Query 005813
Match_columns 676
No_of_seqs 217 out of 2750
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 14:07:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.3E-33 5E-38 330.8 28.5 392 203-644 211-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.2E-32 4.8E-37 322.5 27.1 509 31-646 69-584 (968)
3 PLN03210 Resistant to P. syrin 99.9 8.7E-24 1.9E-28 249.5 21.8 314 264-627 588-910 (1153)
4 PLN03210 Resistant to P. syrin 99.9 5.2E-22 1.1E-26 234.5 22.9 337 265-649 558-909 (1153)
5 KOG4194 Membrane glycoprotein 99.9 2.3E-23 5E-28 209.6 3.7 362 204-641 78-447 (873)
6 KOG4194 Membrane glycoprotein 99.9 1.2E-22 2.7E-27 204.4 4.1 341 233-646 79-429 (873)
7 KOG0472 Leucine-rich repeat pr 99.8 2.7E-24 5.8E-29 207.2 -12.1 483 8-621 47-539 (565)
8 KOG0444 Cytoskeletal regulator 99.8 2.6E-22 5.6E-27 203.3 -2.3 365 204-624 7-376 (1255)
9 KOG0618 Serine/threonine phosp 99.8 5.4E-23 1.2E-27 217.9 -7.7 243 263-564 239-486 (1081)
10 KOG0618 Serine/threonine phosp 99.8 2.1E-22 4.5E-27 213.5 -5.8 64 287-355 217-280 (1081)
11 KOG0472 Leucine-rich repeat pr 99.8 7.6E-23 1.6E-27 197.2 -12.7 239 2-300 64-308 (565)
12 KOG0444 Cytoskeletal regulator 99.8 6E-22 1.3E-26 200.7 -6.9 338 227-619 50-395 (1255)
13 PRK15387 E3 ubiquitin-protein 99.6 2.7E-14 5.9E-19 157.2 15.3 256 265-621 201-456 (788)
14 PRK15387 E3 ubiquitin-protein 99.5 9.9E-13 2.1E-17 145.0 16.2 255 6-348 201-455 (788)
15 KOG0617 Ras suppressor protein 99.3 2.4E-14 5.1E-19 123.0 -5.7 181 452-649 31-215 (264)
16 PRK15370 E3 ubiquitin-protein 99.3 3.9E-12 8.4E-17 141.3 9.2 73 265-347 178-250 (754)
17 PRK15370 E3 ubiquitin-protein 99.3 8.1E-12 1.8E-16 138.8 11.4 245 289-621 178-426 (754)
18 KOG4341 F-box protein containi 99.3 2.5E-13 5.4E-18 133.1 -3.0 211 111-352 162-386 (483)
19 KOG4341 F-box protein containi 99.3 9.7E-14 2.1E-18 135.9 -6.5 284 55-376 139-441 (483)
20 KOG0617 Ras suppressor protein 99.2 6.6E-13 1.4E-17 114.2 -4.0 162 430-609 33-195 (264)
21 KOG4237 Extracellular matrix p 99.2 1.3E-12 2.8E-17 127.0 -2.9 86 549-644 269-357 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.1 4.5E-11 9.7E-16 135.0 5.4 80 265-347 571-651 (889)
23 cd00116 LRR_RI Leucine-rich re 99.0 4.3E-11 9.2E-16 123.1 0.8 71 226-301 17-93 (319)
24 cd00116 LRR_RI Leucine-rich re 99.0 6.2E-11 1.3E-15 121.9 -1.2 118 447-564 74-203 (319)
25 KOG4237 Extracellular matrix p 98.8 1.5E-10 3.3E-15 112.8 -3.3 87 474-564 270-356 (498)
26 KOG4658 Apoptotic ATPase [Sign 98.8 3.9E-09 8.4E-14 119.5 4.5 106 4-122 543-651 (889)
27 PRK15386 type III secretion pr 98.7 7.2E-08 1.6E-12 97.9 11.5 192 450-675 48-244 (426)
28 KOG3207 Beta-tubulin folding c 98.7 4E-09 8.7E-14 104.5 2.1 185 429-620 145-336 (505)
29 PF14580 LRR_9: Leucine-rich r 98.6 1.7E-08 3.8E-13 91.4 1.7 136 3-167 16-151 (175)
30 KOG3207 Beta-tubulin folding c 98.6 1.9E-08 4E-13 100.0 1.2 182 450-644 142-337 (505)
31 KOG1909 Ran GTPase-activating 98.5 1.6E-08 3.4E-13 97.7 0.4 209 430-644 30-281 (382)
32 PF14580 LRR_9: Leucine-rich r 98.5 1.1E-07 2.4E-12 86.2 3.7 126 499-642 16-149 (175)
33 KOG0532 Leucine-rich repeat (L 98.4 1.9E-08 4.1E-13 103.1 -2.7 187 435-643 80-270 (722)
34 KOG1259 Nischarin, modulator o 98.4 1.5E-07 3.3E-12 88.9 3.1 126 430-564 284-409 (490)
35 KOG2120 SCF ubiquitin ligase, 98.4 2.3E-09 5E-14 100.9 -9.5 130 84-242 234-373 (419)
36 KOG1259 Nischarin, modulator o 98.3 8.5E-08 1.8E-12 90.5 -0.5 126 500-644 282-410 (490)
37 PRK15386 type III secretion pr 98.2 6E-06 1.3E-10 84.2 8.8 136 477-644 51-188 (426)
38 KOG1859 Leucine-rich repeat pr 98.2 6.2E-08 1.3E-12 101.9 -6.1 176 449-645 79-291 (1096)
39 KOG2120 SCF ubiquitin ligase, 98.1 2.2E-07 4.8E-12 87.8 -2.3 158 204-373 185-350 (419)
40 COG4886 Leucine-rich repeat (L 98.1 1.8E-06 3.8E-11 91.6 3.6 171 431-621 117-288 (394)
41 COG4886 Leucine-rich repeat (L 98.1 4.2E-06 9.1E-11 88.7 5.4 192 434-645 97-289 (394)
42 PF13855 LRR_8: Leucine rich r 98.0 5.7E-06 1.2E-10 61.2 4.3 57 555-620 2-59 (61)
43 KOG1909 Ran GTPase-activating 98.0 9.4E-07 2E-11 85.7 -0.4 67 498-564 237-308 (382)
44 PF13855 LRR_8: Leucine rich r 98.0 1.2E-05 2.5E-10 59.5 4.9 57 586-644 1-60 (61)
45 KOG0532 Leucine-rich repeat (L 97.8 8.6E-07 1.9E-11 91.2 -5.5 169 456-645 77-246 (722)
46 KOG1947 Leucine rich repeat pr 97.6 1.1E-05 2.3E-10 88.2 -1.2 64 311-374 242-308 (482)
47 PLN03150 hypothetical protein; 97.5 0.00012 2.6E-09 81.6 5.8 84 456-539 420-503 (623)
48 KOG1947 Leucine rich repeat pr 97.5 2E-05 4.4E-10 86.1 -0.7 117 202-325 186-308 (482)
49 PF12799 LRR_4: Leucine Rich r 97.4 0.00019 4.2E-09 48.6 4.0 41 586-628 1-41 (44)
50 PLN03150 hypothetical protein; 97.3 0.00033 7.2E-09 78.1 5.7 108 479-598 419-527 (623)
51 KOG3665 ZYG-1-like serine/thre 97.2 0.00015 3.2E-09 80.7 2.3 80 430-511 122-204 (699)
52 KOG2982 Uncharacterized conser 97.2 0.00078 1.7E-08 64.4 6.4 189 430-628 71-267 (418)
53 KOG3665 ZYG-1-like serine/thre 97.1 0.00029 6.2E-09 78.5 3.5 133 202-347 120-259 (699)
54 KOG2982 Uncharacterized conser 97.1 0.00013 2.9E-09 69.5 0.6 204 451-668 68-283 (418)
55 PF12799 LRR_4: Leucine Rich r 97.1 0.00036 7.9E-09 47.2 2.4 39 31-71 1-40 (44)
56 KOG0531 Protein phosphatase 1, 97.1 0.00011 2.3E-09 78.2 -0.4 106 430-541 95-201 (414)
57 KOG1644 U2-associated snRNP A' 97.0 0.0017 3.7E-08 58.7 6.2 105 524-644 40-151 (233)
58 KOG0531 Protein phosphatase 1, 96.9 0.00022 4.9E-09 75.7 0.3 182 450-644 91-288 (414)
59 KOG1859 Leucine-rich repeat pr 96.7 4.2E-05 9.2E-10 81.2 -7.0 14 429-442 108-121 (1096)
60 COG5238 RNA1 Ran GTPase-activa 96.7 0.00068 1.5E-08 63.9 1.2 186 430-620 30-252 (388)
61 KOG1644 U2-associated snRNP A' 96.6 0.0045 9.8E-08 56.1 5.9 102 8-124 21-124 (233)
62 KOG4579 Leucine-rich repeat (L 96.2 0.0011 2.3E-08 56.1 -0.3 64 549-621 48-111 (177)
63 KOG2123 Uncharacterized conser 96.0 0.00015 3.2E-09 68.5 -7.0 105 6-119 19-123 (388)
64 KOG4579 Leucine-rich repeat (L 96.0 0.00017 3.7E-09 60.8 -6.0 90 526-630 53-142 (177)
65 KOG2123 Uncharacterized conser 96.0 0.00022 4.8E-09 67.3 -6.0 78 479-563 20-97 (388)
66 KOG3864 Uncharacterized conser 95.1 0.0049 1.1E-07 55.9 -0.3 88 527-624 102-190 (221)
67 COG5238 RNA1 Ran GTPase-activa 94.1 0.088 1.9E-06 50.2 5.1 43 284-327 87-134 (388)
68 KOG3864 Uncharacterized conser 93.9 0.0078 1.7E-07 54.6 -1.9 82 479-563 102-185 (221)
69 PF13306 LRR_5: Leucine rich r 93.7 0.41 8.8E-06 41.2 8.6 82 199-297 7-89 (129)
70 PF13306 LRR_5: Leucine rich r 93.6 0.22 4.7E-06 43.0 6.7 39 585-628 80-119 (129)
71 KOG2739 Leucine-rich acidic nu 93.4 0.033 7.1E-07 52.9 1.1 59 265-323 65-127 (260)
72 KOG2739 Leucine-rich acidic nu 92.7 0.025 5.5E-07 53.6 -0.7 36 477-512 64-101 (260)
73 PF13504 LRR_7: Leucine rich r 92.3 0.1 2.2E-06 27.1 1.6 17 610-627 1-17 (17)
74 PF00560 LRR_1: Leucine Rich R 89.7 0.23 4.9E-06 27.7 1.5 9 612-620 2-10 (22)
75 PF00560 LRR_1: Leucine Rich R 89.1 0.27 5.8E-06 27.4 1.5 19 266-285 1-19 (22)
76 smart00367 LRR_CC Leucine-rich 82.9 0.77 1.7E-05 26.8 1.3 17 609-625 1-17 (26)
77 smart00370 LRR Leucine-rich re 82.3 0.73 1.6E-05 26.8 1.1 22 53-75 1-22 (26)
78 smart00369 LRR_TYP Leucine-ric 82.3 0.73 1.6E-05 26.8 1.1 22 53-75 1-22 (26)
79 smart00364 LRR_BAC Leucine-ric 56.9 7 0.00015 22.8 1.2 18 6-23 2-19 (26)
80 PF13516 LRR_6: Leucine Rich r 51.0 11 0.00023 21.3 1.4 17 526-542 2-18 (24)
81 KOG0473 Leucine-rich repeat pr 46.0 1.3 2.7E-05 41.6 -4.7 85 522-621 38-122 (326)
82 smart00365 LRR_SD22 Leucine-ri 41.6 17 0.00038 21.2 1.3 16 554-571 2-17 (26)
83 KOG4308 LRR-containing protein 37.2 1.1 2.4E-05 48.1 -7.6 93 525-621 203-301 (478)
84 PF05725 FNIP: FNIP Repeat; I 27.7 89 0.0019 20.8 3.2 11 584-594 32-42 (44)
85 KOG3763 mRNA export factor TAP 22.0 68 0.0015 34.6 2.5 70 229-305 215-286 (585)
86 KOG3763 mRNA export factor TAP 20.5 50 0.0011 35.6 1.2 90 522-619 214-310 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-33 Score=330.84 Aligned_cols=392 Identities=15% Similarity=0.135 Sum_probs=227.2
Q ss_pred CCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccccc
Q 005813 203 IPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLP 282 (676)
Q Consensus 203 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~ 282 (676)
+++|+.|.++++..... .+..+..+++|++|++.+|.....++. .+..+ ++|++|++++|.....+|
T Consensus 211 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~-----~l~~l----~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNLTGPIPS-----SLGNL----KNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred cCCccEEECcCCccCCc----CChhHhcCCCCCEEECcCceeccccCh-----hHhCC----CCCCEEECcCCeeeccCc
Confidence 44555555555443321 122234555555555555422112221 13333 555555555544333444
Q ss_pred ccccCCCCCceEeecCCCCCCCCCC-ccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccc-cCC
Q 005813 283 QSSLSLSSLREIEICSCHSLVSFPE-VALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAV-QVP 360 (676)
Q Consensus 283 ~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~ 360 (676)
..+..+++|++|++++|.....+|. ...+++|+.|++++|......+..+ ..+++|+.|++++|.--..++.. ...
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 4555555555555555443333333 2234555555555554333333333 44555555555553222122211 112
Q ss_pred CCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCC
Q 005813 361 SSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGC 440 (676)
Q Consensus 361 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 440 (676)
++|+.|+++++.--..++ . .....++|+.|++.++.-... .|..+.. .++|+.|++++|
T Consensus 356 ~~L~~L~Ls~n~l~~~~p--~-------~~~~~~~L~~L~l~~n~l~~~------~p~~~~~------~~~L~~L~L~~n 414 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIP--E-------GLCSSGNLFKLILFSNSLEGE------IPKSLGA------CRSLRRVRLQDN 414 (968)
T ss_pred CCCcEEECCCCeeEeeCC--h-------hHhCcCCCCEEECcCCEeccc------CCHHHhC------CCCCCEEECcCC
Confidence 335555555432211111 0 011233566666665432111 1111211 267888888887
Q ss_pred CChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCc
Q 005813 441 SKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEE 520 (676)
Q Consensus 441 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 520 (676)
......|..+..+++|+.|++++|.....++..+..+++|+.|++++|.....+|..+ ..++|+.|++++|......+.
T Consensus 415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccCh
Confidence 7666677778888899999998886555566666678899999999887766666544 457889999998877667776
Q ss_pred CCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccc-ccccccccccCCCCCCCCccEEeecCCCCc
Q 005813 521 EDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMV-SFPLEDKRLGTTLPLPASLTSLGISNFPNL 599 (676)
Q Consensus 521 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~-~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l 599 (676)
.+..+++|++|++++|......+ ..+.++++|+.|++++| .+. .+|... ..+++|+.|++++|.-.
T Consensus 494 ~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N--~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 494 KLGSLSELMQLKLSENKLSGEIP----DELSSCKKLVSLDLSHN--QLSGQIPASF-------SEMPVLSQLDLSQNQLS 560 (968)
T ss_pred hhhhhhccCEEECcCCcceeeCC----hHHcCccCCCEEECCCC--cccccCChhH-------hCcccCCEEECCCCccc
Confidence 77888899999999988776555 34778889999999987 554 333332 24488999999985444
Q ss_pred ccchhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCCh
Q 005813 600 ERLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCP 644 (676)
Q Consensus 600 ~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~ 644 (676)
..+|..+..+++|+.|++++|+-...+|..+....+....+.+++
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 578888888999999999998766667765443444444455555
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-32 Score=322.54 Aligned_cols=509 Identities=18% Similarity=0.154 Sum_probs=354.3
Q ss_pred CCccEEEEeCCCCCC-CCC-CcCCCCccceEeeecccCce-EeCCccCCCCCCCCCCCcceEEecccccccccccccCCC
Q 005813 31 SNLATLNFEDCSVCT-TLP-SVGQLHSLKHLAVRGMSRVK-SLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRTGQ 107 (676)
Q Consensus 31 ~~L~~L~l~~c~~l~-~l~-~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 107 (676)
..++.|+++++ .+. .++ .+..+++|+.|++++|. +. .+|...+. .+++|+.|+++++.-.... . ..
T Consensus 69 ~~v~~L~L~~~-~i~~~~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~-----~l~~L~~L~Ls~n~l~~~~-p---~~ 137 (968)
T PLN00113 69 SRVVSIDLSGK-NISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDIFT-----TSSSLRYLNLSNNNFTGSI-P---RG 137 (968)
T ss_pred CcEEEEEecCC-CccccCChHHhCCCCCCEEECCCCc-cCCcCChHHhc-----cCCCCCEEECcCCcccccc-C---cc
Confidence 35667777664 333 333 46677777777777774 43 45543321 2555555555543211000 0 01
Q ss_pred CcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEEEcCCCCeeEEeeccccCCCcceeec
Q 005813 108 GVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCR 187 (676)
Q Consensus 108 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 187 (676)
.+++|++|++++|. +.+..| ..+..+++|++|++++|......+.
T Consensus 138 ---~l~~L~~L~Ls~n~-~~~~~p------------------~~~~~l~~L~~L~L~~n~l~~~~p~------------- 182 (968)
T PLN00113 138 ---SIPNLETLDLSNNM-LSGEIP------------------NDIGSFSSLKVLDLGGNVLVGKIPN------------- 182 (968)
T ss_pred ---ccCCCCEEECcCCc-ccccCC------------------hHHhcCCCCCEEECccCcccccCCh-------------
Confidence 34445555554432 111222 2355677788888877754322211
Q ss_pred CCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcc
Q 005813 188 DTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRL 267 (676)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L 267 (676)
....+++|+.|++++|..... .+..+..+++|+.|++.++.....++.. +..+ ++|
T Consensus 183 -----------~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~~l----~~L 238 (968)
T PLN00113 183 -----------SLTNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGEIPYE-----IGGL----TSL 238 (968)
T ss_pred -----------hhhhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCcCChh-----HhcC----CCC
Confidence 123567888888888876542 3345688999999999997533344432 5555 999
Q ss_pred eEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCC-ccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeec
Q 005813 268 EYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPE-VALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIY 346 (676)
Q Consensus 268 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 346 (676)
++|++++|.....+|..+..+++|++|++++|.....+|. ...+++|++|++++|.....+|..+ ..+++|+.|++.
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~ 316 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLF 316 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECC
Confidence 9999999876667888999999999999999865555554 4458999999999998444666655 789999999999
Q ss_pred ccccccccccc-cCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhcccc
Q 005813 347 GCRSLTYIAAV-QVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEV 425 (676)
Q Consensus 347 ~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 425 (676)
++.....++.. ...++|+.|++.++.--..++. .....++|+.|+++++.-... + |..+..
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~---------~l~~~~~L~~L~Ls~n~l~~~-~-----p~~~~~--- 378 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK---------NLGKHNNLTVLDLSTNNLTGE-I-----PEGLCS--- 378 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh---------HHhCCCCCcEEECCCCeeEee-C-----ChhHhC---
Confidence 86433333321 2346699999998754334431 112356899999988653222 1 111111
Q ss_pred CCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCcc
Q 005813 426 GNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQ 505 (676)
Q Consensus 426 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 505 (676)
..+++.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....++..+..+++|+
T Consensus 379 ---~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 379 ---SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred ---cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 26899999999887778888899999999999999966667788888899999999999987777777778899999
Q ss_pred ceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccc-ccccccccccCCCCC
Q 005813 506 QLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMV-SFPLEDKRLGTTLPL 584 (676)
Q Consensus 506 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~-~i~~~~~~l~~~~~~ 584 (676)
.|++++|.....+|.. ...++|+.|++++|......+ ..+.++++|+.|++++| .+. .+|.... .
T Consensus 456 ~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~-------~ 521 (968)
T PLN00113 456 MLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVP----RKLGSLSELMQLKLSEN--KLSGEIPDELS-------S 521 (968)
T ss_pred EEECcCceeeeecCcc-cccccceEEECcCCccCCccC----hhhhhhhccCEEECcCC--cceeeCChHHc-------C
Confidence 9999999877777743 356899999999998876555 35789999999999997 654 4554432 3
Q ss_pred CCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCC-CccccceeeecCChhh
Q 005813 585 PASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKG-LPSSLLRLYIVGCPLI 646 (676)
Q Consensus 585 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~-l~~~L~~L~i~~c~~l 646 (676)
+++|+.|++++|.-...+|..+..+++|+.|++++|.....+|..- -.++|+.+++++|+..
T Consensus 522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 4899999999954444678889999999999999996555666521 1678999999999743
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=8.7e-24 Score=249.53 Aligned_cols=314 Identities=22% Similarity=0.319 Sum_probs=211.5
Q ss_pred CCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCc-cCCCCccEEeeccccCcCcCchhhccCCCCCccE
Q 005813 264 SCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEV-ALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEI 342 (676)
Q Consensus 264 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 342 (676)
+.+|+.|++.+++ ++.+|..+ ...+|++|++.++. +..++.. ..+++|+.|+++++..+..+|.. ..+++|+.
T Consensus 588 p~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~ 661 (1153)
T PLN03210 588 PPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLET 661 (1153)
T ss_pred CcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccE
Confidence 3556777776653 45566544 35667777776643 4455442 23666777777766556666542 55667777
Q ss_pred Eeecccccccccccc-cCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhh
Q 005813 343 LHIYGCRSLTYIAAV-QVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLE 421 (676)
Q Consensus 343 L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 421 (676)
|++.+|..+..+|.. ...++|+.|++.+|.+++.+|.. ..+++|+.|++++|..+.. ++.
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----------i~l~sL~~L~Lsgc~~L~~-~p~-------- 722 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG----------INLKSLYRLNLSGCSRLKS-FPD-------- 722 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc----------CCCCCCCEEeCCCCCCccc-ccc--------
Confidence 777776666665543 23355677777777766666621 1245677777777765544 221
Q ss_pred ccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcc------ccC-CCCCCCCCccEEEeecCcCcccc
Q 005813 422 SLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLV------SFP-EGGLPCAKLRTLAISNCKRLEAL 494 (676)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~------~~~-~~~~~~~~L~~L~l~~~~~~~~~ 494 (676)
++.+|+.|++.++. +..+|..+ .+++|++|.+.++.... .++ .....+++|+.|++++|..+..+
T Consensus 723 ------~~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 723 ------ISTNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred ------ccCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc
Confidence 13577888887754 45555544 46788888777653211 111 11223468899999988888888
Q ss_pred cccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccc
Q 005813 495 PKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLE 574 (676)
Q Consensus 495 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~ 574 (676)
|..++++++|+.|++++|..+..+|... .+++|+.|++++|......+ ...++|+.|++++| .+..+|..
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L~Ls~n--~i~~iP~s 864 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP-------DISTNISDLNLSRT--GIEEVPWW 864 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-------ccccccCEeECCCC--CCccChHH
Confidence 8888888999999999888888887443 68889999999987665432 23467889999987 78888765
Q ss_pred cccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccC
Q 005813 575 DKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFP 627 (676)
Q Consensus 575 ~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~ 627 (676)
...+ ++|+.|++.+|++++.+|..+..+++|+.+++++|..++.++
T Consensus 865 i~~l-------~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 IEKF-------SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HhcC-------CCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 5444 889999999999999988888888999999999998887654
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.2e-22 Score=234.53 Aligned_cols=337 Identities=21% Similarity=0.285 Sum_probs=268.6
Q ss_pred CcceEEEecCCC------CcccccccccCCC-CCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCCC
Q 005813 265 CRLEYLRLSECK------GLVKLPQSSLSLS-SLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTN 337 (676)
Q Consensus 265 ~~L~~L~l~~~~------~l~~l~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 337 (676)
++|+.|.+.... ....+|..+..++ +|+.|.+.+++ +..+|....+.+|+.|++.++. +..++... ..+
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~--~~l 633 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSK-LEKLWDGV--HSL 633 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCcc-cccccccc--ccC
Confidence 889999886532 1123566666654 69999999864 7888876678999999999987 88887766 789
Q ss_pred CCccEEeecccccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcc
Q 005813 338 SSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELP 417 (676)
Q Consensus 338 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 417 (676)
++|+.++++++..++.++.....++|+.|++.+|..+..+|.. ...+++|+.|++.+|..++. ++....
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s---------i~~L~~L~~L~L~~c~~L~~-Lp~~i~- 702 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS---------IQYLNKLEDLDMSRCENLEI-LPTGIN- 702 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh---------hhccCCCCEEeCCCCCCcCc-cCCcCC-
Confidence 9999999999888999988777889999999999998888721 23466899999999998887 333221
Q ss_pred hhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcc-----
Q 005813 418 ATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLE----- 492 (676)
Q Consensus 418 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~----- 492 (676)
.++|+.|++++|..+..+|.. .++|++|+++++ .++.+|..+ .+++|+.|.+.++....
T Consensus 703 -----------l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 703 -----------LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred -----------CCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-ccccccccc-cccccccccccccchhhccccc
Confidence 378999999999888777653 568999999988 577787644 57899999988754211
Q ss_pred -cc-cccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccc
Q 005813 493 -AL-PKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVS 570 (676)
Q Consensus 493 -~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~ 570 (676)
.+ +.....+++|+.|++++|+.+..+|..++.+++|+.|++++|......+. .+ ++++|+.|++++ |..+..
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~-c~~L~~ 840 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSG-CSRLRT 840 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCC-CCcccc
Confidence 11 11223457999999999999998998899999999999999987765542 23 789999999999 556766
Q ss_pred cccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCC-ccccceeeecCChhhHHH
Q 005813 571 FPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGL-PSSLLRLYIVGCPLIEEK 649 (676)
Q Consensus 571 i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l-~~~L~~L~i~~c~~l~~~ 649 (676)
++. .+++|+.|++.+ +.++.+|.++..+++|+.|++++|++++.+|...- .++|+.+++++|+.+++.
T Consensus 841 ~p~----------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 841 FPD----------ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccc----------cccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 665 348899999999 78999999999999999999999999999987422 689999999999988643
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.3e-23 Score=209.60 Aligned_cols=362 Identities=17% Similarity=0.204 Sum_probs=230.6
Q ss_pred CCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccc
Q 005813 204 PKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQ 283 (676)
Q Consensus 204 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~ 283 (676)
+.-+.|++++++.-. +...++-.+++|+++++.+ +.++.+|..+ +. ..+|+.|+|.+|...+.-..
T Consensus 78 ~~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~-----~~----sghl~~L~L~~N~I~sv~se 143 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNK-NELTRIPRFG-----HE----SGHLEKLDLRHNLISSVTSE 143 (873)
T ss_pred cceeeeecccccccc----CcHHHHhcCCcceeeeecc-chhhhccccc-----cc----ccceeEEeeeccccccccHH
Confidence 344668888765433 5566678888888888888 4677766531 11 15688888887643333334
Q ss_pred cccCCCCCceEeecCCCCCCCCCCccC--CCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCC-
Q 005813 284 SSLSLSSLREIEICSCHSLVSFPEVAL--PSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVP- 360 (676)
Q Consensus 284 ~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~- 360 (676)
.+.-++.|+.|||+.| .+..++...+ -.++++|+|++|. ++.+..+.| .++.+|..|.++. +.++.+|...|.
T Consensus 144 ~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~Fk~ 219 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSR-NRITTLPQRSFKR 219 (873)
T ss_pred HHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeeccc-CcccccCHHHhhh
Confidence 5667788888888875 4566655443 4678888888887 776666555 5666788888877 677777765432
Q ss_pred -CCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcC
Q 005813 361 -SSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGG 439 (676)
Q Consensus 361 -~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 439 (676)
+.|+.|++.+ +.++.+. + ..+-++ ++|+.|.+..
T Consensus 220 L~~L~~LdLnr-N~irive---~-----ltFqgL------------------------------------~Sl~nlklqr 254 (873)
T KOG4194|consen 220 LPKLESLDLNR-NRIRIVE---G-----LTFQGL------------------------------------PSLQNLKLQR 254 (873)
T ss_pred cchhhhhhccc-cceeeeh---h-----hhhcCc------------------------------------hhhhhhhhhh
Confidence 3355555544 1222111 0 011122 3444444444
Q ss_pred CCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCC
Q 005813 440 CSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSL 518 (676)
Q Consensus 440 ~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 518 (676)
|..-.---..|..+.++++|+++.| .+..+.. ..+.+.+|+.|+++.|.+...-+..++-+++|++|+++++. ++.+
T Consensus 255 N~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l 332 (873)
T KOG4194|consen 255 NDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRL 332 (873)
T ss_pred cCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccC
Confidence 3332222234555677777777776 3444333 44556777777777765444445566777788888887754 4333
Q ss_pred -CcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCC
Q 005813 519 -EEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFP 597 (676)
Q Consensus 519 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~ 597 (676)
++.+..+..|++|.+++|....... ..|..+.+|+.|++++| .+...-++. ..++..+++|+.|.+.+ +
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e----~af~~lssL~~LdLr~N--~ls~~IEDa---a~~f~gl~~LrkL~l~g-N 402 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAE----GAFVGLSSLHKLDLRSN--ELSWCIEDA---AVAFNGLPSLRKLRLTG-N 402 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHh----hHHHHhhhhhhhcCcCC--eEEEEEecc---hhhhccchhhhheeecC-c
Confidence 3446667788888888887766554 46788888888888887 655443333 34456678888888888 8
Q ss_pred Ccccchh-hcCCCCCccEEEeCCCCCccccCCCCC-ccccceeeec
Q 005813 598 NLERLSS-SIVDLQNLTELYLADCPKLKYFPEKGL-PSSLLRLYIV 641 (676)
Q Consensus 598 ~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~~~~l-~~~L~~L~i~ 641 (676)
+++.|+. .|..++.|++|++.+| .+.+|-..++ +-.|++|.+.
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred eeeecchhhhccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence 8888887 8888899999999887 4666655454 4467777644
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.2e-22 Score=204.38 Aligned_cols=341 Identities=16% Similarity=0.180 Sum_probs=243.9
Q ss_pred CccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCC--ccC
Q 005813 233 SLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPE--VAL 310 (676)
Q Consensus 233 ~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~ 310 (676)
.-+.|++++ +.+..+... .+.++ ++|+.+++..|. ++.+|.......+|+.|+|.+| .+.++.. .+.
T Consensus 79 ~t~~Ldlsn-Nkl~~id~~----~f~nl----~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSN-NKLSHIDFE----FFYNL----PNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSA 147 (873)
T ss_pred ceeeeeccc-cccccCcHH----HHhcC----Ccceeeeeccch-hhhcccccccccceeEEeeecc-ccccccHHHHHh
Confidence 446688887 466665443 34444 888888888754 7778876667777888888875 3555443 344
Q ss_pred CCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCC--CCCcEEEEeccCCccccccccccccccC
Q 005813 311 PSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVP--SSLKLLTIWHCDNIRTLTVEEGIQCSSG 388 (676)
Q Consensus 311 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 388 (676)
++.|++|+|+.|. ++.++..-+ ..-.++++|++++ +.++.+..+.|. .+|.+|.+++ +.++.+|.-.
T Consensus 148 l~alrslDLSrN~-is~i~~~sf-p~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~------- 216 (873)
T KOG4194|consen 148 LPALRSLDLSRNL-ISEIPKPSF-PAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRS------- 216 (873)
T ss_pred Hhhhhhhhhhhch-hhcccCCCC-CCCCCceEEeecc-ccccccccccccccchheeeeccc-CcccccCHHH-------
Confidence 7788888888877 666665433 3446688888887 677777655443 3455666655 3444444110
Q ss_pred CccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcc
Q 005813 389 RRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLV 468 (676)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 468 (676)
+-.+ +.|+.|++..|..-..--..|..+++|+.|.+..|...+
T Consensus 217 -Fk~L------------------------------------~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 217 -FKRL------------------------------------PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred -hhhc------------------------------------chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 0011 456666666543221112357789999999998884333
Q ss_pred ccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccc
Q 005813 469 SFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGR 548 (676)
Q Consensus 469 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 548 (676)
--...+..|.++++|++..|.....-..++.++++|+.|+++++..-..-+.....+++|+.|+++.|.+..... .
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~----~ 335 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE----G 335 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh----h
Confidence 333467789999999999976433334467899999999999987666556678899999999999999888766 4
Q ss_pred cccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccc----hhhcCCCCCccEEEeCCCCCcc
Q 005813 549 GFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERL----SSSIVDLQNLTELYLADCPKLK 624 (676)
Q Consensus 549 ~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l----~~~~~~~~~L~~L~l~~c~~l~ 624 (676)
.+..+..|++|.+++| .+..+.+.. +....+|+.|++++ +.+... ...+..+++|++|.+.+| +++
T Consensus 336 sf~~L~~Le~LnLs~N--si~~l~e~a------f~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk 405 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHN--SIDHLAEGA------FVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLK 405 (873)
T ss_pred HHHHHHHhhhhccccc--chHHHHhhH------HHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eee
Confidence 6899999999999999 888887644 55679999999999 666533 226788999999999997 899
Q ss_pred ccCCCCC--ccccceeeecCChhh
Q 005813 625 YFPEKGL--PSSLLRLYIVGCPLI 646 (676)
Q Consensus 625 ~i~~~~l--~~~L~~L~i~~c~~l 646 (676)
.||..++ .++|+.|++.+|+..
T Consensus 406 ~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ecchhhhccCcccceecCCCCcce
Confidence 9999776 699999999999843
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=2.7e-24 Score=207.21 Aligned_cols=483 Identities=22% Similarity=0.241 Sum_probs=261.1
Q ss_pred CceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC-CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCc
Q 005813 8 LEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP-SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCL 86 (676)
Q Consensus 8 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (676)
|+.|.++.+....+.+.+. .+..|.+|++++ +.+.++| +++.+..++.|+++++. ++++|.+..
T Consensus 47 l~~lils~N~l~~l~~dl~--nL~~l~vl~~~~-n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~----------- 111 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLK--NLACLTVLNVHD-NKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIG----------- 111 (565)
T ss_pred hhhhhhccCchhhccHhhh--cccceeEEEecc-chhhhCCHHHHHHHHHHHhhcccch-HhhccHHHh-----------
Confidence 4556666666655544444 566777777777 4666676 57777777777777773 777765543
Q ss_pred ceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEEEcCC
Q 005813 87 ETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFEIGGC 166 (676)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~l~~~ 166 (676)
..++|.+++++.. .+. ..|. .+.++-.|+.|+..++
T Consensus 112 ------------------------s~~~l~~l~~s~n-~~~-el~~------------------~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 112 ------------------------SLISLVKLDCSSN-ELK-ELPD------------------SIGRLLDLEDLDATNN 147 (565)
T ss_pred ------------------------hhhhhhhhhcccc-cee-ecCc------------------hHHHHhhhhhhhcccc
Confidence 3344444444332 111 1111 2333444555555554
Q ss_pred CCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCcc
Q 005813 167 KKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQ 246 (676)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 246 (676)
......... ..+..+..+.+.+++... .+++... ++.|++|+... +.++
T Consensus 148 ~i~slp~~~-------------------------~~~~~l~~l~~~~n~l~~----l~~~~i~-m~~L~~ld~~~-N~L~ 196 (565)
T KOG0472|consen 148 QISSLPEDM-------------------------VNLSKLSKLDLEGNKLKA----LPENHIA-MKRLKHLDCNS-NLLE 196 (565)
T ss_pred ccccCchHH-------------------------HHHHHHHHhhccccchhh----CCHHHHH-HHHHHhcccch-hhhh
Confidence 433332221 124555666666655443 4455444 88888888876 5677
Q ss_pred ccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCcc--CCCCccEEeeccccC
Q 005813 247 SLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVA--LPSKLRKIEIRYCDA 324 (676)
Q Consensus 247 ~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~ 324 (676)
.+|++ ++.+ ..|+.|++..+. +..+| .|..|..|.+|+++.| .++.+|+.. .++++..|+++.+.
T Consensus 197 tlP~~-----lg~l----~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNk- 263 (565)
T KOG0472|consen 197 TLPPE-----LGGL----ESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNK- 263 (565)
T ss_pred cCChh-----hcch----hhhHHHHhhhcc-cccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccc-
Confidence 77775 6555 777888888754 66677 6888888888888774 567777633 48888888888887
Q ss_pred cCcCchhhccCCCCCccEEeecccccccccccc-cCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeec
Q 005813 325 LKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAV-QVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYC 403 (676)
Q Consensus 325 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 403 (676)
++.+|..+ .-+.+|+.|++++ +.++.+|.. +-. .|+.|-+.|.+ ++.+..+ ... -+.-..+..|++-..
T Consensus 264 lke~Pde~--clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~--ii~-~gT~~vLKyLrs~~~-- 333 (565)
T KOG0472|consen 264 LKEVPDEI--CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP-LRTIRRE--IIS-KGTQEVLKYLRSKIK-- 333 (565)
T ss_pred cccCchHH--HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc-hHHHHHH--HHc-ccHHHHHHHHHHhhc--
Confidence 88888876 5677888888887 666666543 111 35555555532 2222200 000 000000111222000
Q ss_pred CCCccccccCCCcchhhhc---cccCCCCCCcceEEEcCCCChhhHHHhhccCC---ccceeeccCCCCccccCCCCCCC
Q 005813 404 CDSLTCIFSKNELPATLES---LEVGNLPPSLKSIRVGGCSKLESIAERLDNNT---SLETISIDSCKNLVSFPEGGLPC 477 (676)
Q Consensus 404 c~~l~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~L~~L~l~~~~~l~~~~~~~~~~ 477 (676)
|+.+..--.+.+-.+.... ..... .-+.+.|++++- .+..+|....... -....+++.| .+.++|.....+
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~-~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~l 410 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYA-IITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVEL 410 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhh-hhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhHHH
Confidence 1111110000000000000 00000 123444444442 2233332221112 2455555555 455555544444
Q ss_pred CCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhcccccccccccc
Q 005813 478 AKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLR 557 (676)
Q Consensus 478 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 557 (676)
..+.+.-+..++.+..+|..++.+++|..|+++++ .+..+|.+++.+-.|+.|+++.|..-..+. .+..+..|+
T Consensus 411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~-----~~y~lq~lE 484 (565)
T KOG0472|consen 411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPE-----CLYELQTLE 484 (565)
T ss_pred HHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchH-----HHhhHHHHH
Confidence 44444444444445555555666677777777663 356666666666667777777764433222 233444455
Q ss_pred EEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCC
Q 005813 558 RLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 558 ~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 621 (676)
.+-.++| .+..++... .....+|+.|++.+ +.+..+|..++++++|++|+++++|
T Consensus 485 tllas~n--qi~~vd~~~------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 485 TLLASNN--QIGSVDPSG------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHhccc--cccccChHH------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 5555555 666665542 12336777777777 6777777777777777777777765
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=2.6e-22 Score=203.32 Aligned_cols=365 Identities=18% Similarity=0.237 Sum_probs=189.1
Q ss_pred CCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccc
Q 005813 204 PKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQ 283 (676)
Q Consensus 204 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~ 283 (676)
|-++-.+++++....+. +|.+ ...+++++-|.+.. .++..+|.+ ++.+ .+|++|.+.+|. +..+.-
T Consensus 7 pFVrGvDfsgNDFsg~~--FP~~-v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN~-L~~vhG 72 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDR--FPHD-VEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHNQ-LISVHG 72 (1255)
T ss_pred ceeecccccCCcCCCCc--Cchh-HHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhhh-hHhhhh
Confidence 44445555555443321 3333 35666677777766 466666654 5555 666777776653 333333
Q ss_pred cccCCCCCceEeecCCCC-CCCCCC-ccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCC-
Q 005813 284 SSLSLSSLREIEICSCHS-LVSFPE-VALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVP- 360 (676)
Q Consensus 284 ~~~~l~~L~~L~l~~~~~-l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~- 360 (676)
.+..++.|+.+.+++|+. -..+|. +..+..|..|++++|. ++..|... .+-+++-.|++++ +++..+|..-+.
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~-N~IetIPn~lfin 148 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSY-NNIETIPNSLFIN 148 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEccc-CccccCCchHHHh
Confidence 455666666666666541 123444 3336666777777666 66666655 5556666666666 555555543221
Q ss_pred -CCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcC
Q 005813 361 -SSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGG 439 (676)
Q Consensus 361 -~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 439 (676)
+-|-.|+++. +.++.+|+... .+..|++|.+++.+-.. +....+|. ..+|+.|.+++
T Consensus 149 LtDLLfLDLS~-NrLe~LPPQ~R---------RL~~LqtL~Ls~NPL~h--fQLrQLPs----------mtsL~vLhms~ 206 (1255)
T KOG0444|consen 149 LTDLLFLDLSN-NRLEMLPPQIR---------RLSMLQTLKLSNNPLNH--FQLRQLPS----------MTSLSVLHMSN 206 (1255)
T ss_pred hHhHhhhcccc-chhhhcCHHHH---------HHhhhhhhhcCCChhhH--HHHhcCcc----------chhhhhhhccc
Confidence 2233444444 33444442210 11134444443321000 00000100 23455555554
Q ss_pred CCCh-hhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCC
Q 005813 440 CSKL-ESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSL 518 (676)
Q Consensus 440 ~~~l-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 518 (676)
.... ..+|.++..+.+|+.+|++.| ++..+|.....+++|+.|++++|. ++.+........+|++|.++.+ .++.+
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN-QLt~L 283 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN-QLTVL 283 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccc-hhccc
Confidence 3322 345555666666666666655 555566666666666666666643 3444334445556666666663 45556
Q ss_pred CcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCC
Q 005813 519 EEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPN 598 (676)
Q Consensus 519 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~ 598 (676)
|.....+++|+.|.+.+|+..-...+ .+++.+.+|+.+...+| .++-+|++.- -+..|+.|.+.. +.
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiP---SGIGKL~~Levf~aanN--~LElVPEglc-------RC~kL~kL~L~~-Nr 350 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIP---SGIGKLIQLEVFHAANN--KLELVPEGLC-------RCVKLQKLKLDH-NR 350 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCc---cchhhhhhhHHHHhhcc--ccccCchhhh-------hhHHHHHhcccc-cc
Confidence 65556666666666666554433332 25555666666666555 5555554331 224555555554 55
Q ss_pred cccchhhcCCCCCccEEEeCCCCCcc
Q 005813 599 LERLSSSIVDLQNLTELYLADCPKLK 624 (676)
Q Consensus 599 l~~l~~~~~~~~~L~~L~l~~c~~l~ 624 (676)
+..+|+++.-+|-|+.|++++||++.
T Consensus 351 LiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 351 LITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred eeechhhhhhcCCcceeeccCCcCcc
Confidence 55555555555555555555555543
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=5.4e-23 Score=217.85 Aligned_cols=243 Identities=23% Similarity=0.269 Sum_probs=150.1
Q ss_pred cCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCC-ccCCCCccEEeeccccCcCcCchhhccCCCCCcc
Q 005813 263 LSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPE-VALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLE 341 (676)
Q Consensus 263 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 341 (676)
.+.+|++++++.+ .+..+|+++..|.+|+.++..+|. +..+|. +....+|+.|.+..|+ ++.+|... ..++.|+
T Consensus 239 ~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~ 313 (1081)
T KOG0618|consen 239 VPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLR 313 (1081)
T ss_pred ccccceeeecchh-hhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--cccceee
Confidence 3466777777774 356667777777777777777654 344444 3336677777777776 66666654 5567777
Q ss_pred EEeecccccccccccccCCC---CCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcch
Q 005813 342 ILHIYGCRSLTYIAAVQVPS---SLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPA 418 (676)
Q Consensus 342 ~L~l~~c~~l~~~~~~~~~~---~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 418 (676)
+|++.. +++..+|...+.. +++.+..+. ..+..++ . +.+
T Consensus 314 tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp---------------------------~----~~e----- 355 (1081)
T KOG0618|consen 314 TLDLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLP---------------------------S----YEE----- 355 (1081)
T ss_pred eeeehh-ccccccchHHHhhhhHHHHHHhhhh-ccccccc---------------------------c----ccc-----
Confidence 777766 5566665532211 011111111 1111111 0 111
Q ss_pred hhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCccccccc
Q 005813 419 TLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKG 497 (676)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 497 (676)
+..+.|+.|.+.+|...+.....+.++++||.|++++| .+.++|. .+.+++.|+.|+++|| .++.+|..
T Consensus 356 --------~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~t 425 (1081)
T KOG0618|consen 356 --------NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDT 425 (1081)
T ss_pred --------hhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHH
Confidence 11245677777776666666666777888888888887 6777766 4556778888888884 47777777
Q ss_pred ccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 498 LHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 498 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
+..++.|++|...+| .+..+| ++..++.|+.+|++.|........+ ....++|++|+++||
T Consensus 426 va~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~----~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPE----ALPSPNLKYLDLSGN 486 (1081)
T ss_pred HHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhh----hCCCcccceeeccCC
Confidence 777788888877664 455667 6777778888888777766554422 112267777777776
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.1e-22 Score=213.50 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=41.5
Q ss_pred CCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccc
Q 005813 287 SLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIA 355 (676)
Q Consensus 287 ~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 355 (676)
.-++|+.|+..+|+.. .........+|++++++++. +..+| .|+ ..+.+|+.+.+.. +.++.++
T Consensus 217 ~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~-l~~lp-~wi-~~~~nle~l~~n~-N~l~~lp 280 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNN-LSNLP-EWI-GACANLEALNANH-NRLVALP 280 (1081)
T ss_pred cCcchheeeeccCcce-eeccccccccceeeecchhh-hhcch-HHH-HhcccceEecccc-hhHHhhH
Confidence 3456777777776643 33333346778888888877 77777 444 6778888887766 4454444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=7.6e-23 Score=197.24 Aligned_cols=239 Identities=25% Similarity=0.248 Sum_probs=154.3
Q ss_pred CCCCCCCceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC-CcCCCCccceEeeecccCceEeCCccCCCCCC
Q 005813 2 LKPHENLEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP-SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSP 80 (676)
Q Consensus 2 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 80 (676)
+++...|.+|++..+...++|+.++ .+..++.|+++. +.+..+| .++.+..|+.|+.+.+. +++++.+++
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig--~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~----- 134 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIG--ELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIG----- 134 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHH--HHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccccc-eeecCchHH-----
Confidence 4567788999999999999999998 789999999988 5888999 79999999999999994 888887643
Q ss_pred CCCCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCCC---CCCccEEEEcCCcC--hhhcccCC
Q 005813 81 IPFPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPEH---LPALEMLAIEGCEE--LLVSVASL 155 (676)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~~L~~L~i~~~~~--~~~~~~~~ 155 (676)
.+-.|+.|...+.. ....... +..+..|..+++.+. +++ ..|.. .+.|++|+...+.. +...++.+
T Consensus 135 -~~~~l~dl~~~~N~-i~slp~~-----~~~~~~l~~l~~~~n-~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l 205 (565)
T KOG0472|consen 135 -RLLDLEDLDATNNQ-ISSLPED-----MVNLSKLSKLDLEGN-KLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGGL 205 (565)
T ss_pred -HHhhhhhhhccccc-cccCchH-----HHHHHHHHHhhcccc-chh-hCCHHHHHHHHHHhcccchhhhhcCChhhcch
Confidence 25555555544321 1111111 114556666666553 333 23321 34455554433321 11224556
Q ss_pred CceeEEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCcc
Q 005813 156 PALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLK 235 (676)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 235 (676)
.+|+.|++..+.....+ -+.++..|+++++..+..-. .+.+...++++|.
T Consensus 206 ~~L~~LyL~~Nki~~lP--------------------------ef~gcs~L~Elh~g~N~i~~----lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLP--------------------------EFPGCSLLKELHVGENQIEM----LPAEHLKHLNSLL 255 (565)
T ss_pred hhhHHHHhhhcccccCC--------------------------CCCccHHHHHHHhcccHHHh----hHHHHhcccccce
Confidence 66666666666544322 13446677777776654433 5666667777777
Q ss_pred EEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCC
Q 005813 236 RLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCH 300 (676)
Q Consensus 236 ~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~ 300 (676)
.|++++ ++++.+|.+ +--+ .+|++|+++++. ++.+|.+++++ +|+.|.+.||+
T Consensus 256 vLDLRd-Nklke~Pde-----~clL----rsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 256 VLDLRD-NKLKEVPDE-----ICLL----RSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeeccc-cccccCchH-----HHHh----hhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 888877 567777765 4334 677777777754 66677777777 77777777765
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=6e-22 Score=200.70 Aligned_cols=338 Identities=17% Similarity=0.241 Sum_probs=233.7
Q ss_pred hhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCc-ccccccccCCCCCceEeecCCCCCCCC
Q 005813 227 LLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGL-VKLPQSSLSLSSLREIEICSCHSLVSF 305 (676)
Q Consensus 227 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~~~~l~~~ 305 (676)
-+..+.+|++|.+.. ++++.+.++ +.++ |.|+.+.+..|..- ..+|.-+-++.-|..|++++| ++...
T Consensus 50 EL~~lqkLEHLs~~H-N~L~~vhGE-----Ls~L----p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~Ev 118 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAH-NQLISVHGE-----LSDL----PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREV 118 (1255)
T ss_pred HHHHHhhhhhhhhhh-hhhHhhhhh-----hccc----hhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhc
Confidence 346666666666666 345555443 4455 66666666665322 226666666777777777764 35555
Q ss_pred CCc-cCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccc-cCCCCCcEEEEeccC----Ccccccc
Q 005813 306 PEV-ALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAV-QVPSSLKLLTIWHCD----NIRTLTV 379 (676)
Q Consensus 306 ~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~----~l~~l~~ 379 (676)
|.. ....++-.|++++|. ++.+|...+ .+++.|-.|++++ +.+..+|.. ....+|++|++++.+ .++.+|
T Consensus 119 P~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP- 194 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP- 194 (1255)
T ss_pred chhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-
Confidence 542 225666667777666 666666555 5666666666666 556655543 233456666666644 223333
Q ss_pred ccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCcccee
Q 005813 380 EEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETI 459 (676)
Q Consensus 380 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 459 (676)
+..+|+.|++++..+.-. .+|+.+..+ .+|..++++.+ .+...|..+.++++|+.|
T Consensus 195 ------------smtsL~vLhms~TqRTl~-----N~Ptsld~l------~NL~dvDlS~N-~Lp~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 195 ------------SMTSLSVLHMSNTQRTLD-----NIPTSLDDL------HNLRDVDLSEN-NLPIVPECLYKLRNLRRL 250 (1255)
T ss_pred ------------cchhhhhhhcccccchhh-----cCCCchhhh------hhhhhcccccc-CCCcchHHHhhhhhhhee
Confidence 344677777777664443 222222222 67888899874 577889999999999999
Q ss_pred eccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCC-CCCCCcCCCCCCccceeeccCcch
Q 005813 460 SIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGA-LPSLEEEDDLPTNLQSLNIWGNME 538 (676)
Q Consensus 460 ~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~L~~L~l~~~~~ 538 (676)
++++| .++.+........+|++|+++.|+ ++.+|..+..+++|+.|++.++.. ...+|..++.+.+|+.+...+|..
T Consensus 251 NLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 251 NLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred ccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 99999 788887777778899999999965 788999999999999999988643 467888999999999999999987
Q ss_pred hhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeC
Q 005813 539 IWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLA 618 (676)
Q Consensus 539 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~ 618 (676)
.-++. ++..|..|+.|.+.+| ++..+|+... .++.|+.|+++..+++.--|..-..-.+|+.-+|+
T Consensus 329 ElVPE-----glcRC~kL~kL~L~~N--rLiTLPeaIH-------lL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 329 ELVPE-----GLCRCVKLQKLKLDHN--RLITLPEAIH-------LLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccCch-----hhhhhHHHHHhccccc--ceeechhhhh-------hcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 66543 7999999999999999 8999887653 45899999999988776544322222556655554
Q ss_pred C
Q 005813 619 D 619 (676)
Q Consensus 619 ~ 619 (676)
.
T Consensus 395 F 395 (1255)
T KOG0444|consen 395 F 395 (1255)
T ss_pred e
Confidence 3
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.7e-14 Score=157.18 Aligned_cols=256 Identities=31% Similarity=0.421 Sum_probs=158.3
Q ss_pred CcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCCCCCccEEe
Q 005813 265 CRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILH 344 (676)
Q Consensus 265 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 344 (676)
.+-..|+++++ .++.+|..+. ++|+.|++.+| .++.+|. .+++|++|++++|. ++.+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence 44667788776 4667776554 37888888875 4666664 35778888888875 6666642 35677777
Q ss_pred ecccccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccc
Q 005813 345 IYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLE 424 (676)
Q Consensus 345 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 424 (676)
+.+ +.++.++. .+++|+.|++.++ .++.++.
T Consensus 269 Ls~-N~L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP~--------------------------------------------- 299 (788)
T PRK15387 269 IFS-NPLTHLPA--LPSGLCKLWIFGN-QLTSLPV--------------------------------------------- 299 (788)
T ss_pred ccC-Cchhhhhh--chhhcCEEECcCC-ccccccc---------------------------------------------
Confidence 776 34555553 3445666666653 3444331
Q ss_pred cCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCc
Q 005813 425 VGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSL 504 (676)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 504 (676)
.|++|+.|++++|. +..+|.. ..+|+.|++++| .++.+|.. ..+|+.|++++|. +..+|.. .++|
T Consensus 300 ---~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L 364 (788)
T PRK15387 300 ---LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PSEL 364 (788)
T ss_pred ---cccccceeECCCCc-cccCCCC---cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---Cccc
Confidence 02445555555542 2223321 234556666665 44555431 1366777776643 4445532 2456
Q ss_pred cceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCC
Q 005813 505 QQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPL 584 (676)
Q Consensus 505 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~ 584 (676)
+.|++++| .+..+|. .+++|+.|++++|.....+. ..++|+.|++++| .+..+|. .
T Consensus 365 ~~L~Ls~N-~L~~LP~---l~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N--~LssIP~----------l 420 (788)
T PRK15387 365 YKLWAYNN-RLTSLPA---LPSGLKELIVSGNRLTSLPV--------LPSELKELMVSGN--RLTSLPM----------L 420 (788)
T ss_pred ceehhhcc-ccccCcc---cccccceEEecCCcccCCCC--------cccCCCEEEccCC--cCCCCCc----------c
Confidence 66666664 3444552 23567888888776553221 1357888888887 7777764 2
Q ss_pred CCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCC
Q 005813 585 PASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 585 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 621 (676)
+.+|+.|++++ +.++.+|..+..+++|+.|++++|+
T Consensus 421 ~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 36788888888 7888888888888999999999885
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=9.9e-13 Score=145.00 Aligned_cols=255 Identities=24% Similarity=0.240 Sum_probs=176.7
Q ss_pred CCCceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCCCcCCCCccceEeeecccCceEeCCccCCCCCCCCCCC
Q 005813 6 ENLEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLPSVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPC 85 (676)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 85 (676)
.+-..|+++++....+|..++ .+|+.|.+.+ ++++.+|.. .++|++|++++| .++.+|.. .++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~-N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l---------p~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPD-NNLTSLPAL--PPELRTLEVSGN-QLTSLPVL---------PPG 263 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh----cCCCEEEccC-CcCCCCCCC--CCCCcEEEecCC-ccCcccCc---------ccc
Confidence 345678999999888998776 5899999988 588888863 578999999999 58888732 568
Q ss_pred cceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEEEcC
Q 005813 86 LETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFEIGG 165 (676)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~l~~ 165 (676)
|++|.+.++. +..+.. ...+|+.|++.++ .+. .+|...++|+.|++++|.... ...-...|+.|++.+
T Consensus 264 L~~L~Ls~N~-L~~Lp~--------lp~~L~~L~Ls~N-~Lt-~LP~~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~ 331 (788)
T PRK15387 264 LLELSIFSNP-LTHLPA--------LPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYN 331 (788)
T ss_pred cceeeccCCc-hhhhhh--------chhhcCEEECcCC-ccc-cccccccccceeECCCCcccc-CCCCccccccccccc
Confidence 8888887653 332221 3457888888876 455 567777888888888874332 112234677777777
Q ss_pred CCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCc
Q 005813 166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKI 245 (676)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 245 (676)
|....... ...+|+.|+++++.... +|. ...+|+.|++.+ +.+
T Consensus 332 N~L~~LP~----------------------------lp~~Lq~LdLS~N~Ls~----LP~----lp~~L~~L~Ls~-N~L 374 (788)
T PRK15387 332 NQLTSLPT----------------------------LPSGLQELSVSDNQLAS----LPT----LPSELYKLWAYN-NRL 374 (788)
T ss_pred Cccccccc----------------------------cccccceEecCCCccCC----CCC----CCcccceehhhc-ccc
Confidence 65432110 11478888888865432 332 235677888877 456
Q ss_pred cccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCc
Q 005813 246 QSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDAL 325 (676)
Q Consensus 246 ~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l 325 (676)
+.++.. +.+|+.|++++|. +..+|.. .++|+.|++++|. +..+|. .+.+|+.|++++|. +
T Consensus 375 ~~LP~l------------~~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~-LssIP~--l~~~L~~L~Ls~Nq-L 434 (788)
T PRK15387 375 TSLPAL------------PSGLKELIVSGNR-LTSLPVL---PSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-L 434 (788)
T ss_pred ccCccc------------ccccceEEecCCc-ccCCCCc---ccCCCEEEccCCc-CCCCCc--chhhhhhhhhccCc-c
Confidence 665532 2678889998864 5566643 3578888998864 666764 34578888888887 7
Q ss_pred CcCchhhccCCCCCccEEeeccc
Q 005813 326 KSLPEAWMCDTNSSLEILHIYGC 348 (676)
Q Consensus 326 ~~~~~~~~~~~l~~L~~L~l~~c 348 (676)
+.+|..+ ..+++|+.++++++
T Consensus 435 t~LP~sl--~~L~~L~~LdLs~N 455 (788)
T PRK15387 435 TRLPESL--IHLSSETTVNLEGN 455 (788)
T ss_pred cccChHH--hhccCCCeEECCCC
Confidence 7888776 67888888888873
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=2.4e-14 Score=122.99 Aligned_cols=181 Identities=23% Similarity=0.308 Sum_probs=125.0
Q ss_pred cCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCcccee
Q 005813 452 NNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSL 531 (676)
Q Consensus 452 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 531 (676)
.+.+++.|.++++ .++.+|+.+..+.+|+.|++++++ ++.+|..++.+++|+.|.++- ..+..+|..++.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence 3455666666666 566666666666777777776643 566666677777777777664 3455666677777777777
Q ss_pred eccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCC
Q 005813 532 NIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQN 611 (676)
Q Consensus 532 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 611 (676)
|+..|+......+ ..|..++.|+.|++++| ..+.+|.+.+++ ++|+.|.+++ +.+-++|..++.+++
T Consensus 108 dltynnl~e~~lp---gnff~m~tlralyl~dn--dfe~lp~dvg~l-------t~lqil~lrd-ndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 108 DLTYNNLNENSLP---GNFFYMTTLRALYLGDN--DFEILPPDVGKL-------TNLQILSLRD-NDLLSLPKEIGDLTR 174 (264)
T ss_pred hccccccccccCC---cchhHHHHHHHHHhcCC--CcccCChhhhhh-------cceeEEeecc-CchhhCcHHHHHHHH
Confidence 7776665443332 35667788888888887 677777777666 8888888888 788888888899999
Q ss_pred ccEEEeCCCCCccccCCCC----CccccceeeecCChhhHHH
Q 005813 612 LTELYLADCPKLKYFPEKG----LPSSLLRLYIVGCPLIEEK 649 (676)
Q Consensus 612 L~~L~l~~c~~l~~i~~~~----l~~~L~~L~i~~c~~l~~~ 649 (676)
|++|.|.++ +++-+|.+- +..+-+++++.++|.+..+
T Consensus 175 lrelhiqgn-rl~vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 175 LRELHIQGN-RLTVLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHHHhcccc-eeeecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 999999997 677777631 1234455566666655443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=3.9e-12 Score=141.30 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=40.3
Q ss_pred CcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCCCCCccEEe
Q 005813 265 CRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILH 344 (676)
Q Consensus 265 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 344 (676)
.+.+.|+++++ .++.+|..+. ++|+.|++++| .+..+|... ..+|+.|++++|. ++.+|..+ ..+|+.|+
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~l----~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNN-ELKSLPENL-QGNIKTLYANSNQ-LTSIPATL----PDTIQEME 247 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCC-CCCcCChhh-ccCCCEEECCCCc-cccCChhh----hccccEEE
Confidence 45667777664 3555665432 35677777664 355555422 3466666666665 55555432 13455555
Q ss_pred ecc
Q 005813 345 IYG 347 (676)
Q Consensus 345 l~~ 347 (676)
+++
T Consensus 248 Ls~ 250 (754)
T PRK15370 248 LSI 250 (754)
T ss_pred CcC
Confidence 555
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=8.1e-12 Score=138.75 Aligned_cols=245 Identities=25% Similarity=0.359 Sum_probs=129.7
Q ss_pred CCCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCCCCcEEEE
Q 005813 289 SSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTI 368 (676)
Q Consensus 289 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 368 (676)
.+...|+++++ .++.+|.. ..+.|+.|++++|. ++.+|..+ .++|+.|++++ +.++.++.. ++.+|+.|++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~-N~LtsLP~~-l~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLPENL----QGNIKTLYANS-NQLTSIPAT-LPDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCChhh----ccCCCEEECCC-CccccCChh-hhccccEEEC
Confidence 35678888874 56777753 25689999999886 77887754 25788888887 346655432 2334555555
Q ss_pred eccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHH
Q 005813 369 WHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAE 448 (676)
Q Consensus 369 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 448 (676)
+++. +..+| . .++.+|+.|++++| .+..+|.
T Consensus 249 s~N~-L~~LP----------------------------------~-------------~l~s~L~~L~Ls~N-~L~~LP~ 279 (754)
T PRK15370 249 SINR-ITELP----------------------------------E-------------RLPSALQSLDLFHN-KISCLPE 279 (754)
T ss_pred cCCc-cCcCC----------------------------------h-------------hHhCCCCEEECcCC-ccCcccc
Confidence 5431 22222 0 01245666666654 3334444
Q ss_pred hhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCcc
Q 005813 449 RLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNL 528 (676)
Q Consensus 449 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L 528 (676)
.+ .++|+.|++++| .++.+|..+. ++|+.|++++|. +..+|..+ .++|+.|.+++|. ++.+|. ..+++|
T Consensus 280 ~l--~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~--~l~~sL 348 (754)
T PRK15370 280 NL--PEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGLKTLEAGENA-LTSLPA--SLPPEL 348 (754)
T ss_pred cc--CCCCcEEECCCC-ccccCcccch--hhHHHHHhcCCc-cccCCccc--cccceeccccCCc-cccCCh--hhcCcc
Confidence 33 246777777666 4555554321 356666666643 33344322 2456666666653 334442 223566
Q ss_pred ceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhh---
Q 005813 529 QSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSS--- 605 (676)
Q Consensus 529 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--- 605 (676)
+.|++++|.....+. .+ .++|+.|+|++| .+..+|... +.+|+.|++++ +++..+|..
T Consensus 349 ~~L~Ls~N~L~~LP~-----~l--p~~L~~LdLs~N--~Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~ 409 (754)
T PRK15370 349 QVLDVSKNQITVLPE-----TL--PPTITTLDVSRN--ALTNLPENL---------PAALQIMQASR-NNLVRLPESLPH 409 (754)
T ss_pred cEEECCCCCCCcCCh-----hh--cCCcCEEECCCC--cCCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHH
Confidence 666666665432211 11 245566666665 455554321 23455556555 455554432
Q ss_pred -cCCCCCccEEEeCCCC
Q 005813 606 -IVDLQNLTELYLADCP 621 (676)
Q Consensus 606 -~~~~~~L~~L~l~~c~ 621 (676)
...++++..|++.+|+
T Consensus 410 ~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 410 FRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HhhcCCCccEEEeeCCC
Confidence 2233555556665554
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.26 E-value=2.5e-13 Score=133.05 Aligned_cols=211 Identities=14% Similarity=0.229 Sum_probs=101.4
Q ss_pred cCCcccEEEEccCCCccc----ccCCCCCCccEEEEcCCcChhhc-----ccCCCceeEEEEcCCCCeeEEeeccccCCC
Q 005813 111 WFPKLRELHIIRCSKLQG----TFPEHLPALEMLAIEGCEELLVS-----VASLPALCKFEIGGCKKVVWRSATDHLGSQ 181 (676)
Q Consensus 111 ~~~~L~~L~l~~c~~l~~----~~~~~~~~L~~L~i~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 181 (676)
.+|++++|.+.+|.++++ .+...++.|+++++..|..++.. ...|++|+++.++.|+.+.....
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv------- 234 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGV------- 234 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcc-------
Confidence 455666665555554442 12234555555555555554433 22466666666666665543111
Q ss_pred cceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHh
Q 005813 182 NSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLC 261 (676)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~ 261 (676)
....+++..++++.+.||..... +........+..+.++++..|..+++.. +-..+
T Consensus 235 ---------------~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~-------~~~i~ 290 (483)
T KOG4341|consen 235 ---------------QALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDED-------LWLIA 290 (483)
T ss_pred ---------------hHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchH-------HHHHh
Confidence 12334455566666666665543 1223333455556666666665555532 23333
Q ss_pred hcCCcceEEEecCCCCcccc--cccccCCCCCceEeecCCCCCCCCCC---ccCCCCccEEeeccccCcCcCchhhccCC
Q 005813 262 ELSCRLEYLRLSECKGLVKL--PQSSLSLSSLREIEICSCHSLVSFPE---VALPSKLRKIEIRYCDALKSLPEAWMCDT 336 (676)
Q Consensus 262 ~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 336 (676)
..+..|+.|+.++|..+.+. .....++.+|+.|.+.+|..+.+... ....+.|+.+++.+|..+.+-...-.+.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 44566666666666555442 22334556666666666654433222 11244555555555443332211111134
Q ss_pred CCCccEEeeccccccc
Q 005813 337 NSSLEILHIYGCRSLT 352 (676)
Q Consensus 337 l~~L~~L~l~~c~~l~ 352 (676)
++.|+.+.++.|..++
T Consensus 371 C~~lr~lslshce~it 386 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELIT 386 (483)
T ss_pred CchhccCChhhhhhhh
Confidence 4444444444444333
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.25 E-value=9.7e-14 Score=135.90 Aligned_cols=284 Identities=18% Similarity=0.256 Sum_probs=122.1
Q ss_pred ccceEeeecccCceEeCCccCCCCCCCCCCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCccc----cc
Q 005813 55 SLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQG----TF 130 (676)
Q Consensus 55 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~----~~ 130 (676)
.||.|.++||..+..-+...+ ..++|+++.|.+.+|..+.+-.....+. .|++|+.|++..|+.++. ..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~----~~~CpnIehL~l~gc~~iTd~s~~sla~---~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTF----ASNCPNIEHLALYGCKKITDSSLLSLAR---YCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHH----hhhCCchhhhhhhcceeccHHHHHHHHH---hcchhhhhhhcccchhHHHHHHHH
Confidence 455555555554333222211 2345555555555555444433333333 455555555555555542 12
Q ss_pred CCCCCCccEEEEcCCcChhh-----cccCCCceeEEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCC
Q 005813 131 PEHLPALEMLAIEGCEELLV-----SVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPK 205 (676)
Q Consensus 131 ~~~~~~L~~L~i~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (676)
.+.+++|+++++++|..+.. -...+..++.+...+|.+........ +...++.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~----------------------~~~~~~~ 269 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK----------------------AAAYCLE 269 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH----------------------HhccChH
Confidence 34455555555555554433 13334455555555555443322111 1122334
Q ss_pred cceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccccc--c
Q 005813 206 LEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLP--Q 283 (676)
Q Consensus 206 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~--~ 283 (676)
+.++++.+|..+++. ....+...+..|++|+.++|..+++.. +..|....++|+.+-+.+|..+++.- .
T Consensus 270 i~~lnl~~c~~lTD~--~~~~i~~~c~~lq~l~~s~~t~~~d~~-------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDE--DLWLIACGCHALQVLCYSSCTDITDEV-------LWALGQHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred hhccchhhhccccch--HHHHHhhhhhHhhhhcccCCCCCchHH-------HHHHhcCCCceEEEeccccchhhhhhhhh
Confidence 444445555444431 122233344455555555554443322 23333334555555555554443321 1
Q ss_pred cccCCCCCceEeecCCCCCCCCC---CccCCCCccEEeeccccCcCcCchhhc---cCCCCCccEEeecccccccccccc
Q 005813 284 SSLSLSSLREIEICSCHSLVSFP---EVALPSKLRKIEIRYCDALKSLPEAWM---CDTNSSLEILHIYGCRSLTYIAAV 357 (676)
Q Consensus 284 ~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~l~~L~~L~l~~c~~l~~~~~~ 357 (676)
.-.+++.|+.+++.+|....+.. ....++.||.+.+++|..+++.....+ ...+..|+.+.+.+|+.+++-...
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 12344555555555544322211 111245555555555544433311100 023344455555555444432211
Q ss_pred --cCCCCCcEEEEeccCCccc
Q 005813 358 --QVPSSLKLLTIWHCDNIRT 376 (676)
Q Consensus 358 --~~~~~L~~L~l~~~~~l~~ 376 (676)
...++|+.+++.+|..+..
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred HHhhCcccceeeeechhhhhh
Confidence 1123455555555554443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=6.6e-13 Score=114.18 Aligned_cols=162 Identities=22% Similarity=0.306 Sum_probs=138.7
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++++.|.++++ .+..+|..+..+.+|+.|.+.++ .++++|..+..+++|+.|++.. +.+..+|.+|+.+|.|+.|++
T Consensus 33 s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence 67888888885 46667777888999999999988 8999999999999999999987 457888999999999999999
Q ss_pred eccCC-CCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCc
Q 005813 510 GIGGA-LPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASL 588 (676)
Q Consensus 510 ~~c~~-l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L 588 (676)
.++.. -..+|..+..+..|+.|++++|.....++ .++++++|+.|.+++| .+-++|.+.+.+ ..|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-----dvg~lt~lqil~lrdn--dll~lpkeig~l-------t~l 175 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-----DVGKLTNLQILSLRDN--DLLSLPKEIGDL-------TRL 175 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCCh-----hhhhhcceeEEeeccC--chhhCcHHHHHH-------HHH
Confidence 98654 35678788889999999999998877665 5789999999999998 888888887666 899
Q ss_pred cEEeecCCCCcccchhhcCCC
Q 005813 589 TSLGISNFPNLERLSSSIVDL 609 (676)
Q Consensus 589 ~~L~l~~c~~l~~l~~~~~~~ 609 (676)
+.|++.+ +.+..+|..+..+
T Consensus 176 relhiqg-nrl~vlppel~~l 195 (264)
T KOG0617|consen 176 RELHIQG-NRLTVLPPELANL 195 (264)
T ss_pred HHHhccc-ceeeecChhhhhh
Confidence 9999999 8999998655433
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=1.3e-12 Score=127.00 Aligned_cols=86 Identities=24% Similarity=0.304 Sum_probs=55.0
Q ss_pred cccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCCCccccC
Q 005813 549 GFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCPKLKYFP 627 (676)
Q Consensus 549 ~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~ 627 (676)
.|+.+++|+.|++++| .+..|.+.+ |.....++.|.+.. ++++.+.. .|..+..|+.|++.+| +|+.+.
T Consensus 269 cf~~L~~L~~lnlsnN--~i~~i~~~a------Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~ 338 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNN--KITRIEDGA------FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDN-QITTVA 338 (498)
T ss_pred HHhhcccceEeccCCC--ccchhhhhh------hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCC-eeEEEe
Confidence 4667777777777776 666665543 34456677777777 66766665 5567777777777776 566655
Q ss_pred CCCC--ccccceeeecCCh
Q 005813 628 EKGL--PSSLLRLYIVGCP 644 (676)
Q Consensus 628 ~~~l--~~~L~~L~i~~c~ 644 (676)
...+ ..+|.+|++-.||
T Consensus 339 ~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cccccccceeeeeehccCc
Confidence 5444 4566666666655
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=4.5e-11 Score=135.00 Aligned_cols=80 Identities=26% Similarity=0.294 Sum_probs=45.7
Q ss_pred CcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCc-cCCCCccEEeeccccCcCcCchhhccCCCCCccEE
Q 005813 265 CRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEV-ALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEIL 343 (676)
Q Consensus 265 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 343 (676)
+.|+.|++++|..+..+|..++.+.+|++|+++++ .+..+|.. ..+..|.+|++..+.....++... ..+++|+.|
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L 647 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVL 647 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchh--hhcccccEE
Confidence 66666666666666666666666666666666663 34455542 235566666666655444443332 346666666
Q ss_pred eecc
Q 005813 344 HIYG 347 (676)
Q Consensus 344 ~l~~ 347 (676)
.+..
T Consensus 648 ~l~~ 651 (889)
T KOG4658|consen 648 RLPR 651 (889)
T ss_pred Eeec
Confidence 6554
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.04 E-value=4.3e-11 Score=123.12 Aligned_cols=71 Identities=20% Similarity=0.122 Sum_probs=35.2
Q ss_pred hhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCc------ccccccccCCCCCceEeecCC
Q 005813 226 ELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGL------VKLPQSSLSLSSLREIEICSC 299 (676)
Q Consensus 226 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l------~~l~~~~~~l~~L~~L~l~~~ 299 (676)
..+..+.+|+.|++++|. ++.-....+.+.+ ...++|++++++++... ..++..+..+++|++|++++|
T Consensus 17 ~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l----~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNT-LGEEAAKALASAL----RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHhhccEEeecCCC-CcHHHHHHHHHHH----hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 344555667777777753 3322111111122 22366777777665322 112234445666666666665
Q ss_pred CC
Q 005813 300 HS 301 (676)
Q Consensus 300 ~~ 301 (676)
..
T Consensus 92 ~~ 93 (319)
T cd00116 92 AL 93 (319)
T ss_pred CC
Confidence 43
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.97 E-value=6.2e-11 Score=121.92 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=50.1
Q ss_pred HHhhccCCccceeeccCCCCccccCCCCCCC---CCccEEEeecCcCcc----cccccccCC-CCccceeeeccCCCC--
Q 005813 447 AERLDNNTSLETISIDSCKNLVSFPEGGLPC---AKLRTLAISNCKRLE----ALPKGLHNL-TSLQQLTIGIGGALP-- 516 (676)
Q Consensus 447 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~c~~l~-- 516 (676)
+..+..+++|+.|++++|......+..+..+ ++|+.|++++|.... .+...+..+ ++|+.|++++|....
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 3344445566666665553322222211112 236666666554321 111123344 556666666554221
Q ss_pred --CCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 517 --SLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 517 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
.+...+..+++|++|++++|.............+..+++|+.|++++|
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 111122334456666666655442211110012334456666666664
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.85 E-value=1.5e-10 Score=112.85 Aligned_cols=87 Identities=18% Similarity=0.092 Sum_probs=56.3
Q ss_pred CCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhcccccccc
Q 005813 474 GLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRF 553 (676)
Q Consensus 474 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l 553 (676)
+..+++|++|++++|.....-+.+|.+...+++|.+..+..-..-...+..+..|+.|++.+|++....+ ..|+.+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~----~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP----GAFQTL 345 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec----cccccc
Confidence 5557777777777765433334566777777777777754322223356667777777777777776665 456777
Q ss_pred ccccEEEEecC
Q 005813 554 SSLRRLTISRC 564 (676)
Q Consensus 554 ~~L~~L~l~~n 564 (676)
.+|.+|.+-.|
T Consensus 346 ~~l~~l~l~~N 356 (498)
T KOG4237|consen 346 FSLSTLNLLSN 356 (498)
T ss_pred ceeeeeehccC
Confidence 77777777554
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.78 E-value=3.9e-09 Score=119.52 Aligned_cols=106 Identities=21% Similarity=0.179 Sum_probs=78.5
Q ss_pred CCCCCceEEEeccC--CCCCCcccCCCCcCCccEEEEeCCCCCCCCC-CcCCCCccceEeeecccCceEeCCccCCCCCC
Q 005813 4 PHENLEQFCISGYE--GKQFPTWLGDSSFSNLATLNFEDCSVCTTLP-SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSP 80 (676)
Q Consensus 4 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 80 (676)
.+++|+.|-+.++. ...++..+.. +++.|++|++++|..+..+| .++.|.+||+|+++++ .++.+|..+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~-~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l------ 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFR-SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGL------ 614 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHh-hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHH------
Confidence 34578888888886 4555544332 68999999999888889999 6999999999999999 488888664
Q ss_pred CCCCCcceEEecccccccccccccCCCCcccCCcccEEEEcc
Q 005813 81 IPFPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIR 122 (676)
Q Consensus 81 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 122 (676)
.++..|..|++.....+... ..+.. .+++|+.|.+..
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~--~~i~~---~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESI--PGILL---ELQSLRVLRLPR 651 (889)
T ss_pred HHHHhhheeccccccccccc--cchhh---hcccccEEEeec
Confidence 45888888888776655555 22221 488888888765
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.74 E-value=7.2e-08 Score=97.93 Aligned_cols=192 Identities=20% Similarity=0.299 Sum_probs=124.4
Q ss_pred hccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccc
Q 005813 450 LDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQ 529 (676)
Q Consensus 450 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 529 (676)
+..+++++.|++++| .++.+|. + .++|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+| ++|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 445788999999988 7887773 1 2479999999988888777544 3589999999887665444 5688
Q ss_pred eeeccCcchhhhhhhhcccccccc-ccccEEEEecCCCcc-cccccccccccCCCCCCCCccEEeecCCCCcccchhhcC
Q 005813 530 SLNIWGNMEIWKSMIERGRGFHRF-SSLRRLTISRCDDDM-VSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIV 607 (676)
Q Consensus 530 ~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~l-~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 607 (676)
.|++.++.... +..+ ++|++|.+.++.... ..++ ..+|++|+.|++.+|..+ .+|..+.
T Consensus 116 ~L~L~~n~~~~---------L~~LPssLk~L~I~~~n~~~~~~lp---------~~LPsSLk~L~Is~c~~i-~LP~~LP 176 (426)
T PRK15386 116 SLEIKGSATDS---------IKNVPNGLTSLSINSYNPENQARID---------NLISPSLKTLSLTGCSNI-ILPEKLP 176 (426)
T ss_pred eEEeCCCCCcc---------cccCcchHhheeccccccccccccc---------cccCCcccEEEecCCCcc-cCccccc
Confidence 88876543321 3333 367888876531111 1111 126789999999998754 3443333
Q ss_pred CCCCccEEEeCCCCCc-cccCCCCCccccceeeecCChhhHHHHhhcCCccccc-cccceE-EEceeeecC
Q 005813 608 DLQNLTELYLADCPKL-KYFPEKGLPSSLLRLYIVGCPLIEEKCRKDGGQYWLE-THIPVV-LIDWKSVFG 675 (676)
Q Consensus 608 ~~~~L~~L~l~~c~~l-~~i~~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~-~~i~~~-~~~~~~~~~ 675 (676)
++|+.|+++.+... -.++...+++++ .|++.+|.++..-.....|-++.. +-.+.. +-..+.|||
T Consensus 177 --~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~i~~~~~~~~~~~~~~~gd~~yg 244 (426)
T PRK15386 177 --ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKNITFQGNALDVALHFRLGDIVYG 244 (426)
T ss_pred --ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHhhcccccccCcccchhcccccCCEEEe
Confidence 69999999876322 134445567888 999999977766666666666655 333322 333444444
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4e-09 Score=104.55 Aligned_cols=185 Identities=19% Similarity=0.169 Sum_probs=133.7
Q ss_pred CCCcceEEEcCCCCh--hhHHHhhccCCccceeeccCCCCccccCC--CCCCCCCccEEEeecCcCcc-cccccccCCCC
Q 005813 429 PPSLKSIRVGGCSKL--ESIAERLDNNTSLETISIDSCKNLVSFPE--GGLPCAKLRTLAISNCKRLE-ALPKGLHNLTS 503 (676)
Q Consensus 429 ~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~ 503 (676)
.++++.|+++.+-.- ..+......+|+|+.|.++.| .+..... .-..++.|+.|.+++|.... .+-.....||+
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 478999999985432 334556678999999999998 3443322 22357899999999998542 22224468999
Q ss_pred ccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCC
Q 005813 504 LQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLP 583 (676)
Q Consensus 504 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~ 583 (676)
|+.|++.+|..+..-......+..|++|+|++|+.+...... ....++.|+.|.++.| ++.++............
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---~~~~l~~L~~Lnls~t--gi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---KVGTLPGLNQLNLSST--GIASIAEPDVESLDKTH 298 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc---ccccccchhhhhcccc--CcchhcCCCccchhhhc
Confidence 999999998644333334567889999999999998876432 4788999999999998 77766543221122234
Q ss_pred CCCCccEEeecCCCCcccchh--hcCCCCCccEEEeCCC
Q 005813 584 LPASLTSLGISNFPNLERLSS--SIVDLQNLTELYLADC 620 (676)
Q Consensus 584 ~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c 620 (676)
.+++|+.|++.. +++..++. .+..+++|+.|.+..+
T Consensus 299 ~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 299 TFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccccceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence 668999999999 78877775 6667788888887765
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=1.7e-08 Score=91.38 Aligned_cols=136 Identities=21% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCCCCCceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCCCcCCCCccceEeeecccCceEeCCccCCCCCCCC
Q 005813 3 KPHENLEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLPSVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIP 82 (676)
Q Consensus 3 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 82 (676)
-++.++++|++.|+.+..+.. ++. .+.+|++|+++++ .++.++.+..+++|+.|++++|. +++++..+. ..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~-L~~-~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~-----~~ 86 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN-LGA-TLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD-----KN 86 (175)
T ss_dssp --------------------S---T-T-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH-----HH
T ss_pred ccccccccccccccccccccc-hhh-hhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchH-----Hh
Confidence 356789999999999988753 432 5789999999995 99999999999999999999995 888753321 23
Q ss_pred CCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEE
Q 005813 83 FPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFE 162 (676)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~ 162 (676)
+|+|++|++++.. +.++....... .+|+|+.|++.++|--. ...+-...+..+|+|+.||
T Consensus 87 lp~L~~L~L~~N~-I~~l~~l~~L~---~l~~L~~L~L~~NPv~~----------------~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISDLNELEPLS---SLPKLRVLSLEGNPVCE----------------KKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGG---G-TT--EEE-TT-GGGG----------------STTHHHHHHHH-TT-SEET
T ss_pred CCcCCEEECcCCc-CCChHHhHHHH---cCCCcceeeccCCcccc----------------hhhHHHHHHHHcChhheeC
Confidence 7888888887642 33333322222 56777777776654322 0111122355677777777
Q ss_pred EcCCC
Q 005813 163 IGGCK 167 (676)
Q Consensus 163 l~~~~ 167 (676)
-....
T Consensus 147 ~~~V~ 151 (175)
T PF14580_consen 147 GQDVT 151 (175)
T ss_dssp TEETT
T ss_pred CEEcc
Confidence 55544
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.9e-08 Score=99.96 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=78.5
Q ss_pred hccCCccceeeccCCCCcc--ccCCCCCCCCCccEEEeecCcCcccccc-cccCCCCccceeeeccCCC-CCCCcCCCCC
Q 005813 450 LDNNTSLETISIDSCKNLV--SFPEGGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQQLTIGIGGAL-PSLEEEDDLP 525 (676)
Q Consensus 450 ~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~ 525 (676)
...|++++.|+++.|-... .+......+|+|+.|+++.|....-... .-..++.|+.|.++.|... ..+......+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 3445555556555552111 1122334455555555555432211111 0123455555555555422 1111122345
Q ss_pred CccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccc--h
Q 005813 526 TNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERL--S 603 (676)
Q Consensus 526 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l--~ 603 (676)
|+|+.|+++.|..+.... .....+..|++|+|++| .+..+++.- ....++.|+.|.++. +.+.++ |
T Consensus 222 Psl~~L~L~~N~~~~~~~----~~~~i~~~L~~LdLs~N--~li~~~~~~-----~~~~l~~L~~Lnls~-tgi~si~~~ 289 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKA----TSTKILQTLQELDLSNN--NLIDFDQGY-----KVGTLPGLNQLNLSS-TGIASIAEP 289 (505)
T ss_pred CcHHHhhhhcccccceec----chhhhhhHHhhccccCC--ccccccccc-----ccccccchhhhhccc-cCcchhcCC
Confidence 556666665553221111 12344555556666655 555544321 111335555565555 344433 2
Q ss_pred hh-----cCCCCCccEEEeCCCCCccccCC---CCCccccceeeecCCh
Q 005813 604 SS-----IVDLQNLTELYLADCPKLKYFPE---KGLPSSLLRLYIVGCP 644 (676)
Q Consensus 604 ~~-----~~~~~~L~~L~l~~c~~l~~i~~---~~l~~~L~~L~i~~c~ 644 (676)
+. ...+|+|+.|++..|+ +...+. ....++|+.+.+-.++
T Consensus 290 d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 290 DVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred CccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccccc
Confidence 11 2455666666666653 333222 1224455555554443
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.54 E-value=1.6e-08 Score=97.73 Aligned_cols=209 Identities=20% Similarity=0.218 Sum_probs=134.6
Q ss_pred CCcceEEEcCCCChh----hHHHhhccCCccceeeccCCC--Ccc-ccC-------CCCCCCCCccEEEeecCcCccccc
Q 005813 430 PSLKSIRVGGCSKLE----SIAERLDNNTSLETISIDSCK--NLV-SFP-------EGGLPCAKLRTLAISNCKRLEALP 495 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~~~--~l~-~~~-------~~~~~~~~L~~L~l~~~~~~~~~~ 495 (676)
.+++.++++++..-. .+...+.+.++|+..++++-. .++ .+| .....+|+|++|+|++|..-...+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 578888998877543 345566677788888877641 111 122 234557789999999876544333
Q ss_pred c----cccCCCCccceeeeccCCCCC-------------CCcCCCCCCccceeeccCcchhhhhhhhccccccccccccE
Q 005813 496 K----GLHNLTSLQQLTIGIGGALPS-------------LEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRR 558 (676)
Q Consensus 496 ~----~~~~l~~L~~L~l~~c~~l~~-------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 558 (676)
. -+.++..|++|++.+|..-.. ...-....|+|+++...+|.............++..+.|++
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 3 235688899999988753221 11234567889999888887665544332235677788888
Q ss_pred EEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCccc-----chhhcCCCCCccEEEeCCCCCccccCCCC---
Q 005813 559 LTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLER-----LSSSIVDLQNLTELYLADCPKLKYFPEKG--- 630 (676)
Q Consensus 559 L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~i~~~~--- 630 (676)
+.+..|..+.+.+. -+...+..+++|+.|++++ |.++. +-..+..+++|++|++++| .++.-...+
T Consensus 190 vr~~qN~I~~eG~~----al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVT----ALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVD 263 (382)
T ss_pred EEEecccccCchhH----HHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHH
Confidence 88888733333221 1234456778888888888 55542 3346778888888888888 555533311
Q ss_pred ----CccccceeeecCCh
Q 005813 631 ----LPSSLLRLYIVGCP 644 (676)
Q Consensus 631 ----l~~~L~~L~i~~c~ 644 (676)
..|+|+++.+.+|.
T Consensus 264 al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHhccCCCCceeccCcch
Confidence 15678888888775
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=1.1e-07 Score=86.22 Aligned_cols=126 Identities=20% Similarity=0.168 Sum_probs=42.2
Q ss_pred cCCCCccceeeeccCCCCCCCcCCC-CCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccccc
Q 005813 499 HNLTSLQQLTIGIGGALPSLEEEDD-LPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKR 577 (676)
Q Consensus 499 ~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~ 577 (676)
.+..++++|++.++. +..+. .++ .+.+|+.|++++|...+.. ++..++.|+.|++++| .+..+......
T Consensus 16 ~n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N--~I~~i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNN--RISSISEGLDK 85 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T------T----TT--EEE--SS-----S-CHHHHH
T ss_pred ccccccccccccccc-ccccc-chhhhhcCCCEEECCCCCCcccc------CccChhhhhhcccCCC--CCCccccchHH
Confidence 344567888888754 44444 344 5677888888888776653 4667788888888887 77776532210
Q ss_pred ccCCCCCCCCccEEeecCCCCcccchh--hcCCCCCccEEEeCCCCCccccCCC-----CCccccceeeecC
Q 005813 578 LGTTLPLPASLTSLGISNFPNLERLSS--SIVDLQNLTELYLADCPKLKYFPEK-----GLPSSLLRLYIVG 642 (676)
Q Consensus 578 l~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~i~~~-----~l~~~L~~L~i~~ 642 (676)
.+++|+.|++++ +.+..+.+ .+..+|+|+.|++.+|| +..-+.+ ...|+|+.|+=..
T Consensus 86 ------~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 86 ------NLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ------H-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ------hCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 127788888877 66766543 56677888888888776 3333331 1156777775443
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=1.9e-08 Score=103.05 Aligned_cols=187 Identities=25% Similarity=0.298 Sum_probs=149.5
Q ss_pred EEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCC
Q 005813 435 IRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGA 514 (676)
Q Consensus 435 L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 514 (676)
.+++.+ .+..+|..+..|..|+.+.+..| .+..+|..+..+..|+.|+++.++ +..+|..+..+ -|+.|.+++ ++
T Consensus 80 aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli~sN-Nk 154 (722)
T KOG0532|consen 80 ADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLIVSN-NK 154 (722)
T ss_pred hhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEEEec-Cc
Confidence 344443 45566777777888999988877 677888888889999999999965 56666666555 588888887 57
Q ss_pred CCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeec
Q 005813 515 LPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGIS 594 (676)
Q Consensus 515 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~ 594 (676)
++.+|..++..+.|..|+.+.|...+... .+.++.+|+.|.++.| .+..+|.+.. .-.|..||++
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slps-----ql~~l~slr~l~vrRn--~l~~lp~El~--------~LpLi~lDfS 219 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPS-----QLGYLTSLRDLNVRRN--HLEDLPEELC--------SLPLIRLDFS 219 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchH-----HhhhHHHHHHHHHhhh--hhhhCCHHHh--------CCceeeeecc
Confidence 88899899999999999999999888765 5889999999999998 8889987652 2358899998
Q ss_pred CCCCcccchhhcCCCCCccEEEeCCCCCccccCC----CCCccccceeeecCC
Q 005813 595 NFPNLERLSSSIVDLQNLTELYLADCPKLKYFPE----KGLPSSLLRLYIVGC 643 (676)
Q Consensus 595 ~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~----~~l~~~L~~L~i~~c 643 (676)
. |++..||..|.++..|++|.+.+|| +++=|. .|...--|+|.+.-|
T Consensus 220 c-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 C-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred c-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 7 9999999999999999999999997 666554 233344567777766
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=1.5e-07 Score=88.88 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=75.3
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
..|+.+++++|. +..+-.+..-.|.++.|++++| .+..+.. ...+++|+.|++++|. +..+..+...+.++++|.+
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 356777777743 4445555566777777777777 3333333 4556777777777743 4444334455667777777
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
+++ .+..++ .++.+-+|..||+++|++....... +++++|.|+.+.+.+|
T Consensus 360 a~N-~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~---~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 360 AQN-KIETLS-GLRKLYSLVNLDLSSNQIEELDEVN---HIGNLPCLETLRLTGN 409 (490)
T ss_pred hhh-hHhhhh-hhHhhhhheeccccccchhhHHHhc---ccccccHHHHHhhcCC
Confidence 764 344444 4555566666677666665544332 5666666666666665
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.3e-09 Score=100.92 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=67.2
Q ss_pred CCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCccccc----CCCCCCccEEEEcCCc------Chhhccc
Q 005813 84 PCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTF----PEHLPALEMLAIEGCE------ELLVSVA 153 (676)
Q Consensus 84 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~~~~L~~L~i~~~~------~~~~~~~ 153 (676)
.+|+.|+++.+..+.+....-... +|..|.+|+++-|......+ ..--++|+.|+++||. .++...+
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~---scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~ 310 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLS---SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVR 310 (419)
T ss_pred ccceeeccccccccchhHHHHHHH---hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHH
Confidence 445555555554444443333322 45555555555554332111 1112345555555543 1222356
Q ss_pred CCCceeEEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCC
Q 005813 154 SLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICS 233 (676)
Q Consensus 154 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 233 (676)
++|+|.+||+++|..+..... ..+..|+.|++|.++.|-.+.- ..---+.+.+.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~-----------------------~~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~ps 364 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCF-----------------------QEFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPS 364 (419)
T ss_pred hCCceeeeccccccccCchHH-----------------------HHHHhcchheeeehhhhcCCCh---HHeeeeccCcc
Confidence 788888888888876654221 1234567777777777766432 11112355666
Q ss_pred ccEEEeccC
Q 005813 234 LKRLTIRRC 242 (676)
Q Consensus 234 L~~L~l~~c 242 (676)
|.+|++.+|
T Consensus 365 l~yLdv~g~ 373 (419)
T KOG2120|consen 365 LVYLDVFGC 373 (419)
T ss_pred eEEEEeccc
Confidence 777777665
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=8.5e-08 Score=90.54 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=67.2
Q ss_pred CCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccccccc
Q 005813 500 NLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLG 579 (676)
Q Consensus 500 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~ 579 (676)
.++.|++++++++. ++.+-+.....|.++.|++++|.+.... .++.+++|+.|++++| .+..+.....++
T Consensus 282 TWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N--~Ls~~~Gwh~KL- 351 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGN--LLAECVGWHLKL- 351 (490)
T ss_pred hHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeeh------hhhhcccceEeecccc--hhHhhhhhHhhh-
Confidence 34556666666642 3333334455566666666666655442 2556666666666665 444443222222
Q ss_pred CCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCC---CCCccccceeeecCCh
Q 005813 580 TTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPE---KGLPSSLLRLYIVGCP 644 (676)
Q Consensus 580 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~---~~l~~~L~~L~i~~c~ 644 (676)
-+.+.|.+.+ +.++.+. ++..+-+|..|++++| +++.+.+ .+-.|-|+.+.+.+||
T Consensus 352 ------GNIKtL~La~-N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 ------GNIKTLKLAQ-NKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ------cCEeeeehhh-hhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 4555566655 4555555 5556666666666665 4444433 1224556666666665
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=6e-06 Score=84.17 Aligned_cols=136 Identities=28% Similarity=0.372 Sum_probs=96.1
Q ss_pred CCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccc
Q 005813 477 CAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSL 556 (676)
Q Consensus 477 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L 556 (676)
+.+++.|++++| .++.+|. -.++|++|.+.+|..+..+|. ..+++|++|++++|..+... ..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sL----------P~sL 114 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGL----------PESV 114 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCccccccc----------cccc
Confidence 578999999998 5777772 223799999999999988884 34689999999999654322 2358
Q ss_pred cEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCc--ccchhhcCCCCCccEEEeCCCCCccccCCCCCccc
Q 005813 557 RRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNL--ERLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSS 634 (676)
Q Consensus 557 ~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l--~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~ 634 (676)
+.|++.++ ....++. .|++|+.|.+.+.+.. ..++.. --++|++|++++|..+ .+|. .++.+
T Consensus 115 e~L~L~~n--~~~~L~~----------LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~-~LP~S 178 (426)
T PRK15386 115 RSLEIKGS--ATDSIKN----------VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPE-KLPES 178 (426)
T ss_pred ceEEeCCC--CCccccc----------CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcc-ccccc
Confidence 88888765 4444432 6688999988653211 111211 1168999999999754 4553 58899
Q ss_pred cceeeecCCh
Q 005813 635 LLRLYIVGCP 644 (676)
Q Consensus 635 L~~L~i~~c~ 644 (676)
|+.|.+..+.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 9999998763
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=6.2e-08 Score=101.93 Aligned_cols=176 Identities=26% Similarity=0.278 Sum_probs=121.2
Q ss_pred hhccCCccceeeccCCCCcccc-CCCCCCCCCccEEEeecCcCccccccccc-------------C--------------
Q 005813 449 RLDNNTSLETISIDSCKNLVSF-PEGGLPCAKLRTLAISNCKRLEALPKGLH-------------N-------------- 500 (676)
Q Consensus 449 ~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~-------------- 500 (676)
.+.-+++++.|.+-..+.-.-. |..+.++.+|+.|.+.+|+.... .++. .
T Consensus 79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd 156 (1096)
T KOG1859|consen 79 ILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGD 156 (1096)
T ss_pred HHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccc
Confidence 3444566666666555433333 55677888999999999874331 0110 0
Q ss_pred ------CCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccc
Q 005813 501 ------LTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLE 574 (676)
Q Consensus 501 ------l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~ 574 (676)
.-.|...+.++| .+..+-..+..+|.|+.|++++|+..+... +..|+.|+.|+|+.| .++.+|..
T Consensus 157 ~~ns~~Wn~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~~------Lr~l~~LkhLDlsyN--~L~~vp~l 227 (1096)
T KOG1859|consen 157 ISNSPVWNKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVDN------LRRLPKLKHLDLSYN--CLRHVPQL 227 (1096)
T ss_pred cccchhhhhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhHH------HHhcccccccccccc--hhcccccc
Confidence 112222233322 233333355678999999999999888754 789999999999999 78888764
Q ss_pred cccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCC---CCCccccceeeecCChh
Q 005813 575 DKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPE---KGLPSSLLRLYIVGCPL 645 (676)
Q Consensus 575 ~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~---~~l~~~L~~L~i~~c~~ 645 (676)
.. ....|+.|.+++ |.++.+. ++.++.+|+.|++++| -+..... -+.+.+|++||+.|||.
T Consensus 228 ~~-------~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 228 SM-------VGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ch-------hhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 31 124499999999 8888888 7889999999999997 4555443 23378999999999994
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.2e-07 Score=87.80 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=103.7
Q ss_pred CCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccccc-
Q 005813 204 PKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLP- 282 (676)
Q Consensus 204 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~- 282 (676)
..|+.|++++-..... ....++..|.+|+.|.+.+. .+.+-......++ .+|+.|+++.|.++++..
T Consensus 185 sRlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN--------~~L~~lnlsm~sG~t~n~~ 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKN--------SNLVRLNLSMCSGFTENAL 252 (419)
T ss_pred hhhHHhhcchhheeHH---HHHHHHHHHHhhhhcccccc-ccCcHHHHHHhcc--------ccceeeccccccccchhHH
Confidence 4689999998777665 66778899999999999984 5554333322222 899999999999887733
Q ss_pred -ccccCCCCCceEeecCCCCCCCCCC---ccCCCCccEEeeccccC-cCcCchhhccCCCCCccEEeecccccccccccc
Q 005813 283 -QSSLSLSSLREIEICSCHSLVSFPE---VALPSKLRKIEIRYCDA-LKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAV 357 (676)
Q Consensus 283 -~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 357 (676)
-.+.+|+.|..|+++.|......-- ....++|+.|+++|+-. +..-........+++|.+|++++|..++.--..
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 3467899999999999864443211 12268899999998742 111111222267888888888887766642211
Q ss_pred c--CCCCCcEEEEeccCC
Q 005813 358 Q--VPSSLKLLTIWHCDN 373 (676)
Q Consensus 358 ~--~~~~L~~L~l~~~~~ 373 (676)
. -.+.|+.+.+++|..
T Consensus 333 ~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred HHHhcchheeeehhhhcC
Confidence 1 113355555555543
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.10 E-value=1.8e-06 Score=91.57 Aligned_cols=171 Identities=24% Similarity=0.310 Sum_probs=87.7
Q ss_pred CcceEEEcCCCChhhHHHhhccCC-ccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 431 SLKSIRVGGCSKLESIAERLDNNT-SLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
.++.|++.++. ...++......+ +|+.|+++++ .+..++.....+++|+.|++++|+ +..++...+..++|+.|++
T Consensus 117 ~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheec
Confidence 34555554432 233333333342 5666666655 444454444555666666666644 3444443335556666666
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCcc
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLT 589 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~ 589 (676)
+++ .+..++...+.+..|++|.+++|....... .+.++..+..+.+.+| .+..++... ..+++++
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-----~~~~~~~l~~l~l~~n--~~~~~~~~~-------~~l~~l~ 258 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNNSIIELLS-----SLSNLKNLSGLELSNN--KLEDLPESI-------GNLSNLE 258 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCCcceecch-----hhhhcccccccccCCc--eeeeccchh-------ccccccc
Confidence 653 344444333344446666666664333222 3455555555555554 444332222 1335566
Q ss_pred EEeecCCCCcccchhhcCCCCCccEEEeCCCC
Q 005813 590 SLGISNFPNLERLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 590 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 621 (676)
.|++.+ +.+..++. +..+.+|+.|+++++.
T Consensus 259 ~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 259 TLDLSN-NQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred eecccc-cccccccc-ccccCccCEEeccCcc
Confidence 666666 56666664 6666666666666653
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.06 E-value=4.2e-06 Score=88.69 Aligned_cols=192 Identities=26% Similarity=0.308 Sum_probs=139.8
Q ss_pred eEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCC-CccEEEeecCcCcccccccccCCCCccceeeecc
Q 005813 434 SIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCA-KLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIG 512 (676)
Q Consensus 434 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 512 (676)
.+....+....... .+..++.++.|++.++ .+.+++....... +|+.|+++++. +..+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 35555443322222 2344578999999988 7778887677774 99999999955 5666666789999999999997
Q ss_pred CCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEe
Q 005813 513 GALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLG 592 (676)
Q Consensus 513 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~ 592 (676)
. +..++...+..++|+.|++++|........ .....+|++|.+++| .+..++.... ...++..+.
T Consensus 174 ~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-----~~~~~~L~~l~~~~N--~~~~~~~~~~-------~~~~l~~l~ 238 (394)
T COG4886 174 D-LSDLPKLLSNLSNLNNLDLSGNKISDLPPE-----IELLSALEELDLSNN--SIIELLSSLS-------NLKNLSGLE 238 (394)
T ss_pred h-hhhhhhhhhhhhhhhheeccCCccccCchh-----hhhhhhhhhhhhcCC--cceecchhhh-------hcccccccc
Confidence 5 555553445889999999999998876552 245566999999997 4444444332 236677777
Q ss_pred ecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCChh
Q 005813 593 ISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCPL 645 (676)
Q Consensus 593 l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~~ 645 (676)
+.+ +.+..++..+..+++|++|++++| .++.++..+-..+++.|+++++..
T Consensus 239 l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 239 LSN-NKLEDLPESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred cCC-ceeeeccchhccccccceeccccc-cccccccccccCccCEEeccCccc
Confidence 666 667776778889999999999998 788887744468999999998643
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=5.7e-06 Score=61.23 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=29.0
Q ss_pred cccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCC
Q 005813 555 SLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADC 620 (676)
Q Consensus 555 ~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 620 (676)
+|+.|++++| .+..++... +..+++|++|++++ +.++.++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n--~l~~i~~~~------f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN--KLTEIPPDS------FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS--TESEECTTT------TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC--CCCccCHHH------HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555 555554322 23335555555554 44555543 4455555555555554
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=9.4e-07 Score=85.72 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=35.8
Q ss_pred ccCCCCccceeeeccCCCCCCC----c-CCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 498 LHNLTSLQQLTIGIGGALPSLE----E-EDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 498 ~~~l~~L~~L~l~~c~~l~~~~----~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
++.++.|+.|++++|..-+.-. . .-...|+|+.|.+.+|.+...........+...+.|+.|.|++|
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 3445556666666654222110 0 11235677777777776655443221123455677777777776
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.98 E-value=1.2e-05 Score=59.54 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=41.7
Q ss_pred CCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCCCccccCCCCC--ccccceeeecCCh
Q 005813 586 ASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGCP 644 (676)
Q Consensus 586 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~ 644 (676)
|+|++|++++ +.++.+|. .+..+++|++|++++| .++.++...+ .++|++|++++|+
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4677788887 47777775 6677888888888876 6777776554 5778888887774
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.78 E-value=8.6e-07 Score=91.19 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=131.7
Q ss_pred cceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccC
Q 005813 456 LETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWG 535 (676)
Q Consensus 456 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 535 (676)
-...+++.| .+..+|..+..|..|+.+.+..+. +..+|..+..+..|..++++.+ .+..+|..++.+| |+.|-+++
T Consensus 77 t~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRN-RFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhcccc-ccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence 344566666 666777777778888888887754 5667777888888999999885 4555665566554 88888888
Q ss_pred cchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEE
Q 005813 536 NMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTEL 615 (676)
Q Consensus 536 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L 615 (676)
|+....+. .++....|..|+.+.| .+.+++.....+ .+|+.|.++. +.+..+|..+. .-.|..|
T Consensus 153 Nkl~~lp~-----~ig~~~tl~~ld~s~n--ei~slpsql~~l-------~slr~l~vrR-n~l~~lp~El~-~LpLi~l 216 (722)
T KOG0532|consen 153 NKLTSLPE-----EIGLLPTLAHLDVSKN--EIQSLPSQLGYL-------TSLRDLNVRR-NHLEDLPEELC-SLPLIRL 216 (722)
T ss_pred CccccCCc-----ccccchhHHHhhhhhh--hhhhchHHhhhH-------HHHHHHHHhh-hhhhhCCHHHh-CCceeee
Confidence 88776654 4568889999999998 888888766555 8899999999 88999998888 4458999
Q ss_pred EeCCCCCccccCCCCC-ccccceeeecCChh
Q 005813 616 YLADCPKLKYFPEKGL-PSSLLRLYIVGCPL 645 (676)
Q Consensus 616 ~l~~c~~l~~i~~~~l-~~~L~~L~i~~c~~ 645 (676)
++++| ++..||...- ...|++|-+.+||.
T Consensus 217 DfScN-kis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 217 DFSCN-KISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred ecccC-ceeecchhhhhhhhheeeeeccCCC
Confidence 99986 8999998433 68999999999984
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=1.1e-05 Score=88.23 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=28.9
Q ss_pred CCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccc---cCCCCCcEEEEeccCCc
Q 005813 311 PSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAV---QVPSSLKLLTIWHCDNI 374 (676)
Q Consensus 311 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l 374 (676)
+.+|+.++++.+..+++.....++..+++|+.|.+.+|..+++.... ...++|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45555555555554444443333344555555555555444333221 11223455555544443
No 47
>PLN03150 hypothetical protein; Provisional
Probab=97.50 E-value=0.00012 Score=81.57 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=39.5
Q ss_pred cceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccC
Q 005813 456 LETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWG 535 (676)
Q Consensus 456 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 535 (676)
++.|+++++..-..+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 34444444432223444444445555555555443334444445555555555555443344444445555555555555
Q ss_pred cchh
Q 005813 536 NMEI 539 (676)
Q Consensus 536 ~~~~ 539 (676)
|...
T Consensus 500 N~l~ 503 (623)
T PLN03150 500 NSLS 503 (623)
T ss_pred Cccc
Confidence 5443
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.48 E-value=2e-05 Score=86.05 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=59.6
Q ss_pred CCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccC-CCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccc
Q 005813 202 RIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRC-PKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVK 280 (676)
Q Consensus 202 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 280 (676)
.++.|+.|.+.+|..+.+. ....+...+++|+.|++.+| ......+.. ...+...+++|+.|+++++..+++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDD--SLDALALKCPNLEELDLSGCCLLITLSPLL-----LLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred hCchhhHhhhcccccCChh--hHHHHHhhCchhheecccCcccccccchhH-----hhhhhhhcCCcCccchhhhhccCc
Confidence 3567777777777665541 13445566677777777663 222222211 111334446666666666654433
Q ss_pred c--cccccCCCCCceEeecCCCCCCCCCC---ccCCCCccEEeeccccCc
Q 005813 281 L--PQSSLSLSSLREIEICSCHSLVSFPE---VALPSKLRKIEIRYCDAL 325 (676)
Q Consensus 281 l--~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l 325 (676)
. ......|++|++|.+.+|..+++..- ...+++|++|++++|..+
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1 11122366666666666654332211 112555666666666544
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.45 E-value=0.00019 Score=48.55 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCC
Q 005813 586 ASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 586 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
++|++|++++ ++++.+|..+.++++|+.|++++| .+++++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4688888888 788899877899999999999998 5776653
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.27 E-value=0.00033 Score=78.12 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=72.5
Q ss_pred CccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccE
Q 005813 479 KLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRR 558 (676)
Q Consensus 479 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 558 (676)
.++.|++.++.....+|..+..+++|+.|++++|.....+|..++.+++|+.|++++|......+ ..+.++++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP----~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP----ESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc----hHHhcCCCCCE
Confidence 36777887776655667777788888888888876555677667778888888888887765544 24677888888
Q ss_pred EEEecCCCccc-ccccccccccCCCCCCCCccEEeecCCCC
Q 005813 559 LTISRCDDDMV-SFPLEDKRLGTTLPLPASLTSLGISNFPN 598 (676)
Q Consensus 559 L~l~~n~~~l~-~i~~~~~~l~~~~~~~~~L~~L~l~~c~~ 598 (676)
|++++| .+. .+|..... .+.++..+++.+++.
T Consensus 495 L~Ls~N--~l~g~iP~~l~~------~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 495 LNLNGN--SLSGRVPAALGG------RLLHRASFNFTDNAG 527 (623)
T ss_pred EECcCC--cccccCChHHhh------ccccCceEEecCCcc
Confidence 888886 443 45543211 124456677776443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.22 E-value=0.00015 Score=80.74 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=37.0
Q ss_pred CCcceEEEcCCCCh-hhHHHhh-ccCCccceeeccCCCCcc-ccCCCCCCCCCccEEEeecCcCcccccccccCCCCccc
Q 005813 430 PSLKSIRVGGCSKL-ESIAERL-DNNTSLETISIDSCKNLV-SFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQ 506 (676)
Q Consensus 430 ~~L~~L~l~~~~~l-~~~~~~~-~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 506 (676)
.+|++|++++...+ ...+..+ ..+|+|+.|.+.+-.... ++.....++|+|..|++++++ +..+ .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 46666666653332 1222222 236666666665532111 122233345555566655543 2222 34555555555
Q ss_pred eeeec
Q 005813 507 LTIGI 511 (676)
Q Consensus 507 L~l~~ 511 (676)
|.+.+
T Consensus 200 L~mrn 204 (699)
T KOG3665|consen 200 LSMRN 204 (699)
T ss_pred HhccC
Confidence 55554
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00078 Score=64.40 Aligned_cols=189 Identities=15% Similarity=0.173 Sum_probs=120.9
Q ss_pred CCcceEEEcCCCCh--hhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCc-ccccccccCCCCccc
Q 005813 430 PSLKSIRVGGCSKL--ESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRL-EALPKGLHNLTSLQQ 506 (676)
Q Consensus 430 ~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~ 506 (676)
..++.+++.+|... .++...+.++|.|+.|+++.|+--..+...-....+|++|-+.+...- .........+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 56777888776443 334556788999999999988433333222245678999988874311 112224467888888
Q ss_pred eeeeccCC--CCCCCc-CCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCC
Q 005813 507 LTIGIGGA--LPSLEE-EDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLP 583 (676)
Q Consensus 507 L~l~~c~~--l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~ 583 (676)
|.++.+.. +..--+ .-..-+.+++|+.-+|......... ..-+.++++..+.+..| -+++...+. .+.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~--PlK~~s~ek-----~se 221 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEG--PLKTESSEK-----GSE 221 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecC--cccchhhcc-----cCC
Confidence 88887531 110000 1123357888888888766544322 23456889999999886 455554322 222
Q ss_pred CCCCccEEeecCCCCcccchh--hcCCCCCccEEEeCCCCCccccCC
Q 005813 584 LPASLTSLGISNFPNLERLSS--SIVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 584 ~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
..|.+-.|.++. +++.++-. .+..+|+|..|.++++|-...+..
T Consensus 222 ~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 447777888888 78887754 788999999999999986665543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.14 E-value=0.00029 Score=78.48 Aligned_cols=133 Identities=20% Similarity=0.183 Sum_probs=90.9
Q ss_pred CCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccc
Q 005813 202 RIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKL 281 (676)
Q Consensus 202 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l 281 (676)
...+|++|+++|......- .+..+...+|+|++|.+.+-.... +.+.+++..||+|..||++++ +++.+
T Consensus 120 sr~nL~~LdI~G~~~~s~~--W~~kig~~LPsL~sL~i~~~~~~~--------~dF~~lc~sFpNL~sLDIS~T-nI~nl 188 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNG--WPKKIGTMLPSLRSLVISGRQFDN--------DDFSQLCASFPNLRSLDISGT-NISNL 188 (699)
T ss_pred HHHhhhhcCccccchhhcc--HHHHHhhhCcccceEEecCceecc--------hhHHHHhhccCccceeecCCC-CccCc
Confidence 3468999999987665432 566778899999999999842222 236777888899999999985 46666
Q ss_pred cccccCCCCCceEeecCCCCCCCCC---CccCCCCccEEeeccccCcCcC--chhhc--cCCCCCccEEeecc
Q 005813 282 PQSSLSLSSLREIEICSCHSLVSFP---EVALPSKLRKIEIRYCDALKSL--PEAWM--CDTNSSLEILHIYG 347 (676)
Q Consensus 282 ~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~--~~~~~--~~~l~~L~~L~l~~ 347 (676)
.+++++++|+.|.+++-. ..... ....+.+|+.||+|.......- ...+. ...+|+|+.|+.++
T Consensus 189 -~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred -HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 578899999999998743 22222 2344889999999875432221 11110 13477788888775
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00013 Score=69.49 Aligned_cols=204 Identities=16% Similarity=0.168 Sum_probs=119.9
Q ss_pred ccCCccceeeccCCC--CccccCCCCCCCCCccEEEeecCcCcccccccc-cCCCCccceeeeccCC-CCCCCcCCCCCC
Q 005813 451 DNNTSLETISIDSCK--NLVSFPEGGLPCAKLRTLAISNCKRLEALPKGL-HNLTSLQQLTIGIGGA-LPSLEEEDDLPT 526 (676)
Q Consensus 451 ~~~~~L~~L~l~~~~--~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~-l~~~~~~~~~~~ 526 (676)
..++.++++|+.+|. ...++..+..++|.|+.|+++.|+....+. .. ....+|+.|.+.+... ..........+|
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 457889999999883 222455566778999999999876433321 11 2456888888887432 122333456778
Q ss_pred ccceeeccCcchhhhhhhhcccccccc-ccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-
Q 005813 527 NLQSLNIWGNMEIWKSMIERGRGFHRF-SSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS- 604 (676)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~- 604 (676)
.+++|+++.|+........ ...... +.++.|+...| ....+....++ .-.+|++..+.+..|+ ++....
T Consensus 147 ~vtelHmS~N~~rq~n~Dd--~c~e~~s~~v~tlh~~~c---~~~~w~~~~~l---~r~Fpnv~sv~v~e~P-lK~~s~e 217 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDD--NCIEDWSTEVLTLHQLPC---LEQLWLNKNKL---SRIFPNVNSVFVCEGP-LKTESSE 217 (418)
T ss_pred hhhhhhhccchhhhhcccc--ccccccchhhhhhhcCCc---HHHHHHHHHhH---HhhcccchheeeecCc-ccchhhc
Confidence 8888888888543322211 122222 35666666664 11111111111 1144788888888854 444432
Q ss_pred -hcCCCCCccEEEeCCCCCccccCC-CCC--ccccceeeecCChhhHHHHhhcCCccccc--cccceEEE
Q 005813 605 -SIVDLQNLTELYLADCPKLKYFPE-KGL--PSSLLRLYIVGCPLIEEKCRKDGGQYWLE--THIPVVLI 668 (676)
Q Consensus 605 -~~~~~~~L~~L~l~~c~~l~~i~~-~~l--~~~L~~L~i~~c~~l~~~~~~~~~~~~~~--~~i~~~~~ 668 (676)
+...+|.+--|+++-+ ++-+... +.+ .++|.-|.+.++|..... +.++...- +++|.|++
T Consensus 218 k~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l---~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL---RGGERRFLLIARLTKVQV 283 (418)
T ss_pred ccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc---cCCcceEEEEeeccceEE
Confidence 5566777777777765 3433322 122 588999999999977654 22444444 78887765
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.11 E-value=0.00036 Score=47.21 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=26.7
Q ss_pred CCccEEEEeCCCCCCCCCC-cCCCCccceEeeecccCceEeC
Q 005813 31 SNLATLNFEDCSVCTTLPS-VGQLHSLKHLAVRGMSRVKSLG 71 (676)
Q Consensus 31 ~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~ 71 (676)
++|++|+++++ .++++|+ +++|++|+.|++++|+ +++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 36777777774 7777776 7788888888888774 66554
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.09 E-value=0.00011 Score=78.22 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=59.0
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
.+++.+++.++. ++.+...+..+++|++|++++| .++.+.. +..++.|+.|++.+|.. ..+ ..+..+++|+.+++
T Consensus 95 ~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGNLI-SDI-SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccc-hhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccCcc-hhc-cCCccchhhhcccC
Confidence 556666666643 3333322556777777777776 4444432 33445577777777552 322 23444667777777
Q ss_pred eccCCCCCCCcC-CCCCCccceeeccCcchhhh
Q 005813 510 GIGGALPSLEEE-DDLPTNLQSLNIWGNMEIWK 541 (676)
Q Consensus 510 ~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~ 541 (676)
+++... .+... ...+.+++.+.+++|.+...
T Consensus 170 ~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIV-DIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred Ccchhh-hhhhhhhhhccchHHHhccCCchhcc
Confidence 765432 22211 35666777777777765543
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0017 Score=58.74 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccch
Q 005813 524 LPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLS 603 (676)
Q Consensus 524 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 603 (676)
...+...+|+++|...... .+.+++.|..|.+.+| +|..|...... ..++|+.|.+.+ +++..+.
T Consensus 40 ~~d~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nN--rIt~I~p~L~~------~~p~l~~L~Ltn-Nsi~~l~ 104 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNN--RITRIDPDLDT------FLPNLKTLILTN-NSIQELG 104 (233)
T ss_pred cccccceecccccchhhcc------cCCCccccceEEecCC--cceeeccchhh------hccccceEEecC-cchhhhh
Confidence 3456777888888776653 4778888889999988 88888765422 347889999998 7888776
Q ss_pred h--hcCCCCCccEEEeCCCCCccccCCC---CC--ccccceeeecCCh
Q 005813 604 S--SIVDLQNLTELYLADCPKLKYFPEK---GL--PSSLLRLYIVGCP 644 (676)
Q Consensus 604 ~--~~~~~~~L~~L~l~~c~~l~~i~~~---~l--~~~L~~L~i~~c~ 644 (676)
+ .+..||+|++|.+-++| ++.-..+ .+ .|+|+.|+..+=.
T Consensus 105 dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 5 77889999999999985 4444442 11 6888888877643
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.94 E-value=0.00022 Score=75.74 Aligned_cols=182 Identities=20% Similarity=0.185 Sum_probs=118.0
Q ss_pred hccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccc
Q 005813 450 LDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQ 529 (676)
Q Consensus 450 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 529 (676)
+..+.+|..|++.++ .++.+......+++|++|+++++.. ..+ ..+..++.|+.|++.+|. +..+. .+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I-~~i-~~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKI-TKL-EGLSTLTLLKELNLSGNL-ISDIS-GLESLKSLK 165 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheecccccc-ccc-cchhhccchhhheeccCc-chhcc-CCccchhhh
Confidence 566899999999998 6666665566789999999999764 433 246777889999999975 44444 566699999
Q ss_pred eeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccc--ccc----------c--CCCCCCCC--ccEEee
Q 005813 530 SLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLED--KRL----------G--TTLPLPAS--LTSLGI 593 (676)
Q Consensus 530 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~--~~l----------~--~~~~~~~~--L~~L~l 593 (676)
.+++++|........ . ...+.+++.+.+.+| .+..+.... ..+ . ........ |+.+++
T Consensus 166 ~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n--~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEND---E-LSELISLEELDLGGN--SIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYL 239 (414)
T ss_pred cccCCcchhhhhhhh---h-hhhccchHHHhccCC--chhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhc
Confidence 999999988775431 0 478889999999998 555554321 000 0 00111111 556666
Q ss_pred cCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCCh
Q 005813 594 SNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCP 644 (676)
Q Consensus 594 ~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~ 644 (676)
.+ +.+..++.++..+..++.+++.++ ++..+......+.+..++...++
T Consensus 240 ~~-n~i~~~~~~~~~~~~l~~l~~~~n-~~~~~~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 240 SG-NRISRSPEGLENLKNLPVLDLSSN-RISNLEGLERLPKLSELWLNDNK 288 (414)
T ss_pred cc-Cccccccccccccccccccchhhc-cccccccccccchHHHhccCcch
Confidence 66 555555445666677777777765 44444332224455555555554
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.72 E-value=4.2e-05 Score=81.25 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=10.8
Q ss_pred CCCcceEEEcCCCC
Q 005813 429 PPSLKSIRVGGCSK 442 (676)
Q Consensus 429 ~~~L~~L~l~~~~~ 442 (676)
+.+|++|.+.+|+.
T Consensus 108 F~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDL 121 (1096)
T ss_pred ccceeeEEecCcch
Confidence 36888888888764
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.66 E-value=0.00068 Score=63.92 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=105.4
Q ss_pred CCcceEEEcCCCChhh----HHHhhccCCccceeeccCCC--Ccc-cc-------CCCCCCCCCccEEEeecCcCccccc
Q 005813 430 PSLKSIRVGGCSKLES----IAERLDNNTSLETISIDSCK--NLV-SF-------PEGGLPCAKLRTLAISNCKRLEALP 495 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~~~--~l~-~~-------~~~~~~~~~L~~L~l~~~~~~~~~~ 495 (676)
..+..+++++|..-+. ++..+.+-.+|+...+++-. ..+ .+ .....+||.|+..++++|......|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 5677778887765443 34445555666666665431 111 11 1245567888888888876555444
Q ss_pred c----cccCCCCccceeeeccCCCCCCCc--------------CCCCCCccceeeccCcchhhhhhhhcccccccccccc
Q 005813 496 K----GLHNLTSLQQLTIGIGGALPSLEE--------------EDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLR 557 (676)
Q Consensus 496 ~----~~~~l~~L~~L~l~~c~~l~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 557 (676)
. .++.-..|+.|++++|. +..+.. -...-|.|+++....|+........-...++.-..|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 3 34566778888888764 332210 1123477888888777655433322001233335778
Q ss_pred EEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccc-----hhhcCCCCCccEEEeCCC
Q 005813 558 RLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERL-----SSSIVDLQNLTELYLADC 620 (676)
Q Consensus 558 ~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~~~~L~~L~l~~c 620 (676)
.+.+..|..+.+-+..-. ...+..+.+|+.|++.+ +.++.. -..+..++.|++|.+.+|
T Consensus 189 ~vki~qNgIrpegv~~L~---~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLA---FLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred eEEeeecCcCcchhHHHH---HHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccch
Confidence 888887732222222111 12234567888888888 555432 235667777888888888
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.61 E-value=0.0045 Score=56.10 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=71.8
Q ss_pred CceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCCCcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcc
Q 005813 8 LEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLPSVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLE 87 (676)
Q Consensus 8 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~ 87 (676)
=+.+++.++.+..+.. .+. ...+...++|++ +.+..++.|.+++.|.+|.+.+|+ |.+|..... ..+|+|+
T Consensus 21 e~e~~LR~lkip~ien-lg~-~~d~~d~iDLtd-Ndl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~-----~~~p~l~ 91 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGA-TLDQFDAIDLTD-NDLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLD-----TFLPNLK 91 (233)
T ss_pred ccccccccccccchhh-ccc-cccccceecccc-cchhhcccCCCccccceEEecCCc-ceeeccchh-----hhccccc
Confidence 3566777776655433 221 356778899999 588999999999999999999995 999876542 3478899
Q ss_pred eEEeccc--ccccccccccCCCCcccCCcccEEEEccCC
Q 005813 88 TLRFENM--QEWEDWIPLRTGQGVEWFPKLRELHIIRCS 124 (676)
Q Consensus 88 ~L~l~~~--~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 124 (676)
.|.+.+. .++.+..... .||.|+.|.+.+.+
T Consensus 92 ~L~LtnNsi~~l~dl~pLa------~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDPLA------SCPKLEYLTLLGNP 124 (233)
T ss_pred eEEecCcchhhhhhcchhc------cCCccceeeecCCc
Confidence 9998763 2233332222 67888888877643
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.23 E-value=0.0011 Score=56.11 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=36.1
Q ss_pred cccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCC
Q 005813 549 GFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 549 ~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 621 (676)
.+.....|...+|++| .++.+|... ...++..+.|++.+ +.+..+|+.+..+|.|+.|+++.|+
T Consensus 48 ~l~~~~el~~i~ls~N--~fk~fp~kf------t~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDN--GFKKFPKKF------TIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred HHhCCceEEEEecccc--hhhhCCHHH------hhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc
Confidence 3455555666666665 555555432 12334556666666 5666666666666666666666653
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.00015 Score=68.51 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=70.7
Q ss_pred CCCceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCCCcCCCCccceEeeecccCceEeCCccCCCCCCCCCCC
Q 005813 6 ENLEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLPSVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPC 85 (676)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 85 (676)
.+.+.|+.-|++..++ +++. .++.|++|.|+- +.++++.++..+++|+.|.|..|. |.++..-++ .+++|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~-kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~-I~sldEL~Y----Lknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICE-KMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNC-IESLDELEY----LKNLPS 89 (388)
T ss_pred HHhhhhcccCCCccHH--HHHH-hcccceeEEeec-cccccchhHHHHHHHHHHHHHhcc-cccHHHHHH----HhcCch
Confidence 3456677777777665 2332 678889999876 588888889999999999999885 777653333 456888
Q ss_pred cceEEecccccccccccccCCCCcccCCcccEEE
Q 005813 86 LETLRFENMQEWEDWIPLRTGQGVEWFPKLRELH 119 (676)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 119 (676)
|+.|.+...|....-...-...++..+|+|++||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888887766444332222222334577777776
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.99 E-value=0.00017 Score=60.77 Aligned_cols=90 Identities=16% Similarity=0.082 Sum_probs=59.5
Q ss_pred CccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhh
Q 005813 526 TNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSS 605 (676)
Q Consensus 526 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~ 605 (676)
..|+.+++++|...+.+. .....++.++.|++++| .+..+|.+...+ +.|+.|++++ +.+...|..
T Consensus 53 ~el~~i~ls~N~fk~fp~----kft~kf~t~t~lNl~~n--eisdvPeE~Aam-------~aLr~lNl~~-N~l~~~p~v 118 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPK----KFTIKFPTATTLNLANN--EISDVPEELAAM-------PALRSLNLRF-NPLNAEPRV 118 (177)
T ss_pred ceEEEEecccchhhhCCH----HHhhccchhhhhhcchh--hhhhchHHHhhh-------HHhhhccccc-CccccchHH
Confidence 345555666665554443 12355667777888887 777777765333 7788888888 667777766
Q ss_pred cCCCCCccEEEeCCCCCccccCCCC
Q 005813 606 IVDLQNLTELYLADCPKLKYFPEKG 630 (676)
Q Consensus 606 ~~~~~~L~~L~l~~c~~l~~i~~~~ 630 (676)
+..+.+|-.|+..++ .+..+|-+.
T Consensus 119 i~~L~~l~~Lds~~n-a~~eid~dl 142 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPEN-ARAEIDVDL 142 (177)
T ss_pred HHHHHhHHHhcCCCC-ccccCcHHH
Confidence 666777888887776 566676653
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.00022 Score=67.35 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=32.4
Q ss_pred CccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccE
Q 005813 479 KLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRR 558 (676)
Q Consensus 479 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 558 (676)
+.++|+..+|. +.++ .....++.||.|.++-| +++.+. .+..+.+|++|++..|.+....... -++++++|+.
T Consensus 20 ~vkKLNcwg~~-L~DI-sic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~---YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDI-SICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELE---YLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCC-ccHH-HHHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHH---HHhcCchhhh
Confidence 44455555543 2222 12334555555555543 222222 2344444444444444443333221 2344444444
Q ss_pred EEEec
Q 005813 559 LTISR 563 (676)
Q Consensus 559 L~l~~ 563 (676)
|.|..
T Consensus 93 LWL~E 97 (388)
T KOG2123|consen 93 LWLDE 97 (388)
T ss_pred Hhhcc
Confidence 44444
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0049 Score=55.91 Aligned_cols=88 Identities=20% Similarity=0.346 Sum_probs=56.2
Q ss_pred ccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccch-hh
Q 005813 527 NLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLS-SS 605 (676)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~ 605 (676)
.++.++-+++.+...... .+.+++.++.|.+.+| .. +.+.. ++......++|+.|++++|+.|++-- ..
T Consensus 102 ~IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~c-k~---~dD~~--L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE----HLRDLRSIKSLSLANC-KY---FDDWC--LERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCchHHHHHHH----HHhccchhhhheeccc-cc---hhhHH--HHHhcccccchheeeccCCCeechhHHHH
Confidence 456777777776666552 4777788888888884 23 22222 22223356788888888888776543 36
Q ss_pred cCCCCCccEEEeCCCCCcc
Q 005813 606 IVDLQNLTELYLADCPKLK 624 (676)
Q Consensus 606 ~~~~~~L~~L~l~~c~~l~ 624 (676)
+..+++|+.|.+.+-+...
T Consensus 172 L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHhhhhHHHHhcCchhhh
Confidence 7778888888887755433
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.06 E-value=0.088 Score=50.18 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=26.6
Q ss_pred cccCCCCCceEeecCCCCCCCCCC-----ccCCCCccEEeeccccCcCc
Q 005813 284 SSLSLSSLREIEICSCHSLVSFPE-----VALPSKLRKIEIRYCDALKS 327 (676)
Q Consensus 284 ~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~ 327 (676)
.+..|++|+..++++|-.-..++. ++....|++|.+++|. +.-
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp 134 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGP 134 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCc
Confidence 456777777777777654444443 3345667777777765 443
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.93 E-value=0.0078 Score=54.64 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=52.9
Q ss_pred CccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCC--cCCCCCCccceeeccCcchhhhhhhhccccccccccc
Q 005813 479 KLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLE--EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSL 556 (676)
Q Consensus 479 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L 556 (676)
.++.++-+++.....-...+.+++.++.|.+.+|..+..+. ...+..|+|+.|+|++|+.++..... .+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~---~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA---CLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH---HHHHhhhh
Confidence 35555555544433322345677788888888887776542 12235678888888888877776554 56777777
Q ss_pred cEEEEec
Q 005813 557 RRLTISR 563 (676)
Q Consensus 557 ~~L~l~~ 563 (676)
+.|.|.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7777776
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.71 E-value=0.41 Score=41.23 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=32.8
Q ss_pred CCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCc
Q 005813 199 LKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGL 278 (676)
Q Consensus 199 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l 278 (676)
++..+.+|+.+.+.. .++. +....+..+++|+.+++.. .++.+....+. .+++|+.+.+.. .+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~---I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~--------~~~~l~~i~~~~--~~ 69 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKK---IGENAFSNCTSLKSINFPN--NLTSIGDNAFS--------NCKSLESITFPN--NL 69 (129)
T ss_dssp TTTT-TT--EEEETS--T--E---E-TTTTTT-TT-SEEEESS--TTSCE-TTTTT--------T-TT-EEEEETS--TT
T ss_pred HHhCCCCCCEEEECC--CeeE---eChhhcccccccccccccc--cccccceeeee--------cccccccccccc--cc
Confidence 444556666666653 2332 4455566666666666654 24444333211 114555555543 22
Q ss_pred cccc-ccccCCCCCceEeec
Q 005813 279 VKLP-QSSLSLSSLREIEIC 297 (676)
Q Consensus 279 ~~l~-~~~~~l~~L~~L~l~ 297 (676)
..++ ..+..+++|+.+.+.
T Consensus 70 ~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 70 KSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -EE-TTTTTT-TTECEEEET
T ss_pred cccccccccccccccccccC
Confidence 2222 234445555555554
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.60 E-value=0.22 Score=42.96 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=14.0
Q ss_pred CCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCCCccccCC
Q 005813 585 PASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 585 ~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
.++|+.+.+.. ++..++. .+..+ +|+.+.+.. .++.++.
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~ 119 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS--NITKIEE 119 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT--B-SS---
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEECC--CccEECC
Confidence 35555555543 2444444 44444 566655554 3444443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.40 E-value=0.033 Score=52.88 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=28.6
Q ss_pred CcceEEEecCC--CCcccccccccCCCCCceEeecCCCC--CCCCCCccCCCCccEEeecccc
Q 005813 265 CRLEYLRLSEC--KGLVKLPQSSLSLSSLREIEICSCHS--LVSFPEVALPSKLRKIEIRYCD 323 (676)
Q Consensus 265 ~~L~~L~l~~~--~~l~~l~~~~~~l~~L~~L~l~~~~~--l~~~~~~~~~~~L~~L~l~~~~ 323 (676)
++|+.|.++.+ .....++.....+++|++|++++|.. +.++.+...+.+|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 55566666555 22233443444456666666665431 2233333445555555555554
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.73 E-value=0.025 Score=53.63 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=16.2
Q ss_pred CCCccEEEeecC--cCcccccccccCCCCccceeeecc
Q 005813 477 CAKLRTLAISNC--KRLEALPKGLHNLTSLQQLTIGIG 512 (676)
Q Consensus 477 ~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~c 512 (676)
+|+|++|.++.+ .....++.-...+|+|+++.+++|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 455555555554 222222222233455555555553
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.30 E-value=0.1 Score=27.05 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=8.1
Q ss_pred CCccEEEeCCCCCccccC
Q 005813 610 QNLTELYLADCPKLKYFP 627 (676)
Q Consensus 610 ~~L~~L~l~~c~~l~~i~ 627 (676)
++|++|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456666666663 55543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.67 E-value=0.23 Score=27.74 Aligned_cols=9 Identities=33% Similarity=0.217 Sum_probs=3.6
Q ss_pred ccEEEeCCC
Q 005813 612 LTELYLADC 620 (676)
Q Consensus 612 L~~L~l~~c 620 (676)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 334444443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.13 E-value=0.27 Score=27.45 Aligned_cols=19 Identities=47% Similarity=0.658 Sum_probs=9.9
Q ss_pred cceEEEecCCCCcccccccc
Q 005813 266 RLEYLRLSECKGLVKLPQSS 285 (676)
Q Consensus 266 ~L~~L~l~~~~~l~~l~~~~ 285 (676)
+|++|++++| .++.+|..+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 3556666665 344555443
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.94 E-value=0.77 Score=26.78 Aligned_cols=17 Identities=35% Similarity=0.557 Sum_probs=10.2
Q ss_pred CCCccEEEeCCCCCccc
Q 005813 609 LQNLTELYLADCPKLKY 625 (676)
Q Consensus 609 ~~~L~~L~l~~c~~l~~ 625 (676)
+++|++|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 35666666666665544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.26 E-value=0.73 Score=26.82 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=16.8
Q ss_pred CCccceEeeecccCceEeCCccC
Q 005813 53 LHSLKHLAVRGMSRVKSLGSEFY 75 (676)
Q Consensus 53 l~~L~~L~l~~~~~l~~i~~~~~ 75 (676)
+++|++|++.+| .++.+|.+.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 467888888888 4888886654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.26 E-value=0.73 Score=26.82 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=16.8
Q ss_pred CCccceEeeecccCceEeCCccC
Q 005813 53 LHSLKHLAVRGMSRVKSLGSEFY 75 (676)
Q Consensus 53 l~~L~~L~l~~~~~l~~i~~~~~ 75 (676)
+++|++|++.+| .++.+|.+.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 467888888888 4888886654
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.88 E-value=7 Score=22.84 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=10.2
Q ss_pred CCCceEEEeccCCCCCCc
Q 005813 6 ENLEQFCISGYEGKQFPT 23 (676)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~ 23 (676)
+.|+.|++++|....+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 455556666665555554
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.96 E-value=11 Score=21.28 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=9.8
Q ss_pred CccceeeccCcchhhhh
Q 005813 526 TNLQSLNIWGNMEIWKS 542 (676)
Q Consensus 526 ~~L~~L~l~~~~~~~~~ 542 (676)
++|++|+|++|+.....
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 56777777777755443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=46.00 E-value=1.3 Score=41.63 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=63.6
Q ss_pred CCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCccc
Q 005813 522 DDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLER 601 (676)
Q Consensus 522 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~ 601 (676)
+.....-+.||++.+....... .++.++.|..|+++.| .+.-.|.+.+.. ..+..++... ++.+.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~-----n~s~~t~~~rl~~skn--q~~~~~~d~~q~-------~e~~~~~~~~-n~~~~ 102 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGK-----NFSILTRLVRLDLSKN--QIKFLPKDAKQQ-------RETVNAASHK-NNHSQ 102 (326)
T ss_pred hhccceeeeehhhhhHHHhhcc-----chHHHHHHHHHhccHh--hHhhChhhHHHH-------HHHHHHHhhc-cchhh
Confidence 3445566777777776655432 5677888888999987 777777665444 5566777777 78899
Q ss_pred chhhcCCCCCccEEEeCCCC
Q 005813 602 LSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 602 l~~~~~~~~~L~~L~l~~c~ 621 (676)
.|.++...|++++++..+.+
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred CCccccccCCcchhhhccCc
Confidence 99999999999999998876
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=41.55 E-value=17 Score=21.22 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=8.4
Q ss_pred ccccEEEEecCCCccccc
Q 005813 554 SSLRRLTISRCDDDMVSF 571 (676)
Q Consensus 554 ~~L~~L~l~~n~~~l~~i 571 (676)
++|+.|++++| .|+.+
T Consensus 2 ~~L~~L~L~~N--kI~~I 17 (26)
T smart00365 2 TNLEELDLSQN--KIKKI 17 (26)
T ss_pred CccCEEECCCC--cccee
Confidence 45555666655 44443
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=37.16 E-value=1.1 Score=48.13 Aligned_cols=93 Identities=22% Similarity=0.193 Sum_probs=45.5
Q ss_pred CCccceeeccCcchhhhhhhhcccccccccc-ccEEEEecCCCcccccccccccccCCCCCC-CCccEEeecCCCCcc--
Q 005813 525 PTNLQSLNIWGNMEIWKSMIERGRGFHRFSS-LRRLTISRCDDDMVSFPLEDKRLGTTLPLP-ASLTSLGISNFPNLE-- 600 (676)
Q Consensus 525 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~-~~L~~L~l~~c~~l~-- 600 (676)
..++++|++.+|.............+...++ +++|++..| .+.... ...+...+..+ ..++.+++..|+-..
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n--~l~d~g--~~~L~~~l~~~~~~l~~l~l~~nsi~~~~ 278 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN--KLGDVG--VEKLLPCLSVLSETLRVLDLSRNSITEKG 278 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc--CcchHH--HHHHHHHhcccchhhhhhhhhcCCccccc
Confidence 4566666666665543333221234455555 566666665 333221 11122223333 455666666642211
Q ss_pred --cchhhcCCCCCccEEEeCCCC
Q 005813 601 --RLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 601 --~l~~~~~~~~~L~~L~l~~c~ 621 (676)
.+...+..+++++++.+++++
T Consensus 279 ~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 279 VRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hHHHHHHHhhhHHHHHhhcccCc
Confidence 233355566677777777664
No 84
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.66 E-value=89 Score=20.80 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=5.3
Q ss_pred CCCCccEEeec
Q 005813 584 LPASLTSLGIS 594 (676)
Q Consensus 584 ~~~~L~~L~l~ 594 (676)
.|++|++|.+.
T Consensus 32 lP~sl~~L~fg 42 (44)
T PF05725_consen 32 LPNSLKSLSFG 42 (44)
T ss_pred cCCCceEEEee
Confidence 44555555443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.95 E-value=68 Score=34.61 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=32.2
Q ss_pred ccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccccccccc--CCCCCceEeecCCCCCCCC
Q 005813 229 QDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSL--SLSSLREIEICSCHSLVSF 305 (676)
Q Consensus 229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~--~l~~L~~L~l~~~~~l~~~ 305 (676)
..++.+..+.+++ +.+..+. .+..+++..|+|+.|+|+++....+....+. ...-|++|-+.||+..+.+
T Consensus 215 ~n~p~i~sl~lsn-NrL~~Ld------~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSN-NRLYHLD------ALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeeccc-chhhchh------hhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 3445555555555 2343332 2444555556666666666522111111121 2234556666665544443
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.54 E-value=50 Score=35.58 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=51.6
Q ss_pred CCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCccc
Q 005813 522 DDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLER 601 (676)
Q Consensus 522 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~ 601 (676)
....|.+..+.+++|+........ ...+..|.|..|+|++|...+..-++. .++ ...-|++|.+.+.+--+.
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~s--slsq~apklk~L~LS~N~~~~~~~~el-~K~-----k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALS--SLSQIAPKLKTLDLSHNHSKISSESEL-DKL-----KGLPLEELVLEGNPLCTT 285 (585)
T ss_pred hcCCcceeeeecccchhhchhhhh--HHHHhcchhheeecccchhhhcchhhh-hhh-----cCCCHHHeeecCCccccc
Confidence 345678888888888876665433 334677888888888873222222211 111 224577888887432222
Q ss_pred c-------hhhcCCCCCccEEEeCC
Q 005813 602 L-------SSSIVDLQNLTELYLAD 619 (676)
Q Consensus 602 l-------~~~~~~~~~L~~L~l~~ 619 (676)
. ......||+|..|+=..
T Consensus 286 f~~~s~yv~~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 286 FSDRSEYVSAIRELFPKLLRLDGVE 310 (585)
T ss_pred hhhhHHHHHHHHHhcchheeecCcc
Confidence 2 11223677776665443
Done!