.+ .+++| +..|++|++.+++.|++..|.|. | .
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H-----------~ 122 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H-----------F 122 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------S
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------c
Confidence 5678899999999999999999999999999987 77777 99999999999999999888875 3 2
Q ss_pred cCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhc
Q 005811 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (676)
Q Consensus 343 PLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~ 407 (676)
-||.|+.+.| |-.| |.-++.|.+|-+--.++|.+..+
T Consensus 123 ~~P~~l~~~g------------gw~~----------------~~~~~~F~~Ya~~~~~~~gd~V~ 159 (455)
T PF00232_consen 123 DLPLWLEDYG------------GWLN----------------RETVDWFARYAEFVFERFGDRVK 159 (455)
T ss_dssp --BHHHHHHT------------GGGS----------------THHHHHHHHHHHHHHHHHTTTBS
T ss_pred ccccceeecc------------cccC----------------HHHHHHHHHHHHHHHHHhCCCcc
Confidence 5999998642 2222 33467788888888888888553
No 17
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.42 E-value=0.033 Score=64.42 Aligned_cols=142 Identities=21% Similarity=0.349 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHH---HHHHcCCcEEEEE-EeeccCCCCCCCcccc
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFN---IIREFNLKVQVVM-AFHEYGANDSGDAWIS 343 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~---mvr~~GLKlqvVm-SFHqCGGNVGD~~~IP 343 (676)
-++--..-|+++|+.|.+.|.+-|.|.+-|. .|++|||||=.+|.+ +|++.||=+.-=+ .|=+--.|-| -
T Consensus 47 ~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~G-----G 120 (649)
T KOG0496|consen 47 TPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFG-----G 120 (649)
T ss_pred ChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCC-----C
Confidence 3556677899999999999999999999997 699999999888876 4556776553211 1211122333 3
Q ss_pred CChhHHhhhccCCCeeeecCCCCcccCccccccccccccC----CC-------chHHHHHHHHHHHHHHHhhhhcccceE
Q 005811 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLN----GR-------TGIEVYFDFMRSFRTEFDDLFVAGLIC 412 (676)
Q Consensus 344 LP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~----GR-------Tpiq~Y~DFMrSFr~~F~~~l~~~vI~ 412 (676)
||.|+. .-|.|.|..-..-.-.|.=.|.-=-+|..+ .. .--..|.++-+++++..+.|++...+.
T Consensus 121 ~P~wL~----~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m 196 (649)
T KOG0496|consen 121 LPWWLR----NVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVL 196 (649)
T ss_pred cchhhh----hCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEE
Confidence 897775 457888866555443333334422233211 00 111379999999999999999976666
Q ss_pred EEEeccc
Q 005811 413 AVEIGLG 419 (676)
Q Consensus 413 eI~VGLG 419 (676)
.+..+.|
T Consensus 197 ~~~l~~g 203 (649)
T KOG0496|consen 197 ATSLGTG 203 (649)
T ss_pred EEecCCC
Confidence 6666655
No 18
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=94.73 E-value=0.1 Score=53.01 Aligned_cols=211 Identities=14% Similarity=0.239 Sum_probs=115.3
Q ss_pred eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccCCCeeeecCCCCcccCcc
Q 005811 293 WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECL 372 (676)
Q Consensus 293 WGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~G~rn~EyL 372 (676)
|+.+|+ .+++|||+..+++++.+++.|++++.-..+..+ -.|.|+.+..
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~~~~-------------------- 51 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVFNLS-------------------- 51 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhhcCC--------------------
Confidence 899998 699999999999999999999999653333322 2789986321
Q ss_pred ccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccceEEEEecccCCcccCCCCCCCCCCCcCCccceehhchHHHHH
Q 005811 373 SWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQ 452 (676)
Q Consensus 373 Slg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymla 452 (676)
.+ .-.+...+|++....+|.+. |..++|.=-|-..= -+.+..+ -| ++..| +.|+..
T Consensus 52 ---~~--------~~~~~~~~~i~~v~~ry~g~-----i~~wdV~NE~~~~~-~~~~~~~-~w-~~~~G-----~~~i~~ 107 (254)
T smart00633 52 ---KE--------TLLARLENHIKTVVGRYKGK-----IYAWDVVNEALHDN-GSGLRRS-VW-YQILG-----EDYIEK 107 (254)
T ss_pred ---HH--------HHHHHHHHHHHHHHHHhCCc-----ceEEEEeeecccCC-Ccccccc-hH-HHhcC-----hHHHHH
Confidence 11 12467778888877777643 44555554333210 0001110 12 23344 468888
Q ss_pred HHHHHHHHhCCcccCCCCCCCCCCCCCCCCCcccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcC-CCceeeE
Q 005811 453 SLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFE-ETKIIVK 531 (676)
Q Consensus 453 sLk~aA~~~G~p~WG~gP~nAg~YNs~P~~t~FF~~gG~w~S~YGkFFL~WYS~~Li~HGDrVLs~A~~vF~-g~~l~aK 531 (676)
.|+.+.+.. |+ +..|-++ |+...+ - .+.++++...+.+.. |++|-+
T Consensus 108 af~~ar~~~------------------P~-a~l~~Nd--y~~~~~------~-----~k~~~~~~~v~~l~~~g~~iDg- 154 (254)
T smart00633 108 AFRYAREAD------------------PD-AKLFYND--YNTEEP------N-----AKRQAIYELVKKLKAKGVPIDG- 154 (254)
T ss_pred HHHHHHHhC------------------CC-CEEEEec--cCCcCc------c-----HHHHHHHHHHHHHHHCCCccce-
Confidence 887665431 22 2222221 221111 0 334566666666653 454311
Q ss_pred eceeeeccCCCCChhhhhccccCCCCCCChHHHHHHHhhcCcEEEEeee-cCCCCCCCCCCChHHHHHHHHHHHHhc
Q 005811 532 VPGVYWWYKTASHAAELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFVCA-VPSLQDQEALADPEGLSWQVLNLAWDR 607 (676)
Q Consensus 532 V~GIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FTCl-M~d~e~~~a~s~Pe~Lv~QV~~aA~~~ 607 (676)
=|++++..... .+.+....+++.|++.|..+.+|=+ +.....+ ..=...+++++.++..+
T Consensus 155 -iGlQ~H~~~~~------------~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~---~~qA~~~~~~l~~~~~~ 215 (254)
T smart00633 155 -IGLQSHLSLGS------------PNIAEIRAALDRFASLGLEIQITELDISGYPNP---QAQAADYEEVFKACLAH 215 (254)
T ss_pred -eeeeeeecCCC------------CCHHHHHHHHHHHHHcCCceEEEEeecCCCCcH---HHHHHHHHHHHHHHHcC
Confidence 13343332111 1123477888888999999999977 5432110 00012355555666554
No 19
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=94.28 E-value=0.3 Score=54.90 Aligned_cols=112 Identities=15% Similarity=0.247 Sum_probs=87.4
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCC----CccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~----P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~ 341 (676)
.....-.+..++-||++|++....-+=|.-+++.+ +++-.+..|++|++-+++.|++..|.|.-|
T Consensus 67 ~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~----------- 135 (474)
T PRK09852 67 IDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF----------- 135 (474)
T ss_pred CchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-----------
Confidence 45678889999999999999999999999998864 578889999999999999999999999866
Q ss_pred ccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEe
Q 005811 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (676)
Q Consensus 342 IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~V 416 (676)
.||.|+.+. --|-. .|.-++.|.+|-+-..++|.+..+- -||.|..|
T Consensus 136 -~~P~~l~~~-----------~GGW~----------------~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 136 -DVPMHLVTE-----------YGSWR----------------NRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred -CCCHHHHHh-----------cCCCC----------------CHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 599998531 01222 2344678888888888888874431 15667653
No 20
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.67 E-value=1.2 Score=42.22 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=73.2
Q ss_pred HHHHHHHhcCcceEEEeee--eeee------ccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCC
Q 005811 274 QEISHMKALNVDGVIVNCW--WGIV------EGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVW--WGiV------E~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP 345 (676)
+-++.||.+||+.|++.+= ||.. -...|.- .-.-..++++.+++.|+++.+-++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 4567899999999999665 6642 1111222 34667899999999999999999997 33
Q ss_pred hhHHhhhccCCCeeeecCCCC--cccCccccccccccccCCCchHHHHHHHHHHHHHHHhh
Q 005811 346 QWVMEIGKGNQDIFFTDREGR--RNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (676)
Q Consensus 346 ~WV~e~g~~npDIfytDr~G~--rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~ 404 (676)
.|+. +.+||=+..|++|+ +..+....+.-.+++ . + -|.||+..-.++.-+
T Consensus 70 ~~~~---~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~-n--s---~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 70 EDAA---ERHPEWFVRDADGRPMRGERFGYPGWYTCCL-N--S---PYREFLLEQIREILD 121 (132)
T ss_pred hHHH---HhCCceeeECCCCCCcCCCCcCCCCceecCC-C--c---cHHHHHHHHHHHHHH
Confidence 4443 68999999999999 334444433222222 1 2 477888776666543
No 21
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=92.39 E-value=0.75 Score=47.61 Aligned_cols=108 Identities=18% Similarity=0.342 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhH
Q 005811 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (676)
Q Consensus 272 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV 348 (676)
+...++++..+|+++|.++--|+--.--+|..|. |-+++++++-+++.|.+ ..+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~----~~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGP----VIHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCc----eEEEECC-Cch-----hHHHHH
Confidence 4556677778899999999988743322466555 99999999999998764 5679995 443 344555
Q ss_pred HhhhccCCCeeeecCCC-----Cc---ccCccccccccccccCCCchHHHHH
Q 005811 349 MEIGKGNQDIFFTDREG-----RR---NTECLSWGVDKERVLNGRTGIEVYF 392 (676)
Q Consensus 349 ~e~g~~npDIfytDr~G-----~r---n~EyLSlg~D~~pVl~GRTpiq~Y~ 392 (676)
.+.+ .|++-.|..- ++ .+-||-.++|..-+|..-||-++.+
T Consensus 240 ~~~~---~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~~ 288 (330)
T cd03465 240 ADLG---ADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIKE 288 (330)
T ss_pred HHhC---CCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHHH
Confidence 5443 4655555331 11 1346667788752344447644543
No 22
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=91.54 E-value=0.42 Score=53.71 Aligned_cols=113 Identities=9% Similarity=0.178 Sum_probs=85.6
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCC----CccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~----P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~ 341 (676)
.....-.+.+++-||++|++....-+=|.-+++.+ +++-.+..|++|++-+++.|++..|-|.-+
T Consensus 65 ~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~----------- 133 (477)
T PRK15014 65 VDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHF----------- 133 (477)
T ss_pred cCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-----------
Confidence 35667889999999999999999999999998864 577789999999999999999988877644
Q ss_pred ccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEec
Q 005811 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEIG 417 (676)
Q Consensus 342 IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~VG 417 (676)
-||.|+.+. --|-.| |.-++.|.+|-+-.-++|.+...- -||.|+.|-
T Consensus 134 -dlP~~L~~~-----------yGGW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 134 -EMPLHLVQQ-----------YGSWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred -CCCHHHHHh-----------cCCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 599999642 012222 233677888877777777764320 267787653
No 23
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.29 E-value=18 Score=38.69 Aligned_cols=230 Identities=15% Similarity=0.184 Sum_probs=132.4
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeee-------eeccCC------Ccc-ccchhHHHHHHHHHHcCCcEEEEEEeec
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWG-------IVEGWN------PQK-YAWSGYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWG-------iVE~~~------P~~-YdWsgY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
+..++.+++-|+.||++|+..|-++||+. -+++.+ +++ -.|.--..+.+.+++.||+|++=|-|--
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 44789999999999999999999999985 122211 011 1244556778888999999999885432
Q ss_pred cCCCCCCCccccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcccce
Q 005811 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLI 411 (676)
Q Consensus 332 CGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI 411 (676)
-...++.-. ---|.|+. ..+++...+...+.-+.=+|.-+ ...=++|+.+--.+.-.-.+ |
T Consensus 95 ~~~~~~~~~-~~~p~~~~---~~~~~~~~~~~~~~~~~~~lnP~------------~PeVr~~i~~~v~Eiv~~Yd---v 155 (311)
T PF02638_consen 95 NAPDVSHIL-KKHPEWFA---VNHPGWVRTYEDANGGYYWLNPG------------HPEVRDYIIDIVKEIVKNYD---V 155 (311)
T ss_pred CCCchhhhh-hcCchhhe---ecCCCceeecccCCCCceEECCC------------CHHHHHHHHHHHHHHHhcCC---C
Confidence 222222111 12477764 34566555444443333344443 24556777776666533222 6
Q ss_pred EEEEecccCCcccCCCCCCCCCCCcCCccceehhchHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCcccccCCc
Q 005811 412 CAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGD 491 (676)
Q Consensus 412 ~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~G~p~WG~gP~nAg~YNs~P~~t~FF~~gG~ 491 (676)
..|.+= -.|||.. . + -||.+..+.+++. .|. .|. ..|...
T Consensus 156 DGIhlD-----dy~yp~~--~--~---------g~~~~~~~~y~~~---~g~-----~~~------~~~~d~-------- 195 (311)
T PF02638_consen 156 DGIHLD-----DYFYPPP--S--F---------GYDFPDVAAYEKY---TGK-----DPF------SSPEDD-------- 195 (311)
T ss_pred CeEEec-----ccccccc--c--C---------CCCCccHHHHHHh---cCc-----CCC------CCccch--------
Confidence 666543 3455532 1 1 1344445555542 110 110 001110
Q ss_pred cccccccchHHHhHHHHHhHHHHHHHHHHHhcCCCceeeEeceeeeccCCCCChhhhhccccCCCCCCChHHHHHHHhhc
Q 005811 492 YDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEETKIIVKVPGVYWWYKTASHAAELTAGYYNPSNQDGYAPVFEVLKKH 571 (676)
Q Consensus 492 w~S~YGkFFL~WYS~~Li~HGDrVLs~A~~vF~g~~l~aKV~GIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mf~rh 571 (676)
...+|-.+.+-.--.+|-...+++=+.+.+++=+.|+. |.+-.+=|.....-+++-
T Consensus 196 -------~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~-----------------~~~y~~~~qD~~~W~~~G 251 (311)
T PF02638_consen 196 -------AWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIW-----------------NSAYDDYYQDWRNWLKEG 251 (311)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecch-----------------hhhhhheeccHHHHHhcC
Confidence 07889988888888888888877777788887555542 123334577788888764
Q ss_pred CcEEEEe
Q 005811 572 SVTMKFV 578 (676)
Q Consensus 572 ~v~l~FT 578 (676)
-++..++
T Consensus 252 ~iD~i~P 258 (311)
T PF02638_consen 252 YIDYIVP 258 (311)
T ss_pred CccEEEe
Confidence 4555544
No 24
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=89.34 E-value=1.5 Score=49.08 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=83.8
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCc---cccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~---~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 342 (676)
..+..-.+.+++-||++|++.-..-+=|.-|++.+++ +=-+..|++|++-+++.|++-.|.|. | .
T Consensus 50 ~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H-----------~ 117 (469)
T PRK13511 50 SDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H-----------F 117 (469)
T ss_pred cchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------C
Confidence 4677889999999999999999999999999998764 44578899999999999999887775 4 3
Q ss_pred cCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEe
Q 005811 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (676)
Q Consensus 343 PLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~V 416 (676)
-||.|+.+ +-|-.|.|. ++.|.+|-+-.-++|.| .+. -||.|..+
T Consensus 118 dlP~~L~~------------~GGW~n~~~----------------v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 118 DTPEALHS------------NGDWLNREN----------------IDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred CCcHHHHH------------cCCCCCHHH----------------HHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 69999964 234444443 56677776666777777 541 24666543
No 25
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=88.79 E-value=1 Score=50.50 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=82.1
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccc---cchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y---dWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 342 (676)
.......+.+++-||++|+..-..-+=|.-+++.+++++ -...|++|++-+++.|++-.|.|. | .
T Consensus 49 ~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H-----------~ 116 (467)
T TIGR01233 49 SDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H-----------F 116 (467)
T ss_pred CchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C-----------C
Confidence 467789999999999999999999999999999887766 377899999999999999777765 4 3
Q ss_pred cCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhc-ccceEEEEe
Q 005811 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV-AGLICAVEI 416 (676)
Q Consensus 343 PLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~-~~vI~eI~V 416 (676)
-||.|+.+ +-|-.|.|. ++.|.+|-+---++|.+ .+ =-||.|..+
T Consensus 117 dlP~~L~~------------~GGW~n~~~----------------v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 117 DTPEALHS------------NGDFLNREN----------------IEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred CCcHHHHH------------cCCCCCHHH----------------HHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 59999964 234444443 55666665555566665 32 125666553
No 26
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=87.71 E-value=1.2 Score=47.33 Aligned_cols=205 Identities=18% Similarity=0.341 Sum_probs=115.6
Q ss_pred HHHHHHhcCcceEEEe--eeeeeeccCCCccccchhHHHHHHHHHHcCCcEE--EEEEeeccCCCCCCCccccCChhHHh
Q 005811 275 EISHMKALNVDGVIVN--CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ--VVMAFHEYGANDSGDAWISLPQWVME 350 (676)
Q Consensus 275 ~L~~LK~~GVdGVmvD--VWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlq--vVmSFHqCGGNVGD~~~IPLP~WV~e 350 (676)
..+.+-..-..-|+.. .=|+.+|+ .+++|||+.-+++.+.+++.|++++ +++. |. -.|.||.+
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVW-HS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEE-cc-----------cccceeee
Confidence 3444444555566654 88999997 6899999999999999999999995 5555 53 28999986
Q ss_pred hhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEe---cccCCc---c
Q 005811 351 IGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI---GLGPSG---E 423 (676)
Q Consensus 351 ~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~V---GLGPaG---E 423 (676)
....+++ + -+.....|+.+-++.-.-.++ |.|....| -+...| .
T Consensus 93 ~~~~~~~------------~-----------------~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~ 143 (320)
T PF00331_consen 93 LANGSPD------------E-----------------KEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGG 143 (320)
T ss_dssp STTSSBH------------H-----------------HHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSS
T ss_pred ccCCCcc------------c-----------------HHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCcccc
Confidence 4111110 0 124444444444443333332 34444433 133222 2
Q ss_pred cCCCCCCCCCCCcCCccceehhchHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCcccccCCccccccccchHHH
Q 005811 424 LKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGRFFLNW 503 (676)
Q Consensus 424 LRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~G~p~WG~gP~nAg~YNs~P~~t~FF~~gG~w~S~YGkFFL~W 503 (676)
||- ..| |.-+| +.|....|+.|-+.. |.-.-|..| |+....
T Consensus 144 ~r~------~~~-~~~lG-----~~yi~~aF~~A~~~~------------------P~a~L~~ND---y~~~~~------ 184 (320)
T PF00331_consen 144 LRD------SPW-YDALG-----PDYIADAFRAAREAD------------------PNAKLFYND---YNIESP------ 184 (320)
T ss_dssp BCT------SHH-HHHHT-----TCHHHHHHHHHHHHH------------------TTSEEEEEE---SSTTST------
T ss_pred ccC------Chh-hhccc-----HhHHHHHHHHHHHhC------------------CCcEEEecc---ccccch------
Confidence 332 111 12234 678888898877743 323334433 333222
Q ss_pred hHHHHHhHHHHHHHHHHHhc-CCCceeeEecee----eeccCCCCChhhhhccccCCCCCCChHHHHHHHhhcCcEEEEe
Q 005811 504 YAQTLIDHADNVLSLASLAF-EETKIIVKVPGV----YWWYKTASHAAELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFV 578 (676)
Q Consensus 504 YS~~Li~HGDrVLs~A~~vF-~g~~l~aKV~GI----HWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mf~rh~v~l~FT 578 (676)
.+-++++.+.+.+= .|++ |-|| |+..... .+.+...++.|+..|+.+++|
T Consensus 185 ------~k~~~~~~lv~~l~~~gvp----IdgIG~Q~H~~~~~~---------------~~~i~~~l~~~~~~Gl~i~IT 239 (320)
T PF00331_consen 185 ------AKRDAYLNLVKDLKARGVP----IDGIGLQSHFDAGYP---------------PEQIWNALDRFASLGLPIHIT 239 (320)
T ss_dssp ------HHHHHHHHHHHHHHHTTHC----S-EEEEEEEEETTSS---------------HHHHHHHHHHHHTTTSEEEEE
T ss_pred ------HHHHHHHHHHHHHHhCCCc----cceechhhccCCCCC---------------HHHHHHHHHHHHHcCCceEEE
Confidence 55777777776544 2455 4444 5443322 334667788888899999999
Q ss_pred ee-cCCCC
Q 005811 579 CA-VPSLQ 585 (676)
Q Consensus 579 Cl-M~d~e 585 (676)
=+ +.+..
T Consensus 240 ElDv~~~~ 247 (320)
T PF00331_consen 240 ELDVRDDD 247 (320)
T ss_dssp EEEEESSS
T ss_pred eeeecCCC
Confidence 99 66544
No 27
>PLN02814 beta-glucosidase
Probab=87.04 E-value=3 Score=47.54 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=85.0
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccc---hhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW---SGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 342 (676)
.....-.+..++-||++|++.-..-+=|.-|++.+++++|- ..|++|++-+++.|++-.|-|. | .
T Consensus 73 ~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H-----------~ 140 (504)
T PLN02814 73 SDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H-----------Y 140 (504)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 46778899999999999999999999999999988777775 6799999999999999888775 4 3
Q ss_pred cCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEe
Q 005811 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (676)
Q Consensus 343 PLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~V 416 (676)
-||.|+.+. --|-.| |.-++.|.+|-+---++|.|..+- -||.|..+
T Consensus 141 dlP~~L~~~-----------yGGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 141 DLPQSLEDE-----------YGGWIN----------------RKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred CCCHHHHHh-----------cCCcCC----------------hhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 699999641 023333 334567777777777778775431 14556653
No 28
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=86.15 E-value=1.5 Score=49.42 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=83.1
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCC----CccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~----P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~ 341 (676)
.....-.+.+++-||++|+..-..-+=|.-|++.| +++=-...|++|++-+++.|++-.|-|. |
T Consensus 63 ~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H----------- 130 (476)
T PRK09589 63 IDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H----------- 130 (476)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------
Confidence 46778899999999999999999999999999975 2444578899999999999999888874 4
Q ss_pred ccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEe
Q 005811 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (676)
Q Consensus 342 IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~V 416 (676)
.-||.|+.+. --|-.|. .-++.|.+|-+---++|.|..+. -||.|..+
T Consensus 131 ~dlP~~L~~~-----------yGGW~n~----------------~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 131 FEMPYHLVTE-----------YGGWRNR----------------KLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred CCCCHHHHHh-----------cCCcCCh----------------HHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 3599999531 0233333 33566777766666777764431 25677654
No 29
>PLN02849 beta-glucosidase
Probab=85.65 E-value=4.3 Score=46.31 Aligned_cols=112 Identities=14% Similarity=0.174 Sum_probs=84.6
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 342 (676)
..+..-.+.+++-||++|++.-..-+=|--|++.+.+++| ...|++|++-+++.|++-.|-|. | .
T Consensus 75 ~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H-----------~ 142 (503)
T PLN02849 75 CDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H-----------Y 142 (503)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------C
Confidence 4678889999999999999999999999999998766555 66799999999999999887775 4 4
Q ss_pred cCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEe
Q 005811 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (676)
Q Consensus 343 PLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~V 416 (676)
-||.|+.+. --|-.| |.-++.|.+|-+---++|.|..+- -||.|..+
T Consensus 143 dlP~~L~~~-----------yGGW~n----------------r~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 143 DHPQYLEDD-----------YGGWIN----------------RRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CCcHHHHHh-----------cCCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 699999641 023333 334677777777777777774431 15667654
No 30
>PLN02998 beta-glucosidase
Probab=85.58 E-value=3.6 Score=46.78 Aligned_cols=112 Identities=13% Similarity=0.198 Sum_probs=84.5
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 342 (676)
.....-.+.+++-||++|++.-..-+=|.-|++.+.+.+| ...|++|++-+++.|++-.|.|. | .
T Consensus 78 ~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H-----------~ 145 (497)
T PLN02998 78 CDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H-----------F 145 (497)
T ss_pred ccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 4678889999999999999999999999999998776665 66899999999999999877775 4 4
Q ss_pred cCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEe
Q 005811 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (676)
Q Consensus 343 PLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~V 416 (676)
-||.|+.+. --|-.| |.-++.|.+|-+---++|.|..+- -||.|+.+
T Consensus 146 dlP~~L~~~-----------yGGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 146 DLPQALEDE-----------YGGWLS----------------QEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCCHHHHHh-----------hCCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 699999641 022222 344677777777767777774321 15667653
No 31
>PRK01060 endonuclease IV; Provisional
Probab=85.52 E-value=1.7 Score=43.96 Aligned_cols=59 Identities=7% Similarity=0.108 Sum_probs=42.7
Q ss_pred EeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEE
Q 005811 254 MLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQ 324 (676)
Q Consensus 254 MLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs-----gY~~L~~mvr~~GLKlq 324 (676)
|+++++.++- . +.|+..|+.++++|.|+|++.++ .|..|... .-+++-+++++.||++.
T Consensus 1 ~~~~g~~~~~--~---~~~~~~l~~~~~~G~d~vEl~~~-------~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 1 MKLIGAHVSA--A---GGLEGAVAEAAEIGANAFMIFTG-------NPQQWKRKPLEELNIEAFKAACEKYGISPE 64 (281)
T ss_pred CCeEEEeeec--C---CCHHHHHHHHHHcCCCEEEEECC-------CCCCCcCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 6677776531 1 23899999999999999999764 34444332 35668889999999974
No 32
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=84.19 E-value=10 Score=39.22 Aligned_cols=112 Identities=18% Similarity=0.276 Sum_probs=66.7
Q ss_pred HHHHHHHHhcC-cceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhh
Q 005811 273 RQEISHMKALN-VDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEI 351 (676)
Q Consensus 273 ~~~L~~LK~~G-VdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~ 351 (676)
..-|+.+-.+| ||.|.|++.++. ...++|.+.+++.|.| +|+|+|.=.+. .+.|-+..
T Consensus 98 ~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~k--vI~S~H~f~~t--------P~~~~l~~ 156 (253)
T PRK02412 98 LALIKAVIKSGLPDYIDVELFSGK-----------DVVKEMVAFAHEHGVK--VVLSYHDFEKT--------PPKEEIVE 156 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeccCCh-----------HHHHHHHHHHHHcCCE--EEEeeCCCCCC--------cCHHHHHH
Confidence 33466677778 999999986531 2356788888887765 78899943211 22332210
Q ss_pred hccCCCeeeecCCCCcccCccccccccccc-cCCCchHHHHHHHHHHHHHHHhhhhcccceEEEEecccCCccc
Q 005811 352 GKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGEL 424 (676)
Q Consensus 352 g~~npDIfytDr~G~rn~EyLSlg~D~~pV-l~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI~eI~VGLGPaGEL 424 (676)
.-.++.++|+|-+.+ ..-+++-++.. .+ .|..++..-.. .+-=|.++||+-|-+
T Consensus 157 ---------------~~~~~~~~gaDivKia~~a~~~~D~~~-ll-~~~~~~~~~~~--~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 157 ---------------RLRKMESLGADIVKIAVMPQSEQDVLT-LL-NATREMKELYA--DQPLITMSMGKLGRI 211 (253)
T ss_pred ---------------HHHHHHHhCCCEEEEEecCCCHHHHHH-HH-HHHHHHHhcCC--CCCEEEEeCCCCchH
Confidence 113566788887666 34556655554 33 34444433211 234578999998854
No 33
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=83.74 E-value=9.3 Score=38.65 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=65.2
Q ss_pred HHHH-HhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhcc
Q 005811 276 ISHM-KALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKG 354 (676)
Q Consensus 276 L~~L-K~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~ 354 (676)
|+.+ +..|+|.|.||++|.. ...++|.+.+++.|- .+|+|+|.=.+. -+.+.|+.-
T Consensus 84 l~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~--kvI~S~H~f~~t------p~~~~l~~~---- 140 (228)
T TIGR01093 84 LKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGT--KIIMSYHDFQKT------PSWEEIVER---- 140 (228)
T ss_pred HHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCC--EEEEeccCCCCC------CCHHHHHHH----
Confidence 5554 6789999999998742 235677777777764 588899943211 112223211
Q ss_pred CCCeeeecCCCCcccCccccccccccc-cCCCchHHHHHHHHHHHHHHHhhhhcccceEEEEecccCCcccC
Q 005811 355 NQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELK 425 (676)
Q Consensus 355 npDIfytDr~G~rn~EyLSlg~D~~pV-l~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI~eI~VGLGPaGELR 425 (676)
-.++.++|+|-+.+ ..-+++-+.. ..+ +|..++.... .+-=|.++||+.|-+-
T Consensus 141 -------------~~~~~~~gaDivKia~~a~~~~D~~-~ll-~~~~~~~~~~---~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 141 -------------LEKALSYGADIVKIAVMANSKEDVL-TLL-EITNKVDEHA---DVPLITMSMGDRGKIS 194 (228)
T ss_pred -------------HHHHHHhCCCEEEEEeccCCHHHHH-HHH-HHHHHHHhcC---CCCEEEEeCCCCChhH
Confidence 13555788887765 2345554433 222 5555555441 2455789999998653
No 34
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=83.67 E-value=0.8 Score=48.54 Aligned_cols=105 Identities=16% Similarity=0.294 Sum_probs=68.9
Q ss_pred CCCCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCc
Q 005811 243 FTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLK 322 (676)
Q Consensus 243 ~~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLK 322 (676)
++...+|.|.+..--..-.+...+.+. +++.|+.+++.||.||.||.. .+..|+-=..|++|++.+-+.+|-
T Consensus 81 Ya~~KgVgi~lw~~~~~~~~~~~~~~~--~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lm 152 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETGGNVANLEKQ--LDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLM 152 (273)
T ss_dssp HHHHTT-EEEEEEECCHTTBHHHHHCC--HHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHcCCCEEEEEeCCcchhhHhHHHH--HHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcE
Confidence 445678888887765542111113333 699999999999999999986 458898999999999999999874
Q ss_pred EEEEEEeeccCCCCCCCccccCCh-hHHhhhccCCCeeeecCCCCcccCccccc
Q 005811 323 VQVVMAFHEYGANDSGDAWISLPQ-WVMEIGKGNQDIFFTDREGRRNTECLSWG 375 (676)
Q Consensus 323 lqvVmSFHqCGGNVGD~~~IPLP~-WV~e~g~~npDIfytDr~G~rn~EyLSlg 375 (676)
+-||.|= +|. |- ...|.+ ..++|-|-.||-.|.
T Consensus 153 ----vnfHg~~----------kPtG~~----RTyPN~--mT~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 153 ----VNFHGAT----------KPTGLR----RTYPNL--MTREGVRGQEYNKWS 186 (273)
T ss_dssp ----EEETTS-------------TTHH----HCSTTE--EEE--S--GGGGGTT
T ss_pred ----EEecCCc----------CCCccc----ccCccH--HHHHHhhhhhhcccc
Confidence 5799874 554 44 366664 468888989995554
No 35
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=82.66 E-value=1.7 Score=45.71 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeccCCCcc---ccchhHHHHHHHHHHcCCcEEEEEEeeccCC
Q 005811 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (676)
Q Consensus 272 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~---YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 334 (676)
+...++++.++|+|+|.+.--|+-..--+|.+ |-|-+++++++-+++.|.. + .+|-||.
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~--~--ilH~CG~ 243 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGI--T--VLHICGF 243 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCc--e--EEEECCC
Confidence 35566777899999998887776332335654 4499999999999988732 3 3699973
No 36
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=82.19 E-value=3.6 Score=46.44 Aligned_cols=112 Identities=13% Similarity=0.230 Sum_probs=82.2
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCC-C---ccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-P---QKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~-P---~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~ 341 (676)
.....-.+.+++-||++|++....-+=|.-|++.+ + ++=-...|++|++-+++.|++-.|.|- |
T Consensus 69 ~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H----------- 136 (478)
T PRK09593 69 IDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H----------- 136 (478)
T ss_pred cchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------
Confidence 46778999999999999999999999999999976 3 344578899999999999999888775 4
Q ss_pred ccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEe
Q 005811 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (676)
Q Consensus 342 IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~V 416 (676)
.-||.|+.+. --|-.|. .-++.|.+|-+---++|.+...- -||.|..+
T Consensus 137 ~dlP~~L~~~-----------~GGW~n~----------------~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 137 FDCPMHLIEE-----------YGGWRNR----------------KMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred cCCCHHHHhh-----------cCCCCCh----------------HHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 3599999641 0233333 33566667766656666664321 15667654
No 37
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=81.67 E-value=5.7 Score=41.59 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=66.9
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 005811 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvV 326 (676)
..+|+.+|.=...|- .-.+++-++.+|++||+||-+. + .-+....++++.+++.||++.+.
T Consensus 88 ~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviip----------D--Lp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIP----------D--LPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEEC----------C--CCHHHHHHHHHHHHHcCCcEEEE
Confidence 457888888776553 2367778999999999999995 1 12467889999999999999987
Q ss_pred EEeeccCCCCCCCccccCChhHHhhhccCCC-eeeecCCCC
Q 005811 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR 366 (676)
Q Consensus 327 mSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfytDr~G~ 366 (676)
++=. .-+..+..+.+..++ |+|..+.|.
T Consensus 149 vap~------------t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 149 VAPT------------TTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred eCCC------------CCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 7654 235688878777778 666677663
No 38
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=81.35 E-value=2.6 Score=43.19 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeecc--CCCc---cccchhHHHHHHHHHHcCCcEEEEEEeeccCCC
Q 005811 270 ELIRQEISHMKALNVDGVIVNCWWGIVEG--WNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~--~~P~---~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGN 335 (676)
+.+...++++.++|+++|.++-=|+-... -+|. +|-|.+|+++++.+++.|.++ ..|-||+.
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~----~lH~cg~~ 210 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI----VHHSCYDA 210 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce----EEEECCCH
Confidence 34667777899999999998865553321 1344 455999999999988877543 35999963
No 39
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=79.56 E-value=3.7 Score=40.55 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccC-CCccc-------------cchhHHHHHHHHHHcCCcEEEEEEe-ecc
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKY-------------AWSGYRELFNIIREFNLKVQVVMAF-HEY 332 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~-~P~~Y-------------dWsgY~~L~~mvr~~GLKlqvVmSF-HqC 332 (676)
|.+.|.+.|..||.+||++|.+- .|.|.. +..-| .+..+++|.+.+++.|+||..=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~---Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLS---PIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEES---S-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceecc---cccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 56889999999999999999885 344432 12222 2456789999999999999766555 765
Q ss_pred CC
Q 005811 333 GA 334 (676)
Q Consensus 333 GG 334 (676)
..
T Consensus 79 ~~ 80 (316)
T PF00128_consen 79 DD 80 (316)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 40
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=78.48 E-value=32 Score=34.59 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=74.8
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhc
Q 005811 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGK 353 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~ 353 (676)
.-|+.+-.+|+|.|.||..+ .-..++...+++. +..+|+|+|.-.+.. +.+.|..-.
T Consensus 80 ~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~--~~kiI~S~H~f~~tp------~~~~l~~~~-- 136 (225)
T cd00502 80 ELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKG--NTKIIGSYHDFSGTP------SDEELVSRL-- 136 (225)
T ss_pred HHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhC--CCEEEEEeccCCCCc------CHHHHHHHH--
Confidence 34666667789999998755 2356666666654 455788999544322 233333211
Q ss_pred cCCCeeeecCCCCcccCcccccccccccc-CCCchHHHHHHHHHHHHHHHhhhhcccceEEEEecccCCcccC-CCCCCC
Q 005811 354 GNQDIFFTDREGRRNTECLSWGVDKERVL-NGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELK-YPSLSE 431 (676)
Q Consensus 354 ~npDIfytDr~G~rn~EyLSlg~D~~pVl-~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI~eI~VGLGPaGELR-YPSYp~ 431 (676)
.++-.+|+|-+.+- .-+++-+.. +.| .|..++.... .+.=|.++||+.|.+- -=+.--
T Consensus 137 ---------------~~~~~~gadivKla~~~~~~~D~~-~ll-~~~~~~~~~~---~~p~i~~~MG~~G~~SRil~~~~ 196 (225)
T cd00502 137 ---------------EKMAALGADIVKIAVMANSIEDNL-RLL-KFTRQVKNLY---DIPLIAINMGELGKLSRILSPVF 196 (225)
T ss_pred ---------------HHHHHhCCCEEEEEecCCCHHHHH-HHH-HHHHHHHhcC---CCCEEEEEcCCCCchhhcccccc
Confidence 23345667766652 333433333 233 3444444322 2455789999999643 111111
Q ss_pred CCCCcCCccceehhchHHHHHHHHH
Q 005811 432 RMGWRYPGIGEFQCYDRYLQQSLRK 456 (676)
Q Consensus 432 ~~GW~yPGiGEFQCYDkymlasLk~ 456 (676)
..-+.|..+|+-..-.+.-+..|++
T Consensus 197 gs~~t~~~~~~~sApGQ~~~~~l~~ 221 (225)
T cd00502 197 GSPLTYASLPEPSAPGQLSVEELKQ 221 (225)
T ss_pred CCcccccCCCCCCCCCCcCHHHHHH
Confidence 1126666666555554444444444
No 41
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=77.72 E-value=4.6 Score=43.95 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=39.7
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeec
Q 005811 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
.-|+-||..||.-|.+-|| |.+...+..|...-.++++-++++|||+- |-||-
T Consensus 28 d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~vl--ldfHY 80 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKVL--LDFHY 80 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EEE--EEE-S
T ss_pred CHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeEE--Eeecc
Confidence 4688899999999999997 66654588889999999999999999976 88884
No 42
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=76.57 E-value=4.2 Score=44.23 Aligned_cols=82 Identities=10% Similarity=0.153 Sum_probs=52.3
Q ss_pred CccEEEEeeceeecCC-----C----cccCHHHHHHH-----------HHHHHhcCcce-EEEeeeeeeeccCCCcccc-
Q 005811 248 YIPVYVMLANHVINNF-----C----QLVDPELIRQE-----------ISHMKALNVDG-VIVNCWWGIVEGWNPQKYA- 305 (676)
Q Consensus 248 ~vpVyVMLPLd~V~~~-----~----~l~~~~al~~~-----------L~~LK~~GVdG-VmvDVWWGiVE~~~P~~Yd- 305 (676)
.+-..+..|++++... + -+++++.+.+- +++..++|++| |.+...-+-.+-=+|.+|+
T Consensus 172 pi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~e 251 (378)
T cd03308 172 NAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEK 251 (378)
T ss_pred ccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHH
Confidence 3556788899855421 1 13356555444 44556779998 6666642222222455555
Q ss_pred --chhHHHHHHHHHHcCCcEEEEEEeeccC
Q 005811 306 --WSGYRELFNIIREFNLKVQVVMAFHEYG 333 (676)
Q Consensus 306 --WsgY~~L~~mvr~~GLKlqvVmSFHqCG 333 (676)
|-+++++++-|++.|.+ +| .|-||
T Consensus 252 f~~P~~k~i~~~i~~~g~~--~i--lh~cG 277 (378)
T cd03308 252 FYWPSFKKVVEGLAARGQR--IF--LFFEG 277 (378)
T ss_pred HHHHHHHHHHHHHHhcCCC--EE--EEcCC
Confidence 99999999999998754 23 39998
No 43
>PLN02591 tryptophan synthase
Probab=76.41 E-value=12 Score=39.29 Aligned_cols=89 Identities=11% Similarity=0.175 Sum_probs=66.3
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 005811 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvV 326 (676)
..+|+.+|.=...|- .-.+++-++.+|++||+||.+. ..-+..-.++.+.+++.||.....
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~Gviip------------DLP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVP------------DLPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeC------------CCCHHHHHHHHHHHHHcCCeEEEE
Confidence 446888888776653 2478888999999999999987 123567778999999999999998
Q ss_pred EEeeccCCCCCCCccccCChhHHhhhccCCC-eeeecCCCC
Q 005811 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR 366 (676)
Q Consensus 327 mSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfytDr~G~ 366 (676)
.+-. .-+..+..+.+.-++ |++..+.|.
T Consensus 138 v~Pt------------t~~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 138 TTPT------------TPTERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred eCCC------------CCHHHHHHHHHhCCCcEEEeeCCCC
Confidence 8765 235688888777777 444455543
No 44
>PRK10785 maltodextrin glucosidase; Provisional
Probab=76.34 E-value=60 Score=37.80 Aligned_cols=111 Identities=17% Similarity=0.259 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc-------------chhHHHHHHHHHHcCCcEEEEEEeeccCC
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd-------------WsgY~~L~~mvr~~GLKlqvVmSFHqCGG 334 (676)
|.++|.+.|..||++||++|-+-= |.|..+-..|+ ...+++|++.+++.|+||..=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 679999999999999999998753 34544434444 35688999999999999998888877762
Q ss_pred CCCCCccccCChhHHhhhc-----------cCCCeeeecCCCCcccCcccc-ccccccccCCCchHHHHHHHHH
Q 005811 335 NDSGDAWISLPQWVMEIGK-----------GNQDIFFTDREGRRNTECLSW-GVDKERVLNGRTGIEVYFDFMR 396 (676)
Q Consensus 335 NVGD~~~IPLP~WV~e~g~-----------~npDIfytDr~G~rn~EyLSl-g~D~~pVl~GRTpiq~Y~DFMr 396 (676)
+ -.|+..... ...|-|+-+..| .|.+| +++.+|-|.=..| ...+||.
T Consensus 254 ----~-----~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~----~~~~w~g~~~lPdLN~~np--~v~~~l~ 312 (598)
T PRK10785 254 ----S-----HPWFDRHNRGTGGACHHPDSPWRDWYSFSDDG----RALDWLGYASLPKLDFQSE--EVVNEIY 312 (598)
T ss_pred ----C-----CHHHHHhhccccccccCCCCCcceeeEECCCC----CcCCcCCCCcCccccCCCH--HHHHHHH
Confidence 2 127655421 112444444444 24565 4677887754333 4556654
No 45
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=76.24 E-value=70 Score=36.82 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=104.8
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCc-ccc---chhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQ-KYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~-~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~ 341 (676)
.....-.+..++-+|++|+....+-+=|.-+-+.+.+ ..| =..|++||+-+.+.|++..|-|+ |
T Consensus 55 ~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-H----------- 122 (460)
T COG2723 55 SDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-H----------- 122 (460)
T ss_pred cchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------
Confidence 4567888999999999999999999999999986655 555 45699999999999999887775 3
Q ss_pred ccCChhHHhhhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhcc-cceEEEEecccC
Q 005811 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEIGLGP 420 (676)
Q Consensus 342 IPLP~WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~~-~vI~eI~VGLGP 420 (676)
..||.|+.+.. -|-.| |.-|+.|..|-+---..|.|..+- -|.-|+.|=+.
T Consensus 123 fd~P~~L~~~y-----------gGW~n----------------R~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~- 174 (460)
T COG2723 123 FDLPLWLQKPY-----------GGWEN----------------RETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVE- 174 (460)
T ss_pred cCCcHHHhhcc-----------CCccC----------------HHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhc-
Confidence 47999998542 23332 455778888877777777776541 14556655443
Q ss_pred CcccCCCCCCCCCCCcCCccceehhchHHHHHHHHHHHHHh
Q 005811 421 SGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLR 461 (676)
Q Consensus 421 aGELRYPSYp~~~GW~yPGiGEFQCYDkymlasLk~aA~~~ 461 (676)
+=|. .|--+|++..++-.=+-+-..+-++|++.
T Consensus 175 ---~~y~-----~~~~~p~~~~~~~~~qa~hh~~lA~A~av 207 (460)
T COG2723 175 ---LGYL-----YGGHPPGIVDPKAAYQVAHHMLLAHALAV 207 (460)
T ss_pred ---cccc-----ccccCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 1111 23345777777765566666666666653
No 46
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=75.82 E-value=3 Score=43.81 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEEeeccCC
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGG 334 (676)
...++++.++|+|+|.+.--|+-..--+|..|. +-+++++++-+++ + ....|-||+
T Consensus 174 ~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-----~~ilh~cG~ 232 (326)
T cd03307 174 IEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-----PTILHICGN 232 (326)
T ss_pred HHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-----CcEEEECCC
Confidence 345566678899999998888844323677777 9999999999997 2 233588974
No 47
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=75.81 E-value=8.4 Score=40.64 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=54.3
Q ss_pred CccEEEEeece---eecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 005811 248 YIPVYVMLANH---VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (676)
Q Consensus 248 ~vpVyVMLPLd---~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlq 324 (676)
.+||+||+=-- .+-++ .+-+.|..+++.+|++|+|||.+= +.- .+++.|...-++|.+.++ ||++-
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~---~E~~~M~~di~~~~~~GadGvV~G----~L~--~dg~vD~~~~~~Li~~a~--~~~vT 119 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSD---GEFAAMLEDIATVRELGFPGLVTG----VLD--VDGHVDMPRMRKIMAAAG--PLAVT 119 (248)
T ss_pred CCCeEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHcCCCEEEEe----eEC--CCCCcCHHHHHHHHHHhc--CCceE
Confidence 48999998442 22221 245789999999999999999874 333 488999999999999985 67775
Q ss_pred EEEEeecc
Q 005811 325 VVMAFHEY 332 (676)
Q Consensus 325 vVmSFHqC 332 (676)
-=+.|-.|
T Consensus 120 FHRAfD~~ 127 (248)
T PRK11572 120 FHRAFDMC 127 (248)
T ss_pred Eechhhcc
Confidence 55555433
No 48
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=75.67 E-value=11 Score=39.62 Aligned_cols=102 Identities=15% Similarity=0.021 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCcceEEEee-eeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChh-
Q 005811 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW- 347 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~W- 347 (676)
++++..+++|..+|++.|.+|= -|+..-...+.+....+-+++.+.+.+.+...++ ..|-|.||....-...-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHHH
Confidence 5788899999999999999986 5554332113345556667777777765655554 46999999743322222333
Q ss_pred HHhh-hccCCCeeeecCCCCc--ccCccc
Q 005811 348 VMEI-GKGNQDIFFTDREGRR--NTECLS 373 (676)
Q Consensus 348 V~e~-g~~npDIfytDr~G~r--n~EyLS 373 (676)
+++. .+...|.++-|-...+ +-|.|.
T Consensus 233 i~~~l~~~~vd~~~le~~~~~~~~~~~l~ 261 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNSRAGGLEPLK 261 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCCCCcchHHHH
Confidence 2332 2455787776665433 444443
No 49
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=74.72 E-value=11 Score=37.54 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=69.6
Q ss_pred ceeecCCCccc-CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCC
Q 005811 257 NHVINNFCQLV-DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (676)
Q Consensus 257 Ld~V~~~~~l~-~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGN 335 (676)
+-+...+|... +.+.-..-|+.+-.+|+|.|.|+++ .+.-+.......+. -+..+|+|+|-..+
T Consensus 61 ~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~--~~~~iI~S~H~f~~- 125 (224)
T PF01487_consen 61 VRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARK--GGTKIILSYHDFEK- 125 (224)
T ss_dssp --BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHH--TTSEEEEEEEESS--
T ss_pred ecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhh--CCCeEEEEeccCCC-
Confidence 33445555553 3445555667777788998888765 12223323334444 45568999995442
Q ss_pred CCCCccccCChh--HHhhhccCCCeeeecCCCCcccCccccccccccc-cCCCchHHHHHHHHHHHHHHHhhhhcccceE
Q 005811 336 DSGDAWISLPQW--VMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLIC 412 (676)
Q Consensus 336 VGD~~~IPLP~W--V~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pV-l~GRTpiq~Y~DFMrSFr~~F~~~l~~~vI~ 412 (676)
-|.| +.+. -.++..+|+|-+.+ ...+++-+... +..|..++.... .+.
T Consensus 126 --------tp~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~~---~~p 176 (224)
T PF01487_consen 126 --------TPSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREEP---DIP 176 (224)
T ss_dssp ----------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHHT---SSE
T ss_pred --------CCCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhcc---CCc
Confidence 3444 2221 13445677786665 35566666655 556666666652 367
Q ss_pred EEEecccCCccc
Q 005811 413 AVEIGLGPSGEL 424 (676)
Q Consensus 413 eI~VGLGPaGEL 424 (676)
-|-++||+.|.+
T Consensus 177 ~i~~~MG~~G~~ 188 (224)
T PF01487_consen 177 VIAISMGELGRI 188 (224)
T ss_dssp EEEEEETGGGHH
T ss_pred EEEEEcCCCchh
Confidence 789999999964
No 50
>PLN02361 alpha-amylase
Probab=74.10 E-value=10 Score=42.23 Aligned_cols=67 Identities=9% Similarity=0.163 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccc-------------hhHHHHHHHHHHcCCcEEEEEEe-ecc
Q 005811 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-------------SGYRELFNIIREFNLKVQVVMAF-HEY 332 (676)
Q Consensus 267 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW-------------sgY~~L~~mvr~~GLKlqvVmSF-HqC 332 (676)
+-++.|.+.|..||++||++|-+.- +.|..++.-|+- ..+++|++.+++.|+||.+=+-+ |-|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P---~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~ 102 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPP---PSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRV 102 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCC---CCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccccc
Confidence 3579999999999999999998765 234444444443 35899999999999999765555 777
Q ss_pred CCCC
Q 005811 333 GAND 336 (676)
Q Consensus 333 GGNV 336 (676)
|..-
T Consensus 103 g~~~ 106 (401)
T PLN02361 103 GTTQ 106 (401)
T ss_pred CCCC
Confidence 7543
No 51
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.35 E-value=3.2 Score=38.81 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=36.8
Q ss_pred HHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 005811 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 276 L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVm 327 (676)
|+.+|++|+++|++.+|+..-.... =....++.+++++.||++..+-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-----~~~~~~~~~~~~~~gl~i~~~~ 47 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-----DDEAEELRRLLEDYGLKIASLH 47 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-----hHHHHHHHHHHHHcCCeEEEEe
Confidence 6889999999999999887544311 3467899999999999965543
No 52
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.16 E-value=6.6 Score=39.86 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=46.5
Q ss_pred eeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchh--HHHHHHHHHHcCCcEEEE
Q 005811 255 LANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG--YRELFNIIREFNLKVQVV 326 (676)
Q Consensus 255 LPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg--Y~~L~~mvr~~GLKlqvV 326 (676)
+||++... .++..-.+...++.+|.+|.+||++++. + .......++|+. -++|-+++++.||++..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~--~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVD-E--SDERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecC-c--cccchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 45665532 2444457889999999999999999642 0 001133456765 567899999999999865
No 53
>PRK08508 biotin synthase; Provisional
Probab=72.73 E-value=19 Score=37.60 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=40.4
Q ss_pred cCHHHHHHHHHHHHhcCcceEEE-eeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 005811 267 VDPELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 267 ~~~~al~~~L~~LK~~GVdGVmv-DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVm 327 (676)
.+++.+.+..+.+++.|+..|.+ +-+= ++....+.+|.++++.||+.++++.+..
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~------~~~~~~~e~~~ei~~~ik~~~p~l~i~~ 95 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGR------GLDDKKLEYVAEAAKAVKKEVPGLHLIA 95 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccC------CCCcccHHHHHHHHHHHHhhCCCcEEEe
Confidence 36688888889999999998865 2221 2234578899999999999887665433
No 54
>PHA00442 host recBCD nuclease inhibitor
Probab=71.41 E-value=3.7 Score=34.68 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHc
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~ 319 (676)
..-|++|++.||| ||+||.+..+|+-+.
T Consensus 29 ~~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 29 NEFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred hHHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 3457888889987 999999999998653
No 55
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=70.61 E-value=48 Score=35.05 Aligned_cols=115 Identities=7% Similarity=0.194 Sum_probs=68.2
Q ss_pred cCHHHHHHHHHHHHhcC--cceEEEeeeeeeeccCCCcccc-----chhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCC
Q 005811 267 VDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYA-----WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (676)
Q Consensus 267 ~~~~al~~~L~~LK~~G--VdGVmvDVWWGiVE~~~P~~Yd-----WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~ 339 (676)
.+.+.|..-++.+++.| +|.|.+|+-|-- .-+.|. |-.-+++++-+++.|+|+.+++.=+-+-
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~------ 96 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT------ 96 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC------
Confidence 46788999999999988 789999986632 123333 4456788888999999876666543221
Q ss_pred ccccCChhHHhhhccCCCeeeecCCCCcccCccc-cccccccc--cCCCchHHHHHHHHHHHH
Q 005811 340 AWISLPQWVMEIGKGNQDIFFTDREGRRNTECLS-WGVDKERV--LNGRTGIEVYFDFMRSFR 399 (676)
Q Consensus 340 ~~IPLP~WV~e~g~~npDIfytDr~G~rn~EyLS-lg~D~~pV--l~GRTpiq~Y~DFMrSFr 399 (676)
-.=+.+++.+ .+++.++..|. ..++. +|....-+ +.-.-..+.|.+-++.+.
T Consensus 97 -----~s~~~~e~~~-~g~~vk~~~g~--~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 97 -----DSENFREAVE-KGYLVSEPSGD--IPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred -----CCHHHHhhhh-CCeEEECCCCC--CCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 1112333333 47888998882 23432 22222111 233344556655555444
No 56
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=70.05 E-value=4.9 Score=42.27 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEEeeccC
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYG 333 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCG 333 (676)
...++++..+|||+|.+.-=|+--.--+|..|. +-+++++++-+++. ...+|-||
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~------~~ilH~cG 240 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL------PTILHICG 240 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC------CcEEEECC
Confidence 445666778999999887767532223455555 99999999999875 23468897
No 57
>smart00642 Aamy Alpha-amylase domain.
Probab=68.58 E-value=19 Score=35.10 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=49.2
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeecc-CCCccc-------------cchhHHHHHHHHHHcCCcEEEEEEeec
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEG-WNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~-~~P~~Y-------------dWsgY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
.-+.+.+.+.|..||++||++|-+---+--.+. .....| .+...++|.+.+++.|+||..=+-+--
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 457899999999999999999976443222210 001111 346688999999999999988888877
Q ss_pred cCC
Q 005811 332 YGA 334 (676)
Q Consensus 332 CGG 334 (676)
|+.
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 765
No 58
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=65.22 E-value=15 Score=37.08 Aligned_cols=53 Identities=15% Similarity=0.408 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeccCCCccc--cc--hhHHHHHHHHHHcCCcEEEEEEee
Q 005811 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY--AW--SGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 271 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y--dW--sgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
.+...|+.++++|+++|++ |+- .+..| ++ ..=++|.+.+.+.||++..+...|
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~ 70 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET 70 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecCcc
Confidence 5899999999999999998 331 11111 12 245778889999999986544444
No 59
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=64.61 E-value=8.7 Score=43.11 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=39.7
Q ss_pred HHHHHHHHHHH-hcCcceEEEeeeeee------e---ccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 270 ELIRQEISHMK-ALNVDGVIVNCWWGI------V---EGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 270 ~al~~~L~~LK-~~GVdGVmvDVWWGi------V---E~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
..++.+|+.++ .+|+..|-+ ||-+ + +..+...|||+.-+++++.+.+.|||..+-|+|=
T Consensus 39 ~~~q~~l~~~~~~~gf~yvR~--h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~ 107 (486)
T PF01229_consen 39 ADWQEQLRELQEELGFRYVRF--HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFM 107 (486)
T ss_dssp HHHHHHHHHHHCCS--SEEEE--S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB
T ss_pred HHHHHHHHHHHhccCceEEEE--EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEec
Confidence 56788888887 699999864 4443 2 1122234999999999999999999999999983
No 60
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=64.46 E-value=6.1 Score=29.38 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCcceEEEe
Q 005811 273 RQEISHMKALNVDGVIVN 290 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvD 290 (676)
.+..++|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345688888999999997
No 61
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=63.72 E-value=14 Score=37.70 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccch--hHHHHHHHHHHcCCcEEEE
Q 005811 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS--GYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 269 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs--gY~~L~~mvr~~GLKlqvV 326 (676)
.-.+...|+.++++|.+||++.++.. - ..+..++|+ .-.++-+++++.||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET-D--DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc-c--chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 45688999999999999999965432 1 123444554 4567888899999999765
No 62
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=63.50 E-value=5.1 Score=41.94 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=58.7
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeccCCCc---cccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHh
Q 005811 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVME 350 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVWWGiVE~~~P~---~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e 350 (676)
..++++..+|+|+|.+-- .-..--+|. +|-+-+|++|++.|++.|.+ ..-+|-||- .. ++=.++.+
T Consensus 186 ~~~~~~~~~G~d~i~~~d--~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG~-----~~-~~~~~l~~ 254 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFD--SSGSLISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICGN-----TT-PILDDLAD 254 (343)
T ss_dssp HHHHHHHHTT-SEEEEEE--TTGGGS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETTH-----G--GGHHHHHT
T ss_pred HHHHHHHHhCCCcccccc--cccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECCc-----hH-HHHHHHHh
Confidence 345667789999995433 222222344 77899999999999999985 556899982 11 12223333
Q ss_pred hhccCCCeeeecCCCCcccCcc-cc--------ccccccccCCCchHHHHHHHHHHHH
Q 005811 351 IGKGNQDIFFTDREGRRNTECL-SW--------GVDKERVLNGRTGIEVYFDFMRSFR 399 (676)
Q Consensus 351 ~g~~npDIfytDr~G~rn~EyL-Sl--------g~D~~pVl~GRTpiq~Y~DFMrSFr 399 (676)
...|++-.|..=.-. |.. .+ ++|..-+|. -|+-+++..--+-..
T Consensus 255 ---~g~d~~~~~~~~~~~-~~~~~~~~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 255 ---LGADVLSVDEKVDLA-EAKRKLGDKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIE 307 (343)
T ss_dssp ---SS-SEEEE-TTS-HH-HHHHHHTTSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHH
T ss_pred ---cCCCEEEEcCCCCHH-HHHHHhCCCeEEECCCCcccccc-CCHHHHHHHHHHHHH
Confidence 335555444332110 111 12 255544566 677777765555444
No 63
>PRK09875 putative hydrolase; Provisional
Probab=63.22 E-value=1.8e+02 Score=31.21 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=47.9
Q ss_pred CCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005811 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (676)
Q Consensus 263 ~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 342 (676)
+..+.+.+.....|+.+|++|+.-| ||+ .|.-+ =..=..|.++.++.|+.|.+.=-||.- .
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~--------T~~g~-GRd~~~l~~is~~tgv~Iv~~TG~y~~---------~ 87 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEM--------TNRYM-GRNAQFMLDVMRETGINVVACTGYYQD---------A 87 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-Eec--------CCCcc-CcCHHHHHHHHHHhCCcEEEcCcCCCC---------c
Confidence 4567889999999999999999887 443 22211 122467888999999777766666631 1
Q ss_pred cCChhHH
Q 005811 343 SLPQWVM 349 (676)
Q Consensus 343 PLP~WV~ 349 (676)
-+|.|+.
T Consensus 88 ~~p~~~~ 94 (292)
T PRK09875 88 FFPEHVA 94 (292)
T ss_pred cCCHHHh
Confidence 3788886
No 64
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=62.42 E-value=17 Score=37.27 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeec---cCCCccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVE---GWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE---~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
+..|+.||++|++.|.+.+= +.-| .-. +..+|..+.+.++.++++|+++.+-|-+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 46788999999999988744 3211 111 2468899999999999999987666555
No 65
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=62.36 E-value=16 Score=37.97 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCcceEEEee-eeeeeccCCCccccchhHHHHHHHHHH-cCCcEEEEEEeeccCC
Q 005811 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFNIIRE-FNLKVQVVMAFHEYGA 334 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~L~~mvr~-~GLKlqvVmSFHqCGG 334 (676)
+.+...+++|+++|++.|.+|= -|...-. + ..++....+++.+.+.+ .|-+ ...|-||+
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~----~~lHic~~ 211 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGD----VEVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCc----eEEEECCC
Confidence 4677889999999999888862 2222211 1 35788888889988876 3322 25699986
No 66
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=61.78 E-value=19 Score=37.03 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=47.2
Q ss_pred CccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 005811 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVm 327 (676)
.+|+.+|.=++.+- ...++.-++.++++||+||.+.-- | + ..-.++++.+++.|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 46788885554432 134677799999999999999411 1 1 256789999999999999999
Q ss_pred Eee
Q 005811 328 AFH 330 (676)
Q Consensus 328 SFH 330 (676)
+-+
T Consensus 137 ~P~ 139 (242)
T cd04724 137 APT 139 (242)
T ss_pred CCC
Confidence 864
No 67
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=61.75 E-value=18 Score=38.17 Aligned_cols=90 Identities=23% Similarity=0.272 Sum_probs=64.7
Q ss_pred CCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 005811 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (676)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv 325 (676)
...+|+.+|.=.+.|-. ..+++-++.+|++||+||.+. .=| +....++.+.+++.||.+..
T Consensus 85 ~~~~pivlm~Y~N~i~~-------~G~e~F~~~~~~aGvdGlIip--------DLP----~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIFQ-------YGIERFFKEAKEAGVDGLIIP--------DLP----PEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp CTSSEEEEEE-HHHHHH-------H-HHHHHHHHHHHTEEEEEET--------TSB----GGGHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEeeccHHhc-------cchHHHHHHHHHcCCCEEEEc--------CCC----hHHHHHHHHHHHHcCCeEEE
Confidence 57799999998876632 467778999999999999874 222 45678999999999999998
Q ss_pred EEEeeccCCCCCCCccccCChhHHhhhccCCC-eeeecCCCC
Q 005811 326 VMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR 366 (676)
Q Consensus 326 VmSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfytDr~G~ 366 (676)
.++=. .-+..+..+.+.-.. |++..+.|.
T Consensus 146 lv~p~------------t~~~Ri~~i~~~a~gFiY~vs~~Gv 175 (259)
T PF00290_consen 146 LVAPT------------TPEERIKKIAKQASGFIYLVSRMGV 175 (259)
T ss_dssp EEETT------------S-HHHHHHHHHH-SSEEEEESSSSS
T ss_pred EECCC------------CCHHHHHHHHHhCCcEEEeeccCCC
Confidence 88764 245677777766667 555577764
No 68
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=61.25 E-value=18 Score=36.30 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 005811 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (676)
Q Consensus 271 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv 325 (676)
.++..|+.+|++|.+||++. + | ++. .-.+|.+++++.||++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~--~-------~--~~~-~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYL--F-------P--YDW-DAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEec--C-------C--ccC-CHHHHHHHHHHcCCeEEE
Confidence 58889999999999999883 2 1 122 257788899999999854
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=60.46 E-value=21 Score=36.04 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeccC-CCccccchh--HHHHHHHHHHcCCcEEEE
Q 005811 271 LIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKYAWSG--YRELFNIIREFNLKVQVV 326 (676)
Q Consensus 271 al~~~L~~LK~~GVdGVmvDVWWGiVE~~-~P~~YdWsg--Y~~L~~mvr~~GLKlqvV 326 (676)
.+...|+.++++|+++|++.+. +.. .....+|+. -++|.+++++.||++..+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 6788999999999999998532 211 123346653 578999999999999865
No 70
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=60.26 E-value=38 Score=35.78 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=67.8
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 005811 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvV 326 (676)
..+|+.+|.=+..|- .-.+++-++.+|++|||||.+.-- | +.-..++++.+++.||++...
T Consensus 90 ~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEEE
Confidence 446888888776553 246788899999999999988632 2 245789999999999999999
Q ss_pred EEeeccCCCCCCCccccCChhHHhhhccCCC-eeeecCCCCccc
Q 005811 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRRNT 369 (676)
Q Consensus 327 mSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfytDr~G~rn~ 369 (676)
++-+ .-+..+..+.+.-.. |++..+.|..-.
T Consensus 151 v~Pt------------T~~eri~~i~~~a~gFIY~vS~~GvTG~ 182 (263)
T CHL00200 151 IAPT------------SSKSRIQKIARAAPGCIYLVSTTGVTGL 182 (263)
T ss_pred ECCC------------CCHHHHHHHHHhCCCcEEEEcCCCCCCC
Confidence 9886 235677777666554 555577776543
No 71
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=57.80 E-value=30 Score=38.45 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
..+..+.+++..|++|+||..+++. .+..+.+..-..+++.+...|+||-..+=++
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~ 70 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKLFFSFDMN 70 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 6688999999999999999999996 3455778888999999999997665555444
No 72
>PLN02229 alpha-galactosidase
Probab=57.65 E-value=20 Score=40.62 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=50.3
Q ss_pred cCHHHHHHHHHH-----HHhcCcceEEEeeeeeeeccCC-------CccccchhHHHHHHHHHHcCCcEEEEEE--eecc
Q 005811 267 VDPELIRQEISH-----MKALNVDGVIVNCWWGIVEGWN-------PQKYAWSGYRELFNIIREFNLKVQVVMA--FHEY 332 (676)
Q Consensus 267 ~~~~al~~~L~~-----LK~~GVdGVmvDVWWGiVE~~~-------P~~YdWsgY~~L~~mvr~~GLKlqvVmS--FHqC 332 (676)
.+.+.|+....+ ||.+|.+-|.||-=|--.++.. |.+|- +|-+.|++.|++.|||+=.... ...|
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGIy~d~G~~TC 155 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGIYSDAGVFTC 155 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEEeccCCCccc
Confidence 367888888887 5999999999987443222222 33444 6899999999999999855443 3578
Q ss_pred CCCCC
Q 005811 333 GANDS 337 (676)
Q Consensus 333 GGNVG 337 (676)
+|+.|
T Consensus 156 ~~~pG 160 (427)
T PLN02229 156 QVRPG 160 (427)
T ss_pred CCCCC
Confidence 77655
No 73
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=56.73 E-value=30 Score=36.30 Aligned_cols=87 Identities=15% Similarity=0.349 Sum_probs=59.0
Q ss_pred ccCHHHHHHHHHHHHhcC--cceEEEee-eeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEEeeccCCCCC
Q 005811 266 LVDPELIRQEISHMKALN--VDGVIVNC-WWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~G--VdGVmvDV-WWGiVE~~~P~~YdWs-----gY~~L~~mvr~~GLKlqvVmSFHqCGGNVG 337 (676)
..+.+.+.+-++.+|+.| +|.|.+|. |+ ...+-+.|+|. .-+++++-+++.|+|+..++ |-+ |+
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~---~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~--~P~---i~ 91 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM---KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWI--NPY---IA 91 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc---cCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEe--cCC---CC
Confidence 467889999999999999 89999998 55 21111245555 68899999999999955544 432 22
Q ss_pred CCccccCChhHHhhhccCCCeeeecCCCCc
Q 005811 338 GDAWISLPQWVMEIGKGNQDIFFTDREGRR 367 (676)
Q Consensus 338 D~~~IPLP~WV~e~g~~npDIfytDr~G~r 367 (676)
.+. | +.++++ ..|.|.++..|..
T Consensus 92 ~~~----~--~~~e~~-~~g~~v~~~~g~~ 114 (308)
T cd06593 92 QKS----P--LFKEAA-EKGYLVKKPDGSV 114 (308)
T ss_pred CCc----h--hHHHHH-HCCeEEECCCCCe
Confidence 121 2 334443 3588998887764
No 74
>PLN02389 biotin synthase
Probab=56.12 E-value=24 Score=38.99 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCcceEEEeee--eeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 005811 273 RQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVW--WGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlq 324 (676)
+.+|++||++|+|.+.+.+= ...+..-.+ .-+|..+.+..+.+++.|+++-
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~s~e~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TRSYDDRLETLEAVREAGISVC 230 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CCCHHHHHHHHHHHHHcCCeEe
Confidence 56789999999999988421 111111112 2389999999999999999873
No 75
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=55.99 E-value=11 Score=41.42 Aligned_cols=111 Identities=14% Similarity=0.357 Sum_probs=74.8
Q ss_pred eeeeccCCCccccchhHHHHHHHHHHcCCcE--EEEEEeeccCCCCCCCccccCChhHHhhhccCCCeeeecCCCCcccC
Q 005811 293 WGIVEGWNPQKYAWSGYRELFNIIREFNLKV--QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTE 370 (676)
Q Consensus 293 WGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl--qvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~G~rn~E 370 (676)
|...|. .++.|+|..-+.+++.+|+.||++ +..+.-|| .|.|+.. |+
T Consensus 69 we~i~p-~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~q------------~P~W~~~-----------~e------- 117 (345)
T COG3693 69 WEAIEP-ERGRFNFEAADAIANFARKHNMPLHGHTLVWHSQ------------VPDWLFG-----------DE------- 117 (345)
T ss_pred cccccC-CCCccCccchHHHHHHHHHcCCeeccceeeeccc------------CCchhhc-----------cc-------
Confidence 999998 799999999999999999999987 44554443 7888752 11
Q ss_pred ccccccccccccCCCchHHHHHHHHHHHHHHHhhhh-cccceEEEEecccCCcccCCCCCCCCCCCcCCccceehhchHH
Q 005811 371 CLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLF-VAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRY 449 (676)
Q Consensus 371 yLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l-~~~vI~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDky 449 (676)
+.+.--++++++.+..--.+|.+-+ .=+||.|+- --.| +|.++ -|..-|.|. .|
T Consensus 118 -----------~~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~v-dd~g-------~~R~s-~w~~~~~gp-----d~ 172 (345)
T COG3693 118 -----------LSKEALAKMVEEHIKTVVGRYKGSVASWDVVNEAV-DDQG-------SLRRS-AWYDGGTGP-----DY 172 (345)
T ss_pred -----------cChHHHHHHHHHHHHHHHHhccCceeEEEeccccc-CCCc-------hhhhh-hhhccCCcc-----HH
Confidence 1222336788888777777777622 112555542 2222 44443 266556664 89
Q ss_pred HHHHHHHHHH
Q 005811 450 LQQSLRKAAK 459 (676)
Q Consensus 450 mlasLk~aA~ 459 (676)
+.-+|+.|.+
T Consensus 173 I~~aF~~Are 182 (345)
T COG3693 173 IKLAFHIARE 182 (345)
T ss_pred HHHHHHHHHh
Confidence 9999998877
No 76
>PRK09989 hypothetical protein; Provisional
Probab=55.53 E-value=28 Score=35.20 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 005811 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (676)
Q Consensus 271 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv 325 (676)
-|...|+++|++|.+||++-. +..+++ .++.+++++.||++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~~---~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYST---LQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCCH---HHHHHHHHHcCCcEEE
Confidence 578899999999999999932 222443 5788889999999763
No 77
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=55.52 E-value=25 Score=40.90 Aligned_cols=56 Identities=9% Similarity=0.130 Sum_probs=42.0
Q ss_pred CHHHHHHHH-HHHHhcCcceEEE-eeeeeeeccCCCccccch-----------------hHHHHHHHHHHcCCcEEEEEE
Q 005811 268 DPELIRQEI-SHMKALNVDGVIV-NCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVVMA 328 (676)
Q Consensus 268 ~~~al~~~L-~~LK~~GVdGVmv-DVWWGiVE~~~P~~YdWs-----------------gY~~L~~mvr~~GLKlqvVmS 328 (676)
+.++|...| ..||++||+.|.+ +|.. .|...+|- ..++|++.+.+.|+||..=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e------~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAE------HPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccc------CCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 358888886 9999999999998 7642 12223343 378999999999999876555
Q ss_pred e
Q 005811 329 F 329 (676)
Q Consensus 329 F 329 (676)
|
T Consensus 228 ~ 228 (613)
T TIGR01515 228 P 228 (613)
T ss_pred c
Confidence 5
No 78
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=53.87 E-value=30 Score=36.39 Aligned_cols=65 Identities=12% Similarity=0.259 Sum_probs=43.5
Q ss_pred CcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcc---ccch---hHHHHHHHHHHcCCc-----EEEEEEeec
Q 005811 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWS---GYRELFNIIREFNLK-----VQVVMAFHE 331 (676)
Q Consensus 264 ~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~---YdWs---gY~~L~~mvr~~GLK-----lqvVmSFHq 331 (676)
++|.-...+++-.++|+ .|+..|++|||=|-- ..|-. +.+. ..+++.+.|++...+ |...|--|.
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg~d--gePvV~Hg~tlts~i~f~dv~~~I~~~AF~~S~yPvIlslE~Hc 99 (229)
T cd08627 24 DQFSSESSLEAYARCLR-MGCRCIELDCWDGPD--GMPVIYHGHTLTTKIKFSDVLHTIKEHAFVTSEYPIILSIEDHC 99 (229)
T ss_pred CccCCcccHHHHHHHHH-hCCCEEEEEeecCCC--CCEEEEeCCcCCCceEHHHHHHHHHHhhccCCCCCEEEEEcccC
Confidence 56666667777777777 899999999997621 11221 1222 368999999998875 455555563
No 79
>PLN02808 alpha-galactosidase
Probab=53.57 E-value=23 Score=39.53 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=45.9
Q ss_pred cCHHHHHHHHHH-----HHhcCcceEEEeeeeeeeccCCCccccc------hhHHHHHHHHHHcCCcEEEEEE
Q 005811 267 VDPELIRQEISH-----MKALNVDGVIVNCWWGIVEGWNPQKYAW------SGYRELFNIIREFNLKVQVVMA 328 (676)
Q Consensus 267 ~~~~al~~~L~~-----LK~~GVdGVmvDVWWGiVE~~~P~~YdW------sgY~~L~~mvr~~GLKlqvVmS 328 (676)
.+.+.|.....+ ||.+|.+-|.||-=|-..++...+..-+ +|-+.|++.|++.|||+=....
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~ 118 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSD 118 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEec
Confidence 367888888887 6999999999986665444433332211 6899999999999999966553
No 80
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=53.50 E-value=19 Score=36.85 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=48.0
Q ss_pred CCCccEEEEeec---eeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCc
Q 005811 246 TPYIPVYVMLAN---HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLK 322 (676)
Q Consensus 246 ~~~vpVyVMLPL---d~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLK 322 (676)
...+||+||+=- |.+-++ .+-+.|..+++.+|++|+|||.+ |..- .+++.|...=++|.+.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~Vf----G~L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVF----GALT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEE----EeEC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 467899999854 222222 24478999999999999999987 4444 478899999999999987 666
Q ss_pred EEEEEEe
Q 005811 323 VQVVMAF 329 (676)
Q Consensus 323 lqvVmSF 329 (676)
+.-=++|
T Consensus 117 ~tFHRAf 123 (201)
T PF03932_consen 117 VTFHRAF 123 (201)
T ss_dssp EEE-GGG
T ss_pred EEEeCcH
Confidence 6433344
No 81
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=53.20 E-value=15 Score=38.80 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCcceEEE-eeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhH
Q 005811 273 RQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmv-DVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV 348 (676)
....+++.++|+|+|.+ |- |+- --+|.+|+ |-++++|++-+++.|-. .+| .|-|||+. ++-.++
T Consensus 180 ~~~~~~~ieaGad~i~i~d~-~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~i--lh~cg~~~------~~~~~~ 247 (335)
T cd00717 180 IEYLKAQIEAGAQAVQIFDS-WAG--ALSPEDFEEFVLPYLKRIIEEVKKRLPG-VPV--ILFAKGAG------GLLEDL 247 (335)
T ss_pred HHHHHHHHHhCCCEEEEeCc-ccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCC-CCE--EEEcCCCH------HHHHHH
Confidence 33445556799999963 43 442 24577777 99999999999998311 123 56677431 455555
Q ss_pred HhhhccCCCeeeecCC
Q 005811 349 MEIGKGNQDIFFTDRE 364 (676)
Q Consensus 349 ~e~g~~npDIfytDr~ 364 (676)
.+. ..|++-.|..
T Consensus 248 ~~~---~~~~~s~d~~ 260 (335)
T cd00717 248 AQL---GADVVGLDWR 260 (335)
T ss_pred Hhc---CCCEEEeCCC
Confidence 543 2466555543
No 82
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=52.04 E-value=49 Score=34.99 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=46.2
Q ss_pred ecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcc---ccchhHHHHHHHHHHcCCcEEE
Q 005811 260 INNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWSGYRELFNIIREFNLKVQV 325 (676)
Q Consensus 260 V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~---YdWsgY~~L~~mvr~~GLKlqv 325 (676)
|.-=|.+.+.+++..--++||++|+..|.+-.|= =+.+|.. +...+++.|.+.+++.||.+..
T Consensus 31 iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~k---pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t 96 (266)
T PRK13398 31 IAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFK---PRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT 96 (266)
T ss_pred EEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeec---CCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE
Confidence 3333667899999999999999999977777653 1122221 2266899999999999997643
No 83
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=50.90 E-value=36 Score=39.18 Aligned_cols=61 Identities=11% Similarity=0.309 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchh-----------------HHHHHHHHHHcCCcEEEEEEee
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----------------YRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg-----------------Y~~L~~mvr~~GLKlqvVmSFH 330 (676)
+.++|...|..||++||++|.+-= |.| .|..++|.| .++|++.+.+.|++|..=+-|.
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 558999999999999999996531 222 244566644 8999999999999997766675
Q ss_pred ccC
Q 005811 331 EYG 333 (676)
Q Consensus 331 qCG 333 (676)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 454
No 84
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=49.92 E-value=32 Score=34.83 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 005811 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (676)
Q Consensus 271 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 323 (676)
.++..|++++++|.+||++ |+ |.. ...+++.+++++.||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl---~~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEF---MF------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEE---cC------CCC---CCHHHHHHHHHHcCCcE
Confidence 4888899999999999999 22 111 24778888999999997
No 85
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=49.56 E-value=65 Score=31.74 Aligned_cols=60 Identities=27% Similarity=0.484 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCC--Cccc-cc-------hhHHHHHHHHHHcCCcEEEEEEe
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWN--PQKY-AW-------SGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~--P~~Y-dW-------sgY~~L~~mvr~~GLKlqvVmSF 329 (676)
+++.-++.|+.||++|++-|.+- |.-.+... |-++ ++ .-...+++.+.+.|+||.+=|-|
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 56788899999999999999876 44433322 3333 11 14678899999999999875544
No 86
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=48.88 E-value=40 Score=37.85 Aligned_cols=68 Identities=9% Similarity=0.035 Sum_probs=48.4
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccc---c-------------------chhHHHHHHHHHHcCCcEE
Q 005811 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---A-------------------WSGYRELFNIIREFNLKVQ 324 (676)
Q Consensus 267 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y---d-------------------WsgY~~L~~mvr~~GLKlq 324 (676)
..++.|...|..||.+||++|-+--.+--........| | ....++|++.+++.|+||.
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 34788999999999999999977553321111011223 2 2347899999999999999
Q ss_pred EEEEeeccCC
Q 005811 325 VVMAFHEYGA 334 (676)
Q Consensus 325 vVmSFHqCGG 334 (676)
+=+-|--|++
T Consensus 99 ~D~V~NH~~~ 108 (479)
T PRK09441 99 ADVVLNHKAG 108 (479)
T ss_pred EEECcccccC
Confidence 8888877775
No 87
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.70 E-value=58 Score=34.04 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=47.7
Q ss_pred CccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 005811 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVm 327 (676)
.+|+..|+=.+.|- .-.+++-++.+|++||+||.+.- | | ...-.++.+.+++.||++..++
T Consensus 87 ~~plv~m~Y~Npi~-------~~G~e~f~~~~~~aGvdgviipD-----l---p----~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 87 NIPIGLLTYYNLIF-------RKGVEEFYAKCKEVGVDGVLVAD-----L---P----LEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CCCEEEEEeccHHh-------hhhHHHHHHHHHHcCCCEEEECC-----C---C----hHHHHHHHHHHHHCCCcEEEEE
Confidence 46766766554432 24778889999999999998872 2 2 2345789999999999998888
Q ss_pred Eee
Q 005811 328 AFH 330 (676)
Q Consensus 328 SFH 330 (676)
+-+
T Consensus 148 ~P~ 150 (256)
T TIGR00262 148 APN 150 (256)
T ss_pred CCC
Confidence 765
No 88
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=48.47 E-value=53 Score=35.99 Aligned_cols=89 Identities=11% Similarity=0.222 Sum_probs=55.5
Q ss_pred ccCHHHHHHHHHHHHhcC--cceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEEeeccCCCCCC
Q 005811 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~G--VdGVmvDVWWGiVE~~~P~~YdWs-----gY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD 338 (676)
..+.+.+.+-++.+++.| +|++.+|.||+--. +.|.|. .-+++++.+++.|+|+.+.+.=+-+- ..+
T Consensus 39 ~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~--~~~ 112 (441)
T PF01055_consen 39 YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN--DSP 112 (441)
T ss_dssp BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET--TTT
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccCC--CCC
Confidence 456888889898888754 79999999998732 244554 57999999999999966555443222 111
Q ss_pred CccccCChhHHhhhccCCCeeeecCCCCc
Q 005811 339 DAWISLPQWVMEIGKGNQDIFFTDREGRR 367 (676)
Q Consensus 339 ~~~IPLP~WV~e~g~~npDIfytDr~G~r 367 (676)
.- . ..+.+++ .|+++++.+|..
T Consensus 113 ----~~-~-~~~~~~~-~~~~v~~~~g~~ 134 (441)
T PF01055_consen 113 ----DY-E-NYDEAKE-KGYLVKNPDGSP 134 (441)
T ss_dssp ----B--H-HHHHHHH-TT-BEBCTTSSB
T ss_pred ----cc-h-hhhhHhh-cCceeecccCCc
Confidence 00 1 2223333 388999999944
No 89
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=48.12 E-value=30 Score=38.93 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=42.2
Q ss_pred HHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChh
Q 005811 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (676)
Q Consensus 275 ~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~W 347 (676)
.|+.+|++||+||....-- + .....+.=..-+++-++|.++||+|-||=|+ +|-++...-+|.+
T Consensus 15 ~l~~irQ~G~~giV~al~~-~---p~gevW~~~~i~~~k~~ie~~GL~~~vvEs~-----pv~e~Ik~g~~~r 78 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I---PNGEVWEKEEIRKRKEYIESAGLHWSVVESV-----PVHEAIKTGTGNY 78 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C---CCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC-----CccHHHHcCCCcH
Confidence 4788999999999976521 1 1112233344677888999999999998766 3444544455554
No 90
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=47.72 E-value=38 Score=35.25 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEE--eeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 005811 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV--NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (676)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 323 (676)
...+||++..--..+ +..-...+..+++|+|+||+ +.|+...+.+ -..+|++|++.+ ++.|
T Consensus 65 ~~~~~vi~gv~~~s~---------~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~-----i~~~~~~i~~~~---~~pi 127 (285)
T TIGR00674 65 NGRVPVIAGTGSNAT---------EEAISLTKFAEDVGADGFLVVTPYYNKPTQEG-----LYQHFKAIAEEV---DLPI 127 (285)
T ss_pred CCCCeEEEeCCCccH---------HHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHH-----HHHHHHHHHhcC---CCCE
Q ss_pred EEEEEeeccCCCCCCCccccCChhHHhhhccCCC-eeeecCCC--CcccCccccccccccccCC
Q 005811 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREG--RRNTECLSWGVDKERVLNG 384 (676)
Q Consensus 324 qvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfytDr~G--~rn~EyLSlg~D~~pVl~G 384 (676)
...-.=..+| ++|+.-+++.-.++|. +.++|-+| .+-.+++...-|++.||.|
T Consensus 128 ~lYn~P~~tg--------~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G 183 (285)
T TIGR00674 128 ILYNVPSRTG--------VSLYPETVKRLAEEPNIVAIKEATGNLERISEIKAIAPDDFVVLSG 183 (285)
T ss_pred EEEECcHHhc--------CCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEC
No 91
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=47.07 E-value=21 Score=37.76 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=45.4
Q ss_pred HHHHHHHhcCcceEE-EeeeeeeeccCCCcccc---chhHHHHHHHHHHc-CCcEEEEEEeeccCCCCCCCccccCChhH
Q 005811 274 QEISHMKALNVDGVI-VNCWWGIVEGWNPQKYA---WSGYRELFNIIREF-NLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (676)
Q Consensus 274 ~~L~~LK~~GVdGVm-vDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~-GLKlqvVmSFHqCGGNVGD~~~IPLP~WV 348 (676)
..++++.++|+|+|. .|- |+ .-=+|.+|+ |-+.++|++-+++. |- .+| .|-|||. . ++-.|+
T Consensus 184 ~~~~~~~eaGad~i~i~d~-~~--~~lsp~~f~ef~~p~~k~i~~~i~~~~~~--~~i--lh~cg~~----~--~~~~~~ 250 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDS-WA--GALSPEDFEEFVLPYLKKIIEEVKARLPN--VPV--ILFAKGA----G--HLLEEL 250 (338)
T ss_pred HHHHHHHHcCCCEEEEECC-cc--ccCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCE--EEEeCCc----H--HHHHHH
Confidence 444556679999987 444 44 234577777 99999999999986 21 133 4557643 1 344444
Q ss_pred HhhhccCCCeeeecC
Q 005811 349 MEIGKGNQDIFFTDR 363 (676)
Q Consensus 349 ~e~g~~npDIfytDr 363 (676)
.+ ...|++-.|.
T Consensus 251 ~~---~~~~~~s~d~ 262 (338)
T TIGR01464 251 AE---TGADVVGLDW 262 (338)
T ss_pred Hh---cCCCEEEeCC
Confidence 43 3346665554
No 92
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=47.01 E-value=54 Score=37.48 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=49.5
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCC-Ccccc-------------chhHHHHHHHHHHcCCcEEEEEEeec
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~-P~~Yd-------------WsgY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
.-|-++|.+.|..||++||++|-+-=. .|..+ ...|+ ...+++|++.+++.|+||..=+-|.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 457799999999999999999966432 23211 23333 45678999999999999998888877
Q ss_pred cCC
Q 005811 332 YGA 334 (676)
Q Consensus 332 CGG 334 (676)
++.
T Consensus 101 ~s~ 103 (539)
T TIGR02456 101 TSD 103 (539)
T ss_pred CCC
Confidence 653
No 93
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=46.99 E-value=45 Score=38.78 Aligned_cols=65 Identities=20% Similarity=0.386 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCcceEEE-ee---------------eeeeecc--CCC-ccc---------cchhHHHHHHHHHHcC
Q 005811 269 PELIRQEISHMKALNVDGVIV-NC---------------WWGIVEG--WNP-QKY---------AWSGYRELFNIIREFN 320 (676)
Q Consensus 269 ~~al~~~L~~LK~~GVdGVmv-DV---------------WWGiVE~--~~P-~~Y---------dWsgY~~L~~mvr~~G 320 (676)
..++...|..||++||+.|.+ +| -||.-=. -.| ..| -....++|++.+.+.|
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~G 242 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENG 242 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCC
Confidence 457778899999999999976 22 2553210 000 000 0356899999999999
Q ss_pred CcEEEEEEe-eccC
Q 005811 321 LKVQVVMAF-HEYG 333 (676)
Q Consensus 321 LKlqvVmSF-HqCG 333 (676)
++|..=+-| |-|+
T Consensus 243 i~VilDvV~NH~~~ 256 (605)
T TIGR02104 243 IRVIMDVVYNHTYS 256 (605)
T ss_pred CEEEEEEEcCCccC
Confidence 999888888 5443
No 94
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=46.81 E-value=1.3e+02 Score=31.41 Aligned_cols=103 Identities=11% Similarity=0.143 Sum_probs=59.7
Q ss_pred HHHHHHHhcCcceEEEeeeee---eecc-CCCccccchhHHHHHHHHHHcCCcEEE-EEEeeccCCCCCCCccccCChhH
Q 005811 274 QEISHMKALNVDGVIVNCWWG---IVEG-WNPQKYAWSGYRELFNIIREFNLKVQV-VMAFHEYGANDSGDAWISLPQWV 348 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVWWG---iVE~-~~P~~YdWsgY~~L~~mvr~~GLKlqv-VmSFHqCGGNVGD~~~IPLP~WV 348 (676)
..++.++..|++.|.+-+==. +-+. ....+.++.-.+++.+++|+.|+++++ .|.| + |.... =|..|
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~--~-----d~~~~-~~~~~ 153 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF--F-----DGYKA-NPEYA 153 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec--c-----ccCCC-CHHHH
Confidence 457778889999987632100 0011 112345677889999999999999887 3444 2 21122 26666
Q ss_pred Hhhh----ccCCC-eeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHh
Q 005811 349 MEIG----KGNQD-IFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFD 403 (676)
Q Consensus 349 ~e~g----~~npD-IfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~ 403 (676)
.+.. +.-.| |.+.|-.|.- ||.++| ++.+.++.++.
T Consensus 154 ~~~~~~~~~~g~~~i~l~DT~G~~------------------~P~~v~-~lv~~l~~~~~ 194 (273)
T cd07941 154 LATLKAAAEAGADWLVLCDTNGGT------------------LPHEIA-EIVKEVRERLP 194 (273)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCC------------------CHHHHH-HHHHHHHHhCC
Confidence 6542 22223 5556666633 666654 55566666553
No 95
>PRK03906 mannonate dehydratase; Provisional
Probab=46.68 E-value=29 Score=38.71 Aligned_cols=67 Identities=10% Similarity=0.000 Sum_probs=44.8
Q ss_pred HHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHh
Q 005811 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVME 350 (676)
Q Consensus 275 ~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e 350 (676)
.|..+|++||+||.... ..-.....+.-..-+++-++|.++||+|-||=|+ +|-++...-+|.+=.+
T Consensus 15 ~l~~~rQ~G~~~iv~~l----~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~-----pv~~~Ik~g~~~rd~~ 81 (385)
T PRK03906 15 TLEDIRQPGATGIVTAL----HDIPVGEVWPVEEILARKAEIEAAGLEWSVVESV-----PVHEDIKTGTPNRDRY 81 (385)
T ss_pred hHHHHhcCCCCceeecC----CCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC-----CccHHHHcCCCCHHHH
Confidence 47889999999999763 2111123334445678889999999999998776 3445655556655433
No 96
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=46.29 E-value=42 Score=37.45 Aligned_cols=80 Identities=20% Similarity=0.428 Sum_probs=52.1
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEee-eeee----------eccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCC
Q 005811 267 VDPELIRQEISHMKALNVDGVIVNC-WWGI----------VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (676)
Q Consensus 267 ~~~~al~~~L~~LK~~GVdGVmvDV-WWGi----------VE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGN 335 (676)
.+.+.|.+.++++|.+|++-+.+|- |++. -+. .+.+|= +|-+.|++-|++.|||.=.-+..=.+ |
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v--~ 130 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMV--S 130 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EEEEEEETTEE--E
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeEEEEeccccc--c
Confidence 3778999999999999999999976 5432 221 133332 58999999999999998766654332 2
Q ss_pred CCCCccccCChhHHh
Q 005811 336 DSGDAWISLPQWVME 350 (676)
Q Consensus 336 VGD~~~IPLP~WV~e 350 (676)
.+-...---|.|+..
T Consensus 131 ~~S~l~~~hPdw~l~ 145 (394)
T PF02065_consen 131 PDSDLYREHPDWVLR 145 (394)
T ss_dssp SSSCHCCSSBGGBTC
T ss_pred chhHHHHhCccceee
Confidence 233344457888864
No 97
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=46.14 E-value=50 Score=39.76 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCcceEEEee-eeeeeccCCCccccchhHHHHH----HHHHHcCCcEEEEEEeeccCCCCCCCccccC
Q 005811 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELF----NIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~L~----~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 344 (676)
.+++..++.|..+|+.-|-+|- -| .|.-....-+|..|.+.+ +.+-+ |++-...+++|-|=||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 5788889999999999999983 23 454334556787775554 44443 6654556799999988765 1 2
Q ss_pred ChhHHhhhccCCCeeeecCCCCcccCcccccc----cccc---ccCCCchHHHHHHHHHHHHHHHhhhh
Q 005811 345 PQWVMEIGKGNQDIFFTDREGRRNTECLSWGV----DKER---VLNGRTGIEVYFDFMRSFRTEFDDLF 406 (676)
Q Consensus 345 P~WV~e~g~~npDIfytDr~G~rn~EyLSlg~----D~~p---Vl~GRTpiq~Y~DFMrSFr~~F~~~l 406 (676)
|. +.+-+-|.++-+ ..+.+.|-|.... ++.= |.+.++|-=.-.|-++.=-..+..++
T Consensus 654 ~~----i~~l~vD~~~lE-~~rs~~e~L~~~~~~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v 717 (758)
T PRK05222 654 DA----IAALDADVISIE-TSRSDMELLDAFEDFGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVI 717 (758)
T ss_pred HH----HHhCCCCEEEEE-ecCCCchhHHHhhccCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 22 345678877765 2222245444221 2211 23555554444444444444445444
No 98
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=45.89 E-value=43 Score=35.15 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=42.9
Q ss_pred CcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccc-cc-----hhHHHHHHHHHHcCCc-----EEEEEEeec
Q 005811 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-AW-----SGYRELFNIIREFNLK-----VQVVMAFHE 331 (676)
Q Consensus 264 ~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y-dW-----sgY~~L~~mvr~~GLK-----lqvVmSFHq 331 (676)
++|.-...+++-.++|+ .|+..|++|||=|- ...|-.| ++ =..+++.+.|++.+.+ |...|.-|.
T Consensus 24 ~Ql~~ess~eay~~AL~-~GcR~vElDvwdg~--dgePvV~HG~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc 99 (229)
T cd08592 24 DQLSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPIIYHGHTLTSKIKFMDVLKTIKEHAFVTSEYPVILSIENHC 99 (229)
T ss_pred CccCCccCHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCCcCHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 45666666666666776 89999999999872 1123322 12 2468999999998865 344445553
No 99
>PRK00957 methionine synthase; Provisional
Probab=45.77 E-value=83 Score=33.06 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCcceEEEee-eeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhH
Q 005811 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV 348 (676)
+++...+++|+.+|++.|.+|= -|.. +-.++.-..+.++.+.+ ++++. +..|-|| |.. |-|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~~--v~lH~CG-~~~-------~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNVP--VAMHVCG-DVS-------NII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCCc--eEEEECC-CcH-------HHH-
Confidence 5778889999999999888871 2221 22234444444444433 33443 4579995 321 112
Q ss_pred HhhhccCCCeeeecCCCC
Q 005811 349 MEIGKGNQDIFFTDREGR 366 (676)
Q Consensus 349 ~e~g~~npDIfytDr~G~ 366 (676)
-...+.+-|.++-|-.|.
T Consensus 206 ~~l~~~~vd~i~ld~~~~ 223 (305)
T PRK00957 206 DDLLKFNVDILDHEFASN 223 (305)
T ss_pred HHHHhCCCCEEEEeecCC
Confidence 223467778888887654
No 100
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=44.60 E-value=26 Score=38.67 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCcceEEEe----eeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 005811 270 ELIRQEISHMKALNVDGVIVN----CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvD----VWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVm 327 (676)
-.+...+++|+.+|++||++. +-|+..+.+. + .-+++|-+++++.||++..|.
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----~-~~~~~lk~~L~~~GL~v~~v~ 88 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----D-QIVRRFKKALDETGLKVPMVT 88 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----H-HHHHHHHHHHHHhCCeEEEee
Confidence 456788999999999999863 1133322110 1 126789999999999987654
No 101
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=44.14 E-value=20 Score=38.58 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHHHhc-CcceEEEeeeeee-----eccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccC
Q 005811 275 EISHMKAL-NVDGVIVNCWWGI-----VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (676)
Q Consensus 275 ~L~~LK~~-GVdGVmvDVWWGi-----VE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCG 333 (676)
.+++...+ |+|+|.+==.|+- +.++-=.+|-|-+|++|++-+++.| .....+|.||
T Consensus 160 y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~---g~piilH~cG 221 (321)
T cd03309 160 LYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT---SALIVHHSCG 221 (321)
T ss_pred HHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc---CCceEEEeCC
Confidence 33433444 9999998445553 3333334444999999999999984 1235569998
No 102
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=43.64 E-value=68 Score=33.33 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=46.7
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccC-CC--ccccchhHHHHHHHHHHcCCcEEEEEEeeccC
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGW-NP--QKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~-~P--~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCG 333 (676)
+.+++.+++.++.++..|++.|-+=.=++..-.. .+ ..++-...+++++.+++.|++++ .|.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~----~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVA----AHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEE----EEeCC
Confidence 4678999999999999999999776533322111 11 25677888999999999998754 67553
No 103
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=43.19 E-value=7.3 Score=33.23 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=17.4
Q ss_pred ccccccccchHHHhHHHHHh
Q 005811 491 DYDSYYGRFFLNWYAQTLID 510 (676)
Q Consensus 491 ~w~S~YGkFFL~WYS~~Li~ 510 (676)
.|.|.+||-|++-|-..|+.
T Consensus 2 kwltsfgra~iscykslllt 21 (65)
T PF06336_consen 2 KWLTSFGRAFISCYKSLLLT 21 (65)
T ss_pred chHHHHhHHHHHHHHHHHHH
Confidence 48999999999999987764
No 104
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=43.09 E-value=1.4e+02 Score=30.43 Aligned_cols=47 Identities=9% Similarity=0.226 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 272 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
....|+.++++||.+|.+... +...++.+.+++++.+.++.+.+-+|
T Consensus 16 ~~~~~~~~~~~g~~~~i~~~~------------~~~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 16 RPEVLERAREAGVSAIIIVST------------DPEDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp HHHHHHHHHHTTEEEEEEEES------------SHHHHHHHHHHHHHTTTEEEEEE---
T ss_pred HHHHHHHHHHcCCCEEEEcCC------------CHHHhHHHHHHHhcCCCeEEEEecCC
Confidence 567789999999998852211 11455588888899999999999999
No 105
>PLN02692 alpha-galactosidase
Probab=42.90 E-value=42 Score=37.97 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=41.9
Q ss_pred CHHHHHHHHHH-----HHhcCcceEEEee-eeeeeccCC-------CccccchhHHHHHHHHHHcCCcEEEEE
Q 005811 268 DPELIRQEISH-----MKALNVDGVIVNC-WWGIVEGWN-------PQKYAWSGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 268 ~~~al~~~L~~-----LK~~GVdGVmvDV-WWGiVE~~~-------P~~YdWsgY~~L~~mvr~~GLKlqvVm 327 (676)
+.+.|.....+ ||.+|.+-|.+|. |++.. +.. |.+|= +|-+.|++.|++.|||+=...
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~-rd~~G~~~~d~~kFP-~G~k~ladyiH~~GLKfGIy~ 141 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIA-RDEKGNLVPKKSTFP-SGIKALADYVHSKGLKLGIYS 141 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCC-CCCCCCeeeChhhcC-CcHHHHHHHHHHCCCceEEEe
Confidence 56677766664 4889999999987 55533 222 23333 799999999999999986544
No 106
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=42.43 E-value=28 Score=37.19 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCcceEE-EeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEEeeccCCC
Q 005811 272 IRQEISHMKALNVDGVI-VNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (676)
Q Consensus 272 l~~~L~~LK~~GVdGVm-vDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGN 335 (676)
+...++++.++|||+|. .|= |+- --+|.+|+ +-+.++|++-+++.|=. .+|| |-|||.
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~-~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~-~~il--h~cg~~ 249 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDS-WAG--ALSPADYREFVLPYMKRIVAELKREHPD-VPVI--LFGKGA 249 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecC-ccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCC-CCEE--EEcCCc
Confidence 34455666779999997 444 442 24577777 99999999999997411 1333 778743
No 107
>PLN02433 uroporphyrinogen decarboxylase
Probab=42.10 E-value=25 Score=37.67 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=38.0
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcEEEEEEeeccC
Q 005811 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYG 333 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCG 333 (676)
..++++.++|++.|++.==|+- --+|.+|+ |-+.++|++-+++.+-.+ -+..|.||
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG 241 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAG--HLSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANG 241 (345)
T ss_pred HHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCC
Confidence 4445566799998855433443 24566666 999999999999863222 34568898
No 108
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=42.06 E-value=19 Score=36.31 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvV 326 (676)
..+.+...++|+|+|.+=++||.... +...+...--.++.+.|++.|||+.+-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67888999999999999999999876 344455555556667777778887655
No 109
>PLN00196 alpha-amylase; Provisional
Probab=41.84 E-value=76 Score=35.78 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccc--------------hhHHHHHHHHHHcCCcEEEEEEeeccC
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW--------------SGYRELFNIIREFNLKVQVVMAFHEYG 333 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW--------------sgY~~L~~mvr~~GLKlqvVmSFHqCG 333 (676)
+++.|...|..||++||+.|-+.- +.|+.++..|+- ..+++|.+-+++.|+||.+=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P---~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPP---PSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 578999999999999999998764 234444444432 258999999999999998766665555
Q ss_pred C
Q 005811 334 A 334 (676)
Q Consensus 334 G 334 (676)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 4
No 110
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=41.78 E-value=66 Score=37.16 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=47.0
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEE-eeeeeeeccCCCccc-------------cchhHHHHHHHHHHcCCcEEEEEEeec
Q 005811 266 LVDPELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmv-DVWWGiVE~~~P~~Y-------------dWsgY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
.-|.+++.+.|..||.+||++|-+ +|+-.- .....| ....+++|.+.+++.|+||..=+-|--
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~---~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH 105 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVSP---QVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNH 105 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCCC---CCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 457899999999999999999965 443110 001122 234589999999999999988777765
Q ss_pred cC
Q 005811 332 YG 333 (676)
Q Consensus 332 CG 333 (676)
|+
T Consensus 106 ~s 107 (551)
T PRK10933 106 TS 107 (551)
T ss_pred cc
Confidence 54
No 111
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=41.51 E-value=78 Score=37.00 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=61.5
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCC--ccccch---hHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005811 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNP--QKYAWS---GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (676)
Q Consensus 267 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P--~~YdWs---gY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~ 341 (676)
...-..+.+++-||.+||++-..-+-|.-+=+.|. +..|.. +|+.|.+-..+.|++-.|-| ||-
T Consensus 88 D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fHw---------- 156 (524)
T KOG0626|consen 88 DFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FHW---------- 156 (524)
T ss_pred hhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ecC----------
Confidence 34557888999999999999999999999888887 567876 59999999999999998887 563
Q ss_pred ccCChhHHh
Q 005811 342 ISLPQWVME 350 (676)
Q Consensus 342 IPLP~WV~e 350 (676)
-||+|+.+
T Consensus 157 -DlPq~LeD 164 (524)
T KOG0626|consen 157 -DLPQALED 164 (524)
T ss_pred -CCCHHHHH
Confidence 49999964
No 112
>PRK15452 putative protease; Provisional
Probab=41.29 E-value=27 Score=39.46 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=31.3
Q ss_pred CCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEee
Q 005811 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNC 291 (676)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDV 291 (676)
..+++|||.+|. +..+ .+-+.+...|+.|+.+|||||.|-=
T Consensus 57 ~~g~kvyvt~n~--i~~e---~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 57 ALGKKFYVVVNI--APHN---AKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred HcCCEEEEEecC--cCCH---HHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 456899999984 3222 2347788889999999999999854
No 113
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=40.74 E-value=54 Score=35.03 Aligned_cols=65 Identities=20% Similarity=0.403 Sum_probs=43.0
Q ss_pred CCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccc-cch-----hHHHHHHHHHHcCCc-----EEEEEEee
Q 005811 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-AWS-----GYRELFNIIREFNLK-----VQVVMAFH 330 (676)
Q Consensus 263 ~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y-dWs-----gY~~L~~mvr~~GLK-----lqvVmSFH 330 (676)
+++|.-...++.-.++|+ .|+..|++|||=|- ...|-.| ++. ..+++++.|++.+.+ |...|.-|
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcR~vElD~w~g~--~gepvV~Hg~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~H 98 (260)
T cd08597 23 EDQLRGPSSVEGYVRALQ-RGCRCVELDCWDGP--NGEPVIYHGHTLTSKISFRSVIEAINEYAFVASEYPLILCIENH 98 (260)
T ss_pred CCeecCccCHHHHHHHHH-hCCCEEEEEeEcCC--CCCEEEEeCCccccceEHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 345666666666666775 99999999999762 1123322 233 578999999998776 44444545
No 114
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=40.36 E-value=75 Score=36.53 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=48.7
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccC-CCccc-------------cchhHHHHHHHHHHcCCcEEEEEEeec
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~-~P~~Y-------------dWsgY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
.-+-+++...|..||++||++|-+---. +.. ....| .....++|.+.+++.|+||..=+-|.-
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~---~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH 99 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFY---VSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNH 99 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcc---cCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 4577999999999999999999664322 221 11233 345688999999999999998888877
Q ss_pred cC
Q 005811 332 YG 333 (676)
Q Consensus 332 CG 333 (676)
|+
T Consensus 100 ~~ 101 (543)
T TIGR02403 100 TS 101 (543)
T ss_pred cc
Confidence 75
No 115
>PRK12313 glycogen branching enzyme; Provisional
Probab=40.13 E-value=70 Score=37.37 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=44.6
Q ss_pred ccCHHHHHHHH-HHHHhcCcceEEE-eeeeeeeccCCCccccch-----------------hHHHHHHHHHHcCCcEEEE
Q 005811 266 LVDPELIRQEI-SHMKALNVDGVIV-NCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 266 l~~~~al~~~L-~~LK~~GVdGVmv-DVWWGiVE~~~P~~YdWs-----------------gY~~L~~mvr~~GLKlqvV 326 (676)
.-+-++|...| ..||++||+.|.+ +|+ | .|...+|. ..++|++.+.+.||||..=
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44567888885 9999999999984 442 2 23333443 3899999999999998766
Q ss_pred EEeeccC
Q 005811 327 MAFHEYG 333 (676)
Q Consensus 327 mSFHqCG 333 (676)
+-|--|+
T Consensus 240 ~V~nH~~ 246 (633)
T PRK12313 240 WVPGHFP 246 (633)
T ss_pred ECCCCCC
Confidence 6664344
No 116
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=40.01 E-value=20 Score=35.74 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=22.2
Q ss_pred eecCCCCcccCccc-cccccccccCCCchH
Q 005811 360 FTDREGRRNTECLS-WGVDKERVLNGRTGI 388 (676)
Q Consensus 360 ytDr~G~rn~EyLS-lg~D~~pVl~GRTpi 388 (676)
+.....+-+.|-|+ |++|+.+-++|||.+
T Consensus 106 lv~vd~k~~~~~l~WL~~~d~~sidg~tvl 135 (153)
T PRK09993 106 FSTIDEKTSQEKLTWLNVNDALSIDGKTVL 135 (153)
T ss_pred EEEcCCCcChhheeeecCCCCcccccceee
Confidence 35555666779999 588888889999965
No 117
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.65 E-value=90 Score=32.06 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=43.0
Q ss_pred CccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 005811 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVm 327 (676)
.+|+.+|.=+..+ +. ....-++.++++|++||.+... .+|. ...-.++.+.+++.||+..+.+
T Consensus 74 ~~Pl~lM~y~n~~-----~~---~~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 74 SVPIILMTYLEDY-----VD---SLDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred CCCEEEEEecchh-----hh---CHHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4677666544321 12 3455688889999999999421 0121 1345689999999999887766
Q ss_pred Eee
Q 005811 328 AFH 330 (676)
Q Consensus 328 SFH 330 (676)
+-+
T Consensus 137 ~p~ 139 (244)
T PRK13125 137 SPK 139 (244)
T ss_pred CCC
Confidence 554
No 118
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=39.31 E-value=26 Score=37.26 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCcceEEEeeeeee-ecc--------CCCccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 273 RQEISHMKALNVDGVIVNCWWGI-VEG--------WNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGi-VE~--------~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
+..|+.||++|++-|- |. +|. -.|++..|..|.+.++.++++|+++..-|-|
T Consensus 143 ~e~l~~Lk~aG~~~~~-----~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ii 203 (340)
T TIGR03699 143 REVLERLKEAGLDSIP-----GGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMF 203 (340)
T ss_pred HHHHHHHHHcCCCcCC-----CCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEe
Confidence 7899999999999663 32 232 1266779999999999999999997544433
No 119
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=38.37 E-value=7.5 Score=41.57 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=25.6
Q ss_pred cceEeecCCcccCCC-CCcchHHHHHHHhc
Q 005811 644 SFFMYQQPSSLLQGT-ICFSDLGYVIKCMH 672 (676)
Q Consensus 644 ~~FTyLRm~~~lf~~-~n~~~F~~FVr~M~ 672 (676)
.=||.+|||.+|+.| .++..+.+|++.|.
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~ale 125 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALE 125 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHh
Confidence 349999999999998 57999999999874
No 120
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=38.13 E-value=23 Score=35.90 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=17.5
Q ss_pred ccchhHHHHHHHHHHcCCcEEEE
Q 005811 304 YAWSGYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 304 YdWsgY~~L~~mvr~~GLKlqvV 326 (676)
|+|+.|+.|++.+|+.||++.+.
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipviA~ 108 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVIAL 108 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EEEE
T ss_pred CchHHHHHHHHHHHHCCCCEEEe
Confidence 58999999999999999988763
No 121
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=37.99 E-value=2.2e+02 Score=31.60 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCC------CccccchhHHHHHHHHHHcCCcEEEEEEee-ccCCCCCCCccccCC
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWN------PQKYAWSGYRELFNIIREFNLKVQVVMAFH-EYGANDSGDAWISLP 345 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~------P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH-qCGGNVGD~~~IPLP 345 (676)
..++++..++|++.|.+-+ .+-|... .....+.-++++.+++++.||++++.+|.- .|- |.-.++ |
T Consensus 124 ~~die~A~~~g~~~v~i~~--s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p----~~~r~~-~ 196 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFA--SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP----IEGPVP-P 196 (347)
T ss_pred HHHHHHHHHcCcCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC----ccCCCC-H
Confidence 3455556678999877765 4443322 233456778889999999999999777532 222 222233 6
Q ss_pred hhHHhhhcc----CCC-eeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHh
Q 005811 346 QWVMEIGKG----NQD-IFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFD 403 (676)
Q Consensus 346 ~WV~e~g~~----npD-IfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~ 403 (676)
..|.+..+. -.| |.+.|--|.- +|.++| ++++..+++|.
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~DT~G~a------------------~P~~v~-~lv~~l~~~~~ 240 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLGDTIGVG------------------TPGTVV-PMLEAVMAVVP 240 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcCCc------------------CHHHHH-HHHHHHHHhCC
Confidence 677664322 112 4445544433 566665 56666666553
No 122
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=37.76 E-value=71 Score=34.01 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=57.7
Q ss_pred CCccEEEEeec---eeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 005811 247 PYIPVYVMLAN---HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (676)
Q Consensus 247 ~~vpVyVMLPL---d~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 323 (676)
..+|||+|.== |.|-++. ..+.++...+..|++|++||.+=+- ..+++.|=.--++|.+.+. ||-+
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~~---E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSDD---ELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccChH---HHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 67999999732 2332222 3478999999999999999987542 4689999999999988877 6666
Q ss_pred EEEEEeeccC
Q 005811 324 QVVMAFHEYG 333 (676)
Q Consensus 324 qvVmSFHqCG 333 (676)
--=+.|-.|-
T Consensus 119 TFHrAFD~~~ 128 (241)
T COG3142 119 TFHRAFDECP 128 (241)
T ss_pred eeehhhhhcC
Confidence 6667777765
No 123
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=37.69 E-value=1.1e+02 Score=29.28 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=45.0
Q ss_pred CCccEEEEeeceeecCCC-cccC---HHHH-HHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcC-
Q 005811 247 PYIPVYVMLANHVINNFC-QLVD---PELI-RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFN- 320 (676)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~-~l~~---~~al-~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~G- 320 (676)
++++|.+++--..-.... -+.+ ++.| ++-++.++..|.|||.+|..|.-.+.. -++..|.++++.+|+.=
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~l~ 138 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSALG 138 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHHhc
Confidence 567777666543221100 1222 2333 445567788999999999755433221 24778888888777751
Q ss_pred -CcEEEEEEee
Q 005811 321 -LKVQVVMAFH 330 (676)
Q Consensus 321 -LKlqvVmSFH 330 (676)
.++.+.++.+
T Consensus 139 ~~~~~ls~a~~ 149 (210)
T cd00598 139 AANYLLTIAVP 149 (210)
T ss_pred ccCcEEEEEec
Confidence 1244444444
No 124
>PRK07094 biotin synthase; Provisional
Probab=37.20 E-value=64 Score=33.90 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCC-------ccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNP-------QKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P-------~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
...|+.||.+|++.|.+.+ |...| ....|..+.+.++.++++|+++..-+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl-----Es~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii 187 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH-----ETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMV 187 (323)
T ss_pred HHHHHHHHHcCCCEEEecc-----ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEE
Confidence 4678899999999998654 43221 2578999999999999999986544443
No 125
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=37.17 E-value=90 Score=34.49 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=49.2
Q ss_pred cEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 005811 250 PVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (676)
Q Consensus 250 pVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv 325 (676)
|+++-.| |.+.+.+.+...-+.||.+||.-+---.|==-.-+.+-+-..+.+|+.|++.+++.||.+..
T Consensus 119 ~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t 187 (360)
T PRK12595 119 QSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVIS 187 (360)
T ss_pred eeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4555566 66788999999999999999987774333211111223455678999999999999998754
No 126
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=37.07 E-value=28 Score=42.56 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=25.3
Q ss_pred CCCChHHHHHHH--hh-cCcEEEEeee------cC-C---CCC----CCCCCChHHHHHHHHHH
Q 005811 557 NQDGYAPVFEVL--KK-HSVTMKFVCA------VP-S---LQD----QEALADPEGLSWQVLNL 603 (676)
Q Consensus 557 ~rDGY~pIa~mf--~r-h~v~l~FTCl------M~-d---~e~----~~a~s~Pe~Lv~QV~~a 603 (676)
..||=..|++-= ++ .+|.+.=.|. |. + ++. .+....|+.|+-|...+
T Consensus 993 ~~d~g~~i~~~ev~a~~~~vv~~~~~~v~~~~~m~~~~q~eee~d~~~~~~~~~~~l~e~~~e~ 1056 (1194)
T KOG4246|consen 993 TVDGGREIADKEVVAKTKEVVGSKEVTVGEAVNMEVENQDEEEDDGDDDPEEDPEELPEEDPEE 1056 (1194)
T ss_pred cccchhhhhhHHHHHhhcceeeecchhhhhhhhhhhhhcchhhcccccCcccchhhccCCCccc
Confidence 346666776532 22 4666666665 43 1 111 33567777777665443
No 127
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=36.92 E-value=49 Score=33.17 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=43.4
Q ss_pred cCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 005811 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (676)
Q Consensus 267 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv 325 (676)
.+...+..+++.+..+|+++|.+-+.+|-. +..+...-.+++.+++++.|+++.+
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~----~~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSE----EEREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCc----hHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 345667778899999999999999998843 2356667788888888999999755
No 128
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=36.90 E-value=2.5e+02 Score=27.45 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 271 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
....-|+.++++||+.+.+-=.+ +..++.+.+++++. .++.+.+.+|
T Consensus 16 ~~~~~l~~~~~~gv~~~v~~~~~------------~~~~~~~~~la~~~-~~i~~~~G~h 62 (251)
T cd01310 16 DRDDVLARAREAGVIKIIVVGTD------------LKSSKRALELAKKY-DNVYAAVGLH 62 (251)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCC------------HHHHHHHHHHHHhC-CCeEEEEeeC
Confidence 34677888999999988776221 12456677788887 7788888888
No 129
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=36.71 E-value=32 Score=36.87 Aligned_cols=57 Identities=9% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCcceEEE---eeee-eeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 273 RQEISHMKALNVDGVIV---NCWW-GIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmv---DVWW-GiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
...|++||++|++.|.. +..- .+-..-.|++..+..+.+.+++++++||++-..|=|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 68899999999998851 1111 111122455667778899999999999998766655
No 130
>PRK08508 biotin synthase; Provisional
Probab=36.07 E-value=42 Score=35.14 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCC----c---cccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNP----Q---KYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P----~---~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
..+|++||++|++.+-++ +|. ++ + -.+|.-..+.++.++++|+++-.-|=+
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 678999999999999886 443 22 1 257888888889999999987554444
No 131
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=35.89 E-value=90 Score=32.55 Aligned_cols=114 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEE--eeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 005811 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV--NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (676)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 323 (676)
...+||++..--..+ +......+.++++|+|+||+ +.|...-+.+ -..+|++|++-+ +|.+
T Consensus 68 ~~~~~vi~gv~~~~~---------~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~-----i~~~~~~ia~~~---~~pv 130 (292)
T PRK03170 68 NGRVPVIAGTGSNST---------AEAIELTKFAEKAGADGALVVTPYYNKPTQEG-----LYQHFKAIAEAT---DLPI 130 (292)
T ss_pred CCCCcEEeecCCchH---------HHHHHHHHHHHHcCCCEEEECCCcCCCCCHHH-----HHHHHHHHHhcC---CCCE
Q ss_pred EEEEEeeccCCCCCCCccccCChhHHhhhccCCC-eeeecCCCC--cccCccccccccccccCC
Q 005811 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR--RNTECLSWGVDKERVLNG 384 (676)
Q Consensus 324 qvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfytDr~G~--rn~EyLSlg~D~~pVl~G 384 (676)
...-.--.+| +.|+.=+...-.++|. +.++|.+|. +-.+++...-|++.||.|
T Consensus 131 ~lYn~P~~~g--------~~l~~~~~~~L~~~p~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G 186 (292)
T PRK03170 131 ILYNVPGRTG--------VDILPETVARLAEHPNIVGIKEATGDLERVSELIELVPDDFAVYSG 186 (292)
T ss_pred EEEECccccC--------CCCCHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHhCCCCeEEEEC
No 132
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=35.55 E-value=1.1e+02 Score=31.49 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEE--eeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 005811 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV--NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (676)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 323 (676)
...+||+|...-... +......+..+++|+|+||+ +.+|..-+.+ -..+|+++++- .++.+
T Consensus 64 ~~~~~vi~gv~~~~~---------~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~-----~~~~~~~ia~~---~~~pi 126 (281)
T cd00408 64 AGRVPVIAGVGANST---------REAIELARHAEEAGADGVLVVPPYYNKPSQEG-----IVAHFKAVADA---SDLPV 126 (281)
T ss_pred CCCCeEEEecCCccH---------HHHHHHHHHHHHcCCCEEEECCCcCCCCCHHH-----HHHHHHHHHhc---CCCCE
Q ss_pred EEEEEeeccCCCCCCCccccCChhHHhhhccCCC-eeeecCCCCccc--CccccccccccccCC
Q 005811 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRRNT--ECLSWGVDKERVLNG 384 (676)
Q Consensus 324 qvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfytDr~G~rn~--EyLSlg~D~~pVl~G 384 (676)
...-.=...| +.|+.-+...-.+.|. +-++|.+|.... +++...-+++.||.|
T Consensus 127 ~iYn~P~~tg--------~~l~~~~~~~L~~~~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G 182 (281)
T cd00408 127 ILYNIPGRTG--------VDLSPETIARLAEHPNIVGIKDSSGDLDRLTRLIALLGPDFAVLSG 182 (281)
T ss_pred EEEECccccC--------CCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEc
No 133
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=35.31 E-value=78 Score=35.53 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=49.8
Q ss_pred CccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 005811 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVm 327 (676)
+.|..|.+=++-++..+.++++-++. ++..+|+.|+++| ++|. +-+| |. ..|+-+++..|||..++|
T Consensus 82 g~~~~Iy~K~E~~nPtGS~K~R~A~~-~~~~a~~~G~~~~-------vtet-ssGN--~G--~alA~aaa~~Gl~~~V~m 148 (419)
T TIGR01415 82 GTPARIYYKYESVSPTGSHKINTAIA-QAYYAKIEGAKRL-------VTET-GAGQ--WG--SALSLAGALFGLECKVFM 148 (419)
T ss_pred CCCceEEEEECCCCCCCCcHHHHHHH-HHHHHHHcCCCeE-------EEec-CchH--HH--HHHHHHHHHcCCcEEEEE
Confidence 34456666777788878888766554 5677788998865 4463 3343 53 789999999999999999
Q ss_pred E
Q 005811 328 A 328 (676)
Q Consensus 328 S 328 (676)
.
T Consensus 149 p 149 (419)
T TIGR01415 149 V 149 (419)
T ss_pred e
Confidence 6
No 134
>PRK09505 malS alpha-amylase; Reviewed
Probab=35.22 E-value=81 Score=37.76 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcceEEEe-eeeeeecc-----------CCCccc-------------cchhHHHHHHHHHHcCCc
Q 005811 268 DPELIRQEISHMKALNVDGVIVN-CWWGIVEG-----------WNPQKY-------------AWSGYRELFNIIREFNLK 322 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvD-VWWGiVE~-----------~~P~~Y-------------dWsgY~~L~~mvr~~GLK 322 (676)
|.++|...|..||++||++|-+- |+=.+... .+...| ....+++|.+-+++.|+|
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 67899999999999999999753 32111100 011111 345789999999999999
Q ss_pred EEEEEEeeccC
Q 005811 323 VQVVMAFHEYG 333 (676)
Q Consensus 323 lqvVmSFHqCG 333 (676)
|.+=+-|--++
T Consensus 308 VilD~V~NH~~ 318 (683)
T PRK09505 308 ILFDVVMNHTG 318 (683)
T ss_pred EEEEECcCCCc
Confidence 97665553333
No 135
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=35.18 E-value=44 Score=35.51 Aligned_cols=125 Identities=21% Similarity=0.212 Sum_probs=78.1
Q ss_pred cCCCCCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHh-cCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcC
Q 005811 242 DFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKA-LNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFN 320 (676)
Q Consensus 242 ~~~~~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~-~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~G 320 (676)
+++...+...-||.||.--+..++..+++.+...||+||- +--.||. |+||+-|=..-.-..--+-.+.|+.+|
T Consensus 90 ~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~-----GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 90 DYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT-----GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred HHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc-----ccccccCchhhhhhhHHHHHHHHHHhC
Confidence 3455677888999999775555778899999999999995 3333333 689976655444445556778888887
Q ss_pred Cc--EEEE-EEeeccCCCCCCCccccCChhHHhhhccCCCeeeecCCCCccc------Cc-ccccccccccc-CCCchHH
Q 005811 321 LK--VQVV-MAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNT------EC-LSWGVDKERVL-NGRTGIE 389 (676)
Q Consensus 321 LK--lqvV-mSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~G~rn~------Ey-LSlg~D~~pVl-~GRTpiq 389 (676)
=. ...| -.||-. | +| -|+||-|..|-+.- +- .+=+.|.-+|| .+.--++
T Consensus 165 g~~~fklvhDTFHHh-----------L------ag---E~~ffpdlTGLVHiSgV~d~~~~~~dm~d~hRVlv~~~Drl~ 224 (272)
T COG4130 165 GERVFKLVHDTFHHH-----------L------AG---ETEFFPDLTGLVHISGVEDPRLDVEDMRDPHRVLVGEKDRLD 224 (272)
T ss_pred CCceeeeehhhhhhh-----------h------cc---cceecccccceeEecccCCCcccHhhhcCcceEEecCccccc
Confidence 54 3333 345532 2 22 25799998876532 11 12346666665 3333344
Q ss_pred HH
Q 005811 390 VY 391 (676)
Q Consensus 390 ~Y 391 (676)
-|
T Consensus 225 N~ 226 (272)
T COG4130 225 NI 226 (272)
T ss_pred cH
Confidence 44
No 136
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=35.09 E-value=40 Score=35.61 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeecc--------CCCccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 272 IRQEISHMKALNVDGVIVNCWWGIVEG--------WNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 272 l~~~L~~LK~~GVdGVmvDVWWGiVE~--------~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
.+..|++||++|++.+- -+-.|. -.|++..|..|.+.++.+++.|+++-.-|=|
T Consensus 106 ~~e~l~~LkeAGl~~i~----~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ii 167 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMP----GTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMF 167 (309)
T ss_pred HHHHHHHHHHcCCCcCC----CCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 46889999999998763 112332 2377889999999999999999988655544
No 137
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=34.42 E-value=1.1e+02 Score=37.30 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCcceEEEee-eeeeeccCCCccccchhHHHHH----HHHHHcCCcEEEEEEeeccCCCCCCCccccC
Q 005811 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELF----NIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~L~----~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 344 (676)
.+++..++.|..+|+.-|-+|- -| .|...-+.-+|..|.+.+ +++ ..|++-..-+++|-|-||..+
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal--~e~~~~~~~~~~~~l~~av~af~~~-~~~v~~~~~I~~H~C~gnf~~------ 656 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAAL--REGLPLRKSEHAFYLDWAVHSFRIT-NCGVQDTTQIHTHMCYSNFND------ 656 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcch--hhcCCcCccCHHHHHHHHHHHHHHH-HhcCCCCCEEEEEEecCCcHH------
Confidence 5778889999999999999983 33 243223457788777665 333 345544445788999999664
Q ss_pred ChhHHh-hhccCCCeeeecC
Q 005811 345 PQWVME-IGKGNQDIFFTDR 363 (676)
Q Consensus 345 P~WV~e-~g~~npDIfytDr 363 (676)
|.+ +.+-+-|.++-|-
T Consensus 657 ---I~~~i~~l~~D~~~~E~ 673 (766)
T PLN02475 657 ---IIHSIIDMDADVITIEN 673 (766)
T ss_pred ---HHHHHHhCCCCEEEEEc
Confidence 222 3567778777553
No 138
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=33.97 E-value=90 Score=33.03 Aligned_cols=86 Identities=17% Similarity=0.105 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcc------ccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcccc
Q 005811 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK------YAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWIS 343 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~------YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 343 (676)
+++++++++|..+|+.-|-+|-= .+.+.-.... .+|.-+.+ .+..+.=..-+.+..|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~v~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAE---ALNRAVKGEDATVGVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHH---HHHHTTSTTTSEEEEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHH---HHHhccCCCCCEEEEEecCccchhhH---
Confidence 57888999999999999999854 2222211111 13332322 22222111234569999999854321
Q ss_pred CChhHHhhhccCCCeeeecCCCCc
Q 005811 344 LPQWVMEIGKGNQDIFFTDREGRR 367 (676)
Q Consensus 344 LP~WV~e~g~~npDIfytDr~G~r 367 (676)
....+.+-|.|+-+=...+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2345677887776555544
No 139
>PRK04302 triosephosphate isomerase; Provisional
Probab=33.89 E-value=1.5e+02 Score=29.88 Aligned_cols=47 Identities=9% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
..++.||++||+||.++- +.+...+..-.++++.+++.||.+. ++.|
T Consensus 76 ~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~I--~~v~ 122 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLESV--VCVN 122 (223)
T ss_pred hHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeEE--EEcC
Confidence 458999999999998863 2223334446778888899888765 4444
No 140
>PRK07360 FO synthase subunit 2; Reviewed
Probab=33.10 E-value=67 Score=35.12 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeec---------cCCCccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 272 IRQEISHMKALNVDGVIVNCWWGIVE---------GWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 272 l~~~L~~LK~~GVdGVmvDVWWGiVE---------~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
.+.+|+.||++|++.+- |... .-.|++-.+..|.+..++++++||++-.-|=|
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 36789999999999993 2211 11477888889999999999999999666555
No 141
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=32.72 E-value=1.1e+02 Score=30.91 Aligned_cols=55 Identities=11% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
..+...|+.+.++|+++|.+ |.+-.....+..++=...++|-+++++.||++ +.|
T Consensus 10 ~~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l----s~h 64 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDV----SVH 64 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE----EEE
Confidence 35788999999999999988 33333222122233345888999999999984 457
No 142
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=32.44 E-value=93 Score=32.94 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=56.3
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 005811 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvV 326 (676)
.+|+||-+-.|--+ .--...|...|+..|.+|++.|++- .|--...=.-..+|.+++++.|||+.+=
T Consensus 53 ~~V~v~~GGtl~E~-----~~~q~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~~~rlI~~~~~~g~~v~~E 119 (237)
T TIGR03849 53 YGIKVYPGGTLFEI-----AHSKGKFDEYLNECDELGFEAVEIS--------DGSMEISLEERCNLIERAKDNGFMVLSE 119 (237)
T ss_pred cCCeEeCCccHHHH-----HHHhhhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHHHHHHHHHHHhCCCeEecc
Confidence 45777666322111 1123789999999999999999983 3334455566788999999999999764
Q ss_pred EEeeccCCCCCCCccccCChhHHhh
Q 005811 327 MAFHEYGANDSGDAWISLPQWVMEI 351 (676)
Q Consensus 327 mSFHqCGGNVGD~~~IPLP~WV~e~ 351 (676)
+.-.- -..+..++...|+..+
T Consensus 120 vG~K~----~~~~~~~~~~~~i~~~ 140 (237)
T TIGR03849 120 VGKKS----PEKDSELTPDDRIKLI 140 (237)
T ss_pred ccccC----CcccccCCHHHHHHHH
Confidence 33321 1112235566676554
No 143
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=31.77 E-value=41 Score=41.25 Aligned_cols=67 Identities=16% Similarity=0.381 Sum_probs=50.4
Q ss_pred ccCHHHHHHHHHHHH-----hcC---cceEEEeeeeeeeccCCCccc---cchhHH---HHHHHHHHcCCcEEEEEEeec
Q 005811 266 LVDPELIRQEISHMK-----ALN---VDGVIVNCWWGIVEGWNPQKY---AWSGYR---ELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 266 l~~~~al~~~L~~LK-----~~G---VdGVmvDVWWGiVE~~~P~~Y---dWsgY~---~L~~mvr~~GLKlqvVmSFHq 331 (676)
|+|...+-.+|-.|- .+| +.-||+ |.--+..++-| +|.-|+ +|.++++++|.+++- ||.
T Consensus 532 L~na~~vm~~ll~l~~yR~~l~~~~n~QEVMl----GYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lrl---FHG 604 (910)
T COG2352 532 LDNAPDVMTQLLNLPLYRALLAGRGNVQEVML----GYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRL---FHG 604 (910)
T ss_pred HhccHHHHHHHHcChHHHHHHcCCCCceEEEe----cccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEE---Ecc
Confidence 666666666664432 233 777777 77777667766 899997 589999999999985 999
Q ss_pred cCCCCCCC
Q 005811 332 YGANDSGD 339 (676)
Q Consensus 332 CGGNVGD~ 339 (676)
-||.||-.
T Consensus 605 RGGtVGRG 612 (910)
T COG2352 605 RGGSVGRG 612 (910)
T ss_pred CCCCCCCC
Confidence 99999964
No 144
>PRK04326 methionine synthase; Provisional
Probab=31.66 E-value=81 Score=33.38 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCcceEEEee-eeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhH
Q 005811 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV 348 (676)
+++...+++|+.+|++.|.+|= =|.. .|. +|.-+.+.++.+-+ +++..+ ..|-|.||.. .-+
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~v--~lH~C~G~~~--------~~~ 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAKL--GLHVCYGDYS--------RIA 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCEE--EEEEeCCCcH--------HHH
Confidence 5778889999999999998873 2221 232 33444444444433 445443 5699987753 111
Q ss_pred HhhhccCCCeeeecCC
Q 005811 349 MEIGKGNQDIFFTDRE 364 (676)
Q Consensus 349 ~e~g~~npDIfytDr~ 364 (676)
-...+.+.|.+.-|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 1223556676665554
No 145
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=31.44 E-value=88 Score=31.19 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 269 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
...++.-|+.++++|.+||++.. ++... .++....+|-+.+++.||++-....+
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~------~~~~~~~~l~~~l~~~gl~i~~~~~~ 67 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFP------ADYKELAELKELLADYGLEITSLAPF 67 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCC------chhhhHHHHHHHHHHcCcEEEeeccc
Confidence 35678899999999999999977 22222 22323899999999999998655444
No 146
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=31.43 E-value=82 Score=34.46 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCcceEEEee---eeeeeccC-----CCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCC
Q 005811 270 ELIRQEISHMKALNVDGVIVNC---WWGIVEGW-----NPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAND 336 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDV---WWGiVE~~-----~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNV 336 (676)
+.+...|++|+..|+|||-+|+ ||=..+.. ++-+=.=.-|.+|.+.+|.+.=-+.||- |-|+++
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~---qng~~l 197 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVIP---QNGAEL 197 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEEe---cccHhh
Confidence 5788999999999999998876 54333321 2223333348999999998765565553 455443
No 147
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=31.14 E-value=94 Score=33.19 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=47.9
Q ss_pred CCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccc---cch---hHHHHHHHHHHcCCc-----EEEEEEeec
Q 005811 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK-----VQVVMAFHE 331 (676)
Q Consensus 263 ~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y---dWs---gY~~L~~mvr~~GLK-----lqvVmSFHq 331 (676)
+++|.-....++..++|+ .|+--|++|||=|--....|-.| .+. ..+++.+.|++...+ |...|--|.
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~eP~v~Hg~t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc 101 (258)
T cd08625 23 AGQLTGLSSVEMYRQVLL-TGCRCIELDCWKGRPPEEEPFITHGFTMTTEIPFKDVIEAIAESAFKTSPYPVILSFENHV 101 (258)
T ss_pred CCccCCccCHHHHHHHHH-cCCCEEEEEecCCCCCCCCCEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEehhcC
Confidence 356777777888888885 89999999999885222234443 222 368999999997776 555566674
No 148
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=30.97 E-value=79 Score=32.56 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=50.8
Q ss_pred HHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccCCCeeeecCC------CCcccCccccccccccccCCCchH
Q 005811 315 IIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDRE------GRRNTECLSWGVDKERVLNGRTGI 388 (676)
Q Consensus 315 mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfytDr~------G~rn~EyLSlg~D~~pVl~GRTpi 388 (676)
-|.+.+++ +||-.|..== -.+....-||.||.++ -+||+|+.=+. .+|-.+ -+=--| +.+---|
T Consensus 74 rI~~~~~~--iivDtH~~Ik-TP~GylpgLP~~Vl~~--l~pd~ivllEaDp~~Il~RR~~D-~~r~Rd----~es~e~i 143 (189)
T COG2019 74 RIAEMALE--IIVDTHATIK-TPAGYLPGLPSWVLEE--LNPDVIVLLEADPEEILERRLRD-SRRDRD----VESVEEI 143 (189)
T ss_pred HHHHhhhc--eEEeccceec-CCCccCCCCcHHHHHh--cCCCEEEEEeCCHHHHHHHHhcc-cccccc----cccHHHH
Confidence 34444555 8999996432 2234556699999986 78897763221 111111 000011 1111236
Q ss_pred HHHHHHHHHHHHHHhhhhcccceEEE
Q 005811 389 EVYFDFMRSFRTEFDDLFVAGLICAV 414 (676)
Q Consensus 389 q~Y~DFMrSFr~~F~~~l~~~vI~eI 414 (676)
+.-.++-|.++-..+-+.++ ++.=|
T Consensus 144 ~eHqe~nR~aA~a~A~~~ga-tVkIV 168 (189)
T COG2019 144 REHQEMNRAAAMAYAILLGA-TVKIV 168 (189)
T ss_pred HHHHHHHHHHHHHHHHHhCC-eEEEE
Confidence 67778888888888888875 55444
No 149
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=30.59 E-value=33 Score=34.56 Aligned_cols=48 Identities=6% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 005811 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (676)
Q Consensus 269 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlq 324 (676)
++.|++.|.+||..||..|.+ ++|...-..|.+. +|.+.+++.|++|.
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAWH 104 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EEE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEEE
Confidence 478999999999999999976 7777656666665 56688999998663
No 150
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=30.35 E-value=1.1e+02 Score=32.83 Aligned_cols=64 Identities=22% Similarity=0.437 Sum_probs=44.1
Q ss_pred CcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc-ch-----hHHHHHHHHHHcCCc-----EEEEEEee
Q 005811 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-WS-----GYRELFNIIREFNLK-----VQVVMAFH 330 (676)
Q Consensus 264 ~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd-Ws-----gY~~L~~mvr~~GLK-----lqvVmSFH 330 (676)
++|.-....+...++|+ .|+--|++|||=| +...|-.|- |+ ..+++.+.|++...+ |...|--|
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~S~yPvIlsLE~H 98 (258)
T cd08629 24 DQLTGPSSTEAYIRALC-KGCRCLELDCWDG--PNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENH 98 (258)
T ss_pred CccCCccCHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCCCccCcCHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 45666666777777777 8999999999988 222344332 22 578999999998876 44444455
No 151
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=30.11 E-value=1.7e+02 Score=28.17 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=63.9
Q ss_pred HHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccC
Q 005811 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGN 355 (676)
Q Consensus 276 L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~n 355 (676)
..+||+.||+.|++=+.=|.- |.=..|..=.+.++++||++-+..-++.| |..+. .-==+|+++
T Consensus 12 w~~~k~~gi~fviikateG~~-------~~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~a--~~qA~~f~~----- 75 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGTS-------YVDPYFESNIKNAKAAGLPVGAYHFARAT--NSSDA--EAQADYFLN----- 75 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETTT-------EE-TTHHHHHHHHHHTTSEEEEEEE--TT--THCHH--HHHHHHHHH-----
T ss_pred HHHHHHCCCCEEEEEeeeCCC-------eecchHHHHHHHHHHcCCeEEEEEEeccC--CcccH--HHHHHHHHH-----
Confidence 566799999999999975542 22235677778899999999887777765 32221 000013322
Q ss_pred CCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhc
Q 005811 356 QDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (676)
Q Consensus 356 pDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~ 407 (676)
.-+....-.|-+++|-+--...........++++.|.++++...|
T Consensus 76 -------~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~~G 120 (181)
T PF01183_consen 76 -------QVKGGDPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKAAG 120 (181)
T ss_dssp -------CTHTSSTSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHHCT
T ss_pred -------HhcccCCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 221111223334556542123345568889999999999976554
No 152
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.99 E-value=42 Score=37.86 Aligned_cols=33 Identities=42% Similarity=0.835 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCC-hhHHhhhcc
Q 005811 305 AWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP-QWVMEIGKG 354 (676)
Q Consensus 305 dWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP-~WV~e~g~~ 354 (676)
.|.-|.+||..+- |-...+.+.|| +|+|++.++
T Consensus 6 Sw~nYc~LF~~iL-----------------~s~~p~~l~LPn~WlwDiiDE 39 (404)
T PF10255_consen 6 SWDNYCELFNYIL-----------------NSDGPVNLELPNQWLWDIIDE 39 (404)
T ss_pred HHHHHHHHHHHHh-----------------CCCCCcccCCCcHHHHHHHHH
Confidence 5999999999987 22235788899 699987443
No 153
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=29.62 E-value=1.3e+02 Score=31.10 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=52.9
Q ss_pred ccCHHHHHHHHHHHHh--cCcceEEEeeeeeeeccCCCc-----cccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCC
Q 005811 266 LVDPELIRQEISHMKA--LNVDGVIVNCWWGIVEGWNPQ-----KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (676)
Q Consensus 266 l~~~~al~~~L~~LK~--~GVdGVmvDVWWGiVE~~~P~-----~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD 338 (676)
..+.+.+..-.+.+++ +-+|+|.+|.+|..-- +.- +-.|.--+++++-+++.|+|+.+++.-+
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~-------- 89 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPY-------- 89 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChh--------
Confidence 4677888888888888 5578999999998432 222 1134456889999999999887776544
Q ss_pred CccccCChhHHhhhc
Q 005811 339 DAWISLPQWVMEIGK 353 (676)
Q Consensus 339 ~~~IPLP~WV~e~g~ 353 (676)
+-.|..+.-+
T Consensus 90 -----v~~w~~~~~~ 99 (265)
T cd06589 90 -----IREWWAEVVK 99 (265)
T ss_pred -----HHHHHHHHHH
Confidence 2778887544
No 154
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=29.39 E-value=1.1e+02 Score=32.75 Aligned_cols=64 Identities=17% Similarity=0.375 Sum_probs=44.0
Q ss_pred CCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccc---cchh---HHHHHHHHHHcCCc---EEEEEEe
Q 005811 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWSG---YRELFNIIREFNLK---VQVVMAF 329 (676)
Q Consensus 263 ~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y---dWsg---Y~~L~~mvr~~GLK---lqvVmSF 329 (676)
+++|.-....+.-.++|+ .|+--|++|||=| +...|-.| .+.. .+++.+.|++...+ +=||||+
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~Ik~~AF~~s~yPvIlsl 95 (258)
T cd08631 23 EDQLRGQSSVEGYIRALK-RGCRCVEVDVWDG--PNGEPIVYHGHTFTSKILFKDVVAAVAQYAFQVSDYPVILSL 95 (258)
T ss_pred CCcccCccCHHHHHHHHH-cCCcEEEEEeecC--CCCCcEEeeCCcccCCcCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 356666667777777787 5999999999987 22224333 2222 78999999999887 2445554
No 155
>PLN02417 dihydrodipicolinate synthase
Probab=29.31 E-value=2.7e+02 Score=29.26 Aligned_cols=93 Identities=10% Similarity=0.035 Sum_probs=53.4
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEe--eeeeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 005811 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVN--CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (676)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvD--VWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlq 324 (676)
..+||.+..-- ++.+..-...++.+++|+|+||+= .|+-.- + .+-.+.|+-|.++.
T Consensus 69 ~~~pvi~gv~~---------~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~-----~----~~i~~~f~~va~~~---- 126 (280)
T PLN02417 69 GKIKVIGNTGS---------NSTREAIHATEQGFAVGMHAALHINPYYGKTS-----Q----EGLIKHFETVLDMG---- 126 (280)
T ss_pred CCCcEEEECCC---------ccHHHHHHHHHHHHHcCCCEEEEcCCccCCCC-----H----HHHHHHHHHHHhhC----
Confidence 35777654322 234566677788899999999972 232211 1 23333344444443
Q ss_pred EEEEeeccCCCCCCCccccCChhHHhhhccCCC-eeeecCCCC
Q 005811 325 VVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR 366 (676)
Q Consensus 325 vVmSFHqCGGNVGD~~~IPLP~WV~e~g~~npD-IfytDr~G~ 366 (676)
+|+=+|- . + ...+.|+.-+++.-.++|. +-++|.+|.
T Consensus 127 pi~lYn~-P---~-~tg~~l~~~~l~~l~~~pni~giKdss~~ 164 (280)
T PLN02417 127 PTIIYNV-P---G-RTGQDIPPEVIFKIAQHPNFAGVKECTGN 164 (280)
T ss_pred CEEEEEC-h---h-HhCcCCCHHHHHHHhcCCCEEEEEeCCCc
Confidence 6776652 1 1 2235577766665556787 567888886
No 156
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=29.21 E-value=1e+02 Score=31.90 Aligned_cols=56 Identities=11% Similarity=-0.042 Sum_probs=36.4
Q ss_pred hHHHHHHHhhcCcEEEEeee---cCCCCCCCCCCChHHHHHHHHHHHHhcCCcccccccc
Q 005811 561 YAPVFEVLKKHSVTMKFVCA---VPSLQDQEALADPEGLSWQVLNLAWDRGLAVAGENAL 617 (676)
Q Consensus 561 Y~pIa~mf~rh~v~l~FTCl---M~d~e~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL 617 (676)
...+++.|-+.|+...++|+ ..+.+. -...--++++..+...+++.||..+|||.-
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~-LGr~l~~e~i~~L~~~~~~~gvdp~GE~GE 181 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESF-LGRELDRELIEELPELNKKYGVDPCGEGGE 181 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGG-TT-B--HHHHHHHHHHHHHH---TT-TTTT
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHH-CCCCccHHHHHHHHHHHhhcCccccCCCee
Confidence 66788888889999999999 223322 111223689999999999999999999974
No 157
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.15 E-value=1.4e+02 Score=30.36 Aligned_cols=53 Identities=9% Similarity=-0.071 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHc-CCcEE
Q 005811 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF-NLKVQ 324 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~-GLKlq 324 (676)
..+...|+.+|++|.++|++++=+..-. ..+. .+=...++|.+++++. |+.+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~i~ 63 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSW-LSRP-LKKERAEKFKAIAEEGPSICLS 63 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCcc-CCCC-CCHHHHHHHHHHHHHcCCCcEE
Confidence 5678899999999999999876221000 0000 0115678888888888 66644
No 158
>PRK12677 xylose isomerase; Provisional
Probab=29.09 E-value=1.2e+02 Score=33.78 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCcceEEEee---e-eeeeccCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 005811 271 LIRQEISHMKALNVDGVIVNC---W-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 271 al~~~L~~LK~~GVdGVmvDV---W-WGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVm 327 (676)
.+..-+++++.+|++||++.. | |+.... ..+ ...+++-+++++.||+|..|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v~~v~ 87 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVVPMVT 87 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCeeEEEe
Confidence 367889999999999998831 1 222211 011 147889999999999987654
No 159
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=28.95 E-value=1e+02 Score=35.41 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
+.+.|....+.++++|..+||+|+.+| |++-+.|.+.+++.+|-|+.=-+||
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccc
Confidence 479999999999999999999997765 3455667777778877776655665
No 160
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=28.89 E-value=51 Score=32.85 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCcceEEEee
Q 005811 270 ELIRQEISHMKALNVDGVIVNC 291 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvDV 291 (676)
+++++.|+.|+++|||||+|.-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~ 23 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN 23 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC
Confidence 5789999999999999999863
No 161
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=28.86 E-value=2.5e+02 Score=29.94 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=51.4
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeccCCCcccc------chhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCC--
Q 005811 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYA------WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP-- 345 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd------WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP-- 345 (676)
.++++..++||+.|.+-+ .+-|...-.+++ +.-++++.+++++.||++++.+ .|...-++.
T Consensus 78 ~die~A~~~g~~~v~i~~--s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---------ed~~r~d~~~~ 146 (279)
T cd07947 78 EDLKLVKEMGLKETGILM--SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---------EDITRADIYGF 146 (279)
T ss_pred HHHHHHHHcCcCEEEEEE--cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---------EcccCCCcccc
Confidence 344555567999888744 454543334444 3457888888999999988777 233333333
Q ss_pred --hhHHhhhc----cCCC--eeeecCCCCcc
Q 005811 346 --QWVMEIGK----GNQD--IFFTDREGRRN 368 (676)
Q Consensus 346 --~WV~e~g~----~npD--IfytDr~G~rn 368 (676)
.|+.+..+ .-.| |-+.|--|.-+
T Consensus 147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~ 177 (279)
T cd07947 147 VLPFVNKLMKLSKESGIPVKIRLCDTLGYGV 177 (279)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEeccCCCcCC
Confidence 57777644 3344 44666666543
No 162
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.78 E-value=1.4e+02 Score=31.82 Aligned_cols=66 Identities=12% Similarity=0.225 Sum_probs=46.6
Q ss_pred ccCHHHHHHHHHHHHhcC--cceEEEee-eeeeec-cCCCccccch-----hHHHHHHHHHHcCCcEEEEEEeec
Q 005811 266 LVDPELIRQEISHMKALN--VDGVIVNC-WWGIVE-GWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~G--VdGVmvDV-WWGiVE-~~~P~~YdWs-----gY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
..+.+.+..-++.+++.| +|+|.+|. |++..- +..-+.|+|. --+++++-+++.|+|+.+++.=|-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v 94 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFV 94 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcc
Confidence 457788888888888765 79999998 544221 1123345554 467888889999999998875443
No 163
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=28.66 E-value=15 Score=35.82 Aligned_cols=9 Identities=44% Similarity=0.745 Sum_probs=3.4
Q ss_pred HHHHhHHHH
Q 005811 73 EKERTKLRE 81 (676)
Q Consensus 73 e~e~~~~re 81 (676)
|||+.+.|+
T Consensus 36 erer~r~r~ 44 (137)
T PF12868_consen 36 ERERERRRH 44 (137)
T ss_pred hhccccccc
Confidence 333333333
No 164
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=28.44 E-value=56 Score=36.35 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=32.8
Q ss_pred HHHHHHhc-CcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 275 EISHMKAL-NVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 275 ~L~~LK~~-GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
.|..+++. ||+||..-..+--+ ...++-..-+++-++|.++||+|-||=|+
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv 67 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV 67 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES-
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 47788886 99999998876333 22334445678888999999999998654
No 165
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=28.44 E-value=1.5e+02 Score=35.80 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcCcceEEEe--eeeeeeccCCCccccchhHHHHH-HHHHHc--CCcEEEEEEeeccCCCCCCCccccC
Q 005811 270 ELIRQEISHMKALNVDGVIVN--CWWGIVEGWNPQKYAWSGYRELF-NIIREF--NLKVQVVMAFHEYGANDSGDAWISL 344 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvD--VWWGiVE~~~P~~YdWsgY~~L~-~mvr~~--GLKlqvVmSFHqCGGNVGD~~~IPL 344 (676)
.+++..++.|.++|++-|-+| .| +|.-.-+.-+|..|.+.+ +.++.+ |++--.-+..|-|-||+++-
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL---~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i----- 646 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPAL---REGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEI----- 646 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchh---hhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHH-----
Confidence 467788999999999999998 34 332212223666665443 333332 55322334899999987621
Q ss_pred ChhHHhhhccCCCeeeec
Q 005811 345 PQWVMEIGKGNQDIFFTD 362 (676)
Q Consensus 345 P~WV~e~g~~npDIfytD 362 (676)
=.++ .+.+-|.++-|
T Consensus 647 ~~~l---~~l~vD~i~lE 661 (750)
T TIGR01371 647 IESI---ADLDADVISIE 661 (750)
T ss_pred HHHH---HhCCCCEEEEE
Confidence 1223 35667777766
No 166
>PRK06256 biotin synthase; Validated
Probab=28.40 E-value=68 Score=33.98 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCCccc-------cchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------AWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y-------dWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
...|+.||++|++.|.+. +|. .+..| +|..+.+.++.++++|+++..-+=|
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~ 209 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGII 209 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEE
No 167
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=28.22 E-value=98 Score=34.38 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCcceEEEe-eeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCC
Q 005811 270 ELIRQEISHMKALNVDGVIVN-CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvD-VWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGN 335 (676)
+.....|++.-.+|+|.|.+. -|=|........+|...+=.++.+-|++.+-+ .+|+ |-|+|.
T Consensus 189 d~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~pii--~f~~ga 252 (352)
T COG0407 189 DAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-VPVI--HFCKGA 252 (352)
T ss_pred HHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-CcEE--EECCCc
Confidence 445566777788999999875 45455555678999999999999999988777 4555 557743
No 168
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.20 E-value=1.5e+02 Score=29.79 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccC------CCccccchhHHHHHHHHHHcCCcEEEEE-Eeecc
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGW------NPQKYAWSGYRELFNIIREFNLKVQVVM-AFHEY 332 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~------~P~~YdWsgY~~L~~mvr~~GLKlqvVm-SFHqC 332 (676)
...++.++.+|++.|.+-+= ..+.. ...+.++.-..+..+.+++.|+++++.+ ....|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~--~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDS--ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEe--cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 66788999999999887662 22210 1222367778889999999999999888 57766
No 169
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=28.12 E-value=74 Score=33.73 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=53.6
Q ss_pred CCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 005811 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (676)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv 325 (676)
..+|+||-+-.|--+- .-...+...|+.+|++|++.|+|. .+--...=.--.++.+++++.|||+.+
T Consensus 65 ~~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiS--------dGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 65 SHGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEIS--------DGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp CTT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HcCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEec--------CCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 4668888777766442 125789999999999999999985 233344455677889999999999876
Q ss_pred EEEeeccCCCCCCCccccCChhHHhh
Q 005811 326 VMAFHEYGANDSGDAWISLPQWVMEI 351 (676)
Q Consensus 326 VmSFHqCGGNVGD~~~IPLP~WV~e~ 351 (676)
=.--.. .+.+....+..|+..+
T Consensus 132 EvG~K~----~~~~~~~~~~~~i~~~ 153 (244)
T PF02679_consen 132 EVGKKD----PESDFSLDPEELIEQA 153 (244)
T ss_dssp EES-SS----HHHHTT--CCHHHHHH
T ss_pred cccCCC----chhcccCCHHHHHHHH
Confidence 543221 1122222366787764
No 170
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=28.12 E-value=89 Score=33.82 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCcceEEEeeeee-eecc--------CCCccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 272 IRQEISHMKALNVDGVIVNCWWG-IVEG--------WNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 272 l~~~L~~LK~~GVdGVmvDVWWG-iVE~--------~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
.+..|++||++|++.+- | -+|. -.|++..|.-+.+..+.++++|+++-.-|=|
T Consensus 149 ~~e~l~~LkeAGld~~~-----~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMP-----GGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHcCCCcCC-----CCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 46679999999998664 2 2333 2366778899999999999999998665544
No 171
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=28.11 E-value=1.5e+02 Score=27.80 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEE
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmS 328 (676)
..+......+.++++|+|+|++..=++..-. +..+.-...|+++.+.+ +.++.+.+...
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~-~~~~~~~~~~~~i~~~~-~~~~pv~iy~~ 121 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSLKE-GDWEEVLEEIAAVVEAA-DGGLPLKVILE 121 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHHhC-CCHHHHHHHHHHHHHHh-cCCceEEEEEE
Confidence 3577888889999999999999755542211 11122234444444443 34766554443
No 172
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=28.05 E-value=2.1e+02 Score=35.64 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccc-------------cchhHHHHHHHHHHcCCcEEEEEEeeccCC
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y-------------dWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 334 (676)
+.+++.+.|..||.+||+.|-+---+--.. .+...| ....+++|.+.+++.||||..=+-+.-|+.
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~-gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARP-GSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCC-CCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 457899999999999999997654321110 112223 357899999999999999988888876663
No 173
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=27.76 E-value=1.5e+02 Score=30.53 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=47.2
Q ss_pred EeeceeecCCCcccCHHHHHHHHHHHH-----hcCcc----eEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEE
Q 005811 254 MLANHVINNFCQLVDPELIRQEISHMK-----ALNVD----GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (676)
Q Consensus 254 MLPLd~V~~~~~l~~~~al~~~L~~LK-----~~GVd----GVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlq 324 (676)
++|-+.|. ++.+.|.++...-|++|| .+|.. -|.|++|+.-+|+ +.+.+.++.+||++.
T Consensus 25 ~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 25 MQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEVL 92 (239)
T ss_pred eccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCceE
Confidence 44444443 577899999999999998 34542 4678888877766 688899999999997
Q ss_pred EEEE
Q 005811 325 VVMA 328 (676)
Q Consensus 325 vVmS 328 (676)
.++.
T Consensus 93 ~li~ 96 (239)
T TIGR02529 93 HVLD 96 (239)
T ss_pred EEee
Confidence 6654
No 174
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=27.69 E-value=5.1e+02 Score=27.42 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE------------------EEEe
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV------------------VMAF 329 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv------------------VmSF 329 (676)
+++.+...++.++..|+++|.+.+--- +++ ....|. .|-++.+..++++.+ .+..
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~---~~~~~~---~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLG---RRLTWD---DLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCC---CCCCHH---HHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEE
Confidence 677888889999999999998866321 222 113443 233333333444332 1334
Q ss_pred eccCCCCCCCccccCChhHHhhhccCC-CeeeecCC----CCcccCccccccccccccCCCchHHH--------HHHHHH
Q 005811 330 HEYGANDSGDAWISLPQWVMEIGKGNQ-DIFFTDRE----GRRNTECLSWGVDKERVLNGRTGIEV--------YFDFMR 396 (676)
Q Consensus 330 HqCGGNVGD~~~IPLP~WV~e~g~~np-DIfytDr~----G~rn~EyLSlg~D~~pVl~GRTpiq~--------Y~DFMr 396 (676)
|.+||-..| ..+|-...+.++.+.-+ +|-..=-- |.--.++|.+|+|-+-| ||--+.. -.++++
T Consensus 200 ~~~gG~~~~-~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i--g~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLD-GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI--GRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCC-CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE--cHHHHHHHHhcCHHHHHHHHH
Confidence 456665433 23444445555533222 33333333 34445688999998644 5543322 246888
Q ss_pred HHHHHHhhhhc
Q 005811 397 SFRTEFDDLFV 407 (676)
Q Consensus 397 SFr~~F~~~l~ 407 (676)
.+++++...+.
T Consensus 277 ~l~~el~~~m~ 287 (299)
T cd02809 277 ILRDELERAMA 287 (299)
T ss_pred HHHHHHHHHHH
Confidence 88888777664
No 175
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=27.32 E-value=1.2e+02 Score=33.41 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchh-----HHHHHHHHHHcCCcEEE
Q 005811 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----YRELFNIIREFNLKVQV 325 (676)
Q Consensus 263 ~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg-----Y~~L~~mvr~~GLKlqv 325 (676)
-|.+.+.+.+...-+.||++|.+-+...+| +..-.-|.|.| ++-|++.+++.||.+..
T Consensus 100 PCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 100 PCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred cCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcEEE
Confidence 467899999999999999999996655555 32333356655 99999999999998754
No 176
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=27.32 E-value=1.3e+02 Score=31.66 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=44.2
Q ss_pred CcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---ch---hHHHHHHHHHHcCCc-----EEEEEEeecc
Q 005811 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK-----VQVVMAFHEY 332 (676)
Q Consensus 264 ~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---Ws---gY~~L~~mvr~~GLK-----lqvVmSFHqC 332 (676)
++|.-....+...++| ..|+-.|++|||=| +...|-.|- .. ..+++.+.|++.+.+ |...|--|.|
T Consensus 24 ~Ql~~~ss~e~Y~~aL-~~GcRcvElD~wdg--~~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlSlE~Hcs 100 (227)
T cd08594 24 DQLLSQSRVDMYARVL-QAGCRCVEVDCWDG--PDGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEYPVILSIENHCS 100 (227)
T ss_pred CcccCcccHHHHHHHH-HhCCcEEEEEeecC--CCCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCCCEEEEecccCC
Confidence 4565555666666777 78999999999987 222344332 11 268899999998776 4555555643
No 177
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=27.26 E-value=1.2e+02 Score=38.49 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcCcceEEEe-ee-eeee-ccC----------CCccccch-------------------------hH
Q 005811 268 DPELIRQEISHMKALNVDGVIVN-CW-WGIV-EGW----------NPQKYAWS-------------------------GY 309 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvD-VW-WGiV-E~~----------~P~~YdWs-------------------------gY 309 (676)
+..+|...|..||++||+.|.+= |. .+.| |.. +...|+|- .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 45889999999999999999653 32 1111 100 12345554 37
Q ss_pred HHHHHHHHHcCCcEEEEEEeecc
Q 005811 310 RELFNIIREFNLKVQVVMAFHEY 332 (676)
Q Consensus 310 ~~L~~mvr~~GLKlqvVmSFHqC 332 (676)
++|++-+.+.||+|..=+-|--|
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt 580 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHT 580 (1111)
T ss_pred HHHHHHHHHCCCEEEEecccccc
Confidence 88888889999998765555333
No 178
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=26.86 E-value=1.4e+02 Score=31.94 Aligned_cols=56 Identities=27% Similarity=0.459 Sum_probs=39.6
Q ss_pred CcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---c---hhHHHHHHHHHHcCCc
Q 005811 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---W---SGYRELFNIIREFNLK 322 (676)
Q Consensus 264 ~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---W---sgY~~L~~mvr~~GLK 322 (676)
++|.-....+.-.++|+ .|+--|++|||=| +...|-.|- + =..+++.+.|++.+.+
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg--~~~eP~v~HG~t~t~~i~f~~v~~~I~~~aF~ 85 (257)
T cd08593 24 DQLKGPSSTEAYIRALK-KGCRCVELDCWDG--PDGEPIIYHGHTLTSKILFKDVIQAIREYAFK 85 (257)
T ss_pred CcccCCccHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCccccCcCHHHHHHHHHHHhcc
Confidence 55666666777777777 8999999999987 222344332 1 2358999999998866
No 179
>PTZ00445 p36-lilke protein; Provisional
Probab=26.80 E-value=1.4e+02 Score=31.38 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccch------------hHHHHHHHHHHcCCcEEEE
Q 005811 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS------------GYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 266 l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs------------gY~~L~~mvr~~GLKlqvV 326 (676)
++..+....--+.||+.|+..|.+|.==-+|..++.|..++. ..+++++.+++.|++|.||
T Consensus 25 ~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 25 LNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVV 97 (219)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence 455666677777899999999999987777776666666664 4788999999999998665
No 180
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.51 E-value=66 Score=35.46 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=35.3
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 005811 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvV 326 (676)
..|+.++..|+++|-.+.|.-+.. .. .+.. -..++++.++++||||+|-
T Consensus 249 ~~l~~i~a~~a~~i~P~~~~l~~~-~~--~~~~-~~~~~v~~Ah~~GL~V~~W 297 (356)
T cd08560 249 PSMDELKARGVNIIAPPIWMLVDP-DE--NGKI-VPSEYAKAAKAAGLDIITW 297 (356)
T ss_pred HHHHHHHhCCccEecCchhhcccc-cc--cccc-CCHHHHHHHHHcCCEEEEE
Confidence 668999999999987755443333 22 2222 5678999999999998874
No 181
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=26.36 E-value=5.9e+02 Score=27.68 Aligned_cols=92 Identities=12% Similarity=0.224 Sum_probs=58.2
Q ss_pred cccCHHHHHHHHHHHHhcC--cceEEEeeeeeeeccCCCccccc-----hhH--HHHHHHHHHcCCcEEEEEEeeccCCC
Q 005811 265 QLVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAW-----SGY--RELFNIIREFNLKVQVVMAFHEYGAN 335 (676)
Q Consensus 265 ~l~~~~al~~~L~~LK~~G--VdGVmvDVWWGiVE~~~P~~YdW-----sgY--~~L~~mvr~~GLKlqvVmSFHqCGGN 335 (676)
...+.+.+..-++.+++.| +|+|.+|+=|-- .-+.|+| ..- +++++-+++.|+|+.+++-=|-+-.+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~ 94 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANE 94 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCc
Confidence 3567788888888888755 689999965531 1234443 344 88899999999999887754433221
Q ss_pred CCCCccccCChhHHhhhccCCCeeeecCCCCc
Q 005811 336 DSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367 (676)
Q Consensus 336 VGD~~~IPLP~WV~e~g~~npDIfytDr~G~r 367 (676)
.+.+ -+. .+++.+ .+.|.++.+|..
T Consensus 95 ~~~~----~~~--~~e~~~-~g~~v~~~~g~~ 119 (339)
T cd06602 95 PTGS----YPP--YDRGLE-MDVFIKNDDGSP 119 (339)
T ss_pred CCCC----CHH--HHHHHH-CCeEEECCCCCE
Confidence 1111 222 334443 377888888864
No 182
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=26.04 E-value=1.2e+02 Score=32.03 Aligned_cols=45 Identities=16% Similarity=0.317 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHH
Q 005811 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIRE 318 (676)
Q Consensus 272 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~ 318 (676)
+++-++-++..|.|||.+|+| -.....+. .=+...|.+|++-+|+
T Consensus 97 i~s~~~~~~~~~~DGidiD~w-e~p~~~~~-~~d~~~~~~~l~el~~ 141 (318)
T cd02876 97 IKLLVTTAKKNHFDGIVLEVW-SQLAAYGV-PDKRKELIQLVIHLGE 141 (318)
T ss_pred HHHHHHHHHHcCCCcEEEech-hhhcccCC-HHHHHHHHHHHHHHHH
Confidence 344466778999999999974 32211111 1156667776666654
No 183
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=26.03 E-value=1.4e+02 Score=32.06 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=46.5
Q ss_pred CCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---ch---hHHHHHHHHHHcCCc-----EEEEEEee
Q 005811 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK-----VQVVMAFH 330 (676)
Q Consensus 263 ~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---Ws---gY~~L~~mvr~~GLK-----lqvVmSFH 330 (676)
++||......+...++|+ .|+--|++|||=|--+...|-.|- +. ..+++.+.|++...+ |...|--|
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg~~~~~eP~V~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlslE~H 100 (257)
T cd08626 23 GRQFGGKSSVEMYRQVLL-AGCRCIELDCWDGKGEDQEPIITHGKAMCTDILFKDVIQAIKDTAFVTSDYPVILSFENH 100 (257)
T ss_pred CCcccCCccHHHHHHHHH-cCCcEEEEEecCCCCCCCCCEEeeCCCCccCcCHHHHHHHHHHHhcccCCCCEEEEEecc
Confidence 356776677788888885 899999999998853333344332 22 368899999988776 45555556
No 184
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=25.88 E-value=1.1e+02 Score=33.22 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCcceEEEe-eeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCC----C------
Q 005811 270 ELIRQEISHMKALNVDGVIVN-CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS----G------ 338 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvD-VWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVG----D------ 338 (676)
++++..+++|..+|++-|-+| ..|... +.. .=..|.++++.+-+ |++..+ ..|-|-||-+ |
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~----~~~-~~~~~v~~~n~~~~-g~~~~v--~~HvC~G~~~~~~~~~~~~~~ 227 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVF----FDE-VNDWGVAALERAIE-GLKCET--AVHICYGYGIKANTDWKKTLG 227 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhh----hHH-HHHHHHHHHHHHHc-CCCCce--EEEEeCCCCCCCccccccccc
Confidence 467889999999999999998 233310 000 02334444544443 667554 4599988863 1
Q ss_pred -----CccccCChhHHhhhccCCCeeeecCCCCc-ccCccccccccccc---cCCCchHHHHHHHHHHHHHHHhhhhc
Q 005811 339 -----DAWISLPQWVMEIGKGNQDIFFTDREGRR-NTECLSWGVDKERV---LNGRTGIEVYFDFMRSFRTEFDDLFV 407 (676)
Q Consensus 339 -----~~~IPLP~WV~e~g~~npDIfytDr~G~r-n~EyLSlg~D~~pV---l~GRTpiq~Y~DFMrSFr~~F~~~l~ 407 (676)
-..| +|. ..+.+-|.|+-+=...| ..|-|.+..|+.=+ ++-|+|.=.-.|.++.=-.++.++++
T Consensus 228 ~~~g~y~~i-~~~----l~~~~vd~~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~ 300 (339)
T PRK09121 228 SEWRQYEEA-FPK----LQKSNIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQFVD 300 (339)
T ss_pred cccccHHHH-HHH----HHhCCCCEEEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 0111 232 23567787765533222 23444433343211 24455544444444444445555553
No 185
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=25.82 E-value=93 Score=33.01 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=32.9
Q ss_pred HHHHHhcCcceEEEeeeeeeeccCCCcccc---chhHHHHHHHHHHcCCcE
Q 005811 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKV 323 (676)
Q Consensus 276 L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKl 323 (676)
+..++.+|++|||+|-+ .+.+..-|| +..-.+..+.+|+.||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 56789999999999976 455554444 555566778889999975
No 186
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=25.63 E-value=1.4e+02 Score=30.36 Aligned_cols=56 Identities=14% Similarity=0.015 Sum_probs=42.3
Q ss_pred hHHHHHHHhhcCcEEEEeeecC---CCCCCCCCCChHHHHHHHHHHHHhcCCcccccccc
Q 005811 561 YAPVFEVLKKHSVTMKFVCAVP---SLQDQEALADPEGLSWQVLNLAWDRGLAVAGENAL 617 (676)
Q Consensus 561 Y~pIa~mf~rh~v~l~FTClM~---d~e~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL 617 (676)
-..|++.+.+.|+...++|+.. +.+. -...--+.++..+....++.|+.++|||.-
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~-lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE 182 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESW-LGREIDEKYIEKLKALNKRYGINPAGEGGE 182 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHH-CCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 5779999999999999999822 2111 012222678888999999999999999974
No 187
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.44 E-value=1.5e+02 Score=30.66 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHhcCcceEEE--eeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccC
Q 005811 267 VDPELIRQEISHMKALNVDGVIV--NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (676)
Q Consensus 267 ~~~~al~~~L~~LK~~GVdGVmv--DVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 344 (676)
.+.+......+.++++|+||||+ +.|+..-+.+ -..+|++|++ ..+|.+...---...| ..|
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~-----l~~~~~~ia~---~~~~pi~lYn~P~~~g--------~~l 142 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEG-----LYAHFKAIAE---ATDLPVILYNVPGRTG--------VNI 142 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHH-----HHHHHHHHHh---cCCCCEEEEEChhHhC--------CCC
Q ss_pred ChhHHhhhccCCC-eeeecCCCC--cccCccccccccccccCC
Q 005811 345 PQWVMEIGKGNQD-IFFTDREGR--RNTECLSWGVDKERVLNG 384 (676)
Q Consensus 345 P~WV~e~g~~npD-IfytDr~G~--rn~EyLSlg~D~~pVl~G 384 (676)
+.-+.+.-.+.|. +.++|.+|. +-.+++..--+++.|+.|
T Consensus 143 s~~~~~~L~~~p~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G 185 (284)
T cd00950 143 EPETVLRLAEHPNIVGIKEATGDLDRVSELIALCPDDFAVLSG 185 (284)
T ss_pred CHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHhCCCCeEEEeC
No 188
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.43 E-value=1.9e+02 Score=31.17 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=62.4
Q ss_pred CCCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 005811 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (676)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv 325 (676)
...+|+-+|.=...|- ...+++=++.+|++|||||.|. +--++=+ .++.+.+++.||+...
T Consensus 92 ~~~~Pivlm~Y~Npi~-------~~Gie~F~~~~~~~GvdGlivp----------DLP~ee~--~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 92 GVKVPIVLMTYYNPIF-------NYGIEKFLRRAKEAGVDGLLVP----------DLPPEES--DELLKAAEKHGIDPIF 152 (265)
T ss_pred CCCCCEEEEEeccHHH-------HhhHHHHHHHHHHcCCCEEEeC----------CCChHHH--HHHHHHHHHcCCcEEE
Confidence 4668888887665543 3678889999999999999873 2222222 3688888999999988
Q ss_pred EEEeeccCCCCCCCccccCC-hhHHhhhccC-CCeeeecCCCCc
Q 005811 326 VMAFHEYGANDSGDAWISLP-QWVMEIGKGN-QDIFFTDREGRR 367 (676)
Q Consensus 326 VmSFHqCGGNVGD~~~IPLP-~WV~e~g~~n-pDIfytDr~G~r 367 (676)
+.+=- =| +++..+.+.- .-|+|..+.|..
T Consensus 153 lvaPt-------------t~~~rl~~i~~~a~GFiY~vs~~GvT 183 (265)
T COG0159 153 LVAPT-------------TPDERLKKIAEAASGFIYYVSRMGVT 183 (265)
T ss_pred EeCCC-------------CCHHHHHHHHHhCCCcEEEEeccccc
Confidence 87642 34 4554454433 349999997654
No 189
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=24.98 E-value=62 Score=40.04 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=44.5
Q ss_pred eeeeeeeccCCCccc---cchhHHH---HHHHHHHcCCcEEEEEEeeccCCCCCCCccccCCh-hHHh-hhccCCCeeee
Q 005811 290 NCWWGIVEGWNPQKY---AWSGYRE---LFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ-WVME-IGKGNQDIFFT 361 (676)
Q Consensus 290 DVWWGiVE~~~P~~Y---dWsgY~~---L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~-WV~e-~g~~npDIfyt 361 (676)
.|-=|.--+..++-| +|+-|+. |.+++++.|+|+.. ||.+||.||-.-. |.=. .+.+ .|..+-.|-+|
T Consensus 563 eVMlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~---FhGrGGsv~RGGg-p~~~ai~~qp~g~~~g~iR~T 638 (911)
T PRK00009 563 EVMLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTL---FHGRGGTVGRGGG-PAYAAILSQPPGSVKGRIRVT 638 (911)
T ss_pred EEEeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCCCC-hHHHHHHhCCCccccCceEEE
Confidence 444466555444444 7998875 56678999988776 9999999986543 2111 2222 14455557777
Q ss_pred cCC
Q 005811 362 DRE 364 (676)
Q Consensus 362 Dr~ 364 (676)
-|.
T Consensus 639 eQG 641 (911)
T PRK00009 639 EQG 641 (911)
T ss_pred eec
Confidence 664
No 190
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=24.96 E-value=1.3e+02 Score=33.15 Aligned_cols=61 Identities=8% Similarity=-0.049 Sum_probs=44.2
Q ss_pred HHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCC
Q 005811 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (676)
Q Consensus 275 ~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGN 335 (676)
..+.+|.+|+|+|.+=|+||.-+...-+.-....-.+|.+-|++.||-+.+-+-...-|++
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~ 171 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGS 171 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcc
Confidence 4567899999999999999943221115567777889999999999998774334444444
No 191
>PLN02564 6-phosphofructokinase
Probab=24.50 E-value=3.4e+02 Score=31.67 Aligned_cols=87 Identities=21% Similarity=0.281 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHh
Q 005811 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVME 350 (676)
Q Consensus 271 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e 350 (676)
..++-++.||..|++++.+= .|++ -..+=..|.+.+++.|+++.+|- +|+=+
T Consensus 164 ~~~~iv~~L~~~~Id~LivI--------GGDG--S~~gA~~L~e~~~~~g~~i~VIG----------------IPKTI-- 215 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYII--------GGDG--TQKGASVIYEEIRRRGLKVAVAG----------------IPKTI-- 215 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEE--------CCch--HHHHHHHHHHHHHHcCCCceEEE----------------ecccc--
Confidence 34566889999999998652 3444 34577788999999999987752 56533
Q ss_pred hhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhh
Q 005811 351 IGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLF 406 (676)
Q Consensus 351 ~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l 406 (676)
|.||.+||. |||.| |+++...+-..+.+++-...-
T Consensus 216 ----DNDI~~tD~---------T~GFd--------TAv~~~~~aI~~i~~tA~S~~ 250 (484)
T PLN02564 216 ----DNDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESVE 250 (484)
T ss_pred ----cCCCcCccc---------CCCHH--------HHHHHHHHHHHHHHHHHHhcC
Confidence 459999985 56665 578999999999988877654
No 192
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=24.45 E-value=6.3e+02 Score=26.30 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
.++.+..-|++|.++|+..|.+|+-- .|+ ..++=.+.+.|++.+++.|=++..-..|+
T Consensus 62 ~R~~~A~ll~~L~~~ga~~I~~Di~f--~~~---~~~~~~~D~~la~al~~~~~~vvl~~~~~ 119 (310)
T PF05226_consen 62 PRSVYARLLDRLAAAGAKAIGFDILF--DEP---DPSNPEGDQALAEALRRAGNRVVLASVFS 119 (310)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeee--cCC---CCCCchHHHHHHHHHHhCCCeEEEEEecc
Confidence 66889999999999999999999954 444 21211288999999999986655433344
No 193
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=24.25 E-value=1.4e+02 Score=30.26 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=53.8
Q ss_pred HHHHHHHhhcCcEEEEeee-cCCCCCCCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCCCCCC
Q 005811 562 APVFEVLKKHSVTMKFVCA-VPSLQDQEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRNDPDR 640 (676)
Q Consensus 562 ~pIa~mf~rh~v~l~FTCl-M~d~e~~~a~s~Pe~Lv~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~~a~~~~~~~~ 640 (676)
..+.+.++++|..+.+.++ ..|-.. .....++..+.+|+..+..-.|-|.=.+.. ...++..+|++.++.
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~-~~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~------ 212 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKV-DEQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKE------ 212 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCC-CCCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHH------
Confidence 4578899999999998887 444332 122457888899987665544554433211 124688999988873
Q ss_pred CcccceEeecCCcc
Q 005811 641 RHFSFFMYQQPSSL 654 (676)
Q Consensus 641 ~~~~~FTyLRm~~~ 654 (676)
.+|+|.++.+.
T Consensus 213 ---~Gy~fvtl~el 223 (224)
T TIGR02884 213 ---QGYTFKSLDDL 223 (224)
T ss_pred ---CCCEEEEhHHc
Confidence 46888877654
No 194
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=24.18 E-value=82 Score=35.24 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=41.8
Q ss_pred HHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChh
Q 005811 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (676)
Q Consensus 275 ~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~W 347 (676)
.|..++++||+||... +-.--....+.-.--+++=++|.++||.|-||=|. +|-++..+-+|.|
T Consensus 15 ~l~~irQ~Gv~gIV~a----Lh~iP~g~~W~~~~I~~~k~~ie~~Gl~~~vvESv-----PvhedIK~g~~~r 78 (362)
T COG1312 15 TLEDIRQAGVKGVVTA----LHHIPAGEVWPVEEILKRKEEIESAGLTWSVVESV-----PVHEDIKLGTPTR 78 (362)
T ss_pred cHHHHHHhCccceecc----CCCCCCCCcCcHHHHHHHHHHHHHcCceEEeecCC-----CHHHHHHhcCCcH
Confidence 4677888899999753 22222222344455678889999999999999775 3334444444444
No 195
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=23.72 E-value=1.4e+02 Score=34.46 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeec
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
+.+.|....+.++++|..+||+|+++ +-|++-+.|.+.+++.+|-|+.=-++|.
T Consensus 246 ~~~em~~ra~~a~e~G~~~~mv~~~~----------~G~~al~~l~~~~~~~~l~IhaHrA~~g 299 (475)
T CHL00040 246 TCEEMYKRAVFARELGVPIVMHDYLT----------GGFTANTSLAHYCRDNGLLLHIHRAMHA 299 (475)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeccc----------cccchHHHHHHHhhhcCceEEecccccc
Confidence 57999999999999999999999876 2466677777777888877776666663
No 196
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.42 E-value=3.4e+02 Score=25.01 Aligned_cols=57 Identities=9% Similarity=0.156 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
..+.+...++.|+++|.-.|.+.+.-|+.. .+.....++++.+++.|.+-..+..|.
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~ 190 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLPG------ETEEDFEETLKLLKELGPDRVSIFPLS 190 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCCC------CCHHHHHHHHHHHHHcCCCeEEeeeee
Confidence 348888899999999953466666666552 267888999999999999865665554
No 197
>PRK14706 glycogen branching enzyme; Provisional
Probab=23.29 E-value=1.7e+02 Score=34.73 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=44.0
Q ss_pred cccCHHHHHHHH-HHHHhcCcceEEEeeeeeeeccCCCccccchh-----------------HHHHHHHHHHcCCcEEEE
Q 005811 265 QLVDPELIRQEI-SHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----------------YRELFNIIREFNLKVQVV 326 (676)
Q Consensus 265 ~l~~~~al~~~L-~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg-----------------Y~~L~~mvr~~GLKlqvV 326 (676)
.+-.-+++...| ..||++||..|++=- |.|- |...+|-| .++|.+.+.++|++|..=
T Consensus 162 ~~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD 236 (639)
T PRK14706 162 WFLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILD 236 (639)
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 344567788887 789999999998632 4453 44556644 688999999999998765
Q ss_pred EEee
Q 005811 327 MAFH 330 (676)
Q Consensus 327 mSFH 330 (676)
+-+.
T Consensus 237 ~v~n 240 (639)
T PRK14706 237 WVPG 240 (639)
T ss_pred eccc
Confidence 5553
No 198
>PRK15108 biotin synthase; Provisional
Probab=23.17 E-value=1.1e+02 Score=33.33 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCCccc-------cchhHHHHHHHHHHcCCcE
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------AWSGYRELFNIIREFNLKV 323 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y-------dWsgY~~L~~mvr~~GLKl 323 (676)
...|++||++|||+|-+++ |. .|.-| +|....+..+.++++|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~l-----eT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNL-----DT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeecc-----cc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 6789999999999887754 22 22221 5666677777778889855
No 199
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=23.07 E-value=2.6e+02 Score=34.63 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccc-------------cchhHHHHHHHHHHcCCcEEEEEEeeccCC
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y-------------dWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 334 (676)
+.+++.+.|..||.+||+.|.+---+--.. .+..-| ....+++|.+.+++.|++|.+=+-+.-++.
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~-gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~ 92 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVP-GSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMAV 92 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCC-CCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 457899999999999999996644332111 122233 367899999999999999988777766653
No 200
>PLN03231 putative alpha-galactosidase; Provisional
Probab=23.01 E-value=1.2e+02 Score=33.75 Aligned_cols=57 Identities=12% Similarity=0.257 Sum_probs=36.8
Q ss_pred HHHHhcCcceEEEeeeeeeecc----------------CCCccc-----cch------hHHHHHHHHHHcCCcEEEEE--
Q 005811 277 SHMKALNVDGVIVNCWWGIVEG----------------WNPQKY-----AWS------GYRELFNIIREFNLKVQVVM-- 327 (676)
Q Consensus 277 ~~LK~~GVdGVmvDVWWGiVE~----------------~~P~~Y-----dWs------gY~~L~~mvr~~GLKlqvVm-- 327 (676)
+.||.+|-+-|.||.=|-.-++ ..-++. -|- |.+.|++.|.+.|||+=...
T Consensus 29 ~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKfGIY~~~ 108 (357)
T PLN03231 29 ETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKLGIHVMR 108 (357)
T ss_pred cchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCcceEEEecC
Confidence 4789999999999855532111 111222 222 89999999999999984432
Q ss_pred EeeccC
Q 005811 328 AFHEYG 333 (676)
Q Consensus 328 SFHqCG 333 (676)
-.+-|.
T Consensus 109 G~~tca 114 (357)
T PLN03231 109 GISTTA 114 (357)
T ss_pred Cccchh
Confidence 334454
No 201
>PRK02227 hypothetical protein; Provisional
Probab=22.93 E-value=1.1e+02 Score=32.55 Aligned_cols=46 Identities=11% Similarity=-0.019 Sum_probs=34.6
Q ss_pred HHHHHHHhcCcceEEEeeeeeeeccCCCcc---ccchhHHHHHHHHHHcCCcE
Q 005811 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWSGYRELFNIIREFNLKV 323 (676)
Q Consensus 274 ~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~---YdWsgY~~L~~mvr~~GLKl 323 (676)
.-+..++++|++|+|+|-+ ++.+-.- +++..-.++.+++|+.||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4567889999999999965 4444443 45666677788899999975
No 202
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=22.85 E-value=69 Score=34.24 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=25.6
Q ss_pred CCcccCHHHHHHHHHHHHhcCcceEEEeeeee
Q 005811 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWG 294 (676)
Q Consensus 263 ~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWG 294 (676)
+++|.-...++...++|+ .|+--|++|||=|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg 53 (257)
T cd08595 23 SDQLVGPSDLDGYVSALR-KGCRCLEIDCWDG 53 (257)
T ss_pred CCcccCcccHHHHHHHHH-hCCcEEEEEeecC
Confidence 356777777888888888 8999999999975
No 203
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=22.71 E-value=1.5e+03 Score=28.00 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=41.8
Q ss_pred ccCHHHH-HHHHHHHHhcCcceEEEeeeeeeeccCCCccccc-----------------hhHHHHHHHHHHcCCcEEEEE
Q 005811 266 LVDPELI-RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-----------------SGYRELFNIIREFNLKVQVVM 327 (676)
Q Consensus 266 l~~~~al-~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW-----------------sgY~~L~~mvr~~GLKlqvVm 327 (676)
+..-++| +..|..||.+||+.|.+=- |.|. +....| ...++|++.+.+.||+|..=+
T Consensus 246 ~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 246 VNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4455676 4569999999999997641 2232 111233 348999999999999987655
Q ss_pred Ee-ecc
Q 005811 328 AF-HEY 332 (676)
Q Consensus 328 SF-HqC 332 (676)
-+ |.|
T Consensus 321 V~nH~~ 326 (758)
T PLN02447 321 VHSHAS 326 (758)
T ss_pred cccccc
Confidence 55 544
No 204
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=22.66 E-value=1.9e+02 Score=31.36 Aligned_cols=64 Identities=25% Similarity=0.322 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChh
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~W 347 (676)
+.++....|+.+|++|+.- |||. .|.-+-= -=..|.++.++.|+.|.+.=-||.- --.|.|
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~-T~~g~GR-d~~~l~~is~~tGv~II~~TG~y~~---------~~~p~~ 96 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDA-TPIGLGR-DVEALREISRRTGVNIIASTGFYKE---------PFYPEW 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE-SG---------GCSCHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEec-CCcccCc-CHHHHHHHHHHhCCeEEEeCCCCcc---------ccCChh
Confidence 7789999999999999877 5664 3332221 1267888889999999888888842 136788
Q ss_pred HHh
Q 005811 348 VME 350 (676)
Q Consensus 348 V~e 350 (676)
+.+
T Consensus 97 ~~~ 99 (308)
T PF02126_consen 97 VRE 99 (308)
T ss_dssp HHT
T ss_pred hhc
Confidence 764
No 205
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=22.51 E-value=2.6e+02 Score=30.57 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCCccc----------cchhHHHHHHHHHHcCCc
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKY----------AWSGYRELFNIIREFNLK 322 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y----------dWsgY~~L~~mvr~~GLK 322 (676)
..+++.||++||+++.+-+ |.-.+..| +|..-.+-.+.++++|++
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3567999999999998853 43223332 455556778999999997
No 206
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=22.42 E-value=1.4e+02 Score=33.81 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
+.+.|....+.++++|..+||||+++. -|+.-+.|.+.+++.+|-|+.=-+||
T Consensus 222 ~~~em~~ra~~~~~~G~~~~mv~~~~~----------G~~~l~~l~~~~~~~~l~ih~Hra~~ 274 (412)
T TIGR03326 222 PVREMERRAELVADLGGQYVMVDVVVC----------GWSALQYIRELTEDLGLAIHAHRAMH 274 (412)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeecc----------chHHHHHHHHhhccCCeEEEEcCCcc
Confidence 458999999999999999999998763 45555555555556666666555555
No 207
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=22.36 E-value=84 Score=30.32 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=15.5
Q ss_pred HHHHHHhcCcceEEEeeeee
Q 005811 275 EISHMKALNVDGVIVNCWWG 294 (676)
Q Consensus 275 ~L~~LK~~GVdGVmvDVWWG 294 (676)
.+++..++|+++|++||+.-
T Consensus 15 af~~A~~~G~~~iE~Dv~lT 34 (256)
T PF03009_consen 15 AFRAAIELGADGIELDVQLT 34 (256)
T ss_dssp HHHHHHHTTSSEEEEEEEE-
T ss_pred HHHHHHHhCCCeEccccccc
Confidence 44555688999999999974
No 208
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.23 E-value=3.7e+02 Score=21.79 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEE
Q 005811 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (676)
Q Consensus 271 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvV 326 (676)
.++.-++++|+.|.+.|- |.+-. +-.++.++.+.+++.|+|+.+=
T Consensus 16 ~~~~~~~~a~~~g~~~v~------iTDh~-----~~~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIA------ITDHG-----NLFGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEE------EeeCC-----cccCHHHHHHHHHHcCCeEEEE
Confidence 366788999999999984 45542 5677889999999999887653
No 209
>PRK15108 biotin synthase; Provisional
Probab=22.00 E-value=2.3e+02 Score=30.87 Aligned_cols=51 Identities=14% Similarity=0.246 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcE
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 323 (676)
+++.|....+.++..|+.-|.+=.=| ..|...++.+|.++++.||+.|+++
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g-----~~p~~~~~e~i~~~i~~ik~~~i~v 127 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAW-----KNPHERDMPYLEQMVQGVKAMGLET 127 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecC-----CCCCcchHHHHHHHHHHHHhCCCEE
Confidence 55888888899999999988442111 1465667899999999999988753
No 210
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=21.80 E-value=75 Score=26.77 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhh
Q 005811 383 NGRTGIEVYFDFMRSFRTEFDDLF 406 (676)
Q Consensus 383 ~GRTpiq~Y~DFMrSFr~~F~~~l 406 (676)
++++....++||.++||++|..-.
T Consensus 37 ~~~~~~~~~~~f~~~fk~nf~~~~ 60 (77)
T PF04854_consen 37 RDEEDSYLFRDFWRAFKQNFKQSL 60 (77)
T ss_pred cCCccChHHHHHHHHHHHHHHHHH
Confidence 444456799999999999998754
No 211
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=21.76 E-value=2.2e+02 Score=27.92 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEee
Q 005811 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (676)
Q Consensus 272 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 330 (676)
++.-++.++.+|++.|.+--+ ++..++.+++++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~------------~~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGT------------DLEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecC------------CHHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 566678888999999873221 1256678899999999 999999998
No 212
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=21.64 E-value=2e+02 Score=30.96 Aligned_cols=56 Identities=18% Similarity=0.353 Sum_probs=39.4
Q ss_pred CcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---c---hhHHHHHHHHHHcCCc
Q 005811 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---W---SGYRELFNIIREFNLK 322 (676)
Q Consensus 264 ~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---W---sgY~~L~~mvr~~GLK 322 (676)
++|.-....+.-.++|+ .|+--|++|||=|-- ..|-.|- + =..+++.+.|++.+.+
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg~~--~eP~V~HG~tlts~i~f~~v~~~I~~~AF~ 85 (258)
T cd08630 24 SQIGGPSSTEAYVRAFA-QGCRCVELDCWEGPG--GEPVIYHGHTLTSKILFRDVIQAVRQHAFT 85 (258)
T ss_pred CcccCcccHHHHHHHHH-cCCcEEEEEeecCCC--CCcEEeeCCccccceEHHHHHHHHHHHhcc
Confidence 56666666777777774 899999999997732 1243332 1 2358999999998776
No 213
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.46 E-value=2.5e+02 Score=29.78 Aligned_cols=51 Identities=25% Similarity=0.332 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEE
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv 325 (676)
+.+.+.+.++.++..|++.|.+ |-...| .+++..|.++++.|++.+.++.+
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l------~gg~~~-~~~~~~~~~i~~~Ik~~~~~i~~ 87 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCI------QGGLNP-QLDIEYYEELFRAIKQEFPDVHI 87 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE------ecCCCC-CCCHHHHHHHHHHHHHHCCCceE
Confidence 5578888899999999998876 322234 36788999999999999876654
No 214
>PRK06233 hypothetical protein; Provisional
Probab=21.37 E-value=1.9e+02 Score=31.78 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcCcceEEEe-eeeee-eccCCC-cc--ccchhHHHHHHH-------HHHcCCcEEEEEEeeccCCCCC
Q 005811 270 ELIRQEISHMKALNVDGVIVN-CWWGI-VEGWNP-QK--YAWSGYRELFNI-------IREFNLKVQVVMAFHEYGANDS 337 (676)
Q Consensus 270 ~al~~~L~~LK~~GVdGVmvD-VWWGi-VE~~~P-~~--YdWsgY~~L~~m-------vr~~GLKlqvVmSFHqCGGNVG 337 (676)
++++..+++|..+|++.|-+| ..|+. .+.... .. -.|..|.++++. +- .|+.--+.+++|-|-||..
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~-~~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKAL-ADLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHH-hCCCcCCEEEEEeeCCCCC
Confidence 577888999999999999997 45552 221111 01 124445444333 22 2565456679999988864
Q ss_pred CCccc--cCChhHHhhhccCCCeeeecCCCCc--ccCccc-ccc---cccc---ccCCCchHHHHHHHHHHHHHHHhhhh
Q 005811 338 GDAWI--SLPQWVMEIGKGNQDIFFTDREGRR--NTECLS-WGV---DKER---VLNGRTGIEVYFDFMRSFRTEFDDLF 406 (676)
Q Consensus 338 D~~~I--PLP~WV~e~g~~npDIfytDr~G~r--n~EyLS-lg~---D~~p---Vl~GRTpiq~Y~DFMrSFr~~F~~~l 406 (676)
..-.. +.-.=.....+.+.|.||-+=...| +-|.|. ++. ++.= |++-++|.=.-.|.++.=-.++.+|+
T Consensus 250 ~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~v 329 (372)
T PRK06233 250 STYLFSGGYEPVAKYLGQLNYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARIDEATEYV 329 (372)
T ss_pred CcccccCcHHHHHHHHHhCCCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHhC
Confidence 21111 0001111223566776665433222 224444 221 2211 12445555455555555555555555
No 215
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=21.31 E-value=4.4e+02 Score=31.04 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=46.3
Q ss_pred HHHHHHHHHH---hcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCC---CCc-ccc
Q 005811 271 LIRQEISHMK---ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS---GDA-WIS 343 (676)
Q Consensus 271 al~~~L~~LK---~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVG---D~~-~IP 343 (676)
.++.+++.|| .+|++.+.+.+- ||=..|.++.+.++..+++|.+=+.--....+.- ..+ .|.
T Consensus 476 ~~~~d~~~L~~Ki~aGAdf~iTQ~~-----------fd~~~~~~~~~~~~~~~vpIi~GImPi~s~k~~~~~~~~~~Gv~ 544 (612)
T PRK08645 476 NLDKEVKRLEKKIEAGADYFITQPV-----------YDEELIEELLEATKHLGVPIFIGIMPLVSYRNAEFLHNEVPGIT 544 (612)
T ss_pred ChHHHHHHHHHHHHcCCCEEEeccc-----------CCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHHHHHHhCCCCCC
Confidence 3556665555 589999987654 5668899999999977777655333111111000 122 488
Q ss_pred CChhHHhhhcc
Q 005811 344 LPQWVMEIGKG 354 (676)
Q Consensus 344 LP~WV~e~g~~ 354 (676)
+|+|+.+.-+.
T Consensus 545 vP~~l~~~l~~ 555 (612)
T PRK08645 545 LPEEIRERMRA 555 (612)
T ss_pred CCHHHHHHHHh
Confidence 99999986443
No 216
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=21.20 E-value=1.7e+02 Score=29.62 Aligned_cols=57 Identities=30% Similarity=0.500 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeec
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHq 331 (676)
+.+++++.+++||+ ++|-|.|=+=||.-....|. ..-++++.-+-+.| +-+|+.=|.
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p~----~~~~~~A~~l~~~G--~DvIiG~H~ 214 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEPT----DEQRELAHALIDAG--ADVVIGHHP 214 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCCC----HHHHHHHHHHHHcC--CCEEEcCCC
Confidence 46889999999998 79999999999984433332 23367777777788 456777664
No 217
>PRK05402 glycogen branching enzyme; Provisional
Probab=20.95 E-value=2.2e+02 Score=34.11 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=43.4
Q ss_pred CcccCHHHHHHHH-HHHHhcCcceEEEeeeeeeeccCCCccccch-----------------hHHHHHHHHHHcCCcEEE
Q 005811 264 CQLVDPELIRQEI-SHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQV 325 (676)
Q Consensus 264 ~~l~~~~al~~~L-~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs-----------------gY~~L~~mvr~~GLKlqv 325 (676)
+..-+-++|...| ..||++||+.|.+== |.|. |...+|. ..++|++-+.+.||+|..
T Consensus 259 ~~~g~~~~i~~~l~~ylk~LGv~~i~L~P---i~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 259 GRFLSYRELADQLIPYVKEMGFTHVELLP---IAEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred CcccCHHHHHHHHHHHHHHcCCCEEEECC---cccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3344568888886 999999999997632 1231 2222332 268999999999999876
Q ss_pred EEEeecc
Q 005811 326 VMAFHEY 332 (676)
Q Consensus 326 VmSFHqC 332 (676)
=+-|--|
T Consensus 334 D~V~NH~ 340 (726)
T PRK05402 334 DWVPAHF 340 (726)
T ss_pred EECCCCC
Confidence 6656334
No 218
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=20.88 E-value=1.8e+02 Score=31.29 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=45.4
Q ss_pred CCcccCHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCcccc---ch---hHHHHHHHHHHcCCc-----EEEEEEee
Q 005811 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK-----VQVVMAFH 330 (676)
Q Consensus 263 ~~~l~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---Ws---gY~~L~~mvr~~GLK-----lqvVmSFH 330 (676)
+++|.-....+.-.++|+ .|+--|++|||=|---...|-.|- +. ..+++.+.|++.+.+ |...|--|
T Consensus 23 g~Ql~g~ss~e~y~~aL~-~GcRcvElD~Wdg~~~~~eP~V~HG~tlts~i~f~~v~~aIk~~AF~~s~yPvIlslE~H 100 (257)
T cd08591 23 GRQFGGKSSVEMYRQVLL-SGCRCIELDCWDGKGEDEEPIITHGKTMCTEILFKDVIEAIAETAFKTSEYPVILSFENH 100 (257)
T ss_pred CCcccCcccHHHHHHHHH-hCCcEEEEEeecCCCCCCCCEEeeCCCCccCeEHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 356666677777788887 899999999998852101233332 22 358899999997776 45555556
No 219
>PLN02784 alpha-amylase
Probab=20.67 E-value=2e+02 Score=35.85 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccch-------------hHHHHHHHHHHcCCcEEEEEEe-eccCC
Q 005811 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-------------GYRELFNIIREFNLKVQVVMAF-HEYGA 334 (676)
Q Consensus 269 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs-------------gY~~L~~mvr~~GLKlqvVmSF-HqCGG 334 (676)
++.|...|..|+.+||++|-+.- +.+..++.-|+-. .+++|++.+++.|+|+.+=+-+ |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP---~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPP---PTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCC---CCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 68999999999999999998765 2344344445433 4788999999999998765544 66654
No 220
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.66 E-value=2.9e+02 Score=27.20 Aligned_cols=107 Identities=13% Similarity=0.016 Sum_probs=62.9
Q ss_pred HHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhcc
Q 005811 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKG 354 (676)
Q Consensus 275 ~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~ 354 (676)
.+.+||+.||+.|.+=+.-|. . |.=..|.+-.+-++++||++-+..=++.|. +. ..==.++++.
T Consensus 16 d~~~vk~~gi~fviiKateG~------~-~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~----~~--~~qA~~f~~~--- 79 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEGG------D-HVDKRFAENWRGARAAGLPRGAYHFFTFCR----SG--AEQAANFIRN--- 79 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCCC------C-ccCHHHHHHHHHHHHcCCceEEEEEEecCC----CH--HHHHHHHHHh---
Confidence 367788999999999986442 2 333667777788999999998887777543 11 0000123222
Q ss_pred CCCeeeecCCCCcccCccccccccccccCC--CchHHHHHHHHHHHHHHHhhhhc
Q 005811 355 NQDIFFTDREGRRNTECLSWGVDKERVLNG--RTGIEVYFDFMRSFRTEFDDLFV 407 (676)
Q Consensus 355 npDIfytDr~G~rn~EyLSlg~D~~pVl~G--RTpiq~Y~DFMrSFr~~F~~~l~ 407 (676)
-+... .-+-+++|-+.--.. ........+.++.|.++++...+
T Consensus 80 ---------~~~~~-~~~~~~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~~G 124 (191)
T cd06413 80 ---------VPKDP-GALPPVVDVEWNGNSATCPSAEEVLAELQVFLDALEAHYG 124 (191)
T ss_pred ---------cCCCC-CcCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 22111 122235555432111 12345677888888888876543
No 221
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=20.62 E-value=1.1e+02 Score=30.04 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCccEEEEeeceeecCCCcccCHHHHHHHHHHHHhcCcceEEEe
Q 005811 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVN 290 (676)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~al~~~L~~LK~~GVdGVmvD 290 (676)
.+++|+|. +|++ .+.++.|..+|||||.+|
T Consensus 198 ~g~~v~~w----Tvn~----------~~~~~~~~~~gVdgiiTD 227 (229)
T cd08562 198 AGYKLLVY----TVND----------PARAAELLEWGVDAIFTD 227 (229)
T ss_pred CCCEEEEE----eCCC----------HHHHHHHHHCCCCEEEcC
No 222
>PRK08445 hypothetical protein; Provisional
Probab=20.56 E-value=1.5e+02 Score=32.42 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCcc---eEEEe-----eeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEe
Q 005811 272 IRQEISHMKALNVD---GVIVN-----CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (676)
Q Consensus 272 l~~~L~~LK~~GVd---GVmvD-----VWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSF 329 (676)
.+.+|++||++|++ |+.+. |= +.-.|++..-..|.+..+.++++||++-.-|=|
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~----~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVR----DIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHH----HhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
No 223
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.52 E-value=8.5e+02 Score=26.03 Aligned_cols=131 Identities=12% Similarity=0.203 Sum_probs=80.3
Q ss_pred cccCHHHHHHHHHHHHhcCcceEEEee-----eeeeeccCC-CccccchhHHHHHHHHHHcCCcEEEEEEe---------
Q 005811 265 QLVDPELIRQEISHMKALNVDGVIVNC-----WWGIVEGWN-PQKYAWSGYRELFNIIREFNLKVQVVMAF--------- 329 (676)
Q Consensus 265 ~l~~~~al~~~L~~LK~~GVdGVmvDV-----WWGiVE~~~-P~~YdWsgY~~L~~mvr~~GLKlqvVmSF--------- 329 (676)
.+-..+.|++.++.|...|..++.+-. +-|.-|-.. .+.|.=.-+++|.+.+++.|+.|+|-+-+
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~ 91 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK 91 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh
Confidence 456679999999999999999887622 233333322 56777888999999999999999987532
Q ss_pred ----eccCCCCC---CCccccCCh---hHHhhhccCCCeeeecCCCCcccCccccccccccccC---------CCchHHH
Q 005811 330 ----HEYGANDS---GDAWISLPQ---WVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLN---------GRTGIEV 390 (676)
Q Consensus 330 ----HqCGGNVG---D~~~IPLP~---WV~e~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~---------GRTpiq~ 390 (676)
+... .+. +..++.-|. .|.+.-++--++ |. .+++-+|+|+...+. .++..+.
T Consensus 92 ~~~~~~l~-~~~~~~~~l~~~~~~t~~fi~~li~ev~~~-f~-------s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 92 HPEFRHLR-EVDDPPQTLCPGEPKTYDFIEEMIRQVLEL-HP-------SKYIHIGMDEAYDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred Cccccccc-ccCCCCCccCCCChhHHHHHHHHHHHHHHh-CC-------CCeEEECCCcccccCCCHHHHHhcCCCHHHH
Confidence 2111 111 122222232 111111111111 22 588999999987652 3456677
Q ss_pred HHHHHHHHHHHHhh
Q 005811 391 YFDFMRSFRTEFDD 404 (676)
Q Consensus 391 Y~DFMrSFr~~F~~ 404 (676)
|.+|++.-.+....
T Consensus 163 ~~~~~~~v~~~v~~ 176 (301)
T cd06565 163 YLEHLKKVLKIIKK 176 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 87887766665544
No 224
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.51 E-value=5.4e+02 Score=27.74 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=68.4
Q ss_pred HHHHHHHhcCcc-eEEEeeeeeeeccCCCccccchhHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc--ccCChhHHh
Q 005811 274 QEISHMKALNVD-GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW--ISLPQWVME 350 (676)
Q Consensus 274 ~~L~~LK~~GVd-GVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~--IPLP~WV~e 350 (676)
.-|+.|+++|+. .|++ +...|+.. .....+-++.++++|+++..-.-... .|+|+.. ..|=.|+.+
T Consensus 188 ell~~L~~~g~~v~i~l-------~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl~---gvNd~~~~l~~l~~~l~~ 256 (321)
T TIGR03822 188 ALIAALKTSGKTVYVAL-------HANHAREL-TAEARAACARLIDAGIPMVSQSVLLR---GVNDDPETLAALMRAFVE 256 (321)
T ss_pred HHHHHHHHcCCcEEEEe-------cCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeEeC---CCCCCHHHHHHHHHHHHh
Confidence 345678888843 2333 33345554 57788888899999998866555542 2566643 445667766
Q ss_pred hhccCCCeeeecCCCCcccCccccccccccccCCCchHHHHHHHHHHHHHHHhhhhc
Q 005811 351 IGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (676)
Q Consensus 351 ~g~~npDIfytDr~G~rn~EyLSlg~D~~pVl~GRTpiq~Y~DFMrSFr~~F~~~l~ 407 (676)
.|-..--++..|..+.. -+-+++++.+.++|+..+...+.|.-
T Consensus 257 ~gv~pyyl~~~~p~~g~--------------~~f~~~~~~~~~i~~~l~~~~~g~~~ 299 (321)
T TIGR03822 257 CRIKPYYLHHLDLAPGT--------------AHFRVTIEEGQALVRALRGRISGLAQ 299 (321)
T ss_pred cCCeeEEEEecCCCCCc--------------ccccCcHHHHHHHHHHHHHhCCCCcc
Confidence 54333234445555331 12257889999999999998888764
No 225
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=20.43 E-value=4.6e+02 Score=28.20 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=58.0
Q ss_pred cccCHHHHHHHHHHHHhcC--cceEEEeeeeeeeccCCCccccch-----hHHHHHHHHHHcCCcEEEEEEeeccCCCCC
Q 005811 265 QLVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (676)
Q Consensus 265 ~l~~~~al~~~L~~LK~~G--VdGVmvDVWWGiVE~~~P~~YdWs-----gY~~L~~mvr~~GLKlqvVmSFHqCGGNVG 337 (676)
...+.+.+.+-.+.+++.| +|+|.+|+=|.- +-+.|+|. .-+++++-.++.|+|+.+++.=|-+-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~---- 90 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV---- 90 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC----
Confidence 3457788888888888866 689999966641 23335554 35799999999999997766544321
Q ss_pred CCccccCChhHHhhhccCCCeeeecCCCC
Q 005811 338 GDAWISLPQWVMEIGKGNQDIFFTDREGR 366 (676)
Q Consensus 338 D~~~IPLP~WV~e~g~~npDIfytDr~G~ 366 (676)
+. +.-+-+++.+ .+.|.++.+|.
T Consensus 91 -~~----~~~~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 91 -DP----GYDVYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred -CC----CChHHHHHHH-CCeEEECCCCC
Confidence 00 1123344444 37888998874
No 226
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.42 E-value=2e+02 Score=28.53 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHcC
Q 005811 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFN 320 (676)
Q Consensus 268 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~G 320 (676)
|.+++++.++.||..||+.|.|=.=|+.+-+. .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 67999999999999999999997777766542 3466777877765
No 227
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=20.34 E-value=2.1e+02 Score=29.30 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCCccccchhHHHHHHHHHHc
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~ 319 (676)
.+-++.++..|.|||.+|..|.-.+ ...|.++++.+|+.
T Consensus 89 ~~lv~~~~~~~~DGIdiDwE~~~~~--------~~~~~~fv~~Lr~~ 127 (253)
T cd06545 89 DKIINYVVSYNLDGIDVDLEGPDVT--------FGDYLVFIRALYAA 127 (253)
T ss_pred HHHHHHHHHhCCCceeEEeeccCcc--------HhHHHHHHHHHHHH
Confidence 4445667889999999999885432 35677777777654
No 228
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=20.23 E-value=2.8e+02 Score=30.49 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcceEEEeeeeeeeccCCCc----------cccchhHHHHHHHHHHcCCc-EEEEEEeeccCCCCCCCcc
Q 005811 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQ----------KYAWSGYRELFNIIREFNLK-VQVVMAFHEYGANDSGDAW 341 (676)
Q Consensus 273 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~----------~YdWsgY~~L~~mvr~~GLK-lqvVmSFHqCGGNVGD~~~ 341 (676)
..+++.||.+||++|++-+ |...+. ..+|..-.+-.+.++++|++ +-..+=+-
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~G----------- 226 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLG----------- 226 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEec-----------
Q ss_pred ccCChhHHhh
Q 005811 342 ISLPQWVMEI 351 (676)
Q Consensus 342 IPLP~WV~e~ 351 (676)
|+.|..+.
T Consensus 227 --lge~~~d~ 234 (371)
T PRK09240 227 --LSDWRTDA 234 (371)
T ss_pred --CCccHHHH
No 229
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=20.23 E-value=83 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHHhcCcceEEEeeeee----ee-----ccCCCccccch-hHHHHHHHHHHcC
Q 005811 276 ISHMKALNVDGVIVNCWWG----IV-----EGWNPQKYAWS-GYRELFNIIREFN 320 (676)
Q Consensus 276 L~~LK~~GVdGVmvDVWWG----iV-----E~~~P~~YdWs-gY~~L~~mvr~~G 320 (676)
|...-++|+++|++|||.- +| +. .+.+-=|+ ++..|.++++..+
T Consensus 15 l~~Al~~g~~svEaDV~l~dg~l~V~Hd~~~l-~~~~tl~~Lyl~pL~~~l~~~n 68 (228)
T cd08577 15 LYDALSAGFGSIEADVWLVNGDLLVAHDEVDL-SPARTLESLYLDPLLEILDQNN 68 (228)
T ss_pred hHHHHHcCCCEEEEeEEEECCEEEEEcChhHc-CccCCHHHHhHHHHHHHHHHcC
Confidence 4445678999999999985 11 11 23333344 5677888887764
Done!