Query 005812
Match_columns 676
No_of_seqs 345 out of 3955
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 14:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0127 Nucleolar protein fibr 100.0 1.9E-60 4.1E-65 480.8 34.4 493 121-672 5-527 (678)
2 TIGR01628 PABP-1234 polyadenyl 100.0 4.8E-50 1E-54 450.7 40.8 357 123-675 2-364 (562)
3 TIGR01628 PABP-1234 polyadenyl 100.0 1.7E-47 3.8E-52 429.9 36.0 328 1-514 32-368 (562)
4 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.7E-46 1E-50 407.4 45.4 433 121-660 2-462 (481)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.3E-43 1.4E-47 371.6 35.9 343 122-511 4-350 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.6E-42 7.7E-47 365.8 32.3 316 215-676 2-350 (352)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.9E-39 4E-44 355.3 40.3 337 9-510 36-480 (481)
8 KOG0123 Polyadenylate-binding 100.0 8.5E-40 1.8E-44 339.0 30.2 345 123-673 3-347 (369)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 1.3E-39 2.9E-44 352.0 32.8 245 120-511 57-308 (578)
10 KOG0110 RNA-binding protein (R 100.0 2.8E-40 6E-45 346.4 26.4 372 116-674 222-692 (725)
11 KOG0117 Heterogeneous nuclear 100.0 6E-39 1.3E-43 318.6 28.6 249 119-513 81-334 (506)
12 KOG0145 RNA-binding protein EL 100.0 1.8E-38 3.9E-43 293.4 25.7 315 122-510 42-358 (360)
13 KOG0123 Polyadenylate-binding 100.0 8.2E-39 1.8E-43 331.7 23.1 313 1-511 30-350 (369)
14 KOG0145 RNA-binding protein EL 100.0 3.7E-37 8E-42 284.7 22.1 299 213-671 38-354 (360)
15 KOG0117 Heterogeneous nuclear 100.0 1.5E-36 3.2E-41 301.7 27.1 269 179-659 41-318 (506)
16 TIGR01648 hnRNP-R-Q heterogene 100.0 3.4E-36 7.4E-41 325.5 29.0 278 181-673 18-305 (578)
17 KOG0127 Nucleolar protein fibr 100.0 4E-36 8.7E-41 304.7 24.9 319 217-654 6-354 (678)
18 TIGR01622 SF-CC1 splicing fact 100.0 2.7E-34 5.8E-39 315.9 38.0 337 118-509 86-447 (457)
19 TIGR01622 SF-CC1 splicing fact 100.0 1.9E-34 4.2E-39 317.0 32.1 317 213-657 86-433 (457)
20 TIGR01645 half-pint poly-U bin 100.0 2.6E-33 5.7E-38 303.2 32.6 181 214-511 105-285 (612)
21 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.9E-33 6.3E-38 312.1 32.0 277 117-509 171-501 (509)
22 KOG0144 RNA-binding protein CU 100.0 6.6E-34 1.4E-38 281.3 21.6 373 120-511 33-505 (510)
23 TIGR01645 half-pint poly-U bin 100.0 2.7E-32 5.8E-37 295.3 35.2 170 119-297 105-285 (612)
24 KOG0148 Apoptosis-promoting RN 100.0 3.7E-33 8.1E-38 260.3 19.8 233 120-511 5-239 (321)
25 KOG0110 RNA-binding protein (R 100.0 6E-33 1.3E-37 291.4 18.3 370 11-514 246-697 (725)
26 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.8E-31 6.2E-36 296.1 31.3 307 212-672 171-499 (509)
27 KOG0144 RNA-binding protein CU 100.0 2.4E-31 5.1E-36 263.3 22.7 173 213-512 31-208 (510)
28 KOG0148 Apoptosis-promoting RN 100.0 1.4E-29 2.9E-34 236.6 17.6 163 426-659 63-225 (321)
29 TIGR01659 sex-lethal sex-letha 100.0 3E-29 6.5E-34 259.3 21.8 172 212-511 103-276 (346)
30 TIGR01659 sex-lethal sex-letha 100.0 1.9E-28 4.2E-33 253.3 20.4 170 119-297 105-276 (346)
31 KOG1190 Polypyrimidine tract-b 100.0 1.2E-26 2.6E-31 228.4 25.4 417 120-671 27-489 (492)
32 KOG0124 Polypyrimidine tract-b 99.9 5E-26 1.1E-30 220.3 22.6 179 216-511 113-291 (544)
33 KOG4212 RNA-binding protein hn 99.9 8.4E-25 1.8E-29 216.6 24.6 243 119-507 42-291 (608)
34 KOG0147 Transcriptional coacti 99.9 2.3E-26 4.9E-31 236.1 11.3 325 215-670 178-523 (549)
35 KOG0147 Transcriptional coacti 99.9 3.5E-25 7.6E-30 227.4 18.9 330 115-508 173-526 (549)
36 KOG0131 Splicing factor 3b, su 99.9 4.1E-25 9E-30 195.3 12.1 173 212-511 5-178 (203)
37 KOG0124 Polypyrimidine tract-b 99.9 5.5E-24 1.2E-28 206.2 19.8 166 120-294 112-288 (544)
38 KOG1456 Heterogeneous nuclear 99.9 1.3E-21 2.7E-26 190.7 31.8 427 119-660 29-473 (494)
39 KOG0131 Splicing factor 3b, su 99.9 1E-23 2.2E-28 186.5 12.1 168 121-297 9-178 (203)
40 KOG4211 Splicing factor hnRNP- 99.9 6.9E-21 1.5E-25 193.3 27.9 455 120-654 9-492 (510)
41 KOG0146 RNA-binding protein ET 99.9 4.2E-22 9.2E-27 185.7 14.8 299 200-512 3-367 (371)
42 KOG4212 RNA-binding protein hn 99.9 6.2E-21 1.3E-25 189.3 22.4 213 4-293 79-291 (608)
43 KOG1190 Polypyrimidine tract-b 99.9 4.3E-20 9.3E-25 182.4 23.3 272 122-509 151-490 (492)
44 KOG0109 RNA-binding protein LA 99.9 2E-21 4.4E-26 183.9 11.0 148 123-297 4-151 (346)
45 KOG4211 Splicing factor hnRNP- 99.9 3.4E-20 7.5E-25 188.3 20.0 300 214-653 8-340 (510)
46 KOG0109 RNA-binding protein LA 99.8 6.6E-21 1.4E-25 180.4 10.8 149 217-511 3-151 (346)
47 KOG4205 RNA-binding protein mu 99.8 2E-18 4.4E-23 172.9 11.5 176 215-514 5-180 (311)
48 KOG0146 RNA-binding protein ET 99.8 3.8E-18 8.2E-23 159.5 10.8 169 119-297 17-366 (371)
49 KOG4205 RNA-binding protein mu 99.7 4.4E-18 9.6E-23 170.5 10.3 170 120-300 5-180 (311)
50 KOG1456 Heterogeneous nuclear 99.7 7.8E-16 1.7E-20 150.6 25.0 328 10-508 66-487 (494)
51 KOG4206 Spliceosomal protein s 99.7 7E-16 1.5E-20 143.1 19.0 209 214-508 7-220 (221)
52 KOG0120 Splicing factor U2AF, 99.7 1.2E-16 2.7E-21 167.5 14.9 301 213-670 172-486 (500)
53 KOG0120 Splicing factor U2AF, 99.7 1E-16 2.2E-21 168.2 14.1 274 115-508 169-490 (500)
54 KOG4206 Spliceosomal protein s 99.7 2.4E-15 5.2E-20 139.6 16.8 202 424-672 8-219 (221)
55 KOG0105 Alternative splicing f 99.6 2E-15 4.2E-20 134.0 13.3 154 119-291 4-185 (241)
56 PLN03134 glycine-rich RNA-bind 99.6 2.2E-15 4.7E-20 136.5 11.9 83 424-511 33-115 (144)
57 KOG1365 RNA-binding protein Fu 99.6 1.7E-15 3.8E-20 148.6 11.5 288 213-659 57-349 (508)
58 PLN03134 glycine-rich RNA-bind 99.6 5.2E-15 1.1E-19 134.1 12.2 85 213-297 31-115 (144)
59 KOG0105 Alternative splicing f 99.6 2E-14 4.4E-19 127.6 15.5 170 425-659 6-175 (241)
60 KOG1365 RNA-binding protein Fu 99.6 2.1E-14 4.7E-19 141.1 16.5 280 122-511 61-363 (508)
61 KOG1457 RNA binding protein (c 99.6 7.8E-14 1.7E-18 127.7 17.0 84 215-298 33-120 (284)
62 KOG1457 RNA binding protein (c 99.6 9.6E-14 2.1E-18 127.1 16.7 212 425-660 34-274 (284)
63 KOG1548 Transcription elongati 99.5 3.2E-13 7E-18 131.8 17.6 199 214-509 132-351 (382)
64 KOG4307 RNA binding protein RB 99.5 7.2E-13 1.6E-17 139.5 20.0 161 123-296 313-514 (944)
65 KOG0122 Translation initiation 99.5 4.7E-14 1E-18 131.3 9.6 85 212-296 185-269 (270)
66 KOG1548 Transcription elongati 99.5 7.6E-13 1.7E-17 129.2 17.1 193 423-659 132-339 (382)
67 PF00076 RRM_1: RNA recognitio 99.5 2E-13 4.3E-18 108.3 10.0 70 428-503 1-70 (70)
68 KOG0106 Alternative splicing f 99.5 6.5E-14 1.4E-18 131.7 8.1 166 217-506 2-167 (216)
69 KOG0122 Translation initiation 99.5 2.1E-13 4.7E-18 127.0 11.3 82 424-510 188-269 (270)
70 PF00076 RRM_1: RNA recognitio 99.5 2.6E-13 5.6E-18 107.6 9.4 70 219-289 1-70 (70)
71 KOG0121 Nuclear cap-binding pr 99.5 1.9E-13 4.1E-18 114.2 8.2 79 215-293 35-113 (153)
72 KOG0114 Predicted RNA-binding 99.5 5.7E-13 1.2E-17 107.1 10.1 90 422-519 15-104 (124)
73 KOG4307 RNA binding protein RB 99.4 2.3E-11 5.1E-16 128.3 21.7 163 4-205 345-509 (944)
74 PF14259 RRM_6: RNA recognitio 99.4 1.4E-12 3E-17 103.5 9.7 70 428-503 1-70 (70)
75 PF14259 RRM_6: RNA recognitio 99.4 2.6E-12 5.5E-17 101.9 10.0 70 219-289 1-70 (70)
76 KOG0121 Nuclear cap-binding pr 99.4 8E-13 1.7E-17 110.6 7.2 79 425-508 36-114 (153)
77 KOG0125 Ataxin 2-binding prote 99.4 1.2E-12 2.6E-17 126.8 8.3 102 193-296 73-174 (376)
78 KOG0149 Predicted RNA-binding 99.4 9.5E-13 2.1E-17 122.5 7.2 78 426-509 13-90 (247)
79 KOG0106 Alternative splicing f 99.4 1.3E-12 2.7E-17 123.1 7.5 145 123-292 3-167 (216)
80 KOG4660 Protein Mei2, essentia 99.4 2.7E-12 5.9E-17 133.4 10.4 161 114-297 68-251 (549)
81 PLN03120 nucleic acid binding 99.3 4.6E-12 9.9E-17 122.6 10.8 76 425-509 4-79 (260)
82 COG0724 RNA-binding proteins ( 99.3 1E-11 2.2E-16 127.4 14.2 80 216-295 115-194 (306)
83 KOG0125 Ataxin 2-binding prote 99.3 4E-12 8.7E-17 123.3 10.1 79 425-510 96-174 (376)
84 KOG0107 Alternative splicing f 99.3 2.1E-12 4.4E-17 114.5 7.1 78 214-296 8-85 (195)
85 COG0724 RNA-binding proteins ( 99.3 1.9E-11 4.1E-16 125.4 14.2 174 425-659 115-292 (306)
86 PLN03120 nucleic acid binding 99.3 7.2E-12 1.5E-16 121.2 9.9 77 216-296 4-80 (260)
87 KOG0149 Predicted RNA-binding 99.3 3.1E-12 6.7E-17 119.1 6.6 80 215-295 11-90 (247)
88 KOG0126 Predicted RNA-binding 99.3 4.1E-13 8.9E-18 119.3 0.5 80 425-509 35-114 (219)
89 KOG0130 RNA-binding protein RB 99.3 5.4E-12 1.2E-16 106.5 7.0 87 210-296 66-152 (170)
90 KOG0130 RNA-binding protein RB 99.3 5.5E-12 1.2E-16 106.4 6.8 86 421-511 68-153 (170)
91 KOG0113 U1 small nuclear ribon 99.3 1.5E-11 3.3E-16 118.0 10.0 81 423-508 99-179 (335)
92 KOG4207 Predicted splicing fac 99.3 7.1E-12 1.5E-16 113.7 7.1 81 424-509 12-92 (256)
93 KOG0126 Predicted RNA-binding 99.3 7.6E-13 1.7E-17 117.6 0.9 80 215-294 34-113 (219)
94 KOG4207 Predicted splicing fac 99.3 7.9E-12 1.7E-16 113.4 6.7 85 211-295 8-92 (256)
95 PLN03213 repressor of silencin 99.2 2.6E-11 5.6E-16 123.2 10.3 78 424-510 9-88 (759)
96 KOG0113 U1 small nuclear ribon 99.2 2.2E-11 4.8E-16 116.8 8.6 83 213-295 98-180 (335)
97 smart00362 RRM_2 RNA recogniti 99.2 4.9E-11 1.1E-15 94.4 9.5 72 427-505 1-72 (72)
98 KOG0114 Predicted RNA-binding 99.2 5.1E-11 1.1E-15 96.0 9.3 83 212-297 14-96 (124)
99 PLN03121 nucleic acid binding 99.2 4.7E-11 1E-15 113.6 10.8 76 425-509 5-80 (243)
100 PLN03213 repressor of silencin 99.2 2.2E-11 4.7E-16 123.7 8.9 79 214-296 8-88 (759)
101 KOG0111 Cyclophilin-type pepti 99.2 8.7E-12 1.9E-16 114.0 5.3 88 213-300 7-94 (298)
102 KOG0107 Alternative splicing f 99.2 3.7E-11 8E-16 106.6 8.8 77 424-510 9-85 (195)
103 smart00360 RRM RNA recognition 99.2 6.1E-11 1.3E-15 93.6 8.9 71 430-505 1-71 (71)
104 PLN03121 nucleic acid binding 99.2 6.9E-11 1.5E-15 112.4 10.2 76 215-294 4-79 (243)
105 smart00362 RRM_2 RNA recogniti 99.2 7.4E-11 1.6E-15 93.4 9.0 71 218-290 1-71 (72)
106 KOG0128 RNA-binding protein SA 99.2 1.1E-12 2.4E-17 142.1 -3.6 233 121-509 571-814 (881)
107 smart00360 RRM RNA recognition 99.2 1E-10 2.2E-15 92.3 7.9 71 221-291 1-71 (71)
108 KOG0111 Cyclophilin-type pepti 99.2 2.1E-11 4.6E-16 111.5 3.8 82 425-511 10-91 (298)
109 cd00590 RRM RRM (RNA recogniti 99.1 3.3E-10 7.1E-15 90.2 10.2 74 427-506 1-74 (74)
110 KOG0128 RNA-binding protein SA 99.1 9.1E-12 2E-16 135.2 -0.1 199 13-295 616-814 (881)
111 KOG0108 mRNA cleavage and poly 99.1 1.4E-10 3.1E-15 121.9 8.7 85 426-515 19-103 (435)
112 cd00590 RRM RRM (RNA recogniti 99.1 5E-10 1.1E-14 89.1 9.6 74 218-292 1-74 (74)
113 KOG0108 mRNA cleavage and poly 99.1 2.2E-10 4.8E-15 120.5 8.3 81 217-297 19-99 (435)
114 smart00361 RRM_1 RNA recogniti 99.1 4.9E-10 1.1E-14 88.5 8.2 61 439-504 2-69 (70)
115 PF13893 RRM_5: RNA recognitio 99.1 6.6E-10 1.4E-14 83.6 8.2 56 233-293 1-56 (56)
116 PF13893 RRM_5: RNA recognitio 99.1 6E-10 1.3E-14 83.8 7.7 56 442-507 1-56 (56)
117 smart00361 RRM_1 RNA recogniti 99.0 1.2E-09 2.6E-14 86.3 8.0 61 230-290 2-69 (70)
118 KOG0129 Predicted RNA-binding 99.0 8.6E-09 1.9E-13 106.8 16.3 172 211-486 254-432 (520)
119 KOG0415 Predicted peptidyl pro 99.0 6.9E-10 1.5E-14 108.7 7.3 85 422-511 236-320 (479)
120 PF04059 RRM_2: RNA recognitio 99.0 3.6E-09 7.9E-14 87.4 9.4 84 577-673 1-85 (97)
121 KOG0129 Predicted RNA-binding 99.0 1.2E-08 2.6E-13 105.8 15.0 157 117-277 255-432 (520)
122 KOG0415 Predicted peptidyl pro 98.9 2.9E-09 6.3E-14 104.3 6.1 87 212-298 235-321 (479)
123 KOG4454 RNA binding protein (R 98.8 1E-09 2.2E-14 100.8 1.5 139 120-283 8-150 (267)
124 KOG4208 Nucleolar RNA-binding 98.8 1.7E-08 3.6E-13 92.7 8.3 82 424-510 48-130 (214)
125 KOG4208 Nucleolar RNA-binding 98.8 1.9E-08 4.1E-13 92.4 8.3 85 212-296 45-130 (214)
126 KOG4210 Nuclear localization s 98.8 4.9E-09 1.1E-13 105.6 5.0 178 214-511 86-265 (285)
127 KOG0112 Large RNA-binding prot 98.8 4.4E-09 9.5E-14 115.1 4.3 163 117-297 368-532 (975)
128 KOG0226 RNA-binding proteins [ 98.7 1E-08 2.2E-13 96.6 4.8 81 426-511 191-271 (290)
129 KOG0153 Predicted RNA-binding 98.7 4.5E-08 9.8E-13 96.4 8.5 80 421-510 224-303 (377)
130 KOG4210 Nuclear localization s 98.7 1.8E-08 4E-13 101.5 5.6 169 119-297 86-265 (285)
131 KOG4454 RNA binding protein (R 98.7 5.9E-09 1.3E-13 95.9 0.9 79 212-292 5-83 (267)
132 KOG0132 RNA polymerase II C-te 98.6 8E-08 1.7E-12 103.7 7.5 78 423-511 419-496 (894)
133 KOG0226 RNA-binding proteins [ 98.6 3.9E-08 8.4E-13 92.7 4.3 162 122-293 97-267 (290)
134 KOG0132 RNA polymerase II C-te 98.6 9.8E-08 2.1E-12 103.1 7.3 78 215-298 420-497 (894)
135 KOG0153 Predicted RNA-binding 98.6 1.8E-07 3.8E-12 92.4 8.0 78 212-295 224-302 (377)
136 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.9E-07 4.2E-12 97.0 8.4 86 421-511 401-486 (940)
137 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.3E-07 2.8E-12 98.2 6.9 83 214-296 403-485 (940)
138 KOG0112 Large RNA-binding prot 98.5 8.8E-08 1.9E-12 105.2 4.1 162 215-513 371-534 (975)
139 KOG0533 RRM motif-containing p 98.4 7.2E-07 1.6E-11 86.5 8.2 83 426-514 84-166 (243)
140 KOG0533 RRM motif-containing p 98.4 1.3E-06 2.8E-11 84.8 8.5 85 213-298 80-164 (243)
141 PF04059 RRM_2: RNA recognitio 98.4 3.5E-06 7.6E-11 69.8 9.6 79 426-509 2-86 (97)
142 KOG0116 RasGAP SH3 binding pro 98.2 2.6E-06 5.7E-11 89.5 7.8 79 425-509 288-366 (419)
143 KOG0151 Predicted splicing reg 98.2 3.4E-06 7.4E-11 90.4 8.3 83 422-509 171-256 (877)
144 KOG0116 RasGAP SH3 binding pro 98.2 1.8E-06 4E-11 90.6 6.3 79 216-295 288-366 (419)
145 KOG4676 Splicing factor, argin 98.2 1.3E-06 2.7E-11 87.4 4.5 196 217-487 8-209 (479)
146 KOG4209 Splicing factor RNPS1, 98.2 3.4E-06 7.3E-11 82.3 6.4 83 212-295 97-179 (231)
147 PF08777 RRM_3: RNA binding mo 98.1 5E-06 1.1E-10 70.7 5.6 76 425-506 1-76 (105)
148 KOG4209 Splicing factor RNPS1, 98.1 5.4E-06 1.2E-10 80.9 5.8 81 424-510 100-180 (231)
149 KOG4660 Protein Mei2, essentia 98.0 3.5E-06 7.7E-11 88.6 3.9 73 212-289 71-143 (549)
150 KOG4676 Splicing factor, argin 98.0 3.4E-06 7.3E-11 84.4 3.5 150 123-284 9-214 (479)
151 PF11608 Limkain-b1: Limkain b 98.0 3.8E-05 8.3E-10 60.3 7.9 67 123-208 4-75 (90)
152 KOG2193 IGF-II mRNA-binding pr 97.9 7.9E-07 1.7E-11 89.5 -2.5 153 217-509 2-156 (584)
153 KOG2193 IGF-II mRNA-binding pr 97.9 4.1E-06 8.9E-11 84.5 1.0 143 426-659 2-144 (584)
154 KOG0151 Predicted splicing reg 97.9 2.3E-05 4.9E-10 84.4 6.5 85 213-297 171-258 (877)
155 PF11608 Limkain-b1: Limkain b 97.8 5.1E-05 1.1E-09 59.6 6.5 69 426-509 3-76 (90)
156 PF08777 RRM_3: RNA binding mo 97.4 0.00036 7.9E-09 59.4 6.1 70 217-292 2-76 (105)
157 COG5175 MOT2 Transcriptional r 97.3 0.00041 8.9E-09 68.4 6.4 81 425-510 114-203 (480)
158 COG5175 MOT2 Transcriptional r 97.3 0.00049 1.1E-08 67.8 6.4 82 215-296 113-203 (480)
159 KOG1995 Conserved Zn-finger pr 97.2 0.00028 6.2E-09 70.8 3.7 83 424-511 65-155 (351)
160 KOG1995 Conserved Zn-finger pr 97.1 0.0006 1.3E-08 68.6 4.4 85 213-297 63-155 (351)
161 KOG0115 RNA-binding protein p5 96.9 0.0017 3.7E-08 62.2 6.2 81 426-508 32-112 (275)
162 KOG2314 Translation initiation 96.9 0.0028 6E-08 67.1 8.2 79 215-294 57-142 (698)
163 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0019 4.2E-08 47.3 4.8 52 217-275 2-53 (53)
164 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0032 7E-08 52.7 6.4 78 215-294 5-90 (100)
165 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0029 6.3E-08 46.4 5.2 52 122-189 2-53 (53)
166 KOG3152 TBP-binding protein, a 96.8 0.00086 1.9E-08 64.1 2.8 74 215-288 73-158 (278)
167 KOG2314 Translation initiation 96.7 0.0063 1.4E-07 64.5 8.5 76 425-506 58-140 (698)
168 KOG2416 Acinus (induces apopto 96.6 0.0032 6.8E-08 67.1 5.5 88 566-673 433-520 (718)
169 KOG0115 RNA-binding protein p5 96.5 0.0049 1.1E-07 59.2 5.8 101 184-292 6-110 (275)
170 PF08675 RNA_bind: RNA binding 96.4 0.015 3.2E-07 46.1 7.1 59 213-280 6-64 (87)
171 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.018 3.8E-07 48.3 7.7 76 425-507 6-89 (100)
172 KOG1855 Predicted RNA-binding 96.3 0.0047 1E-07 63.4 4.9 67 422-488 228-307 (484)
173 KOG4849 mRNA cleavage factor I 96.3 0.0037 7.9E-08 62.1 3.5 78 215-292 79-158 (498)
174 KOG3152 TBP-binding protein, a 96.1 0.0051 1.1E-07 59.0 3.7 82 119-201 72-157 (278)
175 KOG1996 mRNA splicing factor [ 96.0 0.019 4.2E-07 56.0 7.0 78 426-508 282-365 (378)
176 KOG1996 mRNA splicing factor [ 95.8 0.02 4.4E-07 55.9 6.3 66 230-295 300-366 (378)
177 KOG2416 Acinus (induces apopto 95.7 0.011 2.4E-07 63.1 4.4 80 212-297 440-523 (718)
178 KOG2202 U2 snRNP splicing fact 95.7 0.0049 1.1E-07 59.3 1.5 63 231-294 83-146 (260)
179 KOG2202 U2 snRNP splicing fact 95.5 0.0072 1.6E-07 58.2 1.9 63 440-508 83-146 (260)
180 KOG1855 Predicted RNA-binding 95.5 0.02 4.3E-07 59.0 5.0 71 575-655 229-307 (484)
181 PF08952 DUF1866: Domain of un 95.4 0.086 1.9E-06 47.0 8.1 76 213-297 24-108 (146)
182 PF10309 DUF2414: Protein of u 95.3 0.096 2.1E-06 39.4 7.0 57 578-654 6-62 (62)
183 KOG4849 mRNA cleavage factor I 95.2 0.029 6.2E-07 56.0 5.1 77 426-507 81-159 (498)
184 PF08675 RNA_bind: RNA binding 94.7 0.11 2.4E-06 41.2 6.1 57 577-656 8-64 (87)
185 PF08952 DUF1866: Domain of un 94.6 0.16 3.4E-06 45.3 7.7 56 440-509 51-106 (146)
186 PF10309 DUF2414: Protein of u 94.5 0.22 4.7E-06 37.6 7.0 53 426-487 6-62 (62)
187 PF10567 Nab6_mRNP_bdg: RNA-re 94.3 0.71 1.5E-05 45.7 12.0 207 423-674 13-231 (309)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 94.3 0.092 2E-06 49.3 5.8 82 214-295 5-97 (176)
189 PF15023 DUF4523: Protein of u 93.4 0.34 7.3E-06 42.6 7.2 71 424-507 85-159 (166)
190 KOG2068 MOT2 transcription fac 93.2 0.036 7.8E-07 55.8 1.1 83 426-513 78-166 (327)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 92.6 0.16 3.5E-06 47.7 4.5 81 425-510 7-98 (176)
192 KOG2591 c-Mpl binding protein, 92.3 0.39 8.5E-06 51.4 7.2 94 183-289 148-245 (684)
193 KOG2068 MOT2 transcription fac 92.0 0.081 1.7E-06 53.3 1.7 82 214-296 75-163 (327)
194 KOG4285 Mitotic phosphoprotein 91.7 0.53 1.1E-05 46.6 6.9 73 216-296 197-270 (350)
195 PF07576 BRAP2: BRCA1-associat 90.4 2.5 5.5E-05 36.2 9.1 67 216-284 13-80 (110)
196 KOG2591 c-Mpl binding protein, 90.2 0.96 2.1E-05 48.5 7.6 58 578-655 176-233 (684)
197 PF15023 DUF4523: Protein of u 89.5 1 2.2E-05 39.6 6.0 66 121-203 86-155 (166)
198 PF04847 Calcipressin: Calcipr 89.5 0.71 1.5E-05 43.6 5.6 62 229-296 8-71 (184)
199 PF07576 BRAP2: BRCA1-associat 89.4 2.7 6E-05 36.0 8.5 66 578-659 13-79 (110)
200 PF11767 SET_assoc: Histone ly 88.9 1.6 3.5E-05 33.5 6.0 55 227-290 11-65 (66)
201 PF11767 SET_assoc: Histone ly 88.7 2.1 4.6E-05 32.8 6.6 55 436-504 11-65 (66)
202 KOG2253 U1 snRNP complex, subu 88.5 0.45 9.6E-06 52.2 3.9 72 421-506 36-107 (668)
203 KOG2135 Proteins containing th 88.4 0.33 7E-06 51.0 2.6 74 424-509 371-445 (526)
204 KOG2135 Proteins containing th 88.1 0.29 6.2E-06 51.4 2.0 76 216-298 372-448 (526)
205 KOG4285 Mitotic phosphoprotein 86.5 2.2 4.7E-05 42.5 6.8 65 121-202 197-261 (350)
206 PF07292 NID: Nmi/IFP 35 domai 84.5 1.2 2.6E-05 36.3 3.4 64 175-238 1-74 (88)
207 KOG0804 Cytoplasmic Zn-finger 83.5 3.5 7.7E-05 43.4 7.2 67 577-659 74-140 (493)
208 PF07292 NID: Nmi/IFP 35 domai 82.9 1.3 2.7E-05 36.2 3.0 33 14-46 1-34 (88)
209 PF04847 Calcipressin: Calcipr 81.7 4.1 8.8E-05 38.5 6.4 63 438-509 8-70 (184)
210 KOG0804 Cytoplasmic Zn-finger 80.3 5.7 0.00012 41.9 7.3 68 425-499 74-142 (493)
211 PF03880 DbpA: DbpA RNA bindin 76.7 11 0.00023 29.7 6.5 59 226-293 11-74 (74)
212 KOG4574 RNA-binding protein (c 74.0 2.3 5E-05 48.1 2.6 79 218-302 300-380 (1007)
213 PF03880 DbpA: DbpA RNA bindin 73.5 7.8 0.00017 30.5 4.9 59 435-507 11-74 (74)
214 KOG2318 Uncharacterized conser 72.9 18 0.00038 39.6 8.7 80 422-506 171-304 (650)
215 KOG4574 RNA-binding protein (c 68.8 3.4 7.3E-05 46.9 2.5 74 427-511 300-375 (1007)
216 KOG2253 U1 snRNP complex, subu 67.2 4.4 9.6E-05 44.8 2.9 72 212-292 36-107 (668)
217 PF14111 DUF4283: Domain of un 61.8 11 0.00023 34.3 4.1 79 172-251 55-140 (153)
218 KOG2318 Uncharacterized conser 55.8 50 0.0011 36.3 8.2 81 213-293 171-305 (650)
219 KOG4019 Calcineurin-mediated s 53.1 12 0.00026 34.6 2.7 74 426-510 11-90 (193)
220 KOG2891 Surface glycoprotein [ 51.9 7.5 0.00016 38.1 1.3 81 578-667 150-255 (445)
221 PF14111 DUF4283: Domain of un 49.9 22 0.00047 32.3 4.1 37 258-295 55-91 (153)
222 KOG4410 5-formyltetrahydrofola 49.3 64 0.0014 32.1 7.1 49 120-183 329-378 (396)
223 TIGR02542 B_forsyth_147 Bacter 48.7 29 0.00063 29.4 4.0 44 225-268 83-129 (145)
224 PF10567 Nab6_mRNP_bdg: RNA-re 45.8 33 0.00072 34.4 4.7 84 211-294 10-106 (309)
225 KOG4019 Calcineurin-mediated s 44.8 23 0.0005 32.9 3.2 75 217-297 11-91 (193)
226 PF07530 PRE_C2HC: Associated 44.3 41 0.00089 26.0 4.1 63 440-510 2-65 (68)
227 KOG4483 Uncharacterized conser 39.0 91 0.002 32.6 6.7 60 421-486 387-446 (528)
228 PF03468 XS: XS domain; Inter 38.9 66 0.0014 27.9 5.0 59 578-654 9-76 (116)
229 smart00596 PRE_C2HC PRE_C2HC d 38.2 52 0.0011 25.4 3.7 63 440-510 2-65 (69)
230 KOG2891 Surface glycoprotein [ 36.5 43 0.00093 33.0 3.8 35 426-460 150-196 (445)
231 PF03468 XS: XS domain; Inter 36.3 45 0.00097 28.9 3.6 51 426-479 9-68 (116)
232 PF02714 DUF221: Domain of unk 31.2 73 0.0016 33.1 5.0 32 470-508 1-32 (325)
233 PF15513 DUF4651: Domain of un 30.7 93 0.002 23.5 3.9 18 440-457 9-26 (62)
234 PRK14548 50S ribosomal protein 28.3 1.3E+02 0.0027 24.5 4.7 56 219-277 23-80 (84)
235 KOG4410 5-formyltetrahydrofola 27.9 49 0.0011 32.9 2.6 49 216-269 330-378 (396)
236 PRK14548 50S ribosomal protein 26.0 2.8E+02 0.006 22.5 6.2 57 428-487 23-81 (84)
237 PF02714 DUF221: Domain of unk 25.9 1E+02 0.0022 32.0 4.9 31 14-46 1-31 (325)
238 KOG2295 C2H2 Zn-finger protein 24.4 13 0.00028 40.4 -2.1 72 215-286 230-301 (648)
239 KOG1295 Nonsense-mediated deca 23.3 96 0.0021 32.5 3.9 69 215-283 6-77 (376)
240 PF15513 DUF4651: Domain of un 22.2 1.5E+02 0.0033 22.4 3.7 20 231-250 9-28 (62)
241 KOG4483 Uncharacterized conser 21.3 1.5E+02 0.0032 31.2 4.7 55 216-277 391-446 (528)
No 1
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-60 Score=480.82 Aligned_cols=493 Identities=38% Similarity=0.548 Sum_probs=373.5
Q ss_pred CcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 005812 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (676)
Q Consensus 121 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~ 200 (676)
+.||||++||++++.++|.++|+.+|+|..+.+..++. .+.++|||||.|.-.++++.|++..++..|.|+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~g---------s~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr 75 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKG---------SSEKRGFGFVTFAMEEDVQRALAETEQSKFEGR 75 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCC---------cccccCccceeeehHhHHHHHHHHhhcCcccce
Confidence 36999999999999999999999999999999887653 257899999999999999999999999999999
Q ss_pred EEEEecCCCC------------------------CC--CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCC
Q 005812 201 TVWARQLGGE------------------------GS--KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT 254 (676)
Q Consensus 201 ~i~v~~~~~~------------------------~~--~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~ 254 (676)
.|.+...... .. ..+.+.|+|+|||+.+...+|+.+|+.||.|..|.||+.. .
T Consensus 76 ~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-d 154 (678)
T KOG0127|consen 76 ILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-D 154 (678)
T ss_pred ecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-C
Confidence 9987432100 01 1237899999999999999999999999999999999876 4
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCC--CCCCCCCCCC-Ccccc
Q 005812 255 GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNS--DSGSDDDLGD-DDAET 331 (676)
Q Consensus 255 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~ 331 (676)
|+-+|||||+|....+|..||+.+|+..|.||+|.|+||.+++.|.......+..-...... +...++++.. .+...
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed 234 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEED 234 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhc
Confidence 55559999999999999999999999999999999999999998887554321110000000 0000000000 00000
Q ss_pred cCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCC
Q 005812 332 ASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSK 411 (676)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (676)
.+.++++++..++ ++.... .+........+.+..+ .++.. .+....
T Consensus 235 ~e~d~edeEe~D~----~se~~e---------------------------e~~~~Eee~~~vDd~e-~S~~~--~~~k~~ 280 (678)
T KOG0127|consen 235 GEEDSEDEEETDG----NSEAFE---------------------------EGEESEEEEDDVDDEE-SSGKK--ESDKKA 280 (678)
T ss_pred ccccccccccccc----cchhhh---------------------------cccccccccccccccc-ccccC--cccchh
Confidence 0001111110010 000000 0000000000000000 00000 000000
Q ss_pred CCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCC
Q 005812 412 PKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTS 491 (676)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~ 491 (676)
..+. ...+...+.+|||+||||++|+++|.++|++||.|.++.|+.++.++.++|.|||.|.+..+|+.||.......
T Consensus 281 q~k~--~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~ 358 (678)
T KOG0127|consen 281 QNKT--TRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPAS 358 (678)
T ss_pred cccc--ccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccC
Confidence 0000 12355667999999999999999999999999999999999999999999999999999999999999986555
Q ss_pred CCC-eeecCcEEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCC
Q 005812 492 GLG-IFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQS 570 (676)
Q Consensus 492 ~~g-~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (676)
+.| +.|+||.|.|..|..+.++..+++++......+++||||..+|.|..++|++.++|..||..|....+.+.+++.+
T Consensus 359 e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lkn 438 (678)
T KOG0127|consen 359 EDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKN 438 (678)
T ss_pred CCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcC
Confidence 445 9999999999999999999999888877888899999999999999999999999999999999999999999999
Q ss_pred CCccccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHH
Q 005812 571 PNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVA 650 (676)
Q Consensus 571 p~~~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~A 650 (676)
||+++|.|+|.|+|||..++...|..|..++|++.+.+.-..+..+..+.... .+.+.||+||.|..+++|.+|
T Consensus 439 pnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~------k~~s~g~aF~~f~EhEhalka 512 (678)
T KOG0127|consen 439 PNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEK------KNYSEGYAFVGFTEHEHALKA 512 (678)
T ss_pred CceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhh------hcccccccccCccHHHHHHHh
Confidence 99999999999999999999999999999999998775333333333322211 357899999999999999999
Q ss_pred HHHHcCCCCCCCcccCcccccc
Q 005812 651 LRVLNNNPSKLFYHHCFDAADA 672 (676)
Q Consensus 651 i~~lng~~~~~~~~~~~~~~~~ 672 (676)
++.+ |+.+|++|.-+
T Consensus 513 lk~~-------G~lkq~~Vefe 527 (678)
T KOG0127|consen 513 LKVL-------GVLKQAKVEFE 527 (678)
T ss_pred hhcc-------cccccceEEEE
Confidence 9987 77888888654
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.8e-50 Score=450.67 Aligned_cols=357 Identities=21% Similarity=0.272 Sum_probs=297.2
Q ss_pred EEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 005812 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (676)
Q Consensus 123 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i 202 (676)
+|||+|||.++++++|+++|+.||.|.+|+++.++. .++++|||||+|.+.++|++|+..+|+..+.|+.|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~---------t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i 72 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV---------TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI 72 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence 699999999999999999999999999999998764 37899999999999999999999999999999999
Q ss_pred EEecCCCC--CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 005812 203 WARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (676)
Q Consensus 203 ~v~~~~~~--~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 280 (676)
++...... .......+|||+|||.++++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.|||
T Consensus 73 ~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 73 RIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred EeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 98654321 223345689999999999999999999999999999999874 788999999999999999999999999
Q ss_pred ceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHH
Q 005812 281 QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKV 360 (676)
Q Consensus 281 ~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (676)
..+.|+.|.|....++.....
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~~----------------------------------------------------------- 172 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHEREA----------------------------------------------------------- 172 (562)
T ss_pred cEecCceEEEecccccccccc-----------------------------------------------------------
Confidence 999999999987644321000
Q ss_pred hhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHH
Q 005812 361 LNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNE 440 (676)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee 440 (676)
......++|||+|||+++|++
T Consensus 173 -----------------------------------------------------------~~~~~~~~l~V~nl~~~~tee 193 (562)
T TIGR01628 173 -----------------------------------------------------------APLKKFTNLYVKNLDPSVNED 193 (562)
T ss_pred -----------------------------------------------------------ccccCCCeEEEeCCCCcCCHH
Confidence 000113689999999999999
Q ss_pred HHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec----CcEEEEEEccCchhhhhH
Q 005812 441 EVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK----GRQLTVLKALDKKLAHDK 516 (676)
Q Consensus 441 dl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~----gr~l~v~~a~~k~~~~~~ 516 (676)
+|+++|+.||.|.++.++.+. ++.++|||||+|.+.++|.+|++.|+ +..|. |+.|.|.++..+......
T Consensus 194 ~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~-----g~~i~~~~~g~~l~v~~a~~k~er~~~ 267 (562)
T TIGR01628 194 KLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMN-----GKKIGLAKEGKKLYVGRAQKRAEREAE 267 (562)
T ss_pred HHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC-----CcEecccccceeeEeecccChhhhHHH
Confidence 999999999999999988874 68899999999999999999999999 99999 999999998876543211
Q ss_pred hhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecCCcccCHHHHHH
Q 005812 517 EIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKK 596 (676)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nlp~~~te~~l~~ 596 (676)
...+.. ....... .....++|||+|||..+|+++|++
T Consensus 268 ~~~~~~---------------------------------------~~~~~~~----~~~~~~~l~V~nl~~~~~~~~L~~ 304 (562)
T TIGR01628 268 LRRKFE---------------------------------------ELQQERK----MKAQGVNLYVKNLDDTVTDEKLRE 304 (562)
T ss_pred HHhhHH---------------------------------------hhhhhhh----cccCCCEEEEeCCCCccCHHHHHH
Confidence 111000 0000000 011336799999999999999999
Q ss_pred HHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCCCCcccCccccccccc
Q 005812 597 LCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSKLFYHHCFDAADAQCK 675 (676)
Q Consensus 597 ~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~~~~~~~~~~~~~~~~ 675 (676)
+|+ .||.|.+|+++.+. + +.++|+|||+|.+.++|.+|+..|||.. ...+.+.|.+|+.|
T Consensus 305 ~F~---------~~G~i~~~~i~~d~-~------g~~~g~gfV~f~~~~~A~~A~~~~~g~~---~~gk~l~V~~a~~k 364 (562)
T TIGR01628 305 LFS---------ECGEITSAKVMLDE-K------GVSRGFGFVCFSNPEEANRAVTEMHGRM---LGGKPLYVALAQRK 364 (562)
T ss_pred HHH---------hcCCeEEEEEEECC-C------CCcCCeEEEEeCCHHHHHHHHHHhcCCe---eCCceeEEEeccCc
Confidence 999 59999999999983 3 5899999999999999999999999942 23477888888765
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.7e-47 Score=429.92 Aligned_cols=328 Identities=22% Similarity=0.340 Sum_probs=274.6
Q ss_pred CcccCCCCcccceEEEEecCHHHHHHHHHHhCCceecCeEEEEeeccccchHHHhhhhhchhhhhhhhhhccCCCCCccc
Q 005812 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (676)
Q Consensus 1 ~v~~~~tg~s~G~afV~F~~~edA~~Al~~~~g~~i~gr~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (676)
|++|+.|++++|||||+|.+.+||++||+.+|+..|.|++|+|.|+......
T Consensus 32 v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~---------------------------- 83 (562)
T TIGR01628 32 VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSL---------------------------- 83 (562)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccc----------------------------
Confidence 4688999999999999999999999999999999999999999998322100
Q ss_pred ccccccchhhccCCCCCCCcccccCcccCCCCccchhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhh
Q 005812 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (676)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~ 160 (676)
......+|||+|||.++++++|+++|+.||.|.+|+++.+
T Consensus 84 ------------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~---- 123 (562)
T TIGR01628 84 ------------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD---- 123 (562)
T ss_pred ------------------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec----
Confidence 0012346999999999999999999999999999998865
Q ss_pred hhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEecCCCC-----CCCCCCcEEEEcCCCCCCCHHHHHH
Q 005812 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE-----GSKTQKWKLIIRNIPFKAKVNEIKD 235 (676)
Q Consensus 161 ~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~~~~~~-----~~~~~~~~v~V~nLp~~~~e~~l~~ 235 (676)
..|+++|||||+|.+.++|.+|+..+||..+.|+.+.+...... ......++|||+|||.++++++|++
T Consensus 124 ------~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~ 197 (562)
T TIGR01628 124 ------ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRE 197 (562)
T ss_pred ------CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHH
Confidence 34889999999999999999999999999999999988543221 1234457899999999999999999
Q ss_pred hhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC----CeeEEEEEecCCCCCCcCCcccCccCC
Q 005812 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG----KRPIAVDWAVPKNIYSSGGAAAGVQNK 311 (676)
Q Consensus 236 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~----g~~i~v~~a~~~~~~~~~~~~~~~~~~ 311 (676)
+|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|+|..+. |+.+.|.++..+.....
T Consensus 198 ~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~---------- 266 (562)
T TIGR01628 198 LFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREA---------- 266 (562)
T ss_pred HHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHH----------
Confidence 99999999999999885 7889999999999999999999999999999 99999988755431100
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCch
Q 005812 312 GDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDK 391 (676)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (676)
..........
T Consensus 267 --------------------------------------------~~~~~~~~~~-------------------------- 276 (562)
T TIGR01628 267 --------------------------------------------ELRRKFEELQ-------------------------- 276 (562)
T ss_pred --------------------------------------------HHHhhHHhhh--------------------------
Confidence 0000000000
Q ss_pred hhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEE
Q 005812 392 TVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGF 471 (676)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~af 471 (676)
........+.+|||+|||..+++++|+++|+.||.|.+|+++.+ .++.++||||
T Consensus 277 -------------------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gf 330 (562)
T TIGR01628 277 -------------------------QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGF 330 (562)
T ss_pred -------------------------hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEE
Confidence 00001123478999999999999999999999999999999998 6799999999
Q ss_pred EEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhh
Q 005812 472 LKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAH 514 (676)
Q Consensus 472 V~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~ 514 (676)
|+|.+.++|.+|+..|| |..|+|++|.|.+|..+....
T Consensus 331 V~f~~~~~A~~A~~~~~-----g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 331 VCFSNPEEANRAVTEMH-----GRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred EEeCCHHHHHHHHHHhc-----CCeeCCceeEEEeccCcHHHH
Confidence 99999999999999999 999999999999999887543
No 4
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.7e-46 Score=407.37 Aligned_cols=433 Identities=17% Similarity=0.208 Sum_probs=277.4
Q ss_pred CcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHh--CCCeec
Q 005812 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL--HQKEIK 198 (676)
Q Consensus 121 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l--~~~~~~ 198 (676)
+++|||+|||+++++++|+++|+.||.|.+|.++. +++||||+|.+.++|.+|+..+ ++..+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---------------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~ 66 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---------------GKRQALVEFEDEESAKACVNFATSVPIYIR 66 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---------------CCCEEEEEeCchHHHHHHHHHhhcCCceEc
Confidence 57899999999999999999999999999999763 3579999999999999999974 789999
Q ss_pred CeEEEEecCCCCC------------CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEec
Q 005812 199 GGTVWARQLGGEG------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266 (676)
Q Consensus 199 ~~~i~v~~~~~~~------------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 266 (676)
|+.|+|....... .......|||+||++.+++++|+++|+.||.|.+|.|+++. .+++|||+|.
T Consensus 67 g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~ 142 (481)
T TIGR01649 67 GQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFE 142 (481)
T ss_pred CeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEEC
Confidence 9999986432111 11122479999999999999999999999999999998753 3478999999
Q ss_pred CHHHHHHHHHHhCCceeCC--eeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCC
Q 005812 267 CKRDAESAIQKFNGQKFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDL 344 (676)
Q Consensus 267 ~~~~A~~A~~~l~~~~~~g--~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (676)
+.++|.+|++.|||..|.| +.|+|+|+++..+......... .+.+ ..+..+..+.. ..
T Consensus 143 ~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s------~dyt--------~~~l~~~~~~~-~~----- 202 (481)
T TIGR01649 143 SVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDS------RDYT--------NPDLPGRRDPG-LD----- 202 (481)
T ss_pred CHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCC------CCCc--------CCCCCCCCCCC-cC-----
Confidence 9999999999999999954 6899999987665432211000 0000 00000000000 00
Q ss_pred CCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCC---C-----chhhccccccccccccCCCCCCC-CCC
Q 005812 345 PSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQD---S-----DKTVNESAKVSDVSKLNSSKSKP-KSL 415 (676)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~ 415 (676)
..+.. .... ..+..+. .....|+.... . ..............+.......+ ...
T Consensus 203 ---~~~~~-------~~~~---~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (481)
T TIGR01649 203 ---QTHRQ-------RQPA---LLGQHPS----SYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAIS 265 (481)
T ss_pred ---ccccc-------cccc---cccCCCc----cCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCcccc
Confidence 00000 0000 0000000 00000000000 0 00000000000000000000000 000
Q ss_pred CcccCCCCCCCeEEEcCCCC-CCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 005812 416 KQTEGEDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 494 (676)
Q Consensus 416 ~~~~~~~~~~~~l~V~nLp~-~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g 494 (676)
........++++|||+|||+ .+|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|..|+..|| |
T Consensus 266 ~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~ln-----g 335 (481)
T TIGR01649 266 SYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLN-----G 335 (481)
T ss_pred ccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC-----C
Confidence 00111245678999999998 69999999999999999999998763 6999999999999999999999 9
Q ss_pred eeecCcEEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCcc
Q 005812 495 IFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFH 574 (676)
Q Consensus 495 ~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 574 (676)
..|.|++|.|.++......... ++....+.+...+.+.....+. . ........+..
T Consensus 336 ~~l~g~~l~v~~s~~~~~~~~~-------------------~~~~~~~~~~~~d~~~~~~~r~---~--~~~~~~~~~~~ 391 (481)
T TIGR01649 336 VKLFGKPLRVCPSKQQNVQPPR-------------------EGQLDDGLTSYKDYSSSRNHRF---K--KPGSANKNNIQ 391 (481)
T ss_pred CEECCceEEEEEcccccccCCC-------------------CCcCcCCCcccccccCCccccC---C--CcccccccccC
Confidence 9999999999997654211100 0000000000000000000000 0 00000000112
Q ss_pred ccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCC--ceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHH
Q 005812 575 VSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPV--IKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALR 652 (676)
Q Consensus 575 ~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~--V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~ 652 (676)
.+..+|||.|||..+|+++|+++|+ .||. |..|++.... +..+|+|||+|.+.++|.+||.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~---------~~G~~~i~~ik~~~~~--------~~~~~~gfVeF~~~e~A~~Al~ 454 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFA---------ENGVHKVKKFKFFPKD--------NERSKMGLLEWESVEDAVEALI 454 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHH---------hcCCccceEEEEecCC--------CCcceeEEEEcCCHHHHHHHHH
Confidence 2457899999999999999999999 4897 8888886432 1357999999999999999999
Q ss_pred HHcCCCCC
Q 005812 653 VLNNNPSK 660 (676)
Q Consensus 653 ~lng~~~~ 660 (676)
.|||+++-
T Consensus 455 ~ln~~~l~ 462 (481)
T TIGR01649 455 ALNHHQLN 462 (481)
T ss_pred HhcCCccC
Confidence 99998664
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.3e-43 Score=371.56 Aligned_cols=343 Identities=22% Similarity=0.277 Sum_probs=237.0
Q ss_pred cEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeE
Q 005812 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (676)
Q Consensus 122 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~ 201 (676)
.+|||+|||.++++++|+++|+.||+|.+|+|+.++. +|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~---------~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~ 74 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV---------TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT 74 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC---------CCccceEEEEEECcHHHHHHHHhhcccEEECCee
Confidence 5799999999999999999999999999999998874 4899999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc
Q 005812 202 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281 (676)
Q Consensus 202 i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 281 (676)
|.|............++|||+|||..+++++|+.+|+.||.|..+.++.+..++.++|||||+|.+.++|+.|++.|||.
T Consensus 75 i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 75 IKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred EEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 99976554444556789999999999999999999999999999999998888889999999999999999999999999
Q ss_pred eeCC--eeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHH
Q 005812 282 KFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARK 359 (676)
Q Consensus 282 ~~~g--~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (676)
.+.| ..|.|.|+.............................-.... .+........... .+....+ .......
T Consensus 155 ~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 229 (352)
T TIGR01661 155 TPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTA--AGIGPMHHAAARF-RPSAGDF--TAVLAHQ 229 (352)
T ss_pred ccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccc--cCCCCccCccccc-ccCcchh--hhhhhhh
Confidence 9876 678888886543211110000000000000000000000000 0000000000000 0000000 0000000
Q ss_pred HhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCC-CCCCC-cccCCCCCCCeEEEcCCCCCC
Q 005812 360 VLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSK-PKSLK-QTEGEDELQNTIFICNLPFDL 437 (676)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~V~nLp~~~ 437 (676)
.... ..+.... .....+....... ..... ........+.+|||+|||+++
T Consensus 230 ~~~~------~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~ 281 (352)
T TIGR01661 230 QQQH------AVAQQHA----------------------AQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDT 281 (352)
T ss_pred hhhc------ccccccc----------------------cccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCC
Confidence 0000 0000000 0000000000000 00000 001123446789999999999
Q ss_pred CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 438 teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
++++|+++|++||.|.+|+|+.|..++.++|||||+|.+.++|.+|+..|| |..|+||.|.|.|+.+|.
T Consensus 282 ~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln-----G~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 282 DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN-----GYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEEccCCC
Confidence 999999999999999999999999899999999999999999999999999 999999999999988764
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.6e-42 Score=365.76 Aligned_cols=316 Identities=22% Similarity=0.322 Sum_probs=232.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
+..+|||+|||..+++++|+++|+.||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35799999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (352)
T TIGR01661 82 PSSD---------------------------------------------------------------------------- 85 (352)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 5421
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
...+++|||+|||..+++++|+++|+.||.|..
T Consensus 86 -----------------------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~ 118 (352)
T TIGR01661 86 -----------------------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIIT 118 (352)
T ss_pred -----------------------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEE
Confidence 001368999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC--cEEEEEEccCchhhhhHhhhh--hcccccccCc
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLAHDKEIDK--SKNETNDHRN 530 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g--r~l~v~~a~~k~~~~~~~~~~--~~~~~~~~~~ 530 (676)
+.++.+..++.++|||||+|.+.++|.+|++.|| |..+.| ++|.|.++..+.......... ..........
T Consensus 119 ~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~-----g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (352)
T TIGR01661 119 SRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN-----GTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTR 193 (352)
T ss_pred EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCC
Confidence 9999988888999999999999999999999999 888877 578899887654222111110 0000000000
Q ss_pred cccc---ccCcccCCCCCCCCCCh--hHHHHHHHHHHHHh------------------------hcCCCCCccccCCeEE
Q 005812 531 LYLA---KEGLILEGTPAAEGVSD--DDMSKRQMLHEKKM------------------------TKLQSPNFHVSRTRLV 581 (676)
Q Consensus 531 ~~~~---~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------------------------~~~~~p~~~~~~~~l~ 581 (676)
..+. ..+...+.........+ .............. .....+.....+.+||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf 273 (352)
T TIGR01661 194 VPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIF 273 (352)
T ss_pred CCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEE
Confidence 0000 00000000000001110 00000000000000 0000011111234699
Q ss_pred EecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCCC
Q 005812 582 IYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSKL 661 (676)
Q Consensus 582 V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~~ 661 (676)
|+|||+.+++++|+++|+ +||.|.+|+|++|+.++ .++|||||+|.+.++|.+||..|||..+
T Consensus 274 V~NL~~~~~e~~L~~~F~---------~fG~v~~v~i~~d~~t~------~skG~aFV~F~~~~~A~~Ai~~lnG~~~-- 336 (352)
T TIGR01661 274 VYNLSPDTDETVLWQLFG---------PFGAVQNVKIIRDLTTN------QCKGYGFVSMTNYDEAAMAILSLNGYTL-- 336 (352)
T ss_pred EeCCCCCCCHHHHHHHHH---------hCCCeEEEEEeEcCCCC------CccceEEEEECCHHHHHHHHHHhCCCEE--
Confidence 999999999999999999 69999999999998765 8999999999999999999999999643
Q ss_pred CcccCcccccccccC
Q 005812 662 FYHHCFDAADAQCKT 676 (676)
Q Consensus 662 ~~~~~~~~~~~~~~~ 676 (676)
..+++.|+++-.|+
T Consensus 337 -~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 337 -GNRVLQVSFKTNKA 350 (352)
T ss_pred -CCeEEEEEEccCCC
Confidence 34788888877663
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.9e-39 Score=355.35 Aligned_cols=337 Identities=19% Similarity=0.211 Sum_probs=244.1
Q ss_pred cccceEEEEecCHHHHHHHHHH--hCCceecCeEEEEeeccccchHHHhhhhhchhhhhhhhhhccCCCCCccccccccc
Q 005812 9 EHRGFGYVQFAVMEDANRAVEM--KNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHS 86 (676)
Q Consensus 9 ~s~G~afV~F~~~edA~~Al~~--~~g~~i~gr~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (676)
++||||||+|.+.++|++|++. +++..|.|++|+|.++.++... +. . +
T Consensus 36 ~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~--~~-~--~------------------------- 85 (481)
T TIGR01649 36 PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK--RD-G--N------------------------- 85 (481)
T ss_pred CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc--cC-C--C-------------------------
Confidence 3679999999999999999997 4789999999999999544100 00 0 0
Q ss_pred chhhccCCCCCCCcccccCcccCCCCccchhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccc
Q 005812 87 SKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLA 166 (676)
Q Consensus 87 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~ 166 (676)
.+ .+.. ......+|||+||++++++++|+++|+.||.|.+|.++.++
T Consensus 86 -------------------~~-~~~~----~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~--------- 132 (481)
T TIGR01649 86 -------------------SD-FDSA----GPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN--------- 132 (481)
T ss_pred -------------------Cc-ccCC----CCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---------
Confidence 00 0000 00123479999999999999999999999999999976432
Q ss_pred cCCCccceEEEEeCCHHHHHHHHHHhCCCeecCe--EEEEecCC----------------------C-------------
Q 005812 167 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGG--TVWARQLG----------------------G------------- 209 (676)
Q Consensus 167 ~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~--~i~v~~~~----------------------~------------- 209 (676)
..++|||+|.+.++|.+|+..|||..|.+. .|.+.... +
T Consensus 133 ----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~ 208 (481)
T TIGR01649 133 ----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQR 208 (481)
T ss_pred ----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCcccccc
Confidence 246899999999999999999999999754 33321000 0
Q ss_pred -C-----------------------------------------------------------CCCCCCcEEEEcCCCC-CC
Q 005812 210 -E-----------------------------------------------------------GSKTQKWKLIIRNIPF-KA 228 (676)
Q Consensus 210 -~-----------------------------------------------------------~~~~~~~~v~V~nLp~-~~ 228 (676)
. ......++|||+|||+ .+
T Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~v 288 (481)
T TIGR01649 209 QPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKV 288 (481)
T ss_pred ccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCC
Confidence 0 0012457999999998 69
Q ss_pred CHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCc
Q 005812 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGV 308 (676)
Q Consensus 229 ~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~ 308 (676)
++++|+++|+.||.|.+|+|+++ .+|||||+|.+.++|..|+..|||..|.|+.|+|.++...........
T Consensus 289 t~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~---- 359 (481)
T TIGR01649 289 NCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREG---- 359 (481)
T ss_pred CHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCC----
Confidence 99999999999999999999986 469999999999999999999999999999999999865432111000
Q ss_pred cCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCC
Q 005812 309 QNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQD 388 (676)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (676)
. .. + . ......+..
T Consensus 360 -----~-~~------~---~---------------~~~~~d~~~------------------------------------ 373 (481)
T TIGR01649 360 -----Q-LD------D---G---------------LTSYKDYSS------------------------------------ 373 (481)
T ss_pred -----c-Cc------C---C---------------CcccccccC------------------------------------
Confidence 0 00 0 0 000000000
Q ss_pred CchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCc--eeEEEEeecCCCCCc
Q 005812 389 SDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE--VVSFVPVLHQVTKRP 466 (676)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~--v~~v~i~~~~~~~~~ 466 (676)
....+... +..........++.+|||+|||+.+++++|+++|+.||. |..++++... ++ .
T Consensus 374 ---------------~~~~r~~~-~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~ 435 (481)
T TIGR01649 374 ---------------SRNHRFKK-PGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-R 435 (481)
T ss_pred ---------------CccccCCC-cccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-c
Confidence 00000000 000000012235689999999999999999999999998 8888776543 23 5
Q ss_pred ceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE------EEEEEccCc
Q 005812 467 KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ------LTVLKALDK 510 (676)
Q Consensus 467 ~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~------l~v~~a~~k 510 (676)
+++|||+|.+.++|.+|+..|| +..|.|+. |+|.++.++
T Consensus 436 ~~~gfVeF~~~e~A~~Al~~ln-----~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 436 SKMGLLEWESVEDAVEALIALN-----HHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ceeEEEEcCCHHHHHHHHHHhc-----CCccCCCCCCccceEEEEeccCC
Confidence 8999999999999999999999 99999985 999998764
No 8
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-40 Score=339.05 Aligned_cols=345 Identities=22% Similarity=0.277 Sum_probs=283.6
Q ss_pred EEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 005812 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (676)
Q Consensus 123 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i 202 (676)
.|||| +++|+..|+++|+.+|+|.++++..| . + +.|||||.|.++++|.+|+.++|...+.|+.|
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d----------~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ 67 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD----------A-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPI 67 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeec----------C-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence 48999 99999999999999999999998865 3 4 89999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 005812 203 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (676)
Q Consensus 203 ~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 282 (676)
++........ .|||+||+++++...|.++|+.||.|.+|++.++. .| ++|| ||+|.++++|++|+..+||..
T Consensus 68 rim~s~rd~~-----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 68 RIMWSQRDPS-----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred EeehhccCCc-----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 9976543222 39999999999999999999999999999999986 44 9999 999999999999999999999
Q ss_pred eCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhh
Q 005812 283 FGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLN 362 (676)
Q Consensus 283 ~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (676)
+.|+.|.|....++.........
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~--------------------------------------------------------- 162 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE--------------------------------------------------------- 162 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc---------------------------------------------------------
Confidence 99999999988665432211110
Q ss_pred cccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHH
Q 005812 363 KLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEV 442 (676)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl 442 (676)
....-..++++|++.+++++.|
T Consensus 163 ----------------------------------------------------------~~~~~t~v~vk~~~~~~~~~~l 184 (369)
T KOG0123|consen 163 ----------------------------------------------------------YKKRFTNVYVKNLEEDSTDEEL 184 (369)
T ss_pred ----------------------------------------------------------hhhhhhhhheeccccccchHHH
Confidence 0001257999999999999999
Q ss_pred HHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhhhhc
Q 005812 443 KQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSK 522 (676)
Q Consensus 443 ~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~ 522 (676)
.++|+.+|.|.++.++.+. .+.++||+||.|.++++|..|+..|+ +..++|..+.|..+..+.+....-.++
T Consensus 185 ~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~-----~~~~~~~~~~V~~aqkk~e~~~~l~~~-- 256 (369)
T KOG0123|consen 185 KDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLN-----GKIFGDKELYVGRAQKKSEREAELKRK-- 256 (369)
T ss_pred HHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhcc-----CCcCCccceeecccccchhhHHHHhhh--
Confidence 9999999999999988885 56699999999999999999999999 999999999999988743322111111
Q ss_pred ccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecCCcccCHHHHHHHHHHHH
Q 005812 523 NETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAV 602 (676)
Q Consensus 523 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nlp~~~te~~l~~~F~~~~ 602 (676)
..+....+........|||+|++..++.+.|+..|+
T Consensus 257 -----------------------------------------~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~--- 292 (369)
T KOG0123|consen 257 -----------------------------------------FEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFS--- 292 (369)
T ss_pred -----------------------------------------hHhhhhhccccccccccccccCccccchhHHHHHHh---
Confidence 000011111122346799999999999999999999
Q ss_pred HhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCCCCcccCccccccc
Q 005812 603 VSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSKLFYHHCFDAADAQ 673 (676)
Q Consensus 603 ~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~~~~~~~~~~~~~~ 673 (676)
.||.|.+++|+.++. ++++|+|||+|.+.++|.+|+..+||. ++-+ +.+.|+.+|
T Consensus 293 ------~~GeI~s~kv~~~~~-------g~skG~gfV~fs~~eeA~~A~~~~n~~-~i~~--k~l~vav~q 347 (369)
T KOG0123|consen 293 ------SFGEITSAKVMVDEN-------GKSKGFGFVEFSSPEEAKKAMTEMNGR-LIGG--KPLYVAVAQ 347 (369)
T ss_pred ------cccceeeEEEEeccC-------CCccceEEEEcCCHHHHHHHHHhhChh-hhcC--CchhhhHHh
Confidence 599999999998854 689999999999999999999999994 4323 344444443
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.3e-39 Score=351.98 Aligned_cols=245 Identities=24% Similarity=0.331 Sum_probs=208.1
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec-
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK- 198 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~- 198 (676)
.+++|||+|||+++++++|+++|++||.|.+++|++|. +|+++|||||+|.+.++|.+|++.||+..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~----------sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~ 126 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF----------SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP 126 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC----------CCCccceEEEEeCCHHHHHHHHHHcCCCeecC
Confidence 45789999999999999999999999999999999772 4899999999999999999999999999886
Q ss_pred CeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEEEEE-cccCCCCCceeEEEEEecCHHHHHHHHH
Q 005812 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYI-PHNTDTGLSKGFAFVKFTCKRDAESAIQ 276 (676)
Q Consensus 199 ~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~ 276 (676)
|+.+.+.. ....++|||+|||.++++++|.++|++++. +.++.+ ......++++|||||+|.+.++|..|++
T Consensus 127 Gr~l~V~~------S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 127 GRLLGVCI------SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred Cccccccc------cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 67776653 235789999999999999999999999864 444444 3333456789999999999999999999
Q ss_pred HhCC--ceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHH
Q 005812 277 KFNG--QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEV 354 (676)
Q Consensus 277 ~l~~--~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (676)
.|+. ..+.|+.|.|.|+.+......
T Consensus 201 kL~~gki~l~Gr~I~VdwA~p~~~~d~----------------------------------------------------- 227 (578)
T TIGR01648 201 KLMPGRIQLWGHVIAVDWAEPEEEVDE----------------------------------------------------- 227 (578)
T ss_pred HhhccceEecCceEEEEeecccccccc-----------------------------------------------------
Confidence 8864 357899999999976431000
Q ss_pred HHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCC
Q 005812 355 DIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP 434 (676)
Q Consensus 355 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp 434 (676)
......++|||+|||
T Consensus 228 -----------------------------------------------------------------~~~~~~k~LfVgNL~ 242 (578)
T TIGR01648 228 -----------------------------------------------------------------DVMAKVKILYVRNLM 242 (578)
T ss_pred -----------------------------------------------------------------cccccccEEEEeCCC
Confidence 000113689999999
Q ss_pred CCCCHHHHHHHHHhC--CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 435 FDLDNEEVKQRFSAF--GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 435 ~~~teedl~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
+.+++++|+++|+.| |.|..|.++ ++||||+|.+.++|.+|++.|| +..|+|+.|.|.|+.++.
T Consensus 243 ~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ln-----G~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELN-----GKELEGSEIEVTLAKPVD 308 (578)
T ss_pred CCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEEEEccCCC
Confidence 999999999999999 999998764 4699999999999999999999 999999999999998764
No 10
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=2.8e-40 Score=346.41 Aligned_cols=372 Identities=22% Similarity=0.321 Sum_probs=265.9
Q ss_pred hhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCC
Q 005812 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 195 (676)
Q Consensus 116 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~ 195 (676)
.+.....+|||.|||+..+++||+.+| |||.|..+++|.+|...++|+
T Consensus 222 e~i~etgrlf~RNLpyt~~eed~~~lf--------------------------------a~v~~~~~~~avka~~~~D~k 269 (725)
T KOG0110|consen 222 EDISETGRLFVRNLPYTSTEEDLLKLF--------------------------------AFVTFMFPEHAVKAYSELDGK 269 (725)
T ss_pred hHHHhhhhhhhccCCccccHHHHHHhh--------------------------------HHHhhhhhHHHHhhhhhcccc
Confidence 445566789999999999999999988 477788888888888888888
Q ss_pred eecCeEEEEecCCC-----------------------------------------------------------------C
Q 005812 196 EIKGGTVWARQLGG-----------------------------------------------------------------E 210 (676)
Q Consensus 196 ~~~~~~i~v~~~~~-----------------------------------------------------------------~ 210 (676)
.+.|+.+.+.+... .
T Consensus 270 ~fqgrmlhvlp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gs 349 (725)
T KOG0110|consen 270 VFQGRMLHVLPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGS 349 (725)
T ss_pred ccccceeeecCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcch
Confidence 88888776531000 0
Q ss_pred ------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeE
Q 005812 211 ------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGF 260 (676)
Q Consensus 211 ------------------------------~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~ 260 (676)
......+.|+|+|||..+..++|..+|..||.|..+.++. .| --
T Consensus 350 avr~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G---~~ 423 (725)
T KOG0110|consen 350 AVRLALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GG---TG 423 (725)
T ss_pred HHHHHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecCc---cc---ce
Confidence 0122357899999999999999999999999999996663 22 23
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCcc
Q 005812 261 AFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSE 340 (676)
Q Consensus 261 afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (676)
|+|.|.++.+|+.|++.|.+..+...++.+.|+ |...+................ .....+.-..
T Consensus 424 aiv~fl~p~eAr~Afrklaysr~k~~plyle~a-P~dvf~~~pka~~~~~e~~~~---------------~ee~~~Er~s 487 (725)
T KOG0110|consen 424 AIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA-PEDVFTEDPKADDLSAESRSK---------------MEENPSERVS 487 (725)
T ss_pred eeeeecCccchHHHHHHhchhhhccCccccccC-hhhhccCCccccccccccccc---------------cccCcceecc
Confidence 999999999999999999999999999999998 544433111000000000000 0000000000
Q ss_pred ccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccC
Q 005812 341 KEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEG 420 (676)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (676)
.. .+.+....+.. + .+......
T Consensus 488 ~~-------------------------d~~v~eD~d~t------------------e---------------~ss~a~~a 509 (725)
T KOG0110|consen 488 AE-------------------------DGQVEEDKDPT------------------E---------------ESSLARVA 509 (725)
T ss_pred cc-------------------------cccccccCCcc------------------c---------------cccchhhh
Confidence 00 00000000000 0 00000000
Q ss_pred CCC-CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCCCCCCee
Q 005812 421 EDE-LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT---KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (676)
Q Consensus 421 ~~~-~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~ 496 (676)
... ..+.|||+||+++++.++|..+|...|.|.++.|.+.+.. -.+.|||||+|.++++|++|++.|+ |+.
T Consensus 510 ~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq-----gtv 584 (725)
T KOG0110|consen 510 EDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ-----GTV 584 (725)
T ss_pred hccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc-----Cce
Confidence 111 1133999999999999999999999999999988766432 2367999999999999999999999 999
Q ss_pred ecCcEEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCcccc
Q 005812 497 LKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVS 576 (676)
Q Consensus 497 l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 576 (676)
|+||.|.|.++..+.....- + +..+.+ .
T Consensus 585 ldGH~l~lk~S~~k~~~~~g---K---------------------------------------------~~~~kk----~ 612 (725)
T KOG0110|consen 585 LDGHKLELKISENKPASTVG---K---------------------------------------------KKSKKK----K 612 (725)
T ss_pred ecCceEEEEeccCccccccc---c---------------------------------------------cccccc----c
Confidence 99999999998744322110 0 000011 2
Q ss_pred CCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcC
Q 005812 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (676)
Q Consensus 577 ~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng 656 (676)
.+.|+|+||||.++..+++.+|. .||.|.+|+|+... +.+-++|||||+|.++.+|.+|+.+|.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~---------aFGqlksvRlPKK~------~k~a~rGF~Fv~f~t~~ea~nA~~al~- 676 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFT---------AFGQLKSVRLPKKI------GKGAHRGFGFVDFLTPREAKNAFDALG- 676 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHh---------cccceeeeccchhh------cchhhccceeeeccCcHHHHHHHHhhc-
Confidence 37899999999999999999999 69999999999763 345779999999999999999999999
Q ss_pred CCCCCCcccCcccccccc
Q 005812 657 NPSKLFYHHCFDAADAQC 674 (676)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~ 674 (676)
..++|| ||+++.+|..
T Consensus 677 STHlyG--RrLVLEwA~~ 692 (725)
T KOG0110|consen 677 STHLYG--RRLVLEWAKS 692 (725)
T ss_pred ccceec--hhhheehhcc
Confidence 689999 8888888754
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6e-39 Score=318.63 Aligned_cols=249 Identities=25% Similarity=0.324 Sum_probs=218.2
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
..++.|||+.||.++.|++|..+|++.|+|.+++||+|+. +|.++|||||.|.+.++|++|++.||+..|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~---------sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir 151 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF---------SGDNRGYAFVTFCTKEEAQEAIKELNNYEIR 151 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc---------CCCCcceEEEEeecHHHHHHHHHHhhCcccc
Confidence 5688999999999999999999999999999999999974 5999999999999999999999999999885
Q ss_pred -CeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEcccCC-CCCceeEEEEEecCHHHHHHHH
Q 005812 199 -GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTD-TGLSKGFAFVKFTCKRDAESAI 275 (676)
Q Consensus 199 -~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~ 275 (676)
|+.|.|. ....+++|||+|||.++++++|.+.|++.++ |.+|.+...+. ..+++|||||+|.+...|..|.
T Consensus 152 ~GK~igvc------~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 152 PGKLLGVC------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred CCCEeEEE------EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHH
Confidence 8888886 5567899999999999999999999999876 77777776654 3579999999999999999999
Q ss_pred HHhCCc--eeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhH
Q 005812 276 QKFNGQ--KFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEE 353 (676)
Q Consensus 276 ~~l~~~--~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (676)
++|-.. .++|+.+.|+|+.|......
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~e~de---------------------------------------------------- 253 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEEEPDE---------------------------------------------------- 253 (506)
T ss_pred hhccCCceeecCCcceeeccCcccCCCh----------------------------------------------------
Confidence 987654 46899999999988642100
Q ss_pred HHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCC
Q 005812 354 VDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNL 433 (676)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL 433 (676)
+ .++. -+.|||+||
T Consensus 254 -d------------------------------------------~ms~-----------------------VKvLYVRNL 267 (506)
T KOG0117|consen 254 -D------------------------------------------TMSK-----------------------VKVLYVRNL 267 (506)
T ss_pred -h------------------------------------------hhhh-----------------------eeeeeeecc
Confidence 0 0011 268999999
Q ss_pred CCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhh
Q 005812 434 PFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513 (676)
Q Consensus 434 p~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~ 513 (676)
+.++|+|.|+++|+.||.|..|+.++| ||||.|.+.++|.+||+.+| |..|+|..|.|.+|++....
T Consensus 268 ~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~n-----gkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 268 MESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETN-----GKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred chhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhc-----CceecCceEEEEecCChhhh
Confidence 999999999999999999999987644 99999999999999999999 99999999999999986543
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=293.37 Aligned_cols=315 Identities=23% Similarity=0.292 Sum_probs=239.7
Q ss_pred cEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeE
Q 005812 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (676)
Q Consensus 122 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~ 201 (676)
..|+|--||-.+|++||+.+|...|+|++|++++||-+ |.+.||+||.|.++++|++|+..|||-.+..+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKit---------GqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKIT---------GQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeecccc---------ccccccceeeecChHHHHHHHhhhcceeeccce
Confidence 35788888999999999999999999999999999854 999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc
Q 005812 202 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281 (676)
Q Consensus 202 i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 281 (676)
|.|....+.........|||.+||..+|..+|..+|++||.|..-+|..|..+|.++|.|||.|...++|+.|++.|||.
T Consensus 113 IKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 113 IKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred EEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 99988777778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCC--eeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHH
Q 005812 282 KFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARK 359 (676)
Q Consensus 282 ~~~g--~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (676)
.-.| .+|.|.|+...........-. ..-+...+ ...+..+. . ..+-
T Consensus 193 ~P~g~tepItVKFannPsq~t~~a~ls----~ly~sp~r------------------------r~~Gp~hh--~--~~r~ 240 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNPSQKTNQALLS----QLYQSPAR------------------------RYGGPMHH--Q--AQRF 240 (360)
T ss_pred CCCCCCCCeEEEecCCcccccchhhhH----HhhcCccc------------------------cCCCcccc--h--hhhh
Confidence 8755 589999985442111000000 00000000 00000000 0 0000
Q ss_pred HhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCH
Q 005812 360 VLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDN 439 (676)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te 439 (676)
.+.+... +.....+..++..... ..+.++ --.+....+.+|||.||.++++|
T Consensus 241 r~~~~~~-----~~~~~~rfsP~~~d~m---------~~l~~~--------------~lp~~~~~g~ciFvYNLspd~de 292 (360)
T KOG0145|consen 241 RLDNLLN-----PHAAQARFSPMTIDGM---------SGLAGV--------------NLPGGPGGGWCIFVYNLSPDADE 292 (360)
T ss_pred ccccccc-----hhhhhccCCCcccccc---------ceeeee--------------ccCCCCCCeeEEEEEecCCCchH
Confidence 0000000 0000111111111000 000000 01123344799999999999999
Q ss_pred HHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCc
Q 005812 440 EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (676)
Q Consensus 440 edl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k 510 (676)
.-|+++|.+||.|..|+|++|..+++.+|||||.+.+.++|..|+..|| |..+++|.|.|.+...+
T Consensus 293 ~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN-----Gy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 293 SILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN-----GYRLGDRVLQVSFKTNK 358 (360)
T ss_pred hHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc-----CccccceEEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999 99999999999996543
No 13
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-39 Score=331.70 Aligned_cols=313 Identities=23% Similarity=0.368 Sum_probs=262.7
Q ss_pred CcccCCCCcccceEEEEecCHHHHHHHHHHhCCceecCeEEEEeeccccchHHHhhhhhchhhhhhhhhhccCCCCCccc
Q 005812 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (676)
Q Consensus 1 ~v~~~~tg~s~G~afV~F~~~edA~~Al~~~~g~~i~gr~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (676)
|++|- | |.|||||.|.+++||++||+.+|...|.|++|+|+|+...
T Consensus 30 vc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd------------------------------- 75 (369)
T KOG0123|consen 30 VCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD------------------------------- 75 (369)
T ss_pred EeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC-------------------------------
Confidence 35666 5 9999999999999999999999999999999999999322
Q ss_pred ccccccchhhccCCCCCCCcccccCcccCCCCccchhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhh
Q 005812 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (676)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~ 160 (676)
...|||.||+++++..+|+++|+.||.|.+|++..+..
T Consensus 76 ----------------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-- 113 (369)
T KOG0123|consen 76 ----------------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-- 113 (369)
T ss_pred ----------------------------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC--
Confidence 01289999999999999999999999999999997643
Q ss_pred hhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEecCCCC--------CCCCCCcEEEEcCCCCCCCHHH
Q 005812 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE--------GSKTQKWKLIIRNIPFKAKVNE 232 (676)
Q Consensus 161 ~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~~~~~~--------~~~~~~~~v~V~nLp~~~~e~~ 232 (676)
| ++|| ||+|.+++.|.+|+..+||..+.|+.|++-..... ........++|.|++.+.+++.
T Consensus 114 --------g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~ 183 (369)
T KOG0123|consen 114 --------G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEE 183 (369)
T ss_pred --------C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHH
Confidence 5 8999 99999999999999999999999999998433211 1334567899999999999999
Q ss_pred HHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCC
Q 005812 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKG 312 (676)
Q Consensus 233 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~ 312 (676)
|..+|..||.|.++.++.+. .++++||+||.|.+.++|..|+..|++..+.+..+.|..+..+......
T Consensus 184 l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~---------- 252 (369)
T KOG0123|consen 184 LKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAE---------- 252 (369)
T ss_pred HHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHH----------
Confidence 99999999999999999986 5669999999999999999999999999999999999877542211100
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchh
Q 005812 313 DGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKT 392 (676)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (676)
+.......
T Consensus 253 --------------------------------------------l~~~~~~~---------------------------- 260 (369)
T KOG0123|consen 253 --------------------------------------------LKRKFEQE---------------------------- 260 (369)
T ss_pred --------------------------------------------HhhhhHhh----------------------------
Confidence 00000000
Q ss_pred hccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEE
Q 005812 393 VNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472 (676)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV 472 (676)
...........+|||+||+..++.+.|+++|+.||.|.+++|+.+. .++++||+||
T Consensus 261 -----------------------~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV 316 (369)
T KOG0123|consen 261 -----------------------FAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFV 316 (369)
T ss_pred -----------------------hhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEE
Confidence 0000012234689999999999999999999999999999998884 6899999999
Q ss_pred EeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 473 KFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 473 ~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
+|.+.++|.+|+..+| +..+++++|.|.+++.++
T Consensus 317 ~fs~~eeA~~A~~~~n-----~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 317 EFSSPEEAKKAMTEMN-----GRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred EcCCHHHHHHHHHhhC-----hhhhcCCchhhhHHhhhc
Confidence 9999999999999999 999999999999988544
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.7e-37 Score=284.67 Aligned_cols=299 Identities=22% Similarity=0.336 Sum_probs=234.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....+.|+|.-||..+|+++|+.+|...|.|++|++++|+.+|.+-||+||.|.+++||++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCC
Q 005812 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (676)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 372 (676)
+.|...
T Consensus 118 ARPSs~-------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 118 ARPSSD-------------------------------------------------------------------------- 123 (360)
T ss_pred ccCChh--------------------------------------------------------------------------
Confidence 987531
Q ss_pred CCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCce
Q 005812 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v 452 (676)
...+.+|||.+||..+|..||.++|++||.|
T Consensus 124 -------------------------------------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrI 154 (360)
T KOG0145|consen 124 -------------------------------------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRI 154 (360)
T ss_pred -------------------------------------------------hhcccceEEecCCccchHHHHHHHHHHhhhh
Confidence 1123689999999999999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc--EEEEEEccCchhhhhHhhhhhcccccccCc
Q 005812 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR--QLTVLKALDKKLAHDKEIDKSKNETNDHRN 530 (676)
Q Consensus 453 ~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr--~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~ 530 (676)
..-+|+.|..+|.++|.|||.|+...+|..|++.|| |..--|. +|.|.+|........+... ..
T Consensus 155 ItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN-----G~~P~g~tepItVKFannPsq~t~~a~l---------s~ 220 (360)
T KOG0145|consen 155 ITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN-----GQKPSGCTEPITVKFANNPSQKTNQALL---------SQ 220 (360)
T ss_pred hhhhhhhhcccceecceeEEEecchhHHHHHHHhcc-----CCCCCCCCCCeEEEecCCcccccchhhh---------HH
Confidence 999999999999999999999999999999999999 7666664 8999999876433322111 11
Q ss_pred ccccccCcccC----------------CCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecCCcccCHHHH
Q 005812 531 LYLAKEGLILE----------------GTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGL 594 (676)
Q Consensus 531 ~~~~~~g~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nlp~~~te~~l 594 (676)
+|.+....+.. ........++.....-. ......-|.......||||.||..+++|.-|
T Consensus 221 ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~-----~l~~~~lp~~~~~g~ciFvYNLspd~de~~L 295 (360)
T KOG0145|consen 221 LYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMS-----GLAGVNLPGGPGGGWCIFVYNLSPDADESIL 295 (360)
T ss_pred hhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccc-----eeeeeccCCCCCCeeEEEEEecCCCchHhHH
Confidence 12111111000 00000011110000000 0001111333335689999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCCCCcccCccccc
Q 005812 595 KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSKLFYHHCFDAAD 671 (676)
Q Consensus 595 ~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~~~~~~~~~~~~ 671 (676)
-++|. +||.|..|++++|..+ +.++|||||.+.+.++|.-||..|||+.+ ..+.++|+.
T Consensus 296 WQlFg---------pFGAv~nVKvirD~tt------nkCKGfgFVtMtNYdEAamAi~sLNGy~l---g~rvLQVsF 354 (360)
T KOG0145|consen 296 WQLFG---------PFGAVTNVKVIRDFTT------NKCKGFGFVTMTNYDEAAMAIASLNGYRL---GDRVLQVSF 354 (360)
T ss_pred HHHhC---------cccceeeEEEEecCCc------ccccceeEEEecchHHHHHHHHHhcCccc---cceEEEEEE
Confidence 99999 7999999999999876 48999999999999999999999999854 245566653
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=301.66 Aligned_cols=269 Identities=23% Similarity=0.310 Sum_probs=221.9
Q ss_pred eCCHHHHHHHHHHhCCCeecCeEEEEecCCC------CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccC
Q 005812 179 YTTVKSACASVALLHQKEIKGGTVWARQLGG------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (676)
Q Consensus 179 F~~~~~A~~A~~~l~~~~~~~~~i~v~~~~~------~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~ 252 (676)
..+.++|.+||..-.+..+.-..- -+...+ .......+.|||+.||.++.|++|.-+|++.|.|.+++|++++
T Consensus 41 ~~~~eaal~al~E~tgy~l~ve~g-qrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~ 119 (506)
T KOG0117|consen 41 VQSEEAALKALLERTGYTLVVENG-QRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDP 119 (506)
T ss_pred cccHHHHHHHHHHhcCceEEEecc-ccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecc
Confidence 445788888887655543321000 011111 1233567999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCcee-CCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccc
Q 005812 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAET 331 (676)
Q Consensus 253 ~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~-~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (676)
.+|.++|||||.|++.++|+.|++.||+..| .|+.|.|+.+..
T Consensus 120 ~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva------------------------------------ 163 (506)
T KOG0117|consen 120 FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA------------------------------------ 163 (506)
T ss_pred cCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee------------------------------------
Confidence 9999999999999999999999999999998 589999998743
Q ss_pred cCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCC
Q 005812 332 ASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSK 411 (676)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (676)
T Consensus 164 -------------------------------------------------------------------------------- 163 (506)
T KOG0117|consen 164 -------------------------------------------------------------------------------- 163 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCc-eeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHcCC
Q 005812 412 PKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVLHQ-VTKRPKGTGFLKFKTVEAATAAVSASKT 489 (676)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~-v~~v~i~~~~-~~~~~~g~afV~F~t~~~A~~Al~~l~~ 489 (676)
+++|||+|||..+++++|.+.|++.+. |+.|.+.... +..+.+|||||+|.++..|..|.++|-.
T Consensus 164 -------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 164 -------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred -------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 379999999999999999999999873 7777665543 3567899999999999999999999873
Q ss_pred CCCCCeeecCcEEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCC
Q 005812 490 TSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ 569 (676)
Q Consensus 490 ~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (676)
+.+.+.|+.+.|+||.+..+.......
T Consensus 231 ---g~~klwgn~~tVdWAep~~e~ded~ms-------------------------------------------------- 257 (506)
T KOG0117|consen 231 ---GKIKLWGNAITVDWAEPEEEPDEDTMS-------------------------------------------------- 257 (506)
T ss_pred ---CceeecCCcceeeccCcccCCChhhhh--------------------------------------------------
Confidence 379999999999999886533211000
Q ss_pred CCCccccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHH
Q 005812 570 SPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALV 649 (676)
Q Consensus 570 ~p~~~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~ 649 (676)
.-..||||||+.++|++.|+++|. .||.|.+|+.++| ||||+|.+.++|++
T Consensus 258 ------~VKvLYVRNL~~~tTeE~lk~~F~---------~~G~veRVkk~rD--------------YaFVHf~eR~davk 308 (506)
T KOG0117|consen 258 ------KVKVLYVRNLMESTTEETLKKLFN---------EFGKVERVKKPRD--------------YAFVHFAEREDAVK 308 (506)
T ss_pred ------heeeeeeeccchhhhHHHHHHHHH---------hccceEEeecccc--------------eeEEeecchHHHHH
Confidence 114699999999999999999999 5999999999866 99999999999999
Q ss_pred HHHHHcCCCC
Q 005812 650 ALRVLNNNPS 659 (676)
Q Consensus 650 Ai~~lng~~~ 659 (676)
||+.+||+-+
T Consensus 309 Am~~~ngkel 318 (506)
T KOG0117|consen 309 AMKETNGKEL 318 (506)
T ss_pred HHHHhcCcee
Confidence 9999999655
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3.4e-36 Score=325.52 Aligned_cols=278 Identities=21% Similarity=0.260 Sum_probs=219.8
Q ss_pred CHHHHHHHHHHhCCCeecCeEEEEecCCC-----CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCC
Q 005812 181 TVKSACASVALLHQKEIKGGTVWARQLGG-----EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG 255 (676)
Q Consensus 181 ~~~~A~~A~~~l~~~~~~~~~i~v~~~~~-----~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~ 255 (676)
..+.|.+|+..++|..+.........-.+ .......++|||+|||.+++|++|+++|+.||.|.+|+|+++ .+|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC
Confidence 46889999998888776544332211111 112345689999999999999999999999999999999999 789
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCC
Q 005812 256 LSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASD 334 (676)
Q Consensus 256 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (676)
+++|||||+|.+.++|++||+.||+..+. |+.|.|.++..
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~--------------------------------------- 137 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD--------------------------------------- 137 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc---------------------------------------
Confidence 99999999999999999999999999885 67777765421
Q ss_pred CCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCC
Q 005812 335 DSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKS 414 (676)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (676)
T Consensus 138 -------------------------------------------------------------------------------- 137 (578)
T TIGR01648 138 -------------------------------------------------------------------------------- 137 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCc-eeEEEEee-cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCC
Q 005812 415 LKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVL-HQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (676)
Q Consensus 415 ~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~-v~~v~i~~-~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~ 492 (676)
.++|||+|||..+++++|.++|++++. +..+.++. ....++++|||||+|.++++|..|+..|+..
T Consensus 138 ----------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g-- 205 (578)
T TIGR01648 138 ----------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG-- 205 (578)
T ss_pred ----------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc--
Confidence 268999999999999999999999863 44443332 2335678999999999999999999988621
Q ss_pred CCeeecCcEEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCC
Q 005812 493 LGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPN 572 (676)
Q Consensus 493 ~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 572 (676)
.+.+.|+.|.|.|+.+...... .
T Consensus 206 -ki~l~Gr~I~VdwA~p~~~~d~--------------------------------------------------------~ 228 (578)
T TIGR01648 206 -RIQLWGHVIAVDWAEPEEEVDE--------------------------------------------------------D 228 (578)
T ss_pred -ceEecCceEEEEeecccccccc--------------------------------------------------------c
Confidence 4678999999999876432110 0
Q ss_pred ccccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccC--CCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHH
Q 005812 573 FHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQK--PVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVA 650 (676)
Q Consensus 573 ~~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~--G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~A 650 (676)
......+|||+|||.++|+++|+++|+ .| |.|.+|+++ ++||||+|.++++|.+|
T Consensus 229 ~~~~~k~LfVgNL~~~~tee~L~~~F~---------~f~~G~I~rV~~~--------------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 229 VMAKVKILYVRNLMTTTTEEIIEKSFS---------EFKPGKVERVKKI--------------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred ccccccEEEEeCCCCCCCHHHHHHHHH---------hcCCCceEEEEee--------------cCeEEEEeCCHHHHHHH
Confidence 000225899999999999999999999 48 999999776 56999999999999999
Q ss_pred HHHHcCCCCCCCcccCccccccc
Q 005812 651 LRVLNNNPSKLFYHHCFDAADAQ 673 (676)
Q Consensus 651 i~~lng~~~~~~~~~~~~~~~~~ 673 (676)
|+.|||.. +.+ +++.|+.|.
T Consensus 286 i~~lnG~~-i~G--r~I~V~~Ak 305 (578)
T TIGR01648 286 MDELNGKE-LEG--SEIEVTLAK 305 (578)
T ss_pred HHHhCCCE-ECC--EEEEEEEcc
Confidence 99999963 323 566666553
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4e-36 Score=304.66 Aligned_cols=319 Identities=24% Similarity=0.316 Sum_probs=224.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
.+|||++||+.++.++|.++|+.+|+|..+.++.++.++.++|||||.|.-.+++++|+..+++..|.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999988899999999999999999999999999999999999999776
Q ss_pred CCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCC
Q 005812 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 376 (676)
......... .+ + .+....
T Consensus 86 ~r~e~~~~~---e~-----------------------------~-------------------~veK~~----------- 103 (678)
T KOG0127|consen 86 ARSEEVEKG---EN-----------------------------K-------------------AVEKPI----------- 103 (678)
T ss_pred ccchhcccc---cc-----------------------------h-------------------hhhccc-----------
Confidence 432100000 00 0 000000
Q ss_pred ccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCccc-CCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEE
Q 005812 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTE-GEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v 455 (676)
...++.. ....+...|.|+||||.+.+.+|+.+|+.||.|..|
T Consensus 104 ------------------------------------~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei 147 (678)
T KOG0127|consen 104 ------------------------------------EQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEI 147 (678)
T ss_pred ------------------------------------ccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEE
Confidence 0000000 011224789999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHh------hhhhcc-c----
Q 005812 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKE------IDKSKN-E---- 524 (676)
Q Consensus 456 ~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~------~~~~~~-~---- 524 (676)
.|++.. .|..+|||||.|....+|..|+..+| +..|+||+|-|.||.+++...... .++... +
T Consensus 148 ~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N-----~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e 221 (678)
T KOG0127|consen 148 VIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFN-----GNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKE 221 (678)
T ss_pred EcccCC-CCCccceEEEEEeeHHHHHHHHHhcc-----CceecCceeEEeeecccccccccchhhhhhhhhccchhhhcc
Confidence 888664 56667999999999999999999999 999999999999999998655421 111110 0
Q ss_pred -ccccCcccccccCcccCCCCCCCCC----------------ChhHHHHHHHHHHHHhhcCCC-CCccccCCeEEEecCC
Q 005812 525 -TNDHRNLYLAKEGLILEGTPAAEGV----------------SDDDMSKRQMLHEKKMTKLQS-PNFHVSRTRLVIYNLP 586 (676)
Q Consensus 525 -~~~~~~~~~~~~g~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~l~V~nlp 586 (676)
..+..+-....+|.......-..++ +..+.+.+......+...... +....-..+|||||||
T Consensus 222 ~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~ 301 (678)
T KOG0127|consen 222 ADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLP 301 (678)
T ss_pred cccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCC
Confidence 0011111111111100000000000 000000000000000000000 1111123689999999
Q ss_pred cccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHH
Q 005812 587 KSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVL 654 (676)
Q Consensus 587 ~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~l 654 (676)
|++|+++|.+.|+ +||.|..+.|+.++.|+ +|+|.|||.|.++.+|..||...
T Consensus 302 fD~tEEel~~~fs---------kFG~v~ya~iV~~k~T~------~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 302 FDTTEEELKEHFS---------KFGEVKYAIIVKDKDTG------HSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccccHHHHHHHHH---------hhccceeEEEEeccCCC------CcccceEEEeccHHHHHHHHHhc
Confidence 9999999999999 69999999999999886 99999999999999999999988
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.7e-34 Score=315.90 Aligned_cols=337 Identities=21% Similarity=0.305 Sum_probs=226.2
Q ss_pred cccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 005812 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (676)
Q Consensus 118 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (676)
.+..++|||+|||..+++++|+++|+.||.|..|.++.++. .|+++|||||+|.+.++|.+|+. |+|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~---------~~~skg~afVeF~~~e~A~~Al~-l~g~~~ 155 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN---------SRRSKGVAYVEFYDVESVIKALA-LTGQML 155 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---------CCCcceEEEEEECCHHHHHHHHH-hCCCEE
Confidence 35678999999999999999999999999999999998764 48899999999999999999997 999999
Q ss_pred cCeEEEEecCCCC------------CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEe
Q 005812 198 KGGTVWARQLGGE------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265 (676)
Q Consensus 198 ~~~~i~v~~~~~~------------~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f 265 (676)
.|+.|.+...... ......++|||+|||..+++++|+++|+.||.|..|.++.+..+|.++|||||+|
T Consensus 156 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f 235 (457)
T TIGR01622 156 LGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQF 235 (457)
T ss_pred CCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEE
Confidence 9999988643211 1112358999999999999999999999999999999999988889999999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCC
Q 005812 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLP 345 (676)
Q Consensus 266 ~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (676)
.+.++|..|+..|+|..|.|+.|.|.|+........... .......... ..
T Consensus 236 ~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~---~~~~~~~~~~--------------------------~~ 286 (457)
T TIGR01622 236 HDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAAN---TFEDIDKQQQ--------------------------MG 286 (457)
T ss_pred CCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchh---hhcccccccc--------------------------CC
Confidence 999999999999999999999999999863221111000 0000000000 00
Q ss_pred CCCCchhHHHHHHHHhhccccc-CCCCCCCCCccccccCCCCCCCchhhccccccccccccCC--CCCCCCCCCcccCCC
Q 005812 346 SNADFDEEVDIARKVLNKLTST-TGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNS--SKSKPKSLKQTEGED 422 (676)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 422 (676)
.... ......+...+...... .+.+++............ .......... ..+... .........+.....
T Consensus 287 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 359 (457)
T TIGR01622 287 KNLN-TEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQ-----RDGIIDPNIP-SRYATGALAIMARNSFVPSTNNN 359 (457)
T ss_pred cCCC-ccchHHHHHhhccCCCCccccCCCccchhhhhcccc-----cccccccccc-ccccccccccccCCCCCCcccCC
Confidence 0000 00000111111110000 000110000000000000 0000000000 000000 000000111111133
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCC
Q 005812 423 ELQNTIFICNLPFDLD----------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~t----------eedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~ 492 (676)
.++.+|+|.||....+ .+||++.|++||.|..|.|.. ..+.|++||+|.+.++|.+|++.||
T Consensus 360 ~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~ln---- 431 (457)
T TIGR01622 360 LATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVDAALAAFQALN---- 431 (457)
T ss_pred CCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHHHHHHHHHHhc----
Confidence 5678999999955443 378999999999999997753 3457999999999999999999999
Q ss_pred CCeeecCcEEEEEEccC
Q 005812 493 LGIFLKGRQLTVLKALD 509 (676)
Q Consensus 493 ~g~~l~gr~l~v~~a~~ 509 (676)
|..|+||.|.+.+...
T Consensus 432 -Gr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 432 -GRYFGGKMITAAFVVN 447 (457)
T ss_pred -CcccCCeEEEEEEEcH
Confidence 9999999999999754
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.9e-34 Score=317.03 Aligned_cols=317 Identities=24% Similarity=0.347 Sum_probs=215.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|.+||. |+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456799999999999999999999999999999999999999999999999999999999998 899999999999987
Q ss_pred ecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCC
Q 005812 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (676)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 372 (676)
+........... . .
T Consensus 165 ~~~~~~~~~~~~------------~------------------------------------------------~------ 178 (457)
T TIGR01622 165 SQAEKNRAAKAA------------T------------------------------------------------H------ 178 (457)
T ss_pred cchhhhhhhhcc------------c------------------------------------------------c------
Confidence 643211000000 0 0
Q ss_pred CCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCce
Q 005812 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v 452 (676)
. .......++|||+|||+.+++++|+++|+.||.|
T Consensus 179 --------------------------~-------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i 213 (457)
T TIGR01622 179 --------------------------Q-------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDI 213 (457)
T ss_pred --------------------------c-------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe
Confidence 0 0000114799999999999999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhhhhcccc--cccCc
Q 005812 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNET--NDHRN 530 (676)
Q Consensus 453 ~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~--~~~~~ 530 (676)
..|.++.+..+|.++|||||+|.+.++|.+|+..|| |..|.|++|.|.|+.................. ....+
T Consensus 214 ~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~-----g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (457)
T TIGR01622 214 EDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMN-----GFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKN 288 (457)
T ss_pred EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcC-----CcEECCEEEEEEEccCCCccccchhhhccccccccCCcC
Confidence 999999998888999999999999999999999999 99999999999997743211111000000000 00000
Q ss_pred cc----------cccc----CcccCCCCC-C---CCCChhHHHH---------HHHHHHHHhhcCCCCCccccCCeEEEe
Q 005812 531 LY----------LAKE----GLILEGTPA-A---EGVSDDDMSK---------RQMLHEKKMTKLQSPNFHVSRTRLVIY 583 (676)
Q Consensus 531 ~~----------~~~~----g~~~~~~~~-~---~~~~~~~~~~---------~~~~~~~~~~~~~~p~~~~~~~~l~V~ 583 (676)
+. +... +...++... . ..+....... ...........++..+...+..+|+|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 368 (457)
T TIGR01622 289 LNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLS 368 (457)
T ss_pred CCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEe
Confidence 00 0000 000000000 0 0000000000 000000000111111133456789999
Q ss_pred cCCc--ccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCC
Q 005812 584 NLPK--SMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 657 (676)
Q Consensus 584 nlp~--~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~ 657 (676)
||.. ...+..+...|.+.+..+|. +||.|..|.|... .+.|++||+|.++++|.+|++.|||.
T Consensus 369 n~~~~~~~~~~~~~~~~~~dv~~e~~-k~G~v~~v~v~~~----------~~~G~~fV~F~~~e~A~~A~~~lnGr 433 (457)
T TIGR01622 369 NMFDPATEEEPNFDNEILDDVKEECS-KYGGVVHIYVDTK----------NSAGKIYLKFSSVDAALAAFQALNGR 433 (457)
T ss_pred cCCCCcccccchHHHHHHHHHHHHHH-hcCCeeEEEEeCC----------CCceeEEEEECCHHHHHHHHHHhcCc
Confidence 9943 33334444444445555555 5999999988743 46799999999999999999999997
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.6e-33 Score=303.16 Aligned_cols=181 Identities=25% Similarity=0.424 Sum_probs=156.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
...++|||+|||+.+++++|+++|..||.|.+|.|+.++.+|+++|||||+|.+.++|++|++.|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred cCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCC
Q 005812 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (676)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (676)
........ .. + .
T Consensus 185 ~~~p~a~~---------~~----~-------------------------------~------------------------ 196 (612)
T TIGR01645 185 SNMPQAQP---------II----D-------------------------------M------------------------ 196 (612)
T ss_pred cccccccc---------cc----c-------------------------------c------------------------
Confidence 22110000 00 0 0
Q ss_pred CCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCcee
Q 005812 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~ 453 (676)
........++|||+|||+++++++|+++|+.||.|.
T Consensus 197 --------------------------------------------~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~ 232 (612)
T TIGR01645 197 --------------------------------------------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV 232 (612)
T ss_pred --------------------------------------------ccccccccceEEeecCCCCCCHHHHHHHHhhcCCee
Confidence 000111236899999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 454 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 454 ~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
+++|+++..++.++|||||+|.+.++|.+|+..|| ++.|+|+.|.|.++.++.
T Consensus 233 svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amN-----g~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 233 KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred EEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhC-----CCeeCCeEEEEEecCCCc
Confidence 99999998889999999999999999999999999 999999999999998754
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.9e-33 Score=312.15 Aligned_cols=277 Identities=21% Similarity=0.248 Sum_probs=211.0
Q ss_pred hcccCcEEEEcCCCccccHHHHHHHhhcC------------CCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHH
Q 005812 117 KQRVARTVIIGGLLNADMAEEVHRLAGSI------------GTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKS 184 (676)
Q Consensus 117 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~------------G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~ 184 (676)
..+..++|||+|||+.+++++|+++|..+ +.|..+.+ ++.+|||||+|.+.++
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------------~~~kg~afVeF~~~e~ 235 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------------NKEKNFAFLEFRTVEE 235 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------------CCCCCEEEEEeCCHHH
Confidence 34567899999999999999999999975 23444432 4568999999999999
Q ss_pred HHHHHHHhCCCeecCeEEEEecCCCCC-----------------------------CCCCCcEEEEcCCCCCCCHHHHHH
Q 005812 185 ACASVALLHQKEIKGGTVWARQLGGEG-----------------------------SKTQKWKLIIRNIPFKAKVNEIKD 235 (676)
Q Consensus 185 A~~A~~~l~~~~~~~~~i~v~~~~~~~-----------------------------~~~~~~~v~V~nLp~~~~e~~l~~ 235 (676)
|..||+ |+|..|.|..|.+....... .....++|||+|||..+++++|++
T Consensus 236 A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~ 314 (509)
T TIGR01642 236 ATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKE 314 (509)
T ss_pred Hhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 999995 99999999999885321100 112347999999999999999999
Q ss_pred hhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCC
Q 005812 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGN 315 (676)
Q Consensus 236 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~ 315 (676)
+|+.||.|..+.|+.+..+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++..............
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~-------- 386 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNG-------- 386 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccc--------
Confidence 999999999999999988999999999999999999999999999999999999999854321000000000
Q ss_pred CCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhcc
Q 005812 316 SDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNE 395 (676)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (676)
. .+.. ...... ..
T Consensus 387 -~--------------------------~~~~----------------------~~~~~~-----~~------------- 399 (509)
T TIGR01642 387 -M--------------------------APVT----------------------LLAKAL-----SQ------------- 399 (509)
T ss_pred -c--------------------------cccc----------------------cccccc-----hh-------------
Confidence 0 0000 000000 00
Q ss_pred ccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCC----------CHHHHHHHHHhCCceeEEEEeecC---C
Q 005812 396 SAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL----------DNEEVKQRFSAFGEVVSFVPVLHQ---V 462 (676)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~----------teedl~~~F~~~G~v~~v~i~~~~---~ 462 (676)
... .....++.+|+|.||...- ..++|+++|++||.|..|.|+++. .
T Consensus 400 --~~~------------------~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~ 459 (509)
T TIGR01642 400 --SIL------------------QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRN 459 (509)
T ss_pred --hhc------------------cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCC
Confidence 000 0012245799999996421 236899999999999999988653 2
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccC
Q 005812 463 TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (676)
Q Consensus 463 ~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~ 509 (676)
++...|+|||+|.+.++|.+|+..|| |..|+|+.|.|.|...
T Consensus 460 ~~~~~G~~fV~F~~~e~A~~A~~~ln-----Gr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 460 STPGVGKVFLEYADVRSAEKAMEGMN-----GRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCcceEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEeCH
Confidence 34567999999999999999999999 9999999999999653
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.6e-34 Score=281.32 Aligned_cols=373 Identities=21% Similarity=0.322 Sum_probs=237.6
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCC-eec
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK-EIK 198 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~-~~~ 198 (676)
....+||+.||..++|.||+.+|++||.|.+|.|++||.+ |.++|+|||.|.+.++|.+|+.+|++. .|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t---------~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKST---------GQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccccc---------CcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 3557999999999999999999999999999999999964 789999999999999999999999775 556
Q ss_pred CeE--EEEecCCCCCC-CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 005812 199 GGT--VWARQLGGEGS-KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (676)
Q Consensus 199 ~~~--i~v~~~~~~~~-~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 275 (676)
|.. |.++....+.. ....++|||+-|+..++|.+|+++|++||.|++|.|.++. .+.++|||||.|.+.+.|..||
T Consensus 104 G~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred CCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHH
Confidence 654 44554433322 2457899999999999999999999999999999999986 7899999999999999999999
Q ss_pred HHhCCce-e--CCeeEEEEEecCCCCCCcCCcccCcc-------C--CCCCCCCCCCCCCCCCCcccc--cCCCCCCc--
Q 005812 276 QKFNGQK-F--GKRPIAVDWAVPKNIYSSGGAAAGVQ-------N--KGDGNSDSGSDDDLGDDDAET--ASDDSNSS-- 339 (676)
Q Consensus 276 ~~l~~~~-~--~g~~i~v~~a~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-- 339 (676)
+.|||.. + +..+|.|.|+++++.+.......... + .......-... .....+ +.-.+...
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l----~~~~~~~~Qq~~~sqn~g 258 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGAL----SNGYQGPQQQTQQSQNVG 258 (510)
T ss_pred HhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhcc----CcccCchhhhccccCCCc
Confidence 9999986 4 45789999999876544322100000 0 00000000000 000000 00000000
Q ss_pred cccCCCCCCCch-hHHH---HHHHH----hhcccccC-----------CCCCCCCCccc---------------------
Q 005812 340 EKEDLPSNADFD-EEVD---IARKV----LNKLTSTT-----------GSLPSLSDDSA--------------------- 379 (676)
Q Consensus 340 ~~~~~~~~~~~~-~~~~---~~~~~----~~~~~~~~-----------g~~~~~~~~~~--------------------- 379 (676)
.-...+.-.... .... .+... -....... +...++.....
T Consensus 259 ~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~ 338 (510)
T KOG0144|consen 259 TLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTF 338 (510)
T ss_pred ccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcC
Confidence 000000000000 0000 00000 00000000 00000000000
Q ss_pred -----------------------------cccCCCCCCCchhhccccccccc-----------cccCCCCCCCCCCCccc
Q 005812 380 -----------------------------LVKGNKEQDSDKTVNESAKVSDV-----------SKLNSSKSKPKSLKQTE 419 (676)
Q Consensus 380 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 419 (676)
...+.....-.........++.. ...+.....+.......
T Consensus 339 p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q 418 (510)
T KOG0144|consen 339 PGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQ 418 (510)
T ss_pred CCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCcc
Confidence 00000000000000000000000 00000000000111123
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 420 GEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 420 ~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
-....+..|||.+||-+.-+.+|...|..||.|.+.+++.|+.++.+++|+||.|++..+|..||..|| |+.+++
T Consensus 419 ~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amn-----gfQig~ 493 (510)
T KOG0144|consen 419 VEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMN-----GFQIGS 493 (510)
T ss_pred ccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhc-----chhhcc
Confidence 356678899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cEEEEEEccCch
Q 005812 500 RQLTVLKALDKK 511 (676)
Q Consensus 500 r~l~v~~a~~k~ 511 (676)
++|+|...+.+.
T Consensus 494 KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 494 KRLKVQLKRDRN 505 (510)
T ss_pred ccceEEeeeccC
Confidence 999999876653
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.7e-32 Score=295.34 Aligned_cols=170 Identities=14% Similarity=0.204 Sum_probs=154.0
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
...++|||+|||+++++++|+++|..||.|.+|+++.++. .|+++|||||+|.+.++|.+|+..|||..+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~---------TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---------TGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC---------CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 4567999999999999999999999999999999998874 4899999999999999999999999999999
Q ss_pred CeEEEEecCCCCC-----------CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecC
Q 005812 199 GGTVWARQLGGEG-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (676)
Q Consensus 199 ~~~i~v~~~~~~~-----------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 267 (676)
|+.|.|....... .....++|||+|||.++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+
T Consensus 176 GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 176 GRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 9999986432211 11234799999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 005812 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 268 ~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~ 297 (676)
.++|.+|+..||+..|+|+.|+|.++.+..
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999999999999987643
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-33 Score=260.34 Aligned_cols=233 Identities=26% Similarity=0.451 Sum_probs=191.1
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecC
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~ 199 (676)
..|||||+||.+++||+-|..||++.|.|..++++.+..-
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~---------------------------------------- 44 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELK---------------------------------------- 44 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhc----------------------------------------
Confidence 4579999999999999999999999999999998754210
Q ss_pred eEEEEecCC--CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 005812 200 GTVWARQLG--GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (676)
Q Consensus 200 ~~i~v~~~~--~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (676)
.+|..... .........-|||+.|...++-++|++.|.+||.|.+++|++|..+++++|||||.|.+.++|+.||..
T Consensus 45 -v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 45 -VNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred -cccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 11111111 111222356799999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHH
Q 005812 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIA 357 (676)
Q Consensus 278 l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (676)
|||..|++|.|+-.|+..+..-.. .. ...|+
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e~n-----~~--------------------------------------~ltfd------ 154 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSEMN-----GK--------------------------------------PLTFD------ 154 (321)
T ss_pred hCCeeeccceeeccccccCccccC-----CC--------------------------------------CccHH------
Confidence 999999999999999977651000 00 00000
Q ss_pred HHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCC
Q 005812 358 RKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL 437 (676)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~ 437 (676)
..++ .....+++||++||+..+
T Consensus 155 -eV~N---------------------------------------------------------Qssp~NtsVY~G~I~~~l 176 (321)
T KOG0148|consen 155 -EVYN---------------------------------------------------------QSSPDNTSVYVGNIASGL 176 (321)
T ss_pred -HHhc---------------------------------------------------------cCCCCCceEEeCCcCccc
Confidence 0000 022346899999999999
Q ss_pred CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 438 teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
+|++|++.|+.||.|.+|+|+++ +|||||.|.+.|.|.+||..|| +..+.|+.+++.|.+...
T Consensus 177 te~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mN-----ntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 177 TEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMN-----NTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred cHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhc-----CceeCceEEEEeccccCC
Confidence 99999999999999999999977 7899999999999999999999 999999999999987654
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=6e-33 Score=291.40 Aligned_cols=370 Identities=20% Similarity=0.294 Sum_probs=274.2
Q ss_pred cceEEEEecCHHHHHHHHHHhCCceecCeEEEEeeccccchHH-----------Hhh--hhhchhhhhhhhhhccCCCCC
Q 005812 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE-----------QRR--SKVTQEVQAEDIEKTMDNKDG 77 (676)
Q Consensus 11 ~G~afV~F~~~edA~~Al~~~~g~~i~gr~i~v~~a~~k~~~~-----------~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (676)
+=||||.|..+++|.+|...++|+.+.||-|.|.++..+.... ..+ ...........|+..+++.+.
T Consensus 246 ~lfa~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~a 325 (725)
T KOG0110|consen 246 KLFAFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANA 325 (725)
T ss_pred HhhHHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccH
Confidence 3469999999999999999999999999999998886664332 111 111122344788888888888
Q ss_pred cccccccccchhhcc---CCCCCC------------Cccccc-CcccCCCCccchhcccCcEEEEcCCCccccHHHHHHH
Q 005812 78 VISGAEKHSSKLLES---GKTVKP------------RKAATL-GIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRL 141 (676)
Q Consensus 78 ~~~~~~~~~~~~~~~---~~~~~~------------r~~~~~-~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~ 141 (676)
.....+.+++....- ...... ...... ...-.+-...++..+...-++|+|||..+..++|..+
T Consensus 326 va~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~ 405 (725)
T KOG0110|consen 326 VAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEA 405 (725)
T ss_pred HHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHH
Confidence 776666554433310 000000 000000 0000000123446667789999999999999999999
Q ss_pred hhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEecCCC------------
Q 005812 142 AGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGG------------ 209 (676)
Q Consensus 142 F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~~~~~------------ 209 (676)
|..||+|..+.+| +.|. .++|+|.++.+|.+|+..|.+..+...++++...+.
T Consensus 406 F~~fG~i~rvllp------------~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~ 470 (725)
T KOG0110|consen 406 FLRFGEIGRVLLP------------PGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDL 470 (725)
T ss_pred hhcccccceeecC------------cccc---eeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCcccccc
Confidence 9999999999654 1233 289999999999999999988888777665421100
Q ss_pred --------------------------CC------------CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEccc
Q 005812 210 --------------------------EG------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN 251 (676)
Q Consensus 210 --------------------------~~------------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~ 251 (676)
.. .....++|||+||+++++.++|..+|..+|.|.++.|...
T Consensus 471 ~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kk 550 (725)
T KOG0110|consen 471 SAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKK 550 (725)
T ss_pred ccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecc
Confidence 00 0112244999999999999999999999999999988775
Q ss_pred CCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCc
Q 005812 252 TDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDD 328 (676)
Q Consensus 252 ~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (676)
+.. -.+.|||||+|.++++|+.|++.|+|+.++|+.|.|.++..+.. .... +
T Consensus 551 kd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~--~~~g---K-------------------- 605 (725)
T KOG0110|consen 551 KDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA--STVG---K-------------------- 605 (725)
T ss_pred ccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc--cccc---c--------------------
Confidence 422 13559999999999999999999999999999999999862110 0000 0
Q ss_pred ccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCC
Q 005812 329 AETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSS 408 (676)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (676)
T Consensus 606 -------------------------------------------------------------------------------- 605 (725)
T KOG0110|consen 606 -------------------------------------------------------------------------------- 605 (725)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 005812 409 KSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (676)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~ 488 (676)
..........|.|+|||+.++..+|+++|..||.|.+|+|+.....+.++|||||+|-++.+|.+|+.+|.
T Consensus 606 ---------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 606 ---------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred ---------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 00011124689999999999999999999999999999999876667789999999999999999999999
Q ss_pred CCCCCCeeecCcEEEEEEccCchhhh
Q 005812 489 TTSGLGIFLKGRQLTVLKALDKKLAH 514 (676)
Q Consensus 489 ~~~~~g~~l~gr~l~v~~a~~k~~~~ 514 (676)
.++|.||.|.+.||..-....
T Consensus 677 -----STHlyGRrLVLEwA~~d~~~e 697 (725)
T KOG0110|consen 677 -----STHLYGRRLVLEWAKSDNTME 697 (725)
T ss_pred -----ccceechhhheehhccchHHH
Confidence 999999999999998866533
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.8e-31 Score=296.12 Aligned_cols=307 Identities=19% Similarity=0.208 Sum_probs=204.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccC------------CceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPV------------GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (676)
.....++|||+|||+.+++++|+++|..+ +.|..+.+.. .+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~------~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK------EKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC------CCCEEEEEeCCHHHHhhhhc-CC
Confidence 34456899999999999999999999874 3455555543 67999999999999999995 99
Q ss_pred CceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHH
Q 005812 280 GQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARK 359 (676)
Q Consensus 280 ~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (676)
|..|.|+.|.|........ ....... ...... ...
T Consensus 244 g~~~~g~~l~v~r~~~~~~---~~~~~~~---~~~~~~-----------------------------~~~---------- 278 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIP---VPQITPE---VSQKNP-----------------------------DDN---------- 278 (509)
T ss_pred CeEeeCceeEecCccccCC---ccccCCC---CCCCCC-----------------------------ccc----------
Confidence 9999999999875422110 0000000 000000 000
Q ss_pred HhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCH
Q 005812 360 VLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDN 439 (676)
Q Consensus 360 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te 439 (676)
.. ... . ...........++|||+|||+.+++
T Consensus 279 -----------~~----------------------------~~~-------~---~~~~~~~~~~~~~l~v~nlp~~~~~ 309 (509)
T TIGR01642 279 -----------AK----------------------------NVE-------K---LVNSTTVLDSKDRIYIGNLPLYLGE 309 (509)
T ss_pred -----------cc----------------------------ccc-------c---ccccccCCCCCCEEEEeCCCCCCCH
Confidence 00 000 0 0000001123479999999999999
Q ss_pred HHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhh
Q 005812 440 EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEID 519 (676)
Q Consensus 440 edl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~ 519 (676)
++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..|+..|| |..|+|+.|.|.++..........
T Consensus 310 ~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~-----g~~~~~~~l~v~~a~~~~~~~~~~-- 382 (509)
T TIGR01642 310 DQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN-----GKDTGDNKLHVQRACVGANQATID-- 382 (509)
T ss_pred HHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEECccCCCCCCcc--
Confidence 9999999999999999999998899999999999999999999999999 999999999999986532111000
Q ss_pred hhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecCCcc--c--------
Q 005812 520 KSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKS--M-------- 589 (676)
Q Consensus 520 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nlp~~--~-------- 589 (676)
..+ +...... ....+. . ..+. . ...+..+|+|.||+.. +
T Consensus 383 --------~~~------~~~~~~~-~~~~~~-----------~---~~~~-~-~~~~s~v~~l~N~~~~~~l~~d~~~~~ 431 (509)
T TIGR01642 383 --------TSN------GMAPVTL-LAKALS-----------Q---SILQ-I-GGKPTKVVQLTNLVTGDDLMDDEEYEE 431 (509)
T ss_pred --------ccc------ccccccc-ccccch-----------h---hhcc-c-cCCCceEEEeccCCchhHhcCcchHHH
Confidence 000 0000000 000000 0 0000 0 0113468999999642 1
Q ss_pred CHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCCCCcccCccc
Q 005812 590 TEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSKLFYHHCFDA 669 (676)
Q Consensus 590 te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~~~~~~~~~~ 669 (676)
..++|+++|. +||.|.+|.|+++.... ..+.+.|+|||+|.++++|.+||..|||... + .+.++|
T Consensus 432 ~~edl~~~f~---------~~G~v~~v~i~~~~~~~---~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~--~-gr~v~~ 496 (509)
T TIGR01642 432 IYEDVKTEFS---------KYGPLINIVIPRPNGDR---NSTPGVGKVFLEYADVRSAEKAMEGMNGRKF--N-DRVVVA 496 (509)
T ss_pred HHHHHHHHHH---------hcCCeeEEEeeccCcCC---CcCCCcceEEEEECCHHHHHHHHHHcCCCEE--C-CeEEEE
Confidence 2357788887 59999999998753211 1235679999999999999999999999742 2 355555
Q ss_pred ccc
Q 005812 670 ADA 672 (676)
Q Consensus 670 ~~~ 672 (676)
+|.
T Consensus 497 ~~~ 499 (509)
T TIGR01642 497 AFY 499 (509)
T ss_pred EEe
Confidence 553
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-31 Score=263.26 Aligned_cols=173 Identities=27% Similarity=0.408 Sum_probs=150.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce-e--CCeeEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-F--GKRPIA 289 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~--~g~~i~ 289 (676)
..+.-++||+-+|..|+|.||+.+|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+||+.. | ..++|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3456789999999999999999999999999999999999999999999999999999999999998865 4 347888
Q ss_pred EEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCC
Q 005812 290 VDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 369 (676)
Q Consensus 290 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 369 (676)
|.+++....
T Consensus 111 vk~Ad~E~e----------------------------------------------------------------------- 119 (510)
T KOG0144|consen 111 VKYADGERE----------------------------------------------------------------------- 119 (510)
T ss_pred ecccchhhh-----------------------------------------------------------------------
Confidence 888754321
Q ss_pred CCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhC
Q 005812 370 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 449 (676)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~ 449 (676)
.....+.|||+-|+..+||.||+++|++|
T Consensus 120 ---------------------------------------------------r~~~e~KLFvg~lsK~~te~evr~iFs~f 148 (510)
T KOG0144|consen 120 ---------------------------------------------------RIVEERKLFVGMLSKQCTENEVREIFSRF 148 (510)
T ss_pred ---------------------------------------------------ccccchhhhhhhccccccHHHHHHHHHhh
Confidence 00123689999999999999999999999
Q ss_pred CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc--EEEEEEccCchh
Q 005812 450 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR--QLTVLKALDKKL 512 (676)
Q Consensus 450 G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr--~l~v~~a~~k~~ 512 (676)
|.|++|+|++|. .+.++|||||+|.+.+-|..|++.||. ...+.|+ +|.|.||.+++.
T Consensus 149 G~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng----~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 149 GHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNG----TQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred Cccchhhheecc-cccccceeEEEEehHHHHHHHHHhhcc----ceeeccCCCceEEEecccCCC
Confidence 999999999985 689999999999999999999999992 3556664 999999998663
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-29 Score=236.58 Aligned_cols=163 Identities=26% Similarity=0.422 Sum_probs=138.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
..+||+.|...++-|+|++.|.+||.|..++|++|..+++++|||||.|-..++|++||..|| |..|++|.|+-.
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn-----GqWlG~R~IRTN 137 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN-----GQWLGRRTIRTN 137 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhC-----Ceeeccceeecc
Confidence 479999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecC
Q 005812 506 KALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL 585 (676)
Q Consensus 506 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nl 585 (676)
||-.|..... +.+ ++ .++- -....| ..|+|||.||
T Consensus 138 WATRKp~e~n--------------------------~~~----lt----------fdeV-~NQssp----~NtsVY~G~I 172 (321)
T KOG0148|consen 138 WATRKPSEMN--------------------------GKP----LT----------FDEV-YNQSSP----DNTSVYVGNI 172 (321)
T ss_pred ccccCccccC--------------------------CCC----cc----------HHHH-hccCCC----CCceEEeCCc
Confidence 9987751110 000 00 0000 001112 3488999999
Q ss_pred CcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCC
Q 005812 586 PKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPS 659 (676)
Q Consensus 586 p~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~ 659 (676)
+..+||++|++.|+ .||.|.+|++.++ +||+||.|.++|.|.+||-.+||...
T Consensus 173 ~~~lte~~mr~~Fs---------~fG~I~EVRvFk~------------qGYaFVrF~tkEaAahAIv~mNntei 225 (321)
T KOG0148|consen 173 ASGLTEDLMRQTFS---------PFGPIQEVRVFKD------------QGYAFVRFETKEAAAHAIVQMNNTEI 225 (321)
T ss_pred CccccHHHHHHhcc---------cCCcceEEEEecc------------cceEEEEecchhhHHHHHHHhcCcee
Confidence 99999999999999 6999999999977 89999999999999999999998654
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3e-29 Score=259.32 Aligned_cols=172 Identities=26% Similarity=0.468 Sum_probs=156.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.+..+++++|||||+|.++++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCC
Q 005812 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (676)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 371 (676)
|+.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 9865310
Q ss_pred CCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCc
Q 005812 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~ 451 (676)
....++|||.|||+.+++++|+++|++||.
T Consensus 190 --------------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 190 --------------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred --------------------------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 001258999999999999999999999999
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC--cEEEEEEccCch
Q 005812 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKK 511 (676)
Q Consensus 452 v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g--r~l~v~~a~~k~ 511 (676)
|..++|++++.++.++|||||+|.+.++|.+|++.|| +..+.| ++|.|.++....
T Consensus 220 V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-----g~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 220 IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN-----NVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCccc
Confidence 9999999998899999999999999999999999999 888866 699999987653
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=1.9e-28 Score=253.32 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=155.0
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
...++|||+|||+++++++|+++|+.||.|.+|+|+.++. .++++|||||+|.++++|.+|++.||+..+.
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~---------tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK---------TGYSFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------CCccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 3567999999999999999999999999999999998764 4889999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 005812 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (676)
Q Consensus 199 ~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 278 (676)
++.|.|............++|||+|||..+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|++||+.|
T Consensus 176 gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 176 NKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred CceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 99999976544444456788999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceeCC--eeEEEEEecCCC
Q 005812 279 NGQKFGK--RPIAVDWAVPKN 297 (676)
Q Consensus 279 ~~~~~~g--~~i~v~~a~~~~ 297 (676)
|+..+.+ +.|.|.|+....
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCCccCCCceeEEEEECCccc
Confidence 9999865 789999987643
No 31
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=228.37 Aligned_cols=417 Identities=19% Similarity=0.263 Sum_probs=270.4
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhC--CCee
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH--QKEI 197 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--~~~~ 197 (676)
.++-|.++|||++++|++|..++..||.|..+.+.. |++ .||++|.+.++|..-+.... -..+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk-------------Gkn--QAflem~d~~sAvtmv~~y~~~~p~l 91 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK-------------GKN--QAFLEMADEESAVTMVNYYTSVTPVL 91 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeec-------------cch--hhhhhhcchhhhhheeecccccCccc
Confidence 567899999999999999999999999999988542 333 69999999999988443221 1234
Q ss_pred cCeEEEEecCC---------------------------------C-------CCCCCCCcEEEEcCCCCCCCHHHHHHhh
Q 005812 198 KGGTVWARQLG---------------------------------G-------EGSKTQKWKLIIRNIPFKAKVNEIKDMF 237 (676)
Q Consensus 198 ~~~~i~v~~~~---------------------------------~-------~~~~~~~~~v~V~nLp~~~~e~~l~~~F 237 (676)
.|.+|++.... . ...+..--+++|.|+-+.++-+-|..+|
T Consensus 92 r~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvF 171 (492)
T KOG1190|consen 92 RGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVF 171 (492)
T ss_pred cCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHH
Confidence 45555543100 0 0111123467899999999999999999
Q ss_pred ccCCceEEEEEcccCCCCCceeE-EEEEecCHHHHHHHHHHhCCcee--CCeeEEEEEecCCCCCCcCCcccCccCCCCC
Q 005812 238 SPVGLVWNVYIPHNTDTGLSKGF-AFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDG 314 (676)
Q Consensus 238 ~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~ 314 (676)
++||.|..|.-... +.|| |+|+|.+.+.|+.|...|+|..| +.+.|+|+|++-......-.. ....
T Consensus 172 S~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynn------dkSR 240 (492)
T KOG1190|consen 172 SKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNN------DKSR 240 (492)
T ss_pred hhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccc------cccc
Confidence 99999998766553 3343 99999999999999999999988 457888888865433221110 0000
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhc
Q 005812 315 NSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVN 394 (676)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (676)
+.+ .-..|..+. +..+...+... .+..+... +.+...+...
T Consensus 241 DyT-----------------------np~LP~gd~----~p~l~~~~~aa---~~~~~~~~---g~p~aip~~~------ 281 (492)
T KOG1190|consen 241 DYT-----------------------NPDLPVGDG----QPSLDQLMAAA---FGSVPAVH---GAPLAIPSGA------ 281 (492)
T ss_pred ccc-----------------------CCCCCCCcc----ccccchhhhcc---cccccccc---CCcccCCccc------
Confidence 000 000000000 00000000000 00000000 0000000000
Q ss_pred cccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCC-CCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEE
Q 005812 395 ESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP-FDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLK 473 (676)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp-~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~ 473 (676)
........+... .. .+..|.|.||. +.+|.+-|..+|+.||.|..|+|+.++ +--|+|.
T Consensus 282 -----------~~a~~a~~~~~~---~~-~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQ 341 (492)
T KOG1190|consen 282 -----------AGANAADGKIES---PS-ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQ 341 (492)
T ss_pred -----------hhhccccccccc---CC-CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----Ccceeee
Confidence 000000000000 00 14788888886 568999999999999999999999875 3469999
Q ss_pred eCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhH
Q 005812 474 FKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDD 553 (676)
Q Consensus 474 F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 553 (676)
|.+...|+-|+.+|+ |..|.|++|+|.+++ ++++.+..+|+...+-... +....
T Consensus 342 msd~~qAqLA~~hL~-----g~~l~gk~lrvt~SK-------------------H~~vqlp~egq~d~glT~d--y~~sp 395 (492)
T KOG1190|consen 342 MSDGQQAQLAMEHLE-----GHKLYGKKLRVTLSK-------------------HTNVQLPREGQEDQGLTKD--YGNSP 395 (492)
T ss_pred ecchhHHHHHHHHhh-----cceecCceEEEeecc-------------------CccccCCCCCCcccccccc--CCCCc
Confidence 999999999999999 999999999999965 3455556665544333221 11111
Q ss_pred HHHHHHHHHHHhhcCCCCCccccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCc
Q 005812 554 MSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYS 633 (676)
Q Consensus 554 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s 633 (676)
+. +..++...-..|...+..+|+..|+|.+++|++++++|.+ .-|.|+..++.. ..
T Consensus 396 Lh-----rfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~--------~g~~vkafkff~-----------kd 451 (492)
T KOG1190|consen 396 LH-----RFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE--------PGGQVKAFKFFQ-----------KD 451 (492)
T ss_pred hh-----hccCcccccccccCCchhheeeccCCcccchhHHHHhhhc--------CCceEEeeeecC-----------CC
Confidence 11 1112222222455556779999999999999999999996 455555555542 35
Q ss_pred ceEEEEEeCChHHHHHHHHHHcCCCCCCCcccCccccc
Q 005812 634 RGVAFVEFTEHQHALVALRVLNNNPSKLFYHHCFDAAD 671 (676)
Q Consensus 634 ~g~afV~F~~~~~A~~Ai~~lng~~~~~~~~~~~~~~~ 671 (676)
+-+|++.+.+.|+|..|+-.+++|.+--+.+.|...++
T Consensus 452 ~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 452 RKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred cceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 77999999999999999999999998778888876554
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5e-26 Score=220.33 Aligned_cols=179 Identities=27% Similarity=0.489 Sum_probs=154.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.|+|||+.+.+...|+.|+..|.+||+|.+|.+..|+.+++++|||||+|+-+|.|+.|++.|||..++||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999973 2
Q ss_pred CCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCC
Q 005812 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (676)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 375 (676)
.+..... .-.+.++.....
T Consensus 191 sNmpQAQ-------------------------------------------------piID~vqeeAk~------------ 209 (544)
T KOG0124|consen 191 SNMPQAQ-------------------------------------------------PIIDMVQEEAKK------------ 209 (544)
T ss_pred CCCcccc-------------------------------------------------hHHHHHHHHHHh------------
Confidence 2211000 001122211111
Q ss_pred CccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEE
Q 005812 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (676)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v 455 (676)
-++|||..+.++.+++||+..|+.||.|.+|
T Consensus 210 -------------------------------------------------fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C 240 (544)
T KOG0124|consen 210 -------------------------------------------------FNRIYVASVHPDLSETDIKSVFEAFGEIVKC 240 (544)
T ss_pred -------------------------------------------------hheEEeeecCCCccHHHHHHHHHhhcceeeE
Confidence 2589999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 456 ~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
.+-+++..+.++|||||+|.+..+-..|+..|| -+-|+|..|+|..+....
T Consensus 241 ~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN-----lFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 241 QLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred EeeccCCCCCccceeeEEeccccchHHHhhhcc-----hhhcccceEecccccCCC
Confidence 999998888899999999999999999999999 899999999999988755
No 33
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=8.4e-25 Score=216.62 Aligned_cols=243 Identities=16% Similarity=0.155 Sum_probs=202.6
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhh-cCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAG-SIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (676)
...|.+||+|||+++.+++|++||+ ..|+|+.|.+..|. .|+++|+|.|+|.++|.+++|++.||...+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~----------~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE----------SGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc----------CCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 3456799999999999999999999 56899999998774 599999999999999999999999999999
Q ss_pred cCeEEEEecCCCCC------CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHH
Q 005812 198 KGGTVWARQLGGEG------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271 (676)
Q Consensus 198 ~~~~i~v~~~~~~~------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 271 (676)
.|++|.|....... ........|++++...+-..-|...|..-|...+-.+.+|. ++.+++..+++|++.-.+
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~-Dr~sr~~~t~t~~~~~~~ 190 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDD-DRLSRRNNTNTMSNDYNN 190 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccc-cccccccCcccccccccc
Confidence 99999997654322 12345789999999999999999999887877777777764 788999999999999888
Q ss_pred HHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCch
Q 005812 272 ESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFD 351 (676)
Q Consensus 272 ~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (676)
..++..++.....-+.+++ +..|
T Consensus 191 ~~~~~lfgl~~~Flr~~h~-f~pP-------------------------------------------------------- 213 (608)
T KOG4212|consen 191 SSNYNLFGLSASFLRSLHI-FSPP-------------------------------------------------------- 213 (608)
T ss_pred chhhhcccchhhhhhhccC-CCCC--------------------------------------------------------
Confidence 8888865554444444443 2211
Q ss_pred hHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEc
Q 005812 352 EEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFIC 431 (676)
Q Consensus 352 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 431 (676)
....+||.
T Consensus 214 ------------------------------------------------------------------------l~~k~fva 221 (608)
T KOG4212|consen 214 ------------------------------------------------------------------------LHNKVFVA 221 (608)
T ss_pred ------------------------------------------------------------------------ccceeeee
Confidence 12479999
Q ss_pred CCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEc
Q 005812 432 NLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 507 (676)
Q Consensus 432 nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a 507 (676)
||.+.+..+.|++.|.-.|.|.+|.+-.|+. |.++|+|.++|..+-+|..|+..++ +--+..++.++.+.
T Consensus 222 nl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~-----~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 222 NLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLD-----RQGLFDRRMTVRLD 291 (608)
T ss_pred ccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhc-----cCCCccccceeecc
Confidence 9999999999999999999999998888875 6889999999999999999999998 76777777777663
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=2.3e-26 Score=236.05 Aligned_cols=325 Identities=21% Similarity=0.311 Sum_probs=228.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
..++||+--|+...+..+|.++|+.+|.|..|+++.|..++.++|.|||+|.+.+....|+. |.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 35889999999999999999999999999999999999999999999999999999999996 89999999999998753
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
...... .+.....+
T Consensus 257 aeknr~-------------------------------------------------------------a~~s~a~~----- 270 (549)
T KOG0147|consen 257 AEKNRA-------------------------------------------------------------ANASPALQ----- 270 (549)
T ss_pred HHHHHH-------------------------------------------------------------Hhcccccc-----
Confidence 322100 00000000
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
.. ....+...|||+||.+.+++++|+.+|++||.|..
T Consensus 271 ------~k-------------------------------------~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~ 307 (549)
T KOG0147|consen 271 ------GK-------------------------------------GFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIEN 307 (549)
T ss_pred ------cc-------------------------------------ccccchhhhhhcccccCchHHHHhhhccCccccee
Confidence 00 01112234999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhhhhcccccccCccccc
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLA 534 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~ 534 (676)
|.+++|..+|.++|||||+|...++|.+|+..|| |+.|.||.|.|.....+-...............+...+.+.
T Consensus 308 v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ln-----gfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~ 382 (549)
T KOG0147|consen 308 VQLTKDSETGRSKGFGFITFVNKEDARKALEQLN-----GFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLG 382 (549)
T ss_pred eeeccccccccccCcceEEEecHHHHHHHHHHhc-----cceecCceEEEEEeeeecccccccccccccchhhccccccc
Confidence 9999998899999999999999999999999999 99999999999876654433222111100111112222111
Q ss_pred ccCc--c----cCCCCCCCCCChhHHHH----HHHHHHHHh--hcCC-------CCCccccCCeEEEecC--CcccCHHH
Q 005812 535 KEGL--I----LEGTPAAEGVSDDDMSK----RQMLHEKKM--TKLQ-------SPNFHVSRTRLVIYNL--PKSMTEKG 593 (676)
Q Consensus 535 ~~g~--~----~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~-------~p~~~~~~~~l~V~nl--p~~~te~~ 593 (676)
..|. . .++.. -+..+...-.. ......... -... .|.+.++..|+.++|+ |...|+..
T Consensus 383 ~~g~~Ql~~kla~~~~-~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n 461 (549)
T KOG0147|consen 383 SGGRNQLMAKLAEGKG-RSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPN 461 (549)
T ss_pred cccHHHHHHHHhccCC-ccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcc
Confidence 1110 0 00000 00000000000 000000000 0001 2334467789999999 99999999
Q ss_pred HHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCCCCcccCcccc
Q 005812 594 LKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSKLFYHHCFDAA 670 (676)
Q Consensus 594 l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~~~~~~~~~~~ 670 (676)
|..-+.+.|..+|. +||.|..|.+-. .|.|+.||.|.+.+.|..|+.+|||. |+..+-+-++
T Consensus 462 ~d~eI~edV~Eec~-k~g~v~hi~vd~-----------ns~g~VYvrc~s~~~A~~a~~alhgr---WF~gr~Ita~ 523 (549)
T KOG0147|consen 462 WDQEIREDVIEECG-KHGKVCHIFVDK-----------NSAGCVYVRCPSAEAAGTAVKALHGR---WFAGRMITAK 523 (549)
T ss_pred hhhHHHHHHHHHHH-hcCCeeEEEEcc-----------CCCceEEEecCcHHHHHHHHHHHhhh---hhccceeEEE
Confidence 99999999999997 699997776643 34599999999999999999999996 6654444333
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=3.5e-25 Score=227.35 Aligned_cols=330 Identities=22% Similarity=0.309 Sum_probs=222.5
Q ss_pred chhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCC
Q 005812 115 SQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ 194 (676)
Q Consensus 115 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~ 194 (676)
+-..+..++||+..|+...+..+|.++|+.+|.|..|+++.|+. .++++|.|||+|.+.+....|+. |.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~---------s~rskgi~Yvef~D~~sVp~aia-LsG 242 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN---------SRRSKGIAYVEFCDEQSVPLAIA-LSG 242 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc---------chhhcceeEEEEecccchhhHhh-hcC
Confidence 44557889999999999999999999999999999999999874 47899999999999999999996 999
Q ss_pred CeecCeEEEEecCCC--------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeE
Q 005812 195 KEIKGGTVWARQLGG--------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGF 260 (676)
Q Consensus 195 ~~~~~~~i~v~~~~~--------------~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~ 260 (676)
..+.|-+|.|..... .....+...|||+||..++++++|+.+|++||.|..|.++++.++|.++||
T Consensus 243 qrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgf 322 (549)
T KOG0147|consen 243 QRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGF 322 (549)
T ss_pred CcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCc
Confidence 999999998864221 111223334999999999999999999999999999999999999999999
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCcc
Q 005812 261 AFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSE 340 (676)
Q Consensus 261 afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (676)
|||+|.+.++|++|+..|||..|.|+.|+|.....+-...... ... .+ .+++ +-.+.
T Consensus 323 Gfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~-----~~~----~d--~D~~----d~~gl-------- 379 (549)
T KOG0147|consen 323 GFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAA-----VTQ----FD--FDED----DRQGL-------- 379 (549)
T ss_pred ceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccccccc-----ccc----cc--cchh----hcccc--------
Confidence 9999999999999999999999999999998765432111000 000 00 0000 00000
Q ss_pred ccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccC
Q 005812 341 KEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEG 420 (676)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (676)
...... ..+...+... ... -.+++.......-.. ... ......++.+ .....|... .+.
T Consensus 380 ---~~~~~g---~~Ql~~kla~-~~~--~~~~s~~~~~l~~~~--~~~------~~~~~~~~~~--~~~~~p~~~--~p~ 438 (549)
T KOG0147|consen 380 ---SLGSGG---RNQLMAKLAE-GKG--RSLPSTAISALLLLA--KLA------SAAQFNGVVR--VRSVDPADA--SPA 438 (549)
T ss_pred ---cccccc---HHHHHHHHhc-cCC--ccccchhhhHHHhcc--ccc------hHHhhcCCcC--ccccCcccc--ccc
Confidence 000000 1111111111 110 011111100000000 000 0000000000 000000100 111
Q ss_pred CCCCCCeEEEcCC--CCCCC--------HHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC
Q 005812 421 EDELQNTIFICNL--PFDLD--------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTT 490 (676)
Q Consensus 421 ~~~~~~~l~V~nL--p~~~t--------eedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~ 490 (676)
-..++.++.|+|| |...| .+||.+-+.+||.|..|.+ |+ .+-|+.||.|.+.+.|..|+.+||
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~v--d~---ns~g~VYvrc~s~~~A~~a~~alh-- 511 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFV--DK---NSAGCVYVRCPSAEAAGTAVKALH-- 511 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEE--cc---CCCceEEEecCcHHHHHHHHHHHh--
Confidence 2256678999998 22222 5789999999999998765 32 234999999999999999999999
Q ss_pred CCCCeeecCcEEEEEEcc
Q 005812 491 SGLGIFLKGRQLTVLKAL 508 (676)
Q Consensus 491 ~~~g~~l~gr~l~v~~a~ 508 (676)
|.+|.|+.|.+.|-.
T Consensus 512 ---grWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 512 ---GRWFAGRMITAKYLP 526 (549)
T ss_pred ---hhhhccceeEEEEee
Confidence 999999999999843
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=4.1e-25 Score=195.26 Aligned_cols=173 Identities=30% Similarity=0.447 Sum_probs=156.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
......+|||+||+..++++.|+++|-+.|+|.++.+++++.+...+|||||+|.++++|+-|++-||...+-|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCC
Q 005812 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (676)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 371 (676)
.+.....
T Consensus 85 kas~~~~------------------------------------------------------------------------- 91 (203)
T KOG0131|consen 85 KASAHQK------------------------------------------------------------------------- 91 (203)
T ss_pred ecccccc-------------------------------------------------------------------------
Confidence 8742110
Q ss_pred CCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCc
Q 005812 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~ 451 (676)
....+.+|||+||.+.+++.-|.+.|+.||.
T Consensus 92 -------------------------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 92 -------------------------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred -------------------------------------------------cccccccccccccCcchhHHHHHHHHHhccc
Confidence 0111368999999999999999999999998
Q ss_pred eeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 452 VVSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 452 v~~v-~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
+... .|+++..+|.++|||||.|.+.+.+.+|+..|| |..+..|+++|.++..++
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n-----gq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN-----GQYLCNRPITVSYAFKKD 178 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc-----cchhcCCceEEEEEEecC
Confidence 8763 789999999999999999999999999999999 999999999999998764
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5.5e-24 Score=206.21 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=149.7
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecC
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~ 199 (676)
.-++||||.|.+..-|+.|+..|..||+|.++.+.-|.. .++.+|||||+|+-+|.|+.|++.|||..++|
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~---------T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---------TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccc---------cccccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 467899999999999999999999999999999776654 38999999999999999999999999999999
Q ss_pred eEEEEecCCCCCC-----------CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCH
Q 005812 200 GTVWARQLGGEGS-----------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268 (676)
Q Consensus 200 ~~i~v~~~~~~~~-----------~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 268 (676)
+.|.|-..+.-.. ...-.+|||..+.++.+++||+..|+-||.|..|.+-+.+..+.++||+||+|.+.
T Consensus 183 RNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 183 RNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 262 (544)
T ss_pred ccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccc
Confidence 9999864433221 12357999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 269 RDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 269 ~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
.+-..|+..||-..++|.-++|-.+.
T Consensus 263 qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 263 QSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred cchHHHhhhcchhhcccceEeccccc
Confidence 99999999999999999999997653
No 38
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.91 E-value=1.3e-21 Score=190.71 Aligned_cols=427 Identities=18% Similarity=0.242 Sum_probs=268.5
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHh--CCCe
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL--HQKE 196 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l--~~~~ 196 (676)
..+-.|.|.+|-..+++.+|.+..+.||+|.-|.++.. +..|.|+|++.+.|+.++... +...
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---------------~r~alvefedi~~akn~Vnfaa~n~i~ 93 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---------------KRQALVEFEDIEGAKNCVNFAADNQIY 93 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---------------cceeeeeeccccchhhheehhccCccc
Confidence 34557999999999999999999999999999987643 234999999999999997633 2223
Q ss_pred ecCeEEEE--------ecCCCCCCCCCCcEEEEcCC--CCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEec
Q 005812 197 IKGGTVWA--------RQLGGEGSKTQKWKLIIRNI--PFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266 (676)
Q Consensus 197 ~~~~~i~v--------~~~~~~~~~~~~~~v~V~nL--p~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 266 (676)
+.|..... ++. +......+..|.+.=| -+.+|.+-|..++...|.|.+|.|++. +| -.|.|+|.
T Consensus 94 i~gq~Al~NyStsq~i~R~-g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFd 167 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQCIERP-GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFD 167 (494)
T ss_pred ccCchhhcccchhhhhccC-CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeec
Confidence 33332211 111 2334455666766655 456899999999999999999999875 33 45999999
Q ss_pred CHHHHHHHHHHhCCcee--CCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCC-ccccC
Q 005812 267 CKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNS-SEKED 343 (676)
Q Consensus 267 ~~~~A~~A~~~l~~~~~--~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 343 (676)
+.+.|++|...|||..| +.++|+|+|++|..+...+...+ .++-.-.+..+..+.... .....
T Consensus 168 sv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~D--------------twDyTlp~~~~~~~~g~~~~~r~~ 233 (494)
T KOG1456|consen 168 SVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKD--------------TWDYTLPDLRGPYDPGRNHYDRQR 233 (494)
T ss_pred hhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCc--------------cccccCCCCCCCCCCCCCCCcccc
Confidence 99999999999999987 56899999999876533221110 011111111111110000 00000
Q ss_pred CCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccc-cccCCCCCCCchhhccccccccccc-cCCCCCCCCCCCcccCC
Q 005812 344 LPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSA-LVKGNKEQDSDKTVNESAKVSDVSK-LNSSKSKPKSLKQTEGE 421 (676)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 421 (676)
.+....+ .++ ... .-.++..... ....+..| .................
T Consensus 234 ~p~~~~~--------------------~ps---s~~G~h~~y~sg~~-------~~p~~~~P~r~~~~~~~~~g~a~p~g 283 (494)
T KOG1456|consen 234 QPAPLGY--------------------HPS---SRGGGHSGYYSGDR-------HGPPHPPPSRYRDGYRDGRGYASPGG 283 (494)
T ss_pred CCCccCC--------------------Chh---hcCCCCCCCccccc-------CCCCCCCCCCCccccccCCCCCCCCC
Confidence 0000000 000 000 0000000000 00000000 00000000001111245
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 422 DELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 422 ~~~~~~l~V~nLp~-~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
..+++.+.|.+|.. ..+-+.|.++|..||.|..|++|+-+ .|.|.|++.+..+.++|+..|| +..+.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLn-----n~~lfG~ 353 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLN-----NIPLFGG 353 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhc-----cCccccc
Confidence 56789999999986 56889999999999999999998764 6889999999999999999999 9999999
Q ss_pred EEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeE
Q 005812 501 QLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 580 (676)
Q Consensus 501 ~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 580 (676)
+|.|.+++..-- ..-+.++..+ ++|...+++.+.-.+.....+..+.+++.| +++|
T Consensus 354 kl~v~~SkQ~~v--------------~~~~pflLpD-----gSpSfKdys~SkNnRFssp~qAsKNrIq~P-----s~vL 409 (494)
T KOG1456|consen 354 KLNVCVSKQNFV--------------SPVQPFLLPD-----GSPSFKDYSGSKNNRFSSPEQASKNRIQPP-----SNVL 409 (494)
T ss_pred eEEEeecccccc--------------ccCCceecCC-----CCcchhhcccccccccCChhHhhcccccCC-----ccee
Confidence 999987543211 1112333333 333333333222222222223333344444 4789
Q ss_pred EEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCC
Q 005812 581 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSK 660 (676)
Q Consensus 581 ~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~ 660 (676)
+..|.|..+||+.|.++|.+- --.-.+|++..-+. .....|.+||++.++|..||..||.+|..
T Consensus 410 HffNaP~~vtEe~l~~i~nek--------~v~~~svkvFp~ks--------erSssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 410 HFFNAPLGVTEEQLIGICNEK--------DVPPTSVKVFPLKS--------ERSSSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred EEecCCCccCHHHHHHHhhhc--------CCCcceEEeecccc--------cccccceeeeehHHHHHHHHHHhcccccc
Confidence 999999999999999999952 11234566664432 33468899999999999999999999883
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=1e-23 Score=186.52 Aligned_cols=168 Identities=22% Similarity=0.317 Sum_probs=152.2
Q ss_pred CcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 005812 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (676)
Q Consensus 121 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~ 200 (676)
..+|||+||+..++++-|+++|-++|+|..+++|.|+.+ ...+|||||+|.++|+|.-|++-||...|.|+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~---------~~~qGygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT---------QKHQGYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc---------ccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence 458999999999999999999999999999999998864 46799999999999999999999999999999
Q ss_pred EEEEecCCCC-CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEE-EEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 005812 201 TVWARQLGGE-GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (676)
Q Consensus 201 ~i~v~~~~~~-~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 278 (676)
+|++...+.. .....+..+||+||.+.++|..|...|+.||.|.. -.|++++.+|.++|||||.|.+.+.+.+|+..+
T Consensus 80 pIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 80 PIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred eeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 9999876522 23344589999999999999999999999999875 488899999999999999999999999999999
Q ss_pred CCceeCCeeEEEEEecCCC
Q 005812 279 NGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 279 ~~~~~~g~~i~v~~a~~~~ 297 (676)
||..+++++|.|.++..+.
T Consensus 160 ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred ccchhcCCceEEEEEEecC
Confidence 9999999999999996554
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.89 E-value=6.9e-21 Score=193.33 Aligned_cols=455 Identities=15% Similarity=0.154 Sum_probs=252.8
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecC
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~ 199 (676)
...-|.+.+|||++|++||+++|+.|+ |+.+.++ +.+|+..|-|||+|.+.+++++|++ .+...+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~-----------r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~ 75 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP-----------RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGH 75 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe-----------ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCC
Confidence 445688999999999999999999995 6666654 2459999999999999999999998 57777777
Q ss_pred eEEEEecC-----------CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEE-EEEcccCCCCCceeEEEEEecC
Q 005812 200 GTVWARQL-----------GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVKFTC 267 (676)
Q Consensus 200 ~~i~v~~~-----------~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~ 267 (676)
+.|.|-.. .+.........|-+++||+.++++||.++|+..-.+.. +.++.++ .+++.|-|||+|++
T Consensus 76 RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 76 RYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFES 154 (510)
T ss_pred ceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecC
Confidence 77766322 12223346789999999999999999999998766665 4455554 67799999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCC
Q 005812 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSN 347 (676)
Q Consensus 268 ~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (676)
.+.|++||.. |...|..+-|.|..+.................. ..+.+.. .....-.+ -.....
T Consensus 155 qe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~r-----pGpy~~~-----~a~Rg~~d-----~~~~~~ 218 (510)
T KOG4211|consen 155 QESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGR-----PGPYDRP-----GAPRGGYD-----YGQGRD 218 (510)
T ss_pred HHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccccccCC-----CCccccc-----cCCccccc-----cccccC
Confidence 9999999997 888899999999866433221111100000000 0000000 00000000 000000
Q ss_pred CCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCe
Q 005812 348 ADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNT 427 (676)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (676)
..... ...-....+.+ ...........+ ........+...... .+.............-...+..
T Consensus 219 ~~~~~--------~r~g~~~~g~~-g~~~~~~~~d~~-----~~gs~~~~~~~~~~~-~~g~~~~g~~g~~~~~~~~g~f 283 (510)
T KOG4211|consen 219 PGRNA--------TRYGAGGEGYY-GFSRYPSLQDYG-----NFGSYGGGRDPNYPV-SSGPHRQGGAGDYGNGGPGGHF 283 (510)
T ss_pred CCccc--------cccccccCCcc-ccccCccccccc-----cccccccccccccCC-CCCcccCCCcccccCCCCCCce
Confidence 00000 00000000000 000000000000 000000000000000 0000000000011112223378
Q ss_pred EEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEc
Q 005812 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 507 (676)
Q Consensus 428 l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a 507 (676)
++.++||+..++.+|.++|+..-.+ .|.|-.. .+|+.+|-|+|+|.|.++|..|+.. + +..+..|.|.+..-
T Consensus 284 v~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Amsk-d-----~anm~hrYVElFln 355 (510)
T KOG4211|consen 284 VHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMGK-D-----GANMGHRYVELFLN 355 (510)
T ss_pred eeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhcc-C-----CcccCcceeeeccc
Confidence 9999999999999999999986444 5555444 5789999999999999999999965 3 67888888877653
Q ss_pred cCchhhhhHhhhhhcccccccCccccc-----ccCcccCCCCCCCC-----C--ChhHHHHHHHHHHHHhhcCCCCC---
Q 005812 508 LDKKLAHDKEIDKSKNETNDHRNLYLA-----KEGLILEGTPAAEG-----V--SDDDMSKRQMLHEKKMTKLQSPN--- 572 (676)
Q Consensus 508 ~~k~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~p~--- 572 (676)
-... +..- .......... ..+...+..+...+ . ++..+.. ..-...-......|.
T Consensus 356 ~~~g-a~g~--------~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~~~~G~~~-~~~~~~~~~Gy~g~~~~~ 425 (510)
T KOG4211|consen 356 GAPG-ASGG--------GGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRGSPYGRPS-DGYSSPGGGGYSGPRGYG 425 (510)
T ss_pred CCcc-cccC--------ccCCCCCCccccccccCCCCccccccccCCCCCccccCCCCCCc-ccccCCCCCCCcCcccCC
Confidence 2111 0000 0000000000 00000000000000 0 0000000 000000000000000
Q ss_pred --ccccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHH
Q 005812 573 --FHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVA 650 (676)
Q Consensus 573 --~~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~A 650 (676)
.....-+|..+.+|+..++.++.++|.. ++.- +|.|.+|+.- ...|.|-|.|.+.++++.|
T Consensus 426 ~~~~~e~~~~~~rgap~~a~eadv~d~~~~---------~~~a-~~~~~yd~~~-------~~~~~a~~~~~~~~~~q~a 488 (510)
T KOG4211|consen 426 RGPQNEHFVIRMRGAPFRASEADVYDFFHP---------IRPA-QVELLYDHQF-------QRSGDARVIFYNRKDYQDA 488 (510)
T ss_pred CCccccccccCcCCCCccccccchhhcccc---------cCcc-cccccccccc-------cccCceeEEEechhhhHHH
Confidence 0001146889999999999999999994 5543 4888888653 3489999999999999999
Q ss_pred HHHH
Q 005812 651 LRVL 654 (676)
Q Consensus 651 i~~l 654 (676)
|..=
T Consensus 489 ~~~~ 492 (510)
T KOG4211|consen 489 LMKD 492 (510)
T ss_pred HHhh
Confidence 8754
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=4.2e-22 Score=185.71 Aligned_cols=299 Identities=20% Similarity=0.245 Sum_probs=176.4
Q ss_pred eEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 005812 200 GTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (676)
Q Consensus 200 ~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (676)
+.|.|++...+....+.++|||+.|...-.|+|++.+|..||.|.+|.+.+.+ +|.++|+|||.|.+..+|+.||..||
T Consensus 3 rpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 3 RPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhc
Confidence 45666665555556678999999999999999999999999999999999875 78899999999999999999999999
Q ss_pred Ccee-C--CeeEEEEEecCCCCCCcCCc-cc----CccCCCCCCCCCCCCCCCCCCcccccCC---CCCCccccCCCCCC
Q 005812 280 GQKF-G--KRPIAVDWAVPKNIYSSGGA-AA----GVQNKGDGNSDSGSDDDLGDDDAETASD---DSNSSEKEDLPSNA 348 (676)
Q Consensus 280 ~~~~-~--g~~i~v~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 348 (676)
|..- - ...|.|.+++..+....+.. .. +.-+........ -..-.+.. .+..-.....+-..
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~--------~~ay~qalmQqQa~~~at~~~~~L~ 153 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGA--------YGAYAQALMQQQAALLATVAGPYLS 153 (371)
T ss_pred ccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccch--------hHHHHHHHHHHHHHHHHhhcccccC
Confidence 9864 3 46788999865432211100 00 000000000000 00000000 00000000000000
Q ss_pred CchhH----HHHH-HHHhhccc-----ccCCCCCCC------CC---ccccccCCCCCCCchhh---ccccccc------
Q 005812 349 DFDEE----VDIA-RKVLNKLT-----STTGSLPSL------SD---DSALVKGNKEQDSDKTV---NESAKVS------ 400 (676)
Q Consensus 349 ~~~~~----~~~~-~~~~~~~~-----~~~g~~~~~------~~---~~~~~~~~~~~~~~~~~---~~~~~~~------ 400 (676)
..... .+.. .-..+.+. ...|...+. .. ......|+......... ......+
T Consensus 154 p~~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pyp 233 (371)
T KOG0146|consen 154 PMAAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYP 233 (371)
T ss_pred hhhhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCC
Confidence 00000 0000 00000000 000000000 00 00000111111000000 0000000
Q ss_pred --------------------------cccccCCCCCC-CCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCcee
Q 005812 401 --------------------------DVSKLNSSKSK-PKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453 (676)
Q Consensus 401 --------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~ 453 (676)
.+.+....-.. +.......+..+.+|+|||.+||.+..+.||.++|-.||.|.
T Consensus 234 aQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhiv 313 (371)
T KOG0146|consen 234 AQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIV 313 (371)
T ss_pred CCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccccee
Confidence 00111111111 111122346788899999999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchh
Q 005812 454 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 512 (676)
Q Consensus 454 ~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~ 512 (676)
+.+++.|..++.+++|+||.|+++.+|+.||.+|| |+.|+-++|+|.+.++|+.
T Consensus 314 SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN-----GFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 314 SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN-----GFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred eeeeeehhccccccceeeEecCCchhHHHHHHHhc-----chhhhhhhhhhhhcCcccc
Confidence 99999999999999999999999999999999999 9999999999999888763
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.88 E-value=6.2e-21 Score=189.34 Aligned_cols=213 Identities=20% Similarity=0.184 Sum_probs=170.4
Q ss_pred cCCCCcccceEEEEecCHHHHHHHHHHhCCceecCeEEEEeeccccchHHHhhhhhchhhhhhhhhhccCCCCCcccccc
Q 005812 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAE 83 (676)
Q Consensus 4 ~~~tg~s~G~afV~F~~~edA~~Al~~~~g~~i~gr~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (676)
-...|++||+|.|+|+++|.+++|++.||...+.||.|.|+--... ++ .
T Consensus 79 ~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~----q~-~-------------------------- 127 (608)
T KOG4212|consen 79 FDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE----QR-D-------------------------- 127 (608)
T ss_pred cccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch----hh-h--------------------------
Confidence 3578999999999999999999999999999999999999543110 00 0
Q ss_pred cccchhhccCCCCCCCcccccCcccCCCCccchhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhc
Q 005812 84 KHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQH 163 (676)
Q Consensus 84 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~ 163 (676)
......+.+-+.|++++....-..-|...|.--|.+..-....|
T Consensus 128 -----------------------------~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D------- 171 (608)
T KOG4212|consen 128 -----------------------------QYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRD------- 171 (608)
T ss_pred -----------------------------hhhheeeccCcccccCcceecccccccccCCCCccccCCCCccc-------
Confidence 01122355668999999999989999999988887666655544
Q ss_pred ccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCce
Q 005812 164 GLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV 243 (676)
Q Consensus 164 ~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i 243 (676)
.++.+++..++.|.+.-.+..++..++......+.+.. -.++....+||.||.+.+....|.+.|.-.|.|
T Consensus 172 ---~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv 242 (608)
T KOG4212|consen 172 ---DDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKV 242 (608)
T ss_pred ---ccccccccCccccccccccchhhhcccchhhhhhhccC------CCCCccceeeeeccccccchHHHHHHhccceee
Confidence 35788999999999999888888766655444444433 134455689999999999999999999999999
Q ss_pred EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 244 WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 244 ~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
..+.+-.+++ |.++|||.++|..+-+|-.|+..|++.-+..++..+...
T Consensus 243 ~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 243 QSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred eeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 9999888874 579999999999999999999999987777777777653
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.86 E-value=4.3e-20 Score=182.44 Aligned_cols=272 Identities=19% Similarity=0.194 Sum_probs=199.3
Q ss_pred cEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccce-EEEEeCCHHHHHHHHHHhCCCeecCe
Q 005812 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDA-SAVLYTTVKSACASVALLHQKEIKGG 200 (676)
Q Consensus 122 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~~~~~~~~ 200 (676)
-+++|.|+-+.++-+-|+.+|+.||.|..+.-. .++.+| |.|+|.+.+.|+.|...|+|..|...
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF--------------~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng 216 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITF--------------TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG 216 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEE--------------ecccchhhhhhccchhhHHHHHHhccCCcccCc
Confidence 468999999999999999999999999998743 345555 89999999999999999999999887
Q ss_pred EEEEec-------------------C------CC-----------------------C---------------CCCC--C
Q 005812 201 TVWARQ-------------------L------GG-----------------------E---------------GSKT--Q 215 (676)
Q Consensus 201 ~i~v~~-------------------~------~~-----------------------~---------------~~~~--~ 215 (676)
++.+|- . .+ + .... .
T Consensus 217 cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~ 296 (492)
T KOG1190|consen 217 CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSA 296 (492)
T ss_pred eeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCC
Confidence 665430 0 00 0 0001 1
Q ss_pred CcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 216 KWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 216 ~~~v~V~nLp~-~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
+..|.|.||.. .+|.+-|..+|.-||.|.+|+|..++. --|+|+|.+...|+-|++.|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57899999966 589999999999999999999998743 459999999999999999999999999999999997
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
......+.... .+ ...+.+. +..+-+
T Consensus 372 H~~vqlp~egq----------~d-------------------------~glT~dy-------------------~~spLh 397 (492)
T KOG1190|consen 372 HTNVQLPREGQ----------ED-------------------------QGLTKDY-------------------GNSPLH 397 (492)
T ss_pred CccccCCCCCC----------cc-------------------------ccccccC-------------------CCCchh
Confidence 76542221100 00 0000000 000000
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
.. +..+ .+-...--+++.+|++.|+|..++||+|+++|..-|-..+
T Consensus 398 rf---------------------kkpg-------------sKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vk 443 (492)
T KOG1190|consen 398 RF---------------------KKPG-------------SKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVK 443 (492)
T ss_pred hc---------------------cCcc-------------cccccccCCchhheeeccCCcccchhHHHHhhhcCCceEE
Confidence 00 0000 0000001234679999999999999999999999887766
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc-EEEEEEccC
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR-QLTVLKALD 509 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr-~l~v~~a~~ 509 (676)
...+ -++.+.+|++.+.+.++|..|+-.++ ...+++. .|+|+|+++
T Consensus 444 afkf----f~kd~kmal~q~~sveeA~~ali~~h-----nh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 444 AFKF----FQKDRKMALPQLESVEEAIQALIDLH-----NHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeee----cCCCcceeecccCChhHhhhhccccc-----cccCCCCceEEEEeecc
Confidence 5332 23457799999999999999999999 7888755 999999764
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=2e-21 Score=183.87 Aligned_cols=148 Identities=21% Similarity=0.271 Sum_probs=137.1
Q ss_pred EEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 005812 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (676)
Q Consensus 123 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i 202 (676)
.|||+|||..+++.+|+.+|++||.|.+|.|+ +.||||+.++...|..|+.+||+..|+|..|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------------KNYgFVHiEdktaaedairNLhgYtLhg~nI 66 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNI 66 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-----------------cccceEEeecccccHHHHhhcccceecceEE
Confidence 58999999999999999999999999999987 5689999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 005812 203 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (676)
Q Consensus 203 ~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 282 (676)
.|...... .....+|+|+||.+.++..+|+..|.+||+|.+|.|++ +|+||.|...++|..|++.|+++.
T Consensus 67 nVeaSksK--sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 67 NVEASKSK--SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred EEEecccc--CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 99765432 44568999999999999999999999999999999987 589999999999999999999999
Q ss_pred eCCeeEEEEEecCCC
Q 005812 283 FGKRPIAVDWAVPKN 297 (676)
Q Consensus 283 ~~g~~i~v~~a~~~~ 297 (676)
|.|++++|..+..+-
T Consensus 137 ~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRL 151 (346)
T ss_pred cccceeeeeeecccc
Confidence 999999999987654
No 45
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.85 E-value=3.4e-20 Score=188.28 Aligned_cols=300 Identities=20% Similarity=0.248 Sum_probs=191.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
.....|-+++|||.+|++||+++|+.++ |.++.+++. +|+..|-|||+|.+++++++|+++ +...+..+-|.|-.+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 3456788999999999999999999986 888777764 799999999999999999999995 888899999999877
Q ss_pred cCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCC
Q 005812 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (676)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (676)
.+....- .+...+.
T Consensus 84 ~~~e~d~---------------------------------------------------------------~~~~~g~--- 97 (510)
T KOG4211|consen 84 GGAEADW---------------------------------------------------------------VMRPGGP--- 97 (510)
T ss_pred CCccccc---------------------------------------------------------------cccCCCC---
Confidence 5432100 0000000
Q ss_pred CCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCcee
Q 005812 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~ 453 (676)
........|.+++||+.||++||.+||+..-.|.
T Consensus 98 ----------------------------------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~ 131 (510)
T KOG4211|consen 98 ----------------------------------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVP 131 (510)
T ss_pred ----------------------------------------------CCCCCCceEEecCCCccCcHHHHHHHhcCCcccc
Confidence 0001235899999999999999999999875555
Q ss_pred E-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhhhhcccc-------
Q 005812 454 S-FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNET------- 525 (676)
Q Consensus 454 ~-v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~------- 525 (676)
. +.++++ ..+++.|-|||+|.+.+.|+.|+... ...|+-|.|.|..+...+...-..........
T Consensus 132 ~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~rh------re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~ 204 (510)
T KOG4211|consen 132 DGILLPMD-QRGRPTGEAFVQFESQESAEIALGRH------RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRP 204 (510)
T ss_pred cceeeecc-CCCCcccceEEEecCHHHHHHHHHHH------HHhhccceEEeehhHHHHHHhhccccccccCCCCccccc
Confidence 5 334444 46789999999999999999999875 48889999999886543322111000000000
Q ss_pred cccCccccccc--Cccc---------------CCCCCC---CCCChhHHHHHHHHHHH-HhhcCCC----CCccccCCeE
Q 005812 526 NDHRNLYLAKE--GLIL---------------EGTPAA---EGVSDDDMSKRQMLHEK-KMTKLQS----PNFHVSRTRL 580 (676)
Q Consensus 526 ~~~~~~~~~~~--g~~~---------------~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~----p~~~~~~~~l 580 (676)
...+..+.-.. +... ...+.. ................. -.+.... -+.......+
T Consensus 205 ~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv 284 (510)
T KOG4211|consen 205 GAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFV 284 (510)
T ss_pred cCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCcee
Confidence 00000000000 0000 000000 00000000000000000 0001111 1111122679
Q ss_pred EEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHH
Q 005812 581 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRV 653 (676)
Q Consensus 581 ~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~ 653 (676)
+.++||+..++.++.++|+ ......|+|-..+ .++..|.|+|+|.|+++|..||-.
T Consensus 285 ~MRGlpy~a~~~di~nfFs----------pl~p~~v~i~ig~-------dGr~TGEAdveF~t~edav~Amsk 340 (510)
T KOG4211|consen 285 HMRGLPYDATENDIANFFS----------PLNPYRVHIEIGP-------DGRATGEADVEFATGEDAVGAMGK 340 (510)
T ss_pred eecCCCccCCCcchhhhcC----------CCCceeEEEEeCC-------CCccCCcceeecccchhhHhhhcc
Confidence 9999999999999999999 4444467776654 268899999999999999999853
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=6.6e-21 Score=180.40 Aligned_cols=149 Identities=26% Similarity=0.409 Sum_probs=137.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
..|||+|||..+++.+|+.+|++||.|.+|.|+++ ||||..++...|+.|++.|||..|.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999874 7999999999999999999999999999999988665
Q ss_pred CCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCC
Q 005812 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 376 (676)
..
T Consensus 75 sk------------------------------------------------------------------------------ 76 (346)
T KOG0109|consen 75 SK------------------------------------------------------------------------------ 76 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred ccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEE
Q 005812 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 456 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~ 456 (676)
.+.+|+|+||.+.++.+||+..|++||+|.+|.
T Consensus 77 -----------------------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecd 109 (346)
T KOG0109|consen 77 -----------------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECD 109 (346)
T ss_pred -----------------------------------------------CccccccCCCCccccCHHHhhhhcccCCceeee
Confidence 136899999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 457 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 457 i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
|+ ++|+||.|+-.++|..|++.|+ +..|.|++++|+.+-++-
T Consensus 110 iv--------kdy~fvh~d~~eda~~air~l~-----~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 110 IV--------KDYAFVHFDRAEDAVEAIRGLD-----NTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ee--------cceeEEEEeeccchHHHHhccc-----ccccccceeeeeeecccc
Confidence 87 4599999999999999999999 999999999999987654
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.76 E-value=2e-18 Score=172.92 Aligned_cols=176 Identities=25% Similarity=0.457 Sum_probs=154.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
..++|||++|++.++++.|+.+|..||.|.+|.+++++.+++++||+||+|.+++...++|.. ....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999984 6777999999999887
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
++.......
T Consensus 84 ~r~~~~~~~----------------------------------------------------------------------- 92 (311)
T KOG4205|consen 84 SREDQTKVG----------------------------------------------------------------------- 92 (311)
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 764311000
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
.......|||++||.++++++++++|.+||.|..
T Consensus 93 ----------------------------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~ 126 (311)
T KOG4205|consen 93 ----------------------------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVAD 126 (311)
T ss_pred ----------------------------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEe
Confidence 0002468999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhh
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAH 514 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~ 514 (676)
+.++.|..+.+++||+||.|.+.+.+.+++.. . -..|.|+.+.|..|.+++...
T Consensus 127 ~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~-----f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 127 VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-K-----FHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eEEeecccccccccceeeEeccccccceeccc-c-----eeeecCceeeEeeccchhhcc
Confidence 99999999999999999999999999888754 4 689999999999999986443
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.8e-18 Score=159.49 Aligned_cols=169 Identities=24% Similarity=0.358 Sum_probs=144.9
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCe-e
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE-I 197 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~-~ 197 (676)
...|.|||+-|...-.|+|++.+|..||.|.+|.+..- .+|.++|+|||.|.+.-+|..|+..|+|.. +
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg----------~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTm 86 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG----------PDGNSKGCAFVKFSSHAEAQAAINALHGSQTM 86 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC----------CCCCCCCceEEEeccchHHHHHHHHhcccccC
Confidence 35678999999999999999999999999999998754 469999999999999999999999999853 2
Q ss_pred cCe--EEEEe----------------------------------------------------------------------
Q 005812 198 KGG--TVWAR---------------------------------------------------------------------- 205 (676)
Q Consensus 198 ~~~--~i~v~---------------------------------------------------------------------- 205 (676)
.|- .+-|+
T Consensus 87 pGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~ 166 (371)
T KOG0146|consen 87 PGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQM 166 (371)
T ss_pred CCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHH
Confidence 232 11110
Q ss_pred --------------c--------------------------------------------------CC-------------
Q 005812 206 --------------Q--------------------------------------------------LG------------- 208 (676)
Q Consensus 206 --------------~--------------------------------------------------~~------------- 208 (676)
+ +.
T Consensus 167 aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a 246 (371)
T KOG0146|consen 167 AALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQA 246 (371)
T ss_pred HHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhh
Confidence 0 00
Q ss_pred -------------------------------CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCc
Q 005812 209 -------------------------------GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLS 257 (676)
Q Consensus 209 -------------------------------~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~ 257 (676)
......+.|.|||-.||....+.+|...|-+||.|.+.++..|+.++.+
T Consensus 247 ~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQS 326 (371)
T KOG0146|consen 247 YAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQS 326 (371)
T ss_pred hhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccc
Confidence 0011346799999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 005812 258 KGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 258 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~ 297 (676)
++|+||.|.++.+|+.||..|||..|+-++|+|.+..|++
T Consensus 327 KCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 327 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred cceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 9999999999999999999999999999999999887775
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.74 E-value=4.4e-18 Score=170.46 Aligned_cols=170 Identities=19% Similarity=0.310 Sum_probs=147.6
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecC
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~ 199 (676)
..+.|||++|+|+++++.|++.|.+||+|.+|.++.|+. .++++||+||.|.+++....++. .....|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~---------t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dg 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPS---------TGRSRGFGFVTFATPEGVDAVLN-ARTHKLDG 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCC---------CCCcccccceecCCCcchheeec-ccccccCC
Confidence 456899999999999999999999999999999999875 39999999999999999999877 34556777
Q ss_pred eEEEEecCCCCC------CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHH
Q 005812 200 GTVWARQLGGEG------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273 (676)
Q Consensus 200 ~~i~v~~~~~~~------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 273 (676)
+.|.+...-... .......|||++||.++++++++++|.+||.|..+.++.|..+.+++||+||.|.+++.+.+
T Consensus 75 r~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 75 RSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 777654322111 12235699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEecCCCCCC
Q 005812 274 AIQKFNGQKFGKRPIAVDWAVPKNIYS 300 (676)
Q Consensus 274 A~~~l~~~~~~g~~i~v~~a~~~~~~~ 300 (676)
++.. ..+.|.|+.+.|..|.|+....
T Consensus 155 v~~~-~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 155 VTLQ-KFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eccc-ceeeecCceeeEeeccchhhcc
Confidence 9994 8899999999999999987544
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.74 E-value=7.8e-16 Score=150.61 Aligned_cols=328 Identities=14% Similarity=0.154 Sum_probs=222.2
Q ss_pred ccceEEEEecCHHHHHHHHHH--hCCceecCeEEEEeeccccchHHHhhhhhchhhhhhhhhhccCCCCCcccccccccc
Q 005812 10 HRGFGYVQFAVMEDANRAVEM--KNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSS 87 (676)
Q Consensus 10 s~G~afV~F~~~edA~~Al~~--~~g~~i~gr~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (676)
.+..|.|+|++.+.|.+++.. -+...+.|+.-.+.+++++.-
T Consensus 66 ~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i------------------------------------ 109 (494)
T KOG1456|consen 66 HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCI------------------------------------ 109 (494)
T ss_pred ccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhh------------------------------------
Confidence 456899999999999999876 344467777777766643310
Q ss_pred hhhccCCCCCCCcccccCcccCCCCccchhcccCcEEE--EcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhccc
Q 005812 88 KLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVI--IGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGL 165 (676)
Q Consensus 88 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~--V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~ 165 (676)
.|+. .+.. ..+..|. |-|--+.+|.+-|+.+...+|.|..|.|+.
T Consensus 110 ----------~R~g-------~es~------~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk---------- 156 (494)
T KOG1456|consen 110 ----------ERPG-------DESA------TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK---------- 156 (494)
T ss_pred ----------ccCC-------CCCC------CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe----------
Confidence 0000 0000 1122333 445556899999999999999999999873
Q ss_pred ccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEe------------c---------------------------
Q 005812 166 AQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWAR------------Q--------------------------- 206 (676)
Q Consensus 166 ~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~------------~--------------------------- 206 (676)
++-=.|.|+|++.+.|++|.+.|||..|....+.+. .
T Consensus 157 ----kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~ 232 (494)
T KOG1456|consen 157 ----KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQ 232 (494)
T ss_pred ----ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccc
Confidence 222349999999999999999999999886644321 0
Q ss_pred -C-----------C---------------------------------CCCCCCCCcEEEEcCCCCC-CCHHHHHHhhccC
Q 005812 207 -L-----------G---------------------------------GEGSKTQKWKLIIRNIPFK-AKVNEIKDMFSPV 240 (676)
Q Consensus 207 -~-----------~---------------------------------~~~~~~~~~~v~V~nLp~~-~~e~~l~~~F~~~ 240 (676)
. . .+....+.+.++|-+|... ++-+.|..+|-.|
T Consensus 233 ~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY 312 (494)
T KOG1456|consen 233 RQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY 312 (494)
T ss_pred cCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc
Confidence 0 0 0011234688999999875 7789999999999
Q ss_pred CceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCC
Q 005812 241 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGS 320 (676)
Q Consensus 241 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (676)
|.|++|++++. ..|-|.|++.+..+.++|+..||+..+.|.+|.|.+++..-.... + ..
T Consensus 313 GNV~rvkFmkT-----k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~--~--------------pf 371 (494)
T KOG1456|consen 313 GNVERVKFMKT-----KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPV--Q--------------PF 371 (494)
T ss_pred CceeeEEEeec-----ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccC--C--------------ce
Confidence 99999999986 347799999999999999999999999999999998854322110 0 00
Q ss_pred CCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccc
Q 005812 321 DDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVS 400 (676)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (676)
..++.....+. =..+.+..|.+..++.+
T Consensus 372 lLpDgSpSfKd----------ys~SkNnRFssp~qAsK------------------------------------------ 399 (494)
T KOG1456|consen 372 LLPDGSPSFKD----------YSGSKNNRFSSPEQASK------------------------------------------ 399 (494)
T ss_pred ecCCCCcchhh----------cccccccccCChhHhhc------------------------------------------
Confidence 00000000000 00111122222211111
Q ss_pred cccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCc-eeEEEEeecCCCCCcceEEEEEeCCHHH
Q 005812 401 DVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVLHQVTKRPKGTGFLKFKTVEA 479 (676)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~F~t~~~ 479 (676)
.+-..++++|+.-|.|..+||+.|..+|...+. -.+|+|+.-+ +.+ ...+.++|++.++
T Consensus 400 ------------------NrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-ser-SssGllEfe~~s~ 459 (494)
T KOG1456|consen 400 ------------------NRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SER-SSSGLLEFENKSD 459 (494)
T ss_pred ------------------ccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-ccc-cccceeeeehHHH
Confidence 112345689999999999999999999997653 4566776554 332 4568899999999
Q ss_pred HHHHHHHcCCCCCCCeeecCc----EEEEEEcc
Q 005812 480 ATAAVSASKTTSGLGIFLKGR----QLTVLKAL 508 (676)
Q Consensus 480 A~~Al~~l~~~~~~g~~l~gr----~l~v~~a~ 508 (676)
|..||..+| ...+.+. +..+.|+.
T Consensus 460 Aveal~~~N-----H~pi~~p~gs~PfilKlcf 487 (494)
T KOG1456|consen 460 AVEALMKLN-----HYPIEGPNGSFPFILKLCF 487 (494)
T ss_pred HHHHHHHhc-----cccccCCCCCCCeeeeeee
Confidence 999999999 8888753 44444443
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=7e-16 Score=143.06 Aligned_cols=209 Identities=21% Similarity=0.282 Sum_probs=148.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHH----hhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKD----MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~----~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
.++.+|||.||+..+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|..|+..|+|..|-|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999888 999999999988876 567899999999999999999999999999999999
Q ss_pred EEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCC
Q 005812 290 VDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 369 (676)
Q Consensus 290 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 369 (676)
|+||..+.+........-..+.......+. ..... ....+..+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~----------~~~~~--------~~~~ng~~------------------- 126 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEIL----------ARIKQ--------PLDTNGHF------------------- 126 (221)
T ss_pred eecccCccchhhccCceeccccCccccccc----------cccCC--------cccccccc-------------------
Confidence 999987765443322110000000000000 00000 00000000
Q ss_pred CCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhC
Q 005812 370 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 449 (676)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~ 449 (676)
.+...+..+.+.. .....++..||+.|||..++.+.+..+|.+|
T Consensus 127 -----------------------------------~~~~~~~~p~p~~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf 170 (221)
T KOG4206|consen 127 -----------------------------------YNMNRMNLPPPFL-AQMAPPNNILFLTNIPSESESEMLSDLFEQF 170 (221)
T ss_pred -----------------------------------cccccccCCCCcc-ccCCCCceEEEEecCCcchhHHHHHHHHhhC
Confidence 0000000011111 2245567899999999999999999999999
Q ss_pred CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec-CcEEEEEEcc
Q 005812 450 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKAL 508 (676)
Q Consensus 450 G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~-gr~l~v~~a~ 508 (676)
.....++++.. ..+.|||+|.+...|..|...+. ++.+- .+.+.|.++.
T Consensus 171 ~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq-----~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 171 PGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQ-----GFKITKKNTMQITFAK 220 (221)
T ss_pred cccceeEeccC-----CCceeEEecchhhhhHHHhhhhc-----cceeccCceEEecccC
Confidence 99999987654 37899999999999999999999 88887 8888888764
No 52
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.2e-16 Score=167.51 Aligned_cols=301 Identities=20% Similarity=0.316 Sum_probs=205.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccC-----------Cc-eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPV-----------GL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~-----------G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 280 (676)
......++|+++|..++++....+|..- |+ +..+.+.. .+.|||++|.+.++|..|+. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhc-ccc
Confidence 3456899999999999999999998753 22 55555544 56799999999999999998 689
Q ss_pred ceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHH
Q 005812 281 QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKV 360 (676)
Q Consensus 281 ~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (676)
..+.|..+++..-............
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~------------------------------------------------------- 269 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLS------------------------------------------------------- 269 (500)
T ss_pred hhhCCCCceecccccccCCccchhh-------------------------------------------------------
Confidence 9999998887532211100000000
Q ss_pred hhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHH
Q 005812 361 LNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNE 440 (676)
Q Consensus 361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~tee 440 (676)
....+... .... ........+.+||.+||..+++.
T Consensus 270 ----~~~~~~~~---~~~~--------------------------------------~t~~~~~~~ki~v~~lp~~l~~~ 304 (500)
T KOG0120|consen 270 ----PSQLGKVG---LLPA--------------------------------------STDVPDSPNKIFVGGLPLYLTED 304 (500)
T ss_pred ----hccccccC---Cccc--------------------------------------ccCcccccchhhhccCcCccCHH
Confidence 00000000 0000 00011224689999999999999
Q ss_pred HHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhhh
Q 005812 441 EVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDK 520 (676)
Q Consensus 441 dl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~ 520 (676)
.++++...||.+....++.+..+|.++||||.+|-++.....|++.|| |..++++.|.|..|..-.....
T Consensus 305 q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn-----Gm~lgd~~lvvq~A~~g~~~~~----- 374 (500)
T KOG0120|consen 305 QVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN-----GMQLGDKKLVVQRAIVGASNAN----- 374 (500)
T ss_pred HHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccc-----hhhhcCceeEeehhhccchhcc-----
Confidence 999999999999999999999999999999999999999999999999 9999999999999875321110
Q ss_pred hcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecC--CcccCHHHHHHHH
Q 005812 521 SKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL--PKSMTEKGLKKLC 598 (676)
Q Consensus 521 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nl--p~~~te~~l~~~F 598 (676)
.+.++. . .+ ..+. ..+.-+....+...|.+.|+ |..+..++-.+-+
T Consensus 375 ------~~~~~~--~-~~-~~~i----------------------~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeI 422 (500)
T KOG0120|consen 375 ------VNFNIS--Q-SQ-VPGI----------------------PLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEI 422 (500)
T ss_pred ------ccCCcc--c-cc-cccc----------------------hhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHH
Confidence 000000 0 00 0000 00000111224456777777 5555554444445
Q ss_pred HHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCCCCcccCcccc
Q 005812 599 IDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSKLFYHHCFDAA 670 (676)
Q Consensus 599 ~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~~~~~~~~~~~ 670 (676)
-+.|+-+|. .||.|.+|.|+++.... ......|-.||+|.+.++|++|+.+|+|. .|+ .|.+|+
T Consensus 423 lEdvr~ec~-k~g~v~~v~ipr~~~~~---~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~--nRtVvt 486 (500)
T KOG0120|consen 423 LEDVRTECA-KFGAVRSVEIPRPYPDE---NPVPGTGKVFVEFADTEDSQRAMEELTGR--KFA--NRTVVA 486 (500)
T ss_pred HHHHHHHhc-ccCceeEEecCCCCCCC---CcCCCcccEEEEecChHHHHHHHHHccCc--eeC--CcEEEE
Confidence 556777787 59999999999883221 22355788899999999999999999998 343 566654
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1e-16 Score=168.18 Aligned_cols=274 Identities=20% Similarity=0.265 Sum_probs=205.2
Q ss_pred chhcccCcEEEEcCCCccccHHHHHHHhhcC-----------C-CeEEEEeeCCchhhhhcccccCCCccceEEEEeCCH
Q 005812 115 SQKQRVARTVIIGGLLNADMAEEVHRLAGSI-----------G-TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTV 182 (676)
Q Consensus 115 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~-----------G-~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~ 182 (676)
......++.++|+++|..+.++.+..+|..- | .+..+.+ .....+||++|.+.
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~---------------n~~~nfa~ie~~s~ 233 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL---------------NLEKNFAFIEFRSI 233 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee---------------cccccceeEEecCC
Confidence 4455678899999999999999999998854 2 2444442 34567899999999
Q ss_pred HHHHHHHHHhCCCeecCeEEEEecCCC-----------------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcc
Q 005812 183 KSACASVALLHQKEIKGGTVWARQLGG-----------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239 (676)
Q Consensus 183 ~~A~~A~~~l~~~~~~~~~i~v~~~~~-----------------------~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~ 239 (676)
++|..|+. +++..+.|..+.+..... .......+.+||++||...++.++.++...
T Consensus 234 ~~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~ 312 (500)
T KOG0120|consen 234 SEATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS 312 (500)
T ss_pred Cchhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh
Confidence 99999987 788888888776643211 112334689999999999999999999999
Q ss_pred CCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCC
Q 005812 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSG 319 (676)
Q Consensus 240 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (676)
||.+....++.+..+|.++||||.+|.++.-...|+..|||..+++..|.|..+.+.......... ..+
T Consensus 313 fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~---------~~~-- 381 (500)
T KOG0120|consen 313 FGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN---------ISQ-- 381 (500)
T ss_pred cccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC---------ccc--
Confidence 999999999999988999999999999999999999999999999999999988665421111000 000
Q ss_pred CCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhcccccc
Q 005812 320 SDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKV 399 (676)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (676)
. ....+.
T Consensus 382 --------------------------------~----~~~~i~------------------------------------- 388 (500)
T KOG0120|consen 382 --------------------------------S----QVPGIP------------------------------------- 388 (500)
T ss_pred --------------------------------c----ccccch-------------------------------------
Confidence 0 000000
Q ss_pred ccccccCCCCCCCCCCCcccCCCCCCCeEEEcCC--CCCC-C-------HHHHHHHHHhCCceeEEEEeecC---CCCCc
Q 005812 400 SDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNL--PFDL-D-------NEEVKQRFSAFGEVVSFVPVLHQ---VTKRP 466 (676)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL--p~~~-t-------eedl~~~F~~~G~v~~v~i~~~~---~~~~~ 466 (676)
.........+...|.+.|+ |.+. . -|+|+.-|++||.|.+|.|.++. .....
T Consensus 389 ---------------~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G 453 (500)
T KOG0120|consen 389 ---------------LLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPG 453 (500)
T ss_pred ---------------hhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCC
Confidence 0000113334567777776 1111 1 25667788899999999888762 23345
Q ss_pred ceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEcc
Q 005812 467 KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (676)
Q Consensus 467 ~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~ 508 (676)
.|..||+|.+.+++++|+++|+ |..|.||+|...|..
T Consensus 454 ~GkVFVefas~ed~qrA~~~L~-----GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 454 TGKVFVEFADTEDSQRAMEELT-----GRKFANRTVVASYYD 490 (500)
T ss_pred cccEEEEecChHHHHHHHHHcc-----CceeCCcEEEEEecC
Confidence 7889999999999999999999 999999999999864
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.67 E-value=2.4e-15 Score=139.56 Aligned_cols=202 Identities=25% Similarity=0.326 Sum_probs=138.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 424 LQNTIFICNLPFDLDNEEVKQ----RFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~----~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
++.+|||.||+..+..++|+. +|++||.|..|... .+.+.+|.|||.|++.+.|..|+..|+ |+.+.|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~-----gfpFyg 79 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQ-----GFPFYG 79 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhc-----CCcccC
Confidence 345999999999999999988 99999999998654 356789999999999999999999999 999999
Q ss_pred cEEEEEEccCchhhhhHhhhhhcccccccCcc-cccccCcc--cCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCC---c
Q 005812 500 RQLTVLKALDKKLAHDKEIDKSKNETNDHRNL-YLAKEGLI--LEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPN---F 573 (676)
Q Consensus 500 r~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~ 573 (676)
++++|.||.++..--.+..-. -.......+. .+...+.. ..+.+.. +. ...++.|. .
T Consensus 80 K~mriqyA~s~sdii~~~~~~-~v~~~~k~~~~~~~~~~~~~~~ng~~~~--~~--------------~~~~p~p~~~~~ 142 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQAPGT-FVEKEKKINGEILARIKQPLDTNGHFYN--MN--------------RMNLPPPFLAQM 142 (221)
T ss_pred chhheecccCccchhhccCce-eccccCccccccccccCCcccccccccc--cc--------------cccCCCCccccC
Confidence 999999999876433221100 0000000000 00000000 0000000 00 00000110 1
Q ss_pred cccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHH
Q 005812 574 HVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRV 653 (676)
Q Consensus 574 ~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~ 653 (676)
..+...|++.|||..++.+.+..+|. +|+..+.|+++.. -+|.|||+|.+...|..|+.+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~---------qf~g~keir~i~~-----------~~~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFE---------QFPGFKEIRLIPP-----------RSGIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHh---------hCcccceeEeccC-----------CCceeEEecchhhhhHHHhhh
Confidence 12346799999999999999999999 6999999998843 479999999999999999999
Q ss_pred HcCCCCCCCcccCcccccc
Q 005812 654 LNNNPSKLFYHHCFDAADA 672 (676)
Q Consensus 654 lng~~~~~~~~~~~~~~~~ 672 (676)
|.|...- +..-..|++|
T Consensus 203 lq~~~it--~~~~m~i~~a 219 (221)
T KOG4206|consen 203 LQGFKIT--KKNTMQITFA 219 (221)
T ss_pred hccceec--cCceEEeccc
Confidence 9995432 2344444444
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=2e-15 Score=134.00 Aligned_cols=154 Identities=17% Similarity=0.248 Sum_probs=131.2
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
+..++|||+|||.++-+.+|.++|.+||.|..|.|.. .....+||||+|+++.+|+.|+..-+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~------------r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN------------RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc------------CCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 4568999999999999999999999999999999642 2344689999999999999999999999999
Q ss_pred CeEEEEecCCC--------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccC
Q 005812 199 GGTVWARQLGG--------------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (676)
Q Consensus 199 ~~~i~v~~~~~--------------------------~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~ 252 (676)
|..|+|..... +....+...|.|++||...+.++|+.++.+-|.|....+.++
T Consensus 72 g~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD- 150 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD- 150 (241)
T ss_pred cceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-
Confidence 99999864321 233456789999999999999999999999999998888876
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceeC--CeeEEEE
Q 005812 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG--KRPIAVD 291 (676)
Q Consensus 253 ~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~i~v~ 291 (676)
|++.|+|...++-+-|+.+|..+.+. |-...+.
T Consensus 151 ------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 151 ------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred ------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 57999999999999999999888763 4444443
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=2.2e-15 Score=136.52 Aligned_cols=83 Identities=34% Similarity=0.572 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
.+++|||+|||+.+++++|+++|++||.|.++.|+.+..++.++|||||+|.+.++|+.|++.|| +..|+|+.|.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln-----g~~i~Gr~l~ 107 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD-----GKELNGRHIR 107 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCch
Q 005812 504 VLKALDKK 511 (676)
Q Consensus 504 v~~a~~k~ 511 (676)
|.++..+.
T Consensus 108 V~~a~~~~ 115 (144)
T PLN03134 108 VNPANDRP 115 (144)
T ss_pred EEeCCcCC
Confidence 99987654
No 57
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.63 E-value=1.7e-15 Score=148.64 Aligned_cols=288 Identities=18% Similarity=0.229 Sum_probs=186.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
...+..|..++||+..++.+|..+|...-.....+.......|+..|.|.|.|.+.+.-..|++. +...+.++.|.|..
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 34456777889999999999999998643222222222333577889999999999999999996 88888999999976
Q ss_pred ecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCC
Q 005812 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (676)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 372 (676)
+....-..-... ...
T Consensus 136 a~ge~f~~iagg-----------------------------------------------------------------~s~ 150 (508)
T KOG1365|consen 136 ATGEEFLKIAGG-----------------------------------------------------------------TSN 150 (508)
T ss_pred cCchhheEecCC-----------------------------------------------------------------ccc
Confidence 654321110000 000
Q ss_pred CCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhC---
Q 005812 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF--- 449 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~--- 449 (676)
.. .........-.|.+++||+++++.||.++|...
T Consensus 151 ------------------------------------e~------~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv 188 (508)
T KOG1365|consen 151 ------------------------------------EA------APFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPV 188 (508)
T ss_pred ------------------------------------cC------CCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcc
Confidence 00 000000112478899999999999999999632
Q ss_pred -CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhhhhccccccc
Q 005812 450 -GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDH 528 (676)
Q Consensus 450 -G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~ 528 (676)
|.++.|.++.. .+|+.+|-|||.|..+++|+.||.+. .-.|+-|.|.+..+-..+-.+......
T Consensus 189 ~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~kh------rq~iGqRYIElFRSTaaEvqqvlnr~~-------- 253 (508)
T KOG1365|consen 189 TGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKH------RQNIGQRYIELFRSTAAEVQQVLNREV-------- 253 (508)
T ss_pred cCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHH------HHHHhHHHHHHHHHhHHHHHHHHHhhc--------
Confidence 34556644444 46899999999999999999999874 366777788775532221111111000
Q ss_pred CcccccccCcccC-CCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecCCcccCHHHHHHHHHHHHHhhhc
Q 005812 529 RNLYLAKEGLILE-GTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRAS 607 (676)
Q Consensus 529 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~ 607 (676)
.++.+.. ++|...++ +. .+-.+ ..++.+|.+|+||+.+|.++|..||.++...+--
T Consensus 254 ------s~pLi~~~~sp~~p~~-p~--------------~~~p~--~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f 310 (508)
T KOG1365|consen 254 ------SEPLIPGLTSPLLPGG-PA--------------RLVPP--TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRF 310 (508)
T ss_pred ------cccccCCCCCCCCCCC-cc--------------ccCCC--CCCCCeeEecCCChhhhHHHHHHHHHHHhhhccc
Confidence 0011110 11110000 00 00001 1135789999999999999999999987544311
Q ss_pred ccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCC
Q 005812 608 KQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPS 659 (676)
Q Consensus 608 ~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~ 659 (676)
.-|++..+ .+|+..|.|||+|.+.+.|..|+...+++.+
T Consensus 311 ------~gVHmv~N-------~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 311 ------QGVHMVLN-------GQGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred ------ceeEEEEc-------CCCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 12555554 4689999999999999999999999887643
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=5.2e-15 Score=134.10 Aligned_cols=85 Identities=27% Similarity=0.439 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||+.+++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|+.|++.|++..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 005812 293 AVPKN 297 (676)
Q Consensus 293 a~~~~ 297 (676)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97654
No 59
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2e-14 Score=127.61 Aligned_cols=170 Identities=22% Similarity=0.286 Sum_probs=127.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||.++-+.||.++|-+||.|..|.+-.. -...+||||+|+++.+|..|+..-+ |.-++|+.|.|
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRd-----GYdydg~rLRV 77 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRD-----GYDYDGCRLRV 77 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhccc-----ccccCcceEEE
Confidence 589999999999999999999999999999876433 2357899999999999999999999 99999999999
Q ss_pred EEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEec
Q 005812 505 LKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYN 584 (676)
Q Consensus 505 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~n 584 (676)
.++..-.... +.+..|.-... .+... . .-..|....+..+|.|.+
T Consensus 78 Efprggr~s~------------~~~G~y~gggr---gGgg~---g-----------------g~rgppsrrSe~RVvVsG 122 (241)
T KOG0105|consen 78 EFPRGGRSSS------------DRRGSYSGGGR---GGGGG---G-----------------GRRGPPSRRSEYRVVVSG 122 (241)
T ss_pred EeccCCCccc------------ccccccCCCCC---CCCCC---C-----------------cccCCcccccceeEEEec
Confidence 9976532111 11111100000 00000 0 001122222446899999
Q ss_pred CCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCC
Q 005812 585 LPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPS 659 (676)
Q Consensus 585 lp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~ 659 (676)
||.+.+.++|++...+ -|.|-...+.+| |++.|+|...|+-.-|++.|.....
T Consensus 123 Lp~SgSWQDLKDHmRe---------aGdvCfadv~rD-------------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 123 LPPSGSWQDLKDHMRE---------AGDVCFADVQRD-------------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred CCCCCchHHHHHHHHh---------hCCeeeeeeecc-------------cceeeeeeehhhHHHHHHhhccccc
Confidence 9999999999999996 577766666655 7999999999999999999987644
No 60
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.60 E-value=2.1e-14 Score=141.07 Aligned_cols=280 Identities=22% Similarity=0.313 Sum_probs=190.0
Q ss_pred cEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeE
Q 005812 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (676)
Q Consensus 122 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~ 201 (676)
.-|...+|||..+..+|-.+|...-...--+.. . ++-.|+..|.|.|+|.+.|.-..|++. +..-+.++.
T Consensus 61 vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aK-O--------G~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ry 130 (508)
T KOG1365|consen 61 VVVRARGLPWQSSDQDIARFFKGLNIANGGRAL-C--------LNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRY 130 (508)
T ss_pred eEEEecCCCCCcccCCHHHHHhhhhccccceee-e--------ehhhhccccceEEEecCchhhhhhhHh-hhhhccCCc
Confidence 346678999999999999999854211111100 0 123477788999999999999999884 555666676
Q ss_pred EEEecCCCC----------------CCCCCCcEEEEcCCCCCCCHHHHHHhhcc---C-CceEEEEEcccCCCCCceeEE
Q 005812 202 VWARQLGGE----------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSP---V-GLVWNVYIPHNTDTGLSKGFA 261 (676)
Q Consensus 202 i~v~~~~~~----------------~~~~~~~~v~V~nLp~~~~e~~l~~~F~~---~-G~i~~v~i~~~~~~~~~~g~a 261 (676)
|.+-...+. .++...-.|.+++||+++++.|+.++|.+ . |..+.|.++..+ +|+..|-|
T Consensus 131 ievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdA 209 (508)
T KOG1365|consen 131 IEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDA 209 (508)
T ss_pred eeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccce
Confidence 665332211 11223456778899999999999999963 2 345566666653 78899999
Q ss_pred EEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccc
Q 005812 262 FVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEK 341 (676)
Q Consensus 262 fV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (676)
||.|..+++|+.||.+ |...++-|-|.+-.+.
T Consensus 210 Fvlfa~ee~aq~aL~k-hrq~iGqRYIElFRST----------------------------------------------- 241 (508)
T KOG1365|consen 210 FVLFACEEDAQFALRK-HRQNIGQRYIELFRST----------------------------------------------- 241 (508)
T ss_pred EEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHh-----------------------------------------------
Confidence 9999999999999997 7777777767664432
Q ss_pred cCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCC
Q 005812 342 EDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGE 421 (676)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (676)
....++.+++.... +-++..... ..+.+ ++.-...
T Consensus 242 ------------aaEvqqvlnr~~s~-pLi~~~~sp-~~p~~-------------------------------p~~~~p~ 276 (508)
T KOG1365|consen 242 ------------AAEVQQVLNREVSE-PLIPGLTSP-LLPGG-------------------------------PARLVPP 276 (508)
T ss_pred ------------HHHHHHHHHhhccc-cccCCCCCC-CCCCC-------------------------------ccccCCC
Confidence 22334444433211 000000000 00000 0000011
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCc-eeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVS--FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~-v~~--v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~ 498 (676)
.....+|.+++||+..+.|||.++|..|-. |.. |.++.+ .-|++.|-|||+|.+.++|..|....+ ...+.
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~h-----k~~mk 350 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCH-----KKLMK 350 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHH-----Hhhcc
Confidence 222469999999999999999999999863 444 555555 458999999999999999999999998 77778
Q ss_pred CcEEEEEEccCch
Q 005812 499 GRQLTVLKALDKK 511 (676)
Q Consensus 499 gr~l~v~~a~~k~ 511 (676)
+|.|.|..+.-.+
T Consensus 351 ~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 351 SRYIEVFPCSVEE 363 (508)
T ss_pred cceEEEeeccHHH
Confidence 9999998876543
No 61
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.58 E-value=7.8e-14 Score=127.70 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEccc-CCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCeeEEE
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRPIAV 290 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~i~v 290 (676)
.-++|||.+||.++...+|..+|..|-..+.+.+... +.....+-+|||.|.+..+|..|++.|||..| .+..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999999877777766442 22233557999999999999999999999999 5889999
Q ss_pred EEecCCCC
Q 005812 291 DWAVPKNI 298 (676)
Q Consensus 291 ~~a~~~~~ 298 (676)
++++....
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99876543
No 62
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.57 E-value=9.6e-14 Score=127.10 Aligned_cols=212 Identities=23% Similarity=0.247 Sum_probs=131.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEee-cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec---Cc
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVL-HQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK---GR 500 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~-~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~---gr 500 (676)
-++|||.+||.++-..+|..+|..|-..+.+.+-. ++.....+-+|||+|.+..+|..|+.+|| |..|+ +.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN-----GvrFDpE~~s 108 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALN-----GVRFDPETGS 108 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhc-----CeeeccccCc
Confidence 58999999999999999999999997777765433 33344556899999999999999999999 99997 78
Q ss_pred EEEEEEccCchhhhhHhhhhhcc----cccccCcccc-------cccCcc----cCCCCCCCCCChhH-------HHHHH
Q 005812 501 QLTVLKALDKKLAHDKEIDKSKN----ETNDHRNLYL-------AKEGLI----LEGTPAAEGVSDDD-------MSKRQ 558 (676)
Q Consensus 501 ~l~v~~a~~k~~~~~~~~~~~~~----~~~~~~~~~~-------~~~g~~----~~~~~~~~~~~~~~-------~~~~~ 558 (676)
.|+|++|+++....+...-.... -..+.++... ..++.. ....-.+..+.+.+ .+...
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 99999998865433221111000 0000000000 000000 00000001111111 11110
Q ss_pred HHHH--HHhhcCCC-CCccccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcce
Q 005812 559 MLHE--KKMTKLQS-PNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRG 635 (676)
Q Consensus 559 ~~~~--~~~~~~~~-p~~~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g 635 (676)
+... ...++.+. -.......+|||-||...+||++|+.+|+. |.....++|.-. ....
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~---------~~gf~~l~~~~~----------~g~~ 249 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR---------YPGFHILKIRAR----------GGMP 249 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh---------CCCceEEEEecC----------CCcc
Confidence 0000 00011100 011123357999999999999999999995 777666666421 2356
Q ss_pred EEEEEeCChHHHHHHHHHHcCCCCC
Q 005812 636 VAFVEFTEHQHALVALRVLNNNPSK 660 (676)
Q Consensus 636 ~afV~F~~~~~A~~Ai~~lng~~~~ 660 (676)
.|||+|.+.+.|..||..|+|+-+.
T Consensus 250 vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 250 VAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred eEeecHHHHHHHHHHHHHhhcceec
Confidence 8999999999999999999998654
No 63
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.53 E-value=3.2e-13 Score=131.83 Aligned_cols=199 Identities=20% Similarity=0.331 Sum_probs=140.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceE--------EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 285 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 285 (676)
..+..|||.|||.++|.+++.++|+++|.|. .|++-++. .|+.+|=|++.|-..++...|++.|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3467799999999999999999999999875 36777764 59999999999999999999999999999999
Q ss_pred eeEEEEEecCCCC--CCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhc
Q 005812 286 RPIAVDWAVPKNI--YSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK 363 (676)
Q Consensus 286 ~~i~v~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (676)
+.|+|+.|+-... +........ ............++.+..
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~--------------------------------------k~~~~kk~~k~q~k~~dw 252 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKG--------------------------------------KCKDKKKLKKQQQKLLDW 252 (382)
T ss_pred cEEEEehhhhhhccCcCccccccc--------------------------------------ccccHHHHHHHHHhhccc
Confidence 9999998753321 111111000 000000001111111111
Q ss_pred ccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCC----CCCC-
Q 005812 364 LTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP----FDLD- 438 (676)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp----~~~t- 438 (676)
... . .........++|.|+||= +..+
T Consensus 253 ~pd------------------------------------------~-------~~~sk~r~~~tVi~kn~Ftp~~~~~~~ 283 (382)
T KOG1548|consen 253 RPD------------------------------------------R-------DDPSKARADRTVILKNMFTPEDFEKNP 283 (382)
T ss_pred CCC------------------------------------------c-------cccccccCCcEEEeeecCCHHHhccCH
Confidence 000 0 000112234799999991 2223
Q ss_pred ------HHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccC
Q 005812 439 ------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (676)
Q Consensus 439 ------eedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~ 509 (676)
.++|++-+++||.|.+|.|. + ..+.|.+-|.|.+.++|..|++.|+ |..|+||.|+.+..--
T Consensus 284 ~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~-----GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 284 DLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMD-----GRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhc-----CeeecceEEEEEEeCC
Confidence 56777889999999999554 3 3568999999999999999999999 9999999999987543
No 64
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.52 E-value=7.2e-13 Score=139.48 Aligned_cols=161 Identities=14% Similarity=0.045 Sum_probs=116.6
Q ss_pred EEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCc-cceEEEEeCCHHHHHHHHHHhCCCeecCeE
Q 005812 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCK-MDASAVLYTTVKSACASVALLHQKEIKGGT 201 (676)
Q Consensus 123 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~-~g~afV~F~~~~~A~~A~~~l~~~~~~~~~ 201 (676)
.+-+.+.+...+..+++++|... .|..+.|..+ +-+.+ .|-+||.|....++++|+. -|...+-.+.
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~----------~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~ 380 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSEN----------RVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRP 380 (944)
T ss_pred eeeecccccccccchhhhhcCcc-cccccchhhh----------hcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcc
Confidence 45567888889999999998743 3333333222 22333 7889999999999999987 3555555565
Q ss_pred EEEecCC------------------------------------CC---CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCc
Q 005812 202 VWARQLG------------------------------------GE---GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL 242 (676)
Q Consensus 202 i~v~~~~------------------------------------~~---~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~ 242 (676)
+.+.+.. +. ........|||..||..+++.++..+|...-.
T Consensus 381 ~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~ 460 (944)
T KOG4307|consen 381 FQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA 460 (944)
T ss_pred eeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh
Confidence 5442110 00 01123579999999999999999999998777
Q ss_pred eEE-EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 243 VWN-VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 243 i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
|++ |.|.+.+ +++.++.|||.|..++++..|+..-+...++.+.|+|.-...+
T Consensus 461 Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 461 VEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred hhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 777 5555544 6778899999999999999998876777788899999865433
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.7e-14 Score=131.34 Aligned_cols=85 Identities=31% Similarity=0.663 Sum_probs=81.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
...+.++|-|.|||.+++|++|+++|.+||.|.+|.|.+++.+|.++|||||.|.+.++|.+||..|||.-+..-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q 005812 292 WAVPK 296 (676)
Q Consensus 292 ~a~~~ 296 (676)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99886
No 66
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.50 E-value=7.6e-13 Score=129.24 Aligned_cols=193 Identities=14% Similarity=0.225 Sum_probs=134.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 494 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g 494 (676)
..+..|||.|||.++|.+++.++|+++|.|.. |++.++. .|..+|-|+++|.-.++..-|++.|+ +
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilD-----e 205 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILD-----E 205 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhC-----c
Confidence 34567999999999999999999999998865 6777775 48999999999999999999999999 9
Q ss_pred eeecCcEEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHH----HhhcCCC
Q 005812 495 IFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEK----KMTKLQS 570 (676)
Q Consensus 495 ~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 570 (676)
..|.|+.|+|..|+=-.. ...... .-+ .....+..+....++. .+.. ..
T Consensus 206 ~~~rg~~~rVerAkfq~K-------ge~~~~----------------~k~---k~k~~~~kk~~k~q~k~~dw~pd~-~~ 258 (382)
T KOG1548|consen 206 DELRGKKLRVERAKFQMK-------GEYDAS----------------KKE---KGKCKDKKKLKKQQQKLLDWRPDR-DD 258 (382)
T ss_pred ccccCcEEEEehhhhhhc-------cCcCcc----------------ccc---ccccccHHHHHHHHHhhcccCCCc-cc
Confidence 999999999998763110 000000 000 0000111111111111 0111 11
Q ss_pred CCccccCCeEEEecC--CcccC-HHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHH
Q 005812 571 PNFHVSRTRLVIYNL--PKSMT-EKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHA 647 (676)
Q Consensus 571 p~~~~~~~~l~V~nl--p~~~t-e~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A 647 (676)
|......++|.++|+ |.... ..+|..-+.+.++.+|. .||.|.+|.+.-. .+.|.+.|.|.+.++|
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~-K~G~v~~vvv~d~----------hPdGvvtV~f~n~eeA 327 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECE-KFGQVRKVVVYDR----------HPDGVVTVSFRNNEEA 327 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHH-HhCCcceEEEecc----------CCCceeEEEeCChHHH
Confidence 333334578999999 55443 33555566666777787 5999999977532 4579999999999999
Q ss_pred HHHHHHHcCCCC
Q 005812 648 LVALRVLNNNPS 659 (676)
Q Consensus 648 ~~Ai~~lng~~~ 659 (676)
..+|+.|+|+..
T Consensus 328 ~~ciq~m~GR~f 339 (382)
T KOG1548|consen 328 DQCIQTMDGRWF 339 (382)
T ss_pred HHHHHHhcCeee
Confidence 999999999843
No 67
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.49 E-value=2e-13 Score=108.30 Aligned_cols=70 Identities=30% Similarity=0.572 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 428 l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
|||+|||..+++++|+++|+.||.|..+.++.+ .++.++++|||+|.+.++|.+|++.|+ |..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~-----g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELN-----GKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcC-----CCEECccCcC
Confidence 799999999999999999999999999999887 678899999999999999999999999 9999999985
No 68
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=6.5e-14 Score=131.72 Aligned_cols=166 Identities=23% Similarity=0.409 Sum_probs=130.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
..+||++||+.+.+.+|..+|..||.|..+.+.. ||+||+|.+.-+|..|+..|++..|+|-.+.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3699999999999999999999999999987743 78999999999999999999999999988999998654
Q ss_pred CCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCC
Q 005812 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 376 (676)
........
T Consensus 74 ~~~~g~~~------------------------------------------------------------------------ 81 (216)
T KOG0106|consen 74 RRGRGRPR------------------------------------------------------------------------ 81 (216)
T ss_pred ccccCCCC------------------------------------------------------------------------
Confidence 31110000
Q ss_pred ccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEE
Q 005812 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 456 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~ 456 (676)
+ ..+.. -...........+.++|.|++..+.+++|.++|+.+|.+.+..
T Consensus 82 ------~----------------------g~r~~---~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~ 130 (216)
T KOG0106|consen 82 ------G----------------------GDRRS---DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVD 130 (216)
T ss_pred ------C----------------------CCccc---hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhh
Confidence 0 00000 0000000122357899999999999999999999999996553
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEE
Q 005812 457 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (676)
Q Consensus 457 i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~ 506 (676)
+ ..+++||+|.+.++|.+|+..|+ +..+.|+.|.+..
T Consensus 131 ~--------~~~~~~v~Fs~~~da~ra~~~l~-----~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 131 A--------RRNFAFVEFSEQEDAKRALEKLD-----GKKLNGRRISVEK 167 (216)
T ss_pred h--------hccccceeehhhhhhhhcchhcc-----chhhcCceeeecc
Confidence 2 46789999999999999999999 9999999999944
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.1e-13 Score=127.00 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=79.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
..++|.|.||+.++++.+|+++|.+||.|..|+|.+|+.+|.++|||||.|.+.++|.+|+..|| |+-++.-.|.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln-----G~gyd~LILr 262 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN-----GYGYDNLILR 262 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc-----CcccceEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 005812 504 VLKALDK 510 (676)
Q Consensus 504 v~~a~~k 510 (676)
|.|+.|+
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999875
No 70
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=2.6e-13 Score=107.63 Aligned_cols=70 Identities=37% Similarity=0.668 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 219 v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
|||+|||.++++++|+++|+.||.|..+.+..+ .++..+|||||+|.+.++|..|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5788999999999999999999999999999999985
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.9e-13 Score=114.24 Aligned_cols=79 Identities=25% Similarity=0.550 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
.+++|||+||+..++|++|.++|++.|.|..|.+-.|+.+..+.|||||+|.+.++|..|++-++|+.++.++|+++|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 5679999999999999999999999999999999999989999999999999999999999999999999999999985
No 72
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=5.7e-13 Score=107.12 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
...++.|||+|||+++|.|+..++|.+||.|+.++|-..+ ..+|.|||.|++..+|.+|+.+|+ |..+.++.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhls-----g~n~~~ry 86 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLS-----GYNVDNRY 86 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhc-----ccccCCce
Confidence 3456899999999999999999999999999999885443 468999999999999999999999 99999999
Q ss_pred EEEEEccCchhhhhHhhh
Q 005812 502 LTVLKALDKKLAHDKEID 519 (676)
Q Consensus 502 l~v~~a~~k~~~~~~~~~ 519 (676)
|.|-+..+.+........
T Consensus 87 l~vlyyq~~~~~~~~~~~ 104 (124)
T KOG0114|consen 87 LVVLYYQPEDAFKLMDSR 104 (124)
T ss_pred EEEEecCHHHHHHHHHhH
Confidence 999999887765554433
No 73
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.41 E-value=2.3e-11 Score=128.30 Aligned_cols=163 Identities=10% Similarity=-0.007 Sum_probs=106.1
Q ss_pred cCCCCcccceEEEEecCHHHHHHHHHHhCCceecCeEEEEeeccccchHHHhhhhhchhhhhhhhhhccCC-CCCccccc
Q 005812 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDN-KDGVISGA 82 (676)
Q Consensus 4 ~~~tg~s~G~afV~F~~~edA~~Al~~~~g~~i~gr~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (676)
+..-+...|.+||.|....++++|++. |.+.+..|.+.|.+..... +........+..+ ..+.+ +..-++.
T Consensus 345 ~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~----~~~a~~~~~~~~~--~~~~~~hg~p~~~- 416 (944)
T KOG4307|consen 345 NRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLG----RNGAPPFQAGVPP--PVIQNNHGRPIAP- 416 (944)
T ss_pred hhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCccc----cccCccccccCCC--CcccccCCCCCCC-
Confidence 334455589999999999999999999 8899999999998875441 2111111111111 11111 1111110
Q ss_pred ccccchhhccCCCCCCCcccccCcccCCCCccchhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEE-EEeeCCchhhh
Q 005812 83 EKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCS-VTYPLPKEELE 161 (676)
Q Consensus 83 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~-v~~~~~~~~~~ 161 (676)
+|-....+..+.- ....+.+|||..||..+++.++.++|...-.|++ |.|..
T Consensus 417 ---------------pr~~~~~gq~vp~------P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~------ 469 (944)
T KOG4307|consen 417 ---------------PRAMVRPGQNVPF------PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR------ 469 (944)
T ss_pred ---------------cccccCCCCCCCC------CCCccceEEeccCCccccccchhhhhhhhhhhhheeEecc------
Confidence 1111111111111 2245779999999999999999999999888888 44432
Q ss_pred hcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEe
Q 005812 162 QHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWAR 205 (676)
Q Consensus 162 ~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~ 205 (676)
...++-++.|||.|..++++.+|...-+...++-+.|+|+
T Consensus 470 ----~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 470 ----LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred ----CCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 2457788999999999999999987656666666666654
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.41 E-value=1.4e-12 Score=103.49 Aligned_cols=70 Identities=29% Similarity=0.500 Sum_probs=64.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 428 l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
|||+|||+.+++++|+++|+.||.|..+.+..++. +.++|+|||+|.++++|.+|+..++ +..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~-----~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLN-----GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCC-----CcEECCEEcC
Confidence 79999999999999999999999999999998876 8899999999999999999999999 9999999884
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.39 E-value=2.6e-12 Score=101.92 Aligned_cols=70 Identities=34% Similarity=0.632 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 219 v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
|||+|||+++++++|+++|+.||.|..+.+..++. +..+|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999999999999874
No 76
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=8e-13 Score=110.55 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
+++|||+||.+-++||.|.++|+++|.|+.|..-.|+.+..+.|||||+|-+.++|..|++-++ ++.|+.++|.+
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis-----gtrLddr~ir~ 110 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS-----GTRLDDRPIRI 110 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc-----cCcccccceee
Confidence 6899999999999999999999999999998666788888899999999999999999999999 99999999999
Q ss_pred EEcc
Q 005812 505 LKAL 508 (676)
Q Consensus 505 ~~a~ 508 (676)
.|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 9954
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.2e-12 Score=126.84 Aligned_cols=102 Identities=28% Similarity=0.409 Sum_probs=87.8
Q ss_pred CCCeecCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHH
Q 005812 193 HQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272 (676)
Q Consensus 193 ~~~~~~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 272 (676)
++....|-.+..............++|+|.|||+...+-||+.+|.+||.|.+|.|+.+. .-+||||||+|++.+||+
T Consensus 73 ~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dad 150 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADAD 150 (376)
T ss_pred CCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHH
Confidence 444455556666555555566677899999999999999999999999999999999874 338999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEecCC
Q 005812 273 SAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 273 ~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
+|.++|||+.+.||+|.|..+.++
T Consensus 151 RARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 151 RARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHhhcceeeceEEEEeccchh
Confidence 999999999999999999998776
No 78
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=9.5e-13 Score=122.46 Aligned_cols=78 Identities=32% Similarity=0.520 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
+.|||+||++.+..++|+++|++||.|.++.|+.|+.+|+++|||||+|.+.++|.+|++..| -.|+||+-.|.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~------piIdGR~aNcn 86 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN------PIIDGRKANCN 86 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC------Ccccccccccc
Confidence 689999999999999999999999999999999999999999999999999999999998876 79999999988
Q ss_pred EccC
Q 005812 506 KALD 509 (676)
Q Consensus 506 ~a~~ 509 (676)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8654
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.3e-12 Score=123.13 Aligned_cols=145 Identities=28% Similarity=0.426 Sum_probs=124.0
Q ss_pred EEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 005812 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (676)
Q Consensus 123 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i 202 (676)
.+||++||+.+.+.+|..+|..||.+..+.+. .||+||+|.+..+|..|+..||+..|.|..+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----------------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~ 65 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-----------------NGFGFVEFEDPRDADDAVHDLDGKELCGERL 65 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-----------------cccceeccCchhhhhcccchhcCceecceee
Confidence 58999999999999999999999999988743 5789999999999999999999999999885
Q ss_pred EEecCCC------C--------------CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEE
Q 005812 203 WARQLGG------E--------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 262 (676)
Q Consensus 203 ~v~~~~~------~--------------~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~af 262 (676)
.+..... . ......+.++|.+++..+.+.+|..+|..+|.+....+ ..+++|
T Consensus 66 vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~ 137 (216)
T KOG0106|consen 66 VVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAF 137 (216)
T ss_pred eeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccc
Confidence 5432210 0 01234689999999999999999999999999965444 346799
Q ss_pred EEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 263 VKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 263 V~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
|+|++.++|..|+..|++..+.++.|.+..
T Consensus 138 v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 138 VEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred eeehhhhhhhhcchhccchhhcCceeeecc
Confidence 999999999999999999999999999943
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.7e-12 Score=133.42 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=113.5
Q ss_pred cchhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhC
Q 005812 114 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH 193 (676)
Q Consensus 114 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 193 (676)
++.+....++|+|-|||.++++++|+.+|+.||+|..|+ ..-..+|..||+|.+..+|+.|++.|+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir--------------~t~~~~~~~~v~FyDvR~A~~Alk~l~ 133 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR--------------ETPNKRGIVFVEFYDVRDAERALKALN 133 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh--------------cccccCceEEEEEeehHhHHHHHHHHH
Confidence 344456778999999999999999999999999999987 234557889999999999999999999
Q ss_pred CCeecCeEEEEecCCC-----------------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcc
Q 005812 194 QKEIKGGTVWARQLGG-----------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH 250 (676)
Q Consensus 194 ~~~~~~~~i~v~~~~~-----------------------~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~ 250 (676)
+..+.|+.+. ++... .........+ ++.|++.....-++..|..+|.+.. +..
T Consensus 134 ~~~~~~~~~k-~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~~- 209 (549)
T KOG4660|consen 134 RREIAGKRIK-RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RET- 209 (549)
T ss_pred HHHhhhhhhc-CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-ccc-
Confidence 9999998876 21110 0011112222 2338888887666777777887765 222
Q ss_pred cCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 005812 251 NTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 251 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~ 297 (676)
+.-.-.-|+.|.+..++..+.... |..+.+....+.++.+..
T Consensus 210 ----~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 210 ----PLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred ----cchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCCCc
Confidence 212224577888888876666543 666666666677766643
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=4.6e-12 Score=122.58 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ++|||||+|.++++|..|+. |+ |..|.|+.|.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-Ln-----G~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LS-----GATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hc-----CCeeCCceEEE
Confidence 47999999999999999999999999999999988753 57999999999999999994 99 99999999999
Q ss_pred EEccC
Q 005812 505 LKALD 509 (676)
Q Consensus 505 ~~a~~ 509 (676)
.++..
T Consensus 75 t~a~~ 79 (260)
T PLN03120 75 TPAED 79 (260)
T ss_pred EeccC
Confidence 99764
No 82
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.34 E-value=1e-11 Score=127.36 Aligned_cols=80 Identities=34% Similarity=0.663 Sum_probs=77.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.++|||+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|..|+..+++..|.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999999754
No 83
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=4e-12 Score=123.30 Aligned_cols=79 Identities=23% Similarity=0.525 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|+|.||||..-+.||+.+|.+||.|.+|.|+.+. .-+||||||+|+++++|++|.++|| |.++.||+|.|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LH-----gt~VEGRkIEV 168 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELH-----GTVVEGRKIEV 168 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhh-----cceeeceEEEE
Confidence 4799999999999999999999999999999999874 3479999999999999999999999 99999999999
Q ss_pred EEccCc
Q 005812 505 LKALDK 510 (676)
Q Consensus 505 ~~a~~k 510 (676)
..|-.+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998765
No 84
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.1e-12 Score=114.47 Aligned_cols=78 Identities=29% Similarity=0.496 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
...+.|||+||+..+++.+|...|..||.|..|+|..+ ..|||||+|+++.+|..|+..|+|..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 44789999999999999999999999999999999886 5799999999999999999999999999999999998
Q ss_pred cCC
Q 005812 294 VPK 296 (676)
Q Consensus 294 ~~~ 296 (676)
.-.
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 544
No 85
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=1.9e-11 Score=125.38 Aligned_cols=174 Identities=25% Similarity=0.324 Sum_probs=126.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|.++|..||.|..+.+..+..++.++|||||+|.+.++|..|+..++ +..|.|++|.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~-----~~~~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN-----GKELEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC-----CCeECCceeEe
Confidence 5899999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccC----chhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeE
Q 005812 505 LKALD----KKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 580 (676)
Q Consensus 505 ~~a~~----k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 580 (676)
.++.. +...... ...... ................+
T Consensus 190 ~~~~~~~~~~~~~~~~--------------~~~~~~---------------------------~~~~~~~~~~~~~~~~~ 228 (306)
T COG0724 190 QKAQPASQPRSELSNN--------------LDASFA---------------------------KKLSRGKALLLEKSDNL 228 (306)
T ss_pred eccccccccccccccc--------------cchhhh---------------------------cccccccccccccccee
Confidence 99764 1100000 000000 00000001112234679
Q ss_pred EEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCC
Q 005812 581 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPS 659 (676)
Q Consensus 581 ~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~ 659 (676)
++.|++..++..++...|. .+|.+....+...... .......++.+.....+...+....++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (306)
T COG0724 229 YVGNLPLKTAEEELADLFK---------SRGDIVRASLPPSKDG------KIPKSRSFVGNEASKDALESNSRGNKKKI 292 (306)
T ss_pred eccccccccchhHHHHhcc---------ccccceeeeccCCCCC------cccccccccchhHHHhhhhhhccccceee
Confidence 9999999999999999999 5888876666544321 23444555666666666666666555433
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.31 E-value=7.2e-12 Score=121.24 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=71.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ++|||||+|.++++|..||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 56999999999999999999999999999999998753 57999999999999999996 999999999999999754
Q ss_pred C
Q 005812 296 K 296 (676)
Q Consensus 296 ~ 296 (676)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 87
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=3.1e-12 Score=119.08 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
.-++|||+||+|.+..+.|+++|++||.|++..|+.|+.+|+++|||||+|++.++|.+|++. -.-.|+||+-.|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 457899999999999999999999999999999999999999999999999999999999995 4556899998888774
Q ss_pred C
Q 005812 295 P 295 (676)
Q Consensus 295 ~ 295 (676)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 88
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=4.1e-13 Score=119.27 Aligned_cols=80 Identities=28% Similarity=0.476 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
+.-|||+|||+..||.||.-+|++||.|+.|.+++|+.+|.++||||++|++..+..-|+..|| |+.|.||.|+|
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N-----Giki~gRtirV 109 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN-----GIKILGRTIRV 109 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccC-----CceecceeEEe
Confidence 5789999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEccC
Q 005812 505 LKALD 509 (676)
Q Consensus 505 ~~a~~ 509 (676)
.....
T Consensus 110 DHv~~ 114 (219)
T KOG0126|consen 110 DHVSN 114 (219)
T ss_pred eeccc
Confidence 87554
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=5.4e-12 Score=106.46 Aligned_cols=87 Identities=25% Similarity=0.524 Sum_probs=81.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 210 ~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
+......+.|||.++...++|++|.+.|..||.|..+.+..++.+|-.+|||+|+|.+.++|+.|+..+||..+-|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC
Q 005812 290 VDWAVPK 296 (676)
Q Consensus 290 v~~a~~~ 296 (676)
|+|+-.+
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9998543
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=5.5e-12 Score=106.41 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=81.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
....+..|||.++...+++++|.+.|..||.|..+.+-.|..+|..+|||+|+|.+.++|+.|+..+| |..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N-----g~~ll~q 142 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN-----GAELLGQ 142 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhcc-----chhhhCC
Confidence 45568999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.|+..+.
T Consensus 143 ~v~VDw~Fv~g 153 (170)
T KOG0130|consen 143 NVSVDWCFVKG 153 (170)
T ss_pred ceeEEEEEecC
Confidence 99999988654
No 91
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.5e-11 Score=117.95 Aligned_cols=81 Identities=23% Similarity=0.461 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+-+||||.-|+++++|.+|+..|+.||.|..|.|+.++.+|+++|||||+|+++-+...|.+..+ |.+|+|+.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad-----G~~Idgrri 173 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD-----GIKIDGRRI 173 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc-----CceecCcEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEcc
Q 005812 503 TVLKAL 508 (676)
Q Consensus 503 ~v~~a~ 508 (676)
.|.+-.
T Consensus 174 ~VDvER 179 (335)
T KOG0113|consen 174 LVDVER 179 (335)
T ss_pred EEEecc
Confidence 999844
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.28 E-value=7.1e-12 Score=113.72 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
.-.+|.|-||-+.++.++|+.+|++||.|-.|.|+.|..++.++|||||.|-...+|+.|+++|+ |.+|+|+.|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD-----G~~ldgRelr 86 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD-----GAVLDGRELR 86 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhc-----ceeeccceee
Confidence 34789999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccC
Q 005812 504 VLKALD 509 (676)
Q Consensus 504 v~~a~~ 509 (676)
|++|.-
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 998763
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=7.6e-13 Score=117.56 Aligned_cols=80 Identities=29% Similarity=0.448 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
.+..|||+|||+..||.||.-.|++||.|.+|.+++|..||+++||||+.|++..+...|+..|||..|.||.|+|+...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999998754
No 94
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.26 E-value=7.9e-12 Score=113.42 Aligned_cols=85 Identities=32% Similarity=0.526 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
........|.|-||-+-++.++|+.+|++||.|-+|.|+.|+.++.++|||||.|....+|+.|+.+|+|..++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 005812 291 DWAVP 295 (676)
Q Consensus 291 ~~a~~ 295 (676)
+++.-
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 98753
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=2.6e-11 Score=123.21 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHcCCCCCCCeeecCcE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTV--EAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~--~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
.+.+|||+||++.++++||..+|+.||.|..|.|++ .+| +|||||+|.+. .++.+|+..|| |..+.||.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLN-----GAEWKGR~ 79 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYN-----GCVWKGGR 79 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhc-----CCeecCce
Confidence 457999999999999999999999999999999984 356 99999999988 78999999999 99999999
Q ss_pred EEEEEccCc
Q 005812 502 LTVLKALDK 510 (676)
Q Consensus 502 l~v~~a~~k 510 (676)
|+|..|++.
T Consensus 80 LKVNKAKP~ 88 (759)
T PLN03213 80 LRLEKAKEH 88 (759)
T ss_pred eEEeeccHH
Confidence 999999874
No 96
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.2e-11 Score=116.83 Aligned_cols=83 Identities=23% Similarity=0.396 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
..+-+||||.-|+++++|..|+..|+.||.|..|.|+.+..+|+++|||||+|.++-+...|.+..+|..|+|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ecC
Q 005812 293 AVP 295 (676)
Q Consensus 293 a~~ 295 (676)
-.-
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 533
No 97
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=4.9e-11 Score=94.44 Aligned_cols=72 Identities=38% Similarity=0.565 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 427 ~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
+|+|+|||..+++++|+++|..||.|..+.++.+. +.++|+|||+|.+.++|.+|+..++ +..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~-----~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALN-----GTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhC-----CcEECCEEEeeC
Confidence 48999999999999999999999999999888765 6788999999999999999999999 999999999873
No 98
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=5.1e-11 Score=96.02 Aligned_cols=83 Identities=28% Similarity=0.467 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.+.-++.|||+|||+.+|.++..++|.+||.|..|+|-..+. .+|-|||.|++..+|++|+.+|+|..++++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 344578999999999999999999999999999999977543 67899999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
+..+..
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 987754
No 99
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.24 E-value=4.7e-11 Score=113.55 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
+.+|||+||++.+|+++|+++|+.||.|.+|.|+++. ..+++|||+|.++++|..|+ .|+ |..|.|++|.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLn-----Ga~l~d~~I~I 75 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLS-----GATIVDQRVCI 75 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcC-----CCeeCCceEEE
Confidence 5799999999999999999999999999999999873 45689999999999999999 799 99999999999
Q ss_pred EEccC
Q 005812 505 LKALD 509 (676)
Q Consensus 505 ~~a~~ 509 (676)
..+..
T Consensus 76 t~~~~ 80 (243)
T PLN03121 76 TRWGQ 80 (243)
T ss_pred EeCcc
Confidence 98654
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=2.2e-11 Score=123.73 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCH--HHHHHHHHHhCCceeCCeeEEEE
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK--RDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
....+|||+||++.+++++|+.+|..||.|.+|.|++ .+| +|||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457999999999999999999999999999999994 466 89999999987 78999999999999999999999
Q ss_pred EecCC
Q 005812 292 WAVPK 296 (676)
Q Consensus 292 ~a~~~ 296 (676)
.++|.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 88764
No 101
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.7e-12 Score=113.97 Aligned_cols=88 Identities=27% Similarity=0.437 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||++|...++|.-|...|=+||.|..|.++.|.++++.+|||||+|.-.++|..||..||+..+.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 005812 293 AVPKNIYS 300 (676)
Q Consensus 293 a~~~~~~~ 300 (676)
+.|.....
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99876543
No 102
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=3.7e-11 Score=106.60 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
..+.|||+||+..+++.||...|..||.|.+|.|-.. +.|||||+|+++.+|..|+..|+ |..|.|..|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LD-----G~~~cG~r~r 78 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLD-----GKDICGSRIR 78 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcC-----CccccCceEE
Confidence 3589999999999999999999999999999987654 58999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 005812 504 VLKALDK 510 (676)
Q Consensus 504 v~~a~~k 510 (676)
|+++.-+
T Consensus 79 VE~S~G~ 85 (195)
T KOG0107|consen 79 VELSTGR 85 (195)
T ss_pred EEeecCC
Confidence 9997644
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=6.1e-11 Score=93.56 Aligned_cols=71 Identities=38% Similarity=0.550 Sum_probs=66.6
Q ss_pred EcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 430 ICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 430 V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
|+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..++ +..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~-----~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN-----GKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC-----CCeeCCcEEEeC
Confidence 57999999999999999999999999998887778899999999999999999999999 999999999873
No 104
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.20 E-value=6.9e-11 Score=112.41 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
...+|||+||++.+|+++|+++|+.||.|.+|.|+++. ..++||||+|.++++|..|+. |+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999874 456899999999999999997 89999999999998764
No 105
>smart00362 RRM_2 RNA recognition motif.
Probab=99.20 E-value=7.4e-11 Score=93.43 Aligned_cols=71 Identities=45% Similarity=0.789 Sum_probs=66.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 218 ~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
+|+|+|||..++.++|+++|..||.|..+.+..++ +.++|+|||+|.+.++|+.|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999998875 678899999999999999999999999999999887
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.1e-12 Score=142.13 Aligned_cols=233 Identities=19% Similarity=0.139 Sum_probs=179.6
Q ss_pred CcEEEEcCCCccccH-HHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecC
Q 005812 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (676)
Q Consensus 121 ~~~l~V~nLp~~~~~-~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~ 199 (676)
.+...+.++.+.... +..+..|+.+|.|..++++.-. ..-.....+++.+....+++.|.. ..+..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g---------~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~ 640 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRG---------FKAHEQPQQQKVQSKHGSAESATV-PAGGALAN 640 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCcccc---------ccccccchhhhhhccccchhhccc-ccccccCC
Confidence 344566666555543 3678899999999999976411 111223367899999999988865 56666777
Q ss_pred eEEEEecCCCCC----------CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHH
Q 005812 200 GTVWARQLGGEG----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269 (676)
Q Consensus 200 ~~i~v~~~~~~~----------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 269 (676)
+...+-...... ......++||+||+..+.+.+|...|..+|.+..+++.-....+..+|+|||.|..++
T Consensus 641 ~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~ 720 (881)
T KOG0128|consen 641 RSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPE 720 (881)
T ss_pred ccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCC
Confidence 666553322111 1123478999999999999999999999999988877755567889999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCC
Q 005812 270 DAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNAD 349 (676)
Q Consensus 270 ~A~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (676)
+|.+|+....+.. .| +
T Consensus 721 ~~~aaV~f~d~~~-~g----------K----------------------------------------------------- 736 (881)
T KOG0128|consen 721 HAGAAVAFRDSCF-FG----------K----------------------------------------------------- 736 (881)
T ss_pred chhhhhhhhhhhh-hh----------h-----------------------------------------------------
Confidence 9999999533322 22 0
Q ss_pred chhHHHHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEE
Q 005812 350 FDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIF 429 (676)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 429 (676)
..|+
T Consensus 737 ----------------------------------------------------------------------------~~v~ 740 (881)
T KOG0128|consen 737 ----------------------------------------------------------------------------ISVA 740 (881)
T ss_pred ----------------------------------------------------------------------------hhhh
Confidence 3699
Q ss_pred EcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccC
Q 005812 430 ICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (676)
Q Consensus 430 V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~ 509 (676)
|.|.|+..|.++++.+|+++|++.+++++.. ..|+++|.|+|.|.++.+|.+++..+. ...+.-+.+.|..+.+
T Consensus 741 i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d-----~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 741 ISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVD-----VAGKRENNGEVQVSNP 814 (881)
T ss_pred eeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccch-----hhhhhhcCccccccCC
Confidence 9999999999999999999999999987666 468999999999999999999999888 7777777777766554
No 107
>smart00360 RRM RNA recognition motif.
Probab=99.16 E-value=1e-10 Score=92.31 Aligned_cols=71 Identities=38% Similarity=0.707 Sum_probs=66.6
Q ss_pred EcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 221 V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
|+|||..+++++|+.+|..||.|..+.+..++.++.++|+|||+|.+.++|..|+..+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778899999999999999999999999999999998873
No 108
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.1e-11 Score=111.50 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=79.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||++|..++++.-|...|-+||.|..|.++.|-.+++.+|||||+|...++|..|+..|| +..|.||.|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn-----esEL~GrtirV 84 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN-----ESELFGRTIRV 84 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc-----hhhhcceeEEE
Confidence 3799999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEccCch
Q 005812 505 LKALDKK 511 (676)
Q Consensus 505 ~~a~~k~ 511 (676)
.+|.|..
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 9999854
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=3.3e-10 Score=90.18 Aligned_cols=74 Identities=39% Similarity=0.551 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEE
Q 005812 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (676)
Q Consensus 427 ~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~ 506 (676)
+|+|+|||..+++++|+++|+.||.|..+.+..+... .++|+|||+|.+.++|..|+..++ +..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~-----~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALN-----GKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEeC
Confidence 4899999999999999999999999999988877544 679999999999999999999999 8999999999864
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=9.1e-12 Score=135.16 Aligned_cols=199 Identities=19% Similarity=0.142 Sum_probs=161.9
Q ss_pred eEEEEecCHHHHHHHHHHhCCceecCeEEEEeeccccchHHHhhhhhchhhhhhhhhhccCCCCCcccccccccchhhcc
Q 005812 13 FGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLES 92 (676)
Q Consensus 13 ~afV~F~~~edA~~Al~~~~g~~i~gr~i~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (676)
++++.+....+++.|... .|.-+.++.+.|..+.+++...
T Consensus 616 ~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~ad~~~~~~--------------------------------------- 655 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATVP-AGGALANRSAAVGLADAEEKEE--------------------------------------- 655 (881)
T ss_pred hhhhhhccccchhhcccc-cccccCCccccCCCCCchhhhh---------------------------------------
Confidence 889999999999999887 8889999999998886553111
Q ss_pred CCCCCCCcccccCcccCCCCccchhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCcc
Q 005812 93 GKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKM 172 (676)
Q Consensus 93 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~ 172 (676)
+........+...++||+||+..+.+.+|+..|..+|.+..+.+..-+ ..++.+
T Consensus 656 -----------------~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~---------n~~~~r 709 (881)
T KOG0128|consen 656 -----------------NFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK---------NEKRFR 709 (881)
T ss_pred -----------------ccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHh---------hccccc
Confidence 000011122445678999999999999999999999988877754222 347889
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccC
Q 005812 173 DASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (676)
Q Consensus 173 g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~ 252 (676)
|+||+.|..++++.+|+....+..++ +..|+|+|+|+..|.++++.+++.+|.+.+++++..+
T Consensus 710 G~~Y~~F~~~~~~~aaV~f~d~~~~g-----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 710 GKAYVEFLKPEHAGAAVAFRDSCFFG-----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred cceeeEeecCCchhhhhhhhhhhhhh-----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 99999999999999999955544333 4579999999999999999999999999999988764
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 253 ~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.|+.+|.|||.|.++.+|.+++...+...+.-+.+.|..+.|
T Consensus 773 -~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 773 -AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred -ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 789999999999999999999998888888778888887766
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.12 E-value=1.4e-10 Score=121.92 Aligned_cols=85 Identities=34% Similarity=0.548 Sum_probs=80.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
+.|||+|+|+++++++|.++|+..|.|.+++++.|..+|+++||||++|.+.++|.+|++.|| |..+.||+|+|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN-----g~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN-----GAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC-----CcccCCceEEee
Confidence 799999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccCchhhhh
Q 005812 506 KALDKKLAHD 515 (676)
Q Consensus 506 ~a~~k~~~~~ 515 (676)
|+...+....
T Consensus 94 ~~~~~~~~~~ 103 (435)
T KOG0108|consen 94 YASNRKNAER 103 (435)
T ss_pred cccccchhHH
Confidence 9887665443
No 112
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=5e-10 Score=89.10 Aligned_cols=74 Identities=39% Similarity=0.714 Sum_probs=68.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 218 ~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987644 5789999999999999999999999999999999864
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.08 E-value=2.2e-10 Score=120.45 Aligned_cols=81 Identities=32% Similarity=0.593 Sum_probs=78.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
+.|||+|+|+++++++|..+|+..|.|.+++++.|+.+|+.+||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 005812 297 N 297 (676)
Q Consensus 297 ~ 297 (676)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=4.9e-10 Score=88.49 Aligned_cols=61 Identities=26% Similarity=0.511 Sum_probs=55.6
Q ss_pred HHHHHHHHH----hCCceeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 439 NEEVKQRFS----AFGEVVSFV-PVLHQVT--KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 439 eedl~~~F~----~~G~v~~v~-i~~~~~~--~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
+++|+++|+ +||.|.++. ++.++.+ +.++|||||+|.+.++|.+|+..|| |..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~-----g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN-----GRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEe
Confidence 578899998 999999995 7777666 8899999999999999999999999 99999999986
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.07 E-value=6.6e-10 Score=83.60 Aligned_cols=56 Identities=39% Similarity=0.726 Sum_probs=51.1
Q ss_pred HHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 233 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
|+++|++||.|.++.+..+. +++|||+|.+.++|+.|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998752 589999999999999999999999999999999986
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=6e-10 Score=83.82 Aligned_cols=56 Identities=34% Similarity=0.497 Sum_probs=50.2
Q ss_pred HHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEc
Q 005812 442 VKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 507 (676)
Q Consensus 442 l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a 507 (676)
|+++|++||.|..+.+.... +++|||+|.+.++|..|++.|| |..++|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~-----~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLN-----GRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHT-----TSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEEEC
Confidence 68999999999999876442 6899999999999999999999 99999999999985
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=99.01 E-value=1.2e-09 Score=86.28 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=54.7
Q ss_pred HHHHHHhhc----cCCceEEEE-EcccCCC--CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 230 VNEIKDMFS----PVGLVWNVY-IPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 230 e~~l~~~F~----~~G~i~~v~-i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
+++|+++|+ .||.|.++. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888898 999999995 6666555 889999999999999999999999999999999976
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=8.6e-09 Score=106.84 Aligned_cols=172 Identities=24% Similarity=0.309 Sum_probs=119.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCC---CCcee---EEEEEecCHHHHHHHHHHhCCceeC
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKG---FAFVKFTCKRDAESAIQKFNGQKFG 284 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g---~afV~f~~~~~A~~A~~~l~~~~~~ 284 (676)
....-.+.|||++||++++|++|...|..||.+. |.++..... -..+| |+|+-|+++...+.-+....- +
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~ 329 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G 329 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---c
Confidence 3445578999999999999999999999999876 666642211 13455 999999999998887765432 4
Q ss_pred CeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcc
Q 005812 285 KRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKL 364 (676)
Q Consensus 285 g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (676)
...+.+..+.+...... .+-...... +..|-.
T Consensus 330 ~~~~yf~vss~~~k~k~------VQIrPW~la------------------------------Ds~fv~------------ 361 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKE------VQIRPWVLA------------------------------DSDFVL------------ 361 (520)
T ss_pred ccceEEEEecCcccccc------eeEEeeEec------------------------------cchhhh------------
Confidence 44444444433211000 000000000 000000
Q ss_pred cccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHH
Q 005812 365 TSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQ 444 (676)
Q Consensus 365 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~ 444 (676)
.......+.+||||++||-.++.++|..
T Consensus 362 ----------------------------------------------------d~sq~lDprrTVFVGgvprpl~A~eLA~ 389 (520)
T KOG0129|consen 362 ----------------------------------------------------DHNQPIDPRRTVFVGGLPRPLTAEELAM 389 (520)
T ss_pred ----------------------------------------------------ccCcccCccceEEecCCCCcchHHHHHH
Confidence 0000223458999999999999999999
Q ss_pred HHH-hCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 005812 445 RFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486 (676)
Q Consensus 445 ~F~-~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~ 486 (676)
+|. -||.|.++-|-.|++-+.++|-|-|+|.+..+-.+||.+
T Consensus 390 imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 390 IMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 999 699999999999987889999999999999999999976
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.9e-10 Score=108.65 Aligned_cols=85 Identities=21% Similarity=0.349 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
.+|.+.|||+-|.+-++++||.-+|+.||.|.+|.|++|..+|.+..||||+|.+.+++.+|.-+|+ +..|++|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd-----NvLIDDrR 310 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD-----NVLIDDRR 310 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc-----ceeeccce
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|+|.|+++-.
T Consensus 311 IHVDFSQSVs 320 (479)
T KOG0415|consen 311 IHVDFSQSVS 320 (479)
T ss_pred EEeehhhhhh
Confidence 9999987643
No 120
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.97 E-value=3.6e-09 Score=87.41 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=75.7
Q ss_pred CCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcC
Q 005812 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (676)
Q Consensus 577 ~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng 656 (676)
+|+|+|||||...|.++|.+++.+. -.|...-+.++.|..+. -+.|||||.|.+++.|.+-.+.++|
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~-------~~g~yDF~YLPiDf~~~------~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEH-------FKGKYDFFYLPIDFKNK------CNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHh-------ccCcceEEEeeeeccCC------CceEEEEEEcCCHHHHHHHHHHHcC
Confidence 3799999999999999999999975 25778889999998775 7899999999999999999999999
Q ss_pred CCC-CCCcccCccccccc
Q 005812 657 NPS-KLFYHHCFDAADAQ 673 (676)
Q Consensus 657 ~~~-~~~~~~~~~~~~~~ 673 (676)
.+| .|...+.+.|+||.
T Consensus 68 ~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 68 KKWPNFNSKKVCEISYAR 85 (97)
T ss_pred CccccCCCCcEEEEehhH
Confidence 999 68889999999985
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.2e-08 Score=105.78 Aligned_cols=157 Identities=20% Similarity=0.244 Sum_probs=116.4
Q ss_pred hcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCC--
Q 005812 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ-- 194 (676)
Q Consensus 117 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~-- 194 (676)
..+.++.||||+||++++|+.|...|..||.+. |..+..... .+.....-+-||+|+.|+++..++.-+..+.-
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~---~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANS---RGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccc---cccCCCCCcccEEEEEecchHHHHHHHHHHhhcc
Confidence 346788999999999999999999999999753 344431110 00111111225999999999999988876532
Q ss_pred ---------CeecCeEEEEec---------CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhc-cCCceEEEEEcccCCCC
Q 005812 195 ---------KEIKGGTVWARQ---------LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFS-PVGLVWNVYIPHNTDTG 255 (676)
Q Consensus 195 ---------~~~~~~~i~v~~---------~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~-~~G~i~~v~i~~~~~~~ 255 (676)
..+..+.+.+++ ..........+||||++||.-++.++|..+|+ -||.|..+-|-.|++-+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 111222222221 11223445679999999999999999999999 59999999999998888
Q ss_pred CceeEEEEEecCHHHHHHHHHH
Q 005812 256 LSKGFAFVKFTCKRDAESAIQK 277 (676)
Q Consensus 256 ~~~g~afV~f~~~~~A~~A~~~ 277 (676)
-.+|-|-|.|.+..+--+||.+
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCcceeeecccHHHHHHHhh
Confidence 8999999999999999999985
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.9e-09 Score=104.33 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
..++...|||..|.+.++.++|.-+|+.||.|.+|.|+++..+|.+-.||||+|.+.+++++|.-+|++..|..++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.+-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9866443
No 123
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1e-09 Score=100.77 Aligned_cols=139 Identities=18% Similarity=0.263 Sum_probs=119.5
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecC
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~ 199 (676)
..+||||+|+...++++-|.++|-+.|+|..|.|+.+++ +..+ ||||.|.++-.+.-|+.-+||..+.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----------~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----------QEQK-FAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----------CCCc-eeeeecccccchhhhhhhcccchhcc
Confidence 457999999999999999999999999999999987654 5555 99999999999999999999999998
Q ss_pred eEEEEecCCCCCCCCCCcEEEEcC----CCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 005812 200 GTVWARQLGGEGSKTQKWKLIIRN----IPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (676)
Q Consensus 200 ~~i~v~~~~~~~~~~~~~~v~V~n----Lp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 275 (676)
..+.+. ++-++ |...++++.+...|+.-|++..+++.++. +|+++.++|+.+-...+.-.++
T Consensus 77 ~e~q~~-------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~ 142 (267)
T KOG4454|consen 77 DEEQRT-------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFAL 142 (267)
T ss_pred chhhcc-------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHh
Confidence 888774 44455 66778999999999999999999999885 5888899999988877777788
Q ss_pred HHhCCcee
Q 005812 276 QKFNGQKF 283 (676)
Q Consensus 276 ~~l~~~~~ 283 (676)
....+...
T Consensus 143 ~~y~~l~~ 150 (267)
T KOG4454|consen 143 DLYQGLEL 150 (267)
T ss_pred hhhcccCc
Confidence 76666544
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.80 E-value=1.7e-08 Score=92.69 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhC-CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAF-GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
....++|..+|..+.+.++..+|.+| |.|..+++-+++.+|.++|||||+|++++.|.-|-..|| +..|.|+.|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN-----NYLl~e~lL 122 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN-----NYLLMEHLL 122 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh-----hhhhhhhee
Confidence 34589999999999999999999998 778888888999999999999999999999999999999 999999999
Q ss_pred EEEEccCc
Q 005812 503 TVLKALDK 510 (676)
Q Consensus 503 ~v~~a~~k 510 (676)
.|.+-.+-
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99885543
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.79 E-value=1.9e-08 Score=92.36 Aligned_cols=85 Identities=25% Similarity=0.331 Sum_probs=78.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccC-CceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.......++|..+|..+.+.++..+|.++ |.|..+++.+++.||.++|||||+|.+++.|.-|-+.||+..|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456789999999999999999999998 77888899899999999999999999999999999999999999999999
Q ss_pred EEecCC
Q 005812 291 DWAVPK 296 (676)
Q Consensus 291 ~~a~~~ 296 (676)
.+..|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998765
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.79 E-value=4.9e-09 Score=105.58 Aligned_cols=178 Identities=18% Similarity=0.225 Sum_probs=140.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc-eeCCeeEEEEE
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-KFGKRPIAVDW 292 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g~~i~v~~ 292 (676)
...++.|++++...+.+.+...++..+|....+.+........++|++++.|...+.+..|+.. .+. .+.++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCcc
Confidence 3567899999999999998999999999888887777666788999999999999999999995 553 45555555444
Q ss_pred ecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCC
Q 005812 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (676)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 372 (676)
......+.....
T Consensus 165 ~~~~~~~~~n~~-------------------------------------------------------------------- 176 (285)
T KOG4210|consen 165 NTRRGLRPKNKL-------------------------------------------------------------------- 176 (285)
T ss_pred cccccccccchh--------------------------------------------------------------------
Confidence 332221000000
Q ss_pred CCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEE-EcCCCCCCCHHHHHHHHHhCCc
Q 005812 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIF-ICNLPFDLDNEEVKQRFSAFGE 451 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~teedl~~~F~~~G~ 451 (676)
.. .......++| +.||++.+++++|+.+|..+|.
T Consensus 177 --------------------------------------------~~-~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~ 211 (285)
T KOG4210|consen 177 --------------------------------------------SR-LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGE 211 (285)
T ss_pred --------------------------------------------cc-cccCccccceeecccccccchHHHhhhccCcCc
Confidence 00 0111123444 9999999999999999999999
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 452 v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
|..++++.+..++.++|||||.|.....+..++.. . ...+.++++.+.+..++.
T Consensus 212 i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 212 ITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-Q-----TRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred ceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-c-----cCcccCcccccccCCCCc
Confidence 99999999999999999999999999999999987 7 889999999999987764
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=4.4e-09 Score=115.13 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=137.8
Q ss_pred hcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCe
Q 005812 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (676)
Q Consensus 117 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~ 196 (676)
..+..++||++||+..+++.+|+..|..+|.|.+|.+-..+ -+....||||.|.+...+-.|...+.+..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----------~~~esa~~f~~~~n~dmtp~ak~e~s~~~ 437 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----------IKTESAYAFVSLLNTDMTPSAKFEESGPL 437 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----------CCcccchhhhhhhccccCcccchhhcCCc
Confidence 44678899999999999999999999999999999865432 35667889999999999999999999988
Q ss_pred ecCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHH
Q 005812 197 IKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276 (676)
Q Consensus 197 ~~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 276 (676)
|....+.+.-.. ......+.+++++|+..+....|...|..||.|..|.+-. ..-||||.|.+...|+.|++
T Consensus 438 I~~g~~r~glG~--~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 438 IGNGTHRIGLGQ--PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATH 509 (975)
T ss_pred cccCcccccccc--cccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHH
Confidence 887765553221 2556778999999999999999999999999999876644 44699999999999999999
Q ss_pred HhCCceeCC--eeEEEEEecCCC
Q 005812 277 KFNGQKFGK--RPIAVDWAVPKN 297 (676)
Q Consensus 277 ~l~~~~~~g--~~i~v~~a~~~~ 297 (676)
.|.|..|++ +.+.|.++.+..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred HHhcCcCCCCCcccccccccCCC
Confidence 999999975 779999986643
No 128
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=1e-08 Score=96.63 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=75.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
..||.+.|--+++++-|-..|.+|-.....++++++.+|+++||+||.|.++.++.+|+..|+ |..++.|+|.+.
T Consensus 191 fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~-----gkyVgsrpiklR 265 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN-----GKYVGSRPIKLR 265 (290)
T ss_pred ceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc-----ccccccchhHhh
Confidence 589999999999999999999999999999999999999999999999999999999999999 999999999987
Q ss_pred EccCch
Q 005812 506 KALDKK 511 (676)
Q Consensus 506 ~a~~k~ 511 (676)
....++
T Consensus 266 kS~wke 271 (290)
T KOG0226|consen 266 KSEWKE 271 (290)
T ss_pred hhhHHh
Confidence 655544
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=4.5e-08 Score=96.41 Aligned_cols=80 Identities=28% Similarity=0.410 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
.+..-.+|||++|-..+++.+|+++|.+||.|++++++.. +++|||+|.+.+.|..|..++-. .+.|+|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n----~lvI~G~ 293 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFN----KLVINGF 293 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcc----eeeecce
Confidence 4445689999999989999999999999999999988754 56999999999999999877641 6888999
Q ss_pred EEEEEEccCc
Q 005812 501 QLTVLKALDK 510 (676)
Q Consensus 501 ~l~v~~a~~k 510 (676)
+|.|.|..++
T Consensus 294 Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 RLKIKWGRPK 303 (377)
T ss_pred EEEEEeCCCc
Confidence 9999999884
No 130
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.69 E-value=1.8e-08 Score=101.46 Aligned_cols=169 Identities=18% Similarity=0.270 Sum_probs=135.0
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
....++|++++...+.+.++..++..+|.+..+.+.... ....++|++++.|...+.+..|+...-...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~---------~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~ 156 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE---------DSLSSKGGLSVHFAGKSQFFAALEESGSKVLD 156 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhc---------cccccccceeeccccHHHHHHHHHhhhccccc
Confidence 356789999999999999999999999988777755432 34788999999999999999999854333444
Q ss_pred CeEEEE-----ecC-----CCCCCCCCCcEEE-EcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecC
Q 005812 199 GGTVWA-----RQL-----GGEGSKTQKWKLI-IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (676)
Q Consensus 199 ~~~i~v-----~~~-----~~~~~~~~~~~v~-V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 267 (676)
+..+.. +.. ..........++| |++|+..+++++|+.+|..+|.|..++++.++.++..+|||||.|..
T Consensus 157 ~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 157 GNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 433321 110 0011222345555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 005812 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 268 ~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~ 297 (676)
...+..++.. ....+.++++.+....+..
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred chhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 9999999987 7888899999999887764
No 131
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=5.9e-09 Score=95.87 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||.|+...++|+-|.++|-+-|+|..|.|+.++ ++..+ ||||.|.++....-|++-+||..+.++.+.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34456899999999999999999999999999999999876 45455 99999999999999999999999988888876
Q ss_pred E
Q 005812 292 W 292 (676)
Q Consensus 292 ~ 292 (676)
+
T Consensus 83 ~ 83 (267)
T KOG4454|consen 83 L 83 (267)
T ss_pred c
Confidence 4
No 132
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.60 E-value=8e-08 Score=103.75 Aligned_cols=78 Identities=19% Similarity=0.433 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.-++||||++||..++++||.++|+.||.|.+|.++ .++|||||++....+|.+|+.+|+ ...+.++.|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~-----n~kv~~k~I 487 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLS-----NVKVADKTI 487 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHh-----cccccceee
Confidence 347899999999999999999999999999999664 358999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
+|.||..+.
T Consensus 488 ki~Wa~g~G 496 (894)
T KOG0132|consen 488 KIAWAVGKG 496 (894)
T ss_pred EEeeeccCC
Confidence 999999875
No 133
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.59 E-value=3.9e-08 Score=92.75 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=123.9
Q ss_pred cEEEEcCCCccccHHH-H--HHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 122 RTVIIGGLLNADMAEE-V--HRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 122 ~~l~V~nLp~~~~~~~-l--~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
-..+++++-..+..+- | ...|+.+-......+..+ +.+.-++++|+.|.....-.++-..-+++.+.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~----------~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~ 166 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD----------RPQPIRPEAFESFKASDALLKAETEKEKKKIG 166 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhc----------CCCccCcccccCcchhhhhhhhcccccccccc
Confidence 3566666655554433 2 556666654444443332 34677899999999888888877766777776
Q ss_pred CeEEEEecCC------CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHH
Q 005812 199 GGTVWARQLG------GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272 (676)
Q Consensus 199 ~~~i~v~~~~------~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 272 (676)
-..++..... -........+||.+.|...++.+-|-..|.+|-.....++++++.+|+++||+||.|.+..++.
T Consensus 167 ~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 167 KPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred CcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 6655442211 1123456789999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEe
Q 005812 273 SAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 273 ~A~~~l~~~~~~g~~i~v~~a 293 (676)
+|+..|+|..++.+.|.+.-+
T Consensus 247 rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHHHhhcccccccchhHhhhh
Confidence 999999999999999988654
No 134
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.57 E-value=9.8e-08 Score=103.08 Aligned_cols=78 Identities=27% Similarity=0.502 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
-++||||++|+..+++.||..+|+.||.|.+|.++. ++|+|||.+.+..+|.+|+.+|+...+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 368999999999999999999999999999999887 67999999999999999999999999999999999997
Q ss_pred CCCC
Q 005812 295 PKNI 298 (676)
Q Consensus 295 ~~~~ 298 (676)
.+..
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 6543
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=1.8e-07 Score=92.35 Aligned_cols=78 Identities=28% Similarity=0.385 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeeEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF-NGQKFGKRPIAV 290 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~i~v 290 (676)
......+|||++|-..++|.+|+++|-+||.|.++.+.. .+++|||+|.+.++|+.|..++ +...|.|.+|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 344568999999999999999999999999999999987 4578999999999999998864 555679999999
Q ss_pred EEecC
Q 005812 291 DWAVP 295 (676)
Q Consensus 291 ~~a~~ 295 (676)
.|+.+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99987
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.55 E-value=1.9e-07 Score=96.97 Aligned_cols=86 Identities=23% Similarity=0.346 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
....+++|+|.+|...+-..||+++|++||.|+-.+|+.+..+--.++|+||++.+..+|.+||..|+ .+.|.||
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-----rTELHGr 475 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-----RTELHGR 475 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-----hhhhcce
Confidence 45567899999999999999999999999999999999887666679999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|..++...
T Consensus 476 mISVEkaKNEp 486 (940)
T KOG4661|consen 476 MISVEKAKNEP 486 (940)
T ss_pred eeeeeecccCc
Confidence 99999987643
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.54 E-value=1.3e-07 Score=98.24 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
...+.|||.+|+..+-..+|+.+|++||.|+..+++.+..+.-.++|+||++.+.++|.+||..|+.+.|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999998877778999999999999999999999999999999999987
Q ss_pred cCC
Q 005812 294 VPK 296 (676)
Q Consensus 294 ~~~ 296 (676)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 653
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=8.8e-08 Score=105.17 Aligned_cols=162 Identities=21% Similarity=0.212 Sum_probs=134.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
.+++||++||+..+++.+|+..|..+|.|.+|.|-+.+ -+.-..||||.|.+...+-.|...+.+..|....+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46899999999999999999999999999999887653 34455789999999999999999888888766666655543
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
++
T Consensus 450 ~k------------------------------------------------------------------------------ 451 (975)
T KOG0112|consen 450 PK------------------------------------------------------------------------------ 451 (975)
T ss_pred cc------------------------------------------------------------------------------
Confidence 31
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
..+.+.+++++|+.-+....|...|..||.|..
T Consensus 452 -----------------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~ 484 (975)
T KOG0112|consen 452 -----------------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI 484 (975)
T ss_pred -----------------------------------------------cccceeeccCCCCCCChHHHHHHHhhccCccee
Confidence 112468999999999999999999999999998
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC--cEEEEEEccCchhh
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLA 513 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g--r~l~v~~a~~k~~~ 513 (676)
|.+- ...-||+|.|.+...|+.|+..|. |..|+| +.|.|.++......
T Consensus 485 Idy~------hgq~yayi~yes~~~aq~a~~~~r-----gap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 485 IDYR------HGQPYAYIQYESPPAAQAATHDMR-----GAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred eecc------cCCcceeeecccCccchhhHHHHh-----cCcCCCCCcccccccccCCCCC
Confidence 6542 235699999999999999999999 888875 68999998875533
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.42 E-value=7.2e-07 Score=86.53 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=75.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
..|+|.|||+.|+++||+++|..||.+..+-+-++ .+|.+.|.|-|.|...++|.+|++.++ ++.++|++|.+.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~-----gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYN-----GVALDGRPMKIE 157 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhc-----CcccCCceeeeE
Confidence 68999999999999999999999998888866666 579999999999999999999999999 999999999999
Q ss_pred EccCchhhh
Q 005812 506 KALDKKLAH 514 (676)
Q Consensus 506 ~a~~k~~~~ 514 (676)
...+.....
T Consensus 158 ~i~~~~~~~ 166 (243)
T KOG0533|consen 158 IISSPSQSK 166 (243)
T ss_pred EecCccccc
Confidence 887765443
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.36 E-value=1.3e-06 Score=84.84 Aligned_cols=85 Identities=27% Similarity=0.458 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
......|+|.|||+.++++||+++|..||.+..+.+-.++ .|.+.|.|-|.|...++|.+|++.++|..+.|+.|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999999999888875 788999999999999999999999999999999999998
Q ss_pred ecCCCC
Q 005812 293 AVPKNI 298 (676)
Q Consensus 293 a~~~~~ 298 (676)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 766544
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.35 E-value=3.5e-06 Score=69.80 Aligned_cols=79 Identities=22% Similarity=0.173 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHh--CCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec----C
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSA--FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK----G 499 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~----g 499 (676)
+||.|+|||-..|.++|.+++.. .|....++++.|..++...|||||.|.+++.|.+..+.++ |..+. .
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~-----g~~w~~~~s~ 76 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFN-----GKKWPNFNSK 76 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHc-----CCccccCCCC
Confidence 58999999999999999998876 3778889999999889999999999999999999999999 88775 5
Q ss_pred cEEEEEEccC
Q 005812 500 RQLTVLKALD 509 (676)
Q Consensus 500 r~l~v~~a~~ 509 (676)
+...|.||.-
T Consensus 77 Kvc~i~yAri 86 (97)
T PF04059_consen 77 KVCEISYARI 86 (97)
T ss_pred cEEEEehhHh
Confidence 6777888753
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.22 E-value=2.6e-06 Score=89.46 Aligned_cols=79 Identities=27% Similarity=0.356 Sum_probs=68.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
..+|||+|||++++..+|.++|..||.|+...|......+...+||||+|.+..+++.|+.+- -..++|++|.|
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As------p~~ig~~kl~V 361 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS------PLEIGGRKLNV 361 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC------ccccCCeeEEE
Confidence 456999999999999999999999999999988776533444599999999999999999774 58999999999
Q ss_pred EEccC
Q 005812 505 LKALD 509 (676)
Q Consensus 505 ~~a~~ 509 (676)
.-..+
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 87554
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.21 E-value=3.4e-06 Score=90.45 Aligned_cols=83 Identities=19% Similarity=0.325 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ---VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~---~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~ 498 (676)
++..++|||.||++.++++.|...|..||+|.+++|+.-. ...+.+.||||.|.+..+|++|++.|+ |..+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq-----g~iv~ 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ-----GIIVM 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc-----ceeee
Confidence 4556899999999999999999999999999999998753 345568899999999999999999999 99999
Q ss_pred CcEEEEEEccC
Q 005812 499 GRQLTVLKALD 509 (676)
Q Consensus 499 gr~l~v~~a~~ 509 (676)
+..+.+.|++.
T Consensus 246 ~~e~K~gWgk~ 256 (877)
T KOG0151|consen 246 EYEMKLGWGKA 256 (877)
T ss_pred eeeeeeccccc
Confidence 99999999854
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.21 E-value=1.8e-06 Score=90.62 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=69.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
..+|||+|||.+++..+|.++|..||.|....|......++..+||||+|.+.++++.|+++ +-..++++++.|+--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 35599999999999999999999999999988877544455569999999999999999997 78889999999986544
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.20 E-value=1.3e-06 Score=87.44 Aligned_cols=196 Identities=17% Similarity=0.158 Sum_probs=120.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
..|.|.||.+.++.++++.+|.-.|.|..+.|.....+ ......|||.|.+...+..|.+ |.++.|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 38999999999999999999999999999988764322 2345689999999999998887 7888888888777654
Q ss_pred cCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCC
Q 005812 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (676)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (676)
....... .|.-..-..+.++..+....|.|++
T Consensus 87 ~~~~~p~------------------------------------------------r~af~~l~~~navprll~pdg~Lp~ 118 (479)
T KOG4676|consen 87 GDEVIPD------------------------------------------------RFAFVELADQNAVPRLLPPDGVLPG 118 (479)
T ss_pred CCCCCcc------------------------------------------------HHHHHhcCcccccccccCCCCccCC
Confidence 2211000 0000000000011111122222222
Q ss_pred CCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCc---ccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCC
Q 005812 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQ---TEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 450 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G 450 (676)
..... ...++ |. ..-.++.+.+ ...-..-.++++|.+|+..+...++.+.|..+|
T Consensus 119 ~~~lt-------------------~~nh~-p~--ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~G 176 (479)
T KOG4676|consen 119 DRPLT-------------------KINHS-PN--AILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKG 176 (479)
T ss_pred CCccc-------------------cccCC-cc--ceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcc
Confidence 11110 00000 00 0000011100 001112237899999999999999999999999
Q ss_pred ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 005812 451 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487 (676)
Q Consensus 451 ~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l 487 (676)
.|.+..+- .+....+|.|.|........|+..+
T Consensus 177 ev~ya~~a----sk~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 177 EVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred hhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHhc
Confidence 99887543 3444567889999998888888665
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.16 E-value=3.4e-06 Score=82.27 Aligned_cols=83 Identities=23% Similarity=0.371 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.......+||+|+.+.++.+++..+|+.||.|..+.|+.+...+.++|||||+|.+.+.+..|+. |+|..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 44567899999999999999999999999999999999999998999999999999999999999 99999999999999
Q ss_pred EecC
Q 005812 292 WAVP 295 (676)
Q Consensus 292 ~a~~ 295 (676)
+..-
T Consensus 176 ~~r~ 179 (231)
T KOG4209|consen 176 LKRT 179 (231)
T ss_pred eeee
Confidence 8643
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.10 E-value=5e-06 Score=70.73 Aligned_cols=76 Identities=28% Similarity=0.347 Sum_probs=50.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
++.|+|.+++..++.++|++.|+.||.|.+|.+... ...|||.|.+++.|+.|+..+...++++..+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 468999999999999999999999999999876432 34789999999999999999986666678888888777
Q ss_pred EE
Q 005812 505 LK 506 (676)
Q Consensus 505 ~~ 506 (676)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 65
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.07 E-value=5.4e-06 Score=80.87 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
....+||+|+.+.++.+++..+|+.||.|..+.+..+...+.++|||||+|.+.+.++.|+. |+ +..|.|+.+.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~-----gs~i~~~~i~ 173 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LD-----GSEIPGPAIE 173 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cC-----Ccccccccce
Confidence 44789999999999999999999999999999999999998999999999999999999998 99 9999999999
Q ss_pred EEEccCc
Q 005812 504 VLKALDK 510 (676)
Q Consensus 504 v~~a~~k 510 (676)
|.+..-+
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9996643
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=3.5e-06 Score=88.57 Aligned_cols=73 Identities=23% Similarity=0.415 Sum_probs=66.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
.....++|+|-|||..+++++|+.+|+.||.|..|+.-+. .+|.+||+|-+..+|++|++.|++..+.|+.|.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4556789999999999999999999999999999766554 678999999999999999999999999999998
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.02 E-value=3.4e-06 Score=84.43 Aligned_cols=150 Identities=11% Similarity=0.133 Sum_probs=117.3
Q ss_pred EEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 005812 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (676)
Q Consensus 123 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i 202 (676)
.|.|.||.+.++.++++.||.-.|.|.++.|+..-.. ..-.-....|||.|.+...+..|.. |.++.+-+..+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d------~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdral 81 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDD------SKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRAL 81 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCC------ccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeE
Confidence 6899999999999999999999999999997753221 1112346789999999999998866 88888888887
Q ss_pred EEecCCCCC----------------------------------------------C----------CCCCcEEEEcCCCC
Q 005812 203 WARQLGGEG----------------------------------------------S----------KTQKWKLIIRNIPF 226 (676)
Q Consensus 203 ~v~~~~~~~----------------------------------------------~----------~~~~~~v~V~nLp~ 226 (676)
.|.++.... . ..-.++++|.+|+.
T Consensus 82 iv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~ 161 (479)
T KOG4676|consen 82 IVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLIS 161 (479)
T ss_pred EEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchh
Confidence 765332100 0 00137899999999
Q ss_pred CCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 005812 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (676)
Q Consensus 227 ~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 284 (676)
.+...++.++|..+|.|....+.. +....+|-|.|........|+.. +|..+.
T Consensus 162 ~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 162 AAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 999999999999999998776654 33556788999999999999994 787765
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.98 E-value=3.8e-05 Score=60.33 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=47.2
Q ss_pred EEEEcCCCccccHHH----HHHHhhcCC-CeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 005812 123 TVIIGGLLNADMAEE----VHRLAGSIG-TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (676)
Q Consensus 123 ~l~V~nLp~~~~~~~----l~~~F~~~G-~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (676)
.|+|.|||.+.+... |+.++..|| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------------------~~tAilrF~~~~~A~RA~KRmegEdV 64 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------------------GGTAILRFPNQEFAERAQKRMEGEDV 64 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------------TT-EEEEESSHHHHHHHHHHHTT--S
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------------------CCEEEEEeCCHHHHHHHHHhhccccc
Confidence 589999999877544 667787887 787775 35699999999999999999999999
Q ss_pred cCeEEEEecCC
Q 005812 198 KGGTVWARQLG 208 (676)
Q Consensus 198 ~~~~i~v~~~~ 208 (676)
.|..|.++...
T Consensus 65 fG~kI~v~~~~ 75 (90)
T PF11608_consen 65 FGNKISVSFSP 75 (90)
T ss_dssp SSS--EEESS-
T ss_pred ccceEEEEEcC
Confidence 99999997653
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.95 E-value=7.9e-07 Score=89.53 Aligned_cols=153 Identities=21% Similarity=0.266 Sum_probs=121.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce-eCCeeEEEEEecC
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGKRPIAVDWAVP 295 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~i~v~~a~~ 295 (676)
..+|++||.+.++..+|..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++|.. +.|.++.|.++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999997531111111122 34899999999999999999999874 7899999998876
Q ss_pred CCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCC
Q 005812 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (676)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 375 (676)
+...
T Consensus 76 kkqr---------------------------------------------------------------------------- 79 (584)
T KOG2193|consen 76 KKQR---------------------------------------------------------------------------- 79 (584)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5421
Q ss_pred CccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEE
Q 005812 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (676)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v 455 (676)
++.+-|+|+|...-++-|..+...||.+..|
T Consensus 80 -------------------------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~ 110 (584)
T KOG2193|consen 80 -------------------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENC 110 (584)
T ss_pred -------------------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHh
Confidence 2468899999999999999999999999998
Q ss_pred EEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccC
Q 005812 456 VPV-LHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (676)
Q Consensus 456 ~i~-~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~ 509 (676)
..+ .+.+ .-..=|+|.+.+.+..|+.+++ |..|....+.+.|-..
T Consensus 111 eqvnt~~e----tavvnvty~~~~~~~~ai~kl~-----g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 111 EQVNTDSE----TAVVNVTYSAQQQHRQAIHKLN-----GPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhccchH----HHHHHHHHHHHHHHHHHHHhhc-----chHhhhhhhhcccCch
Confidence 543 2322 2223478999999999999999 9999999999998544
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.87 E-value=4.1e-06 Score=84.50 Aligned_cols=143 Identities=19% Similarity=0.210 Sum_probs=111.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
..+||+||.+.++..||..+|...-.-.+-.++ ...||+||.+.+...|.+|++.+++ ...+.|.++.|.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sg----k~elqGkr~e~~ 71 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSG----KVELQGKRQEVE 71 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhch----hhhhcCceeecc
Confidence 469999999999999999999864111111112 2368999999999999999999982 478899999999
Q ss_pred EccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecC
Q 005812 506 KALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL 585 (676)
Q Consensus 506 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nl 585 (676)
...++.... +.+.|+|+
T Consensus 72 ~sv~kkqrs---------------------------------------------------------------rk~Qirni 88 (584)
T KOG2193|consen 72 HSVPKKQRS---------------------------------------------------------------RKIQIRNI 88 (584)
T ss_pred chhhHHHHh---------------------------------------------------------------hhhhHhcC
Confidence 987764221 35889999
Q ss_pred CcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCC
Q 005812 586 PKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPS 659 (676)
Q Consensus 586 p~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~ 659 (676)
|...-.+-|..+.. +||.|..|....-. .-...--|.|.+.+.+..||..|||+-+
T Consensus 89 ppql~wevld~Ll~---------qyg~ve~~eqvnt~---------~etavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 89 PPQLQWEVLDSLLA---------QYGTVENCEQVNTD---------SETAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred CHHHHHHHHHHHHh---------ccCCHhHhhhhccc---------hHHHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 99999999999999 79999998664221 1234556789999999999999999654
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.87 E-value=2.3e-05 Score=84.35 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCC---CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD---TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
.+..+.+||+||++.++++.|...|..||+|.+++|+..+. ..+.+-+|||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45578999999999999999999999999999999986432 234556799999999999999999999999999999
Q ss_pred EEEecCCC
Q 005812 290 VDWAVPKN 297 (676)
Q Consensus 290 v~~a~~~~ 297 (676)
+-|+++-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986543
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.85 E-value=5.1e-05 Score=59.65 Aligned_cols=69 Identities=26% Similarity=0.379 Sum_probs=47.8
Q ss_pred CeEEEcCCCCCCCHHH----HHHHHHhCC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 426 NTIFICNLPFDLDNEE----VKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 426 ~~l~V~nLp~~~teed----l~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
..|+|.|||.+.+... |+.++..+| .|..| +.+.|+|.|.+++.|.+|.+.|+ |-.+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRme-----gEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRME-----GEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHT-----T--SSSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhc-----ccccccc
Confidence 4799999999988655 456666776 56665 24689999999999999999999 9999999
Q ss_pred EEEEEEccC
Q 005812 501 QLTVLKALD 509 (676)
Q Consensus 501 ~l~v~~a~~ 509 (676)
.|.|.+...
T Consensus 68 kI~v~~~~~ 76 (90)
T PF11608_consen 68 KISVSFSPK 76 (90)
T ss_dssp --EEESS--
T ss_pred eEEEEEcCC
Confidence 999999644
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.40 E-value=0.00036 Score=59.37 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=44.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc-----eeCCeeEEEE
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-----KFGKRPIAVD 291 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-----~~~g~~i~v~ 291 (676)
+.|.|.+++..++-++|++.|+.||.|..|.+... ...|||.|.+++.|+.|+.++.-. .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999988763 235999999999999999976433 4566665554
Q ss_pred E
Q 005812 292 W 292 (676)
Q Consensus 292 ~ 292 (676)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.34 E-value=0.00041 Score=68.39 Aligned_cols=81 Identities=21% Similarity=0.416 Sum_probs=63.2
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHHhCCceeEEEEeecCCCC-Ccce-E-EEEEeCCHHHHHHHHHHcCCCCCCCe
Q 005812 425 QNTIFICNLPFDLDNEEV------KQRFSAFGEVVSFVPVLHQVTK-RPKG-T-GFLKFKTVEAATAAVSASKTTSGLGI 495 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl------~~~F~~~G~v~~v~i~~~~~~~-~~~g-~-afV~F~t~~~A~~Al~~l~~~~~~g~ 495 (676)
.+-+||-+||+.+-.|++ .++|.+||.|..+.|-+...+. ..-+ + .||+|.+.++|.+|++..+ |.
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD-----gs 188 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD-----GS 188 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhc-----cc
Confidence 357999999999887773 4799999999997554332111 1122 2 3999999999999999999 99
Q ss_pred eecCcEEEEEEccCc
Q 005812 496 FLKGRQLTVLKALDK 510 (676)
Q Consensus 496 ~l~gr~l~v~~a~~k 510 (676)
.++||.|+..|.-.|
T Consensus 189 ~~DGr~lkatYGTTK 203 (480)
T COG5175 189 LLDGRVLKATYGTTK 203 (480)
T ss_pred cccCceEeeecCchH
Confidence 999999999987653
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.29 E-value=0.00049 Score=67.82 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCCCHHHH------HHhhccCCceEEEEEcccCCC-CCceeEE--EEEecCHHHHHHHHHHhCCceeCC
Q 005812 215 QKWKLIIRNIPFKAKVNEI------KDMFSPVGLVWNVYIPHNTDT-GLSKGFA--FVKFTCKRDAESAIQKFNGQKFGK 285 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l------~~~F~~~G~i~~v~i~~~~~~-~~~~g~a--fV~f~~~~~A~~A~~~l~~~~~~g 285 (676)
...-+||-+||+.+..+++ .++|.+||.|..|.|.+...+ +...+.+ ||+|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4567999999998776663 569999999999988765311 2222333 999999999999999999999999
Q ss_pred eeEEEEEecCC
Q 005812 286 RPIAVDWAVPK 296 (676)
Q Consensus 286 ~~i~v~~a~~~ 296 (676)
+.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999887554
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.20 E-value=0.00028 Score=70.85 Aligned_cols=83 Identities=22% Similarity=0.230 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCe
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI 495 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~ 495 (676)
...+|||-+||..+++.+|.++|.++|.|.. +.|-.++.++.+++-|.|.|.++..|+.|+..++ +.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a-----gk 139 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA-----GK 139 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc-----cc
Confidence 3468999999999999999999999998753 5667788899999999999999999999999999 99
Q ss_pred eecCcEEEEEEccCch
Q 005812 496 FLKGRQLTVLKALDKK 511 (676)
Q Consensus 496 ~l~gr~l~v~~a~~k~ 511 (676)
.+.|.+|.|.+|..+.
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999999987664
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.05 E-value=0.0006 Score=68.55 Aligned_cols=85 Identities=26% Similarity=0.360 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceE--------EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 284 (676)
.....+|||-+||..+++++|..+|.++|.|. .|.|-++++++..+|-|.|.|.+...|+.|+.-+++..|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45678999999999999999999999999874 3667788899999999999999999999999999999999
Q ss_pred CeeEEEEEecCCC
Q 005812 285 KRPIAVDWAVPKN 297 (676)
Q Consensus 285 g~~i~v~~a~~~~ 297 (676)
+..|.|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886554
No 161
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.95 E-value=0.0017 Score=62.21 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=66.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
..|+|.||+.-++-+.+.+-|+.||.|....+..| ..+++.+-++|.|...-.|.+|+..++ ..+.+....+++..|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~-~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR-EGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc-cCccccCCCCCccCCC
Confidence 37999999999999999999999999999767666 458889999999999999999999885 1222455567777776
Q ss_pred Ecc
Q 005812 506 KAL 508 (676)
Q Consensus 506 ~a~ 508 (676)
+..
T Consensus 110 P~e 112 (275)
T KOG0115|consen 110 PME 112 (275)
T ss_pred hhh
Confidence 643
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0028 Score=67.07 Aligned_cols=79 Identities=24% Similarity=0.502 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCCC------HHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-Cee
Q 005812 215 QKWKLIIRNIPFKAK------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRP 287 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~------e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~ 287 (676)
-...|+|-|+|.--. ..-|..+|+++|.|....++.+..+| .+||.|++|.+..+|+.|++.|||..|. .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 446899999986432 23456789999999999999887666 9999999999999999999999999984 778
Q ss_pred EEEEEec
Q 005812 288 IAVDWAV 294 (676)
Q Consensus 288 i~v~~a~ 294 (676)
+.|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 8886543
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.89 E-value=0.0019 Score=47.35 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=42.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 275 (676)
+.|-|.|.+.+.. +.+..+|..||.|..+.+.. ..-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4688999997776 45666899999999998873 3357999999999999985
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.84 E-value=0.0032 Score=52.67 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=52.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEc-ccC------CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP-HNT------DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~-~~~------~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 287 (676)
..+.|.|-+.|+. ....|.++|++||.|.+..-. ++. .......+-.|+|.++.+|.+||.+ ||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4567899999988 457888999999999876411 110 0011345889999999999999996 999998865
Q ss_pred E-EEEEec
Q 005812 288 I-AVDWAV 294 (676)
Q Consensus 288 i-~v~~a~ 294 (676)
| -|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466653
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.81 E-value=0.0029 Score=46.42 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=42.3
Q ss_pred cEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHH
Q 005812 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASV 189 (676)
Q Consensus 122 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~ 189 (676)
+.|-|.|.+.+..+. +...|..||+|..+.++ ......||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---------------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---------------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---------------CCCcEEEEEECCHHHHHhhC
Confidence 468899999776654 66699999999999865 22456999999999999985
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.77 E-value=0.00086 Score=64.12 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCC--------CCcee----EEEEEecCHHHHHHHHHHhCCce
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT--------GLSKG----FAFVKFTCKRDAESAIQKFNGQK 282 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~--------~~~~g----~afV~f~~~~~A~~A~~~l~~~~ 282 (676)
....||+++||+.+...-|+++|+.||.|-+|.+.....+ |.+.+ -|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999998765433 22222 37899999999999999999999
Q ss_pred eCCeeE
Q 005812 283 FGKRPI 288 (676)
Q Consensus 283 ~~g~~i 288 (676)
|+|+.=
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 988753
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0063 Score=64.47 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=62.8
Q ss_pred CCeEEEcCCCCCCC------HHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec
Q 005812 425 QNTIFICNLPFDLD------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (676)
Q Consensus 425 ~~~l~V~nLp~~~t------eedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~ 498 (676)
...|+|-|+|---. ..-|..+|+++|.+..+.++.+...| ++||.|++|.+..+|..|++.|| |..|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~-----G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLN-----GKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcc-----cceec
Confidence 46899999985321 33456899999999999888886655 89999999999999999999999 88886
Q ss_pred -CcEEEEEE
Q 005812 499 -GRQLTVLK 506 (676)
Q Consensus 499 -gr~l~v~~ 506 (676)
.+++.|..
T Consensus 132 knHtf~v~~ 140 (698)
T KOG2314|consen 132 KNHTFFVRL 140 (698)
T ss_pred ccceEEeeh
Confidence 66777754
No 168
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.57 E-value=0.0032 Score=67.08 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=72.4
Q ss_pred hcCCCCCccccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChH
Q 005812 566 TKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQ 645 (676)
Q Consensus 566 ~~~~~p~~~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~ 645 (676)
...+.|..+..++.|||.||---+|.-.|+.++.. ..|.|... +| | .-+.-|||.|.+.+
T Consensus 433 ~RvpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~r--------tgg~Vee~-Wm-D----------kIKShCyV~yss~e 492 (718)
T KOG2416|consen 433 ERVPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGR--------TGGNVEEF-WM-D----------KIKSHCYVSYSSVE 492 (718)
T ss_pred ccCCCCCCCCccceEeeecccccchHHHHHHHHhh--------ccCchHHH-HH-H----------HhhcceeEecccHH
Confidence 34556666777889999999888899999999996 57777766 54 2 34678999999999
Q ss_pred HHHHHHHHHcCCCCCCCcccCccccccc
Q 005812 646 HALVALRVLNNNPSKLFYHHCFDAADAQ 673 (676)
Q Consensus 646 ~A~~Ai~~lng~~~~~~~~~~~~~~~~~ 673 (676)
+|...+.+|||-.|--+--+||+|.|+-
T Consensus 493 EA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 493 EAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred HHHHHHHHHhccccCCCCCceeEeeecc
Confidence 9999999999988876777899998863
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.0049 Score=59.16 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=80.9
Q ss_pred HHHHHHHHhCCCeecCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEE
Q 005812 184 SACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 263 (676)
Q Consensus 184 ~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV 263 (676)
-|..|-..|++....++.+.|+... ...|+|.||+..+..+.+.+.|+.||.|....+..| ..++..+-++|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~-------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v 77 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM-------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIV 77 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec-------cceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchh
Confidence 3566667799999999999997432 268999999999999999999999999998777666 36778888999
Q ss_pred EecCHHHHHHHHHHhCCce----eCCeeEEEEE
Q 005812 264 KFTCKRDAESAIQKFNGQK----FGKRPIAVDW 292 (676)
Q Consensus 264 ~f~~~~~A~~A~~~l~~~~----~~g~~i~v~~ 292 (676)
.|...-.|..|+..++-.- ..+++.-|..
T Consensus 78 ~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 78 EFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred hhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 9999999999999764322 3455555553
No 170
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.44 E-value=0.015 Score=46.10 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=44.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 280 (676)
+.+....+|+ +|..+...||.++|+.||.|. |..+.+. -|||...+.+.|..|+..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4455667777 999999999999999999987 6666542 399999999999999998753
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.35 E-value=0.018 Score=48.28 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=51.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEE-EeecC------CCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV-PVLHQ------VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~-i~~~~------~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l 497 (676)
...|.|-+.|.. ....|.++|++||.|.+.. +..+. .......+..|+|.++.+|.+||.. | |..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-N-----G~i~ 78 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-N-----GTIF 78 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-T-----TEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-C-----CeEE
Confidence 367999999987 6678999999999998763 00000 0012356889999999999999964 7 9999
Q ss_pred cCcEEE-EEEc
Q 005812 498 KGRQLT-VLKA 507 (676)
Q Consensus 498 ~gr~l~-v~~a 507 (676)
.|..|. |.+.
T Consensus 79 ~g~~mvGV~~~ 89 (100)
T PF05172_consen 79 SGSLMVGVKPC 89 (100)
T ss_dssp TTCEEEEEEE-
T ss_pred cCcEEEEEEEc
Confidence 997665 6665
No 172
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.33 E-value=0.0047 Score=63.39 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeec---CCC--CC--------cceEEEEEeCCHHHHHHHHHHcC
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH---QVT--KR--------PKGTGFLKFKTVEAATAAVSASK 488 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~---~~~--~~--------~~g~afV~F~t~~~A~~Al~~l~ 488 (676)
.-++++|.+.|||.+-.-+.|.++|+.+|.|..|+|..- ..+ +. .+-+|+|+|.+.+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346899999999999999999999999999999998765 222 22 25689999999999999999987
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.25 E-value=0.0037 Score=62.15 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCc--eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGL--VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
..-++||+||-|.+|++||.+.....|. +.++++..++.+|.++|||+|-..+....++-++.|-...|.|+.-.|.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3458999999999999999998887664 67788888989999999999999999999999999988999988777653
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.12 E-value=0.0051 Score=58.97 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=64.7
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCcc----ceEEEEeCCHHHHHHHHHHhCC
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKM----DASAVLYTTVKSACASVALLHQ 194 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~----g~afV~F~~~~~A~~A~~~l~~ 194 (676)
+....||+++||+.+...-|+++|+.||.|-.|.+-....+...+.. +.|.+. .-|+|+|.+...|......||+
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~-~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARK-RKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHh-hcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 35568999999999999999999999999999998766654332211 112222 2379999999999999999999
Q ss_pred CeecCeE
Q 005812 195 KEIKGGT 201 (676)
Q Consensus 195 ~~~~~~~ 201 (676)
..|+|+.
T Consensus 151 ~~Iggkk 157 (278)
T KOG3152|consen 151 TPIGGKK 157 (278)
T ss_pred CccCCCC
Confidence 9999873
No 175
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.00 E-value=0.019 Score=55.97 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=60.7
Q ss_pred CeEEEcCC--CCCCC---HHHHHHHHHhCCceeEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 426 NTIFICNL--PFDLD---NEEVKQRFSAFGEVVSFVPVLHQVTKRP-KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 426 ~~l~V~nL--p~~~t---eedl~~~F~~~G~v~~v~i~~~~~~~~~-~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
+.|.++|+ +-.++ ++++++-+.+||.|..|.|+..+.--.. ---.||+|...++|.+|+-.|| |.+|+|
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdln-----GRyFGG 356 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLN-----GRYFGG 356 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcC-----Cceecc
Confidence 45777776 33444 5688999999999999977766421111 2346999999999999999999 999999
Q ss_pred cEEEEEEcc
Q 005812 500 RQLTVLKAL 508 (676)
Q Consensus 500 r~l~v~~a~ 508 (676)
|.+...|..
T Consensus 357 r~v~A~Fyn 365 (378)
T KOG1996|consen 357 RVVSACFYN 365 (378)
T ss_pred eeeeheecc
Confidence 999988853
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.82 E-value=0.02 Score=55.85 Aligned_cols=66 Identities=26% Similarity=0.240 Sum_probs=54.1
Q ss_pred HHHHHHhhccCCceEEEEEcccCCCCCc-eeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 230 VNEIKDMFSPVGLVWNVYIPHNTDTGLS-KGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 230 e~~l~~~F~~~G~i~~v~i~~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
++++.+.+.+||.|..|.|...+..... .--.||+|...++|.+|+-.|||..|+|+.+..+|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4678889999999999988766532211 22379999999999999999999999999999988753
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.70 E-value=0.011 Score=63.08 Aligned_cols=80 Identities=14% Similarity=0.278 Sum_probs=65.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcc-CCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCee
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSP-VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRP 287 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~ 287 (676)
.....+.|+|.||-.-+|.-+|+.++.+ .|.|+..+|-+ -+..|||.|.+.++|.....+|||..+ .++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445789999999999999999999985 56666664433 456799999999999999999999988 5678
Q ss_pred EEEEEecCCC
Q 005812 288 IAVDWAVPKN 297 (676)
Q Consensus 288 i~v~~a~~~~ 297 (676)
|.+.|.....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 8888875543
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.66 E-value=0.0049 Score=59.31 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=52.4
Q ss_pred HHHHHhhc-cCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 231 NEIKDMFS-PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 231 ~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
++|...|+ +||.|+.+.|-.+. .-.-.|-+||.|..+++|++|+..||+..|.|++|..+++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 56666666 89999998776543 23356779999999999999999999999999999999873
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.47 E-value=0.0072 Score=58.21 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=52.3
Q ss_pred HHHHHHHH-hCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEcc
Q 005812 440 EEVKQRFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (676)
Q Consensus 440 edl~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~ 508 (676)
|||...|+ +||.|+.+.|-.+. .-...|-+||.|...++|++|+..|| +..+.|++|+..+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~ln-----nRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLN-----NRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHc-----CccccCCcceeeecC
Confidence 56666666 89999998655443 23457899999999999999999999 999999999999854
No 180
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.46 E-value=0.02 Score=58.95 Aligned_cols=71 Identities=25% Similarity=0.301 Sum_probs=55.8
Q ss_pred ccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCc--------ceEEEEEeCChHH
Q 005812 575 VSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYS--------RGVAFVEFTEHQH 646 (676)
Q Consensus 575 ~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s--------~g~afV~F~~~~~ 646 (676)
.+..+|.+-|||.+-.-+.|.++|+ .+|.|+.|+|+.--... .+..+.+ +-+|+|+|+..+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg---------~~G~IksIRIckPgaip-~d~r~~~~~~~~~~tk~~AlvEye~~~~ 298 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFG---------TVGSIKSIRICKPGAIP-EDVRGFPKKYFELQTKECALVEYEEVEA 298 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhh---------cccceeeeeecCCCCCC-cccccCCccchhhhhhhhhhhhhhhhHH
Confidence 3557899999999999999999999 59999999998661110 1111222 4589999999999
Q ss_pred HHHHHHHHc
Q 005812 647 ALVALRVLN 655 (676)
Q Consensus 647 A~~Ai~~ln 655 (676)
|.+|.+.||
T Consensus 299 A~KA~e~~~ 307 (484)
T KOG1855|consen 299 ARKARELLN 307 (484)
T ss_pred HHHHHHhhc
Confidence 999999984
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.36 E-value=0.086 Score=46.98 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=52.9
Q ss_pred CCCCcEEEEcCCC------CCCCH---HHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 005812 213 KTQKWKLIIRNIP------FKAKV---NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (676)
Q Consensus 213 ~~~~~~v~V~nLp------~~~~e---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 283 (676)
.++..+|.|.=+. ...++ .+|.+.|..||.+.-+++.-+ --+|+|.+...|-+|+. ++|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 3455677777555 12332 367888999999888887754 27999999999999999 699999
Q ss_pred CCeeEEEEEecCCC
Q 005812 284 GKRPIAVDWAVPKN 297 (676)
Q Consensus 284 ~g~~i~v~~a~~~~ 297 (676)
+|+.|.|....|..
T Consensus 95 ~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 95 NGRTLKIRLKTPDW 108 (146)
T ss_dssp TTEEEEEEE-----
T ss_pred CCEEEEEEeCCccH
Confidence 99999999876643
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.33 E-value=0.096 Score=39.43 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=45.4
Q ss_pred CeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHH
Q 005812 578 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVL 654 (676)
Q Consensus 578 ~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~l 654 (676)
..|+|+++. .++.++|+.+|.+|+ ......+|.++-| ..|-|-|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~------~~~~~~~IEWIdD-------------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYF------DEEGPFRIEWIDD-------------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhc------ccCCCceEEEecC-------------CcEEEEECCHHHHHHHHHcC
Confidence 579999996 689999999999752 1123456888755 37899999999999999875
No 183
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.20 E-value=0.029 Score=56.01 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=66.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCC--ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
.++||+||-|-+|++||.+.....| .+..++++.+..+|.++|||+|-..+.....+.++-|- ...|.|..-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP-----~k~iHGQ~P~ 155 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP-----TKTIHGQSPT 155 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc-----cceecCCCCe
Confidence 5899999999999999999998877 46667888888899999999999999988889998888 8899888555
Q ss_pred EEEc
Q 005812 504 VLKA 507 (676)
Q Consensus 504 v~~a 507 (676)
|...
T Consensus 156 V~~~ 159 (498)
T KOG4849|consen 156 VLSY 159 (498)
T ss_pred eecc
Confidence 5443
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.70 E-value=0.11 Score=41.25 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=44.3
Q ss_pred CCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcC
Q 005812 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (676)
Q Consensus 577 ~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng 656 (676)
+.-||--..|..+-..||.++|+ +||.|. |.++-| ..|||.....+.|..|+..++-
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFs---------pfG~I~-VsWi~d-------------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFS---------PFGQIY-VSWIND-------------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCC---------CCCCEE-EEEECT-------------TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEeCchHhhhhhHHHHhc---------cCCcEE-EEEEcC-------------CcEEEEeecHHHHHHHHHHhcc
Confidence 33455545999999999999999 799986 888754 5899999999999999999975
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.63 E-value=0.16 Score=45.32 Aligned_cols=56 Identities=32% Similarity=0.455 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccC
Q 005812 440 EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (676)
Q Consensus 440 edl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~ 509 (676)
.+|.+.|..||.+.-++++-+ .-+|+|.+-+.|.+|+ .++ |..++|+.|.|....+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~d-----g~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLD-----GIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGC-----CSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccC-----CcEECCEEEEEEeCCc
Confidence 377888999999888776532 3689999999999998 578 9999999999998543
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.48 E-value=0.22 Score=37.56 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhC----CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAF----GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~----G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l 487 (676)
..|+|+|+. +.+.+||+.+|..| + ...|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 489999996 68899999999999 4 3455555442 3679999999999999865
No 187
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.27 E-value=0.71 Score=45.73 Aligned_cols=207 Identities=16% Similarity=0.202 Sum_probs=124.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecC-------CCCCcceEEEEEeCCHHHHHH----HHHHcCCCC
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ-------VTKRPKGTGFLKFKTVEAATA----AVSASKTTS 491 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~-------~~~~~~g~afV~F~t~~~A~~----Al~~l~~~~ 491 (676)
-.++.|.+.|+..+++--.+...|-+||+|++|+++.+. ..........+.|-+.+.+.. .++.|+++
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf- 91 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF- 91 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH-
Confidence 346889999999999999999999999999999998765 122345678899999887653 34555533
Q ss_pred CCCeeecCcEEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCC-C
Q 005812 492 GLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ-S 570 (676)
Q Consensus 492 ~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 570 (676)
...+....|.|.+..-+-...... +....+ + .++. ...+. +
T Consensus 92 --K~~L~S~~L~lsFV~l~y~~~~~~-------~~~~~~------------------~--~~~~---------~~~L~~~ 133 (309)
T PF10567_consen 92 --KTKLKSESLTLSFVSLNYQKKTDP-------NDEEAD------------------F--SDYL---------VASLQYN 133 (309)
T ss_pred --HHhcCCcceeEEEEEEeccccccc-------cccccc------------------h--hhHH---------hhhhhhe
Confidence 467778888888865321100000 000000 0 0000 00011 0
Q ss_pred CCccccCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHH
Q 005812 571 PNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVA 650 (676)
Q Consensus 571 p~~~~~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~A 650 (676)
--...+.+.|.|- +...+..+++..---.+.....-+-| .|++|.|+--... ...=+.-||.+.|-+..-|...
T Consensus 134 i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RY-VlEsIDlVna~~~----~~~Fp~~YaILtFlnIsMAiEV 207 (309)
T PF10567_consen 134 IINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRY-VLESIDLVNADEP----SKHFPKNYAILTFLNISMAIEV 207 (309)
T ss_pred eecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceE-EEEEEEEeccCcc----cccCCcceEEEeehhHHhHHHH
Confidence 0011133557665 44555443332222222221111112 5777888743221 2334567999999999999999
Q ss_pred HHHHcCCCCCCCcccCcccccccc
Q 005812 651 LRVLNNNPSKLFYHHCFDAADAQC 674 (676)
Q Consensus 651 i~~lng~~~~~~~~~~~~~~~~~~ 674 (676)
+.-|..+..-.|=.+|..|+-+.+
T Consensus 208 ~dYlk~~~~~~~Iskc~fVs~~~~ 231 (309)
T PF10567_consen 208 LDYLKSNSKKLGISKCFFVSVQPH 231 (309)
T ss_pred HHHHHhcccccCcceEEEEeccCc
Confidence 999987766678889999887664
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.27 E-value=0.092 Score=49.34 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=52.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcc-CCce---EEEE--EcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC---
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSP-VGLV---WNVY--IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG--- 284 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~-~G~i---~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--- 284 (676)
.....|.|++||+++|++++++.++. ++.- ..+. ..........-.-|||.|.+.+++......++|..|.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999998887 6665 2333 2221111223446999999999999999999998872
Q ss_pred C--eeEEEEEecC
Q 005812 285 K--RPIAVDWAVP 295 (676)
Q Consensus 285 g--~~i~v~~a~~ 295 (676)
| ....|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 3556777744
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.44 E-value=0.34 Score=42.59 Aligned_cols=71 Identities=27% Similarity=0.283 Sum_probs=53.6
Q ss_pred CCCeEEEcCCCCCC----CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 424 LQNTIFICNLPFDL----DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 424 ~~~~l~V~nLp~~~----teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
+-.+|.|+=|...+ +-..|....+.||+|.+|... | +..|.|.|.+..+|-+|+.++. ...-|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~------s~~pg 151 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQ------SRAPG 151 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhc------CCCCC
Confidence 44688887665554 334455667789999998643 3 5679999999999999999997 46678
Q ss_pred cEEEEEEc
Q 005812 500 RQLTVLKA 507 (676)
Q Consensus 500 r~l~v~~a 507 (676)
..+.+.|-
T Consensus 152 tm~qCsWq 159 (166)
T PF15023_consen 152 TMFQCSWQ 159 (166)
T ss_pred ceEEeecc
Confidence 88888884
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.18 E-value=0.036 Score=55.78 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=64.7
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHHhCCceeEEEEeecCC--CC-CcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 426 NTIFICNLPFDLDNEEVK---QRFSAFGEVVSFVPVLHQV--TK-RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~---~~F~~~G~v~~v~i~~~~~--~~-~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
+-+||-+|+..+..+.+. ++|.+||.|..|.+..+.. .+ ....-++|+|...++|..||...+ |+.++|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~-----g~~~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD-----GFVDDG 152 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh-----hHHhhh
Confidence 568888899887666664 4899999999987766541 11 112338999999999999999999 999999
Q ss_pred cEEEEEEccCchhh
Q 005812 500 RQLTVLKALDKKLA 513 (676)
Q Consensus 500 r~l~v~~a~~k~~~ 513 (676)
+.|...+...+-..
T Consensus 153 ~~lka~~gttkycs 166 (327)
T KOG2068|consen 153 RALKASLGTTKYCS 166 (327)
T ss_pred hhhHHhhCCCcchh
Confidence 99988887766543
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.64 E-value=0.16 Score=47.73 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHh-CCce---eEEEEeecC--CCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSA-FGEV---VSFVPVLHQ--VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~-~G~v---~~v~i~~~~--~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~ 498 (676)
...|.|++||+..|++++.+.++. ++.- .++.-.... .......-|||.|.+.+++......++ |..|-
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~-----g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD-----GHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT-----TEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC-----CcEEE
Confidence 468999999999999999997777 6655 333211221 111234569999999999999999999 76664
Q ss_pred C-----cEEEEEEccCc
Q 005812 499 G-----RQLTVLKALDK 510 (676)
Q Consensus 499 g-----r~l~v~~a~~k 510 (676)
+ .+-.|.+|.-.
T Consensus 82 D~kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 82 DSKGNEYPAVVEFAPYQ 98 (176)
T ss_dssp -TTS-EEEEEEEE-SS-
T ss_pred CCCCCCcceeEEEcchh
Confidence 2 25567776653
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.30 E-value=0.39 Score=51.36 Aligned_cols=94 Identities=18% Similarity=0.300 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCCeecCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcc--CCceEEEEEcccCCCCCceeE
Q 005812 183 KSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP--VGLVWNVYIPHNTDTGLSKGF 260 (676)
Q Consensus 183 ~~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~ 260 (676)
+--..++...-+..+..+-..|+ .....|.|+++-||..+..++|+.+|+. +-.+.+|.+-.+. +
T Consensus 148 dLI~Evlresp~VqvDekgekVr------p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n- 214 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVR------PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N- 214 (684)
T ss_pred HHHHHHHhcCCCceeccCccccc------cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-
Confidence 33345556566666666666665 3456788999999999999999999985 5667888876642 2
Q ss_pred EEEEecCHHHHHHHHHHhCC--ceeCCeeEE
Q 005812 261 AFVKFTCKRDAESAIQKFNG--QKFGKRPIA 289 (676)
Q Consensus 261 afV~f~~~~~A~~A~~~l~~--~~~~g~~i~ 289 (676)
=||+|.+..||+.|.+.|.- ..|.|+.|-
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 48999999999999886642 235555543
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.98 E-value=0.081 Score=53.34 Aligned_cols=82 Identities=15% Similarity=0.275 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HhhccCCceEEEEEcccCC----CCCceeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIK---DMFSPVGLVWNVYIPHNTD----TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~---~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 286 (676)
....-+||-+|+.....+.+. +.|.+||.|..|.+.+++. .+.. .-+||+|...++|..||...+|..+.|+
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhh
Confidence 344678888998886655553 4889999999999888652 1211 2289999999999999999999999999
Q ss_pred eEEEEEecCC
Q 005812 287 PIAVDWAVPK 296 (676)
Q Consensus 287 ~i~v~~a~~~ 296 (676)
.++..+...+
T Consensus 154 ~lka~~gttk 163 (327)
T KOG2068|consen 154 ALKASLGTTK 163 (327)
T ss_pred hhHHhhCCCc
Confidence 9888776554
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.71 E-value=0.53 Score=46.62 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=56.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee-EEEEEec
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP-IAVDWAV 294 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~-i~v~~a~ 294 (676)
..-|-|-++|+.-. ..|..+|++||.|....... +..|-+|.|.+.-+|++||.+ ||..|+|.. |-|....
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 56788888887655 57888999999998776553 445899999999999999996 999998754 4565544
Q ss_pred CC
Q 005812 295 PK 296 (676)
Q Consensus 295 ~~ 296 (676)
.+
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 43
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.38 E-value=2.5 Score=36.18 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=49.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC-CceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 284 (676)
...+.+-..|..++.++|..+.+.+ ..|..++|+++. ..++--+++.|.+.++|......+||+.|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3445555556666667777666664 347788998863 235667999999999999999999999873
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.21 E-value=0.96 Score=48.52 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=49.0
Q ss_pred CeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHc
Q 005812 578 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 655 (676)
Q Consensus 578 ~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~ln 655 (676)
|.|.+|-||..+..++++.||... .+..+.+|.+-.+ .-.||.|.+..||++|+..|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~e-------ncPk~iscefa~N-------------~nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGE-------NCPKVISCEFAHN-------------DNWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccC-------CCCCceeeeeeec-------------CceEEEeecchhHHHHHHHHH
Confidence 679999999999999999999842 4678888888644 357999999999999988773
No 197
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.55 E-value=1 Score=39.64 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=47.6
Q ss_pred CcEEEEcCCCcc----ccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCe
Q 005812 121 ARTVIIGGLLNA----DMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (676)
Q Consensus 121 ~~~l~V~nLp~~----~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~ 196 (676)
-.||.|.=|... -+...+....+.||+|.+|.+. .+..|.|.|.+..+|.+|+.++.. .
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----------------GrqsavVvF~d~~SAC~Av~Af~s-~ 148 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----------------GRQSAVVVFKDITSACKAVSAFQS-R 148 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----------------CCceEEEEehhhHHHHHHHHhhcC-C
Confidence 347777655444 4455566778899999999943 345699999999999999998766 3
Q ss_pred ecCeEEE
Q 005812 197 IKGGTVW 203 (676)
Q Consensus 197 ~~~~~i~ 203 (676)
..|..+.
T Consensus 149 ~pgtm~q 155 (166)
T PF15023_consen 149 APGTMFQ 155 (166)
T ss_pred CCCceEE
Confidence 3444443
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.52 E-value=0.71 Score=43.55 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=46.0
Q ss_pred CHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeeEEEEEecCC
Q 005812 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 229 ~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~i~v~~a~~~ 296 (676)
..+.|+.+|..|+.+......+. -+-..|.|.+.+.|.+|...|+ +..+.|..++|.++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999999888877763 2448999999999999999999 89999999999998543
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.39 E-value=2.7 Score=35.96 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=48.3
Q ss_pred CeEEEecC-CcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcC
Q 005812 578 TRLVIYNL-PKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (676)
Q Consensus 578 ~~l~V~nl-p~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng 656 (676)
+.|.|--. |..++-++|..+... .-..|..++|+++.. .++=.+.+.|.++++|..=...+||
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~--------~~~~i~~~riird~~--------pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAP--------FREDIEHIRIIRDGT--------PNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhc--------ccccEEEEEEeeCCC--------CceEEEEEEECCHHHHHHHHHHhCC
Confidence 44444444 445555666555443 245788899998842 5678999999999999999999999
Q ss_pred CCC
Q 005812 657 NPS 659 (676)
Q Consensus 657 ~~~ 659 (676)
.+.
T Consensus 77 k~F 79 (110)
T PF07576_consen 77 KPF 79 (110)
T ss_pred Ccc
Confidence 987
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.93 E-value=1.6 Score=33.50 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=42.9
Q ss_pred CCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 227 ~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.++-++++..+..|+-. +|. .+ ..|| ||.|.+..+|++|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~--~d-----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR--DD-----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE--ec-----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999743 233 33 2354 99999999999999999999988777654
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.70 E-value=2.1 Score=32.82 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 436 DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 436 ~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++-++++..+..|+- .. |..++ .|| ||.|.+..+|.++....+ |..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~-----~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-----TGF-YIVFNDSKEAERCFRAED-----GTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-----CEE-EEEECChHHHHHHHHhcC-----CCEEEEEEEEe
Confidence 4788999999999973 23 33332 455 899999999999999999 88888877665
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.52 E-value=0.45 Score=52.25 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=62.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
..++..++||+|+-..+..+-++.+...+|.|.++... -|||..|..+..+.+|+..++ ...++|.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t-----~~~~~~~ 101 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLT-----ELNIDDQ 101 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhc-----ccCCCcc
Confidence 44456799999999999999999999999999887543 189999999999999999999 7888888
Q ss_pred EEEEEE
Q 005812 501 QLTVLK 506 (676)
Q Consensus 501 ~l~v~~ 506 (676)
.+.+..
T Consensus 102 kl~~~~ 107 (668)
T KOG2253|consen 102 KLIENV 107 (668)
T ss_pred hhhccc
Confidence 887755
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.42 E-value=0.33 Score=51.03 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 424 LQNTIFICNLPFDL-DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 424 ~~~~l~V~nLp~~~-teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
..+.|-+.-.|+.. +..+|..+|.+||.|..|.+-. +.-.|.|+|.+..+|-+|-+ .+ +..|++|.|
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~------~~~~a~vTF~t~aeag~a~~-s~-----~avlnnr~i 438 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY------SSLHAVVTFKTRAEAGEAYA-SH-----GAVLNNRFI 438 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC------chhhheeeeeccccccchhc-cc-----cceecCcee
Confidence 34566677777766 5789999999999999986532 24468999999999977764 45 899999999
Q ss_pred EEEEccC
Q 005812 503 TVLKALD 509 (676)
Q Consensus 503 ~v~~a~~ 509 (676)
+|.|-.+
T Consensus 439 Kl~whnp 445 (526)
T KOG2135|consen 439 KLFWHNP 445 (526)
T ss_pred EEEEecC
Confidence 9999766
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.13 E-value=0.29 Score=51.44 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=61.9
Q ss_pred CcEEEEcCCCCCC-CHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 216 KWKLIIRNIPFKA-KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 216 ~~~v~V~nLp~~~-~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
.+.+-+.-.|+.+ +-++|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|.++.|+|.|..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 4556666667665 46899999999999999988664 2349999999999988877 48999999999999998
Q ss_pred CCCC
Q 005812 295 PKNI 298 (676)
Q Consensus 295 ~~~~ 298 (676)
+...
T Consensus 445 ps~~ 448 (526)
T KOG2135|consen 445 PSPV 448 (526)
T ss_pred CCcc
Confidence 8553
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.45 E-value=2.2 Score=42.45 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=50.3
Q ss_pred CcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 005812 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (676)
Q Consensus 121 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~ 200 (676)
..-|-|-++|+.... -|..+|..||+|.+... +.+-.+-+|.|.+.-+|.+||. .||+.|.|.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~---------------~~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVT---------------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeec---------------CCCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 345777788776543 47789999999998872 2445678999999999999998 588888876
Q ss_pred EE
Q 005812 201 TV 202 (676)
Q Consensus 201 ~i 202 (676)
.+
T Consensus 260 vm 261 (350)
T KOG4285|consen 260 VM 261 (350)
T ss_pred eE
Confidence 54
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.49 E-value=1.2 Score=36.31 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=44.3
Q ss_pred EEEEeCCHHHHHHHHHHh-CCCeecCeEEEEecCC--C-------CCCCCCCcEEEEcCCCCCCCHHHHHHhhc
Q 005812 175 SAVLYTTVKSACASVALL-HQKEIKGGTVWARQLG--G-------EGSKTQKWKLIIRNIPFKAKVNEIKDMFS 238 (676)
Q Consensus 175 afV~F~~~~~A~~A~~~l-~~~~~~~~~i~v~~~~--~-------~~~~~~~~~v~V~nLp~~~~e~~l~~~F~ 238 (676)
|+|.|..+.-|+.-+..- +.-.+.+..+.++..+ . -....+.++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999988732 2234455555443221 1 11346778999999999999999987543
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.50 E-value=3.5 Score=43.37 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=58.4
Q ss_pred CCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcC
Q 005812 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (676)
Q Consensus 577 ~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng 656 (676)
.+.|+|-.+|..+|-.||..|+..+ .-.|..++|+||.. +.+=..++.|.+.++|..-...+||
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~--------~~~I~~irivRd~~--------pnrymvLIkFr~q~da~~Fy~efNG 137 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASF--------IKQISDIRIVRDGM--------PNRYMVLIKFRDQADADTFYEEFNG 137 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHH--------hhhhheeEEeecCC--------CceEEEEEEeccchhHHHHHHHcCC
Confidence 4679999999999999999999863 45688899999753 5677899999999999999999999
Q ss_pred CCC
Q 005812 657 NPS 659 (676)
Q Consensus 657 ~~~ 659 (676)
.+.
T Consensus 138 k~F 140 (493)
T KOG0804|consen 138 KQF 140 (493)
T ss_pred CcC
Confidence 865
No 208
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.94 E-value=1.3 Score=36.19 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.0
Q ss_pred EEEEecCHHHHHHHHHHhCCc-eecCeEEEEeec
Q 005812 14 GYVQFAVMEDANRAVEMKNGT-SVGGRKIGVKHA 46 (676)
Q Consensus 14 afV~F~~~edA~~Al~~~~g~-~i~gr~i~v~~a 46 (676)
|+|+|..++=|++-++.-... .+.+..++|..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 789999999999999883333 566777777554
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.67 E-value=4.1 Score=38.51 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccC
Q 005812 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (676)
Q Consensus 438 teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~ 509 (676)
..+.|+++|..|+.+..+.+++. -+-..|.|.+.++|.+|...|+.. +..+.|..+.|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~---~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWD---GTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST-----TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhccc---ccccCCCceEEEEccc
Confidence 45789999999999888766533 345789999999999999997621 5789999999999854
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.35 E-value=5.7 Score=41.91 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=58.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
+..|+|-.+|..++--||..|+..|- .|..++|++|.. ..+-.++|.|.+..+|......+| |..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efN-----Gk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFN-----GKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcC-----CCcCCC
Confidence 68999999999999999999999864 688899998642 234568999999999999999999 888864
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.65 E-value=11 Score=29.71 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=35.7
Q ss_pred CCCCHHHHHHhhccCCc-----eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 226 FKAKVNEIKDMFSPVGL-----VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 226 ~~~~e~~l~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
..++..+|..++...+. |-.|.|.. .|+||+-... .|..++..|++..+.|+.+.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35777888888877644 55677754 3689988655 789999999999999999999864
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=74.00 E-value=2.3 Score=48.13 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=65.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--CCeeEEEEEecC
Q 005812 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVP 295 (676)
Q Consensus 218 ~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~~a~~ 295 (676)
+.++-|.+-..+..-|..+|+.||.|.+.+..++- ..|.|+|.+.+.|..|+.+|+|..+ -|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 33444555567788899999999999999988753 3599999999999999999999986 588899999988
Q ss_pred CCCCCcC
Q 005812 296 KNIYSSG 302 (676)
Q Consensus 296 ~~~~~~~ 302 (676)
-..+.+.
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 7777665
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.50 E-value=7.8 Score=30.51 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHhCCce-----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEc
Q 005812 435 FDLDNEEVKQRFSAFGEV-----VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 507 (676)
Q Consensus 435 ~~~teedl~~~F~~~G~v-----~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a 507 (676)
..++..+|..++...+.| -.+.|. ..|+||+-.. +.|..++..|+ +..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~-----~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALN-----GKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHT-----T--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhc-----CCCCCCeeEEEEEC
Confidence 367888999999887544 345543 3478999876 48899999999 99999999999875
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.90 E-value=18 Score=39.61 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=62.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhC----CceeEEEEeecCC----------CCC---------------------
Q 005812 422 DELQNTIFICNLPFD-LDNEEVKQRFSAF----GEVVSFVPVLHQV----------TKR--------------------- 465 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~-~teedl~~~F~~~----G~v~~v~i~~~~~----------~~~--------------------- 465 (676)
...+++|-|.||.|+ +..+||.-+|+.| |.|.+|.|..... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445789999999985 7899999999987 6899988764321 111
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC--cEEEEEE
Q 005812 466 ----------------PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLK 506 (676)
Q Consensus 466 ----------------~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g--r~l~v~~ 506 (676)
..-||.|+|.+...|.+....++ |+.|.. ..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CD-----G~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECD-----GIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcC-----cceeccccceeeeee
Confidence 23479999999999999999999 999974 4555555
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=68.80 E-value=3.4 Score=46.89 Aligned_cols=74 Identities=22% Similarity=0.202 Sum_probs=60.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee--cCcEEEE
Q 005812 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL--KGRQLTV 504 (676)
Q Consensus 427 ~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l--~gr~l~v 504 (676)
...+.|.+-..+---|..+|+.||.|.+.+-+++ -..|.|+|.+.+.|..|+.+++ |+.+ -|-+.+|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~-----gkevs~~g~Ps~V 368 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQ-----GKEVSVTGAPSRV 368 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhc-----CCcccccCCceeE
Confidence 4555666777888899999999999999876655 3479999999999999999999 6554 5888999
Q ss_pred EEccCch
Q 005812 505 LKALDKK 511 (676)
Q Consensus 505 ~~a~~k~ 511 (676)
.+|+.-+
T Consensus 369 ~~ak~~~ 375 (1007)
T KOG4574|consen 369 SFAKTLP 375 (1007)
T ss_pred Eeccccc
Confidence 9988644
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=67.24 E-value=4.4 Score=44.80 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=61.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
......+|||+|+...+..+-++.+...+|.|.++.... |||+.|.....+.+|+..++-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 445678999999999999999999999999887765443 89999999999999999988888888877765
Q ss_pred E
Q 005812 292 W 292 (676)
Q Consensus 292 ~ 292 (676)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 217
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=61.78 E-value=11 Score=34.31 Aligned_cols=79 Identities=9% Similarity=-0.028 Sum_probs=55.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEecCCCCCC------CCCCcEEEEcCCCCC-CCHHHHHHhhccCCceE
Q 005812 172 MDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS------KTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVW 244 (676)
Q Consensus 172 ~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~~~~~~~~------~~~~~~v~V~nLp~~-~~e~~l~~~F~~~G~i~ 244 (676)
.++..++|.+.+++.+++. .....+.+..+.+..-.+... .....-|.|.|||.. .+++-++.+-+.+|.+.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 5678999999999999977 344455666555543321111 112334667799998 77888899999999999
Q ss_pred EEEEccc
Q 005812 245 NVYIPHN 251 (676)
Q Consensus 245 ~v~i~~~ 251 (676)
.+.....
T Consensus 134 ~vD~~t~ 140 (153)
T PF14111_consen 134 EVDENTL 140 (153)
T ss_pred EEEcCCC
Confidence 8876543
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.83 E-value=50 Score=36.32 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=62.7
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHhhccC----CceEEEEEcccCC----------CC----------------------
Q 005812 213 KTQKWKLIIRNIPFK-AKVNEIKDMFSPV----GLVWNVYIPHNTD----------TG---------------------- 255 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~-~~e~~l~~~F~~~----G~i~~v~i~~~~~----------~~---------------------- 255 (676)
....++|-|-|+.|+ +...+|.-+|+.| |.|.+|.|..... .|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 8889999999875 5788888754210 11
Q ss_pred ---------------CceeEEEEEecCHHHHHHHHHHhCCceeC--CeeEEEEEe
Q 005812 256 ---------------LSKGFAFVKFTCKRDAESAIQKFNGQKFG--KRPIAVDWA 293 (676)
Q Consensus 256 ---------------~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~i~v~~a 293 (676)
...-||.|+|.+.+.|......++|..|. +..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 12348999999999999999999999996 556666665
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=53.13 E-value=12 Score=34.63 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=54.2
Q ss_pred CeEEEcCCCCCCC-----HHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 426 NTIFICNLPFDLD-----NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 426 ~~l~V~nLp~~~t-----eedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
.++.+++++..+. .....++|..|-......++ ++.+...|.|.+++.|..|...++ +..|.|.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~-----~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLH-----STSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhh-----hcccCCC
Confidence 5788999987653 23345567666554444333 235567789999999999999999 8999888
Q ss_pred -EEEEEEccCc
Q 005812 501 -QLTVLKALDK 510 (676)
Q Consensus 501 -~l~v~~a~~k 510 (676)
.+..-++++-
T Consensus 80 ~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 80 NELKLYFAQPG 90 (193)
T ss_pred ceEEEEEccCC
Confidence 8888888764
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=51.94 E-value=7.5 Score=38.08 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=51.3
Q ss_pred CeEEEecCCcc------------cCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCC----cceEE----
Q 005812 578 TRLVIYNLPKS------------MTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHY----SRGVA---- 637 (676)
Q Consensus 578 ~~l~V~nlp~~------------~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~----s~g~a---- 637 (676)
.+|++-+||-. .+++.|+..|. +||.|..|.|+.-..-...++... -+|||
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~e---------afg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~d 220 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFE---------AFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGD 220 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHH---------HhccceecCCcccchhHHHhcCccccceeeccccCcc
Confidence 56777777643 36788999999 699999999873221110111111 23443
Q ss_pred -----EEEeCChHHHHHHHHHHcCCCCCCCcccCc
Q 005812 638 -----FVEFTEHQHALVALRVLNNNPSKLFYHHCF 667 (676)
Q Consensus 638 -----fV~F~~~~~A~~Ai~~lng~~~~~~~~~~~ 667 (676)
+|.|...-.-..||.+|.|..+.+-...++
T Consensus 221 lffeayvqfmeykgfa~amdalr~~k~akk~d~~f 255 (445)
T KOG2891|consen 221 LFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDGF 255 (445)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCcc
Confidence 466776667778899998888755444443
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=49.92 E-value=22 Score=32.25 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=30.0
Q ss_pred eeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 258 KGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 258 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.++..++|.+.+++.+++.. ....+.|..+.+....|
T Consensus 55 ~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSP 91 (153)
T ss_pred CCeEEEEEEeccceeEEEec-ccccccccchhhhhhcc
Confidence 46799999999999999984 66677888888876654
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=49.31 E-value=64 Score=32.07 Aligned_cols=49 Identities=6% Similarity=0.005 Sum_probs=36.0
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCe-EEEEeeCCchhhhhcccccCCCccceEEEEeCCHH
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTV-CSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK 183 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v-~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~ 183 (676)
...-|+++|||.++-..||+..+.+.|.+ .++. +.-..|-||++|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~is---------------wkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSIS---------------WKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEe---------------eecCCcceeEecCCcc
Confidence 34469999999999999999999987632 3333 2234667999998743
No 223
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=48.69 E-value=29 Score=29.45 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHhhcc---CCceEEEEEcccCCCCCceeEEEEEecCH
Q 005812 225 PFKAKVNEIKDMFSP---VGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268 (676)
Q Consensus 225 p~~~~e~~l~~~F~~---~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 268 (676)
|+.+|-.+++++|+. |-.|.+-.+.+|.--.-+-..||..|...
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 567899999999985 66666655555432223455788888654
No 224
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=45.77 E-value=33 Score=34.41 Aligned_cols=84 Identities=10% Similarity=0.226 Sum_probs=61.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccC-------CCCCceeEEEEEecCHHHHHHHH----HHhC
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT-------DTGLSKGFAFVKFTCKRDAESAI----QKFN 279 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~-------~~~~~~g~afV~f~~~~~A~~A~----~~l~ 279 (676)
......+.|.+.|+...++-..+...|-+||+|++|.++.+. ...+...-..+.|-+.+.+-... ++|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999998765 11233455789999988765543 2332
Q ss_pred C--ceeCCeeEEEEEec
Q 005812 280 G--QKFGKRPIAVDWAV 294 (676)
Q Consensus 280 ~--~~~~g~~i~v~~a~ 294 (676)
- ..+....+.|.+..
T Consensus 90 EfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHhcCCcceeEEEEE
Confidence 2 23566777777764
No 225
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=44.83 E-value=23 Score=32.86 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=53.6
Q ss_pred cEEEEcCCCCCCC-----HHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe-eEEE
Q 005812 217 WKLIIRNIPFKAK-----VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR-PIAV 290 (676)
Q Consensus 217 ~~v~V~nLp~~~~-----e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~i~v 290 (676)
..+++.+++..+- ......+|..|....-.++.+ +.++.-|.|.+++.|..|..+++...|.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 3567777766532 223345666666555555555 556788999999999999999999999887 7888
Q ss_pred EEecCCC
Q 005812 291 DWAVPKN 297 (676)
Q Consensus 291 ~~a~~~~ 297 (676)
.++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7776543
No 226
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=44.29 E-value=41 Score=26.02 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=46.7
Q ss_pred HHHHHHHHhCC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCc
Q 005812 440 EEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (676)
Q Consensus 440 edl~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k 510 (676)
++|.+-|...| .|..+.-+....++.+...-||+.....+... .++ -..|++..|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~-----Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYK-----IKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eee-----hHhhCCeEEEEecCCCC
Confidence 57888888888 67788777776677778888999987765333 344 56888999999886543
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.99 E-value=91 Score=32.65 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=45.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~ 486 (676)
.....+.|-|.++|...-.+||...|+.|+.-- ++|++-. ...||-.|.+...|..||..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kg-fdIkWvD-----dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKG-FDIKWVD-----DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCC-ceeEEee-----cceeEEeecchHHHHHHhhc
Confidence 333557999999999999999999999997432 2233221 34689999999999999864
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=38.92 E-value=66 Score=27.87 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=33.6
Q ss_pred CeEEEecCCccc---------CHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHH
Q 005812 578 TRLVIYNLPKSM---------TEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHAL 648 (676)
Q Consensus 578 ~~l~V~nlp~~~---------te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~ 648 (676)
..+.|.|+|... +.++|++.|+. |..++ ++.+.++ .-+.|++.|+|..--...
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~---------f~p~k-v~~l~~~--------~gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAE---------FNPLK-VKPLYGK--------QGHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH------------SE-EEEEEET--------TEEEEEEEEE--SSHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHh---------cCCce-eEECcCC--------CCCcEEEEEEECCChHHH
Confidence 578889996643 56889999995 66664 7676664 246899999999875555
Q ss_pred HHHHHH
Q 005812 649 VALRVL 654 (676)
Q Consensus 649 ~Ai~~l 654 (676)
+--..|
T Consensus 71 ~~A~~l 76 (116)
T PF03468_consen 71 KNAMRL 76 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 229
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=38.25 E-value=52 Score=25.42 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHHhCC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCc
Q 005812 440 EEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (676)
Q Consensus 440 edl~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k 510 (676)
.+|.+-|..+| .+..+.-|....++.+...-+|+.....+-.. -++ -..|+|+.+.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~-----ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILN-----IKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEe-----ehhhCCeeEEEecCccc
Confidence 46888899888 67788777777667777888888876543333 344 56888999999875543
No 230
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.53 E-value=43 Score=32.98 Aligned_cols=35 Identities=23% Similarity=0.522 Sum_probs=29.2
Q ss_pred CeEEEcCCCCCC------------CHHHHHHHHHhCCceeEEEEeec
Q 005812 426 NTIFICNLPFDL------------DNEEVKQRFSAFGEVVSFVPVLH 460 (676)
Q Consensus 426 ~~l~V~nLp~~~------------teedl~~~F~~~G~v~~v~i~~~ 460 (676)
.+|++.+||-.| +++-|+..|..||.|..|.|+..
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 588998888654 57889999999999999988754
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=36.32 E-value=45 Score=28.93 Aligned_cols=51 Identities=20% Similarity=0.353 Sum_probs=29.2
Q ss_pred CeEEEcCCCCC---------CCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHH
Q 005812 426 NTIFICNLPFD---------LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEA 479 (676)
Q Consensus 426 ~~l~V~nLp~~---------~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~ 479 (676)
.++.|-|+|.. .+-++|.+.|+.|..++ ++.+.+.. -++|+++|.|...-.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChH
Confidence 47788888654 35689999999998775 55666643 468999999977543
No 232
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.18 E-value=73 Score=33.10 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=23.1
Q ss_pred EEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEcc
Q 005812 470 GFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (676)
Q Consensus 470 afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~ 508 (676)
|||+|++..+|+.|++.+. ...++.+.+..|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~-------~~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-------SKRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-------cCCCCCceEeeCC
Confidence 7999999999999998765 2223445565543
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.72 E-value=93 Score=23.53 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCceeEEEE
Q 005812 440 EEVKQRFSAFGEVVSFVP 457 (676)
Q Consensus 440 edl~~~F~~~G~v~~v~i 457 (676)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999987654
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.31 E-value=1.3e+02 Score=24.45 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=40.0
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CCc-eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 005812 219 LIIRNIPFKAKVNEIKDMFSP-VGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (676)
Q Consensus 219 v~V~nLp~~~~e~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (676)
-|+--++..++..+|+..++. ||. |.+|.....+. ...=|||.+.....|.....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 445556788999999999887 664 66776655431 223399999999888887654
No 235
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.87 E-value=49 Score=32.85 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=36.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHH
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 269 (676)
..-|+++|||.++.-.||+..+.+.|.+- ..|.. .| ..|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw---kg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW---KG-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEee---ec-CCcceeEecCCcc
Confidence 36799999999999999999998877543 22222 22 4567999998753
No 236
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=26.04 E-value=2.8e+02 Score=22.51 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=42.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-CC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 005812 428 IFICNLPFDLDNEEVKQRFSA-FG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487 (676)
Q Consensus 428 l~V~nLp~~~teedl~~~F~~-~G-~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l 487 (676)
-|.--.+..++..+|++.++. || .|.+|..+..+ ....-|||++.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 344446788999999999997 66 57777666553 23456999999999998876654
No 237
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=25.90 E-value=1e+02 Score=32.02 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=23.3
Q ss_pred EEEEecCHHHHHHHHHHhCCceecCeEEEEeec
Q 005812 14 GYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46 (676)
Q Consensus 14 afV~F~~~edA~~Al~~~~g~~i~gr~i~v~~a 46 (676)
|||+|.+..+|..|++.+.. .+++.+++..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~--~~~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS--KRPNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc--CCCCCceEeeC
Confidence 79999999999999997552 23455566555
No 238
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=24.40 E-value=13 Score=40.38 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=54.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 286 (676)
..+++|++|++++++-++|..+++.+-.+..+-+...........+++|+|+---.-..|+.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 358899999999999999999999987777665544332333556788999977777777777787766443
No 239
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.32 E-value=96 Score=32.49 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=47.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEcccCCC--CCceeEEEEEecCHHHHHHHHHHhCCcee
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 283 (676)
....|.|.+||+..++++|.+...++-. +....+.....+ ..-.+.|||.|...++.......++|..|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467899999999999999988887543 222333221111 12356799999999998877777777654
No 240
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=22.16 E-value=1.5e+02 Score=22.41 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=16.6
Q ss_pred HHHHHhhccCCceEEEEEcc
Q 005812 231 NEIKDMFSPVGLVWNVYIPH 250 (676)
Q Consensus 231 ~~l~~~F~~~G~i~~v~i~~ 250 (676)
.+||++|+..|.|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999998766643
No 241
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.34 E-value=1.5e+02 Score=31.17 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=45.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (676)
.+.|-|.++|.....+||...|..|+. --+|.++-+ ..||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 578999999999999999999999975 345666654 3599999999999999984
Done!