Query 005812
Match_columns 676
No_of_seqs 345 out of 3955
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 08:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 5.7E-42 2E-46 351.8 32.3 249 118-514 19-268 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 7.6E-42 2.6E-46 352.4 27.7 253 116-510 36-291 (292)
3 3smz_A Protein raver-1, ribonu 100.0 6.1E-40 2.1E-44 336.7 28.9 243 215-675 21-264 (284)
4 2ghp_A U4/U6 snRNA-associated 100.0 1.9E-39 6.5E-44 334.4 24.3 252 212-675 37-291 (292)
5 4f02_A Polyadenylate-binding p 100.0 1.3E-31 4.3E-36 262.2 20.8 173 213-513 12-184 (213)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-30 3.6E-35 245.7 21.2 165 215-507 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 2E-30 6.8E-35 243.5 22.0 165 215-507 1-167 (167)
8 1l3k_A Heterogeneous nuclear r 100.0 2E-30 6.9E-35 250.4 22.2 180 211-514 8-187 (196)
9 3md3_A Nuclear and cytoplasmic 100.0 2.7E-30 9.4E-35 242.3 22.0 165 217-508 1-165 (166)
10 3md3_A Nuclear and cytoplasmic 100.0 1.2E-29 3.9E-34 238.0 21.9 164 122-295 1-166 (166)
11 1b7f_A Protein (SXL-lethal pro 100.0 1.3E-29 4.5E-34 238.3 21.3 164 121-293 3-168 (168)
12 2cjk_A Nuclear polyadenylated 100.0 1.1E-30 3.9E-35 245.3 13.7 165 215-510 2-166 (167)
13 4f02_A Polyadenylate-binding p 100.0 8.1E-30 2.8E-34 249.4 19.3 167 120-297 14-182 (213)
14 1fxl_A Paraneoplastic encephal 100.0 2.2E-29 7.5E-34 236.4 21.0 164 121-293 2-167 (167)
15 2qfj_A FBP-interacting repress 100.0 4.8E-30 1.7E-34 251.8 16.9 180 215-511 27-206 (216)
16 2cjk_A Nuclear polyadenylated 100.0 6.9E-30 2.4E-34 240.0 13.9 165 120-296 2-166 (167)
17 3nmr_A Cugbp ELAV-like family 100.0 5.5E-29 1.9E-33 235.6 20.1 165 215-507 2-174 (175)
18 2qfj_A FBP-interacting repress 100.0 8.2E-29 2.8E-33 243.0 20.9 171 119-298 26-207 (216)
19 1l3k_A Heterogeneous nuclear r 100.0 1E-28 3.4E-33 238.5 20.9 170 119-299 11-186 (196)
20 2g4b_A Splicing factor U2AF 65 100.0 2.3E-28 7.7E-33 230.8 19.1 158 215-507 3-171 (172)
21 2g4b_A Splicing factor U2AF 65 100.0 3.5E-28 1.2E-32 229.4 20.2 159 119-293 2-171 (172)
22 2yh0_A Splicing factor U2AF 65 100.0 7.9E-28 2.7E-32 232.6 21.5 182 215-511 3-195 (198)
23 3tyt_A Heterogeneous nuclear r 100.0 9.4E-28 3.2E-32 232.2 20.5 195 215-507 3-204 (205)
24 1fje_B Nucleolin RBD12, protei 100.0 1.1E-28 3.7E-33 233.7 13.3 166 212-510 9-174 (175)
25 3nmr_A Cugbp ELAV-like family 100.0 1.1E-27 3.8E-32 226.6 19.2 167 425-672 3-174 (175)
26 3pgw_A U1-A; protein-RNA compl 100.0 2.2E-26 7.5E-31 235.4 26.9 254 212-508 5-281 (282)
27 2yh0_A Splicing factor U2AF 65 99.9 4.7E-27 1.6E-31 227.1 19.8 163 119-297 2-195 (198)
28 2adc_A Polypyrimidine tract-bi 99.9 6.3E-27 2.1E-31 231.5 20.9 196 212-510 30-228 (229)
29 1qm9_A Polypyrimidine tract-bi 99.9 5.3E-27 1.8E-31 226.9 18.6 193 215-510 2-197 (198)
30 1fje_B Nucleolin RBD12, protei 99.9 2.1E-27 7.2E-32 224.8 14.5 162 119-296 11-174 (175)
31 3sde_A Paraspeckle component 1 99.9 1.7E-26 5.9E-31 233.1 20.3 160 212-511 18-180 (261)
32 3tyt_A Heterogeneous nuclear r 99.9 2.2E-26 7.6E-31 222.5 19.2 158 120-293 3-204 (205)
33 2adc_A Polypyrimidine tract-bi 99.9 1.2E-25 4E-30 222.4 20.2 159 119-296 32-228 (229)
34 3pgw_A U1-A; protein-RNA compl 99.9 1.6E-25 5.4E-30 229.1 21.4 159 119-294 7-281 (282)
35 1qm9_A Polypyrimidine tract-bi 99.9 8.5E-26 2.9E-30 218.3 16.4 157 121-296 3-197 (198)
36 3sde_A Paraspeckle component 1 99.9 2.4E-25 8.1E-30 224.7 19.5 157 119-297 20-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.8 5.8E-20 2E-24 170.4 16.0 82 425-511 70-151 (158)
38 2kn4_A Immunoglobulin G-bindin 99.8 4.2E-20 1.5E-24 171.3 15.0 128 170-297 11-151 (158)
39 4f25_A Polyadenylate-binding p 99.8 7.7E-20 2.6E-24 159.5 10.6 80 425-511 5-84 (115)
40 4f25_A Polyadenylate-binding p 99.8 1.9E-19 6.5E-24 157.0 11.0 81 215-297 4-84 (115)
41 2i2y_A Fusion protein consists 99.8 2.6E-19 8.8E-24 164.4 10.2 77 424-510 72-148 (150)
42 2i2y_A Fusion protein consists 99.8 4.4E-19 1.5E-23 162.8 11.4 123 169-297 10-149 (150)
43 4fxv_A ELAV-like protein 1; RN 99.8 7.6E-19 2.6E-23 148.5 11.6 81 424-509 18-98 (99)
44 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-18 5.2E-23 146.6 11.5 83 213-295 16-98 (99)
45 3s8s_A Histone-lysine N-methyl 99.7 1.2E-17 4.1E-22 143.9 12.5 86 424-514 5-90 (110)
46 2lxi_A RNA-binding protein 10; 99.7 1.8E-18 6.1E-23 143.9 7.1 82 426-511 2-84 (91)
47 2lkz_A RNA-binding protein 5; 99.7 7.7E-18 2.6E-22 140.6 7.6 79 426-509 10-94 (95)
48 2lxi_A RNA-binding protein 10; 99.7 6.4E-18 2.2E-22 140.5 6.8 82 216-297 1-84 (91)
49 3s8s_A Histone-lysine N-methyl 99.7 5E-17 1.7E-21 140.0 12.5 83 214-296 4-86 (110)
50 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.8E-17 1.3E-21 134.8 11.0 82 424-510 5-86 (87)
51 2lkz_A RNA-binding protein 5; 99.7 2.3E-17 7.9E-22 137.6 9.0 84 212-295 5-94 (95)
52 2lea_A Serine/arginine-rich sp 99.7 9.3E-18 3.2E-22 150.5 6.9 123 174-297 6-128 (135)
53 3md1_A Nuclear and cytoplasmic 99.7 6.5E-17 2.2E-21 132.1 11.2 81 426-511 2-82 (83)
54 3bs9_A Nucleolysin TIA-1 isofo 99.7 9.7E-17 3.3E-21 132.4 11.3 83 214-296 4-86 (87)
55 3md1_A Nuclear and cytoplasmic 99.7 1.3E-16 4.5E-21 130.2 12.0 81 217-297 2-82 (83)
56 2cqc_A Arginine/serine-rich sp 99.7 1.6E-16 5.6E-21 133.4 12.7 84 421-509 11-94 (95)
57 1whw_A Hypothetical protein ri 99.7 1.9E-16 6.5E-21 134.1 13.2 87 212-298 4-90 (99)
58 2x1f_A MRNA 3'-END-processing 99.7 1.3E-16 4.5E-21 134.2 11.8 85 425-514 2-86 (96)
59 2do4_A Squamous cell carcinoma 99.7 1.9E-16 6.5E-21 134.4 12.7 85 421-511 13-97 (100)
60 2cpz_A CUG triplet repeat RNA- 99.7 1.7E-16 5.7E-21 138.4 12.7 86 421-511 21-106 (115)
61 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1E-16 3.5E-21 131.6 10.3 81 423-508 5-85 (85)
62 1whw_A Hypothetical protein ri 99.7 1.4E-16 4.8E-21 134.9 11.3 84 423-511 6-89 (99)
63 3ns6_A Eukaryotic translation 99.7 2E-17 6.9E-22 140.2 6.0 84 424-512 5-95 (100)
64 2cq0_A Eukaryotic translation 99.7 3.2E-16 1.1E-20 133.7 13.1 87 212-298 11-97 (103)
65 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.8E-16 6.2E-21 130.1 10.6 82 213-294 4-85 (85)
66 2dgo_A Cytotoxic granule-assoc 99.7 3.5E-16 1.2E-20 136.4 13.0 86 421-511 11-96 (115)
67 2cq0_A Eukaryotic translation 99.7 2.3E-16 7.7E-21 134.7 11.5 86 421-511 11-96 (103)
68 1x5u_A Splicing factor 3B subu 99.7 1.8E-16 6.1E-21 135.8 10.9 86 421-511 11-96 (105)
69 2jrs_A RNA-binding protein 39; 99.7 1.9E-16 6.3E-21 136.2 10.9 86 421-511 22-107 (108)
70 2x1f_A MRNA 3'-END-processing 99.7 2.6E-16 8.8E-21 132.4 11.6 83 216-298 2-84 (96)
71 2lea_A Serine/arginine-rich sp 99.7 2.1E-17 7.1E-22 148.2 5.1 83 424-511 46-128 (135)
72 2dnz_A Probable RNA-binding pr 99.7 1.8E-16 6.1E-21 133.1 10.5 83 424-511 4-86 (95)
73 2e5h_A Zinc finger CCHC-type a 99.7 3E-16 1E-20 131.5 11.7 82 422-508 13-94 (94)
74 1p27_B RNA-binding protein 8A; 99.7 1.7E-16 5.7E-21 136.3 10.4 85 422-511 20-104 (106)
75 2dgs_A DAZ-associated protein 99.7 5.2E-16 1.8E-20 131.3 13.3 86 212-298 6-91 (99)
76 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.2E-16 7.5E-21 147.1 11.6 122 177-298 11-154 (165)
77 2dnz_A Probable RNA-binding pr 99.7 3.6E-16 1.2E-20 131.2 11.7 85 214-298 3-87 (95)
78 3p5t_L Cleavage and polyadenyl 99.7 4.9E-17 1.7E-21 135.0 6.2 81 426-511 2-84 (90)
79 2do4_A Squamous cell carcinoma 99.7 4.8E-16 1.6E-20 131.9 12.4 85 212-297 13-97 (100)
80 2dgo_A Cytotoxic granule-assoc 99.7 9.3E-16 3.2E-20 133.7 14.4 88 211-298 10-97 (115)
81 2dgs_A DAZ-associated protein 99.7 2.4E-16 8.2E-21 133.5 10.3 84 422-511 7-90 (99)
82 2la6_A RNA-binding protein FUS 99.7 3.4E-16 1.2E-20 132.5 11.2 83 421-508 9-99 (99)
83 2cqc_A Arginine/serine-rich sp 99.7 4.1E-16 1.4E-20 130.9 11.7 84 212-295 11-94 (95)
84 1x5t_A Splicing factor 3B subu 99.7 1.7E-16 5.9E-21 133.5 9.3 83 424-511 4-87 (96)
85 1s79_A Lupus LA protein; RRM, 99.7 9.2E-17 3.1E-21 136.5 7.6 82 422-510 8-89 (103)
86 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.8E-16 6.2E-21 135.0 9.5 84 423-511 10-93 (102)
87 2jrs_A RNA-binding protein 39; 99.7 3.8E-16 1.3E-20 134.3 11.4 86 212-297 22-107 (108)
88 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.6E-16 1.2E-20 133.1 11.2 87 212-298 8-94 (102)
89 2e5h_A Zinc finger CCHC-type a 99.7 3.8E-16 1.3E-20 130.8 11.2 83 212-294 12-94 (94)
90 1oo0_B CG8781-PA, drosophila Y 99.7 2.6E-16 9E-21 136.0 10.3 86 421-511 22-107 (110)
91 3r27_A HnRNP L, heterogeneous 99.7 2.8E-16 9.7E-21 130.9 9.9 80 421-511 17-98 (100)
92 1x5u_A Splicing factor 3B subu 99.7 4.2E-16 1.4E-20 133.5 11.3 88 211-298 10-97 (105)
93 3p5t_L Cleavage and polyadenyl 99.7 7.5E-17 2.6E-21 133.9 6.3 81 217-297 2-84 (90)
94 2la6_A RNA-binding protein FUS 99.7 5.8E-16 2E-20 131.0 11.9 84 211-294 8-99 (99)
95 2dnh_A Bruno-like 5, RNA bindi 99.7 5.5E-16 1.9E-20 132.8 11.9 84 422-511 12-98 (105)
96 1sjq_A Polypyrimidine tract-bi 99.7 1.6E-16 5.4E-21 133.9 8.3 81 422-511 13-93 (105)
97 1x5t_A Splicing factor 3B subu 99.7 3.2E-16 1.1E-20 131.8 10.2 85 214-298 3-88 (96)
98 2dnm_A SRP46 splicing factor; 99.7 2E-16 6.9E-21 135.0 9.1 86 421-511 9-94 (103)
99 1p27_B RNA-binding protein 8A; 99.7 4.1E-16 1.4E-20 133.8 10.9 86 212-297 19-104 (106)
100 1x5s_A Cold-inducible RNA-bind 99.7 2.1E-16 7E-21 134.7 8.9 84 423-511 10-93 (102)
101 3ns6_A Eukaryotic translation 99.7 9.7E-17 3.3E-21 136.0 6.8 83 215-297 5-94 (100)
102 2cpz_A CUG triplet repeat RNA- 99.7 5.5E-16 1.9E-20 135.1 11.7 87 212-298 21-107 (115)
103 2cph_A RNA binding motif prote 99.7 4.1E-16 1.4E-20 134.0 10.8 86 421-511 11-98 (107)
104 2dnm_A SRP46 splicing factor; 99.7 4.1E-16 1.4E-20 133.1 10.7 87 211-297 8-94 (103)
105 2cpf_A RNA binding motif prote 99.7 3.3E-16 1.1E-20 132.3 10.0 83 424-511 4-89 (98)
106 3s7r_A Heterogeneous nuclear r 99.7 8.2E-16 2.8E-20 126.7 12.1 80 422-507 8-87 (87)
107 1u6f_A Tcubp1, RNA-binding pro 99.7 9.2E-16 3.2E-20 138.6 13.6 87 420-511 37-123 (139)
108 1x5s_A Cold-inducible RNA-bind 99.7 4.7E-16 1.6E-20 132.4 10.8 88 211-298 7-94 (102)
109 2ywk_A Putative RNA-binding pr 99.6 5.2E-16 1.8E-20 130.3 10.7 82 422-509 13-94 (95)
110 1x4h_A RNA-binding protein 28; 99.6 9.9E-16 3.4E-20 132.6 12.8 87 212-298 11-103 (111)
111 2wbr_A GW182, gawky, LD47780P; 99.6 4.9E-16 1.7E-20 124.4 9.8 72 425-507 7-78 (89)
112 3ucg_A Polyadenylate-binding p 99.6 6.4E-16 2.2E-20 128.0 10.9 80 425-510 6-85 (89)
113 3n9u_C Cleavage and polyadenyl 99.6 6E-16 2E-20 142.0 11.7 84 424-512 54-139 (156)
114 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.7E-16 1.6E-20 144.8 11.2 85 423-512 70-154 (165)
115 2dng_A Eukaryotic translation 99.6 9E-16 3.1E-20 130.9 11.9 83 422-511 12-94 (103)
116 1p1t_A Cleavage stimulation fa 99.6 2.6E-16 9E-21 134.5 8.6 86 424-514 7-92 (104)
117 2cph_A RNA binding motif prote 99.6 9.6E-16 3.3E-20 131.8 12.1 87 212-298 11-99 (107)
118 2cq4_A RNA binding motif prote 99.6 3.3E-16 1.1E-20 136.3 9.3 83 423-511 23-105 (114)
119 2khc_A Testis-specific RNP-typ 99.6 6.4E-16 2.2E-20 135.4 11.1 83 421-508 36-118 (118)
120 1oo0_B CG8781-PA, drosophila Y 99.6 6.4E-16 2.2E-20 133.5 10.9 86 212-297 22-107 (110)
121 2div_A TRNA selenocysteine ass 99.6 7E-16 2.4E-20 130.6 10.9 86 212-297 5-95 (99)
122 2dnh_A Bruno-like 5, RNA bindi 99.6 1.5E-15 5.2E-20 130.0 13.0 86 212-298 11-99 (105)
123 2div_A TRNA selenocysteine ass 99.6 6E-16 2.1E-20 131.0 10.3 83 423-510 7-94 (99)
124 2d9p_A Polyadenylate-binding p 99.6 1.4E-15 4.8E-20 129.7 12.5 85 212-298 11-95 (103)
125 2kxn_B Transformer-2 protein h 99.6 3E-16 1E-20 139.3 8.7 86 421-511 42-127 (129)
126 2d9p_A Polyadenylate-binding p 99.6 6.9E-16 2.4E-20 131.6 10.6 83 422-511 12-94 (103)
127 3ulh_A THO complex subunit 4; 99.6 1E-15 3.5E-20 131.6 11.6 81 422-508 26-106 (107)
128 2dng_A Eukaryotic translation 99.6 1.9E-15 6.4E-20 128.9 13.2 85 212-298 11-95 (103)
129 1wi8_A EIF-4B, eukaryotic tran 99.6 6.2E-16 2.1E-20 132.2 10.1 82 423-511 13-95 (104)
130 2cpf_A RNA binding motif prote 99.6 8.5E-16 2.9E-20 129.8 10.7 84 214-297 3-89 (98)
131 4a8x_A RNA-binding protein wit 99.6 8.3E-16 2.8E-20 127.0 10.4 83 215-297 3-86 (88)
132 4a8x_A RNA-binding protein wit 99.6 5.7E-16 1.9E-20 128.0 9.3 81 425-510 4-85 (88)
133 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.3E-15 7.7E-20 128.4 13.2 83 422-511 12-94 (103)
134 2fy1_A RNA-binding motif prote 99.6 7.2E-16 2.5E-20 134.3 10.3 83 423-511 5-87 (116)
135 2dh8_A DAZ-associated protein 99.6 7.7E-16 2.6E-20 131.9 10.2 85 421-511 12-96 (105)
136 3lqv_A PRE-mRNA branch site pr 99.6 2.5E-16 8.5E-21 137.4 7.3 81 213-296 5-85 (115)
137 2cq3_A RNA-binding protein 9; 99.6 1.9E-15 6.5E-20 128.9 12.7 84 421-511 11-94 (103)
138 3r27_A HnRNP L, heterogeneous 99.6 7.9E-16 2.7E-20 128.2 9.9 80 212-297 17-98 (100)
139 2wbr_A GW182, gawky, LD47780P; 99.6 6.3E-16 2.2E-20 123.8 8.9 75 214-294 5-79 (89)
140 2dgp_A Bruno-like 4, RNA bindi 99.6 5.6E-16 1.9E-20 133.0 9.2 85 422-511 10-97 (106)
141 3s7r_A Heterogeneous nuclear r 99.6 1.5E-15 5.3E-20 125.1 11.6 81 212-293 7-87 (87)
142 2dgw_A Probable RNA-binding pr 99.6 1.6E-15 5.3E-20 126.2 11.6 81 423-511 8-88 (91)
143 2cqp_A RNA-binding protein 12; 99.6 6.4E-16 2.2E-20 130.5 9.4 82 424-510 14-95 (98)
144 2cpe_A RNA-binding protein EWS 99.6 7.1E-16 2.4E-20 134.0 9.8 85 422-511 12-104 (113)
145 2dhg_A TRNA selenocysteine ass 99.6 5.6E-16 1.9E-20 132.5 8.9 84 422-511 6-91 (104)
146 3ucg_A Polyadenylate-binding p 99.6 9.6E-16 3.3E-20 126.9 10.1 80 216-296 6-85 (89)
147 2cqd_A RNA-binding region cont 99.6 1.6E-15 5.6E-20 132.3 12.1 84 421-510 13-96 (116)
148 2cqg_A TDP-43, TAR DNA-binding 99.6 2.5E-15 8.5E-20 128.1 12.9 84 421-511 11-94 (103)
149 2dgx_A KIAA0430 protein; RRM d 99.6 1.2E-15 4E-20 128.3 10.6 79 424-510 8-90 (96)
150 2dgp_A Bruno-like 4, RNA bindi 99.6 1E-15 3.5E-20 131.3 10.4 87 211-297 8-97 (106)
151 1wi8_A EIF-4B, eukaryotic tran 99.6 1.5E-15 5.1E-20 129.8 11.4 85 212-298 11-96 (104)
152 2kxn_B Transformer-2 protein h 99.6 7.3E-16 2.5E-20 136.8 9.7 87 211-297 41-127 (129)
153 2rs2_A Musashi-1, RNA-binding 99.6 7.5E-16 2.5E-20 132.7 9.4 85 421-511 21-105 (109)
154 3ulh_A THO complex subunit 4; 99.6 2.1E-15 7.1E-20 129.6 12.2 83 211-294 24-106 (107)
155 2cpe_A RNA-binding protein EWS 99.6 1.7E-15 5.9E-20 131.5 11.8 87 212-298 11-105 (113)
156 2ywk_A Putative RNA-binding pr 99.6 1.2E-15 4.2E-20 128.0 10.5 83 212-295 12-94 (95)
157 2fy1_A RNA-binding motif prote 99.6 2E-15 7E-20 131.5 12.0 85 213-298 4-88 (116)
158 1s79_A Lupus LA protein; RRM, 99.6 6.6E-16 2.3E-20 131.1 8.7 81 213-295 8-88 (103)
159 2ek1_A RNA-binding protein 12; 99.6 4.5E-16 1.5E-20 130.6 7.5 80 425-509 15-94 (95)
160 3lqv_A PRE-mRNA branch site pr 99.6 6.4E-16 2.2E-20 134.7 8.8 81 422-510 5-85 (115)
161 2khc_A Testis-specific RNP-typ 99.6 1.2E-15 4.2E-20 133.6 10.5 83 212-294 36-118 (118)
162 2dgx_A KIAA0430 protein; RRM d 99.6 1.9E-15 6.4E-20 127.0 11.2 83 212-297 5-91 (96)
163 2cq3_A RNA-binding protein 9; 99.6 4.6E-15 1.6E-19 126.5 13.7 86 211-298 10-95 (103)
164 2dgv_A HnRNP M, heterogeneous 99.6 1.3E-15 4.6E-20 126.9 10.1 82 423-511 6-87 (92)
165 2cqp_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 129.1 9.7 85 212-296 11-95 (98)
166 2dgv_A HnRNP M, heterogeneous 99.6 1.8E-15 6.3E-20 126.1 10.8 84 212-297 4-87 (92)
167 1x4b_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 133.4 9.8 83 423-511 25-107 (116)
168 1x4h_A RNA-binding protein 28; 99.6 2.3E-15 8E-20 130.2 11.8 91 421-511 11-102 (111)
169 2cq1_A PTB-like protein L; RRM 99.6 2.1E-15 7.1E-20 127.2 11.1 81 422-511 12-92 (101)
170 2dhg_A TRNA selenocysteine ass 99.6 1.7E-15 5.8E-20 129.4 10.8 86 212-298 5-92 (104)
171 1wel_A RNA-binding protein 12; 99.6 6.4E-16 2.2E-20 136.6 8.3 87 422-514 22-108 (124)
172 1sjq_A Polypyrimidine tract-bi 99.6 9E-16 3.1E-20 129.2 8.8 82 211-298 11-94 (105)
173 2m2b_A RNA-binding protein 10; 99.6 3.2E-16 1.1E-20 140.0 6.4 83 422-510 20-108 (131)
174 1x4a_A Splicing factor, argini 99.6 2.9E-15 1E-19 129.1 12.1 83 421-511 18-100 (109)
175 3ex7_B RNA-binding protein 8A; 99.6 8.7E-16 3E-20 136.2 9.0 86 421-511 18-103 (126)
176 2mss_A Protein (musashi1); RNA 99.6 4.4E-16 1.5E-20 124.4 6.3 75 427-507 1-75 (75)
177 1p1t_A Cleavage stimulation fa 99.6 9.8E-16 3.3E-20 131.0 8.9 83 215-297 7-89 (104)
178 2mss_A Protein (musashi1); RNA 99.6 5.6E-16 1.9E-20 123.8 6.9 75 218-293 1-75 (75)
179 2cqd_A RNA-binding region cont 99.6 3E-15 1E-19 130.7 12.0 85 212-297 13-97 (116)
180 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.6E-16 9E-21 133.4 5.1 84 421-511 15-99 (100)
181 2cpy_A RNA-binding protein 12; 99.6 1.4E-15 4.9E-20 132.1 9.8 84 423-513 13-97 (114)
182 2a3j_A U1 small nuclear ribonu 99.6 1.4E-15 4.7E-20 134.0 9.8 85 421-513 25-113 (127)
183 2dgw_A Probable RNA-binding pr 99.6 4E-15 1.4E-19 123.7 12.0 83 212-297 6-88 (91)
184 2ek1_A RNA-binding protein 12; 99.6 8.5E-16 2.9E-20 129.0 8.0 83 213-295 12-94 (95)
185 3n9u_C Cleavage and polyadenyl 99.6 1.5E-15 5.2E-20 139.3 10.4 83 215-297 54-138 (156)
186 2hvz_A Splicing factor, argini 99.6 6.5E-16 2.2E-20 131.3 7.2 76 426-511 1-76 (101)
187 2err_A Ataxin-2-binding protei 99.6 1.6E-15 5.4E-20 130.7 9.7 83 421-510 25-107 (109)
188 2db1_A Heterogeneous nuclear r 99.6 2.2E-15 7.7E-20 131.6 10.8 82 423-511 15-99 (118)
189 1x4e_A RNA binding motif, sing 99.6 2.4E-16 8.2E-21 129.4 4.2 80 424-508 4-83 (85)
190 2hgl_A HNRPF protein, heteroge 99.6 1.2E-15 4.1E-20 136.0 9.0 82 423-511 42-126 (136)
191 2kt5_A RNA and export factor-b 99.6 5.1E-15 1.7E-19 130.8 13.0 84 421-510 31-114 (124)
192 3ex7_B RNA-binding protein 8A; 99.6 1.9E-15 6.5E-20 134.1 10.3 87 212-298 18-104 (126)
193 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.4E-15 1.8E-19 126.0 12.7 84 212-297 11-94 (103)
194 1x4e_A RNA binding motif, sing 99.6 5.8E-16 2E-20 127.0 6.3 81 214-294 3-83 (85)
195 2dh8_A DAZ-associated protein 99.6 1.7E-15 5.9E-20 129.6 9.5 86 212-298 12-97 (105)
196 2hvz_A Splicing factor, argini 99.6 9.9E-16 3.4E-20 130.1 7.9 76 217-297 1-76 (101)
197 2j76_E EIF-4B, EIF4B, eukaryot 99.6 8.6E-16 3E-20 130.2 7.5 84 212-297 15-99 (100)
198 2do0_A HnRNP M, heterogeneous 99.6 9.6E-15 3.3E-19 127.0 14.3 85 212-297 11-95 (114)
199 2do0_A HnRNP M, heterogeneous 99.6 3.6E-15 1.2E-19 129.7 11.6 82 423-510 13-94 (114)
200 1x4d_A Matrin 3; structural ge 99.6 7.1E-16 2.4E-20 129.9 6.7 80 423-511 13-93 (102)
201 1u6f_A Tcubp1, RNA-binding pro 99.6 4.8E-15 1.7E-19 133.9 12.7 86 213-298 39-124 (139)
202 1x5o_A RNA binding motif, sing 99.6 4.7E-15 1.6E-19 129.0 12.1 84 421-510 21-112 (114)
203 2ad9_A Polypyrimidine tract-bi 99.6 1.3E-15 4.5E-20 131.6 8.4 81 422-511 28-108 (119)
204 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.9E-15 1.3E-19 137.3 12.2 85 422-511 36-120 (156)
205 2cpi_A CCR4-NOT transcription 99.6 2.7E-15 9.2E-20 129.7 10.4 86 212-297 11-102 (111)
206 2cpi_A CCR4-NOT transcription 99.6 2.5E-15 8.5E-20 129.9 9.9 83 424-511 14-102 (111)
207 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.3E-15 1.8E-19 133.8 12.6 82 421-507 59-140 (140)
208 2dnn_A RNA-binding protein 12; 99.6 2E-15 6.8E-20 129.3 9.2 78 425-510 16-93 (109)
209 2rs2_A Musashi-1, RNA-binding 99.6 3.3E-15 1.1E-19 128.6 10.5 85 212-297 21-105 (109)
210 3pgw_S U1-70K; protein-RNA com 99.6 6.5E-16 2.2E-20 165.8 7.3 85 214-298 100-184 (437)
211 1wez_A HnRNP H', FTP-3, hetero 99.6 1.4E-15 5E-20 129.0 8.0 80 423-510 13-92 (102)
212 2dis_A Unnamed protein product 99.6 1.3E-15 4.5E-20 131.3 7.9 84 424-512 7-94 (109)
213 2kt5_A RNA and export factor-b 99.6 6.3E-15 2.2E-19 130.2 12.5 86 212-298 31-116 (124)
214 2dis_A Unnamed protein product 99.6 4.2E-15 1.4E-19 128.2 11.0 86 213-298 5-94 (109)
215 2cpx_A Hypothetical protein FL 99.6 1.2E-15 3.9E-20 133.1 7.4 86 421-511 21-106 (115)
216 2cqg_A TDP-43, TAR DNA-binding 99.6 9.8E-15 3.3E-19 124.4 13.0 85 212-298 11-95 (103)
217 1x4d_A Matrin 3; structural ge 99.6 3.3E-15 1.1E-19 125.9 9.7 79 213-297 12-93 (102)
218 2err_A Ataxin-2-binding protei 99.6 3.7E-15 1.3E-19 128.4 10.3 84 211-296 24-107 (109)
219 2nlw_A Eukaryotic translation 99.6 3E-15 1E-19 128.0 9.7 84 213-298 12-102 (105)
220 1uaw_A Mouse-musashi-1; RNP-ty 99.6 9.3E-16 3.2E-20 123.2 6.0 76 217-293 1-76 (77)
221 2nlw_A Eukaryotic translation 99.6 3.1E-15 1.1E-19 127.9 9.6 81 423-510 13-100 (105)
222 1wg5_A Heterogeneous nuclear r 99.6 3.2E-15 1.1E-19 127.6 9.6 81 423-510 13-94 (104)
223 1x4f_A Matrin 3; structural ge 99.6 1.5E-15 5.1E-20 129.8 7.4 81 422-511 22-103 (112)
224 1wg5_A Heterogeneous nuclear r 99.6 7.3E-15 2.5E-19 125.3 11.6 84 212-297 11-95 (104)
225 1h2v_Z 20 kDa nuclear CAP bind 99.6 7.7E-15 2.6E-19 135.3 12.6 86 212-297 35-120 (156)
226 2cq1_A PTB-like protein L; RRM 99.6 1.3E-14 4.4E-19 122.4 12.8 80 213-298 12-93 (101)
227 2ki2_A SS-DNA binding protein 99.6 6.5E-16 2.2E-20 128.2 4.8 81 217-298 2-82 (90)
228 1wez_A HnRNP H', FTP-3, hetero 99.6 4.7E-15 1.6E-19 125.8 10.2 83 212-297 11-93 (102)
229 1wex_A Hypothetical protein (r 99.6 2.7E-15 9.1E-20 127.4 8.6 81 422-511 12-92 (104)
230 1x5o_A RNA binding motif, sing 99.6 8.4E-15 2.9E-19 127.3 12.0 84 212-296 21-112 (114)
231 2ki2_A SS-DNA binding protein 99.6 5.7E-16 2E-20 128.6 4.4 80 426-511 2-81 (90)
232 2jwn_A Embryonic polyadenylate 99.6 4.5E-15 1.5E-19 131.2 10.4 80 425-510 36-115 (124)
233 3pgw_S U1-70K; protein-RNA com 99.6 8.8E-16 3E-20 164.8 6.8 83 424-511 101-183 (437)
234 2cq4_A RNA binding motif prote 99.6 2.6E-15 8.7E-20 130.6 8.5 81 216-297 25-105 (114)
235 2m2b_A RNA-binding protein 10; 99.6 1.2E-15 4.2E-20 136.2 6.4 84 213-297 20-109 (131)
236 1x4a_A Splicing factor, argini 99.6 1E-14 3.5E-19 125.7 12.0 83 212-297 18-100 (109)
237 1x4b_A Heterogeneous nuclear r 99.6 5.5E-15 1.9E-19 129.0 10.2 82 216-298 27-108 (116)
238 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.5E-15 5.1E-20 122.0 6.0 77 426-508 1-77 (77)
239 1wex_A Hypothetical protein (r 99.6 9E-15 3.1E-19 124.1 11.0 81 212-298 11-93 (104)
240 2ad9_A Polypyrimidine tract-bi 99.6 7.7E-15 2.7E-19 126.8 10.6 81 212-298 27-109 (119)
241 2fc9_A NCL protein; structure 99.6 9E-15 3.1E-19 124.2 10.9 81 422-511 12-92 (101)
242 2jwn_A Embryonic polyadenylate 99.6 6.2E-15 2.1E-19 130.3 10.1 81 216-297 36-116 (124)
243 1x4c_A Splicing factor, argini 99.6 1.2E-14 4E-19 125.1 11.5 76 424-511 14-94 (108)
244 2xnq_A Nuclear polyadenylated 99.6 9.9E-15 3.4E-19 122.7 10.8 77 421-510 18-95 (97)
245 2cpy_A RNA-binding protein 12; 99.6 4E-15 1.4E-19 129.3 8.5 84 212-297 11-95 (114)
246 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.9E-15 2.7E-19 132.6 10.8 82 212-293 59-140 (140)
247 2jvr_A Nucleolar protein 3; RN 99.6 5.4E-15 1.8E-19 126.8 9.1 78 424-510 27-105 (111)
248 2a3j_A U1 small nuclear ribonu 99.6 6.9E-15 2.3E-19 129.6 9.9 84 212-298 25-112 (127)
249 2ytc_A PRE-mRNA-splicing facto 99.6 9.8E-15 3.4E-19 119.6 10.3 76 422-508 9-85 (85)
250 1fj7_A Nucleolin RBD1, protein 99.6 9E-16 3.1E-20 130.4 4.1 82 423-511 15-96 (101)
251 1why_A Hypothetical protein ri 99.6 8.3E-15 2.9E-19 123.3 10.0 80 421-511 13-94 (97)
252 2fc9_A NCL protein; structure 99.6 2E-14 6.7E-19 122.0 12.4 83 212-298 11-93 (101)
253 2lmi_A GRSF-1, G-rich sequence 99.6 1.6E-15 5.5E-20 130.2 5.4 84 422-512 8-94 (107)
254 2fc8_A NCL protein; structure 99.6 1.2E-14 4.2E-19 123.5 10.9 82 422-511 12-93 (102)
255 2dnq_A RNA-binding protein 4B; 99.6 8.6E-15 2.9E-19 121.4 9.5 76 423-511 6-81 (90)
256 1iqt_A AUF1, heterogeneous nuc 99.6 1.8E-15 6.3E-20 120.8 5.1 75 427-507 1-75 (75)
257 2dnq_A RNA-binding protein 4B; 99.6 1.8E-14 6E-19 119.5 11.2 79 212-298 4-82 (90)
258 2db1_A Heterogeneous nuclear r 99.6 8E-15 2.8E-19 128.1 9.6 82 213-296 14-98 (118)
259 2hgl_A HNRPF protein, heteroge 99.6 5E-15 1.7E-19 132.0 8.4 83 212-296 40-125 (136)
260 2e5j_A Methenyltetrahydrofolat 99.6 1.2E-14 4E-19 122.4 10.2 80 422-511 16-95 (97)
261 2cpj_A Non-POU domain-containi 99.6 8.7E-15 3E-19 123.7 9.4 79 422-511 12-90 (99)
262 2dha_A FLJ20171 protein; RRM d 99.6 5E-15 1.7E-19 129.6 8.1 83 424-513 22-108 (123)
263 2ytc_A PRE-mRNA-splicing facto 99.6 1.4E-14 4.8E-19 118.7 10.1 78 211-294 7-85 (85)
264 2krb_A Eukaryotic translation 99.6 3.7E-15 1.3E-19 120.9 6.5 72 217-290 2-80 (81)
265 1x4f_A Matrin 3; structural ge 99.6 7.3E-15 2.5E-19 125.5 8.6 80 213-298 22-104 (112)
266 2krb_A Eukaryotic translation 99.6 2.9E-15 9.8E-20 121.6 5.8 72 426-504 2-80 (81)
267 2jvr_A Nucleolar protein 3; RN 99.6 7.3E-15 2.5E-19 126.0 8.6 80 213-296 25-105 (111)
268 2cpj_A Non-POU domain-containi 99.6 1.3E-14 4.5E-19 122.6 10.1 81 212-298 11-91 (99)
269 2la4_A Nuclear and cytoplasmic 99.6 7.5E-15 2.6E-19 124.7 8.6 76 424-510 26-101 (101)
270 1nu4_A U1A RNA binding domain; 99.6 5.6E-15 1.9E-19 124.4 7.7 83 422-512 5-91 (97)
271 2fc8_A NCL protein; structure 99.6 2.2E-14 7.5E-19 122.0 11.3 84 212-298 11-94 (102)
272 2jvo_A Nucleolar protein 3; nu 99.6 1.1E-14 3.8E-19 125.0 9.5 78 421-511 27-104 (108)
273 1x4c_A Splicing factor, argini 99.6 2.1E-14 7E-19 123.5 11.2 79 212-297 11-94 (108)
274 1x4g_A Nucleolysin TIAR; struc 99.6 1.3E-14 4.4E-19 125.0 9.9 79 422-511 22-100 (109)
275 1why_A Hypothetical protein ri 99.5 1.8E-14 6E-19 121.3 10.5 80 212-297 13-94 (97)
276 1wel_A RNA-binding protein 12; 99.5 4E-15 1.4E-19 131.5 6.7 84 213-297 22-105 (124)
277 2cpd_A Apobec-1 stimulating pr 99.5 3.9E-14 1.3E-18 119.7 12.4 77 422-511 12-90 (99)
278 2dgt_A RNA-binding protein 30; 99.5 2.7E-14 9.1E-19 118.9 11.2 77 422-511 7-83 (92)
279 2dnn_A RNA-binding protein 12; 99.5 1.1E-14 3.8E-19 124.6 8.8 80 215-297 15-94 (109)
280 1nu4_A U1A RNA binding domain; 99.5 8.7E-15 3E-19 123.2 7.9 83 212-297 4-90 (97)
281 2xs2_A Deleted in azoospermia- 99.5 4.9E-15 1.7E-19 126.1 6.4 81 424-512 8-88 (102)
282 2hgn_A Heterogeneous nuclear r 99.5 2.5E-15 8.5E-20 134.4 4.7 121 173-297 2-124 (139)
283 1iqt_A AUF1, heterogeneous nuc 99.5 2.7E-15 9.3E-20 119.8 4.4 75 218-293 1-75 (75)
284 2la4_A Nuclear and cytoplasmic 99.5 1.1E-14 3.8E-19 123.6 8.3 78 213-296 24-101 (101)
285 3q2s_C Cleavage and polyadenyl 99.5 1E-14 3.5E-19 142.8 9.3 84 424-512 67-152 (229)
286 2dgt_A RNA-binding protein 30; 99.5 7E-14 2.4E-18 116.4 12.6 79 212-298 6-84 (92)
287 1x4g_A Nucleolysin TIAR; struc 99.5 2.8E-14 9.6E-19 122.9 10.5 80 213-298 22-101 (109)
288 2lcw_A RNA-binding protein FUS 99.3 6.3E-16 2.1E-20 135.0 0.0 84 423-511 5-96 (116)
289 2lmi_A GRSF-1, G-rich sequence 99.5 6E-15 2.1E-19 126.6 6.2 83 212-296 7-92 (107)
290 1fjc_A Nucleolin RBD2, protein 99.5 1.6E-14 5.6E-19 121.3 8.7 79 423-511 14-92 (96)
291 2dgu_A Heterogeneous nuclear r 99.5 3E-14 1E-18 121.3 10.4 75 424-511 10-84 (103)
292 1whx_A Hypothetical protein ri 99.5 1.8E-14 6E-19 124.4 9.0 76 215-296 9-84 (111)
293 2dnp_A RNA-binding protein 14; 99.5 2.9E-14 9.8E-19 118.2 9.8 77 422-511 6-82 (90)
294 2e5j_A Methenyltetrahydrofolat 99.5 2.1E-14 7.2E-19 120.8 9.1 80 213-297 16-95 (97)
295 2hgm_A HNRPF protein, heteroge 99.5 7.9E-15 2.7E-19 128.5 6.2 80 423-510 40-121 (126)
296 2dgu_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 119.8 11.3 79 212-298 7-85 (103)
297 2cpx_A Hypothetical protein FL 99.5 7.3E-15 2.5E-19 128.0 6.0 86 213-298 22-107 (115)
298 2xnq_A Nuclear polyadenylated 99.5 5.4E-14 1.8E-18 118.2 11.1 77 212-296 18-95 (97)
299 3egn_A RNA-binding protein 40; 99.5 5.6E-15 1.9E-19 134.1 5.4 85 422-511 42-131 (143)
300 2jvo_A Nucleolar protein 3; nu 99.5 3.4E-14 1.2E-18 121.9 9.9 78 212-297 27-104 (108)
301 2dnp_A RNA-binding protein 14; 99.5 5.8E-14 2E-18 116.3 11.0 78 212-297 5-82 (90)
302 2j8a_A Histone-lysine N-methyl 99.5 2.7E-14 9.2E-19 122.1 8.9 80 426-510 3-96 (136)
303 1fj7_A Nucleolin RBD1, protein 99.5 2.6E-15 8.8E-20 127.5 2.7 83 213-297 14-96 (101)
304 3q2s_C Cleavage and polyadenyl 99.5 1.5E-14 5.2E-19 141.7 8.4 82 215-296 67-150 (229)
305 2f3j_A RNA and export factor b 99.5 3.1E-14 1.1E-18 133.6 9.8 85 421-511 84-168 (177)
306 2e44_A Insulin-like growth fac 99.5 2.6E-14 8.9E-19 120.0 8.3 79 424-511 14-93 (96)
307 2hgn_A Heterogeneous nuclear r 99.5 4.1E-15 1.4E-19 133.0 3.5 81 423-511 44-124 (139)
308 1whx_A Hypothetical protein ri 99.5 1.7E-14 5.8E-19 124.5 7.2 75 425-510 10-84 (111)
309 1fjc_A Nucleolin RBD2, protein 99.5 2.5E-14 8.7E-19 120.1 8.0 81 212-297 12-92 (96)
310 3zzy_A Polypyrimidine tract-bi 99.5 7.1E-14 2.4E-18 122.3 10.9 80 214-298 26-108 (130)
311 1wf1_A RNA-binding protein RAL 99.5 5.6E-14 1.9E-18 121.3 10.2 75 423-510 25-100 (110)
312 2lcw_A RNA-binding protein FUS 99.3 1.4E-15 4.7E-20 132.8 0.0 86 213-298 4-97 (116)
313 2kvi_A Nuclear polyadenylated 99.5 2.1E-14 7.3E-19 120.5 7.3 77 422-511 7-84 (96)
314 2cqh_A IGF-II mRNA-binding pro 99.5 2.3E-14 7.9E-19 119.6 7.5 76 424-511 7-84 (93)
315 2j8a_A Histone-lysine N-methyl 99.5 2.9E-14 9.9E-19 121.9 8.0 78 217-294 3-94 (136)
316 2xs2_A Deleted in azoospermia- 99.5 1.6E-14 5.6E-19 122.8 6.5 82 214-298 7-88 (102)
317 2cqh_A IGF-II mRNA-binding pro 99.5 4.3E-14 1.5E-18 117.9 8.6 80 212-298 4-85 (93)
318 2cq2_A Hypothetical protein LO 99.5 5.2E-14 1.8E-18 120.2 9.0 81 212-298 21-108 (114)
319 2kvi_A Nuclear polyadenylated 99.5 4.5E-14 1.5E-18 118.5 8.6 78 212-297 6-84 (96)
320 2dha_A FLJ20171 protein; RRM d 99.5 2.1E-14 7.3E-19 125.5 6.7 81 214-296 21-105 (123)
321 2cpd_A Apobec-1 stimulating pr 99.5 1.6E-13 5.4E-18 115.9 11.9 78 212-297 11-90 (99)
322 2diu_A KIAA0430 protein; struc 99.5 3.8E-14 1.3E-18 114.5 7.5 74 424-512 7-86 (96)
323 2cq2_A Hypothetical protein LO 99.5 3.9E-14 1.3E-18 121.0 8.0 79 422-511 22-107 (114)
324 3d2w_A TAR DNA-binding protein 99.5 7.4E-14 2.5E-18 115.2 9.1 78 422-511 8-85 (89)
325 2f3j_A RNA and export factor b 99.5 6.7E-14 2.3E-18 131.3 10.0 85 212-297 84-168 (177)
326 2hgm_A HNRPF protein, heteroge 99.5 3.9E-14 1.3E-18 124.1 7.7 82 212-296 38-121 (126)
327 2pe8_A Splicing factor 45; RRM 99.5 1.6E-13 5.4E-18 116.7 11.3 82 423-509 6-93 (105)
328 1sjr_A Polypyrimidine tract-bi 99.5 9.3E-14 3.2E-18 126.2 10.3 82 213-298 43-126 (164)
329 1x5p_A Negative elongation fac 99.5 2.6E-13 8.7E-18 114.1 12.3 76 423-511 13-88 (97)
330 1wg1_A KIAA1579 protein, homol 99.5 7.2E-14 2.5E-18 115.2 8.7 74 425-510 5-78 (88)
331 2e5g_A U6 snRNA-specific termi 99.5 1.3E-13 4.5E-18 115.2 10.4 79 213-297 5-83 (94)
332 1wg1_A KIAA1579 protein, homol 99.5 8.2E-14 2.8E-18 114.9 9.0 76 215-297 4-79 (88)
333 2e44_A Insulin-like growth fac 99.5 7.6E-14 2.6E-18 117.2 8.9 81 213-297 12-93 (96)
334 2e5g_A U6 snRNA-specific termi 99.5 8.3E-14 2.9E-18 116.4 9.0 76 425-511 8-83 (94)
335 1x5p_A Negative elongation fac 99.5 2.9E-13 9.8E-18 113.8 12.3 79 212-298 11-89 (97)
336 2diu_A KIAA0430 protein; struc 99.5 1.6E-13 5.4E-18 110.9 9.9 75 215-299 8-87 (96)
337 3zzy_A Polypyrimidine tract-bi 99.5 1.9E-13 6.4E-18 119.6 11.3 76 426-511 29-107 (130)
338 1wf1_A RNA-binding protein RAL 99.5 1.4E-13 4.8E-18 118.7 10.2 77 213-297 24-101 (110)
339 1sjr_A Polypyrimidine tract-bi 99.5 1.4E-13 4.8E-18 125.0 10.5 78 425-511 46-125 (164)
340 3d2w_A TAR DNA-binding protein 99.5 1.8E-13 6.3E-18 112.8 9.8 77 212-297 7-85 (89)
341 3egn_A RNA-binding protein 40; 99.5 3.3E-14 1.1E-18 129.0 5.5 83 212-297 41-131 (143)
342 2voo_A Lupus LA protein; RNA-b 99.5 4.7E-13 1.6E-17 127.5 13.5 114 181-296 63-187 (193)
343 2e5i_A Heterogeneous nuclear r 99.5 5.7E-13 1.9E-17 116.1 12.8 74 427-511 27-103 (124)
344 2e5i_A Heterogeneous nuclear r 99.4 4.2E-13 1.4E-17 116.9 11.0 76 217-298 26-104 (124)
345 2pe8_A Splicing factor 45; RRM 99.4 3.3E-13 1.1E-17 114.7 10.0 83 213-295 5-93 (105)
346 2dnl_A Cytoplasmic polyadenyla 99.4 1.6E-13 5.5E-18 119.1 8.1 78 424-509 7-87 (114)
347 2dnl_A Cytoplasmic polyadenyla 99.4 2.7E-13 9.4E-18 117.6 9.5 78 213-293 5-85 (114)
348 2hzc_A Splicing factor U2AF 65 99.4 2.4E-13 8.1E-18 111.8 8.6 71 424-506 5-86 (87)
349 3beg_B Splicing factor, argini 99.4 1.2E-13 4.2E-18 119.9 6.6 75 424-510 15-94 (115)
350 3beg_B Splicing factor, argini 99.4 2.2E-13 7.4E-18 118.4 7.4 76 214-296 14-94 (115)
351 2bz2_A Negative elongation fac 99.4 3.5E-13 1.2E-17 118.0 8.1 78 421-511 35-112 (121)
352 1wf0_A TDP-43, TAR DNA-binding 99.4 1.9E-13 6.6E-18 112.6 5.7 75 425-511 5-79 (88)
353 2hzc_A Splicing factor U2AF 65 99.4 5E-13 1.7E-17 109.9 8.1 72 214-292 4-86 (87)
354 1wf0_A TDP-43, TAR DNA-binding 99.4 4.6E-13 1.6E-17 110.3 7.3 78 214-298 3-80 (88)
355 2voo_A Lupus LA protein; RNA-b 99.4 1.1E-12 3.9E-17 124.8 10.9 78 425-509 109-186 (193)
356 2bz2_A Negative elongation fac 99.4 1E-12 3.5E-17 115.0 9.2 79 212-298 35-113 (121)
357 3v4m_A Splicing factor U2AF 65 99.4 9.6E-13 3.3E-17 111.8 8.7 83 423-510 3-97 (105)
358 2dit_A HIV TAT specific factor 99.4 4.1E-12 1.4E-16 109.7 11.3 81 422-511 12-103 (112)
359 3ue2_A Poly(U)-binding-splicin 99.4 1.9E-12 6.6E-17 112.1 9.1 81 424-509 19-108 (118)
360 3u1l_A PRE-mRNA-splicing facto 99.3 1.4E-12 4.7E-17 126.8 7.9 78 423-511 132-230 (240)
361 2dit_A HIV TAT specific factor 99.3 6.8E-12 2.3E-16 108.3 11.4 84 212-299 11-105 (112)
362 3u1l_A PRE-mRNA-splicing facto 99.3 1.9E-12 6.5E-17 125.8 8.3 79 213-297 131-230 (240)
363 3v4m_A Splicing factor U2AF 65 99.3 5.3E-12 1.8E-16 107.2 8.9 82 214-295 3-96 (105)
364 1jmt_A Splicing factor U2AF 35 99.3 2.4E-12 8.1E-17 109.3 4.4 72 221-293 20-103 (104)
365 3ue2_A Poly(U)-binding-splicin 99.3 1.6E-11 5.5E-16 106.3 9.6 81 215-295 19-108 (118)
366 1jmt_A Splicing factor U2AF 35 99.3 2.6E-12 8.8E-17 109.0 4.4 72 430-507 20-103 (104)
367 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.1E-10 3.8E-15 97.7 9.8 75 425-511 10-91 (100)
368 3s6e_A RNA-binding protein 39; 99.1 9.9E-11 3.4E-15 100.5 9.0 79 423-510 5-93 (114)
369 3s6e_A RNA-binding protein 39; 99.1 2.1E-10 7.3E-15 98.4 10.1 79 213-295 4-92 (114)
370 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.8E-10 9.5E-15 95.2 10.5 75 216-297 10-91 (100)
371 3tht_A Alkylated DNA repair pr 99.1 2.4E-10 8.4E-15 117.2 9.4 77 421-508 14-97 (345)
372 3tht_A Alkylated DNA repair pr 99.0 3.4E-10 1.2E-14 116.1 9.3 77 212-294 14-97 (345)
373 1owx_A Lupus LA protein, SS-B, 98.9 1.6E-09 5.4E-14 93.0 7.3 78 422-508 15-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 98.9 6.5E-09 2.2E-13 83.2 8.5 73 423-509 5-85 (91)
375 2dnr_A Synaptojanin-1; RRM dom 98.8 1.6E-08 5.4E-13 81.0 9.0 76 213-297 4-87 (91)
376 1owx_A Lupus LA protein, SS-B, 98.8 2.2E-08 7.4E-13 85.9 10.1 77 211-293 13-93 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.6 3.3E-08 1.1E-12 79.5 5.9 73 422-508 12-93 (95)
378 3dxb_A Thioredoxin N-terminall 98.6 1.2E-07 4.1E-12 92.3 9.6 78 426-508 125-211 (222)
379 3dxb_A Thioredoxin N-terminall 98.5 1.8E-07 6.1E-12 91.1 9.1 67 228-294 141-211 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.5 8E-08 2.7E-12 77.2 4.4 74 212-294 11-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.4 2.1E-06 7.3E-11 70.1 9.7 72 425-507 21-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.1 1.5E-05 5.1E-10 65.2 8.7 74 213-292 18-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.7 0.00015 5.2E-09 59.0 8.6 72 425-510 8-84 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.7 0.0003 1E-08 57.2 10.1 74 214-296 6-84 (104)
385 1wey_A Calcipressin 1; structu 97.4 0.0003 1E-08 57.5 6.8 73 426-509 6-83 (104)
386 1wey_A Calcipressin 1; structu 97.4 0.00042 1.4E-08 56.7 7.5 76 216-297 5-85 (104)
387 1uw4_A UPF3X; nonsense mediate 97.3 0.00077 2.6E-08 54.3 8.0 84 578-674 2-87 (91)
388 1whv_A Poly(A)-specific ribonu 97.1 0.0018 6.1E-08 52.0 7.7 59 212-279 12-70 (100)
389 1whv_A Poly(A)-specific ribonu 96.8 0.0036 1.2E-07 50.2 7.6 60 576-658 14-73 (100)
390 1uw4_A UPF3X; nonsense mediate 96.8 0.0037 1.3E-07 50.3 7.8 68 426-498 2-71 (91)
391 1wwh_A Nucleoporin 35, nucleop 96.6 0.0046 1.6E-07 52.1 7.0 74 213-294 21-95 (119)
392 3ctr_A Poly(A)-specific ribonu 96.5 0.0019 6.6E-08 52.0 3.9 55 216-279 6-60 (101)
393 1wwh_A Nucleoporin 35, nucleop 96.3 0.018 6.2E-07 48.4 9.1 70 119-205 22-92 (119)
394 2l08_A Regulator of nonsense t 96.2 0.011 3.7E-07 47.8 6.9 78 216-293 9-93 (97)
395 3ctr_A Poly(A)-specific ribonu 95.9 0.0078 2.7E-07 48.5 4.4 56 579-658 8-63 (101)
396 3p3d_A Nucleoporin 53; structu 95.7 0.008 2.7E-07 51.3 4.1 79 215-295 6-98 (132)
397 2l08_A Regulator of nonsense t 95.2 0.021 7.3E-07 46.1 4.6 69 425-498 9-79 (97)
398 3p3d_A Nucleoporin 53; structu 93.7 0.059 2E-06 46.0 4.3 76 426-508 8-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 92.8 0.045 1.6E-06 57.9 2.8 56 216-277 53-108 (464)
400 3pq1_A Poly(A) RNA polymerase; 92.4 0.071 2.4E-06 56.4 3.6 55 426-486 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 81.0 2.9 0.0001 45.0 7.7 57 579-659 442-498 (507)
402 3d45_A Poly(A)-specific ribonu 78.6 5.3 0.00018 43.0 8.7 57 214-279 438-494 (507)
403 4eyt_A Telomerase associated p 50.8 84 0.0029 24.3 7.9 57 424-488 11-67 (129)
404 4eyt_A Telomerase associated p 35.1 1.5E+02 0.0053 22.8 7.7 58 214-279 10-67 (129)
405 4e8u_A Putative uncharacterize 31.3 83 0.0029 28.0 5.9 48 217-267 13-71 (172)
406 4e8u_A Putative uncharacterize 26.7 1.2E+02 0.004 27.1 6.0 56 577-648 12-76 (172)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.7e-42 Score=351.83 Aligned_cols=249 Identities=20% Similarity=0.263 Sum_probs=225.7
Q ss_pred cccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 005812 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (676)
Q Consensus 118 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (676)
....++|||+|||+++++++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|+..|||..+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 82 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---------------DKYKGTAFVTLLNGEQAEAAINAFHQSRL 82 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---------------ETTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---------------ecCCCEEEEEeCCHHHHHHHHHHcCCCee
Confidence 34668999999999999999999999999 999884 46789999999999999999999999999
Q ss_pred cCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 005812 198 KGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (676)
Q Consensus 198 ~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (676)
.|+.|.+... ...++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..
T Consensus 83 ~g~~i~v~~~------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 83 RERELSVQLQ------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp TTEECEEEEC------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEEec------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHH
Confidence 9999999753 3567999999999999999999999999999999999988999999999999999999999999
Q ss_pred hCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHH
Q 005812 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIA 357 (676)
Q Consensus 278 l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (676)
|+|..+.|+.|.|.|+.+.....
T Consensus 157 l~~~~~~g~~i~v~~a~~~~~~~--------------------------------------------------------- 179 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAGQLTP--------------------------------------------------------- 179 (284)
T ss_dssp HTTCEETTEECEEEECCGGGCCT---------------------------------------------------------
T ss_pred hCCCEeCCcEEEEEECCCCCCCc---------------------------------------------------------
Confidence 99999999999999986542100
Q ss_pred HHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCC
Q 005812 358 RKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL 437 (676)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~ 437 (676)
.....++|||+|||+.+
T Consensus 180 ---------------------------------------------------------------~~~~~~~l~v~nlp~~~ 196 (284)
T 3smz_A 180 ---------------------------------------------------------------ALLHSRCLCVDRLPPGF 196 (284)
T ss_dssp ---------------------------------------------------------------TTTSCSEEEEECCCTTC
T ss_pred ---------------------------------------------------------------ccCCccEEEEecCCccc
Confidence 11124799999999995
Q ss_pred -CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhh
Q 005812 438 -DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAH 514 (676)
Q Consensus 438 -teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~ 514 (676)
++++|+++|+.||.|.++.|+.+. +|.++|+|||+|.+.++|.+|+..|| |..|+|++|.|.|+.++....
T Consensus 197 ~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 197 NDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD-----GLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp CCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEECCSSSCHH
T ss_pred CCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC-----CCccCCeEEEEEEecCCCccc
Confidence 999999999999999999998885 78999999999999999999999999 999999999999999887543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7.6e-42 Score=352.40 Aligned_cols=253 Identities=19% Similarity=0.273 Sum_probs=214.2
Q ss_pred hhcccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCC
Q 005812 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 195 (676)
Q Consensus 116 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~ 195 (676)
...+..++|||+|||+++++++|+++|+.||.|.+|.++.++. .++|||||+|.+.++|.+|+. +|+.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------~~~g~afV~f~~~~~A~~A~~-~~~~ 103 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-----------KNFRFARIEFARYDGALAAIT-KTHK 103 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------SSSEEEEEEESSHHHHHHHHT-TTTC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----------CCcEEEEEEECCHHHHHHHHH-hCCc
Confidence 3456788999999999999999999999999999999886542 258999999999999999995 9999
Q ss_pred eecCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEcccCCCCCceeEEEEEecCHHHHHHH
Q 005812 196 EIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274 (676)
Q Consensus 196 ~~~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 274 (676)
.+.|+.|.+... ..++|||+|||+.+++++|+++|+.|| .|..|.++.+.. |.++|||||+|.+.++|.+|
T Consensus 104 ~~~g~~i~v~~~-------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 104 VVGQNEIIVSHL-------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp EETTEECEEEEC-------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred EeCCcEEEEEEC-------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 999999999643 578999999999999999999999999 999999998864 77999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHH
Q 005812 275 IQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEV 354 (676)
Q Consensus 275 ~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (676)
+..|+|..+.|+.|.|.|+.+.......
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~~~~---------------------------------------------------- 203 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKSKRT---------------------------------------------------- 203 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC----------------------------------------------------------
T ss_pred HHHhCCCEeCCcEEEEEECCCCcccccc----------------------------------------------------
Confidence 9999999999999999999765321000
Q ss_pred HHHHHHhhcccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCC
Q 005812 355 DIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP 434 (676)
Q Consensus 355 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp 434 (676)
......+++|||+|||
T Consensus 204 ----------------------------------------------------------------~~~~~~~~~l~v~nlp 219 (292)
T 2ghp_A 204 ----------------------------------------------------------------DSATLEGREIMIRNLS 219 (292)
T ss_dssp -------------------------------------------------------------------CCTTTEEEEEEEC
T ss_pred ----------------------------------------------------------------cccCCCCceEEEECCC
Confidence 0011235799999999
Q ss_pred CC-CCHHHHHHHHHhCCceeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCc
Q 005812 435 FD-LDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (676)
Q Consensus 435 ~~-~teedl~~~F~~~G~v~~v~i~~~~~-~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k 510 (676)
+. +++++|+++|+.||.|..|+++.+.. ++.++|||||+|.+.++|.+|+ .|| |..|+|++|.|.||.+|
T Consensus 220 ~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~-----g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 220 TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN-----RSLLGNREISVSLADKK 291 (292)
T ss_dssp TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT-----TEEETTEEEEEEECCCC
T ss_pred cccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc-----CCEECCcEEEEEEecCC
Confidence 99 99999999999999999999988765 5899999999999999999999 999 99999999999999876
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=6.1e-40 Score=336.74 Aligned_cols=243 Identities=20% Similarity=0.240 Sum_probs=215.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
..++|||+|||.++++++|+++|+.|| |.+|.+. +++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~------~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD------KYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE------TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe------cCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 567999999999999999999999999 9999883 378999999999999999999999999999999999853
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
+
T Consensus 94 ~------------------------------------------------------------------------------- 94 (284)
T 3smz_A 94 T------------------------------------------------------------------------------- 94 (284)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
.++|||+|||+.+++++|+++|+.||.|..
T Consensus 95 --------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~ 124 (284)
T 3smz_A 95 --------------------------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLER 124 (284)
T ss_dssp --------------------------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred --------------------------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeE
Confidence 258999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhhhhcccccccCccccc
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLA 534 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~ 534 (676)
++++.+..+|.++|||||+|.+.++|.+|+..|+ |..++|+.|.|.++.++....
T Consensus 125 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----~~~~~g~~i~v~~a~~~~~~~-------------------- 179 (284)
T 3smz_A 125 CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL-----GKPLGPRTLYVHWTDAGQLTP-------------------- 179 (284)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECCGGGCCT--------------------
T ss_pred EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEeCCcEEEEEECCCCCCCc--------------------
Confidence 9999998899999999999999999999999999 999999999999987642110
Q ss_pred ccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecCCccc-CHHHHHHHHHHHHHhhhcccCCCc
Q 005812 535 KEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSM-TEKGLKKLCIDAVVSRASKQKPVI 613 (676)
Q Consensus 535 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nlp~~~-te~~l~~~F~~~~~~~~~~~~G~V 613 (676)
.....++|||+|||..+ |+++|+++|+ .||.|
T Consensus 180 --------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~---------~~G~i 212 (284)
T 3smz_A 180 --------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALS---------AVHSP 212 (284)
T ss_dssp --------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTC---------SSSCC
T ss_pred --------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhh---------CCCCe
Confidence 00134789999999995 9999999999 69999
Q ss_pred eEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCCCCcccCccccccccc
Q 005812 614 KQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSKLFYHHCFDAADAQCK 675 (676)
Q Consensus 614 ~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~~~~~~~~~~~~~~~~ 675 (676)
.+|+|++++ + +.++|+|||+|.++++|.+|+..|||..+ ..+++.|.+|..+
T Consensus 213 ~~v~i~~~~-~------g~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~l~v~~a~~~ 264 (284)
T 3smz_A 213 TFCQLACGQ-D------GQLKGFAVLEYETAEMAEEAQQQADGLSL---GGSHLRVSFCAPG 264 (284)
T ss_dssp SEEEEEECS-S------CCEEEEEEEECSSHHHHHHHHHHHTTCEE---TTEECEEEECCSS
T ss_pred EEEEEEECC-C------CCcccEEEEEeCCHHHHHHHHHHhCCCcc---CCeEEEEEEecCC
Confidence 999999885 2 58899999999999999999999999754 3367788887654
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.9e-39 Score=334.43 Aligned_cols=252 Identities=17% Similarity=0.222 Sum_probs=210.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+++++++|+++|+.||.|.+|.|+++... ++|||||+|.+.++|.+|++ ++|..+.|+.|.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3456789999999999999999999999999999999997633 57999999999999999996 89999999999999
Q ss_pred EecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCC
Q 005812 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (676)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 371 (676)
++.
T Consensus 114 ~~~----------------------------------------------------------------------------- 116 (292)
T 2ghp_A 114 HLT----------------------------------------------------------------------------- 116 (292)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ECC-----------------------------------------------------------------------------
Confidence 852
Q ss_pred CCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCC-
Q 005812 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG- 450 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G- 450 (676)
.++|||+|||+.+++++|+++|+.||
T Consensus 117 -----------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~ 143 (292)
T 2ghp_A 117 -----------------------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINV 143 (292)
T ss_dssp -----------------------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTC
T ss_pred -----------------------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCC
Confidence 26899999999999999999999999
Q ss_pred ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhhhHhhhhhcccccccCc
Q 005812 451 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRN 530 (676)
Q Consensus 451 ~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~ 530 (676)
.|..|.++.+.. +.++|||||+|.+.++|.+|+..|+ |..|+|+.|.|.++.++......
T Consensus 144 ~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~~~~~~~~-------------- 203 (292)
T 2ghp_A 144 VALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLN-----GLKIEGYTLVTKVSNPLEKSKRT-------------- 203 (292)
T ss_dssp CCCEEECC--------CCEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEECCCC--------------------
T ss_pred CeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhC-----CCEeCCcEEEEEECCCCcccccc--------------
Confidence 999999988764 7889999999999999999999999 99999999999998865422100
Q ss_pred ccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCeEEEecCCcc-cCHHHHHHHHHHHHHhhhccc
Q 005812 531 LYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKS-MTEKGLKKLCIDAVVSRASKQ 609 (676)
Q Consensus 531 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~V~nlp~~-~te~~l~~~F~~~~~~~~~~~ 609 (676)
.......++|||+|||.. +|+++|+++|+ .
T Consensus 204 ----------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~---------~ 234 (292)
T 2ghp_A 204 ----------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFE---------G 234 (292)
T ss_dssp -------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHG---------G
T ss_pred ----------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHh---------c
Confidence 000113478999999999 99999999999 6
Q ss_pred CCCceEeeeeeccc-cCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCCCCCcccCccccccccc
Q 005812 610 KPVIKQIKFLQSLK-KGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPSKLFYHHCFDAADAQCK 675 (676)
Q Consensus 610 ~G~V~~v~i~~~~~-~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~~~~~~~~~~~~~~~~~ 675 (676)
||.|..|+++++.. + +.++|+|||+|.++++|.+|+ .|||..+ ..+++.|.+|+.|
T Consensus 235 ~G~v~~v~i~~~~~~t------g~~~g~afV~F~~~~~A~~A~-~l~g~~~---~g~~i~V~~a~~k 291 (292)
T 2ghp_A 235 FGSIEKINIPAGQKEH------SFNNCCAFMVFENKDSAERAL-QMNRSLL---GNREISVSLADKK 291 (292)
T ss_dssp GSCEEEEECCSCCC---------CCCEEEEEEESSHHHHHHHG-GGTTEEE---TTEEEEEEECCCC
T ss_pred cCCeeEEEEEecCCcC------CCCceEEEEEeCCHHHHHHHH-HhcCCEE---CCcEEEEEEecCC
Confidence 99999999998754 2 488999999999999999999 9999743 2488889998876
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=1.3e-31 Score=262.21 Aligned_cols=173 Identities=27% Similarity=0.410 Sum_probs=154.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
..+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCC
Q 005812 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (676)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 372 (676)
+......
T Consensus 92 ~~~~~~~------------------------------------------------------------------------- 98 (213)
T 4f02_A 92 SQRDPSL------------------------------------------------------------------------- 98 (213)
T ss_dssp CCCCTHH-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7543210
Q ss_pred CCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCce
Q 005812 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v 452 (676)
......+|||+|||+.+++++|+++|+.||.|
T Consensus 99 ------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 130 (213)
T 4f02_A 99 ------------------------------------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 130 (213)
T ss_dssp ------------------------------------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred ------------------------------------------------cccccccceECCcccccHHHHHHHHHhhcCCe
Confidence 00013689999999999999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhh
Q 005812 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513 (676)
Q Consensus 453 ~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~ 513 (676)
..|+|+.+. +.++|||||+|.+.++|.+|++.|| |..|+|++|.|.+|.++...
T Consensus 131 ~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln-----g~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 131 LSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN-----GMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp EEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECCCHHHH
T ss_pred EEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEEEEcCCCccc
Confidence 999999885 4579999999999999999999999 99999999999999987643
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.1e-30 Score=245.74 Aligned_cols=165 Identities=27% Similarity=0.491 Sum_probs=153.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 5421
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
..+.++|||+|||..+++++|+++|++||.|..
T Consensus 86 -----------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 118 (168)
T 1b7f_A 86 -----------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 118 (168)
T ss_dssp -----------------------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE
T ss_pred -----------------------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE
Confidence 112369999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC--cEEEEEEc
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKA 507 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g--r~l~v~~a 507 (676)
+.++++..++.++|||||+|.+.++|.+|+..|| |..+.| ++|.|.||
T Consensus 119 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 119 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALN-----NVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCCCTTCSSCCEEEEC
T ss_pred EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc-----CCEecCCCeEEEEEeC
Confidence 9999998889999999999999999999999999 999988 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2e-30 Score=243.51 Aligned_cols=165 Identities=27% Similarity=0.485 Sum_probs=152.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
+.++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
+...
T Consensus 81 ~~~~---------------------------------------------------------------------------- 84 (167)
T 1fxl_A 81 PSSA---------------------------------------------------------------------------- 84 (167)
T ss_dssp CCCG----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 5421
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
....++|||+|||..+++++|+++|++||.|..
T Consensus 85 -----------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 117 (167)
T 1fxl_A 85 -----------------------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 117 (167)
T ss_dssp -----------------------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred -----------------------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeE
Confidence 011368999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE--EEEEEc
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ--LTVLKA 507 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~--l~v~~a 507 (676)
++++.+..+|.++|||||+|.+.++|.+|++.|| |..|.|+. |.|.||
T Consensus 118 ~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 118 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-----GQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCCCTTCSSCCEEEEC
T ss_pred EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc-----CCccCCCccceEEEeC
Confidence 9999998889999999999999999999999999 99999974 888875
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=2e-30 Score=250.44 Aligned_cols=180 Identities=19% Similarity=0.328 Sum_probs=153.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
......++|||+|||+++++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3455678999999999999999999999999999999999988999999999999999999999986 999999999999
Q ss_pred EEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCC
Q 005812 291 DWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 370 (676)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 370 (676)
.++.+......
T Consensus 87 ~~~~~~~~~~~--------------------------------------------------------------------- 97 (196)
T 1l3k_A 87 KRAVSREDSQR--------------------------------------------------------------------- 97 (196)
T ss_dssp EECCC---------------------------------------------------------------------------
T ss_pred ecccCcccccc---------------------------------------------------------------------
Confidence 99865421000
Q ss_pred CCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCC
Q 005812 371 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 450 (676)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G 450 (676)
.......++|||+|||+.+++++|+++|+.||
T Consensus 98 ------------------------------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 129 (196)
T 1l3k_A 98 ------------------------------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 129 (196)
T ss_dssp -----------------------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTS
T ss_pred ------------------------------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCC
Confidence 00111247999999999999999999999999
Q ss_pred ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCchhhh
Q 005812 451 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAH 514 (676)
Q Consensus 451 ~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~~~~ 514 (676)
.|..|.++.+..++.++|||||+|.+.++|.+|+.. + +..|+|+.|.|.+|.++....
T Consensus 130 ~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~-----~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K-----YHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S-----CCEETTEECEEEECC------
T ss_pred CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C-----CcEECCEEEEEEecCChhHhc
Confidence 999999999988899999999999999999999976 7 899999999999999886543
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-30 Score=242.29 Aligned_cols=165 Identities=23% Similarity=0.380 Sum_probs=151.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
++|||+|||.++++++|+++|+.||.|.+|.++.++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999886 5779999999999999999999999999999999999998654
Q ss_pred CCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCCCC
Q 005812 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 376 (676)
...
T Consensus 80 ~~~----------------------------------------------------------------------------- 82 (166)
T 3md3_A 80 QQS----------------------------------------------------------------------------- 82 (166)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred ccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEE
Q 005812 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 456 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~ 456 (676)
...+.++|||+|||+.+++++|+++|++||.|..+.
T Consensus 83 --------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 83 --------------------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp --------------------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred --------------------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 111247999999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEcc
Q 005812 457 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (676)
Q Consensus 457 i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~ 508 (676)
++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||.
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-----GQDLNGRPLRINWAA 165 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEEESC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-----CCccCCcEEEEEecC
Confidence 99998899999999999999999999999999 999999999999985
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=238.02 Aligned_cols=164 Identities=20% Similarity=0.359 Sum_probs=151.0
Q ss_pred cEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCeE
Q 005812 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (676)
Q Consensus 122 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~ 201 (676)
|+|||+|||+++++++|+++|+.||.|.++.++.++ .|+++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~----------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK----------NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC----------C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC----------CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 589999999999999999999999999999998764 3788999999999999999999999999999999
Q ss_pred EEEecCCC--CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 005812 202 VWARQLGG--EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (676)
Q Consensus 202 i~v~~~~~--~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (676)
+.+..... .......++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..||
T Consensus 71 i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 71 VKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp CEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 99875433 2345567899999999999999999999999999999999998899999999999999999999999999
Q ss_pred CceeCCeeEEEEEecC
Q 005812 280 GQKFGKRPIAVDWAVP 295 (676)
Q Consensus 280 ~~~~~g~~i~v~~a~~ 295 (676)
|..+.|+.|.|.|+.+
T Consensus 151 g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 151 GQDLNGRPLRINWAAK 166 (166)
T ss_dssp TCEETTEECEEEESCC
T ss_pred CCccCCcEEEEEecCC
Confidence 9999999999999853
No 11
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.3e-29 Score=238.26 Aligned_cols=164 Identities=18% Similarity=0.265 Sum_probs=154.0
Q ss_pred CcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 005812 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (676)
Q Consensus 121 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~ 200 (676)
.++|||+|||+++++++|+++|+.||.|.++.++.++. .|+++|||||+|.+.++|.+|+..|++..+.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK---------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT---------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC---------CCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 57899999999999999999999999999999886653 488999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 005812 201 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (676)
Q Consensus 201 ~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 280 (676)
.|.+............++|||+|||..+++++|+++|++||.|..+.++++..+|.++|||||+|.+.++|.+|++.|||
T Consensus 74 ~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 74 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 99998777666677889999999999999999999999999999999999988899999999999999999999999999
Q ss_pred ceeCC--eeEEEEEe
Q 005812 281 QKFGK--RPIAVDWA 293 (676)
Q Consensus 281 ~~~~g--~~i~v~~a 293 (676)
..+.| ++|+|.||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99977 99999986
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.1e-30 Score=245.35 Aligned_cols=165 Identities=21% Similarity=0.423 Sum_probs=151.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
+.++|||+|||+++++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 457999999999999999999999999999999999988999999999999999999999994 678999999999875
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 4310
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
..+.++|||+|||+.+++++|+++|++||.|..
T Consensus 84 -----------------------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~ 116 (167)
T 2cjk_A 84 -----------------------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIID 116 (167)
T ss_dssp -----------------------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSE
T ss_pred -----------------------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEE
Confidence 001368999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCc
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k 510 (676)
+.++.+..++.++|||||+|.+.++|.+|++ ++ +..|+|++|.|.+|.++
T Consensus 117 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-----~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 117 AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK-----FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS-----EECSSSSCEEEEECCCC
T ss_pred EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC-----CEEeCCeEEEEeecCCC
Confidence 9999998889999999999999999999997 88 99999999999999886
No 13
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=8.1e-30 Score=249.38 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=150.2
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecC
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~ 199 (676)
..++|||+|||+++++++|+++|++||+|.+|+|+.++. .|+++|||||+|.+.++|.+|+..+|+..+.|
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI---------TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC---------CCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 457999999999999999999999999999999998764 48899999999999999999999999999999
Q ss_pred eEEEEecCCCCC--CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 005812 200 GTVWARQLGGEG--SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (676)
Q Consensus 200 ~~i~v~~~~~~~--~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (676)
+.+.+....... ......+|||+|||+.+++++|+++|+.||.|..|.|+++. +.++|||||+|.+.++|.+|++.
T Consensus 85 ~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ 162 (213)
T 4f02_A 85 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 162 (213)
T ss_dssp EECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHH
T ss_pred cccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHH
Confidence 999886543222 12345789999999999999999999999999999999874 45899999999999999999999
Q ss_pred hCCceeCCeeEEEEEecCCC
Q 005812 278 FNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 278 l~~~~~~g~~i~v~~a~~~~ 297 (676)
|||..|.|+.|.|.|+.++.
T Consensus 163 lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 163 MNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HTTCEETTEECEEEECCCHH
T ss_pred hCCCEECCEEEEEEEcCCCc
Confidence 99999999999999998754
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.2e-29 Score=236.35 Aligned_cols=164 Identities=26% Similarity=0.335 Sum_probs=152.7
Q ss_pred CcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 005812 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (676)
Q Consensus 121 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~ 200 (676)
.++|||+|||+++++++|+++|+.||.|.++.++.++. .|+++|||||+|.+.++|.+|+..|++..+.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~---------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI---------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT---------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 46899999999999999999999999999999987653 488999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 005812 201 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (676)
Q Consensus 201 ~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 280 (676)
.|.+............++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||
T Consensus 73 ~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 73 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp ECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 99998776666666788999999999999999999999999999999999988999999999999999999999999999
Q ss_pred ceeCCee--EEEEEe
Q 005812 281 QKFGKRP--IAVDWA 293 (676)
Q Consensus 281 ~~~~g~~--i~v~~a 293 (676)
..+.|+. |.|.||
T Consensus 153 ~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 153 QKPSGATEPITVKFA 167 (167)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CccCCCccceEEEeC
Confidence 9999965 888875
No 15
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=4.8e-30 Score=251.80 Aligned_cols=180 Identities=25% Similarity=0.390 Sum_probs=154.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
..++|||+|||.++++++|+++|+.||.|.+|.+++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred CCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCCC
Q 005812 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 374 (676)
..... .........
T Consensus 107 ~~~~~------------------------------------------------------~~~~~~~~~------------ 120 (216)
T 2qfj_A 107 NIGQA------------------------------------------------------QPIIDQLAE------------ 120 (216)
T ss_dssp CCGGG------------------------------------------------------HHHHHHHHH------------
T ss_pred Ccccc------------------------------------------------------chhhhhhhc------------
Confidence 43210 000000000
Q ss_pred CCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE
Q 005812 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~ 454 (676)
.....++|||+|||+.+++++|+++|+.||.|..
T Consensus 121 ----------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 154 (216)
T 2qfj_A 121 ----------------------------------------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS 154 (216)
T ss_dssp ----------------------------------------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEE
T ss_pred ----------------------------------------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeE
Confidence 1112479999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 455 v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
|+++.+..++.++|||||+|.+.++|.+|+..|| |..|+|+.|.|.++.++.
T Consensus 155 v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~-----g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 155 ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-----LFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCBCSSSBCEEEECSSCS
T ss_pred EEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc-----CCEeCCcEEEEEEecCCC
Confidence 9999998899999999999999999999999999 999999999999998764
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=6.9e-30 Score=239.95 Aligned_cols=165 Identities=20% Similarity=0.286 Sum_probs=149.5
Q ss_pred cCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecC
Q 005812 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (676)
Q Consensus 120 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~ 199 (676)
..++|||+|||+++++++|+++|+.||.|.++.++.++. .|+++|||||+|.+.++|.+|+.. +..+.|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g 70 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA---------TGRSRGFGFLSFEKPSSVDEVVKT--QHILDG 70 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT---------TSSCCSCEEEEESSTHHHHHHHHS--CCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC---------CCCccceEEEEEccHHHHHHHHhc--ccccCC
Confidence 357999999999999999999999999999999987763 489999999999999999999984 678899
Q ss_pred eEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 005812 200 GTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (676)
Q Consensus 200 ~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (676)
+.+.+............++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++ ++
T Consensus 71 ~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~ 149 (167)
T 2cjk_A 71 KVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK 149 (167)
T ss_dssp EECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS
T ss_pred eEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC
Confidence 98887654433334456799999999999999999999999999999999998899999999999999999999998 89
Q ss_pred CceeCCeeEEEEEecCC
Q 005812 280 GQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 280 ~~~~~g~~i~v~~a~~~ 296 (676)
+..+.|+.|.|.|+.|+
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 99999999999999876
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=5.5e-29 Score=235.63 Aligned_cols=165 Identities=19% Similarity=0.311 Sum_probs=146.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCC--CceeEEEEEecCHHHHHHHHHHhCCceeC---CeeEE
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG--LSKGFAFVKFTCKRDAESAIQKFNGQKFG---KRPIA 289 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~i~ 289 (676)
..++|||+|||+++++++|+++|++||.|.+|.+++++.++ .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998776 89999999999999999999999998875 67788
Q ss_pred EEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCC
Q 005812 290 VDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 369 (676)
Q Consensus 290 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 369 (676)
+.++.+...
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 877644321
Q ss_pred CCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhC
Q 005812 370 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 449 (676)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~ 449 (676)
.....++|||+|||+.+++++|+++|++|
T Consensus 91 ---------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~ 119 (175)
T 3nmr_A 91 ---------------------------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSF 119 (175)
T ss_dssp ---------------------------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGG
T ss_pred ---------------------------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC
Confidence 01124799999999999999999999999
Q ss_pred CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec---CcEEEEEEc
Q 005812 450 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK---GRQLTVLKA 507 (676)
Q Consensus 450 G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~---gr~l~v~~a 507 (676)
|.|..+.++.+. +|.++|||||+|.+.++|.+|+..|| |..+. |++|.|.||
T Consensus 120 G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 120 GQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMH-----QAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT-----TSCCCTTCSSCCEEEEC
T ss_pred CCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhc-----CCcccCCCCCCeEEEec
Confidence 999999999885 58899999999999999999999999 87776 499999997
No 18
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=8.2e-29 Score=243.01 Aligned_cols=171 Identities=14% Similarity=0.237 Sum_probs=153.1
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
...++|||+|||.++++++|+++|+.||.|.+|.++.++. .|+++|||||+|.+.++|.+|+..||+..+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 96 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV---------TMKHKGFAFVEYEVPEAAQLALEQMNSVMLG 96 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C---------C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---------CCccCceEEEEeCCHHHHHHHHHHccCCeeC
Confidence 4567999999999999999999999999999999987753 4889999999999999999999999999999
Q ss_pred CeEEEEecCCCCC-----------CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecC
Q 005812 199 GGTVWARQLGGEG-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (676)
Q Consensus 199 ~~~i~v~~~~~~~-----------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 267 (676)
|+.|.|....... .....++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+
T Consensus 97 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 97 GRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp -CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 9999996543222 12345899999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEecCCCC
Q 005812 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKNI 298 (676)
Q Consensus 268 ~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~ 298 (676)
.++|.+|++.|||..|.|+.|.|.|+.++..
T Consensus 177 ~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 177 AQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999999999987643
No 19
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=1e-28 Score=238.51 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=148.7
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
...++|||+|||+++++++|+++|+.||.|.+|.++.++. .|+++|||||+|.+.++|.+|+.. ++..+.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---------~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~ 80 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN---------TKRSRGFGFVTYATVEEVDAAMNA-RPHKVD 80 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------TCCEEEEEEEEESSHHHHHHHHHT-CSCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC---------CCCccceEEEEeCCHHHHHHHHhc-CCCEEC
Confidence 4578999999999999999999999999999999987763 488999999999999999999985 999999
Q ss_pred CeEEEEecCCCCC------CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHH
Q 005812 199 GGTVWARQLGGEG------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272 (676)
Q Consensus 199 ~~~i~v~~~~~~~------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 272 (676)
|+.|.+....... .....++|||+|||+.+++++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|.
T Consensus 81 g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 81 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp TEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 9999987543221 2234589999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEecCCCCC
Q 005812 273 SAIQKFNGQKFGKRPIAVDWAVPKNIY 299 (676)
Q Consensus 273 ~A~~~l~~~~~~g~~i~v~~a~~~~~~ 299 (676)
+|+.. ++..|.|+.|.|.|+.++...
T Consensus 161 ~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 161 KIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHh-CCcEECCEEEEEEecCChhHh
Confidence 99996 899999999999999887643
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=2.3e-28 Score=230.78 Aligned_cols=158 Identities=26% Similarity=0.442 Sum_probs=143.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC----C-------ceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPV----G-------LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 283 (676)
+.++|||+|||+++++++|+++|+.| | .|.++.+.+ ++|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 777777765 5799999999999999999 7999999
Q ss_pred CCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhc
Q 005812 284 GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK 363 (676)
Q Consensus 284 ~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (676)
.|+.|.|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999998643210
Q ss_pred ccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHH
Q 005812 364 LTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVK 443 (676)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~ 443 (676)
....++|||+|||..+++++|+
T Consensus 91 ----------------------------------------------------------~~~~~~l~v~nlp~~~t~~~l~ 112 (172)
T 2g4b_A 91 ----------------------------------------------------------LPGAHKLFIGGLPNYLNDDQVK 112 (172)
T ss_dssp ----------------------------------------------------------CTTTTCEEEECCCTTCCHHHHH
T ss_pred ----------------------------------------------------------CCCCCEEEEEcCCCcCCHHHHH
Confidence 0113689999999999999999
Q ss_pred HHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEc
Q 005812 444 QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 507 (676)
Q Consensus 444 ~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a 507 (676)
++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||
T Consensus 113 ~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 113 ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-----GMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT-----TCEETTEECEEEEC
T ss_pred HHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC-----CCEECCeEEEEEeC
Confidence 999999999999999998899999999999999999999999999 99999999999997
No 21
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=3.5e-28 Score=229.43 Aligned_cols=159 Identities=19% Similarity=0.310 Sum_probs=147.1
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcC----C-------CeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHH
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSI----G-------TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACA 187 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~----G-------~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~ 187 (676)
+..++|||+|||+++++++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~---------------~~~~g~afV~f~~~~~A~~ 66 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------------NQDKNFAFLEFRSVDETTQ 66 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE---------------ETTTTEEEEEESSHHHHHH
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe---------------cCCCCEEEEEeCCHHHHHH
Confidence 346899999999999999999999999 6 6777764 3568999999999999999
Q ss_pred HHHHhCCCeecCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecC
Q 005812 188 SVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (676)
Q Consensus 188 A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 267 (676)
|+ .+|+..+.|+.+.+............++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+
T Consensus 67 A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 67 AM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp HG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred HH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 99 89999999999999877666666678999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 268 KRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 268 ~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
.++|.+|++.|||..++|+.|.|.||
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999997
No 22
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=7.9e-28 Score=232.60 Aligned_cols=182 Identities=24% Similarity=0.371 Sum_probs=147.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC----C-------ceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPV----G-------LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 283 (676)
..++|||+|||+++++++|+++|+.| | .|.++.+.. ++|||||+|.+.++|.+|+ .|+|..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45799999999999999999999999 5 566666643 6799999999999999999 7999999
Q ss_pred CCeeEEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhc
Q 005812 284 GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK 363 (676)
Q Consensus 284 ~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (676)
.|+.|.|.++.+.......... ...
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~---------~~~---------------------------------------------- 100 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSEN---------PSV---------------------------------------------- 100 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSC---------SSC----------------------------------------------
T ss_pred cCceEEEeCCCCCCCCCCCcCC---------CcC----------------------------------------------
Confidence 9999999988654321100000 000
Q ss_pred ccccCCCCCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHH
Q 005812 364 LTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVK 443 (676)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~ 443 (676)
..+ .........+.++|||+|||+.+++++|+
T Consensus 101 ------~~~------------------------------------------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 132 (198)
T 2yh0_A 101 ------YVP------------------------------------------GVVSTVVPDSAHKLFIGGLPNYLNDDQVK 132 (198)
T ss_dssp ------CCT------------------------------------------TSSCCCSSCCCCEEEEECCCTTCCHHHHH
T ss_pred ------CCC------------------------------------------CCccCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 000 00000012345899999999999999999
Q ss_pred HHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCch
Q 005812 444 QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 444 ~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k~ 511 (676)
++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|+.|.|.++.++.
T Consensus 133 ~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 133 ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-----GMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT-----TCEETTEECEEEESCCCC
T ss_pred HHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEEEEECCCCC
Confidence 999999999999999998889999999999999999999999999 999999999999998764
No 23
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=9.4e-28 Score=232.16 Aligned_cols=195 Identities=14% Similarity=0.149 Sum_probs=144.1
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 215 QKWKLIIRNIP-FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 215 ~~~~v~V~nLp-~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
+.++|||+||| ..+++++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|+.|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56799999999 89999999999999999999999875 4799999999999999999999999999999999998
Q ss_pred cCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCC
Q 005812 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (676)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (676)
............ .. +........ .......+.....
T Consensus 78 ~~~~~~p~~~~~----------~~------~~~~~~~~~----------~~~~~~r~~~~~~------------------ 113 (205)
T 3tyt_A 78 KQPAIMPGQSYG----------LE------DGSCSYKDF----------SESRNNRFSTPEQ------------------ 113 (205)
T ss_dssp SCSCCCCCSCCB----------CT------TSCBSEEEC----------TTCTTCSCSSHHH------------------
T ss_pred cCCccCCCcccc----------cc------cCCcccccc----------CCCccccccCccc------------------
Confidence 654321000000 00 000000000 0000000000000
Q ss_pred CCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCce-
Q 005812 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV- 452 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v- 452 (676)
........++++|||+|||+.+++++|+++|++||.|
T Consensus 114 ------------------------------------------~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 114 ------------------------------------------AAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp ------------------------------------------HTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred ------------------------------------------ccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 0000012346799999999999999999999999999
Q ss_pred -eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc----EEEEEEc
Q 005812 453 -VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR----QLTVLKA 507 (676)
Q Consensus 453 -~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr----~l~v~~a 507 (676)
.+++++.+. +.++|+|||+|.+.++|.+|+..|| |..|.|+ ++.|.+|
T Consensus 152 ~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~ln-----g~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 152 PTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLN-----HYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHT-----TCEECCSSSSSCEECEEE
T ss_pred eEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhC-----CCCccCCCCCcceEEEec
Confidence 899888764 4567999999999999999999999 9999987 6777775
No 24
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.1e-28 Score=233.74 Aligned_cols=166 Identities=22% Similarity=0.334 Sum_probs=145.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||.++++++|+++|..||.+.. .++.+..++.++|||||+|.+.++|.+|++ |+|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4567899999999999999999999999998776 344455678899999999999999999995 99999999999999
Q ss_pred EecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCC
Q 005812 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (676)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 371 (676)
++.++...
T Consensus 87 ~~~~~~~~------------------------------------------------------------------------ 94 (175)
T 1fje_B 87 KPKGRDSK------------------------------------------------------------------------ 94 (175)
T ss_dssp CCCCSSCS------------------------------------------------------------------------
T ss_pred cCCCcccc------------------------------------------------------------------------
Confidence 98654210
Q ss_pred CCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCc
Q 005812 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~ 451 (676)
.....++|||+|||+.+++++|+++|+.||.
T Consensus 95 -------------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~ 125 (175)
T 1fje_B 95 -------------------------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALE 125 (175)
T ss_dssp -------------------------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSE
T ss_pred -------------------------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCe
Confidence 0112479999999999999999999999998
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEEccCc
Q 005812 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (676)
Q Consensus 452 v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~a~~k 510 (676)
|..+ ..++.++|||||+|.+.++|.+|+..|| |..|+|+.|.|.||.+|
T Consensus 126 v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 126 IRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ-----GAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT-----EEEETTEEEEEEECSSC
T ss_pred EEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEecCCC
Confidence 8765 4578899999999999999999999999 99999999999999876
No 25
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=1.1e-27 Score=226.61 Aligned_cols=167 Identities=21% Similarity=0.271 Sum_probs=145.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec---C
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTK--RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK---G 499 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~--~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~---g 499 (676)
.++|||+|||+++++++|+++|++||.|.+|+++++..++ .++|||||+|.+.++|.+|+..|+ +..+. +
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----~~~~~~~~~ 77 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH-----NMKVLPGMH 77 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT-----TTCCCTTCS
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc-----CcEEccCCc
Confidence 4799999999999999999999999999999999998776 899999999999999999999999 77765 6
Q ss_pred cEEEEEEccCchhhhhHhhhhhcccccccCcccccccCcccCCCCCCCCCChhHHHHHHHHHHHHhhcCCCCCccccCCe
Q 005812 500 RQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTR 579 (676)
Q Consensus 500 r~l~v~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 579 (676)
+.+.+.++.+.... ....++
T Consensus 78 ~~~~~~~~~~~~~~------------------------------------------------------------~~~~~~ 97 (175)
T 3nmr_A 78 HPIQMKPADSEKNN------------------------------------------------------------AVEDRK 97 (175)
T ss_dssp SCCEEEECGGGCCS------------------------------------------------------------CGGGSE
T ss_pred cceEEccccccccc------------------------------------------------------------cCCCCe
Confidence 78888876543210 013368
Q ss_pred EEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCCC
Q 005812 580 LVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPS 659 (676)
Q Consensus 580 l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~~ 659 (676)
|||+|||..+|+++|+++|+ .||.|.+|+++++.. +.++|+|||+|.++++|.+|++.|||..+
T Consensus 98 l~v~nl~~~~t~~~l~~~F~---------~~G~i~~v~~~~~~~-------g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 98 LFIGMISKKCTENDIRVMFS---------SFGQIEECRILRGPD-------GLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHG---------GGSCEEEEEEEECTT-------SCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EEEcCCCCcCCHHHHHHHHH---------hCCCEEEEEEEECCC-------CCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 99999999999999999999 699999999998842 47899999999999999999999999876
Q ss_pred CCCcccCcccccc
Q 005812 660 KLFYHHCFDAADA 672 (676)
Q Consensus 660 ~~~~~~~~~~~~~ 672 (676)
..|..+.+.|.+|
T Consensus 162 ~~g~~~~l~V~~a 174 (175)
T 3nmr_A 162 MEGCSSPMVVKFA 174 (175)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCCCCeEEEec
Confidence 6555688888877
No 26
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2.2e-26 Score=235.44 Aligned_cols=254 Identities=18% Similarity=0.250 Sum_probs=153.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 287 (676)
.....++|||+|||+++++++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567899999999999999976 8999999999999986 6779999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhc--cc
Q 005812 288 IAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK--LT 365 (676)
Q Consensus 288 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 365 (676)
|.|.|+........................+.... ........... ..
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~ 131 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQ------------------------------ETPATKKAVQGGGAT 131 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhcccc------------------------------chhhhhhhccCcCCc
Confidence 99999966543211111000000000000000000 00000000000 00
Q ss_pred ----ccCCCCCCCCCccccc------cCCCCCCCchh-hcccccccc-ccccCCC--CCCCC--CCCcccCCCCCCCeEE
Q 005812 366 ----STTGSLPSLSDDSALV------KGNKEQDSDKT-VNESAKVSD-VSKLNSS--KSKPK--SLKQTEGEDELQNTIF 429 (676)
Q Consensus 366 ----~~~g~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~--~~~~~~~~~~~~~~l~ 429 (676)
...+..++........ .|......... ......... ..+.... ...+. ..........++++||
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (282)
T 3pgw_A 132 PVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILF 211 (282)
T ss_pred ccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEE
Confidence 0000000000000000 00000000000 000000000 0000000 00000 0001113445678999
Q ss_pred EcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec-CcEEEEEEcc
Q 005812 430 ICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKAL 508 (676)
Q Consensus 430 V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~-gr~l~v~~a~ 508 (676)
|+|||..+++++|+++|++||.|.+|+++.+. +|||||+|.+.++|.+|+..|| |..|+ |+.|.|.|++
T Consensus 212 v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 212 LTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQ-----GFKITQNNAMKISFAK 281 (282)
T ss_pred EeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcC-----CcEeCCCCEEEEEEec
Confidence 99999999999999999999999999988552 6899999999999999999999 99999 9999999985
No 27
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=4.7e-27 Score=227.12 Aligned_cols=163 Identities=19% Similarity=0.302 Sum_probs=144.5
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcC----C-------CeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHH
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSI----G-------TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACA 187 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~----G-------~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~ 187 (676)
+..++|||+|||+++++++|+++|+.| | .|..+.+ ++++|||||+|.+.++|.+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---------------~~~~g~afV~F~~~~~A~~ 66 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------------NQDKNFAFLEFRSVDETTQ 66 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---------------ETTTTEEEEEESCSHHHHH
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---------------cCCCCEEEEEeCCHHHHHH
Confidence 346899999999999999999999999 4 5555553 4678999999999999999
Q ss_pred HHHHhCCCeecCeEEEEecCCCCC--------------------CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEE
Q 005812 188 SVALLHQKEIKGGTVWARQLGGEG--------------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247 (676)
Q Consensus 188 A~~~l~~~~~~~~~i~v~~~~~~~--------------------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~ 247 (676)
|+ .|||..+.|+.|.+....... .....++|||+|||..+++++|+++|++||.|..|.
T Consensus 67 Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 145 (198)
T 2yh0_A 67 AM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN 145 (198)
T ss_dssp HG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEE
T ss_pred HH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEE
Confidence 99 899999999999987543211 124568999999999999999999999999999999
Q ss_pred EcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 005812 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 248 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~ 297 (676)
++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+.++.
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99998899999999999999999999999999999999999999998764
No 28
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=6.3e-27 Score=231.54 Aligned_cols=196 Identities=19% Similarity=0.205 Sum_probs=149.3
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 212 SKTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~-~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.....++|||+|||+ ++++++|+++|+.||.|.+|.+++++ +|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999999863 789999999999999999999999999999999
Q ss_pred EEecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCC
Q 005812 291 DWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 370 (676)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 370 (676)
.|+.+............. . .....
T Consensus 105 ~~a~~~~~~~~~~~~~~~--------~----------~~~~~-------------------------------------- 128 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQ--------G----------LTKDY-------------------------------------- 128 (229)
T ss_dssp ECCSCCCCCCCCSSSSTT--------T----------TEEEC--------------------------------------
T ss_pred EEecCccccCcccccccc--------c----------ccccc--------------------------------------
Confidence 999765432211000000 0 00000
Q ss_pred CCCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCC
Q 005812 371 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 450 (676)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G 450 (676)
......+...+..........++++|||+|||+.+++++|+++|++||
T Consensus 129 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 129 --------------------------------GNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp --------------------------------TTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred --------------------------------ccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 000000000000000011233468999999999999999999999999
Q ss_pred -ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec-CcEEEEEEccCc
Q 005812 451 -EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKALDK 510 (676)
Q Consensus 451 -~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~-gr~l~v~~a~~k 510 (676)
.|..|+++.+ .+|||||+|.+.++|.+|+..|| |..++ |+.|.|.|+.++
T Consensus 177 ~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 177 GVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH-----NHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHT-----TCBSSSSCBCEEEECSSC
T ss_pred CCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHC-----CCccCCCCeEEEEEecCC
Confidence 9999988653 37899999999999999999999 99999 999999998764
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=5.3e-27 Score=226.86 Aligned_cols=193 Identities=20% Similarity=0.218 Sum_probs=147.2
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 215 QKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 215 ~~~~v~V~nLp~-~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
..++|||+|||+ .+++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 457999999999 99999999999999999999999863 789999999999999999999999999999999999
Q ss_pred cCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCCCC
Q 005812 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (676)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (676)
.+............. ...... +.
T Consensus 77 ~~~~~~~~~~~~~~~------------------~~~~~~------------------------------------~~--- 99 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQ------------------GLTKDY------------------------------------GN--- 99 (198)
T ss_dssp CCCSCCCSSSSSSSS------------------SCEEES------------------------------------SC---
T ss_pred cCCCcCCCCcCCccc------------------cccccc------------------------------------cC---
Confidence 765422111000000 000000 00
Q ss_pred CCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCC-ce
Q 005812 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG-EV 452 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G-~v 452 (676)
....+..++..........++++|||+|||..+++++|+++|+.|| .|
T Consensus 100 -------------------------------~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v 148 (198)
T 1qm9_A 100 -------------------------------SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 148 (198)
T ss_dssp -------------------------------CCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCC
T ss_pred -------------------------------CchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCc
Confidence 0000000000000011223468999999999999999999999999 99
Q ss_pred eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec-CcEEEEEEccCc
Q 005812 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKALDK 510 (676)
Q Consensus 453 ~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~-gr~l~v~~a~~k 510 (676)
..++++.+ .+|+|||+|.+.++|.+|+..|| |..++ |++|.|.|+.++
T Consensus 149 ~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 149 KGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH-----NHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CEEEESST-----TSSCEEEECSSHHHHHHHHHHHT-----SSCCSSCCSCCEEEECCC
T ss_pred eEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhc-----CCccCCCCeEEEEeeccc
Confidence 99988654 27899999999999999999999 99999 999999998764
No 30
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=2.1e-27 Score=224.84 Aligned_cols=162 Identities=17% Similarity=0.270 Sum_probs=141.8
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
...++|||+|||.++++++|+++|..||.|..+ ++.+. ..|+++|||||+|.+.++|.+|+ .||+..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~---------~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 79 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDV---------RTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF 79 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEE---------EEETTTTEEEEEESSHHHHHHHH-HGGGEEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEEC---------CCCccccEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 567899999999999999999999999987662 22222 34889999999999999999999 59999999
Q ss_pred CeEEEEecCCCC--CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHH
Q 005812 199 GGTVWARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276 (676)
Q Consensus 199 ~~~i~v~~~~~~--~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 276 (676)
|+.|.+...... ......++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+.
T Consensus 80 g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 80 GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp TEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred CeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 999999765432 233456899999999999999999999999988766 3478899999999999999999999
Q ss_pred HhCCceeCCeeEEEEEecCC
Q 005812 277 KFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 277 ~l~~~~~~g~~i~v~~a~~~ 296 (676)
.|||..|.|+.|.|.|+.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999999875
No 31
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.7e-26 Score=233.08 Aligned_cols=160 Identities=28% Similarity=0.441 Sum_probs=146.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+++|+++|+++|+.||.|..|.+.+ ++|||||+|.+.++|..|+..|+|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345668999999999999999999999999999999975 46999999999999999999999999999999999
Q ss_pred EecCCCCCCcCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCccccCCCCCCCchhHHHHHHHHhhcccccCCCC
Q 005812 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (676)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 371 (676)
|+.+
T Consensus 92 ~a~~---------------------------------------------------------------------------- 95 (261)
T 3sde_A 92 FATH---------------------------------------------------------------------------- 95 (261)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred eccc----------------------------------------------------------------------------
Confidence 9743
Q ss_pred CCCCCccccccCCCCCCCchhhccccccccccccCCCCCCCCCCCcccCCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCc
Q 005812 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~ 451 (676)
+++|||+|||+.+++++|+++|+.||.
T Consensus 96 -----------------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 96 -----------------------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp -----------------------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred -----------------------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCC
Confidence 258999999999999999999999999
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec---CcEEEEEEccCch
Q 005812 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK---GRQLTVLKALDKK 511 (676)
Q Consensus 452 v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~---gr~l~v~~a~~k~ 511 (676)
|..|.++.+ .+|.++|||||+|.+.++|.+|+..||. +..+. ||+|.|.++.+..
T Consensus 123 i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~----~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 123 VEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGD----GAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHH----SCEESSSSCCBCEEEECCCEE
T ss_pred eEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcC----CeEEecCCCceEEEeeccccC
Confidence 999999999 5899999999999999999999999951 55555 9999999998764
No 32
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=2.2e-26 Score=222.53 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=136.5
Q ss_pred cCcEEEEcCCC-ccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 120 VARTVIIGGLL-NADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 120 ~~~~l~V~nLp-~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
.+++|||+||| ..+++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|..|+..|||..+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--------------~~g~afV~f~~~~~A~~Ai~~lng~~~~ 68 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--------------KPGAAMVEMADGYAVDRAITHLNNNFMF 68 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--------------STTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--------------CCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45789999999 89999999999999999999998742 3799999999999999999999999999
Q ss_pred CeEEEEecCCCCC-------------------------------------CCCCCcEEEEcCCCCCCCHHHHHHhhccCC
Q 005812 199 GGTVWARQLGGEG-------------------------------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVG 241 (676)
Q Consensus 199 ~~~i~v~~~~~~~-------------------------------------~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G 241 (676)
|+.|.|....... ...+.++|||+|||+.+++++|+++|++||
T Consensus 69 g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G 148 (205)
T 3tyt_A 69 GQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG 148 (205)
T ss_dssp TEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT
T ss_pred CceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC
Confidence 9999986432100 012346899999999999999999999999
Q ss_pred ce--EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe----eEEEEEe
Q 005812 242 LV--WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR----PIAVDWA 293 (676)
Q Consensus 242 ~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~----~i~v~~a 293 (676)
.| .+++++.+. +.++|||||+|.+.++|.+|+..|||..|.|. ++.|.++
T Consensus 149 ~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 149 VKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99 899998874 45679999999999999999999999999775 5777664
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.2e-25 Score=222.42 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=140.9
Q ss_pred ccCcEEEEcCCCc-cccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 005812 119 RVARTVIIGGLLN-ADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (676)
Q Consensus 119 ~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (676)
..+++|||+|||+ ++++++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|+..||+..+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--------------~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------------KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--------------SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--------------CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 4578999999999 99999999999999999999987432 78999999999999999999999999
Q ss_pred cCeEEEEecCCCC-----------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHhhccCC-
Q 005812 198 KGGTVWARQLGGE-----------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG- 241 (676)
Q Consensus 198 ~~~~i~v~~~~~~-----------------------------------~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G- 241 (676)
.|+.|.|...... ....+.++|||+|||..+++++|+++|+.||
T Consensus 98 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 98 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 9999998643211 0012368999999999999999999999999
Q ss_pred ceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEEecCC
Q 005812 242 LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPK 296 (676)
Q Consensus 242 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~i~v~~a~~~ 296 (676)
.|..|.+..+ .+|||||+|.+.++|.+|+..|+|..+. |+.|.|.|+.++
T Consensus 178 ~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 178 VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999653 4689999999999999999999999999 999999999764
No 34
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=1.6e-25 Score=229.08 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=140.9
Q ss_pred ccCcEEEEcCCCccccHHHHH----HHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCC
Q 005812 119 RVARTVIIGGLLNADMAEEVH----RLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ 194 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~ 194 (676)
...++|||+|||.++++++|+ ++|+.||.|.+|+++ ++|+++|||||+|.+.++|.+|+..|||
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~------------~~~~~~g~afV~f~~~~~a~~A~~~l~g 74 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVS------------RSLKMRGQAFVIFKEVSSATNALRSMQG 74 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc------------CCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 457899999999999999966 899999999999966 4588999999999999999999999999
Q ss_pred CeecCeEEEEecCCCC----------------------------------------------------------------
Q 005812 195 KEIKGGTVWARQLGGE---------------------------------------------------------------- 210 (676)
Q Consensus 195 ~~~~~~~i~v~~~~~~---------------------------------------------------------------- 210 (676)
..+.|+.|.|......
T Consensus 75 ~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (282)
T 3pgw_A 75 FPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIM 154 (282)
T ss_pred CeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccc
Confidence 9999999987532110
Q ss_pred -----------------------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCce
Q 005812 211 -----------------------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV 243 (676)
Q Consensus 211 -----------------------------------------------~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i 243 (676)
......++|||+|||..+++++|+++|+.||.|
T Consensus 155 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i 234 (282)
T 3pgw_A 155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGF 234 (282)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCe
Confidence 011245789999999999999999999999999
Q ss_pred EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEEec
Q 005812 244 WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAV 294 (676)
Q Consensus 244 ~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~i~v~~a~ 294 (676)
.+|+++.+ .+|||||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 235 ~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 235 KEVRLVPG-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEEecC-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999875 3589999999999999999999999999 9999999985
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=8.5e-26 Score=218.35 Aligned_cols=157 Identities=16% Similarity=0.233 Sum_probs=139.4
Q ss_pred CcEEEEcCCCc-cccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeecC
Q 005812 121 ARTVIIGGLLN-ADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (676)
Q Consensus 121 ~~~l~V~nLp~-~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~~ 199 (676)
+++|||+|||+ ++++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|.+|+..|||..+.|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--------------~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------------KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--------------SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--------------CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 57899999999 99999999999999999999977432 7899999999999999999999999999
Q ss_pred eEEEEecCCCC-----------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHhhccCC-ce
Q 005812 200 GTVWARQLGGE-----------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG-LV 243 (676)
Q Consensus 200 ~~i~v~~~~~~-----------------------------------~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G-~i 243 (676)
+.|.+...... ....+.++|||+|||..+++++|+++|+.|| .|
T Consensus 69 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v 148 (198)
T 1qm9_A 69 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 148 (198)
T ss_dssp CCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCC
T ss_pred eEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCc
Confidence 99988533211 0113478999999999999999999999999 99
Q ss_pred EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEEecCC
Q 005812 244 WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPK 296 (676)
Q Consensus 244 ~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~i~v~~a~~~ 296 (676)
..|.+..+ .+|||||+|.+.++|.+|+..|||..+. |+.|+|.|+.++
T Consensus 149 ~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 149 KGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999764 4789999999999999999999999999 999999999764
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=2.4e-25 Score=224.72 Aligned_cols=157 Identities=20% Similarity=0.206 Sum_probs=142.7
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
...++|||+|||+++++++|+++|+.||.|..|.+. +++|||||+|.+.++|.+|+..|||..+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---------------~~kg~afV~f~~~~~A~~A~~~l~g~~i~ 84 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---------------RDRGFGFIRLESRTLAEIAKAELDGTILK 84 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---------------TTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---------------CCCcEEEEEECCHHHHHHHHHHcCCcEEC
Confidence 456799999999999999999999999999999964 34799999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 005812 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (676)
Q Consensus 199 ~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 278 (676)
|+.|.|.... ...+|||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|
T Consensus 85 g~~l~v~~a~------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 85 SRPLRIRFAT------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp TEECEEEECC------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CceeEeeecc------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 9999997543 4679999999999999999999999999999999998 58999999999999999999999999
Q ss_pred C-CceeC---CeeEEEEEecCCC
Q 005812 279 N-GQKFG---KRPIAVDWAVPKN 297 (676)
Q Consensus 279 ~-~~~~~---g~~i~v~~a~~~~ 297 (676)
+ +..+. +++|.|.++.+..
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEE
T ss_pred cCCeEEecCCCceEEEeeccccC
Confidence 5 44444 9999999987653
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=5.8e-20 Score=170.39 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=78.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|+++|+.||.|..|+|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|++|.|
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v 144 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-----GAVLDGRELRV 144 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST-----TEESSSSEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEE
Confidence 5799999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccCch
Q 005812 505 LKALDKK 511 (676)
Q Consensus 505 ~~a~~k~ 511 (676)
.++.++.
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9998753
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=4.2e-20 Score=171.29 Aligned_cols=128 Identities=23% Similarity=0.280 Sum_probs=107.8
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEec-------------CCCCCCCCCCcEEEEcCCCCCCCHHHHHHh
Q 005812 170 CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQ-------------LGGEGSKTQKWKLIIRNIPFKAKVNEIKDM 236 (676)
Q Consensus 170 ~~~g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~~-------------~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~ 236 (676)
+++|||||+|.+.++|++|+..+++....+....+.. ..........++|||+|||+.+++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 6899999999999999999998875432222222110 011223345789999999999999999999
Q ss_pred hccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 005812 237 FSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 237 F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~ 297 (676)
|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+.++.
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999998899999999999999999999999999999999999999998764
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=7.7e-20 Score=159.51 Aligned_cols=80 Identities=36% Similarity=0.561 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
..+|||+|||+.+++++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|.+|++.|+ +..|+|+.|.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~-----~~~~~g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN-----GMLLNDRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcC-----CCEECCEEEEE
Confidence 3689999999999999999999999999999999985 4579999999999999999999999 99999999999
Q ss_pred EEccCch
Q 005812 505 LKALDKK 511 (676)
Q Consensus 505 ~~a~~k~ 511 (676)
.++.++.
T Consensus 78 ~~a~~~~ 84 (115)
T 4f25_A 78 GRFKSRK 84 (115)
T ss_dssp EESSCCC
T ss_pred EECCCcc
Confidence 9988754
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.9e-19 Score=157.03 Aligned_cols=81 Identities=26% Similarity=0.400 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
...+|||+|||+++++++|+++|+.||.|.+|+|+++. +.++|||||+|.+.++|++|++.|+|..|.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999985 4589999999999999999999999999999999999987
Q ss_pred CCC
Q 005812 295 PKN 297 (676)
Q Consensus 295 ~~~ 297 (676)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=2.6e-19 Score=164.36 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
+.++|||+|||+.+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+..|| |..|+|++|.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 141 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELD-----GRTLCGCRVR 141 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHS-----SSCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcC-----CCEECCeEEE
Confidence 4589999999999999999999999999999998765 58999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 005812 504 VLKALDK 510 (676)
Q Consensus 504 v~~a~~k 510 (676)
|.++.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999875
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=4.4e-19 Score=162.81 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=109.7
Q ss_pred CCccceEEEEeCCHHHHHHHHHHh-CCCeecCeEEEEecCCC----------------CCCCCCCcEEEEcCCCCCCCHH
Q 005812 169 GCKMDASAVLYTTVKSACASVALL-HQKEIKGGTVWARQLGG----------------EGSKTQKWKLIIRNIPFKAKVN 231 (676)
Q Consensus 169 g~~~g~afV~F~~~~~A~~A~~~l-~~~~~~~~~i~v~~~~~----------------~~~~~~~~~v~V~nLp~~~~e~ 231 (676)
.+-+|+++|+|.+.++|++|+..+ |+..+.| .+.+..... .......++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 356899999999999999999999 9999999 887764332 2234567999999999999999
Q ss_pred HHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 005812 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 232 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~ 297 (676)
+|+++|+.||.|.+|.++.+ ++|||||+|.+.++|..|+..|||..|.|+.|+|.|+.++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999986 68999999999999999999999999999999999997753
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=148.48 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=78.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
.+++|||+|||+++|+++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|| |..|+|++|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-----g~~~~gr~l~ 92 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN-----GLRLQSKTIK 92 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC-----CCEECCEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccC
Q 005812 504 VLKALD 509 (676)
Q Consensus 504 v~~a~~ 509 (676)
|.||+|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999875
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=146.62 Aligned_cols=83 Identities=30% Similarity=0.526 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||+++|+++|+++|++||.|.+|.|++++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 005812 293 AVP 295 (676)
Q Consensus 293 a~~ 295 (676)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=143.86 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=80.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
+.++|||+|||+.+++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|.+|++.|| |..|+|+.|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln-----g~~~~gr~i~ 79 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH-----LTSVMGNIIH 79 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC-----CCEECCeEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCchhhh
Q 005812 504 VLKALDKKLAH 514 (676)
Q Consensus 504 v~~a~~k~~~~ 514 (676)
|.++..+....
T Consensus 80 V~~a~~~~~~~ 90 (110)
T 3s8s_A 80 AQLDIKGQQRM 90 (110)
T ss_dssp EEECSTTHHHH
T ss_pred EEECCCCcHHH
Confidence 99997765443
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=143.86 Aligned_cols=82 Identities=15% Similarity=0.321 Sum_probs=76.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
++|||+|||+++|+++|+++|++|| .|.+|+|++++.++.++|||||+|.+.++|.+|++.++ ++..|+||+|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~----~~~~~~gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ----HSLNILGQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT----TEEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC----CCeEECCEEEEE
Confidence 6899999999999999999999999 89999999999999999999999999999999999874 067899999999
Q ss_pred EEccCch
Q 005812 505 LKALDKK 511 (676)
Q Consensus 505 ~~a~~k~ 511 (676)
.+|.+++
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998764
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=7.7e-18 Score=140.56 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=74.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCc--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCe----eecC
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGE--VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI----FLKG 499 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~--v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~----~l~g 499 (676)
.+|||+|||+.+|+++|+++|++||. +..|++++|+.++.++|||||+|.+.++|.+|++.|| +. .|+|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ln-----g~~~~~~i~G 84 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQ-----SLHPPLKIDG 84 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHH-----SSSSCEEETT
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhc-----CCCCCceECC
Confidence 69999999999999999999999995 6789999999999999999999999999999999999 64 6999
Q ss_pred cEEEEEEccC
Q 005812 500 RQLTVLKALD 509 (676)
Q Consensus 500 r~l~v~~a~~ 509 (676)
|+|.|.||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999875
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=6.4e-18 Score=140.50 Aligned_cols=82 Identities=23% Similarity=0.405 Sum_probs=76.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC-CceeCCeeEEEEEe
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN-GQKFGKRPIAVDWA 293 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-~~~~~g~~i~v~~a 293 (676)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.++ +..+.|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999999874 56799999999999
Q ss_pred cCCC
Q 005812 294 VPKN 297 (676)
Q Consensus 294 ~~~~ 297 (676)
.|+.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8765
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=139.99 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
.+.++|||+|||+.+++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 005812 294 VPK 296 (676)
Q Consensus 294 ~~~ 296 (676)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=134.80 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..|| +..++|+.|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-----GQWLGGRQIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCeEEE
Confidence 45799999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 005812 504 VLKALDK 510 (676)
Q Consensus 504 v~~a~~k 510 (676)
|.++.++
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999875
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=137.65 Aligned_cols=84 Identities=29% Similarity=0.422 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCc--eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc----eeCC
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL--VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ----KFGK 285 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~----~~~g 285 (676)
....-.+|||+|||+.+|+++|+++|++||. |.+|++++++.+|+++|||||+|.+.++|.+|++.|||. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445679999999999999999999999995 678999999999999999999999999999999999997 4899
Q ss_pred eeEEEEEecC
Q 005812 286 RPIAVDWAVP 295 (676)
Q Consensus 286 ~~i~v~~a~~ 295 (676)
++|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 52
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=9.3e-18 Score=150.49 Aligned_cols=123 Identities=24% Similarity=0.314 Sum_probs=83.0
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCeecCeEEEEecCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCC
Q 005812 174 ASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD 253 (676)
Q Consensus 174 ~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~ 253 (676)
++|++|.+...+..|+..+++....|+.... ....+......++|||+|||+.+++++|+++|+.||.|..|.|+.++.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~-~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMS-YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp -----------------------------CC-SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCC-cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 5788888999999999998887666553221 222233445678999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 005812 254 TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 254 ~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~ 297 (676)
++.++|||||+|.+.++|++|+..|+|..|.|+.|.|.|+.+..
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999998754
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=6.5e-17 Score=132.11 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=77.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
.+|||+|||+.+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++|.|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-----g~~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-----GQDLNGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc-----CCeeCCcEEEEE
Confidence 589999999999999999999999999999999998899999999999999999999999999 999999999999
Q ss_pred EccCch
Q 005812 506 KALDKK 511 (676)
Q Consensus 506 ~a~~k~ 511 (676)
++.+++
T Consensus 77 ~a~~~~ 82 (83)
T 3md1_A 77 WAAKLE 82 (83)
T ss_dssp ECCCCC
T ss_pred ecCcCC
Confidence 998763
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=9.7e-17 Score=132.37 Aligned_cols=83 Identities=33% Similarity=0.575 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
.+.++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCC
Q 005812 294 VPK 296 (676)
Q Consensus 294 ~~~ 296 (676)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 55
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=1.3e-16 Score=130.25 Aligned_cols=81 Identities=23% Similarity=0.535 Sum_probs=77.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
.+|||+|||..+++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|++|+..|||..+.|+.|+|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999875
Q ss_pred C
Q 005812 297 N 297 (676)
Q Consensus 297 ~ 297 (676)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=133.39 Aligned_cols=84 Identities=21% Similarity=0.405 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 85 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-----GMELDGR 85 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34456899999999999999999999999999999999998889999999999999999999999999 9999999
Q ss_pred EEEEEEccC
Q 005812 501 QLTVLKALD 509 (676)
Q Consensus 501 ~l~v~~a~~ 509 (676)
+|.|.++.+
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999864
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=134.09 Aligned_cols=87 Identities=26% Similarity=0.395 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
++.++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9988754
No 58
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=1.3e-16 Score=134.23 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=80.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
+++|||+|||..+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.|| |..|+|+.|.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN-----GYQLGSRFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEE
Confidence 5799999999999999999999999999999999998889999999999999999999999999 99999999999
Q ss_pred EEccCchhhh
Q 005812 505 LKALDKKLAH 514 (676)
Q Consensus 505 ~~a~~k~~~~ 514 (676)
.++.++....
T Consensus 77 ~~a~~~~~~~ 86 (96)
T 2x1f_A 77 GYSSNSDISG 86 (96)
T ss_dssp EECSCSSGGG
T ss_pred EEcCCCCCCC
Confidence 9999876543
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=134.35 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|+.||.|..|.++.+. ++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 86 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD-----GMTIKEN 86 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT-----TEESSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34456899999999999999999999999999999999987 89999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
+|.|.++.++.
T Consensus 87 ~l~v~~a~~~~ 97 (100)
T 2do4_A 87 IIKVAISNSGP 97 (100)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=1.7e-16 Score=138.42 Aligned_cols=86 Identities=27% Similarity=0.411 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 95 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN-----GFQIGMK 95 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 44456899999999999999999999999999999999998889999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999998764
No 61
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=1e-16 Score=131.60 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.|| |..|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 346899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEcc
Q 005812 503 TVLKAL 508 (676)
Q Consensus 503 ~v~~a~ 508 (676)
.|.+|+
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999974
No 62
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=134.89 Aligned_cols=84 Identities=31% Similarity=0.497 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+.++|||+|||+.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|+..|| +..|+|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD-----GQVFQGRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT-----TEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 346899999999999999999999999999999999998889999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 81 ~V~~a~~~~ 89 (99)
T 1whw_A 81 HVLPSTIKK 89 (99)
T ss_dssp EEEECCCCS
T ss_pred EEEEcCCCc
Confidence 999998865
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=2e-17 Score=140.21 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=79.6
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee
Q 005812 424 LQNTIFICNLPF------DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (676)
Q Consensus 424 ~~~~l~V~nLp~------~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l 497 (676)
.+++|||+|||+ .+++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+|+..|| |..|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-----g~~~ 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH-----GKRL 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCBS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC-----Cccc
Confidence 358999999999 99999999999999999999999999899999999999999999999999999 9999
Q ss_pred cC-cEEEEEEccCchh
Q 005812 498 KG-RQLTVLKALDKKL 512 (676)
Q Consensus 498 ~g-r~l~v~~a~~k~~ 512 (676)
.| |.|.|.++.+++.
T Consensus 80 ~g~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 80 DLKHRLFLYTMKDVER 95 (100)
T ss_dssp SSSCBCEEEESHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 99 9999999987653
No 64
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-16 Score=133.71 Aligned_cols=87 Identities=26% Similarity=0.565 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45667999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 65
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.8e-16 Score=130.11 Aligned_cols=82 Identities=29% Similarity=0.430 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
..+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 005812 293 AV 294 (676)
Q Consensus 293 a~ 294 (676)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 66
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=3.5e-16 Score=136.37 Aligned_cols=86 Identities=27% Similarity=0.407 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 85 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-----GQWLGGR 85 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-----TCEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 86 ~l~V~~a~~~~ 96 (115)
T 2dgo_A 86 QIRTNWATRKP 96 (115)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 99999998764
No 67
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=134.66 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 85 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS-----GFGYDHL 85 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT-----TCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC-----CCeeCCc
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 68
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=135.82 Aligned_cols=86 Identities=26% Similarity=0.297 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 85 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD-----MIKLYGK 85 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS-----SCBCSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC-----CCeECCe
Confidence 34456899999999999999999999999999999999998889999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 86 ~l~v~~a~~~~ 96 (105)
T 1x5u_A 86 PIRVNKASAHN 96 (105)
T ss_dssp BCEEEETTTTS
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 69
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=136.19 Aligned_cols=86 Identities=24% Similarity=0.453 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|+ |..|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~-----g~~i~g~ 96 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN-----GFELAGR 96 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT-----TCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 97 ~l~V~~a~~k~ 107 (108)
T 2jrs_A 97 PMKVGHVTERT 107 (108)
T ss_dssp CCEEECSCSSC
T ss_pred EEEEEEcccCC
Confidence 99999998763
No 70
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=2.6e-16 Score=132.41 Aligned_cols=83 Identities=29% Similarity=0.520 Sum_probs=79.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.++|||+|||..+++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.|+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred CCC
Q 005812 296 KNI 298 (676)
Q Consensus 296 ~~~ 298 (676)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 71
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=2.1e-17 Score=148.19 Aligned_cols=83 Identities=24% Similarity=0.373 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| +..|+|++|.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~-----g~~i~g~~l~ 120 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-----GAVLDGRELR 120 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT-----TCCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEE
Confidence 35799999999999999999999999999999999998889999999999999999999999999 9999999999
Q ss_pred EEEccCch
Q 005812 504 VLKALDKK 511 (676)
Q Consensus 504 v~~a~~k~ 511 (676)
|.++.++.
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998653
No 72
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=133.13 Aligned_cols=83 Identities=25% Similarity=0.459 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
++++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|| +..|+|++|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN-----GFELAGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT-----TCCSSSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC-----CCeeCCcEEE
Confidence 35899999999999999999999999999999999998889999999999999999999999999 9999999999
Q ss_pred EEEccCch
Q 005812 504 VLKALDKK 511 (676)
Q Consensus 504 v~~a~~k~ 511 (676)
|.++.++.
T Consensus 79 V~~a~~~~ 86 (95)
T 2dnz_A 79 VGHVTERL 86 (95)
T ss_dssp EEESSCCC
T ss_pred EEEccccc
Confidence 99998764
No 73
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=131.51 Aligned_cols=82 Identities=28% Similarity=0.482 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|| +..|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 87 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN-----NKQLFGRV 87 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT-----TEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC-----CCeeCCcE
Confidence 3456899999999999999999999999999999999998889999999999999999999999999 99999999
Q ss_pred EEEEEcc
Q 005812 502 LTVLKAL 508 (676)
Q Consensus 502 l~v~~a~ 508 (676)
|.|.+|+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999974
No 74
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=136.26 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..++++|||+|||+.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 94 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-----GQDLMGQP 94 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT-----TCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc-----CCEECCcE
Confidence 3456899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 95 l~V~~a~~~~ 104 (106)
T 1p27_B 95 ISVDWCFVRG 104 (106)
T ss_dssp CEEEESEESS
T ss_pred EEEEeecCCC
Confidence 9999987653
No 75
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.2e-16 Score=131.34 Aligned_cols=86 Identities=20% Similarity=0.420 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++ |++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999 99999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987654
No 76
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=2.2e-16 Score=147.10 Aligned_cols=122 Identities=24% Similarity=0.397 Sum_probs=80.6
Q ss_pred EEeCCHHHHHHHHHHhCCCeec--CeEEEEec--------------------CCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q 005812 177 VLYTTVKSACASVALLHQKEIK--GGTVWARQ--------------------LGGEGSKTQKWKLIIRNIPFKAKVNEIK 234 (676)
Q Consensus 177 V~F~~~~~A~~A~~~l~~~~~~--~~~i~v~~--------------------~~~~~~~~~~~~v~V~nLp~~~~e~~l~ 234 (676)
.+|.+.++|..|+..+++.... |+...... ...+......++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6789999999999988876554 33222210 0112234456899999999999999999
Q ss_pred HhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCC
Q 005812 235 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNI 298 (676)
Q Consensus 235 ~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~ 298 (676)
.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.++..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999988999999999999999999999999999999999999999977643
No 77
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=131.24 Aligned_cols=85 Identities=25% Similarity=0.484 Sum_probs=80.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
...++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 005812 294 VPKNI 298 (676)
Q Consensus 294 ~~~~~ 298 (676)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87653
No 78
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=4.9e-17 Score=135.03 Aligned_cols=81 Identities=12% Similarity=0.206 Sum_probs=72.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCC--ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
.+|||+|||+.+++++|+++|++|| .|.+++++.++.+|.++|||||+|.+.++|.+|++.|| |..|+|+.|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-----KRELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG-----GSCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC-----CCeeCCEEEE
Confidence 4899999999999999999999999 99999999999899999999999999999999999999 9999999999
Q ss_pred EEEccCch
Q 005812 504 VLKALDKK 511 (676)
Q Consensus 504 v~~a~~k~ 511 (676)
|.++.++.
T Consensus 77 V~~~~~~~ 84 (90)
T 3p5t_L 77 VTPSNKLE 84 (90)
T ss_dssp ECCC----
T ss_pred EEECCCCc
Confidence 99988764
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-16 Score=131.86 Aligned_cols=85 Identities=25% Similarity=0.439 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998764
No 80
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=9.3e-16 Score=133.70 Aligned_cols=88 Identities=32% Similarity=0.568 Sum_probs=82.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
......++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 005812 291 DWAVPKNI 298 (676)
Q Consensus 291 ~~a~~~~~ 298 (676)
.|+.++..
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 81
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=133.45 Aligned_cols=84 Identities=25% Similarity=0.476 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++ |+ +..|+|+.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~-----~~~~~g~~ 80 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH-----FHDIMGKK 80 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC-----CCBSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC-----CCEECCeE
Confidence 3456899999999999999999999999999999999998889999999999999999999998 99 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 81 l~V~~a~~~~ 90 (99)
T 2dgs_A 81 VEVKRAEPRD 90 (99)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCc
Confidence 9999998764
No 82
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=132.51 Aligned_cols=83 Identities=24% Similarity=0.261 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCC
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~ 492 (676)
...+.++|||+|||+.+++++|+++|++||.|.. ++++.++.++.++|||||+|.+.++|.+|++.||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~---- 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD---- 84 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC----
Confidence 3445689999999999999999999999999999 9999998899999999999999999999999999
Q ss_pred CCeeecCcEEEEEEcc
Q 005812 493 LGIFLKGRQLTVLKAL 508 (676)
Q Consensus 493 ~g~~l~gr~l~v~~a~ 508 (676)
|..|+|+.|.|.+|.
T Consensus 85 -g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 -GKEFSGNPIKVSFAT 99 (99)
T ss_dssp -TCBSSSSBCEEEECC
T ss_pred -CCEeCCcEEEEEecC
Confidence 999999999999973
No 83
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=130.92 Aligned_cols=84 Identities=25% Similarity=0.357 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecC
Q 005812 292 WAVP 295 (676)
Q Consensus 292 ~a~~ 295 (676)
|+.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 84
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=133.54 Aligned_cols=83 Identities=33% Similarity=0.462 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v-~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
++++|||+|||+.+++++|+++|+.||.|..+ +|+.++.++.++|||||+|.+.++|.+|+..|| +..|+|++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 78 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN-----GQYLCNRPI 78 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT-----TCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC-----CCEECCEEE
Confidence 35899999999999999999999999999999 999998899999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 79 ~v~~a~~~~ 87 (96)
T 1x5t_A 79 TVSYAFKKD 87 (96)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccC
Confidence 999998764
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.2e-17 Score=136.47 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
....++|||+|||+++|+++|+++|++||.|.+|.++.+.. +.++|||||+|.+.++|.+|+. ++ +..|+|+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~-----~~~~~gr~ 80 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TP-----GQKYKETD 80 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SS-----CCCCTTTT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cC-----CCEECCEE
Confidence 34468999999999999999999999999999999999876 9999999999999999999998 89 99999999
Q ss_pred EEEEEccCc
Q 005812 502 LTVLKALDK 510 (676)
Q Consensus 502 l~v~~a~~k 510 (676)
|.|.++..-
T Consensus 81 l~V~~~~~~ 89 (103)
T 1s79_A 81 LLILFKDDY 89 (103)
T ss_dssp CEEEEHHHH
T ss_pred EEEEEchHH
Confidence 999997653
No 86
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=135.02 Aligned_cols=84 Identities=23% Similarity=0.377 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+.++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|| +..|+|+.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT-----TEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 346899999999999999999999999999999999998889999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998764
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=134.26 Aligned_cols=86 Identities=22% Similarity=0.506 Sum_probs=81.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 997753
No 88
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=133.12 Aligned_cols=87 Identities=30% Similarity=0.440 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45577899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987654
No 89
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=130.84 Aligned_cols=83 Identities=30% Similarity=0.411 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Eec
Q 005812 292 WAV 294 (676)
Q Consensus 292 ~a~ 294 (676)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 90
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=2.6e-16 Score=136.02 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...++++|||+|||+.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~ 96 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-----GAEIMGQ 96 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCc
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 97 ~l~V~~a~~~~ 107 (110)
T 1oo0_B 97 TIQVDWCFVKG 107 (110)
T ss_dssp ECEEEESEESS
T ss_pred EEEEEEcccCC
Confidence 99999988653
No 91
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=130.89 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCe--eec
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI--FLK 498 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~--~l~ 498 (676)
...++++|||+|||+++++++|+++|++||.|.+|++++ ++|||||+|.+.++|.+|+..|+ +. .|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln-----~~~~~i~ 85 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAA-----DNQIYIA 85 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHH-----HSCEEET
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhc-----CCCceeC
Confidence 344678999999999999999999999999999998874 37899999999999999999998 54 589
Q ss_pred CcEEEEEEccCch
Q 005812 499 GRQLTVLKALDKK 511 (676)
Q Consensus 499 gr~l~v~~a~~k~ 511 (676)
||+|.|.++.+++
T Consensus 86 Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 86 GHPAFVNYSTSQK 98 (100)
T ss_dssp TEEEEEEECSCSC
T ss_pred CcEEEEEeccccc
Confidence 9999999998753
No 92
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=133.52 Aligned_cols=88 Identities=26% Similarity=0.385 Sum_probs=82.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
......++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 005812 291 DWAVPKNI 298 (676)
Q Consensus 291 ~~a~~~~~ 298 (676)
.|+.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987653
No 93
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=7.5e-17 Score=133.89 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=72.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCC--ceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
.+|||+|||+++++++|+++|+.|| .|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 005812 295 PKN 297 (676)
Q Consensus 295 ~~~ 297 (676)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 94
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=5.8e-16 Score=131.05 Aligned_cols=84 Identities=25% Similarity=0.465 Sum_probs=79.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEE--------EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--------VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 282 (676)
......++|||+|||.++++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|++|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45567799999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred eCCeeEEEEEec
Q 005812 283 FGKRPIAVDWAV 294 (676)
Q Consensus 283 ~~g~~i~v~~a~ 294 (676)
+.|+.|+|.++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999973
No 95
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=5.5e-16 Score=132.78 Aligned_cols=84 Identities=25% Similarity=0.279 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC--
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG-- 499 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g-- 499 (676)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|| +..+.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~gg~ 85 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALH-----GSQTMPGA 85 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHS-----SCCCCTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHc-----CCccCCCC
Confidence 3456899999999999999999999999999999999987 78999999999999999999999999 999988
Q ss_pred -cEEEEEEccCch
Q 005812 500 -RQLTVLKALDKK 511 (676)
Q Consensus 500 -r~l~v~~a~~k~ 511 (676)
++|.|.++.++.
T Consensus 86 ~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 86 SSSLVVKFADTDK 98 (105)
T ss_dssp SSCCEEEESCSSC
T ss_pred CccEEEEECccCc
Confidence 999999998764
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=133.86 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|+.. +..|.|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~---~~~l~Gr~ 83 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSV---TPVLRGQP 83 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTS---CCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccC---CceECCEE
Confidence 345689999999999999999999999999999998854 799999999999999999988611 47999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.+|.++.
T Consensus 84 l~V~~A~~~~ 93 (105)
T 1sjq_A 84 IYIQFSNHKE 93 (105)
T ss_dssp CCBCCCSSSS
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 97
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=131.82 Aligned_cols=85 Identities=32% Similarity=0.518 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEE-EEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
...++|||+|||..+++++|+++|+.||.|..+ .|+.++.++.++|||||+|.+.++|++|+..|||..|.|+.|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 005812 293 AVPKNI 298 (676)
Q Consensus 293 a~~~~~ 298 (676)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 98
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=134.98 Aligned_cols=86 Identities=26% Similarity=0.347 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 83 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD-----GAELDGR 83 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS-----SCCBTTB
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC-----CCEECCc
Confidence 34456899999999999999999999999999999999998889999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999998653
No 99
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=133.81 Aligned_cols=86 Identities=27% Similarity=0.573 Sum_probs=80.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997653
No 100
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=134.67 Aligned_cols=84 Identities=30% Similarity=0.530 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+.++|||+|||+.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|++.|| +..|+|++|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN-----GKSVDGRQI 84 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT-----TCCTTSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCeEE
Confidence 346899999999999999999999999999999999998889999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 85 ~v~~a~~~~ 93 (102)
T 1x5s_A 85 RVDQAGKSS 93 (102)
T ss_dssp EEEEEECCC
T ss_pred EEEECCCCC
Confidence 999998764
No 101
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=9.7e-17 Score=135.97 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=79.0
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-ee
Q 005812 215 QKWKLIIRNIPF------KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK-RP 287 (676)
Q Consensus 215 ~~~~v~V~nLp~------~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~ 287 (676)
..++|||+|||+ .+++++|+++|++||.|.+|.|++++.+|+++|||||+|.+.++|.+|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEEecCCC
Q 005812 288 IAVDWAVPKN 297 (676)
Q Consensus 288 i~v~~a~~~~ 297 (676)
|.|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997653
No 102
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=5.5e-16 Score=135.14 Aligned_cols=87 Identities=29% Similarity=0.401 Sum_probs=81.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987654
No 103
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=134.04 Aligned_cols=86 Identities=28% Similarity=0.425 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHc-CCCCCCCeeec
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH-QVTKRPKGTGFLKFKTVEAATAAVSAS-KTTSGLGIFLK 498 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~-~~~~~~~g~afV~F~t~~~A~~Al~~l-~~~~~~g~~l~ 498 (676)
...+.++|||+|||+.+++++|+++|+.||.|..|.|+.+ ..++.++|||||+|.+.++|.+|+..| | +..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-----~~~~~ 85 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH-----STHLY 85 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT-----CCBSS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc-----CCeEC
Confidence 3445689999999999999999999999999999999988 778999999999999999999999999 9 99999
Q ss_pred CcEEEEEEccCch
Q 005812 499 GRQLTVLKALDKK 511 (676)
Q Consensus 499 gr~l~v~~a~~k~ 511 (676)
|+.|.|.++.++.
T Consensus 86 g~~l~v~~a~~~~ 98 (107)
T 2cph_A 86 GRRLVLEWADSEV 98 (107)
T ss_dssp SCBCEEEECCCCC
T ss_pred CCEEEEEeCCCCC
Confidence 9999999998764
No 104
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=133.06 Aligned_cols=87 Identities=28% Similarity=0.481 Sum_probs=81.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
......++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 005812 291 DWAVPKN 297 (676)
Q Consensus 291 ~~a~~~~ 297 (676)
.|+.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9997654
No 105
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=132.35 Aligned_cols=83 Identities=27% Similarity=0.338 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV---TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~---~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
+.++|||+|||+.+++++|+++|+.||.|..|.++.+.. ++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 78 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ-----GHTVDGH 78 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST-----TCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC-----CCeeCCe
Confidence 357999999999999999999999999999999998876 55889999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 79 ~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 KLEVRISERAT 89 (98)
T ss_dssp ECEEECSSCSS
T ss_pred EEEEEEccCCC
Confidence 99999998754
No 106
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=8.2e-16 Score=126.73 Aligned_cols=80 Identities=30% Similarity=0.499 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++. + +..|+|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~-----~~~~~g~~ 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-K-----EHRLDGRV 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-S-----CEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-C-----CCEECCEE
Confidence 34568999999999999999999999999999999999988999999999999999999999965 6 78899999
Q ss_pred EEEEEc
Q 005812 502 LTVLKA 507 (676)
Q Consensus 502 l~v~~a 507 (676)
|.|.+|
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999885
No 107
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=9.2e-16 Score=138.61 Aligned_cols=87 Identities=23% Similarity=0.434 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 420 GEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 420 ~~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
......++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|| +..|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g 111 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN-----GFNILN 111 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT-----TEECSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECC
Confidence 345567899999999999999999999999999999999998889999999999999999999999999 999999
Q ss_pred cEEEEEEccCch
Q 005812 500 RQLTVLKALDKK 511 (676)
Q Consensus 500 r~l~v~~a~~k~ 511 (676)
+.|.|.++.++.
T Consensus 112 ~~l~v~~a~~~~ 123 (139)
T 1u6f_A 112 KRLKVALAASGH 123 (139)
T ss_dssp CEEEEEESSCCC
T ss_pred eEEEEEECCCCC
Confidence 999999998764
No 108
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.7e-16 Score=132.42 Aligned_cols=88 Identities=28% Similarity=0.457 Sum_probs=82.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
......++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34557789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 005812 291 DWAVPKNI 298 (676)
Q Consensus 291 ~~a~~~~~ 298 (676)
.|+.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99987653
No 109
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=130.26 Aligned_cols=82 Identities=27% Similarity=0.388 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|.+|+..|| +..|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 86 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLN-----GIRLYGRP 86 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhC-----CCEECCCE
Confidence 34568999999999999999999999999999999999875 8899999999999999999999999 99999999
Q ss_pred EEEEEccC
Q 005812 502 LTVLKALD 509 (676)
Q Consensus 502 l~v~~a~~ 509 (676)
|.|.++.+
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999763
No 110
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.9e-16 Score=132.62 Aligned_cols=87 Identities=26% Similarity=0.411 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC------CceeCC
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN------GQKFGK 285 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~~~~~g 285 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999999899999999999999999999999999 999999
Q ss_pred eeEEEEEecCCCC
Q 005812 286 RPIAVDWAVPKNI 298 (676)
Q Consensus 286 ~~i~v~~a~~~~~ 298 (676)
+.|.|.|+.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987653
No 111
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=4.9e-16 Score=124.44 Aligned_cols=72 Identities=24% Similarity=0.324 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.|| +..++||+|.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln-----~~~l~gr~I~V 75 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALN-----NCVLANTTIFA 75 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHT-----TEEETTEEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhc-----CCEECCcEEEE
Confidence 46899999999999999999999999999998853 69999999999999999999999 99999999999
Q ss_pred EEc
Q 005812 505 LKA 507 (676)
Q Consensus 505 ~~a 507 (676)
.+|
T Consensus 76 ~~A 78 (89)
T 2wbr_A 76 ESP 78 (89)
T ss_dssp ECC
T ss_pred EEC
Confidence 998
No 112
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=6.4e-16 Score=128.00 Aligned_cols=80 Identities=21% Similarity=0.459 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+ .|| +..|+|+.|.|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~-----g~~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD-----ESLFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC-----CCEECCcEEEE
Confidence 479999999999999999999999999999999999889999999999999999999999 999 99999999999
Q ss_pred EEccCc
Q 005812 505 LKALDK 510 (676)
Q Consensus 505 ~~a~~k 510 (676)
.++.++
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 998764
No 113
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=6e-16 Score=142.03 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCC--ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..++|||+|||+.+++++|+++|+.|| .|..|+|+.|+.+|.++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln-----g~~~~Gr~ 128 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP-----GKVLNGEK 128 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST-----TCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 357999999999999999999999999 99999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccCchh
Q 005812 502 LTVLKALDKKL 512 (676)
Q Consensus 502 l~v~~a~~k~~ 512 (676)
|.|.+|.++..
T Consensus 129 l~V~~a~~~~~ 139 (156)
T 3n9u_C 129 VDVRPATRQNL 139 (156)
T ss_dssp CEEEECCHHHH
T ss_pred eEEEEcCCCcc
Confidence 99999987653
No 114
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=4.7e-16 Score=144.81 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.++++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| |..|.|++|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-----GAEIMGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC-----CCEECCEEE
Confidence 346899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEccCchh
Q 005812 503 TVLKALDKKL 512 (676)
Q Consensus 503 ~v~~a~~k~~ 512 (676)
.|.|+.++..
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999987653
No 115
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=9e-16 Score=130.90 Aligned_cols=83 Identities=27% Similarity=0.383 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|+.|| |..|.|+.+..++.++|||||+|.+.++|.+|+ .|| +..|+|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~ 84 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD-----GALLGDRS 84 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT-----TCEETTEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC-----CCeECCeE
Confidence 34468999999999999999999999997 999999999889999999999999999999999 899 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dng_A 85 LRVDIAEGRK 94 (103)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998764
No 116
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=134.53 Aligned_cols=86 Identities=34% Similarity=0.534 Sum_probs=80.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
..++|||+|||+.+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|++.|| |..|+|+.|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN-----GREFSGRALR 81 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS-----SBSCSSSCBE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeeCCcEEE
Confidence 35799999999999999999999999999999999998889999999999999999999999999 9999999999
Q ss_pred EEEccCchhhh
Q 005812 504 VLKALDKKLAH 514 (676)
Q Consensus 504 v~~a~~k~~~~ 514 (676)
|.++.++....
T Consensus 82 v~~a~~~~~~~ 92 (104)
T 1p1t_A 82 VDNAASEKNKE 92 (104)
T ss_dssp EEETTCTTHHH
T ss_pred EEeCCCccchh
Confidence 99998876544
No 117
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9.6e-16 Score=131.75 Aligned_cols=87 Identities=34% Similarity=0.649 Sum_probs=81.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEccc-CCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKF-NGQKFGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~i~ 289 (676)
.....++|||+|||..+++++|+++|+.||.|..|.|+.+ +.++.++|||||+|.+.++|.+|+..| |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4556789999999999999999999999999999999998 778999999999999999999999999 99999999999
Q ss_pred EEEecCCCC
Q 005812 290 VDWAVPKNI 298 (676)
Q Consensus 290 v~~a~~~~~ 298 (676)
|.|+.++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987653
No 118
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=136.28 Aligned_cols=83 Identities=22% Similarity=0.353 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .|| +..|+|+.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~l 96 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT-----GQRLLGVPI 96 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT-----TEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC-----CCEeCCeEE
Confidence 34589999999999999999999999999999999999888999999999999999999999 999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 97 ~V~~a~~~~ 105 (114)
T 2cq4_A 97 IVQASQAEK 105 (114)
T ss_dssp EEEEHHHHH
T ss_pred EEEecCCCc
Confidence 999987654
No 119
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=6.4e-16 Score=135.40 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.|| +..|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 110 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN-----GFQVGTK 110 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC-----CCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 34557899999999999999999999999999999999998889999999999999999999999999 9999999
Q ss_pred EEEEEEcc
Q 005812 501 QLTVLKAL 508 (676)
Q Consensus 501 ~l~v~~a~ 508 (676)
.|.|.+++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999974
No 120
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=6.4e-16 Score=133.55 Aligned_cols=86 Identities=29% Similarity=0.541 Sum_probs=81.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997654
No 121
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=130.57 Aligned_cols=86 Identities=24% Similarity=0.331 Sum_probs=80.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceE-EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee---
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW-NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP--- 287 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~--- 287 (676)
.....++|||+|||+++++++|+++|++||.|. .|.|++++.++.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 445678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred -EEEEEecCCC
Q 005812 288 -IAVDWAVPKN 297 (676)
Q Consensus 288 -i~v~~a~~~~ 297 (676)
|+|.|+.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997754
No 122
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=1.5e-15 Score=129.99 Aligned_cols=86 Identities=23% Similarity=0.401 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC---eeE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK---RPI 288 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~i 288 (676)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999987 78999999999999999999999999999988 999
Q ss_pred EEEEecCCCC
Q 005812 289 AVDWAVPKNI 298 (676)
Q Consensus 289 ~v~~a~~~~~ 298 (676)
.|.|+.++..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987653
No 123
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=130.97 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCcee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVV-SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
.+.++|||+|||+.+++++|+++|++||.|. .|+++.++.++.++|||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN-----GKPLPGAT 81 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT-----TSEESSCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc-----CCccCCCC
Confidence 3468999999999999999999999999999 99999998899999999999999999999999999 99999999
Q ss_pred ----EEEEEccCc
Q 005812 502 ----LTVLKALDK 510 (676)
Q Consensus 502 ----l~v~~a~~k 510 (676)
|.|.||.+.
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 999998764
No 124
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=129.73 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4456789999999999999999999999999999999987 78899999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987653
No 125
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=3e-16 Score=139.31 Aligned_cols=86 Identities=22% Similarity=0.423 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln-----g~~i~g~ 116 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-----GMELDGR 116 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT-----TCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
+|.|.++.++.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999988753
No 126
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=131.62 Aligned_cols=83 Identities=30% Similarity=0.440 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKP 84 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHT-----TCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhC-----CCEeCCcE
Confidence 345689999999999999999999999999999999887 78899999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2d9p_A 85 LYVALAQRKE 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEecccc
Confidence 9999998764
No 127
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=1e-15 Score=131.57 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..++++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|| +..|+|+.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 99 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYN-----GVPLDGRP 99 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC-----CCEeCCcE
Confidence 3456899999999999999999999999999999999997 89999999999999999999999999 99999999
Q ss_pred EEEEEcc
Q 005812 502 LTVLKAL 508 (676)
Q Consensus 502 l~v~~a~ 508 (676)
|.|.++.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999975
No 128
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.9e-15 Score=128.89 Aligned_cols=85 Identities=24% Similarity=0.479 Sum_probs=79.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.|| |..|.|+.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 455678999999999999999999999997 999999999989999999999999999999999 799999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987653
No 129
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=132.16 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT-KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
.+.++|||+|||+.+++++|+++|+.|| |..|.|+.+..+ +.++|||||+|.+.++|.+|+ .|| +..|+|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-----EESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG-----TCEETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC-----CCEeCCcE
Confidence 3458999999999999999999999999 999999999877 899999999999999999999 999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 86 l~V~~a~~~~ 95 (104)
T 1wi8_A 86 IRVDVADQAQ 95 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999998764
No 130
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.5e-16 Score=129.77 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCC---CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD---TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999998876 5589999999999999999999999999999999999
Q ss_pred EEecCCC
Q 005812 291 DWAVPKN 297 (676)
Q Consensus 291 ~~a~~~~ 297 (676)
.|+.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997764
No 131
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=8.3e-16 Score=127.00 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCC-ceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGL-SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
..++|||+|||.++++++|+++|++||.|.++.++.+..++. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999999877665 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 005812 294 VPKN 297 (676)
Q Consensus 294 ~~~~ 297 (676)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 132
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=128.00 Aligned_cols=81 Identities=17% Similarity=0.362 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKR-PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~-~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
.++|||+|||+.+++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|+..|| |..|+|+.|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 78 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD-----GGQIDGQEIT 78 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC-----CCeECCeEEE
Confidence 47999999999999999999999999999999998876655 89999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 005812 504 VLKALDK 510 (676)
Q Consensus 504 v~~a~~k 510 (676)
|.++.+.
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998764
No 133
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-15 Score=128.41 Aligned_cols=83 Identities=24% Similarity=0.281 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 84 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMN-----GRKILGKE 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHT-----TEEETTEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhC-----CCCcCCCe
Confidence 34568999999999999999999999999999999998853 368999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2cqi_A 85 VKVNWATTPS 94 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEECCCCc
Confidence 9999998754
No 134
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=134.33 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
...++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.|| |..|+|+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~-----g~~~~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMN-----GKSLHGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCS-----SCBCSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCEEE
Confidence 345899999999999999999999999999999999987 89999999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 999998754
No 135
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.7e-16 Score=131.85 Aligned_cols=85 Identities=24% Similarity=0.436 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+.. + +..|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~-----~~~~~g~ 85 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R-----PHTLDGR 85 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C-----SEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C-----CCeECCE
Confidence 344568999999999999999999999999999999999988999999999999999999999998 9 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 99999998764
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=2.5e-16 Score=137.36 Aligned_cols=81 Identities=23% Similarity=0.402 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||..+++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445689999999999999999999999999999999875 44689999999999999999999999999999999999
Q ss_pred ecCC
Q 005812 293 AVPK 296 (676)
Q Consensus 293 a~~~ 296 (676)
+.+.
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 8653
No 137
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=128.88 Aligned_cols=84 Identities=23% Similarity=0.498 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 83 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLH-----GTVVEGR 83 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 344568999999999999999999999999999999998753 389999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cq3_A 84 KIEVNNATARV 94 (103)
T ss_dssp ECEEEECCSSC
T ss_pred EEEEEEcccCC
Confidence 99999998764
No 138
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=7.9e-16 Score=128.20 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce--eCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~--~~g~~i~ 289 (676)
...++++|||+|||.++++++|+++|++||.|.+|.+++ .+|||||+|.+.++|..|++.|++.. +.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 455778999999999999999999999999999999986 56899999999999999999999875 7899999
Q ss_pred EEEecCCC
Q 005812 290 VDWAVPKN 297 (676)
Q Consensus 290 v~~a~~~~ 297 (676)
|.|++++.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998764
No 139
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=6.3e-16 Score=123.78 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
.....|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|.+|++.||+..+.|+.|+|.++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4567899999999999999999999999999999976 6899999999999999999999999999999999998
Q ss_pred c
Q 005812 294 V 294 (676)
Q Consensus 294 ~ 294 (676)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 140
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=5.6e-16 Score=132.98 Aligned_cols=85 Identities=27% Similarity=0.359 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee---c
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL---K 498 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l---~ 498 (676)
..+.++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..|| +..+ .
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~~~ 84 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH-----EQKTLPGM 84 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT-----TTCCCTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc-----CCcccCCC
Confidence 3456899999999999999999999999999999999998889999999999999999999999999 8887 8
Q ss_pred CcEEEEEEccCch
Q 005812 499 GRQLTVLKALDKK 511 (676)
Q Consensus 499 gr~l~v~~a~~k~ 511 (676)
|++|.|.++.++.
T Consensus 85 g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 85 NRPIQVKPADSES 97 (106)
T ss_dssp SSCCEEEECCCCS
T ss_pred CceEEEEECCccc
Confidence 9999999998754
No 141
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.5e-15 Score=125.08 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 45577899999999999999999999999999999999998899999999999999999999997 58899999999998
Q ss_pred Ee
Q 005812 292 WA 293 (676)
Q Consensus 292 ~a 293 (676)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 142
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=126.22 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
...++|||+|||+.+++++|+++|+.| .|..|.|+.+ .++.++|||||+|.+.++|.+|+. || +..|+|+.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~-----g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CN-----REYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SC-----SEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hC-----CceeCCcEE
Confidence 345899999999999999999999999 9999999998 789999999999999999999999 99 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 80 ~v~~a~~~~ 88 (91)
T 2dgw_A 80 EVFREKSGP 88 (91)
T ss_dssp EEEEESSCC
T ss_pred EEEECCcCC
Confidence 999998763
No 143
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=130.53 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
..++|||+|||+.+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|++.|| +..|+|+.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l~ 88 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-----DRPIGSRKVK 88 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT-----TCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC-----CCeeCCeEEE
Confidence 35799999999999999999999999999988888888899999999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 005812 504 VLKALDK 510 (676)
Q Consensus 504 v~~a~~k 510 (676)
|.++..+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998754
No 144
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.1e-16 Score=133.99 Aligned_cols=85 Identities=25% Similarity=0.297 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCcee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCC
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVV--------SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 493 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~ 493 (676)
..+.++|||+|||+.+++++|+++|+.||.|. .|+|+.++.++.++|||||+|.+.++|.+|+..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~----- 86 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD----- 86 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT-----
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC-----
Confidence 34568999999999999999999999999999 59999998899999999999999999999999999
Q ss_pred CeeecCcEEEEEEccCch
Q 005812 494 GIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 494 g~~l~gr~l~v~~a~~k~ 511 (676)
+..|.|+.|.|.++.++.
T Consensus 87 g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 87 GKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp TCEETTEECEEECSSCCC
T ss_pred CCccCCCEEEEEECCCCC
Confidence 999999999999998764
No 145
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.6e-16 Score=132.48 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHh-CCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCee-ecC
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSA-FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF-LKG 499 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~-l~g 499 (676)
..+.++|||+|||+.+++++|+++|+. ||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|+ +.. |+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~~g 79 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQ-----GAVGLGS 79 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTT-----TCCSSSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHcc-----CCcccCC
Confidence 345689999999999999999999999 9999999999997 89999999999999999999999999 999 999
Q ss_pred cEEEEEEccCch
Q 005812 500 RQLTVLKALDKK 511 (676)
Q Consensus 500 r~l~v~~a~~k~ 511 (676)
++|.|.++.++.
T Consensus 80 ~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 KPVRLSVAIPKA 91 (104)
T ss_dssp SCCCCCBCCCCC
T ss_pred EeEEEEEccCCC
Confidence 999999997764
No 146
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=9.6e-16 Score=126.91 Aligned_cols=80 Identities=24% Similarity=0.373 Sum_probs=76.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.++|||+|||..+++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999889999999999999999999999 8999999999999999876
Q ss_pred C
Q 005812 296 K 296 (676)
Q Consensus 296 ~ 296 (676)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 147
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=132.34 Aligned_cols=84 Identities=24% Similarity=0.433 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..++ + .|.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~-----~-~~~g~ 86 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-----P-IIDGR 86 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS-----C-EETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC-----C-cCCCE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 8 89999
Q ss_pred EEEEEEccCc
Q 005812 501 QLTVLKALDK 510 (676)
Q Consensus 501 ~l~v~~a~~k 510 (676)
.|.|.++.++
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 9999998764
No 148
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.5e-15 Score=128.13 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+. + +..|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~-----~~~~~g~ 83 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--Q-----RHMIDGR 83 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--S-----CEEETTE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--c-----CCeeCCe
Confidence 34456899999999999999999999999999999999998889999999999999999999998 4 6799999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cqg_A 84 WCDCKLPNSKQ 94 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEEecCCCC
Confidence 99999998764
No 149
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=128.26 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 424 LQNTIFICNLPFDLDNEEVK----QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
.+++|||+|||+.+++++|+ ++|++||.|..|+|+.+..+ +|||||+|.+.++|.+|+..|| |..|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~-----g~~~~g 79 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLH-----RYKIGS 79 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHT-----TEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhC-----CCEECC
Confidence 45799999999999999999 99999999999999988654 8899999999999999999999 999999
Q ss_pred cEEEEEEccCc
Q 005812 500 RQLTVLKALDK 510 (676)
Q Consensus 500 r~l~v~~a~~k 510 (676)
++|.|.+|.++
T Consensus 80 r~l~V~~a~~~ 90 (96)
T 2dgx_A 80 KKILVSLATGA 90 (96)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEEcCCC
Confidence 99999999765
No 150
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=1e-15 Score=131.35 Aligned_cols=87 Identities=26% Similarity=0.390 Sum_probs=81.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCee
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRP 287 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~ 287 (676)
......++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456678999999999999999999999999999999999998999999999999999999999999999988 8999
Q ss_pred EEEEEecCCC
Q 005812 288 IAVDWAVPKN 297 (676)
Q Consensus 288 i~v~~a~~~~ 297 (676)
|.|.|+.++.
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999997764
No 151
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=129.75 Aligned_cols=85 Identities=24% Similarity=0.428 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCC-CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT-GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.....++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ +.++|||||+|.+.++|++|+ .|++..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999887 899999999999999999999 89999999999999
Q ss_pred EEecCCCC
Q 005812 291 DWAVPKNI 298 (676)
Q Consensus 291 ~~a~~~~~ 298 (676)
.++.++..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 152
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=7.3e-16 Score=136.84 Aligned_cols=87 Identities=26% Similarity=0.423 Sum_probs=81.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
......++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|+..|+|..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 005812 291 DWAVPKN 297 (676)
Q Consensus 291 ~~a~~~~ 297 (676)
.|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997754
No 153
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=7.5e-16 Score=132.68 Aligned_cols=85 Identities=22% Similarity=0.383 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...++++|||+|||+.+++++|+++|+.||.|..|+++.+..+|.++|||||+|.+.++|.+|+..+ +..|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~------~~~l~g~ 94 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS------RHELDSK 94 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS------CEEETTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC------CCcCCCE
Confidence 3445689999999999999999999999999999999999888999999999999999999999875 5899999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 95 ~l~V~~a~~~~ 105 (109)
T 2rs2_A 95 TIDPKVAFPRR 105 (109)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 99999998764
No 154
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.63 E-value=2.1e-15 Score=129.63 Aligned_cols=83 Identities=25% Similarity=0.424 Sum_probs=78.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
......++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345677999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEec
Q 005812 291 DWAV 294 (676)
Q Consensus 291 ~~a~ 294 (676)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 155
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=131.55 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=81.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceE--------EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 283 (676)
.....++|||+|||+.+++++|+++|+.||.|. .|.|+.++.++.++|||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455678999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCeeEEEEEecCCCC
Q 005812 284 GKRPIAVDWAVPKNI 298 (676)
Q Consensus 284 ~g~~i~v~~a~~~~~ 298 (676)
.|+.|+|.|+.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987653
No 156
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=127.99 Aligned_cols=83 Identities=23% Similarity=0.365 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|++||.|.+|.|+.++. +.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 445678999999999999999999999999999999999875 8899999999999999999999999999999999999
Q ss_pred EecC
Q 005812 292 WAVP 295 (676)
Q Consensus 292 ~a~~ 295 (676)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9853
No 157
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=131.46 Aligned_cols=85 Identities=26% Similarity=0.403 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||.++++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|++|++.|+|..|.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 005812 293 AVPKNI 298 (676)
Q Consensus 293 a~~~~~ 298 (676)
+.+...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987653
No 158
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.6e-16 Score=131.14 Aligned_cols=81 Identities=21% Similarity=0.351 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||+++|+++|+++|++||.|.+|.|++++. |.++|||||+|.+.++|.+|+. +++..|.|+.|.|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999986 9999999999999999999999 899999999999998
Q ss_pred ecC
Q 005812 293 AVP 295 (676)
Q Consensus 293 a~~ 295 (676)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 159
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=4.5e-16 Score=130.65 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.|| +..|+|++|.|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~l~v 89 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-----DRPIGSRKVKL 89 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC-----CCeECCcEEEE
Confidence 4799999999999999999999999999998899988899999999999999999999999999 99999999999
Q ss_pred EEccC
Q 005812 505 LKALD 509 (676)
Q Consensus 505 ~~a~~ 509 (676)
.++.+
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 160
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=6.4e-16 Score=134.74 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..++++|||+|||+.+++++|+++|+.||.|..|.++.+ +.++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 76 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLS-----GFNVSNRY 76 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHT-----TCBSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 345689999999999999999999999999999998865 4569999999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 005812 502 LTVLKALDK 510 (676)
Q Consensus 502 l~v~~a~~k 510 (676)
|.|.++.++
T Consensus 77 l~v~~a~~~ 85 (115)
T 3lqv_A 77 LVVLYYNAN 85 (115)
T ss_dssp CEEEECCHH
T ss_pred EEEEEecCC
Confidence 999998754
No 161
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.2e-15 Score=133.58 Aligned_cols=83 Identities=27% Similarity=0.409 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Eec
Q 005812 292 WAV 294 (676)
Q Consensus 292 ~a~ 294 (676)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 873
No 162
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=127.01 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 287 (676)
.....++|||+|||+.+++++|+ ++|++||.|.+|.|+.++.+ +|||||+|.+.++|++|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999988654 789999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 005812 288 IAVDWAVPKN 297 (676)
Q Consensus 288 i~v~~a~~~~ 297 (676)
|+|.++.+..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999997754
No 163
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-15 Score=126.49 Aligned_cols=86 Identities=34% Similarity=0.517 Sum_probs=78.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
......++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456679999999999999999999999999999999998753 38999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 005812 291 DWAVPKNI 298 (676)
Q Consensus 291 ~~a~~~~~ 298 (676)
.|+.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99987653
No 164
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=1.3e-15 Score=126.91 Aligned_cols=82 Identities=29% Similarity=0.456 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+.++|||+|||+.+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+..|| +..|+|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~-----g~~~~g~~l 78 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMN-----GMKLSGREI 78 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHT-----TCCBTTBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 34689999999999999999999999999999998874 68899999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 999988754
No 165
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=129.05 Aligned_cols=85 Identities=21% Similarity=0.373 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred EecCC
Q 005812 292 WAVPK 296 (676)
Q Consensus 292 ~a~~~ 296 (676)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98654
No 166
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=1.8e-15 Score=126.06 Aligned_cols=84 Identities=31% Similarity=0.429 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||.++++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999874 78899999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.+..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 997764
No 167
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=133.40 Aligned_cols=83 Identities=24% Similarity=0.492 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+.. + +..|+|+.|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~-----~~~~~g~~l 98 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R-----PHSIDGRVV 98 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C-----SEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C-----CcEECCEEE
Confidence 3458999999999999999999999999999999999988899999999999999999999988 8 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 99 ~V~~a~~~~ 107 (116)
T 1x4b_A 99 EPKRAVARE 107 (116)
T ss_dssp EEECCSSCC
T ss_pred EEEECCCCc
Confidence 999998874
No 168
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=130.24 Aligned_cols=91 Identities=35% Similarity=0.504 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC-CCCCeeecC
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTT-SGLGIFLKG 499 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~-~~~g~~l~g 499 (676)
...+.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||.. ...+..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4445789999999999999999999999999999999999889999999999999999999999998610 011588999
Q ss_pred cEEEEEEccCch
Q 005812 500 RQLTVLKALDKK 511 (676)
Q Consensus 500 r~l~v~~a~~k~ 511 (676)
+.|.|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998764
No 169
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=127.24 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..++++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|+.. +..|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~---~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAV---TPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS---CCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC---CceECCcE
Confidence 345789999999999999999999999999999987643 799999999999999999987411 68899999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.|+.++.
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999998754
No 170
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=129.43 Aligned_cols=86 Identities=23% Similarity=0.425 Sum_probs=80.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcc-CCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce-eCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSP-VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~i~ 289 (676)
.....++|||+|||+++++++|+++|+. ||.|.+|.|+.++ ++.++|||||+|.+.++|.+|++.|++.. |.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEEecCCCC
Q 005812 290 VDWAVPKNI 298 (676)
Q Consensus 290 v~~a~~~~~ 298 (676)
|.++.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999977653
No 171
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.4e-16 Score=136.58 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
....++|||+|||+.+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||. || +..|+|+.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-----g~~~~gr~ 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH-----KQYMGNRF 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC-----SBCSTTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC-----CCeECCcE
Confidence 3456899999999999999999999999999986677777889999999999999999999999 99 99999999
Q ss_pred EEEEEccCchhhh
Q 005812 502 LTVLKALDKKLAH 514 (676)
Q Consensus 502 l~v~~a~~k~~~~ 514 (676)
|.|.++.+++...
T Consensus 96 i~V~~a~~~~~~~ 108 (124)
T 1wel_A 96 IQVHPITKKGMLE 108 (124)
T ss_dssp BEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
Confidence 9999998776443
No 172
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9e-16 Score=129.23 Aligned_cols=82 Identities=21% Similarity=0.388 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeeE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFGKRPI 288 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~i 288 (676)
......++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|++.|++ ..|.|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 35667889999999999999999999999999999999874 69999999999999999998864 78999999
Q ss_pred EEEEecCCCC
Q 005812 289 AVDWAVPKNI 298 (676)
Q Consensus 289 ~v~~a~~~~~ 298 (676)
+|.|+.++..
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 173
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-16 Score=139.96 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCe----
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI---- 495 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~--v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~---- 495 (676)
....++|||+|||+.+++++|+++|++||.|.. |+|++++.++.++|||||+|.+. +|.+|+..|| +.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~-----g~~~~~ 93 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ-----ALHPPL 93 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT-----TCCCSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc-----CCCCCc
Confidence 345689999999999999999999999999977 99999998999999999999999 9999999999 98
Q ss_pred eecCcEEEEEEccCc
Q 005812 496 FLKGRQLTVLKALDK 510 (676)
Q Consensus 496 ~l~gr~l~v~~a~~k 510 (676)
.|+||.|.|.++.++
T Consensus 94 ~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 94 TIDGKTINVEFAKGS 108 (131)
T ss_dssp CGGGCCCCCEECCCS
T ss_pred cCCCEEEEEEECCCC
Confidence 999999999999875
No 174
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-15 Score=129.11 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|++.|| +..|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 89 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRD-----GYDYDGY 89 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcC-----CCEECCe
Confidence 3445689999999999999999999999999999988654 4579999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 99999988753
No 175
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=8.7e-16 Score=136.25 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...++++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 92 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-----GQDLMGQ 92 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT-----TCBSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeeCCe
Confidence 33456899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 99999997654
No 176
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=4.4e-16 Score=124.43 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEE
Q 005812 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (676)
Q Consensus 427 ~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~ 506 (676)
+|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++ |+ +..|+|++|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~-----~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH-----FHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS-----CCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC-----CCEECCEEEEEEe
Confidence 48999999999999999999999999999999998889999999999999999999997 89 9999999999987
Q ss_pred c
Q 005812 507 A 507 (676)
Q Consensus 507 a 507 (676)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 177
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.8e-16 Score=130.95 Aligned_cols=83 Identities=31% Similarity=0.568 Sum_probs=79.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
..++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 005812 295 PKN 297 (676)
Q Consensus 295 ~~~ 297 (676)
++.
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 764
No 178
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=5.6e-16 Score=123.83 Aligned_cols=75 Identities=19% Similarity=0.371 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 218 ~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
+|||+|||+++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|++|++ |++..+.|+.|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999998 8999999999999875
No 179
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=130.67 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|++.|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 455679999999999999999999999999999999999988999999999999999999999999998 8999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.+..
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997653
No 180
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=133.35 Aligned_cols=84 Identities=23% Similarity=0.352 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ-VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~-~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
.....++|||+|||+.+++++|+++|+.|| |..|+++.+. .+|.++|||||+|.+.++|.+|+ .|+ |..|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~-----g~~~~g 87 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-----EESLGN 87 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT-----TCCBTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC-----CCEECC
Confidence 344568999999999999999999999999 9999999887 58999999999999999999999 899 999999
Q ss_pred cEEEEEEccCch
Q 005812 500 RQLTVLKALDKK 511 (676)
Q Consensus 500 r~l~v~~a~~k~ 511 (676)
+.|.|.++.+++
T Consensus 88 ~~l~V~~a~~~~ 99 (100)
T 2j76_E 88 RRIRVDVADQAQ 99 (100)
T ss_dssp BCCCCEECCCSC
T ss_pred eEEEEEeccCCC
Confidence 999999998753
No 181
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=132.14 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCce-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEV-VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
.+.++|||+|||+.+++++|+++|+.||.| ..|+|+.+. ++.++|||||+|.+.++|.+|+.. | +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~-----~~~~~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-H-----RKKLNGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-C-----SEEETTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-C-----CCccCCeE
Confidence 346899999999999999999999999999 889999997 899999999999999999999987 9 99999999
Q ss_pred EEEEEccCchhh
Q 005812 502 LTVLKALDKKLA 513 (676)
Q Consensus 502 l~v~~a~~k~~~ 513 (676)
|.|.++.++...
T Consensus 86 i~v~~a~~~~~~ 97 (114)
T 2cpy_A 86 AFVHVVTLEDMR 97 (114)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 999999876533
No 182
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=134.03 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCee
Q 005812 421 EDELQNTIFICNLPFDLDNEEVK----QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~ 496 (676)
...++++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|| |..
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~ln-----g~~ 96 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQ-----GYP 96 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHST-----TCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHC-----CCE
Confidence 44557899999999999999876 7999999999987643 57889999999999999999999999 999
Q ss_pred ecCcEEEEEEccCchhh
Q 005812 497 LKGRQLTVLKALDKKLA 513 (676)
Q Consensus 497 l~gr~l~v~~a~~k~~~ 513 (676)
|.|++|.|.||.++...
T Consensus 97 l~gr~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 97 FQGNPLVITFSETPQSQ 113 (127)
T ss_dssp CTTSCCEEEECCCCCHH
T ss_pred eCCCEEEEEEccCcchh
Confidence 99999999999887543
No 183
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=123.73 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+++++++|+++|+.| .|..|.|+.+ .+|+++|||||+|.+.++|.+|+. |||..|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 8999999998 689999999999999999999999 99999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 997753
No 184
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=8.5e-16 Score=128.97 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999898988888999999999999999999999999999999999999998
Q ss_pred ecC
Q 005812 293 AVP 295 (676)
Q Consensus 293 a~~ 295 (676)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 185
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=139.31 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--ceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
..++|||+|||+++++++|+++|+.|| .|.+|.|+.++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 005812 293 AVPKN 297 (676)
Q Consensus 293 a~~~~ 297 (676)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97653
No 186
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.5e-16 Score=131.27 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=71.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|+ +..++|+.|.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLD-----GKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHH-----HSCSSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHC-----CCeECCcEEEEE
Confidence 47999999999999999999999999999998866 68999999999999999999999 999999999999
Q ss_pred EccCch
Q 005812 506 KALDKK 511 (676)
Q Consensus 506 ~a~~k~ 511 (676)
++.++.
T Consensus 71 ~a~~~~ 76 (101)
T 2hvz_A 71 LSTGMP 76 (101)
T ss_dssp ESSSCC
T ss_pred EccCCC
Confidence 998764
No 187
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=130.70 Aligned_cols=83 Identities=23% Similarity=0.532 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
.....++|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~-----g~~~~g~ 97 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLH-----GTVVEGR 97 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 44456899999999999999999999999999999998885 3489999999999999999999999 9999999
Q ss_pred EEEEEEccCc
Q 005812 501 QLTVLKALDK 510 (676)
Q Consensus 501 ~l~v~~a~~k 510 (676)
.|.|.++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998875
No 188
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=2.2e-15 Score=131.64 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCc---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGE---VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
...++|||+|||+++++++|+++|+.||. |..|+|+.+.. ++++|||||+|.+.++|.+|++ +| +..|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~-----g~~~~g 87 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KD-----RESMGH 87 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GT-----TEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC-----CCeECC
Confidence 34689999999999999999999999999 89999999876 9999999999999999999998 99 999999
Q ss_pred cEEEEEEccCch
Q 005812 500 RQLTVLKALDKK 511 (676)
Q Consensus 500 r~l~v~~a~~k~ 511 (676)
|.|.|.++..++
T Consensus 88 r~i~V~~a~~~~ 99 (118)
T 2db1_A 88 RYIEVFKSHRTE 99 (118)
T ss_dssp EEEEEEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999987554
No 189
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-16 Score=129.36 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
++++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|| |..|.|+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~~~ 78 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-----ASGVQAQMAK 78 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH-----HHTCCEESCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc-----CCeEeeEEEe
Confidence 45899999999999999999999999999999999998899999999999999999999999999 9999999998
Q ss_pred EEEcc
Q 005812 504 VLKAL 508 (676)
Q Consensus 504 v~~a~ 508 (676)
+.++.
T Consensus 79 ~~~~~ 83 (85)
T 1x4e_A 79 QSGPS 83 (85)
T ss_dssp SSCCC
T ss_pred ecCCC
Confidence 87654
No 190
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=1.2e-15 Score=136.04 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCc---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGE---VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+|++ || +..|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~-----g~~l~g 114 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KD-----RESMGH 114 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TT-----EEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC-----CCEECC
Confidence 34689999999999999999999999999 88999999976 9999999999999999999999 99 999999
Q ss_pred cEEEEEEccCch
Q 005812 500 RQLTVLKALDKK 511 (676)
Q Consensus 500 r~l~v~~a~~k~ 511 (676)
|.|.|.++.+++
T Consensus 115 r~i~V~~a~~~e 126 (136)
T 2hgl_A 115 RYIEVFKSHRTE 126 (136)
T ss_dssp SEEEEEECCHHH
T ss_pred EEEEEEECChHH
Confidence 999999987654
No 191
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=5.1e-15 Score=130.83 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...++++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~ 104 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK-----GVPLDGR 104 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHT-----TEESSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcC-----CCEECCc
Confidence 34557899999999999999999999999999999999987 89999999999999999999999999 9999999
Q ss_pred EEEEEEccCc
Q 005812 501 QLTVLKALDK 510 (676)
Q Consensus 501 ~l~v~~a~~k 510 (676)
.|.|.+|.+.
T Consensus 105 ~l~V~~a~~~ 114 (124)
T 2kt5_A 105 PMDIQLVASQ 114 (124)
T ss_dssp EEEEEEECCT
T ss_pred EEEEEEeCCC
Confidence 9999998765
No 192
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=1.9e-15 Score=134.06 Aligned_cols=87 Identities=26% Similarity=0.556 Sum_probs=81.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9977643
No 193
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.4e-15 Score=126.05 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4456789999999999999999999999999999999998533 68999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998754
No 194
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.8e-16 Score=127.02 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|++.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999988765
Q ss_pred c
Q 005812 294 V 294 (676)
Q Consensus 294 ~ 294 (676)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 195
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=129.62 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=80.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|+.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 455678999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9987654
No 196
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=9.9e-16 Score=130.13 Aligned_cols=76 Identities=30% Similarity=0.460 Sum_probs=71.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
++|||+|||.++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.|+|..+.|+.|.|.|+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999986 7899999999999999999999999999999999999775
Q ss_pred C
Q 005812 297 N 297 (676)
Q Consensus 297 ~ 297 (676)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 197
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=8.6e-16 Score=130.16 Aligned_cols=84 Identities=25% Similarity=0.461 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccC-CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT-DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.....++|||+|||.++++++|+++|+.|| |.+|.|+.++ .+|+++|||||+|.+.++|.+|+ .|+|..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999988 58999999999999999999999 79999999999999
Q ss_pred EEecCCC
Q 005812 291 DWAVPKN 297 (676)
Q Consensus 291 ~~a~~~~ 297 (676)
.++.+++
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997753
No 198
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.6e-15 Score=127.00 Aligned_cols=85 Identities=27% Similarity=0.376 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34557899999999999999999999999999999999987 68899999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.+..
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 986543
No 199
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=129.69 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.++++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|| +..|+|+.|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 86 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFN-----GQLLFDRPM 86 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhC-----CCEeCCCEE
Confidence 346899999999999999999999999999999999986 58899999999999999999999999 999999999
Q ss_pred EEEEccCc
Q 005812 503 TVLKALDK 510 (676)
Q Consensus 503 ~v~~a~~k 510 (676)
.|.++...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 99998753
No 200
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.1e-16 Score=129.90 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 423 ELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 423 ~~~~~l~V~nLp~-~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
.++++|||+|||+ .+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|..|+..|+.. +..|.||+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~---~~~~~Gr~ 83 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTT---PALVFGKP 83 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHS---CCEETTEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCC---CceECCcE
Confidence 3578999999999 9999999999999999999988754 589999999999999999998811 35699999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.+|..+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999998653
No 201
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-15 Score=133.86 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||.++++++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 005812 293 AVPKNI 298 (676)
Q Consensus 293 a~~~~~ 298 (676)
+.++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 202
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.7e-15 Score=128.98 Aligned_cols=84 Identities=21% Similarity=0.440 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee---
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL--- 497 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l--- 497 (676)
.....++|||+|||+.+++++|+++|+.||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..|| |..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~~~ 94 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFN-----GKFIKTP 94 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHB-----TCCCCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC-----CCEEcCC
Confidence 33456899999999999999999999999999999999997 89999999999999999999999999 8888
Q ss_pred -----cCcEEEEEEccCc
Q 005812 498 -----KGRQLTVLKALDK 510 (676)
Q Consensus 498 -----~gr~l~v~~a~~k 510 (676)
.+++|.|.|+.++
T Consensus 95 ~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 95 PGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TTSCCCSSCBEEEECCCS
T ss_pred ccccCCCCceeEEccCCC
Confidence 6888999998764
No 203
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=131.62 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..++++|||+|||+++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|++.|+.. +..|.|++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~---~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSV---TPVLRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHH---CCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccC---CceECCeE
Confidence 445789999999999999999999999999999998865 799999999999999999988711 36899999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.+|.++.
T Consensus 99 l~V~~a~~k~ 108 (119)
T 2ad9_A 99 IYIQFSNHKE 108 (119)
T ss_dssp CEEEECSSSS
T ss_pred EEEEEccCCC
Confidence 9999998764
No 204
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3.9e-15 Score=137.28 Aligned_cols=85 Identities=21% Similarity=0.265 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| +..|+|+.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~ 110 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN-----GTRLDDRI 110 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-----TSEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCeE
Confidence 3456899999999999999999999999999999999998889999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.|+.++.
T Consensus 111 l~V~~a~~~~ 120 (156)
T 1h2v_Z 111 IRTDWDAGFK 120 (156)
T ss_dssp CEEEEESCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 205
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=129.70 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=78.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH---HhhccCCceEEEEEcccCCCC---CceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIK---DMFSPVGLVWNVYIPHNTDTG---LSKGFAFVKFTCKRDAESAIQKFNGQKFGK 285 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~---~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 285 (676)
.....++|||+|||+++++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999999887643 566999999999999999999999999999
Q ss_pred eeEEEEEecCCC
Q 005812 286 RPIAVDWAVPKN 297 (676)
Q Consensus 286 ~~i~v~~a~~~~ 297 (676)
+.|.|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998775
No 206
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=129.95 Aligned_cols=83 Identities=22% Similarity=0.356 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHH---HHHHhCCceeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee
Q 005812 424 LQNTIFICNLPFDLDNEEVK---QRFSAFGEVVSFVPVLHQVTK---RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~---~~F~~~G~v~~v~i~~~~~~~---~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l 497 (676)
..++|||+|||+.+++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|.+|++.|| +..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln-----g~~~ 88 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN-----NVVV 88 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT-----TEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC-----CCEE
Confidence 45799999999999999999 999999999999998887543 566999999999999999999999 9999
Q ss_pred cCcEEEEEEccCch
Q 005812 498 KGRQLTVLKALDKK 511 (676)
Q Consensus 498 ~gr~l~v~~a~~k~ 511 (676)
+|++|.|.+|.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998764
No 207
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=5.3e-15 Score=133.77 Aligned_cols=82 Identities=23% Similarity=0.392 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...+.++|||+|||+.+++++|+++|++||.|..++++.++.++.++|||||+|.+.++|.+|++.|| +..|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 133 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGR 133 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST-----EEEETTE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEc
Q 005812 501 QLTVLKA 507 (676)
Q Consensus 501 ~l~v~~a 507 (676)
.|.|.+|
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999885
No 208
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=129.27 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+++++++|+++|+.| .|..|.|+.+.. |+++|||||+|.+.++|.+|+ .+| +..|+||.|.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~-----~~~~~gr~i~V 87 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRN-----RMLMIQRYVEV 87 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTT-----TEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcC-----CCeECCeEEEE
Confidence 4799999999999999999999999 899999999865 999999999999999999999 789 99999999999
Q ss_pred EEccCc
Q 005812 505 LKALDK 510 (676)
Q Consensus 505 ~~a~~k 510 (676)
..+..+
T Consensus 88 ~~a~~~ 93 (109)
T 2dnn_A 88 SPATER 93 (109)
T ss_dssp EECCHH
T ss_pred EECCcc
Confidence 988654
No 209
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.60 E-value=3.3e-15 Score=128.65 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|+..+ +..|.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999888999999999999999999999975 699999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
++.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998764
No 210
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=6.5e-16 Score=165.79 Aligned_cols=85 Identities=19% Similarity=0.397 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
...++|||+|||+.+|+++|..+|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 005812 294 VPKNI 298 (676)
Q Consensus 294 ~~~~~ 298 (676)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87644
No 211
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=128.99 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
...++|||+|||+++++++|+++|+.||.+ .|+|++++ +++++|||||+|.+.++|.+|+ .+| +..|+||.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~-----~~~~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKD-----KANMQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTS-----SCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhC-----CCeECCcEE
Confidence 345899999999999999999999999954 99999997 8999999999999999999999 579 999999999
Q ss_pred EEEEccCc
Q 005812 503 TVLKALDK 510 (676)
Q Consensus 503 ~v~~a~~k 510 (676)
.|.++.+.
T Consensus 85 ~V~~~~~~ 92 (102)
T 1wez_A 85 ELFLNSTA 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99997764
No 212
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=131.33 Aligned_cols=84 Identities=23% Similarity=0.247 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCc-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHc-CCCCCCC-eeecC
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPV-LHQVTKRPKGTGFLKFKTVEAATAAVSAS-KTTSGLG-IFLKG 499 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~-v~~v~i~-~~~~~~~~~g~afV~F~t~~~A~~Al~~l-~~~~~~g-~~l~g 499 (676)
+.++|||+|||+.+++++|+++|+.||. |..|.++ .+..++.++|||||+|.+.++|.+|+..| + | ..|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~-----g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMP-----GRIQLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTT-----CCSCBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhC-----CCceecC
Confidence 4589999999999999999999999998 9999888 77778899999999999999999999999 5 5 89999
Q ss_pred cEEEEEEccCchh
Q 005812 500 RQLTVLKALDKKL 512 (676)
Q Consensus 500 r~l~v~~a~~k~~ 512 (676)
+.|.|.||.++..
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 9999999988754
No 213
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=6.3e-15 Score=130.23 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987654
No 214
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=128.18 Aligned_cols=86 Identities=31% Similarity=0.421 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEc-ccCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeeE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIP-HNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPI 288 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~i 288 (676)
....++|||+|||+.+++++|+++|+.||. |.+|.++ .+..+|.++|||||+|.+.++|..|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446789999999999999999999999998 9999998 788888999999999999999999999996 589999999
Q ss_pred EEEEecCCCC
Q 005812 289 AVDWAVPKNI 298 (676)
Q Consensus 289 ~v~~a~~~~~ 298 (676)
.|.|+.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 215
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=133.10 Aligned_cols=86 Identities=23% Similarity=0.306 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...++++|||+|||+.+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~ 95 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN-----GYKLYGK 95 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST-----TCBCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC-----CCEeCCc
Confidence 34567899999999999999999999999999543332222368899999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 96 ~l~v~~a~~~~ 106 (115)
T 2cpx_A 96 ILVIEFGKNKK 106 (115)
T ss_dssp BCEEEECCCCS
T ss_pred EEEEEEccCCC
Confidence 99999998764
No 216
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.8e-15 Score=124.43 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999 5789999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987654
No 217
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=125.86 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc--eeCCeeEE
Q 005812 213 KTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ--KFGKRPIA 289 (676)
Q Consensus 213 ~~~~~~v~V~nLp~-~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~ 289 (676)
..+.++|||+|||+ .+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|++.|++. .|.|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44678999999999 9999999999999999999999874 489999999999999999998864 59999999
Q ss_pred EEEecCCC
Q 005812 290 VDWAVPKN 297 (676)
Q Consensus 290 v~~a~~~~ 297 (676)
|.|+....
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99997654
No 218
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=128.36 Aligned_cols=84 Identities=35% Similarity=0.531 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
......++|||+|||.++++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|++|+..|+|..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345677999999999999999999999999999999999885 348999999999999999999999999999999999
Q ss_pred EEecCC
Q 005812 291 DWAVPK 296 (676)
Q Consensus 291 ~~a~~~ 296 (676)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999775
No 219
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=127.97 Aligned_cols=84 Identities=23% Similarity=0.417 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCC------CHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 005812 213 KTQKWKLIIRNIPFKA------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~------~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 286 (676)
....++|||+|||+.+ ++++|+.+|++||.|.+|.|++ .+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446899999999999 7899999999999999999983 5789999999999999999999999999999998
Q ss_pred -eEEEEEecCCCC
Q 005812 287 -PIAVDWAVPKNI 298 (676)
Q Consensus 287 -~i~v~~a~~~~~ 298 (676)
.|.|.++.....
T Consensus 90 ~~l~V~~a~~~~k 102 (105)
T 2nlw_A 90 HTFRVNLFTDFDK 102 (105)
T ss_dssp CEEEEECSCCCCC
T ss_pred ceEEEEEcchHhh
Confidence 999999976543
No 220
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=9.3e-16 Score=123.19 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999988 9999999999987
No 221
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=127.89 Aligned_cols=81 Identities=22% Similarity=0.262 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCee
Q 005812 423 ELQNTIFICNLPFDL------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~------teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~ 496 (676)
..+++|||+|||+.+ ++++|+++|++||.|..|.++ ..+|.++|||||+|.+.++|.+|+..|| |..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~-----g~~ 85 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD-----GYK 85 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCS-----SEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhC-----Ccc
Confidence 346899999999999 789999999999999999887 3578999999999999999999999999 999
Q ss_pred ecCc-EEEEEEccCc
Q 005812 497 LKGR-QLTVLKALDK 510 (676)
Q Consensus 497 l~gr-~l~v~~a~~k 510 (676)
|+|+ +|.|.++...
T Consensus 86 ~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 86 LDKQHTFRVNLFTDF 100 (105)
T ss_dssp CSTTCEEEEECSCCC
T ss_pred cCCCceEEEEEcchH
Confidence 9998 9999998754
No 222
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=127.60 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS-FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~-v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
...++|||+|||+.+++++|+++|+.||.|.. |.|+.+ .+++++|||||+|.+.++|.+|+.. + +..|+||.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~-----~~~~~gr~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-H-----KERIGHRY 85 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-T-----TCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-C-----cchhCCcE
Confidence 34689999999999999999999999999987 878877 7899999999999999999999987 8 99999999
Q ss_pred EEEEEccCc
Q 005812 502 LTVLKALDK 510 (676)
Q Consensus 502 l~v~~a~~k 510 (676)
|.|.++.++
T Consensus 86 i~v~~~~~~ 94 (104)
T 1wg5_A 86 IEIFKSSRA 94 (104)
T ss_dssp CEEEEECTT
T ss_pred EEEEECCHH
Confidence 999998654
No 223
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=129.79 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 422 DELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~-~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
..++++|||+|||++ +++++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|+..|+.. +..|.||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~---~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKK---ALWFQGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHS---CCCSSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccC---CceECCE
Confidence 456789999999998 99999999999999999998863 4799999999999999999988611 4679999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
+|.|.++..+.
T Consensus 93 ~l~V~~a~~~~ 103 (112)
T 1x4f_A 93 CVKVDLSEKYK 103 (112)
T ss_dssp CCEEEEECSCS
T ss_pred EEEEEECcccc
Confidence 99999997654
No 224
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.3e-15 Score=125.34 Aligned_cols=84 Identities=29% Similarity=0.417 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEE-EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.....++|||+|||+.+++++|+++|+.||.|.. |.|+.+ .+|+++|||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888888 6899999999999999999999997 999999999999
Q ss_pred EEecCCC
Q 005812 291 DWAVPKN 297 (676)
Q Consensus 291 ~~a~~~~ 297 (676)
.++.++.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987654
No 225
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=7.7e-15 Score=135.33 Aligned_cols=86 Identities=24% Similarity=0.442 Sum_probs=81.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997754
No 226
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-14 Score=122.37 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh--CCceeCCeeEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF--NGQKFGKRPIAV 290 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~i~v 290 (676)
..+.++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|++.| ++..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 456789999999999999999999999999999998873 699999999999999999976 467899999999
Q ss_pred EEecCCCC
Q 005812 291 DWAVPKNI 298 (676)
Q Consensus 291 ~~a~~~~~ 298 (676)
.|+.++..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99987654
No 227
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=6.5e-16 Score=128.23 Aligned_cols=81 Identities=31% Similarity=0.497 Sum_probs=74.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
++|||+|||.++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.+ |.+|+..|||..+.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999999776
Q ss_pred CC
Q 005812 297 NI 298 (676)
Q Consensus 297 ~~ 298 (676)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 228
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=125.83 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+++++++|+++|+.||.+ +|.|+.++ +++++|||||+|.+.++|++||+ +|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999955 99999997 89999999999999999999996 79999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 229
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=127.39 Aligned_cols=81 Identities=12% Similarity=0.274 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..++++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..|+.. +..|+|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~---~~~i~Gr~ 82 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADV---PVYIAGQQ 82 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS---CCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC---CceECCEE
Confidence 345689999999999999999999999999999987643 799999999999999999988711 35699999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.|+.++.
T Consensus 83 l~V~~a~~~~ 92 (104)
T 1wex_A 83 AFFNYSTSKR 92 (104)
T ss_dssp CEEEECSSSS
T ss_pred EEEEEccCcc
Confidence 9999998754
No 230
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.4e-15 Score=127.35 Aligned_cols=84 Identities=25% Similarity=0.521 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--------
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-------- 283 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~-------- 283 (676)
.....++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|||..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred CCeeEEEEEecCC
Q 005812 284 GKRPIAVDWAVPK 296 (676)
Q Consensus 284 ~g~~i~v~~a~~~ 296 (676)
.+++|.|.|+.|+
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999764
No 231
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=5.7e-16 Score=128.57 Aligned_cols=80 Identities=31% Similarity=0.530 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.+ |.+|+..|| |..++|+.|.|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~-----g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD-----NTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC-----SSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC-----CCEECCeEEEEE
Confidence 58999999999999999999999999999999999888999999999999999 999999999 999999999999
Q ss_pred EccCch
Q 005812 506 KALDKK 511 (676)
Q Consensus 506 ~a~~k~ 511 (676)
+|.++.
T Consensus 76 ~a~~~~ 81 (90)
T 2ki2_A 76 EANPKK 81 (90)
T ss_dssp EC----
T ss_pred EcCCCC
Confidence 988754
No 232
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=4.5e-15 Score=131.23 Aligned_cols=80 Identities=20% Similarity=0.463 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+ .|| +..|+|+.|.|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~l~V 109 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD-----ETVFRGRTIKV 109 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC-----CCeECCeEEEE
Confidence 589999999999999999999999999999999999889999999999999999999999 899 99999999999
Q ss_pred EEccCc
Q 005812 505 LKALDK 510 (676)
Q Consensus 505 ~~a~~k 510 (676)
.++.+.
T Consensus 110 ~~a~~~ 115 (124)
T 2jwn_A 110 LPKRTN 115 (124)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998754
No 233
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=8.8e-16 Score=164.77 Aligned_cols=83 Identities=17% Similarity=0.413 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|| |..|+|+.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-----g~~i~gr~i~ 175 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD-----GKKIDGRRVL 175 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC-----CCEECCEEEE
Confidence 35799999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEccCch
Q 005812 504 VLKALDKK 511 (676)
Q Consensus 504 v~~a~~k~ 511 (676)
|.++.++.
T Consensus 176 V~~a~~~~ 183 (437)
T 3pgw_S 176 VDVERGRT 183 (437)
T ss_pred EEEeCCCC
Confidence 99998754
No 234
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-15 Score=130.65 Aligned_cols=81 Identities=26% Similarity=0.397 Sum_probs=77.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.|+.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999988999999999999999999999 8999999999999999876
Q ss_pred CC
Q 005812 296 KN 297 (676)
Q Consensus 296 ~~ 297 (676)
+.
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 235
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=136.16 Aligned_cols=84 Identities=20% Similarity=0.401 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEE--EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc----eeCCe
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ----KFGKR 286 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~----~~~g~ 286 (676)
....++|||+|||+++++++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred eEEEEEecCCC
Q 005812 287 PIAVDWAVPKN 297 (676)
Q Consensus 287 ~i~v~~a~~~~ 297 (676)
.|.|.|+.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997754
No 236
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=125.69 Aligned_cols=83 Identities=22% Similarity=0.415 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||.++++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4456789999999999999999999999999999999764 4588999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 997764
No 237
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.5e-15 Score=128.96 Aligned_cols=82 Identities=18% Similarity=0.369 Sum_probs=78.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999988999999999999999999999997 99999999999999987
Q ss_pred CCC
Q 005812 296 KNI 298 (676)
Q Consensus 296 ~~~ 298 (676)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
No 238
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-15 Score=121.97 Aligned_cols=77 Identities=25% Similarity=0.439 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~ 505 (676)
++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..++ ..++|++|.|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~------~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR------HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT------CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC------CccCCEEEEEE
Confidence 479999999999999999999999999999999998889999999999999999999999886 78999999999
Q ss_pred Ecc
Q 005812 506 KAL 508 (676)
Q Consensus 506 ~a~ 508 (676)
+|.
T Consensus 75 ~a~ 77 (77)
T 1uaw_A 75 VAF 77 (77)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 239
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=9e-15 Score=124.11 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc--eeCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ--KFGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~ 289 (676)
...+.++|||+|||+.+++++|+++|++||.|.+|.+++ .+|||||+|.+.++|.+|++.|++. .+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345678999999999999999999999999999999886 3699999999999999999988654 58999999
Q ss_pred EEEecCCCC
Q 005812 290 VDWAVPKNI 298 (676)
Q Consensus 290 v~~a~~~~~ 298 (676)
|.|+.++..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999977653
No 240
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.7e-15 Score=126.81 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~i~ 289 (676)
...+.++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3446789999999999999999999999999999999874 69999999999999999998874 679999999
Q ss_pred EEEecCCCC
Q 005812 290 VDWAVPKNI 298 (676)
Q Consensus 290 v~~a~~~~~ 298 (676)
|.|+.++..
T Consensus 101 V~~a~~k~~ 109 (119)
T 2ad9_A 101 IQFSNHKEL 109 (119)
T ss_dssp EEECSSSSC
T ss_pred EEEccCCCC
Confidence 999987654
No 241
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9e-15 Score=124.16 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 82 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-----KREIEGRA 82 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTS-----SEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhC-----CCEeCCeE
Confidence 3356899999999999999999999999987 45555 678899999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 83 l~v~~a~~~~ 92 (101)
T 2fc9_A 83 IRLELQGPRG 92 (101)
T ss_dssp EEEEECSSCC
T ss_pred EEEEEcCCCC
Confidence 9999998763
No 242
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=6.2e-15 Score=130.32 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=77.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~ 295 (676)
.++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|+ .|+|..|.|+.|.|.|+.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999999889999999999999999999999 7999999999999999876
Q ss_pred CC
Q 005812 296 KN 297 (676)
Q Consensus 296 ~~ 297 (676)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 243
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=125.06 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC----
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG---- 499 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g---- 499 (676)
..++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|++.|| +..|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~~~ 81 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD-----NTKFRSHEGE 81 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSS-----SEEEECTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHC-----cCCccCCcCc
Confidence 4689999999999999999999999999999988755 899999999999999999999 999999
Q ss_pred -cEEEEEEccCch
Q 005812 500 -RQLTVLKALDKK 511 (676)
Q Consensus 500 -r~l~v~~a~~k~ 511 (676)
+.|.|.++.++.
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 999999998864
No 244
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=9.9e-15 Score=122.72 Aligned_cols=77 Identities=19% Similarity=0.434 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 421 EDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~-~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
...++++|||+|||+ .+++++|+++|+.||.|..+.+ ++|||||+|.+.++|.+|+..|| |..++|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g 84 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXES-----QEMNFG 84 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHT-----TSEETT
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcC-----CCEECC
Confidence 445678999999998 9999999999999999999987 27899999999999999999999 999999
Q ss_pred cEEEEEEccCc
Q 005812 500 RQLTVLKALDK 510 (676)
Q Consensus 500 r~l~v~~a~~k 510 (676)
+.|.|.++.++
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999998765
No 245
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4e-15 Score=129.31 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCce-EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV-WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.....++|||+|||+++++++|+++|+.||.| ..|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999998 899999999999999999999997 999999999999
Q ss_pred EEecCCC
Q 005812 291 DWAVPKN 297 (676)
Q Consensus 291 ~~a~~~~ 297 (676)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 246
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=132.64 Aligned_cols=82 Identities=30% Similarity=0.446 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ee
Q 005812 292 WA 293 (676)
Q Consensus 292 ~a 293 (676)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 247
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=5.4e-15 Score=126.83 Aligned_cols=78 Identities=22% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
..++|||+|||+++++++|+++|++|| .|..+.++.+ .++|||||+|.+.++|.+|+..|| |..|+|+.|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~ln-----g~~l~Gr~i 97 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLN-----NIEFRGSVI 97 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTT-----TEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcC-----CCEECCeEE
Confidence 357999999999999999999999999 8999987532 479999999999999999999999 999999999
Q ss_pred EEEEccCc
Q 005812 503 TVLKALDK 510 (676)
Q Consensus 503 ~v~~a~~k 510 (676)
.|.++..+
T Consensus 98 ~V~~a~~~ 105 (111)
T 2jvr_A 98 TVERDDNP 105 (111)
T ss_dssp EEEESCC-
T ss_pred EEEECCCC
Confidence 99998754
No 248
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=6.9e-15 Score=129.55 Aligned_cols=84 Identities=15% Similarity=0.330 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 287 (676)
...+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34557899999999999999876 6999999999998864 5778999999999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 005812 288 IAVDWAVPKNI 298 (676)
Q Consensus 288 i~v~~a~~~~~ 298 (676)
|.|.|+.++..
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999987643
No 249
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.8e-15 Score=119.62 Aligned_cols=76 Identities=25% Similarity=0.443 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc-CCCCCCCeeecCc
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS-KTTSGLGIFLKGR 500 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l-~~~~~~g~~l~gr 500 (676)
..+.++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..| + +..++|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~-----~~~~~g~ 77 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFN-----KLIVNGR 77 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTT-----TCEETTE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcC-----CeeECCC
Confidence 345689999999999999999999999999999988753 799999999999999999999 8 9999999
Q ss_pred EEEEEEcc
Q 005812 501 QLTVLKAL 508 (676)
Q Consensus 501 ~l~v~~a~ 508 (676)
+|.|.||+
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999974
No 250
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=9e-16 Score=130.40 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+.++|||+|||+.+++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ || +..|.|+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~-----g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT-----GLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG-----GCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC-----CcEECCcEE
Confidence 34689999999999999999999999999988 567777788999999999999999999998 99 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 999998764
No 251
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.3e-15 Score=123.35 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec--
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-- 498 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~-- 498 (676)
...+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|| +..|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~-----g~~~~~~ 81 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMR-----GFPLGGP 81 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHT-----TCBCSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHC-----CCEeCCC
Confidence 3345689999999999999999999999999999987643 7899999999999999999999 99999
Q ss_pred CcEEEEEEccCch
Q 005812 499 GRQLTVLKALDKK 511 (676)
Q Consensus 499 gr~l~v~~a~~k~ 511 (676)
|++|.|.++.++.
T Consensus 82 g~~l~V~~a~~~~ 94 (97)
T 1why_A 82 DRRLRVDFAKSGP 94 (97)
T ss_dssp SCBCEEEECCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998763
No 252
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=122.04 Aligned_cols=83 Identities=24% Similarity=0.513 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|++|+..||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567999999999999999999999999977 56666 578899999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987643
No 253
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=130.17 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCc---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGE---VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~---v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~ 498 (676)
....++|||+|||+++++++|+++|+.||. |..|.|+.+.. |+++|||||+|.+.++|.+|+. ++ +..|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~-----~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KH-----RMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TT-----TCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hC-----cceeC
Confidence 345689999999999999999999999998 89999999876 9999999999999999999998 99 99999
Q ss_pred CcEEEEEEccCchh
Q 005812 499 GRQLTVLKALDKKL 512 (676)
Q Consensus 499 gr~l~v~~a~~k~~ 512 (676)
||.|.|.++.+++.
T Consensus 81 gr~i~V~~a~~~~~ 94 (107)
T 2lmi_A 81 QRYVEVYEINNEDV 94 (107)
T ss_dssp SSCCCCEECCHHHH
T ss_pred CeEEEEEECCHHHH
Confidence 99999999876553
No 254
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=123.54 Aligned_cols=82 Identities=28% Similarity=0.299 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|+.|+ .|.++.+..++.++|||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 83 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME-----DGEIDGNK 83 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCeECCeE
Confidence 44568999999999999999999999874 56788888889999999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998764
No 255
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.6e-15 Score=121.39 Aligned_cols=76 Identities=25% Similarity=0.391 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+.++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|| +..|+|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLH-----HYKLHGVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHT-----TCBCSSCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhc-----CCccCCcEE
Confidence 346899999999999999999999999999999876 6899999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 73 ~v~~a~~~~ 81 (90)
T 2dnq_A 73 NVEASKNKS 81 (90)
T ss_dssp EEECSSCCC
T ss_pred EEEECCCCC
Confidence 999998764
No 256
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=1.8e-15 Score=120.78 Aligned_cols=75 Identities=25% Similarity=0.346 Sum_probs=71.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEEEE
Q 005812 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (676)
Q Consensus 427 ~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v~~ 506 (676)
+|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++. + +..++|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~-----~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-K-----YHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-S-----SCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-C-----CCeECCEEEEEEE
Confidence 589999999999999999999999999999999988899999999999999999999985 7 8999999999987
Q ss_pred c
Q 005812 507 A 507 (676)
Q Consensus 507 a 507 (676)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 257
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=119.51 Aligned_cols=79 Identities=30% Similarity=0.382 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45567899999999999999999999999999999997 4799999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 258
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=8e-15 Score=128.09 Aligned_cols=82 Identities=20% Similarity=0.354 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCc---eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGL---VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
....++|||+|||+++++++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|++|++ +|+..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 445789999999999999999999999999 89999999875 9999999999999999999999 899999999999
Q ss_pred EEEecCC
Q 005812 290 VDWAVPK 296 (676)
Q Consensus 290 v~~a~~~ 296 (676)
|.++.++
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 259
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=5e-15 Score=132.00 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCc---eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL---VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i 288 (676)
.....++|||+|||+++|+++|+++|+.||. |.+|.|+.++. |+++|||||+|.+.++|++|++ ||+..|.|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 88999999976 9999999999999999999999 99999999999
Q ss_pred EEEEecCC
Q 005812 289 AVDWAVPK 296 (676)
Q Consensus 289 ~v~~a~~~ 296 (676)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 260
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=122.43 Aligned_cols=80 Identities=26% Similarity=0.407 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
....++|||+|||+.+++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 85 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQ-----GLRLGTDT 85 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHT-----TCCSSSSC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhC-----CCEECCcE
Confidence 34468999999999999999999999999997 666654 578999999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 86 l~V~~a~~~~ 95 (97)
T 2e5j_A 86 LRVALARQQR 95 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 261
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=8.7e-15 Score=123.73 Aligned_cols=79 Identities=28% Similarity=0.413 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.|+ +..|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~-----g~~~~g~~ 80 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELD-----NMPLRGKQ 80 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHT-----TCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhC-----CCEeCCce
Confidence 345689999999999999999999999999999988743 7899999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 262
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5e-15 Score=129.57 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCce----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEV----VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v----~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
..++|||+|||+++|+++|+++|+.||.| ..|.|+.+ .+|+++|||||+|.+.++|.+|+.. | +..|+|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~-----~~~l~g 94 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-H-----KDLLGK 94 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-T-----TEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-C-----CCeeCC
Confidence 35799999999999999999999999875 68989888 5899999999999999999999986 8 899999
Q ss_pred cEEEEEEccCchhh
Q 005812 500 RQLTVLKALDKKLA 513 (676)
Q Consensus 500 r~l~v~~a~~k~~~ 513 (676)
|.|.|..+.+++..
T Consensus 95 R~i~V~~a~~~e~~ 108 (123)
T 2dha_A 95 RYIELFRSTAAEVQ 108 (123)
T ss_dssp CEECCEEECHHHHH
T ss_pred eEEEEEECCHHHHH
Confidence 99999998765433
No 263
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=118.68 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeeEE
Q 005812 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF-NGQKFGKRPIA 289 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~i~ 289 (676)
......++|||+|||..+++++|+++|++||.|..|.+++ ++|||||+|.+.++|.+|++.| ++..+.|+.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 3445678999999999999999999999999999999987 4799999999999999999998 99999999999
Q ss_pred EEEec
Q 005812 290 VDWAV 294 (676)
Q Consensus 290 v~~a~ 294 (676)
|.|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99973
No 264
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=3.7e-15 Score=120.93 Aligned_cols=72 Identities=26% Similarity=0.517 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCC------CHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe-eEE
Q 005812 217 WKLIIRNIPFKA------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR-PIA 289 (676)
Q Consensus 217 ~~v~V~nLp~~~------~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~i~ 289 (676)
++|||+|||..+ ++++|+++|++||.|.+|.+++ .+|+++|||||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 7799999999999999999883 5789999999999999999999999999999999 887
Q ss_pred E
Q 005812 290 V 290 (676)
Q Consensus 290 v 290 (676)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 265
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=7.3e-15 Score=125.52 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeeEE
Q 005812 213 KTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPIA 289 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~-~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~i~ 289 (676)
..+.++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|.+.++|..|++.|+ +..|.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446789999999998 99999999999999999999975 57999999999999999999886 4569999999
Q ss_pred EEEecCCCC
Q 005812 290 VDWAVPKNI 298 (676)
Q Consensus 290 v~~a~~~~~ 298 (676)
|.|+.++..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976653
No 266
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=2.9e-15 Score=121.60 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=67.0
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 426 NTIFICNLPFDL------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 426 ~~l~V~nLp~~~------teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
++|||+|||+.+ ++++|+++|++||.|..|.++ ..+|.++|||||+|.+.++|.+|+..|| |..|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~ln-----g~~~~g 74 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD-----GYKLDK 74 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSS-----SCCCSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhc-----CcccCC
Confidence 689999999999 779999999999999999877 3578999999999999999999999999 999999
Q ss_pred c-EEEE
Q 005812 500 R-QLTV 504 (676)
Q Consensus 500 r-~l~v 504 (676)
+ +|.|
T Consensus 75 ~~~l~V 80 (81)
T 2krb_A 75 QHTFRV 80 (81)
T ss_dssp SSCCCC
T ss_pred ceeEEe
Confidence 9 8876
No 267
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.55 E-value=7.3e-15 Score=125.98 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
....++|||+|||+++++++|+++|+.|| .|..+.++.+ .++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44578999999999999999999999999 8999998643 378999999999999999999999999999999999
Q ss_pred EecCC
Q 005812 292 WAVPK 296 (676)
Q Consensus 292 ~a~~~ 296 (676)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98654
No 268
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=122.65 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|++||.|..|.+++ .+|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 455678999999999999999999999999999999986 46899999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987653
No 269
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.5e-15 Score=124.65 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
.+++|||+|||..+++++|+++|+.||.|..++++ .++|||||+|.+.++|.+|+..|| |..|+|+.|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~ 94 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALA-----NFPFQGRNLR 94 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHT-----TCEETTEECC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhC-----CCeECCeEEE
Confidence 46899999999999999999999999999999886 358999999999999999999999 9999999999
Q ss_pred EEEccCc
Q 005812 504 VLKALDK 510 (676)
Q Consensus 504 v~~a~~k 510 (676)
|.|+.++
T Consensus 95 V~~a~~~ 101 (101)
T 2la4_A 95 TGWGKER 101 (101)
T ss_dssp CCBCCCC
T ss_pred EEeccCC
Confidence 9998764
No 270
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=5.6e-15 Score=124.44 Aligned_cols=83 Identities=25% Similarity=0.416 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee
Q 005812 422 DELQNTIFICNLPFDLDNEEVK----QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l 497 (676)
..++++|||+|||..+++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|.+|+..|| |..|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~ 76 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQ-----GFPF 76 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHT-----TCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhC-----CCEE
Confidence 3456899999999999999999 9999999999998763 46778999999999999999999999 9999
Q ss_pred cCcEEEEEEccCchh
Q 005812 498 KGRQLTVLKALDKKL 512 (676)
Q Consensus 498 ~gr~l~v~~a~~k~~ 512 (676)
+|+.|.|.++.++..
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 77 YDKPMRIQYAKTDSD 91 (97)
T ss_dssp TTEECEEEECSSCCT
T ss_pred CCcEEEEEEccCCCc
Confidence 999999999988654
No 271
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=122.01 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||.++++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 455678999999999999999999999874 57778887889999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9987653
No 272
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.55 E-value=1.1e-14 Score=125.00 Aligned_cols=78 Identities=21% Similarity=0.405 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
.....++|||+|||+.+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~-----g~~~~g~ 93 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVH-----GKSFANQ 93 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcC-----CCEECCe
Confidence 44556899999999999999999999999999999886 7899999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 94 ~l~V~~a~~~~ 104 (108)
T 2jvo_A 94 PLEVVYSKLPA 104 (108)
T ss_dssp ECEEESCSCCC
T ss_pred EEEEEEecCCC
Confidence 99999988754
No 273
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=123.50 Aligned_cols=79 Identities=23% Similarity=0.374 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-----e
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK-----R 286 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-----~ 286 (676)
.....++|||+|||+++++++|+++|+.||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 4456789999999999999999999999999999999875 899999999999999999999999999 9
Q ss_pred eEEEEEecCCC
Q 005812 287 PIAVDWAVPKN 297 (676)
Q Consensus 287 ~i~v~~a~~~~ 297 (676)
.|.|.++.++.
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 99999998764
No 274
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=125.04 Aligned_cols=79 Identities=22% Similarity=0.400 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
....++|||+|||..+++++|+++|+.||.|..|.++.+ +|||||+|.+.++|.+|+..|+ +..|+|+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 90 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVN-----GTTIEGHV 90 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcC-----CCEECCcE
Confidence 344689999999999999999999999999999988765 7899999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.|+.++.
T Consensus 91 l~v~~a~~~~ 100 (109)
T 1x4g_A 91 VKCYWGKESP 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999998764
No 275
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=121.33 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC--CeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG--KRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~i~ 289 (676)
.....++|||+|||..+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.||+..+. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456689999999999999999999999999999999863 689999999999999999999999999 99999
Q ss_pred EEEecCCC
Q 005812 290 VDWAVPKN 297 (676)
Q Consensus 290 v~~a~~~~ 297 (676)
|.|+.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 276
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4e-15 Score=131.46 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456899999999999999999999999999886666666789999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 005812 293 AVPKN 297 (676)
Q Consensus 293 a~~~~ 297 (676)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97653
No 277
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.9e-14 Score=119.72 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhC--CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAF--GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~--G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
..+.++|||+|||+.+++++|+++|++| |.|..|.++ +|||||+|.+.++|.+|+..|| +..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~-----g~~~~g 78 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALN-----GKVLDG 78 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHS-----SEEETT
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhC-----CCEeCC
Confidence 3456899999999999999999999999 999998753 6799999999999999999999 999999
Q ss_pred cEEEEEEccCch
Q 005812 500 RQLTVLKALDKK 511 (676)
Q Consensus 500 r~l~v~~a~~k~ 511 (676)
+.|.|.++.++.
T Consensus 79 ~~l~v~~a~~~~ 90 (99)
T 2cpd_A 79 SPIEVTLAKPVD 90 (99)
T ss_dssp EEEEEECCCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999998764
No 278
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=118.95 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLD-----NTEFQGKR 73 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHT-----TEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhC-----CCeeCCcE
Confidence 3456899999999999999999999999999999876 4499999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 74 l~V~~a~~~~ 83 (92)
T 2dgt_A 74 MHVQLSTSRL 83 (92)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999998764
No 279
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=124.61 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
...+|||+|||+++++++|+++|+.| .|.+|.|+.++. |+++|||||+|.+.++|++|| .+|+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 899999999875 899999999999999999999 589999999999999886
Q ss_pred CCC
Q 005812 295 PKN 297 (676)
Q Consensus 295 ~~~ 297 (676)
++.
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 280
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=8.7e-15 Score=123.24 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 287 (676)
...+.++|||+|||.++++++|+ ++|++||.|..|.++. +|.++|||||+|.+.++|..|+..|||..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999999874 5668899999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 005812 288 IAVDWAVPKN 297 (676)
Q Consensus 288 i~v~~a~~~~ 297 (676)
|.|.|+.++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999997754
No 281
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=4.9e-15 Score=126.06 Aligned_cols=81 Identities=25% Similarity=0.432 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
..++|||+|||+.+++++|+++|+.||.|..|.++.+. ++.++|||||+|.+.++|.+|+. + +..|+|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~-----~~~~~g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--S-----QINFHGKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--C-----CCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--C-----CCeECCEEEE
Confidence 35899999999999999999999999999999999997 89999999999999999999998 8 8999999999
Q ss_pred EEEccCchh
Q 005812 504 VLKALDKKL 512 (676)
Q Consensus 504 v~~a~~k~~ 512 (676)
|.++.++..
T Consensus 80 v~~a~~~~~ 88 (102)
T 2xs2_A 80 LGPAIRKQN 88 (102)
T ss_dssp EEEEEECC-
T ss_pred EEECCcCcc
Confidence 999987653
No 282
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=2.5e-15 Score=134.39 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=74.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEec--CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcc
Q 005812 173 DASAVLYTTVKSACASVALLHQKEIKGGTVWARQ--LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH 250 (676)
Q Consensus 173 g~afV~F~~~~~A~~A~~~l~~~~~~~~~i~v~~--~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~ 250 (676)
++|+.+|..++.+..+...+... ..|....... ..........++|||+|||+++++++|+++|+.|| |.+|.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 45777787777777776654332 2222111100 01112344568999999999999999999999999 67999999
Q ss_pred cCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 005812 251 NTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (676)
Q Consensus 251 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~ 297 (676)
++. ++++|||||+|.+.++|++|| .+|+..|.|+.|.|.++.+..
T Consensus 80 d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 80 GPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp SSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred CCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 975 999999999999999999999 689999999999999987654
No 283
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=2.7e-15 Score=119.78 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 218 ~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
+|||+|||+++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988999999999999999999999995 999999999999875
No 284
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.1e-14 Score=123.61 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||.++++++|+++|+.||.|.+|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999984 679999999999999999999999999999999999
Q ss_pred ecCC
Q 005812 293 AVPK 296 (676)
Q Consensus 293 a~~~ 296 (676)
+.++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8763
No 285
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=1e-14 Score=142.85 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCC--ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..++|||+|||+.+|+++|+++|+.|| .|..|+|++++.+++++|||||+|.+.++|.+||..|| +..|.|+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln-----g~~~~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-----KRELHGQN 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST-----TSCBTTBC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCeECCEE
Confidence 457999999999999999999999999 99999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccCchh
Q 005812 502 LTVLKALDKKL 512 (676)
Q Consensus 502 l~v~~a~~k~~ 512 (676)
|.|.+|.+...
T Consensus 142 l~V~~a~~~~~ 152 (229)
T 3q2s_C 142 PVVTPVNKQFL 152 (229)
T ss_dssp CEEEECCHHHH
T ss_pred eEEEECCCCcc
Confidence 99999986543
No 286
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=7e-14 Score=116.39 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||.++++++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 456678999999999999999999999999999999975 399999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987653
No 287
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=122.92 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||..+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 446789999999999999999999999999999999874 68999999999999999999999999999999999
Q ss_pred ecCCCC
Q 005812 293 AVPKNI 298 (676)
Q Consensus 293 a~~~~~ 298 (676)
+.++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987653
No 288
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.3e-16 Score=134.97 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 494 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g 494 (676)
.+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|.+|+..|| +
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g 79 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD-----G 79 (116)
Confidence 34689999999999999999999999999998 8899988889999999999999999999999999 9
Q ss_pred eeecCcEEEEEEccCch
Q 005812 495 IFLKGRQLTVLKALDKK 511 (676)
Q Consensus 495 ~~l~gr~l~v~~a~~k~ 511 (676)
..|.|++|.|.++.++.
T Consensus 80 ~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 80 KEFSGNPIKVSFATRRA 96 (116)
Confidence 99999999999998764
No 289
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=6e-15 Score=126.58 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=77.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCc---eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL---VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i 288 (676)
.....++|||+|||+++++++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++|+. +++..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4456789999999999999999999999998 89999999986 9999999999999999999999 89999999999
Q ss_pred EEEEecCC
Q 005812 289 AVDWAVPK 296 (676)
Q Consensus 289 ~v~~a~~~ 296 (676)
.|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998764
No 290
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=121.30 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+ +..|+|+.|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 83 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ-----GAEIDGRSV 83 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTT-----EEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCeEE
Confidence 356899999999999999999999999988766 2467889999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 999998764
No 291
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=3e-14 Score=121.33 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~ 503 (676)
+.++|||+|||+.+++++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..|| +..|.|+.|.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 76 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMN-----GKDLEGENIE 76 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHC-----CCccCCCEEE
Confidence 45899999999999999999999999999999875 5699999999999999999999 9999999999
Q ss_pred EEEccCch
Q 005812 504 VLKALDKK 511 (676)
Q Consensus 504 v~~a~~k~ 511 (676)
|.++.++.
T Consensus 77 v~~a~~~~ 84 (103)
T 2dgu_A 77 IVFAKPPD 84 (103)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCc
Confidence 99998765
No 292
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=124.44 Aligned_cols=76 Identities=26% Similarity=0.404 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
..++|||+|||+.+++++|+++|++||.|..|.|+. ++|||||+|.+.++|++|++.|||..|.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999999875 66899999999999999999999999999999999996
Q ss_pred CC
Q 005812 295 PK 296 (676)
Q Consensus 295 ~~ 296 (676)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 293
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.9e-14 Score=118.21 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+.+++++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..|| +..|+|+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 72 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLN-----GKEVKGKR 72 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhC-----CCEECCcE
Confidence 3456899999999999999999999999999999886 3499999999999999999999 99999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 73 l~v~~a~~~~ 82 (90)
T 2dnp_A 73 INVELSTKGQ 82 (90)
T ss_dssp CEEEESCCCC
T ss_pred EEEEECCCCC
Confidence 9999988753
No 294
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=120.83 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||+.+++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 666653 4789999999999999999999999999999999999
Q ss_pred ecCCC
Q 005812 293 AVPKN 297 (676)
Q Consensus 293 a~~~~ 297 (676)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 295
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.52 E-value=7.9e-15 Score=128.53 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCcee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVV--SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~--~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...++|||+|||+++|+++|+++|+.| .|. .|+|+.++. |+++|||||+|.+.++|.+|+.. + +..|+||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~-----~~~l~gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-H-----KERIGHR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-T-----TCCBTTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-C-----CCEECCE
Confidence 345799999999999999999999999 566 899998876 99999999999999999999974 7 7999999
Q ss_pred EEEEEEccCc
Q 005812 501 QLTVLKALDK 510 (676)
Q Consensus 501 ~l~v~~a~~k 510 (676)
.|.|.++.++
T Consensus 112 ~I~V~~a~~~ 121 (126)
T 2hgm_A 112 YIEVFKSSQE 121 (126)
T ss_dssp CCCCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999998654
No 296
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.52 E-value=5.3e-14 Score=119.80 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+++++++|+++|+.||.|..|.+++ +||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 445678999999999999999999999999999999874 589999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9987654
No 297
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.3e-15 Score=127.97 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||..+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44678999999999999999999999999984332222222677999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 005812 293 AVPKNI 298 (676)
Q Consensus 293 a~~~~~ 298 (676)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987653
No 298
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=5.4e-14 Score=118.19 Aligned_cols=77 Identities=19% Similarity=0.384 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 212 SKTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~-~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.....++|||+|||. ++++++|+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 455789999999998 99999999999999999999983 589999999999999999999999999999999
Q ss_pred EEecCC
Q 005812 291 DWAVPK 296 (676)
Q Consensus 291 ~~a~~~ 296 (676)
.|+.++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998764
No 299
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=5.6e-15 Score=134.10 Aligned_cols=85 Identities=22% Similarity=0.308 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCee
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV--P---VLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~--i---~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~ 496 (676)
..++++|||+|||+.+++++|+++|+.||.|..+. + +....++.++|||||+|.+.++|.+|+..|| |..
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln-----g~~ 116 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN-----GYV 116 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT-----TBE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC-----CCE
Confidence 44568999999999999999999999999987641 1 1112368899999999999999999999999 999
Q ss_pred ecCcEEEEEEccCch
Q 005812 497 LKGRQLTVLKALDKK 511 (676)
Q Consensus 497 l~gr~l~v~~a~~k~ 511 (676)
|.|+.|.|.+|.+..
T Consensus 117 ~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 117 LFGKPMVVQFARSAR 131 (143)
T ss_dssp ETTEECEEEECCCSC
T ss_pred eCCcEEEEEECCCCC
Confidence 999999999998754
No 300
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.52 E-value=3.4e-14 Score=121.92 Aligned_cols=78 Identities=28% Similarity=0.569 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45667899999999999999999999999999999987 5899999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.++.
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 997754
No 301
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.8e-14 Score=116.33 Aligned_cols=78 Identities=24% Similarity=0.479 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|++|++.|||..+.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 455678999999999999999999999999999999975 389999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.+..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997764
No 302
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.7e-14 Score=122.07 Aligned_cols=80 Identities=20% Similarity=0.355 Sum_probs=72.5
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HcCCCC
Q 005812 426 NTIFICNL----PFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKT----VEA----ATAAVS--ASKTTS 491 (676)
Q Consensus 426 ~~l~V~nL----p~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t----~~~----A~~Al~--~l~~~~ 491 (676)
..|||+|| |+.+++++|+++|+.||.|.+|.++.|+.+|+++|||||+|.+ +++ |.+|+. .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln--- 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS--- 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT---
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc---
Confidence 58999999 9999999999999999999999999999999999999999996 333 889988 789
Q ss_pred CCCeeecCcEEEEEEccCc
Q 005812 492 GLGIFLKGRQLTVLKALDK 510 (676)
Q Consensus 492 ~~g~~l~gr~l~v~~a~~k 510 (676)
|..|+||+|.|.+-...
T Consensus 80 --g~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 80 --GCFIMGFKFEVILNKHS 96 (136)
T ss_dssp --CEEETTEEEEEEECCTT
T ss_pred --CCeecCcEEEEEECccc
Confidence 99999999999986553
No 303
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=2.6e-15 Score=127.54 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||+++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ |||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999988 667777788899999999999999999999 999999999999999
Q ss_pred ecCCC
Q 005812 293 AVPKN 297 (676)
Q Consensus 293 a~~~~ 297 (676)
+.++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98764
No 304
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=1.5e-14 Score=141.66 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--ceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
..++|||+|||+.+++++|+++|+.|| .|.+|.|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 005812 293 AVPK 296 (676)
Q Consensus 293 a~~~ 296 (676)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 305
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=3.1e-14 Score=133.60 Aligned_cols=85 Identities=21% Similarity=0.365 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...++++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~ln-----g~~l~Gr 157 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK-----GVPLDGR 157 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHST-----TCBCSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhC-----CCEECCE
Confidence 34557899999999999999999999999999999999887 89999999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.+|....
T Consensus 158 ~l~V~~a~~~~ 168 (177)
T 2f3j_A 158 PMDIQLVASQI 168 (177)
T ss_dssp BCEEEEESSGG
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 306
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=120.05 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEE-EeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV-PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~-i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
..++|||+|||+.+++++|+++|+.||.|..|+ ++.+.. .|.|||+|.+.++|.+|+..|| |..|+|++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~----~~~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l 84 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE----TAVVNVTYSSKDQARQALDKLN-----GFQLENFTL 84 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS----SEEEEEEESSHHHHHHHHHHHT-----TCBCSSCBC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC----CCEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 357999999999999999999999999999994 776654 3449999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.+++
T Consensus 85 ~V~~a~~~~ 93 (96)
T 2e44_A 85 KVAYIPDEM 93 (96)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCccc
Confidence 999998874
No 307
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=4.1e-15 Score=132.96 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
...++|||+|||+++|+++|+++|++|| |..|.|++++. ++++|||||+|.+.++|.+|+ .+| +..|+||.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~-----g~~l~gR~i 115 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKD-----RANMQHRYI 115 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCC-----SCSSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhC-----CCEECCEEE
Confidence 3457999999999999999999999999 67999999875 999999999999999999999 889 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.+++
T Consensus 116 ~V~~a~~~~ 124 (139)
T 2hgn_A 116 ELFLNSTTG 124 (139)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 999987654
No 308
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=124.53 Aligned_cols=75 Identities=20% Similarity=0.095 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|+++|++||.|..|.++. ++|||||+|.+.++|.+|+..|| |..|+|++|.|
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V 78 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLA-----YSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHT-----TCBSSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhC-----CCEECCeEEEE
Confidence 57999999999999999999999999999997753 57899999999999999999999 99999999999
Q ss_pred EEccCc
Q 005812 505 LKALDK 510 (676)
Q Consensus 505 ~~a~~k 510 (676)
.|+...
T Consensus 79 ~~a~~~ 84 (111)
T 1whx_A 79 EWAPIG 84 (111)
T ss_dssp EEEETT
T ss_pred EECCCC
Confidence 998764
No 309
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=2.5e-14 Score=120.13 Aligned_cols=81 Identities=23% Similarity=0.445 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988765 2367899999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997754
No 310
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=7.1e-14 Score=122.26 Aligned_cols=80 Identities=16% Similarity=0.365 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeE-EEEEecCHHHHHHHHHHhCCceeCC--eeEEE
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGF-AFVKFTCKRDAESAIQKFNGQKFGK--RPIAV 290 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v 290 (676)
..--.|||+||++.+|+++|+++|++||.|.+|+++.+ .+|| |||+|.+.++|..|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34467889999999999999999999999999998864 3577 9999999999999999999999987 99999
Q ss_pred EEecCCCC
Q 005812 291 DWAVPKNI 298 (676)
Q Consensus 291 ~~a~~~~~ 298 (676)
+|+++...
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99988754
No 311
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=5.6e-14 Score=121.25 Aligned_cols=75 Identities=28% Similarity=0.445 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 423 ELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 423 ~~~~~l~V~nLp~~-~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|+..|+ +..|+|+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 91 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGEN-----GRVLAGQT 91 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 34589999999999 999999999999999999987 47999999999999999999999 99999999
Q ss_pred EEEEEccCc
Q 005812 502 LTVLKALDK 510 (676)
Q Consensus 502 l~v~~a~~k 510 (676)
|.|.++.++
T Consensus 92 l~V~~a~~~ 100 (110)
T 1wf1_A 92 LDINMAGEP 100 (110)
T ss_dssp CCEEESCCC
T ss_pred EEEEECCCC
Confidence 999998754
No 312
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-15 Score=132.76 Aligned_cols=86 Identities=23% Similarity=0.443 Sum_probs=80.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEE--------EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--------VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 284 (676)
....++|||+|||..+++++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++|.+|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345689999999999999999999999999998 899999888999999999999999999999999999999
Q ss_pred CeeEEEEEecCCCC
Q 005812 285 KRPIAVDWAVPKNI 298 (676)
Q Consensus 285 g~~i~v~~a~~~~~ 298 (676)
|+.|.|.|+.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987654
No 313
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.1e-14 Score=120.53 Aligned_cols=77 Identities=19% Similarity=0.391 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 422 DELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 422 ~~~~~~l~V~nLp~-~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
..+.++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|| +..+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECES-----QEMNFGK 73 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHT-----CSSCBTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcC-----CCeeCCc
Confidence 34568999999998 99999999999999999999873 7899999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
+|.|.++.++.
T Consensus 74 ~l~V~~a~~~~ 84 (96)
T 2kvi_A 74 KLILEVSSSNA 84 (96)
T ss_dssp TBCEEEEECCC
T ss_pred EEEEEEcCcCC
Confidence 99999997754
No 314
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=119.58 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCc-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCC-eeecCcE
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG-IFLKGRQ 501 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~-v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g-~~l~gr~ 501 (676)
..++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..|| + ..|+|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~ 74 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLS-----GKVELHGKI 74 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHT-----TTCEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHcc-----CCeeECCEE
Confidence 4579999999999999999999999999 6665442 47899999999999999999999 9 9999999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.++.++.
T Consensus 75 l~v~~a~~~~ 84 (93)
T 2cqh_A 75 MEVDYSVSKK 84 (93)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998764
No 315
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.9e-14 Score=121.89 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=71.4
Q ss_pred cEEEEcCC----CCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecC----HHH----HHHHHH--HhCCce
Q 005812 217 WKLIIRNI----PFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC----KRD----AESAIQ--KFNGQK 282 (676)
Q Consensus 217 ~~v~V~nL----p~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~----A~~A~~--~l~~~~ 282 (676)
..|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 433 888988 789999
Q ss_pred eCCeeEEEEEec
Q 005812 283 FGKRPIAVDWAV 294 (676)
Q Consensus 283 ~~g~~i~v~~a~ 294 (676)
|.|+.|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999863
No 316
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=1.6e-14 Score=122.79 Aligned_cols=82 Identities=24% Similarity=0.384 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
...++|||+|||+++++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|++|+. ++..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356899999999999999999999999999999999998 89999999999999999999999 999999999999999
Q ss_pred cCCCC
Q 005812 294 VPKNI 298 (676)
Q Consensus 294 ~~~~~ 298 (676)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76643
No 317
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=117.92 Aligned_cols=80 Identities=23% Similarity=0.391 Sum_probs=71.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC-ceeCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG-QKFGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~i~ 289 (676)
.....++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 6655552 579999999999999999999999 999999999
Q ss_pred EEEecCCCC
Q 005812 290 VDWAVPKNI 298 (676)
Q Consensus 290 v~~a~~~~~ 298 (676)
|.|+.++..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999987643
No 318
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.2e-14 Score=120.23 Aligned_cols=81 Identities=15% Similarity=0.306 Sum_probs=72.0
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee-----C
Q 005812 212 SKTQKWKLII--RNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-----G 284 (676)
Q Consensus 212 ~~~~~~~v~V--~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~-----~ 284 (676)
...+.++||| +||++++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445688999 67999999999999999999999998875 368999999999999999999999988 6
Q ss_pred CeeEEEEEecCCCC
Q 005812 285 KRPIAVDWAVPKNI 298 (676)
Q Consensus 285 g~~i~v~~a~~~~~ 298 (676)
|++|.|.|+....+
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 89999999976544
No 319
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.5e-14 Score=118.52 Aligned_cols=78 Identities=19% Similarity=0.367 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 212 SKTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~-~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
...+.++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|..|+..|+|..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999984 589999999999999999999999999999999
Q ss_pred EEecCCC
Q 005812 291 DWAVPKN 297 (676)
Q Consensus 291 ~~a~~~~ 297 (676)
.|+.++.
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9997754
No 320
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=125.52 Aligned_cols=81 Identities=25% Similarity=0.396 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCce----EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLV----WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
....+|||+|||+++++++|+++|+.||.| ..|.|+.+. +|+++|||||+|.+.++|++|++. |+..|.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 356799999999999999999999999975 689999884 899999999999999999999996 99999999999
Q ss_pred EEEecCC
Q 005812 290 VDWAVPK 296 (676)
Q Consensus 290 v~~a~~~ 296 (676)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 321
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.6e-13 Score=115.90 Aligned_cols=78 Identities=28% Similarity=0.443 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccC--CceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPV--GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
.....++|||+|||+.+++++|+++|+.| |.|..|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44567899999999999999999999999 999998875 47999999999999999999999999999999
Q ss_pred EEEecCCC
Q 005812 290 VDWAVPKN 297 (676)
Q Consensus 290 v~~a~~~~ 297 (676)
|.|+.++.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 322
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=114.47 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=65.8
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHHHhC-CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee
Q 005812 424 LQNT-IFICNLPFDLDNEE----VKQRFSAF-GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (676)
Q Consensus 424 ~~~~-l~V~nLp~~~teed----l~~~F~~~-G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l 497 (676)
+..+ |||+|||+.+++++ |+++|++| |.|..| ++ |+|||.|.+.++|.+|++.|+ |..|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~-----G~~l 71 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRME-----NEDV 71 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHT-----TCCS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhc-----CCcc
Confidence 3455 99999999999988 55899999 599997 23 999999999999999999999 9999
Q ss_pred cCcEEEEEEccCchh
Q 005812 498 KGRQLTVLKALDKKL 512 (676)
Q Consensus 498 ~gr~l~v~~a~~k~~ 512 (676)
.||+|+|.+|..+..
T Consensus 72 ~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 72 FGNRIIVSFTPKNRE 86 (96)
T ss_dssp SSSCCEEESSCCSCC
T ss_pred CCceEEEEecCCCcc
Confidence 999999999987653
No 323
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.9e-14 Score=121.02 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=69.9
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee--
Q 005812 422 DELQNTIFI--CNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL-- 497 (676)
Q Consensus 422 ~~~~~~l~V--~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l-- 497 (676)
..++++||| +|||+.+++++|+++|++||.|..|.++. .+|||||+|.+.++|.+|+..|| |..|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~ln-----G~~~~~ 90 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN-----GKEVVD 90 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTT-----TCEEEC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC-----CCEEcc
Confidence 345689999 66999999999999999999999987652 37899999999999999999999 9988
Q ss_pred ---cCcEEEEEEccCch
Q 005812 498 ---KGRQLTVLKALDKK 511 (676)
Q Consensus 498 ---~gr~l~v~~a~~k~ 511 (676)
.|++|.|.++...+
T Consensus 91 ~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp TTSCEEECEEEEESCCC
T ss_pred ccCCCcEEEEEecccCc
Confidence 79999999987643
No 324
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.49 E-value=7.4e-14 Score=115.22 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=63.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE
Q 005812 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~ 501 (676)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+ ++.. .+.+.|+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~---~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGE---DLIIKGIS 75 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTC---EEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCC---CcccCCEE
Confidence 345689999999999999999999999999999988764 68999999999999984 4411 35567999
Q ss_pred EEEEEccCch
Q 005812 502 LTVLKALDKK 511 (676)
Q Consensus 502 l~v~~a~~k~ 511 (676)
|.|.+|.++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 325
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=6.7e-14 Score=131.29 Aligned_cols=85 Identities=22% Similarity=0.399 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997653
No 326
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=3.9e-14 Score=124.11 Aligned_cols=82 Identities=27% Similarity=0.419 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceE--EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
.....++|||+|||+.+++++|+++|+.| .|. +|+|+.++. |+++|||||+|.+.++|++|++. ++..|.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34457899999999999999999999999 566 899999986 99999999999999999999995 88999999999
Q ss_pred EEEecCC
Q 005812 290 VDWAVPK 296 (676)
Q Consensus 290 v~~a~~~ 296 (676)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 327
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=1.6e-13 Score=116.65 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHHhCCceeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHcCCCCCCCee
Q 005812 423 ELQNTIFICNLPF-----DLDNEEVKQRFSAFGEVVSFVPVLHQVT-KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (676)
Q Consensus 423 ~~~~~l~V~nLp~-----~~teedl~~~F~~~G~v~~v~i~~~~~~-~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~ 496 (676)
.++++|+|+||.. +-++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|+..|| |..
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln-----G~~ 80 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN-----GRY 80 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT-----TCE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC-----CCE
Confidence 3568999999963 2378999999999999999999988653 6789999999999999999999999 999
Q ss_pred ecCcEEEEEEccC
Q 005812 497 LKGRQLTVLKALD 509 (676)
Q Consensus 497 l~gr~l~v~~a~~ 509 (676)
|+||.|.|.++..
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999865
No 328
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.48 E-value=9.3e-14 Score=126.20 Aligned_cols=82 Identities=15% Similarity=0.311 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC--eeEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK--RPIAV 290 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v 290 (676)
.....+|||+||++.+++++|+++|++||.|.+|.|..+. ++|||||+|.+.++|..|++.|||..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3445679999999999999999999999999999997542 67999999999999999999999999965 99999
Q ss_pred EEecCCCC
Q 005812 291 DWAVPKNI 298 (676)
Q Consensus 291 ~~a~~~~~ 298 (676)
+|++++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99987643
No 329
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.6e-13 Score=114.15 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEE
Q 005812 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l 502 (676)
.+.++|||+|| .+++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+..|| +..|.|++|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l 79 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN-----GTQVESVQL 79 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTT-----TEEETTEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhC-----CCeECCeEE
Confidence 35689999996 89999999999999999999873 468999999999999999999999 999999999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
.|.++.++.
T Consensus 80 ~v~~a~~~~ 88 (97)
T 1x5p_A 80 KVNIARKQP 88 (97)
T ss_dssp EEECCSSCC
T ss_pred EEEECCCCC
Confidence 999998764
No 330
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=7.2e-14 Score=115.21 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|+++|++| .|..+++. .++|||||+|.+.++|.+|+..|| |..++|++|.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l~V 72 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFH-----QYSFRGKDLIV 72 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHT-----TEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhC-----CCeECCcEEEE
Confidence 4799999999999999999999999 99999874 468999999999999999999999 99999999999
Q ss_pred EEccCc
Q 005812 505 LKALDK 510 (676)
Q Consensus 505 ~~a~~k 510 (676)
.++...
T Consensus 73 ~~a~~~ 78 (88)
T 1wg1_A 73 QLQPTD 78 (88)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998653
No 331
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=115.19 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 292 (676)
....++|||+|||+++++++|+++|+.||.|.+| +.++.++. ||||+|.+.++|.+|+. |+|..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4456799999999999999999999999999987 44444554 99999999999999999 999999999999998
Q ss_pred ecCCC
Q 005812 293 AVPKN 297 (676)
Q Consensus 293 a~~~~ 297 (676)
+.++.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86654
No 332
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=8.2e-14 Score=114.86 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
..++|||+|||+++++++|+++|++| .|.++.+. +++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56789999999999999999999999 99999885 388999999999999999999999999999999999996
Q ss_pred CCC
Q 005812 295 PKN 297 (676)
Q Consensus 295 ~~~ 297 (676)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 333
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7.6e-14 Score=117.17 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEE-EEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
....++|||+|||+.+++++|+++|+.||.|..| .++.++.+ |.|||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 58887643 349999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998763
No 334
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.3e-14 Score=116.40 Aligned_cols=76 Identities=25% Similarity=0.376 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|+++|+.||.|..| +.+..++. ||||+|.+.++|.+|+. |+ +..|+|+.|.|
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~-----g~~~~g~~l~V 76 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QS-----QHSLGGHRLRV 76 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CS-----CCEETTEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cC-----CeEECCEEEEE
Confidence 4799999999999999999999999999987 55655554 99999999999999999 99 99999999999
Q ss_pred EEccCch
Q 005812 505 LKALDKK 511 (676)
Q Consensus 505 ~~a~~k~ 511 (676)
.++.++.
T Consensus 77 ~~a~~~~ 83 (94)
T 2e5g_A 77 RPREQKE 83 (94)
T ss_dssp BCSCCSC
T ss_pred EECCcCC
Confidence 9887653
No 335
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-13 Score=113.85 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|| ++++++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 899999999999999999999953 77999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9987653
No 336
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=110.86 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCCCHHH----HHHhhccC-CceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 215 QKWKLIIRNIPFKAKVNE----IKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~----l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
..+.|||+|||+.+++++ |+++|++| |.|.+| ++ |+|||.|.+.++|++|++.|+|..+.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 334499999999999988 55899999 599988 23 9999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 005812 290 VDWAVPKNIY 299 (676)
Q Consensus 290 v~~a~~~~~~ 299 (676)
|.+++.+.+.
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999876543
No 337
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.9e-13 Score=119.58 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHcCCCCCCCeeecC--cEE
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGT-GFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQL 502 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~F~t~~~A~~Al~~l~~~~~~g~~l~g--r~l 502 (676)
..|||+||++.+|+++|+++|++||.|.+|+++.+ .+|| |||+|.+.++|.+|++.|| |..|.| +.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~Ln-----G~~i~g~~~~L 98 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLD-----GQNIYNACCTL 98 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHT-----TCEEETTEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcC-----CCeecCCCcEE
Confidence 57889999999999999999999999999987754 2677 9999999999999999999 999988 899
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
+|.|++++.
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999998753
No 338
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=1.4e-13 Score=118.68 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 213 KTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~-~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
....++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344589999999999 999999999999999999998 46899999999999999999999999999999999
Q ss_pred EecCCC
Q 005812 292 WAVPKN 297 (676)
Q Consensus 292 ~a~~~~ 297 (676)
|+.+..
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997543
No 339
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.47 E-value=1.4e-13 Score=125.02 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC--cEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQL 502 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g--r~l 502 (676)
..+|||+|||+.+++++|+++|++||.|.+|+|+.+ .++|||||+|.+.++|.+|++.|| |..|.| +.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~Ln-----G~~i~g~g~~L 116 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLD-----GQNIYNACCTL 116 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHST-----TBCSSSSCSCE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhC-----CCEecCCCcEE
Confidence 357899999999999999999999999999988643 257999999999999999999999 999965 999
Q ss_pred EEEEccCch
Q 005812 503 TVLKALDKK 511 (676)
Q Consensus 503 ~v~~a~~k~ 511 (676)
+|.|++++.
T Consensus 117 ~V~~Ak~~~ 125 (164)
T 1sjr_A 117 RIDFSKLTS 125 (164)
T ss_dssp EEEECSSSS
T ss_pred EEEEecCCc
Confidence 999998763
No 340
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.46 E-value=1.8e-13 Score=112.81 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce--eCCeeEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIA 289 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~--~~g~~i~ 289 (676)
.....++|||+|||+++++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|++ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999985 78999999999999983 45655 4699999
Q ss_pred EEEecCCC
Q 005812 290 VDWAVPKN 297 (676)
Q Consensus 290 v~~a~~~~ 297 (676)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998764
No 341
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=128.98 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEE--------EEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV--------YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v--------~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 283 (676)
.....++|||+|||+.+++++|+.+|+.||.|..+ .+. .+|.++|||||+|.+.++|.+|+..|||..|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 34567899999999999999999999999998764 333 3688999999999999999999999999999
Q ss_pred CCeeEEEEEecCCC
Q 005812 284 GKRPIAVDWAVPKN 297 (676)
Q Consensus 284 ~g~~i~v~~a~~~~ 297 (676)
.|+.|.|.|+.+..
T Consensus 118 ~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 118 FGKPMVVQFARSAR 131 (143)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999997654
No 342
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=4.7e-13 Score=127.47 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHh--CCCeecCeEEEEecCCCCCCC---------CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEc
Q 005812 181 TVKSACASVALL--HQKEIKGGTVWARQLGGEGSK---------TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 249 (676)
Q Consensus 181 ~~~~A~~A~~~l--~~~~~~~~~i~v~~~~~~~~~---------~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~ 249 (676)
+.+.+..|+... ....+.+....++.....+.+ ...++|||+|||+.+++++|+++|++||.|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567888888876 444555555555544221111 124899999999999999999999999999999999
Q ss_pred ccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 005812 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (676)
Q Consensus 250 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 296 (676)
++. ++.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.|+...
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 886 5889999999999999999999864 56999999999987543
No 343
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=5.7e-13 Score=116.11 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHcCCCCCCCeeecC--cEEE
Q 005812 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGT-GFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLT 503 (676)
Q Consensus 427 ~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~F~t~~~A~~Al~~l~~~~~~g~~l~g--r~l~ 503 (676)
.|||+|||+.+++++|+++|++||.|..|+|+.. .|| |||+|.+.++|..|+..|| |..|.| +.|.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~Ln-----G~~i~g~~~~l~ 95 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALN-----GADIYAGCCTLK 95 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHT-----TCCCBTTBSEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC-----CCEecCCCeEEE
Confidence 4679999999999999999999999999988642 276 9999999999999999999 999987 6999
Q ss_pred EEEccCch
Q 005812 504 VLKALDKK 511 (676)
Q Consensus 504 v~~a~~k~ 511 (676)
|.+|.++.
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99998764
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=4.2e-13 Score=116.93 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=68.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeE-EEEEecCHHHHHHHHHHhCCceeCC--eeEEEEEe
Q 005812 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGF-AFVKFTCKRDAESAIQKFNGQKFGK--RPIAVDWA 293 (676)
Q Consensus 217 ~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~a 293 (676)
..|||+|||+.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45689999999999999999999999999999652 276 9999999999999999999999977 69999999
Q ss_pred cCCCC
Q 005812 294 VPKNI 298 (676)
Q Consensus 294 ~~~~~ 298 (676)
.++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 88753
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=3.3e-13 Score=114.66 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCC-----CCCHHHHHHhhccCCceEEEEEcccCCC-CCceeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 005812 213 KTQKWKLIIRNIPF-----KAKVNEIKDMFSPVGLVWNVYIPHNTDT-GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286 (676)
Q Consensus 213 ~~~~~~v~V~nLp~-----~~~e~~l~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 286 (676)
..++++|+|+||.. +-++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999963 2368999999999999999999988654 67899999999999999999999999999999
Q ss_pred eEEEEEecC
Q 005812 287 PIAVDWAVP 295 (676)
Q Consensus 287 ~i~v~~a~~ 295 (676)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=119.09 Aligned_cols=78 Identities=24% Similarity=0.367 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT---KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
..++|||+|||+.+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+|++.|+ .++|+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-------~~~G~ 78 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-------EEDGK 78 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-------EETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-------hcCCc
Confidence 358999999999999999999999999999 878877766 7899999999999999999999986 47788
Q ss_pred EEEEEEccC
Q 005812 501 QLTVLKALD 509 (676)
Q Consensus 501 ~l~v~~a~~ 509 (676)
.|.+..+..
T Consensus 79 ~~~~~~~~~ 87 (114)
T 2dnl_A 79 LYLCVSSPT 87 (114)
T ss_dssp EEEEECCSS
T ss_pred EEEeccCCC
Confidence 887766543
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=117.61 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=66.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 289 (676)
....++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++|++.|+ .+.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 888888776 7899999999999999999999883 25555555
Q ss_pred EEEe
Q 005812 290 VDWA 293 (676)
Q Consensus 290 v~~a 293 (676)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5543
No 348
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.44 E-value=2.4e-13 Score=111.82 Aligned_cols=71 Identities=28% Similarity=0.543 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhC----C-------ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCC
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAF----G-------EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~----G-------~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~ 492 (676)
+.++|||+|||+.+++++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+ .||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~---- 73 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFD---- 73 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcC----
Confidence 45899999999999999999999999 8 8999987643 799999999999999999 999
Q ss_pred CCeeecCcEEEEEE
Q 005812 493 LGIFLKGRQLTVLK 506 (676)
Q Consensus 493 ~g~~l~gr~l~v~~ 506 (676)
+..|+|+.|.|.+
T Consensus 74 -g~~~~g~~l~V~r 86 (87)
T 2hzc_A 74 -GIIFQGQSLKIRR 86 (87)
T ss_dssp -TCEETTEECEEEC
T ss_pred -CCEECCeEEEEeC
Confidence 9999999999974
No 349
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.43 E-value=1.2e-13 Score=119.94 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcE--
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ-- 501 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~-- 501 (676)
..++|||.|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|++.|| +..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD-----NTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHT-----TCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhC-----CCEECCcEee
Confidence 3589999999999999999999999999999988654 899999999999999999999 99999998
Q ss_pred ---EEEEEccCc
Q 005812 502 ---LTVLKALDK 510 (676)
Q Consensus 502 ---l~v~~a~~k 510 (676)
|.|..+.++
T Consensus 83 ~~~i~v~~~~~~ 94 (115)
T 3beg_B 83 TAYIRVKVDGPR 94 (115)
T ss_dssp CCBCEEEECC--
T ss_pred eEEEEeccCCCC
Confidence 777776553
No 350
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.42 E-value=2.2e-13 Score=118.41 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee-----E
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP-----I 288 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~-----i 288 (676)
...++|||+|||+++++++|+++|+.||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999875 89999999999999999999999999998 7
Q ss_pred EEEEecCC
Q 005812 289 AVDWAVPK 296 (676)
Q Consensus 289 ~v~~a~~~ 296 (676)
.|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776654
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=3.5e-13 Score=117.95 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 421 ~~~~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
...++++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+..|| +..|+|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~ln-----g~~~~g~ 101 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN-----GTQVESV 101 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHT-----TCBCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhC-----CCEECCe
Confidence 3445789999996 69999999999999999999875 468999999999999999999999 9999999
Q ss_pred EEEEEEccCch
Q 005812 501 QLTVLKALDKK 511 (676)
Q Consensus 501 ~l~v~~a~~k~ 511 (676)
.|.|.++.++.
T Consensus 102 ~l~V~~a~~~~ 112 (121)
T 2bz2_A 102 QLKVNIARKQP 112 (121)
T ss_dssp BCEEEECCSSC
T ss_pred EEEEEEeCCCC
Confidence 99999998764
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.9e-13 Score=112.64 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=65.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+.+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|.+|+.. .+.+.|+.|.|
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-------~~~~~g~~l~v 72 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-------DLIIKGISVHI 72 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-------EEEETTEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-------CceeCCEEEEE
Confidence 589999999999999999999999999999988754 689999999999999754221 46779999999
Q ss_pred EEccCch
Q 005812 505 LKALDKK 511 (676)
Q Consensus 505 ~~a~~k~ 511 (676)
.++.++.
T Consensus 73 ~~a~~~~ 79 (88)
T 1wf0_A 73 SNAEPKH 79 (88)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9998764
No 353
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=5e-13 Score=109.87 Aligned_cols=72 Identities=28% Similarity=0.511 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccC----C-------ceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPV----G-------LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 282 (676)
...++|||+|||+++++++|+++|+.| | .|.++.+.. .+|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 899999986 3799999999999999999 899999
Q ss_pred eCCeeEEEEE
Q 005812 283 FGKRPIAVDW 292 (676)
Q Consensus 283 ~~g~~i~v~~ 292 (676)
+.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.6e-13 Score=110.32 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a 293 (676)
...++|||+|||+++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35689999999999999999999999999999999875 789999999999999864331 34458999999999
Q ss_pred cCCCC
Q 005812 294 VPKNI 298 (676)
Q Consensus 294 ~~~~~ 298 (676)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 355
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.39 E-value=1.1e-12 Score=124.79 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCcEEEE
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr~l~v 504 (676)
.++|||+|||+++++++|+++|++||.|..|+++++. ++.++|||||+|.+.++|.+|+..++ ..|+|++|.|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~------~~~~Gr~l~V 181 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG------QKYKETDLLI 181 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT------CEETTEECEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC------CeECCEEEEE
Confidence 4899999999999999999999999999999998875 58899999999999999999997765 5999999999
Q ss_pred EEccC
Q 005812 505 LKALD 509 (676)
Q Consensus 505 ~~a~~ 509 (676)
.++..
T Consensus 182 ~~~~~ 186 (193)
T 2voo_A 182 LFKDD 186 (193)
T ss_dssp EETTT
T ss_pred EEhHH
Confidence 98654
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.38 E-value=1e-12 Score=114.98 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 291 (676)
.....++|||+|| ++++++|+++|+.||.|.+|.+.. ++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 699999999999999999999863 77999999999999999999999999999999999
Q ss_pred EecCCCC
Q 005812 292 WAVPKNI 298 (676)
Q Consensus 292 ~a~~~~~ 298 (676)
|+.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987643
No 357
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=9.6e-13 Score=111.84 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHHhCCceeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHcCCC
Q 005812 423 ELQNTIFICNL--PFDLD--------NEEVKQRFSAFGEVVSFVPVLHQVT--KRPKGTGFLKFKTVEAATAAVSASKTT 490 (676)
Q Consensus 423 ~~~~~l~V~nL--p~~~t--------eedl~~~F~~~G~v~~v~i~~~~~~--~~~~g~afV~F~t~~~A~~Al~~l~~~ 490 (676)
.++++|.|+|| |.++. ++||++.|++||.|.+|.|+++..+ +.++|+|||+|.++++|.+|+..||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln-- 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT-- 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT--
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC--
Confidence 35689999999 44443 4799999999999999999887654 3679999999999999999999999
Q ss_pred CCCCeeecCcEEEEEEccCc
Q 005812 491 SGLGIFLKGRQLTVLKALDK 510 (676)
Q Consensus 491 ~~~g~~l~gr~l~v~~a~~k 510 (676)
|..|+||.|.|.++...
T Consensus 81 ---G~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 81 ---GRKFANRVVVTKYCDPD 97 (105)
T ss_dssp ---TCEETTEECEEEEECHH
T ss_pred ---CCEeCCCEEEEEEeCHH
Confidence 99999999999997643
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.1e-12 Score=109.73 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC
Q 005812 422 DELQNTIFICNLPFDLD-----------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTT 490 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~~t-----------eedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~ 490 (676)
..++++|+|+||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|+..||
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln-- 85 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD-- 85 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST--
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC--
Confidence 34578999999944332 6899999999999999955 553 379999999999999999999999
Q ss_pred CCCCeeecCcEEEEEEccCch
Q 005812 491 SGLGIFLKGRQLTVLKALDKK 511 (676)
Q Consensus 491 ~~~g~~l~gr~l~v~~a~~k~ 511 (676)
|..|+||+|.|.++.++.
T Consensus 86 ---g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 ---GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp ---TCEETTEECEEEECCSCC
T ss_pred ---CCEECCcEEEEEEeCCCC
Confidence 999999999999988754
No 359
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.9e-12 Score=112.09 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=71.1
Q ss_pred CCCeEEEcCCC--CCC---CHHHHHHHHHhCCceeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 005812 424 LQNTIFICNLP--FDL---DNEEVKQRFSAFGEVVSFVPVLHQV----TKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 494 (676)
Q Consensus 424 ~~~~l~V~nLp--~~~---teedl~~~F~~~G~v~~v~i~~~~~----~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g 494 (676)
++++|+|+||- .++ .++||++.|++||.|.+|.|+.+.. ++.++|+|||+|.++++|.+|+..|| |
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln-----G 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-----G 93 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT-----T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC-----C
Confidence 56899999993 223 3789999999999999999998854 35678999999999999999999999 9
Q ss_pred eeecCcEEEEEEccC
Q 005812 495 IFLKGRQLTVLKALD 509 (676)
Q Consensus 495 ~~l~gr~l~v~~a~~ 509 (676)
..|+||.|.|.++..
T Consensus 94 r~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 94 RWFAGRKVVAEVYDQ 108 (118)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEECCcEEEEEEcCh
Confidence 999999999999754
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=1.4e-12 Score=126.84 Aligned_cols=78 Identities=26% Similarity=0.294 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCC
Q 005812 423 ELQNTIFICNLPFDL---------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 493 (676)
Q Consensus 423 ~~~~~l~V~nLp~~~---------teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~ 493 (676)
...++|||+|||..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|..|+.+|+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~----- 200 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMS----- 200 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHT-----
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhC-----
Confidence 346899999999998 7999999999999999999874 38999999999999999999999
Q ss_pred Ceee------------cCcEEEEEEccCch
Q 005812 494 GIFL------------KGRQLTVLKALDKK 511 (676)
Q Consensus 494 g~~l------------~gr~l~v~~a~~k~ 511 (676)
|..| .|+.|.|.||....
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9999 89999999998754
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.8e-12 Score=108.34 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 005812 212 SKTQKWKLIIRNIPFKAK-----------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~-----------e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 280 (676)
.+...++|+|+||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456788999999954432 6899999999999999976 432 2789999999999999999999999
Q ss_pred ceeCCeeEEEEEecCCCCC
Q 005812 281 QKFGKRPIAVDWAVPKNIY 299 (676)
Q Consensus 281 ~~~~g~~i~v~~a~~~~~~ 299 (676)
..|.|+.|.|.|+.++..+
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999999876544
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=1.9e-12 Score=125.83 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 005812 213 KTQKWKLIIRNIPFKA---------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~---------~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 283 (676)
....++|||+|||..+ ++++|+.+|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 7999999999999999999986 579999999999999999999999999
Q ss_pred ------------CCeeEEEEEecCCC
Q 005812 284 ------------GKRPIAVDWAVPKN 297 (676)
Q Consensus 284 ------------~g~~i~v~~a~~~~ 297 (676)
.|+.|.|.|+.+..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.30 E-value=5.3e-12 Score=107.20 Aligned_cols=82 Identities=30% Similarity=0.447 Sum_probs=71.3
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHhhccCCceEEEEEcccCCC--CCceeEEEEEecCHHHHHHHHHHhCCc
Q 005812 214 TQKWKLIIRNI--PFKAK--------VNEIKDMFSPVGLVWNVYIPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQ 281 (676)
Q Consensus 214 ~~~~~v~V~nL--p~~~~--------e~~l~~~F~~~G~i~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~ 281 (676)
.+++.|.+.|+ |..+. +++|++.|++||.|.+|.|+++..+ +.++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 43443 4799999999999999999988654 367899999999999999999999999
Q ss_pred eeCCeeEEEEEecC
Q 005812 282 KFGKRPIAVDWAVP 295 (676)
Q Consensus 282 ~~~g~~i~v~~a~~ 295 (676)
.|.|+.|.|.++.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999854
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=2.4e-12 Score=109.27 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=64.4
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 005812 221 IRNIPFKAKVNEIKDMF------------SPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (676)
Q Consensus 221 V~nLp~~~~e~~l~~~F------------~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i 288 (676)
+.|||+.+++++|+++| ++||.|.+|.|+++. +++++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778888777666 999999999999876 47899999999999999999999999999999999
Q ss_pred EEEEe
Q 005812 289 AVDWA 293 (676)
Q Consensus 289 ~v~~a 293 (676)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.26 E-value=1.6e-11 Score=106.27 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCC--CC---CHHHHHHhhccCCceEEEEEcccCC----CCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 005812 215 QKWKLIIRNIPF--KA---KVNEIKDMFSPVGLVWNVYIPHNTD----TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 285 (676)
Q Consensus 215 ~~~~v~V~nLp~--~~---~e~~l~~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 285 (676)
++++|+++|+-. .+ -+++|++.|++||.|.+|.|++++. ++.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567999999942 22 3789999999999999999998764 35678999999999999999999999999999
Q ss_pred eeEEEEEecC
Q 005812 286 RPIAVDWAVP 295 (676)
Q Consensus 286 ~~i~v~~a~~ 295 (676)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.26 E-value=2.6e-12 Score=109.04 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=63.2
Q ss_pred EcCCCCCCCHHHHHHHH------------HhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee
Q 005812 430 ICNLPFDLDNEEVKQRF------------SAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (676)
Q Consensus 430 V~nLp~~~teedl~~~F------------~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l 497 (676)
+.|||..+++++|+++| ++||.|.+|.|+++. .+.++|||||+|.++++|.+|+..|| |..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~ln-----g~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLN-----NRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHT-----TCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHC-----CCEE
Confidence 45677777777777666 999999999998875 47899999999999999999999999 9999
Q ss_pred cCcEEEEEEc
Q 005812 498 KGRQLTVLKA 507 (676)
Q Consensus 498 ~gr~l~v~~a 507 (676)
+||+|.|.++
T Consensus 94 ~Gr~i~v~~s 103 (104)
T 1jmt_A 94 NGQPIHAELS 103 (104)
T ss_dssp TTEECCEEEC
T ss_pred CCEEEEEEEc
Confidence 9999999986
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=97.66 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=64.0
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeee
Q 005812 425 QNTIFICNLP-------FDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (676)
Q Consensus 425 ~~~l~V~nLp-------~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l 497 (676)
.++|.|.-.. ..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|..|+..++ + +
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-----~--~ 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-----G--L 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-----B--C
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-----C--C
Confidence 3567776654 458999999999999999999887 3679999999999999999999876 4 5
Q ss_pred cCcEEEEEEccCch
Q 005812 498 KGRQLTVLKALDKK 511 (676)
Q Consensus 498 ~gr~l~v~~a~~k~ 511 (676)
.|++|.|.|+.++.
T Consensus 78 ~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 78 VDNPLKISWLEGQP 91 (100)
T ss_dssp SSSBCEEECSSCCC
T ss_pred CCCeEEEEEccCCC
Confidence 79999999988764
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=9.9e-11 Score=100.53 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCC--CC--------CHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCC
Q 005812 423 ELQNTIFICNLPF--DL--------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (676)
Q Consensus 423 ~~~~~l~V~nLp~--~~--------teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~ 492 (676)
.++++|.|+||=. +. .++||++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|+..||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~ln---- 76 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALH---- 76 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHT----
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhC----
Confidence 4568999999922 21 256899999999999999886542 58999999999999999999999
Q ss_pred CCeeecCcEEEEEEccCc
Q 005812 493 LGIFLKGRQLTVLKALDK 510 (676)
Q Consensus 493 ~g~~l~gr~l~v~~a~~k 510 (676)
|..|+||.|.|.++...
T Consensus 77 -G~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 77 -GRWFAGKMITAAYVPLP 93 (114)
T ss_dssp -TCEETTEECEEEEECHH
T ss_pred -CCEECCEEEEEEEEcHH
Confidence 99999999999998643
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=2.1e-10 Score=98.44 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=67.9
Q ss_pred CCCCcEEEEcCCCCCC----------CHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 005812 213 KTQKWKLIIRNIPFKA----------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~----------~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 282 (676)
+.+.++|.++|+=... -+++|++.|++||.|.+|.|+++. .+|||||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567789999983322 146889999999999999998763 58999999999999999999999999
Q ss_pred eCCeeEEEEEecC
Q 005812 283 FGKRPIAVDWAVP 295 (676)
Q Consensus 283 ~~g~~i~v~~a~~ 295 (676)
|.|+.|.|.|+..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999854
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.8e-10 Score=95.24 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=62.6
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 005812 216 KWKLIIRNIP-------FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (676)
Q Consensus 216 ~~~v~V~nLp-------~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i 288 (676)
..+|.|.-.+ ..+++++|+++|++||.|.+|.|+. .++|||||+|.+.++|..|++.+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 3455555443 4689999999999999999999983 4889999999999999999997544 679999
Q ss_pred EEEEecCCC
Q 005812 289 AVDWAVPKN 297 (676)
Q Consensus 289 ~v~~a~~~~ 297 (676)
.|.|+.++.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999997654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.07 E-value=2.4e-10 Score=117.16 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=66.1
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec
Q 005812 421 EDELQNTIFICN--LPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (676)
Q Consensus 421 ~~~~~~~l~V~n--Lp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~ 498 (676)
...++.+|||+| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+|++.|| |..+.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~ln-----G~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN-----GKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTT-----TCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC-----CCccc
Confidence 355678999999 588999999999999999999986532 47999999999999999999999 88773
Q ss_pred ---Cc--EEEEEEcc
Q 005812 499 ---GR--QLTVLKAL 508 (676)
Q Consensus 499 ---gr--~l~v~~a~ 508 (676)
|+ +|.|.++.
T Consensus 83 ~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 83 DDLGQKITLYLNFVE 97 (345)
T ss_dssp CTTSCEEECEEEECS
T ss_pred cccCCceEEEEEEee
Confidence 45 68888874
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.05 E-value=3.4e-10 Score=116.13 Aligned_cols=77 Identities=16% Similarity=0.336 Sum_probs=67.2
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCe
Q 005812 212 SKTQKWKLIIRN--IPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKR 286 (676)
Q Consensus 212 ~~~~~~~v~V~n--Lp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~ 286 (676)
...+..+|||+| |+..+++++|+++|++||.|.+|.++. ++|||||+|.+.++|++|++.|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 355678999999 578999999999999999999998865 579999999999999999999999987 345
Q ss_pred --eEEEEEec
Q 005812 287 --PIAVDWAV 294 (676)
Q Consensus 287 --~i~v~~a~ 294 (676)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 67888874
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.6e-09 Score=92.97 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHcCCCCCCCeeecC
Q 005812 422 DELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKT-VEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~-~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t-~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
-.+++.|+|.||+.. +++++|+++|+.||.|.+|.+..+.. .|||+|.+ +.+|..|+..|+. ++..|.|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~---~~~~i~g 85 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANN---GNLQLRN 85 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTT---SCBCTTS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhc---CCcEEeC
Confidence 345899999999999 99999999999999999998876632 59999999 7999999999963 3899999
Q ss_pred cEEEEEEcc
Q 005812 500 RQLTVLKAL 508 (676)
Q Consensus 500 r~l~v~~a~ 508 (676)
..+++....
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 999887754
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=6.5e-09 Score=83.21 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=62.1
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 005812 423 ELQNTIFICNLP----FDLDN----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 494 (676)
Q Consensus 423 ~~~~~l~V~nLp----~~~te----edl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g 494 (676)
++..||+|...| ..+.. .+|.+.|++||.|..++++.+. +||+|.+.++|.+|+. || |
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mn-----G 70 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LN-----G 70 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GT-----T
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cC-----C
Confidence 345788888776 23433 6789999999999999998763 8999999999999998 99 9
Q ss_pred eeecCcEEEEEEccC
Q 005812 495 IFLKGRQLTVLKALD 509 (676)
Q Consensus 495 ~~l~gr~l~v~~a~~ 509 (676)
..++||.|+|.++.+
T Consensus 71 ~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 71 KELLNRTITIALKSP 85 (91)
T ss_dssp CEETTEEEEEEECCC
T ss_pred eEeCCeEEEEEeCCC
Confidence 999999999999765
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-08 Score=80.98 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=64.8
Q ss_pred CCCCcEEEEcCCC----CCCCH----HHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 005812 213 KTQKWKLIIRNIP----FKAKV----NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (676)
Q Consensus 213 ~~~~~~v~V~nLp----~~~~e----~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 284 (676)
.++..+|+|.-.| ..+-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+|++ |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 3456788888876 23333 6789999999999999999864 8999999999999999 9999999
Q ss_pred CeeEEEEEecCCC
Q 005812 285 KRPIAVDWAVPKN 297 (676)
Q Consensus 285 g~~i~v~~a~~~~ 297 (676)
|+.|+|.++.|.-
T Consensus 75 Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 75 NRTITIALKSPSG 87 (91)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEeCCCCc
Confidence 9999999987653
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=2.2e-08 Score=85.90 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=68.6
Q ss_pred CCCCCCcEEEEcCCCCC-CCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecC-HHHHHHHHHHhC--CceeCCe
Q 005812 211 GSKTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC-KRDAESAIQKFN--GQKFGKR 286 (676)
Q Consensus 211 ~~~~~~~~v~V~nLp~~-~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--~~~~~g~ 286 (676)
..-..++.|+|+||+.. ++.++|+++|+.||.|..|.+..+.. .|||+|.+ +.+|..|+..|+ +..|+|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 35567899999999999 99999999999999999999998653 49999999 899999999995 7788999
Q ss_pred eEEEEEe
Q 005812 287 PIAVDWA 293 (676)
Q Consensus 287 ~i~v~~a 293 (676)
.+.++..
T Consensus 87 ~~~~evL 93 (121)
T 1owx_A 87 EVTWEVL 93 (121)
T ss_dssp SEEEEEC
T ss_pred EEEEEEC
Confidence 8888765
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=3.3e-08 Score=79.49 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=61.6
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCC
Q 005812 422 DELQNTIFICNLPFD-----LDN----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (676)
Q Consensus 422 ~~~~~~l~V~nLp~~-----~te----edl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~ 492 (676)
.++..||+|..++.. +.. .+|.+.|+.||.|..++++.+. +||+|.+.++|.+|+. |+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ld---- 78 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VD---- 78 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GG----
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cC----
Confidence 345679999988743 322 5689999999999999998763 9999999999999998 99
Q ss_pred CCeeecCcEEEEEEcc
Q 005812 493 LGIFLKGRQLTVLKAL 508 (676)
Q Consensus 493 ~g~~l~gr~l~v~~a~ 508 (676)
|..++||.|+|.+..
T Consensus 79 -G~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 79 -GMKVKGRAVKISGPS 93 (95)
T ss_dssp -GSEETTEEEEEECCC
T ss_pred -CeeeCCeEEEEeccC
Confidence 999999999998743
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.59 E-value=1.2e-07 Score=92.33 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=66.3
Q ss_pred CeEEEcCCC-----CCCCHHHHHHHHHhCCceeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCee
Q 005812 426 NTIFICNLP-----FDLDNEEVKQRFSAFGEVVSFVPVLHQV----TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (676)
Q Consensus 426 ~~l~V~nLp-----~~~teedl~~~F~~~G~v~~v~i~~~~~----~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~ 496 (676)
..+.+.|+- ..-.+++|++.|++||.|.++.|+.+.. ++.++|++||+|.+.++|.+|+..|| |..
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~-----gr~ 199 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-----GRW 199 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc-----Cce
Confidence 456666662 2335789999999999999999986643 44889999999999999999999999 999
Q ss_pred ecCcEEEEEEcc
Q 005812 497 LKGRQLTVLKAL 508 (676)
Q Consensus 497 l~gr~l~v~~a~ 508 (676)
++||.|.+.++.
T Consensus 200 ~~gr~i~~~~~~ 211 (222)
T 3dxb_A 200 FAGRKVVAEVYD 211 (222)
T ss_dssp SSSSBCEEEECC
T ss_pred ECCeEEEEEEcC
Confidence 999999999965
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.54 E-value=1.8e-07 Score=91.11 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCHHHHHHhhccCCceEEEEEcccC----CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 005812 228 AKVNEIKDMFSPVGLVWNVYIPHNT----DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (676)
Q Consensus 228 ~~e~~l~~~F~~~G~i~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~ 294 (676)
-.+++|++.|++||.|.++.|+++. .++.++|++||+|.+.++|.+|++.|||..+.||.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999998554 345899999999999999999999999999999999999984
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=8e-08 Score=77.22 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=63.1
Q ss_pred CCCCCcEEEEcCCCCC-----C-CH---HHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 005812 212 SKTQKWKLIIRNIPFK-----A-KV---NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~-----~-~e---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 282 (676)
..++..+|+|.-++.. + ++ .+|.+.|..||.|..+++..++ +||+|.+.++|.+|++ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456779999988743 2 31 5689999999999999999874 9999999999999999 99999
Q ss_pred eCCeeEEEEEec
Q 005812 283 FGKRPIAVDWAV 294 (676)
Q Consensus 283 ~~g~~i~v~~a~ 294 (676)
++|+.|+|.+-.
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.1e-06 Score=70.15 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhC-----CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAF-----GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~-----G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
.++|-|.|||..+++..|+.+..++ |.++.+.+..| .+-|+|+|.+...|-+|...|+ |..|.|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~-----G~ef~g 89 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILN-----GSQFQG 89 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHS-----SEEETT
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcC-----CeeecC
Confidence 5799999999999999999999999 99999988766 4569999999999999999999 999999
Q ss_pred cEEEEEEc
Q 005812 500 RQLTVLKA 507 (676)
Q Consensus 500 r~l~v~~a 507 (676)
|+|++.-.
T Consensus 90 r~Lr~gTv 97 (117)
T 2l9w_A 90 KVIRSGTI 97 (117)
T ss_dssp EEEEEECH
T ss_pred eEEEecCH
Confidence 99999753
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=1.5e-05 Score=65.20 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=67.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccC-----CceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPV-----GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 287 (676)
....++|-+-|||..++...|+.+..+| |.|..+.+..+. +-|+|+|.+...|.+|.-.|+|..|.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3457899999999999999999999999 999999999874 33999999999999999999999999999
Q ss_pred EEEEE
Q 005812 288 IAVDW 292 (676)
Q Consensus 288 i~v~~ 292 (676)
|++.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99963
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=0.00015 Score=58.96 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=60.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhC-----CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecC
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAF-----GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~-----G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~g 499 (676)
+.+|.|.|||..++++.|.-+|+.- |.|..+.... +-|+|+|.+...|++.|+.- ...|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~------~H~L~~ 73 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQA------DHELHG 73 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCS------CCBSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCC------cceecC
Confidence 5799999999999999999999972 5788876532 56899999999999999763 368899
Q ss_pred cEEEEEEccCc
Q 005812 500 RQLTVLKALDK 510 (676)
Q Consensus 500 r~l~v~~a~~k 510 (676)
..|.|....++
T Consensus 74 ~~LsV~P~~~~ 84 (104)
T 2dhx_A 74 AQLSLRPAPPR 84 (104)
T ss_dssp SBCEEEECCCC
T ss_pred eEEEEEcCCCC
Confidence 99999886554
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=0.0003 Score=57.18 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcc-C----CceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSP-V----GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~-~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i 288 (676)
....+|.|.|||..++++.|.-+|+. - |.|.++.... +-|+|+|.+.+.|++.|++ ....|.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45679999999999999999999976 2 5688877654 2389999999999999984 4778889999
Q ss_pred EEEEecCC
Q 005812 289 AVDWAVPK 296 (676)
Q Consensus 289 ~v~~a~~~ 296 (676)
.|....+.
T Consensus 77 sV~P~~~~ 84 (104)
T 2dhx_A 77 SLRPAPPR 84 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 99876443
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.0003 Score=57.51 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=62.5
Q ss_pred CeEEEcCCCCCC-C----HHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCCCCCeeecCc
Q 005812 426 NTIFICNLPFDL-D----NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (676)
Q Consensus 426 ~~l~V~nLp~~~-t----eedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~gr 500 (676)
++|+|.||+..+ . .+.++++|..|+++.....++. -.-..|.|.++++|.+|...|+ +..+.|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh-----~~~f~g~ 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLH-----KTEFLGK 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTST-----TSEETTE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhc-----cceecCc
Confidence 699999999876 2 3678999999999888766643 2246899999999999999999 9999999
Q ss_pred EEEEEEccC
Q 005812 501 QLTVLKALD 509 (676)
Q Consensus 501 ~l~v~~a~~ 509 (676)
.|+|-++++
T Consensus 75 ~~r~YFgq~ 83 (104)
T 1wey_A 75 EMKLYFAQT 83 (104)
T ss_dssp ECEEECCCC
T ss_pred eeEEEecCC
Confidence 999999874
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00042 Score=56.71 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=63.7
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 005812 216 KWKLIIRNIPFKA-K----VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (676)
Q Consensus 216 ~~~v~V~nLp~~~-~----e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 290 (676)
.++|+|.||+..+ . .+.++.+|..|+.+......+. =.-..|.|.++++|.+|...|++..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998854 2 2678999999999888777663 223789999999999999999999999999999
Q ss_pred EEecCCC
Q 005812 291 DWAVPKN 297 (676)
Q Consensus 291 ~~a~~~~ 297 (676)
.++.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9997543
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.32 E-value=0.00077 Score=54.28 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=65.9
Q ss_pred CeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCC
Q 005812 578 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 657 (676)
Q Consensus 578 ~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~ 657 (676)
++|.||+||..+|++++.+.+. ..+.+........... ........|+|.|.+.+++..-.+.++|+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~---------~~~~~d~~~fv~G~~s----~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQ---------PMPEHDYFEFFSNDTS----LYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHC---------SCCCEEEEEEEESCCS----STTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhc---------CcccceEEEEeCCccC----CCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 5799999999999999999998 4666665555444322 23345589999999999999999999998
Q ss_pred CC--CCCcccCcccccccc
Q 005812 658 PS--KLFYHHCFDAADAQC 674 (676)
Q Consensus 658 ~~--~~~~~~~~~~~~~~~ 674 (676)
.. .-|-..+++|.+|..
T Consensus 69 ~F~D~kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 69 VFLDNKGQEYPAIVEFAPF 87 (91)
T ss_dssp EEECTTCCEEECEEEECSS
T ss_pred EEEcCCCCEeeeEEEEcCC
Confidence 65 446677888888864
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.08 E-value=0.0018 Score=51.97 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=48.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 005812 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (676)
Q Consensus 212 ~~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (676)
.....+.++| ++|..+.-.||.++|+.||.|. |+++-| .-|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3445667777 9999999999999999999765 666655 249999999999999999753
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.84 E-value=0.0036 Score=50.22 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=48.8
Q ss_pred cCCeEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHc
Q 005812 576 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 655 (676)
Q Consensus 576 ~~~~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~ln 655 (676)
++..|++-++|..+...||.++|+ +||.|. |+++-| ..|||-|.+++.|..||..++
T Consensus 14 ~r~HVf~l~FP~ewKt~DI~~lFs---------~fggv~-I~WidD-------------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHVTFPKEWKTSDLYQLFS---------AFGNIQ-ISWIDD-------------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHT---------TTCSCC-CEEEET-------------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhhhHHHHHHhh---------ccCCEE-EEEEcC-------------CeEEEEecCHHHHHHHHHhcc
Confidence 334444449999999999999999 698665 888755 489999999999999999986
Q ss_pred CCC
Q 005812 656 NNP 658 (676)
Q Consensus 656 g~~ 658 (676)
-++
T Consensus 71 k~~ 73 (100)
T 1whv_A 71 YAE 73 (100)
T ss_dssp HCC
T ss_pred cCC
Confidence 443
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.84 E-value=0.0037 Score=50.27 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=57.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKR--PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~--~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~ 498 (676)
..|.|++||+.+|++++.+.++.++.+.....+..+.+.. ...-|||.|.+.+++......++ |..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~-----g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD-----GYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT-----TCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC-----CcEEE
Confidence 4799999999999999999999999888877766553322 34679999999999999999999 77664
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.61 E-value=0.0046 Score=52.07 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=60.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-eeEEEE
Q 005812 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK-RPIAVD 291 (676)
Q Consensus 213 ~~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~i~v~ 291 (676)
....+.|.|-+.|... ...|..+|++||.|.+..... ...+-.|.|.++.+|++||.+ ||..|.| ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 4457889999999885 578889999999999887632 346899999999999999996 9999975 667777
Q ss_pred Eec
Q 005812 292 WAV 294 (676)
Q Consensus 292 ~a~ 294 (676)
+..
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 643
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.51 E-value=0.0019 Score=51.96 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=46.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (676)
.+.++| ++|..+.-.||.++|+.||.|. |.++-| .-|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 356667 9999999999999999999554 777665 249999999999999999764
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.35 E-value=0.018 Score=48.43 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=55.9
Q ss_pred ccCcEEEEcCCCccccHHHHHHHhhcCCCeEEEEeeCCchhhhhcccccCCCccceEEEEeCCHHHHHHHHHHhCCCeec
Q 005812 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (676)
Q Consensus 119 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~v~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (676)
...+.|.|-+.|... ...|...|+.||.|.+...+ .....-+|.|.+..+|++||. .||..+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---------------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---------------NTGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---------------SSSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---------------CCCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 345689999999986 56688899999999998842 224578999999999999998 5999998
Q ss_pred Ce-EEEEe
Q 005812 199 GG-TVWAR 205 (676)
Q Consensus 199 ~~-~i~v~ 205 (676)
|. .|-+.
T Consensus 85 g~~mIGV~ 92 (119)
T 1wwh_A 85 ESIMIGVK 92 (119)
T ss_dssp TTEECEEE
T ss_pred CCEEEEEE
Confidence 64 34444
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.25 E-value=0.011 Score=47.83 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=55.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCC--CceeEEEEEecCHHHHHHHHHHhCCceeC---C--eeE
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG--LSKGFAFVKFTCKRDAESAIQKFNGQKFG---K--RPI 288 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g--~~i 288 (676)
.-+|.|+.||+.+||+++.+.++.+-.+..........+. ..-.-|||.|.+.++.....+.++|..|- | -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999999988876554433332221111 12234899999999999999999999883 2 244
Q ss_pred EEEEe
Q 005812 289 AVDWA 293 (676)
Q Consensus 289 ~v~~a 293 (676)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56776
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.89 E-value=0.0078 Score=48.47 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=47.2
Q ss_pred eEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCC
Q 005812 579 RLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNP 658 (676)
Q Consensus 579 ~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~ 658 (676)
.++| ++|..+...||..+|+ +||.|. |+++-| ..|||-|.+++.|..||..++-++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs---------~fggv~-I~WidD-------------TsAlvvf~~~~~a~~al~~i~~~~ 63 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFS---------AFGNIQ-ISWIDD-------------TSAFVSLSQPEQVKIAVNTSKYAE 63 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTT---------TSEEEE-EEEEET-------------TEEEEEEEEECHHHHHHHHHTTCS
T ss_pred EEEE-eCChhhhhHHHHHHHh---------ccCCEE-EEEEcC-------------CeEEEEecCHHHHHHHHHhcccCC
Confidence 3555 9999999999999999 699654 777755 489999999999999999997544
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.72 E-value=0.008 Score=51.30 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=57.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEE-EEEcccC------------CCC-CceeEEEEEecCHHHHHHHHHHhCC
Q 005812 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNT------------DTG-LSKGFAFVKFTCKRDAESAIQKFNG 280 (676)
Q Consensus 215 ~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~-v~i~~~~------------~~~-~~~g~afV~f~~~~~A~~A~~~l~~ 280 (676)
....|.|-+.|.... ..+...|++||.|.+ +...+.. ... ....+..|+|.++.+|.+||.. ||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 456788999977665 577789999999876 2222100 000 1346789999999999999996 99
Q ss_pred ceeCCeeEEEEEecC
Q 005812 281 QKFGKRPIAVDWAVP 295 (676)
Q Consensus 281 ~~~~g~~i~v~~a~~ 295 (676)
..|.|..|-|.+..+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888887744
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.16 E-value=0.021 Score=46.08 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=52.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHcCCCCCCCeeec
Q 005812 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKR--PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (676)
Q Consensus 425 ~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~--~~g~afV~F~t~~~A~~Al~~l~~~~~~g~~l~ 498 (676)
+-.|.|+.||+.+|++++.+.++..-.+.+...+..+.+.. .-.-|||.|.+.++.....+..+ |..|-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~-----g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD-----GYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST-----TEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC-----CcEEE
Confidence 35799999999999999998888765655544433322221 23568999999999999999999 77774
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.71 E-value=0.059 Score=45.98 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=55.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEE-Eeec------------CCCC-CcceEEEEEeCCHHHHHHHHHHcCCCC
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFV-PVLH------------QVTK-RPKGTGFLKFKTVEAATAAVSASKTTS 491 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~-i~~~------------~~~~-~~~g~afV~F~t~~~A~~Al~~l~~~~ 491 (676)
..|.|-+.|... ...|.+.|++||.|..-. .... +... ...++..|+|.++.+|.+||.. |
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-N--- 82 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-N--- 82 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-T---
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-C---
Confidence 578889997655 457889999999987621 1100 0000 1256789999999999999954 7
Q ss_pred CCCeeecCcEEEEEEcc
Q 005812 492 GLGIFLKGRQLTVLKAL 508 (676)
Q Consensus 492 ~~g~~l~gr~l~v~~a~ 508 (676)
|..|+|..|-|.+..
T Consensus 83 --G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 --GAVFNGVLLGVIPYT 97 (132)
T ss_dssp --TCEETTEECEEEECC
T ss_pred --CeEeCcEEEEEEECC
Confidence 899999988888874
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.85 E-value=0.045 Score=57.89 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=42.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 005812 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (676)
Q Consensus 216 ~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (676)
.++|+|. .|..+++.+|.++|++||.|.++.+-.+ ..-||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-----~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-----FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-----SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-----CCeEEEEEeCCHHHHHHHHhc
Confidence 3689997 7999999999999999999999988764 347999999999999977664
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.37 E-value=0.071 Score=56.42 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=40.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 005812 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486 (676)
Q Consensus 426 ~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~ 486 (676)
++|+|. .|..+++.+|.++|++||+|.++... +.. .-||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~--~~~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFY--ESF---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE--CSS---SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE--ccC---CeEEEEEeCCHHHHHHHHhc
Confidence 799997 79999999999999999999997443 222 37999999999998877643
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.01 E-value=2.9 Score=44.98 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=46.6
Q ss_pred eEEEecCCcccCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHHHHHHHHHcCCC
Q 005812 579 RLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNP 658 (676)
Q Consensus 579 ~l~V~nlp~~~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A~~Ai~~lng~~ 658 (676)
.++|. +|..+...+|.++|+ .||.| .|+++ +...|||.|.+++.|..++++++.+|
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs---------~fg~v-~V~wi-------------ddt~a~V~~~~~~~a~~~l~~~~~~~ 497 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFS---------AFGNI-QISWI-------------DDTSAFVSLSQPEQVQIAVNTSKYAE 497 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGG---------GGCCC-EEEEC-------------SSSEEEEECSCHHHHHHHHHHHTTCS
T ss_pred EEEEe-CCCCCCHHHHHHHHH---------hcCCE-EEEEE-------------cCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 45555 999999999999998 58865 36655 34579999999999999999998766
Q ss_pred C
Q 005812 659 S 659 (676)
Q Consensus 659 ~ 659 (676)
.
T Consensus 498 ~ 498 (507)
T 3d45_A 498 S 498 (507)
T ss_dssp S
T ss_pred c
Confidence 4
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.63 E-value=5.3 Score=43.01 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=46.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (676)
.....++|+ +|..+...+|.++|+.||.+ +|+++.+ ..|||.|.+.+.|..++..++
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 345677777 99999999999999999965 4666544 249999999999999999875
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=50.76 E-value=84 Score=24.26 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhCCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 005812 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (676)
Q Consensus 424 ~~~~l~V~nLp~~~teedl~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~F~t~~~A~~Al~~l~ 488 (676)
.++-|.|-|+|..+-..++.-...-.|---+|..+ .|.|.|.|.+.++..-|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 35889999999999998888888878876666543 4569999999999999998864
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=35.07 E-value=1.5e+02 Score=22.79 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=46.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 005812 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (676)
Q Consensus 214 ~~~~~v~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (676)
..++-|-|-|+|..+-..++.-.....|---.|..+- |.|.|.|.+.++-+.|+.+|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 4567888999999999888877777777655565543 459999999999999999863
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.32 E-value=83 Score=28.00 Aligned_cols=48 Identities=29% Similarity=0.399 Sum_probs=35.7
Q ss_pred cEEEEcCCCC---------CCCHHHHHHhh--ccCCceEEEEEcccCCCCCceeEEEEEecC
Q 005812 217 WKLIIRNIPF---------KAKVNEIKDMF--SPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (676)
Q Consensus 217 ~~v~V~nLp~---------~~~e~~l~~~F--~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 267 (676)
..++|-|+|. .....+|++.| +.|.++. |+....+ .| +.|+|.|.|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~G-h~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-LG-HSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-SB-EEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-CC-CceeEEEEecC
Confidence 4788888887 24467899977 9999876 5555543 23 78999999996
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.70 E-value=1.2e+02 Score=27.08 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=40.1
Q ss_pred CCeEEEecCCc-c--------cCHHHHHHHHHHHHHhhhcccCCCceEeeeeeccccCCCCCCCCcceEEEEEeCChHHH
Q 005812 577 RTRLVIYNLPK-S--------MTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHA 647 (676)
Q Consensus 577 ~~~l~V~nlp~-~--------~te~~l~~~F~~~~~~~~~~~~G~V~~v~i~~~~~~~~~~~~~~s~g~afV~F~~~~~A 647 (676)
+..+.|.|+|. . .+..+|++.|.. +.|..++ |+.+..+. -+.|++.|.|.+--..
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~-------~~F~p~k-v~~l~~~~--------Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYIL-------RGFNPTR-VRPLWNYL--------GHSGTAIVEFNKDWNG 75 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHH-------TTCCCSE-EEEEECSS--------BEEEEEEEECCSSHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHh-------cCCCCce-eEecccCC--------CCceeEEEEecCChHH
Confidence 36788999997 2 345789998832 1588876 77776642 4689999999987544
Q ss_pred H
Q 005812 648 L 648 (676)
Q Consensus 648 ~ 648 (676)
.
T Consensus 76 f 76 (172)
T 4e8u_A 76 L 76 (172)
T ss_dssp H
T ss_pred H
Confidence 4
Done!