Query 005813
Match_columns 676
No_of_seqs 217 out of 2750
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.5E-42 1.9E-46 392.6 27.5 133 521-667 627-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.9E-38 2.4E-42 358.6 29.2 205 430-645 442-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-36 1.6E-40 340.3 36.9 565 5-646 24-622 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-34 1.2E-38 324.8 39.6 558 9-644 7-595 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.2E-34 1.1E-38 320.8 37.3 521 9-645 15-559 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 9.5E-34 3.2E-38 317.0 36.9 515 9-645 14-557 (606)
7 3t6q_A CD180 antigen; protein- 100.0 3.2E-32 1.1E-36 304.6 32.2 522 33-674 14-560 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-31 3.8E-36 300.2 28.3 514 33-674 13-558 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2E-29 6.8E-34 291.5 40.8 503 5-621 23-558 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 4.1E-30 1.4E-34 285.5 32.1 492 10-621 11-529 (570)
11 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-29 4.3E-34 280.1 30.6 190 430-644 310-508 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 1.5E-29 5.2E-34 280.9 31.3 497 33-645 9-530 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-28 4.8E-33 284.5 40.1 525 10-645 8-559 (844)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-29 1.1E-33 277.0 28.3 478 5-621 4-508 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-28 3.6E-33 270.7 23.7 173 454-644 302-479 (520)
16 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-27 7.2E-32 267.2 33.4 513 15-644 40-578 (635)
17 4eco_A Uncharacterized protein 100.0 9.9E-28 3.4E-32 268.2 23.9 111 228-347 269-386 (636)
18 2z7x_B TOLL-like receptor 1, v 99.9 5.6E-27 1.9E-31 257.0 22.5 454 9-621 3-479 (520)
19 4ecn_A Leucine-rich repeat pro 99.9 3.7E-27 1.3E-31 267.9 19.0 366 66-541 436-842 (876)
20 4eco_A Uncharacterized protein 99.9 2.5E-26 8.4E-31 256.9 24.1 335 265-645 206-599 (636)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3E-25 1E-29 245.4 29.3 145 5-168 30-181 (562)
22 4ecn_A Leucine-rich repeat pro 99.9 1.1E-25 3.6E-30 256.0 24.8 337 265-645 448-839 (876)
23 1jl5_A Outer protein YOPM; leu 99.9 2.5E-26 8.4E-31 245.6 16.6 360 30-540 10-371 (454)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.5E-24 1.9E-28 235.2 30.1 433 5-564 51-507 (562)
25 1o6v_A Internalin A; bacterial 99.9 1E-23 3.5E-28 227.3 29.0 349 202-628 44-392 (466)
26 1o6v_A Internalin A; bacterial 99.9 2.2E-23 7.7E-28 224.6 28.4 345 229-645 43-387 (466)
27 4fmz_A Internalin; leucine ric 99.9 3.4E-23 1.2E-27 214.4 26.0 189 430-644 155-344 (347)
28 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-23 5E-28 235.8 24.9 504 5-595 51-576 (635)
29 3v47_A TOLL-like receptor 5B a 99.9 8.5E-24 2.9E-28 227.6 21.9 353 204-621 30-406 (455)
30 3v47_A TOLL-like receptor 5B a 99.9 3.3E-23 1.1E-27 223.1 23.1 339 200-595 50-404 (455)
31 4fmz_A Internalin; leucine ric 99.9 1.8E-22 6.3E-27 208.9 25.2 304 229-621 41-344 (347)
32 2id5_A Lingo-1, leucine rich r 99.9 1.1E-22 3.6E-27 220.4 23.3 178 430-621 152-331 (477)
33 1jl5_A Outer protein YOPM; leu 99.9 8.4E-23 2.9E-27 218.2 21.4 400 5-564 10-426 (454)
34 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-22 1.1E-26 213.8 23.0 311 29-489 40-350 (457)
35 3o6n_A APL1; leucine-rich repe 99.9 9.1E-22 3.1E-26 207.1 24.8 146 479-645 206-351 (390)
36 3o6n_A APL1; leucine-rich repe 99.9 8.8E-22 3E-26 207.2 23.9 129 203-347 44-174 (390)
37 2id5_A Lingo-1, leucine rich r 99.9 1.7E-21 5.8E-26 210.9 23.4 273 265-600 56-333 (477)
38 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-21 7.7E-26 207.4 23.6 98 430-538 191-298 (457)
39 3oja_B Anopheles plasmodium-re 99.9 8.1E-21 2.8E-25 211.0 24.6 107 522-644 250-356 (597)
40 3oja_B Anopheles plasmodium-re 99.9 8.4E-21 2.9E-25 210.9 23.1 307 203-600 50-358 (597)
41 3ogk_B Coronatine-insensitive 99.9 5.1E-22 1.8E-26 221.3 9.9 395 202-643 110-548 (592)
42 3ogk_B Coronatine-insensitive 99.8 2.2E-21 7.7E-26 216.1 10.2 204 111-347 110-327 (592)
43 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-19 6.6E-24 184.8 22.3 108 455-572 173-280 (332)
44 1xku_A Decorin; proteoglycan, 99.8 6E-19 2E-23 181.0 23.8 163 447-620 164-329 (330)
45 1xku_A Decorin; proteoglycan, 99.8 8.2E-19 2.8E-23 180.0 23.1 128 430-564 121-250 (330)
46 2ft3_A Biglycan; proteoglycan, 99.8 7.3E-19 2.5E-23 180.5 22.5 195 431-644 124-331 (332)
47 2p1m_B Transport inhibitor res 99.8 1.1E-21 3.6E-26 218.8 1.1 111 203-322 210-324 (594)
48 2p1m_B Transport inhibitor res 99.8 8.4E-21 2.9E-25 211.5 7.1 204 111-348 103-324 (594)
49 1z7x_W Ribonuclease inhibitor; 99.8 5.1E-21 1.7E-25 206.3 1.1 388 204-644 3-438 (461)
50 2z80_A TOLL-like receptor 2, v 99.8 2.7E-18 9.1E-23 177.9 21.5 204 430-645 100-313 (353)
51 4fcg_A Uncharacterized protein 99.8 8E-19 2.7E-23 179.4 16.6 231 264-564 80-311 (328)
52 4fcg_A Uncharacterized protein 99.8 8.7E-19 3E-23 179.1 15.6 196 430-641 104-309 (328)
53 1ogq_A PGIP-2, polygalacturona 99.8 3E-19 1E-23 181.5 10.8 201 431-646 102-304 (313)
54 1z7x_W Ribonuclease inhibitor; 99.8 3.8E-20 1.3E-24 199.5 2.6 356 201-621 25-438 (461)
55 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-18 3.8E-23 177.2 11.1 158 452-626 147-307 (313)
56 3g06_A SSPH2 (leucine-rich rep 99.8 4.8E-17 1.7E-21 179.0 24.0 256 265-621 40-295 (622)
57 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-16 3.9E-21 176.0 25.0 256 6-349 40-295 (622)
58 3zyj_A Leucine-rich repeat-con 99.7 9.6E-17 3.3E-21 171.4 21.1 128 431-564 137-265 (440)
59 1ozn_A Reticulon 4 receptor; N 99.7 2.5E-17 8.6E-22 165.1 15.4 202 429-645 31-237 (285)
60 3zyj_A Leucine-rich repeat-con 99.7 9.5E-17 3.3E-21 171.4 20.0 175 430-620 112-289 (440)
61 3zyi_A Leucine-rich repeat-con 99.7 9E-17 3.1E-21 172.2 19.3 175 430-620 123-300 (452)
62 2z66_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 164.7 16.2 200 430-644 52-259 (306)
63 3zyi_A Leucine-rich repeat-con 99.7 2.4E-16 8.1E-21 168.9 21.3 153 430-596 147-300 (452)
64 2z80_A TOLL-like receptor 2, v 99.7 1.7E-16 5.7E-21 164.3 18.2 102 230-347 29-133 (353)
65 2z66_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 162.2 14.5 34 265-299 28-62 (306)
66 3o53_A Protein LRIM1, AGAP0063 99.7 1.5E-17 5.1E-22 169.3 6.6 157 454-628 120-280 (317)
67 1ozn_A Reticulon 4 receptor; N 99.7 8.2E-16 2.8E-20 154.0 19.2 161 448-621 74-236 (285)
68 2xwt_C Thyrotropin receptor; s 99.7 2.9E-16 1E-20 152.8 14.4 201 429-646 30-239 (239)
69 3o53_A Protein LRIM1, AGAP0063 99.7 6.2E-17 2.1E-21 164.7 10.0 127 430-563 144-271 (317)
70 2z62_A TOLL-like receptor 4, v 99.7 5.6E-16 1.9E-20 154.4 14.9 201 429-644 27-235 (276)
71 2o6q_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 147.9 17.2 174 455-644 38-216 (270)
72 3oja_A Leucine-rich immune mol 99.6 1.3E-15 4.3E-20 164.3 14.0 244 257-562 26-270 (487)
73 1p9a_G Platelet glycoprotein I 99.6 6.5E-15 2.2E-19 147.4 17.3 177 429-621 30-206 (290)
74 1wwl_A Monocyte differentiatio 99.6 7.4E-16 2.5E-20 156.4 7.8 202 430-644 95-307 (312)
75 1p9a_G Platelet glycoprotein I 99.6 6E-15 2.1E-19 147.7 14.4 195 430-645 10-207 (290)
76 2o6q_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 144.3 16.2 179 429-621 36-216 (270)
77 3oja_A Leucine-rich immune mol 99.6 4E-15 1.4E-19 160.4 13.0 190 430-645 58-249 (487)
78 2xwt_C Thyrotropin receptor; s 99.6 7.9E-15 2.7E-19 142.6 13.9 175 430-622 55-238 (239)
79 2z62_A TOLL-like receptor 4, v 99.6 1.8E-14 6.2E-19 143.4 15.6 177 430-621 52-235 (276)
80 1wwl_A Monocyte differentiatio 99.6 2.5E-16 8.7E-21 159.8 1.9 173 430-621 121-307 (312)
81 4glp_A Monocyte differentiatio 99.6 6.7E-15 2.3E-19 149.2 11.7 205 430-645 91-306 (310)
82 4ay9_X Follicle-stimulating ho 99.6 7.6E-14 2.6E-18 143.9 19.8 240 9-347 12-255 (350)
83 1h6u_A Internalin H; cell adhe 99.6 1.9E-14 6.5E-19 145.5 14.9 195 393-628 40-234 (308)
84 4ay9_X Follicle-stimulating ho 99.6 5.8E-14 2E-18 144.8 18.0 152 451-619 101-255 (350)
85 3m19_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 139.5 12.9 174 431-620 15-189 (251)
86 3rfs_A Internalin B, repeat mo 99.5 8.7E-14 3E-18 138.0 14.8 191 430-643 41-232 (272)
87 2ast_B S-phase kinase-associat 99.5 5.9E-15 2E-19 151.6 5.7 202 430-649 93-308 (336)
88 1h6u_A Internalin H; cell adhe 99.5 1E-13 3.5E-18 140.1 13.7 187 431-644 42-228 (308)
89 2ast_B S-phase kinase-associat 99.5 2.9E-15 9.8E-20 153.9 1.4 202 430-643 70-282 (336)
90 3rfs_A Internalin B, repeat mo 99.5 3E-13 1E-17 134.1 15.6 168 430-620 63-232 (272)
91 4glp_A Monocyte differentiatio 99.5 1.7E-13 5.8E-18 138.8 13.4 227 430-672 64-305 (310)
92 3m19_A Variable lymphocyte rec 99.5 2.6E-13 8.8E-18 132.9 14.0 175 454-645 14-191 (251)
93 1h6t_A Internalin B; cell adhe 99.4 5.8E-13 2E-17 133.3 12.4 172 430-628 46-217 (291)
94 4ezg_A Putative uncharacterize 99.4 6.4E-13 2.2E-17 124.8 10.8 149 452-620 42-191 (197)
95 2ca6_A RAN GTPase-activating p 99.4 5.6E-14 1.9E-18 147.2 1.7 207 430-643 94-340 (386)
96 1h6t_A Internalin B; cell adhe 99.4 2.4E-12 8.4E-17 128.7 13.3 147 430-601 68-214 (291)
97 1m9s_A Internalin B; cell inva 99.4 2.5E-12 8.4E-17 141.4 13.2 172 430-628 43-214 (605)
98 4ezg_A Putative uncharacterize 99.4 2.7E-12 9.4E-17 120.4 11.4 151 475-644 41-192 (197)
99 2ca6_A RAN GTPase-activating p 99.3 2E-13 6.7E-18 143.0 1.2 234 392-645 30-315 (386)
100 3goz_A Leucine-rich repeat-con 99.3 2.3E-13 8E-18 141.0 1.7 98 225-329 15-125 (362)
101 3e6j_A Variable lymphocyte rec 99.3 1.9E-11 6.4E-16 117.6 13.8 147 457-621 22-170 (229)
102 3e6j_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 118.1 12.9 150 479-645 20-171 (229)
103 1m9s_A Internalin B; cell inva 99.3 5.4E-12 1.9E-16 138.7 10.8 173 392-603 41-213 (605)
104 3goz_A Leucine-rich repeat-con 99.3 2.1E-13 7.1E-18 141.4 -1.3 237 394-644 22-295 (362)
105 2xot_A Amphoterin-induced prot 99.3 1.1E-11 3.8E-16 128.2 11.1 131 500-644 62-200 (361)
106 2v9t_B SLIT homolog 2 protein 99.3 2.8E-11 9.5E-16 115.6 12.6 130 479-621 33-163 (220)
107 1xeu_A Internalin C; cellular 99.3 6.1E-12 2.1E-16 123.8 7.9 170 431-628 20-189 (263)
108 3cvr_A Invasion plasmid antige 99.3 3E-11 1E-15 131.3 13.5 182 395-621 60-241 (571)
109 2v9t_B SLIT homolog 2 protein 99.2 3.4E-11 1.2E-15 114.9 12.3 148 481-645 14-164 (220)
110 2o6s_A Variable lymphocyte rec 99.2 2E-11 6.9E-16 115.6 9.9 129 429-564 27-158 (208)
111 2o6s_A Variable lymphocyte rec 99.2 5.9E-11 2E-15 112.3 12.2 105 453-564 27-134 (208)
112 2xot_A Amphoterin-induced prot 99.2 2E-11 6.8E-16 126.3 9.4 156 455-621 40-200 (361)
113 2v70_A SLIT-2, SLIT homolog 2 99.2 8.4E-11 2.9E-15 112.2 12.8 149 457-621 14-164 (220)
114 3cvr_A Invasion plasmid antige 99.2 1E-10 3.5E-15 127.0 15.0 94 430-539 100-193 (571)
115 1xeu_A Internalin C; cellular 99.2 5E-11 1.7E-15 117.2 11.3 148 430-603 41-188 (263)
116 2ell_A Acidic leucine-rich nuc 99.2 3.7E-11 1.3E-15 109.5 8.3 132 429-564 23-157 (168)
117 2ell_A Acidic leucine-rich nuc 99.2 5.6E-11 1.9E-15 108.3 8.6 137 452-628 22-164 (168)
118 3sb4_A Hypothetical leucine ri 99.1 1.7E-10 5.9E-15 117.6 12.4 246 230-511 23-283 (329)
119 1dce_A Protein (RAB geranylger 99.1 1.6E-12 5.4E-17 142.0 -5.3 189 430-639 349-566 (567)
120 2je0_A Acidic leucine-rich nuc 99.0 2.4E-10 8.3E-15 101.7 7.2 57 453-512 16-74 (149)
121 2v70_A SLIT-2, SLIT homolog 2 99.0 7.8E-10 2.7E-14 105.5 10.3 130 430-564 32-163 (220)
122 2je0_A Acidic leucine-rich nuc 99.0 4.3E-10 1.5E-14 100.1 7.3 125 478-618 17-148 (149)
123 1a9n_A U2A', U2A'; complex (nu 99.0 8.9E-10 3E-14 101.1 7.6 132 499-648 16-155 (176)
124 3sb4_A Hypothetical leucine ri 99.0 2E-09 6.9E-14 109.7 10.8 53 453-507 100-153 (329)
125 4fs7_A Uncharacterized protein 98.9 9.4E-08 3.2E-12 99.9 22.4 48 196-250 63-110 (394)
126 4fdw_A Leucine rich hypothetic 98.9 3.6E-08 1.2E-12 102.7 18.8 271 335-660 110-393 (401)
127 4fdw_A Leucine rich hypothetic 98.9 6.8E-08 2.3E-12 100.6 20.8 258 287-620 111-380 (401)
128 1dce_A Protein (RAB geranylger 98.9 7E-12 2.4E-16 136.9 -10.1 175 451-645 346-545 (567)
129 1a9n_A U2A', U2A'; complex (nu 98.9 1.3E-09 4.3E-14 100.1 5.8 133 450-621 15-151 (176)
130 2wfh_A SLIT homolog 2 protein 98.9 8.1E-09 2.8E-13 96.1 10.4 100 457-564 13-112 (193)
131 2wfh_A SLIT homolog 2 protein 98.8 1.8E-08 6.2E-13 93.7 11.7 106 502-621 31-137 (193)
132 2o6r_A Variable lymphocyte rec 98.8 1.7E-08 5.9E-13 92.5 11.0 123 481-620 10-134 (177)
133 4fs7_A Uncharacterized protein 98.8 2E-07 7E-12 97.3 20.3 170 449-643 203-376 (394)
134 1w8a_A SLIT protein; signaling 98.8 8.2E-09 2.8E-13 96.0 7.8 37 476-512 52-88 (192)
135 1w8a_A SLIT protein; signaling 98.8 2.5E-08 8.7E-13 92.7 11.1 100 457-564 11-112 (192)
136 2o6r_A Variable lymphocyte rec 98.8 3E-08 1E-12 90.8 11.3 86 479-572 29-116 (177)
137 4b8c_D Glucose-repressible alc 98.8 6.5E-09 2.2E-13 117.2 7.0 191 430-643 173-369 (727)
138 1ds9_A Outer arm dynein; leuci 98.7 4.9E-10 1.7E-14 105.0 -3.3 58 477-537 47-104 (198)
139 4b8c_D Glucose-repressible alc 98.7 3.9E-09 1.3E-13 119.0 2.5 153 445-620 215-369 (727)
140 1ds9_A Outer arm dynein; leuci 98.6 1.6E-09 5.5E-14 101.5 -2.2 127 430-564 23-150 (198)
141 4gt6_A Cell surface protein; l 98.5 8.3E-06 2.8E-10 85.0 20.6 34 584-619 332-366 (394)
142 2r9u_A Variable lymphocyte rec 98.5 4.3E-07 1.5E-11 82.7 8.8 83 526-621 33-116 (174)
143 3g39_A Variable lymphocyte rec 98.4 4.1E-07 1.4E-11 82.5 8.6 101 505-621 12-113 (170)
144 2r9u_A Variable lymphocyte rec 98.4 5.7E-07 2E-11 81.8 9.5 100 457-564 15-115 (174)
145 3g39_A Variable lymphocyte rec 98.4 5E-07 1.7E-11 81.9 9.1 101 456-564 11-112 (170)
146 4gt6_A Cell surface protein; l 98.4 1.9E-05 6.4E-10 82.3 20.2 104 450-564 261-367 (394)
147 4h09_A Hypothetical leucine ri 98.3 9E-05 3.1E-09 76.6 22.9 71 549-631 281-352 (379)
148 3un9_A NLR family member X1; l 98.3 7.1E-08 2.4E-12 99.5 -1.2 59 430-489 72-137 (372)
149 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4E-11 78.5 6.3 91 204-305 61-155 (176)
150 3e4g_A ATP synthase subunit S, 98.1 2E-06 6.9E-11 77.0 5.3 92 527-625 62-154 (176)
151 4h09_A Hypothetical leucine ri 98.1 0.00064 2.2E-08 70.2 24.8 124 29-169 44-171 (379)
152 3un9_A NLR family member X1; l 98.1 9.7E-08 3.3E-12 98.4 -5.0 185 453-644 71-281 (372)
153 2ra8_A Uncharacterized protein 98.0 9.8E-06 3.4E-10 82.7 8.4 62 446-510 164-227 (362)
154 2ifg_A High affinity nerve gro 98.0 1.1E-05 3.9E-10 82.4 8.4 105 482-601 12-117 (347)
155 2ra8_A Uncharacterized protein 98.0 2.9E-05 9.9E-10 79.2 10.8 54 111-165 170-228 (362)
156 2ifg_A High affinity nerve gro 97.9 2.2E-05 7.6E-10 80.2 8.6 103 435-539 13-116 (347)
157 1io0_A Tropomodulin; LRR prote 97.3 4.7E-05 1.6E-09 69.7 0.7 39 526-564 65-103 (185)
158 1io0_A Tropomodulin; LRR prote 96.9 0.0011 3.8E-08 60.5 6.0 93 199-296 31-128 (185)
159 3rw6_A Nuclear RNA export fact 95.8 0.0049 1.7E-07 59.4 3.5 11 611-621 221-231 (267)
160 3rw6_A Nuclear RNA export fact 95.5 0.0098 3.4E-07 57.3 4.4 59 264-323 169-231 (267)
161 3rfe_A Platelet glycoprotein I 93.4 0.086 3E-06 44.5 5.0 37 584-621 29-66 (130)
162 3rfe_A Platelet glycoprotein I 93.3 0.091 3.1E-06 44.3 4.8 51 10-65 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 89.1 0.17 5.8E-06 45.9 2.4 65 500-564 39-108 (197)
164 1pgv_A TMD-1, tropomodulin TMD 87.8 0.97 3.3E-05 40.9 6.5 69 203-276 40-109 (197)
165 2lz0_A Uncharacterized protein 43.8 28 0.00094 27.2 4.4 43 44-93 8-52 (100)
166 2lz0_A Uncharacterized protein 26.5 76 0.0026 24.6 4.4 45 192-241 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.5e-42 Score=392.57 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=95.0
Q ss_pred CCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccc-ccccccccccCCCCCCCCccEEeecCCCCc
Q 005813 521 EDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMV-SFPLEDKRLGTTLPLPASLTSLGISNFPNL 599 (676)
Q Consensus 521 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~-~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l 599 (676)
.++.+++|++|++++|......+ ..+.++++|+.|++++| .+. .+|...+.+ ++|+.|++++ +++
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~N--~l~g~ip~~l~~L-------~~L~~LdLs~-N~l 692 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHN--DISGSIPDEVGDL-------RGLNILDLSS-NKL 692 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCSS--CCCSCCCGGGGGC-------TTCCEEECCS-SCC
T ss_pred hhhccccccEEECcCCcccccCC----HHHhccccCCEEeCcCC--ccCCCCChHHhCC-------CCCCEEECCC-Ccc
Confidence 45567889999999998876655 35899999999999998 665 677666555 8999999999 566
Q ss_pred c-cchhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCChhh----HHHHhhcCCccccc-cccceEE
Q 005813 600 E-RLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCPLI----EEKCRKDGGQYWLE-THIPVVL 667 (676)
Q Consensus 600 ~-~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~~l----~~~~~~~~~~~~~~-~~i~~~~ 667 (676)
. .+|..+..+++|++|++++|+--..+|..+...++....+.|||.+ -..|....+++|++ +|+|++.
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 5 7888999999999999999965556787665666777777777643 12799999999999 9999874
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.9e-38 Score=358.62 Aligned_cols=205 Identities=19% Similarity=0.175 Sum_probs=129.2
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|.++..+++|+.|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 46666666666555555666666666666666666444455555566666666666666655556666666666666666
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhh--------------------------------------------
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIE-------------------------------------------- 545 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------------------------------- 545 (676)
++|.....+|..++.+++|+.|++++|+.....+..
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 666555555555666666666666666543111100
Q ss_pred ----------------------ccccccccccccEEEEecCCCccc-ccccccccccCCCCCCCCccEEeecCCCCcc-c
Q 005813 546 ----------------------RGRGFHRFSSLRRLTISRCDDDMV-SFPLEDKRLGTTLPLPASLTSLGISNFPNLE-R 601 (676)
Q Consensus 546 ----------------------~~~~l~~l~~L~~L~l~~n~~~l~-~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~-~ 601 (676)
.+..+.++++|+.|++++| .+. .+|...+.+ ++|+.|++++ +.+. .
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N--~l~g~ip~~l~~l-------~~L~~L~Ls~-N~l~g~ 671 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN--MLSGYIPKEIGSM-------PYLFILNLGH-NDISGS 671 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS--CCBSCCCGGGGGC-------TTCCEEECCS-SCCCSC
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCC--cccccCCHHHhcc-------ccCCEEeCcC-CccCCC
Confidence 0012445677888888886 554 555554444 7888888888 5554 7
Q ss_pred chhhcCCCCCccEEEeCCCCCcc-ccCCCC-CccccceeeecCChh
Q 005813 602 LSSSIVDLQNLTELYLADCPKLK-YFPEKG-LPSSLLRLYIVGCPL 645 (676)
Q Consensus 602 l~~~~~~~~~L~~L~l~~c~~l~-~i~~~~-l~~~L~~L~i~~c~~ 645 (676)
+|..++.+++|+.|++++|. ++ .+|..- -.++|++|++++|+.
T Consensus 672 ip~~l~~L~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 672 IPDEVGDLRGLNILDLSSNK-LDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSC-CEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CChHHhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECcCCcc
Confidence 78888888888888888874 44 455421 157888888888863
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-36 Score=340.28 Aligned_cols=565 Identities=16% Similarity=0.085 Sum_probs=382.2
Q ss_pred CCCCceEEEeccCCCCCCc-ccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCC
Q 005813 5 HENLEQFCISGYEGKQFPT-WLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPI 81 (676)
Q Consensus 5 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 81 (676)
++++++|+++++....+|. .+. .+++|++|+++++ .+..++ .++++++|++|++++| .++++|...+ .
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-----~ 94 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTF-----A 94 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTT-----T
T ss_pred CCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC-ccCccChhhh-----c
Confidence 4689999999999887765 455 6899999999885 677765 3889999999999999 4888886544 3
Q ss_pred CCCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCC---CCCCccEEEEcCCcChhhc-----cc
Q 005813 82 PFPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPE---HLPALEMLAIEGCEELLVS-----VA 153 (676)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~L~~L~i~~~~~~~~~-----~~ 153 (676)
.+++|+.|+++++. +...... .+..+++|++|++++|. +.+..|. .+++|+.|+++++...... ..
T Consensus 95 ~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 95 FCTNLTELHLMSNS-IQKIKNN----PFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp TCTTCSEEECCSSC-CCCCCSC----TTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred cCCCCCEEECCCCc-cCccChh----HccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 48999999998864 3322211 22368999999999874 3333443 4778999999887543221 23
Q ss_pred CCCceeEEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCC
Q 005813 154 SLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICS 233 (676)
Q Consensus 154 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 233 (676)
.+++|++|++++|......+ .....+++|+.|.+.++............ ....++
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-~l~~~~ 223 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSP------------------------GCFHAIGRLFGLFLNNVQLGPSLTEKLCL-ELANTS 223 (680)
T ss_dssp TTCEESEEECTTCCCCCBCT------------------------TGGGGSSEECEEECTTCCCHHHHHHHHHH-HHTTSC
T ss_pred ccccccEEECCCCcccccCh------------------------hhhhhhhhhhhhhccccccChhhHHHHHH-Hhhhcc
Confidence 46889999999885443221 12334677888888776643321100000 113478
Q ss_pred ccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCC-ccCCC
Q 005813 234 LKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPE-VALPS 312 (676)
Q Consensus 234 L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~ 312 (676)
|+.|+++++ .++.+.+.. +..+ ..++|++|++++|......+..+..+++|++|++++|......+. ...++
T Consensus 224 L~~L~L~~n-~l~~~~~~~----~~~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (680)
T 1ziw_A 224 IRNLSLSNS-QLSTTSNTT----FLGL--KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296 (680)
T ss_dssp CCEEECTTS-CCCEECTTT----TGGG--GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT
T ss_pred ccEEEccCC-cccccChhH----hhcc--CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCC
Confidence 888888885 455443331 2112 013488888888764444556778888888888888653333232 34478
Q ss_pred CccEEeeccccCcC-----cCc---hhhccCCCCCccEEeeccccccccccccc--CCCCCcEEEEeccC-Ccccccccc
Q 005813 313 KLRKIEIRYCDALK-----SLP---EAWMCDTNSSLEILHIYGCRSLTYIAAVQ--VPSSLKLLTIWHCD-NIRTLTVEE 381 (676)
Q Consensus 313 ~L~~L~l~~~~~l~-----~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~-~l~~l~~~~ 381 (676)
+|+.|+++++..-. .+| ...+ ..+++|+.|+++++ .++.++... ..++|+.|+++++. .+..++...
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~ 374 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSF-QWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTT-TTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTT
T ss_pred CccEEeccchhhhcccccccccccChhhc-ccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhh
Confidence 88888887653111 122 1122 56788888888874 455554432 23568888887753 122222110
Q ss_pred ccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHH-HhhccCCccceee
Q 005813 382 GIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIA-ERLDNNTSLETIS 460 (676)
Q Consensus 382 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~ 460 (676)
+.....++|+.|+++++.- ..+.+ ..+ . -.++|+.|++++|.....++ ..+..+++|++|+
T Consensus 375 ------f~~~~~~~L~~L~L~~n~l-~~~~~-~~~----~------~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 375 ------FVSLAHSPLHILNLTKNKI-SKIES-DAF----S------WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436 (680)
T ss_dssp ------TGGGTTSCCCEEECTTSCC-CEECT-TTT----T------TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred ------hcccccCcCceEECCCCCC-CeECh-hhh----h------CCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence 0111224688888888652 22111 111 1 13789999999987655444 5678899999999
Q ss_pred ccCCCCccccCCCCCCCCCccEEEeecCcCc--ccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcch
Q 005813 461 IDSCKNLVSFPEGGLPCAKLRTLAISNCKRL--EALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNME 538 (676)
Q Consensus 461 l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~ 538 (676)
+++|......+..+..+++|+.|++++|... ..+|..+..+++|+.|++++|......+..+..+++|++|++++|..
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 9999543334557778999999999997643 45677889999999999999764444444578899999999999987
Q ss_pred hhhhhhh----ccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCcc
Q 005813 539 IWKSMIE----RGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLT 613 (676)
Q Consensus 539 ~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~ 613 (676)
....... ....+.++++|+.|++++| .+..++... +..+++|+.|++++ +.++.+|. .+..+++|+
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred cccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCC
Confidence 6653211 0023788999999999998 888887543 34568999999998 78999887 568999999
Q ss_pred EEEeCCCCCccccCCCCC---ccccceeeecCChhh
Q 005813 614 ELYLADCPKLKYFPEKGL---PSSLLRLYIVGCPLI 646 (676)
Q Consensus 614 ~L~l~~c~~l~~i~~~~l---~~~L~~L~i~~c~~l 646 (676)
+|++++| +++.++...+ .++|+.+++++||..
T Consensus 588 ~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 588 SLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp EEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred EEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 9999998 7888876533 479999999998843
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-34 Score=324.82 Aligned_cols=558 Identities=15% Similarity=0.095 Sum_probs=405.0
Q ss_pred ceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCc
Q 005813 9 EQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCL 86 (676)
Q Consensus 9 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (676)
+.++.++.....+|..++ .++++|+++++ .++.++ .++++++|++|++++|. +..++.+.+ ..+++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~----~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L 75 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP----TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELC-----QKLPML 75 (680)
T ss_dssp SEEECCSSCCSSCCSCSC----TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHH-----HHCTTC
T ss_pred CeeECCCCCccccccccC----CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHH-----hcccCc
Confidence 567888888888998765 79999999995 888888 49999999999999995 877765443 348999
Q ss_pred ceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCC---CCCCccEEEEcCCcChhh---cccCCCceeE
Q 005813 87 ETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPE---HLPALEMLAIEGCEELLV---SVASLPALCK 160 (676)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~L~~L~i~~~~~~~~---~~~~~~~L~~ 160 (676)
+.|+++++. +...... .+..+++|++|+++++. +.+..|. .+++|++|++++|..... .+..+++|++
T Consensus 76 ~~L~L~~n~-l~~l~~~----~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 76 KVLNLQHNE-LSQLSDK----TFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149 (680)
T ss_dssp CEEECCSSC-CCCCCTT----TTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE
T ss_pred CEEECCCCc-cCccChh----hhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE
Confidence 999998863 3332221 23378999999999874 4423333 468899999999865433 2567899999
Q ss_pred EEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEec
Q 005813 161 FEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIR 240 (676)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 240 (676)
|++++|.......... .....++|+.|+++++.... .++..+..+++|+.|++.
T Consensus 150 L~L~~n~l~~~~~~~~----------------------~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 150 LLLSNNKIQALKSEEL----------------------DIFANSSLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp EECCSSCCCCBCHHHH----------------------GGGTTCEESEEECTTCCCCC----BCTTGGGGSSEECEEECT
T ss_pred EEccCCcccccCHHHh----------------------hccccccccEEECCCCcccc----cChhhhhhhhhhhhhhcc
Confidence 9999986443221100 01135789999999986543 556677889999999998
Q ss_pred cCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCC--CceEeecCCCCCCCCCC--ccCCCCccE
Q 005813 241 RCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSS--LREIEICSCHSLVSFPE--VALPSKLRK 316 (676)
Q Consensus 241 ~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~--L~~L~l~~~~~l~~~~~--~~~~~~L~~ 316 (676)
++. +..-... .+... ...++|++|++++|......|..+..++. |++|++++|. +..+++ +..+++|++
T Consensus 204 ~~~-l~~~~~~----~~~~~-l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 204 NVQ-LGPSLTE----KLCLE-LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEY 276 (680)
T ss_dssp TCC-CHHHHHH----HHHHH-HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred ccc-cChhhHH----HHHHH-hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccE
Confidence 864 3221111 11100 12389999999998766666777777755 9999999975 444443 445899999
Q ss_pred EeeccccCcCcCchhhccCCCCCccEEeeccccccc-----ccc-----cccCCCCCcEEEEeccCCccccccccccccc
Q 005813 317 IEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLT-----YIA-----AVQVPSSLKLLTIWHCDNIRTLTVEEGIQCS 386 (676)
Q Consensus 317 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-----~~~-----~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 386 (676)
|++++|. +...+...+ ..+++|+.|+++++..-. .++ .....++|+.|+++++. +..++.
T Consensus 277 L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~------- 346 (680)
T 1ziw_A 277 FFLEYNN-IQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS------- 346 (680)
T ss_dssp EECCSCC-BSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-------
T ss_pred eeCCCCc-cCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-------
Confidence 9999998 555544333 789999999998743211 122 12234679999998853 333321
Q ss_pred cCCccccCCcCeeeeecCCC-ccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCC
Q 005813 387 SGRRYTSSFLEELHIYCCDS-LTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCK 465 (676)
Q Consensus 387 ~~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 465 (676)
..+..+++|++|+++++.- +.. ++...+.. + -.++|+.|++++|......+..+..+++|++|++++|.
T Consensus 347 -~~~~~l~~L~~L~Ls~n~~~~~~-l~~~~f~~----~----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 347 -NMFTGLINLKYLSLSNSFTSLRT-LTNETFVS----L----AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp -TTTTTCTTCCEEECTTCBSCCCE-ECTTTTGG----G----TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -hHhccccCCcEEECCCCchhhhh-cchhhhcc----c----ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 1234567899999988642 222 22222110 0 02589999999988777677888999999999999995
Q ss_pred CccccC-CCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCC--CCCCcCCCCCCccceeeccCcchhhhh
Q 005813 466 NLVSFP-EGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGAL--PSLEEEDDLPTNLQSLNIWGNMEIWKS 542 (676)
Q Consensus 466 ~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l--~~~~~~~~~~~~L~~L~l~~~~~~~~~ 542 (676)
....++ ..+..+++|+.|++++|......+..+..+++|++|++.+|..- ...|..+..+++|++|++++|......
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~ 496 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC
Confidence 544555 36778899999999998865555667889999999999987643 456777889999999999999877655
Q ss_pred hhhccccccccccccEEEEecCCCcccccccccc--cccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCC
Q 005813 543 MIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDK--RLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLAD 619 (676)
Q Consensus 543 ~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~--~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~ 619 (676)
+ ..+.++++|+.|++++| .+..++.... .-...+..+++|+.|++++ +.++.+|. .+..+++|++|++++
T Consensus 497 ~----~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 497 D----DMLEGLEKLEILDLQHN--NLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp T----TTTTTCTTCCEEECCSS--CCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred h----hhhccccccCEEeCCCC--CccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCcceeECCC
Confidence 4 35889999999999998 7777643220 0011245668999999999 78999987 689999999999999
Q ss_pred CCCccccCCCCC--ccccceeeecCCh
Q 005813 620 CPKLKYFPEKGL--PSSLLRLYIVGCP 644 (676)
Q Consensus 620 c~~l~~i~~~~l--~~~L~~L~i~~c~ 644 (676)
| +++.+|...+ .++|++|++++|.
T Consensus 570 N-~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 570 N-NLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred C-CCCcCCHhHhCCCCCCCEEECCCCc
Confidence 8 7899988654 6899999999994
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-34 Score=320.83 Aligned_cols=521 Identities=16% Similarity=0.127 Sum_probs=309.6
Q ss_pred ceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCc
Q 005813 9 EQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCL 86 (676)
Q Consensus 9 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (676)
+.++.++.....+|..++ ..+++|+++++ .++.++ .|+++++|++|++++|. +..+....+ ..+++|
T Consensus 15 ~~~~c~~~~l~~iP~~l~----~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-----~~l~~L 83 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP----NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTF-----QSQHRL 83 (606)
T ss_dssp TEEECTTSCCSSCCTTSC----TTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTT-----TTCTTC
T ss_pred ceEECCCCCcccCcCCCC----CcCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-cceeChhhc-----cCcccc
Confidence 345566666666776665 46777777764 666664 47777777777777774 666544332 347777
Q ss_pred ceEEecccccccccccccCCCCcccCCcccEEEEccCCCcc--cccCCCCCCccEEEEcCCcChhh---cccCCCceeEE
Q 005813 87 ETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQ--GTFPEHLPALEMLAIEGCEELLV---SVASLPALCKF 161 (676)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~L~~L~i~~~~~~~~---~~~~~~~L~~L 161 (676)
++|+++++. +...... .+..+++|++|+++++..-. ...-..+++|++|++++|..... .+..+++|++|
T Consensus 84 ~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 84 DTLVLTANP-LIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp CEEECTTCC-CSEECTT----TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CeeeCCCCc-ccccChh----hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 777777653 2221111 12256777777777653221 01113456777777777654432 23346777777
Q ss_pred EEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcc--eEeecCCCCchhhhhccchhhccCCCccEEEe
Q 005813 162 EIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLE--ELGINNMKNETHIWKSHNELLQDICSLKRLTI 239 (676)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 239 (676)
+++++......... ...+++|+ .|+++++.... .++.. .....|++|++
T Consensus 159 ~L~~n~l~~~~~~~------------------------~~~l~~L~~l~L~l~~n~l~~----~~~~~-~~~~~L~~L~l 209 (606)
T 3t6q_A 159 DFQNNAIHYLSKED------------------------MSSLQQATNLSLNLNGNDIAG----IEPGA-FDSAVFQSLNF 209 (606)
T ss_dssp ECCSSCCCEECHHH------------------------HHTTTTCCSEEEECTTCCCCE----ECTTT-TTTCEEEEEEC
T ss_pred EcccCcccccChhh------------------------hhhhcccceeEEecCCCccCc----cChhH-hhhcccccccc
Confidence 77777554432211 12345566 56666665443 22222 22346777777
Q ss_pred ccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccc--c-cccccCCC--CCceEeecCCCCCCCCCC--ccCCC
Q 005813 240 RRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVK--L-PQSSLSLS--SLREIEICSCHSLVSFPE--VALPS 312 (676)
Q Consensus 240 ~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~--l-~~~~~~l~--~L~~L~l~~~~~l~~~~~--~~~~~ 312 (676)
.+|..+... +..+ ....++.+.+........ + +..+..+. +|++|++++|. +..++. +..++
T Consensus 210 ~~~~~~~~~--------~~~l--~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 210 GGTQNLLVI--------FKGL--KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFS 278 (606)
T ss_dssp TTCSCHHHH--------HHHT--TTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCT
T ss_pred CCchhHHHH--------hhhc--cccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhcccc
Confidence 766533221 1122 002233333333222211 1 11122221 56666666653 444443 23366
Q ss_pred CccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccc--cCCCCCcEEEEeccCCccccccccccccccCCc
Q 005813 313 KLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAV--QVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRR 390 (676)
Q Consensus 313 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 390 (676)
+|++|++++|. ++.+|..+ ..+++|+.|+++++ .++.++.. ...++|+.|++.++.....++
T Consensus 279 ~L~~L~l~~n~-l~~lp~~l--~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------ 342 (606)
T 3t6q_A 279 GLQELDLTATH-LSELPSGL--VGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELG------------ 342 (606)
T ss_dssp TCSEEECTTSC-CSCCCSSC--CSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCC------------
T ss_pred CCCEEeccCCc-cCCCChhh--cccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccc------------
Confidence 66666666665 55666554 56666777776663 33333211 111234444444432111111
Q ss_pred cccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhH--HHhhccCCccceeeccCCCCcc
Q 005813 391 YTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESI--AERLDNNTSLETISIDSCKNLV 468 (676)
Q Consensus 391 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~~~~l~ 468 (676)
...+. -.++|++|++++|...... +..+..+++|++|++++|....
T Consensus 343 ----------------------~~~~~----------~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 343 ----------------------TGCLE----------NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp ----------------------SSTTT----------TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred ----------------------hhhhh----------ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 00000 0256666666665543332 4567788999999999885444
Q ss_pred ccCCCCCCCCCccEEEeecCcCcccccc-cccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhcc
Q 005813 469 SFPEGGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERG 547 (676)
Q Consensus 469 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 547 (676)
..+..+..+++|+.|++++|......+. .+..+++|++|++++|......+..++.+++|++|++++|......... .
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~ 469 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK-T 469 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS-S
T ss_pred CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc-c
Confidence 4556777889999999998875544443 4788899999999998766666667788999999999999876532110 1
Q ss_pred ccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCccc-chhhcCCCCCccEEEeCCCCCcccc
Q 005813 548 RGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLER-LSSSIVDLQNLTELYLADCPKLKYF 626 (676)
Q Consensus 548 ~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~i 626 (676)
..+..+++|+.|++++| .+..++... +..+++|+.|++++ +.++. .|..+..+++| +|++++| .++.+
T Consensus 470 ~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~ 538 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFC--DLSSIDQHA------FTSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-HISII 538 (606)
T ss_dssp CGGGGCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-CCCCC
T ss_pred hhhccCCCccEEECCCC--ccCccChhh------hccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-ccccc
Confidence 35788999999999998 777665322 34558999999999 56655 45688999999 9999998 67777
Q ss_pred CCCCC--ccccceeeecCChh
Q 005813 627 PEKGL--PSSLLRLYIVGCPL 645 (676)
Q Consensus 627 ~~~~l--~~~L~~L~i~~c~~ 645 (676)
+...+ .++|++|++++||.
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCCE
T ss_pred CHhhcccCCCCCEEeCCCCCc
Confidence 76554 68999999999984
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.5e-34 Score=317.01 Aligned_cols=515 Identities=15% Similarity=0.113 Sum_probs=335.6
Q ss_pred ceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCc
Q 005813 9 EQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCL 86 (676)
Q Consensus 9 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (676)
+.++.++.....+|..++ .++++|+++++ .++.++ .++++++|++|++++|. +++++...+ ..+++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~----~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~-----~~l~~L 82 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP----SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAW-----HGLHHL 82 (606)
T ss_dssp TEEECTTSCCSSCCTTSC----TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT-----TTCTTC
T ss_pred CceEccCCCcccCCCCCC----CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCc-ccccCHHHh-----hchhhc
Confidence 467777777888887664 78889999884 777777 48888999999999884 888765443 348889
Q ss_pred ceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccC---CCCCCccEEEEcCCcCh----hhcccCCCcee
Q 005813 87 ETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFP---EHLPALEMLAIEGCEEL----LVSVASLPALC 159 (676)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~L~~L~i~~~~~~----~~~~~~~~~L~ 159 (676)
+.|+++++. +..... ..+..+++|++|++++|.... ..+ ..+++|++|++++|... ...+..+++|+
T Consensus 83 ~~L~Ls~n~-l~~~~p----~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 83 SNLILTGNP-IQSFSP----GSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp CEEECTTCC-CCCCCT----TSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred CEeECCCCc-ccccCh----hhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 999988764 333222 222368889999998874322 221 34678888998888644 23477888999
Q ss_pred EEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCC----cceEeecCCCCchhhhhccchhhccCCCcc
Q 005813 160 KFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPK----LEELGINNMKNETHIWKSHNELLQDICSLK 235 (676)
Q Consensus 160 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 235 (676)
+|++++|......... ...+.+ ++.|+++++.... .+...+... +|+
T Consensus 157 ~L~Ls~n~l~~~~~~~------------------------~~~l~~L~~~l~~L~l~~n~l~~----~~~~~~~~~-~L~ 207 (606)
T 3vq2_A 157 HVDLSYNYIQTITVND------------------------LQFLRENPQVNLSLDMSLNPIDF----IQDQAFQGI-KLH 207 (606)
T ss_dssp EEECCSSCCCEECTTT------------------------THHHHHCTTCCCEEECTTCCCCE----ECTTTTTTC-EEE
T ss_pred EEEccCCcceecChhh------------------------hhhhhccccccceeeccCCCcce----eCcccccCc-eee
Confidence 9999988655433211 111122 3367777665433 344444433 677
Q ss_pred EEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCC-----ccc----ccccccCCCCCceEeecCCCCCC-CC
Q 005813 236 RLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKG-----LVK----LPQSSLSLSSLREIEICSCHSLV-SF 305 (676)
Q Consensus 236 ~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-----l~~----l~~~~~~l~~L~~L~l~~~~~l~-~~ 305 (676)
+|+++++.......+ ..+..+ ++|+.+++..... +.. .+..+..+ .++.+++..+..+. ..
T Consensus 208 ~L~L~~n~~~~~~~~----~~~~~l----~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~ 278 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMK----TCLQNL----AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDI 278 (606)
T ss_dssp EEEEESCCSCHHHHH----HHHHTT----TTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGG
T ss_pred eeeccCCccchhHHH----HHhccc----cccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccccc
Confidence 777777532211111 123333 6666666542211 111 11122222 45566663333333 33
Q ss_pred CCccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCCCCcEEEEeccCCcccccccccccc
Q 005813 306 PEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQC 385 (676)
Q Consensus 306 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 385 (676)
+....+++|+.|+++++. +..++ .+ ..+++|++|++++|.- +.++.. ..++|+.|++.++..+...
T Consensus 279 ~~~~~l~~L~~L~l~~~~-~~~l~-~l--~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~-------- 344 (606)
T 3vq2_A 279 VKFHCLANVSAMSLAGVS-IKYLE-DV--PKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF-------- 344 (606)
T ss_dssp GSCGGGTTCSEEEEESCC-CCCCC-CC--CTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--------
T ss_pred cccccCCCCCEEEecCcc-chhhh-hc--cccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch--------
Confidence 444457778888887776 56666 22 6677788888877543 555533 3333555555544322211
Q ss_pred ccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhh--HHHhhccCCccceeeccC
Q 005813 386 SSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLES--IAERLDNNTSLETISIDS 463 (676)
Q Consensus 386 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~ 463 (676)
+... .++|++|++++|..... .+..+..+++|++|++++
T Consensus 345 --------------------------~~~~-------------l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 345 --------------------------KKVA-------------LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp --------------------------CCCC-------------CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred --------------------------hhcc-------------CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 1111 25677777777653322 256677889999999998
Q ss_pred CCCccccCCCCCCCCCccEEEeecCcCccccc-ccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhh
Q 005813 464 CKNLVSFPEGGLPCAKLRTLAISNCKRLEALP-KGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKS 542 (676)
Q Consensus 464 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 542 (676)
| .+..++..+..+++|+.|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|......
T Consensus 386 n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 386 N-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp C-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred C-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 8 567777778888999999999987655555 46788899999999998766666767888899999999999876632
Q ss_pred hhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccc-hhhcCCCCCccEEEeCCCC
Q 005813 543 MIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERL-SSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 543 ~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~ 621 (676)
.+ ..+.++++|+.|++++| .+..++... +..+++|+.|++++ +.+..+ |..+..+++|++|++++|
T Consensus 465 ~~---~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N- 531 (606)
T 3vq2_A 465 LS---NVFANTTNLTFLDLSKC--QLEQISWGV------FDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLDCSFN- 531 (606)
T ss_dssp EC---SCCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCEEECTTS-
T ss_pred hH---HhhccCCCCCEEECCCC--cCCccChhh------hcccccCCEEECCC-CcCCCcCHHHccCCCcCCEEECCCC-
Confidence 21 35788999999999997 666654322 33558899999999 466655 668889999999999998
Q ss_pred CccccCCC--CCccccceeeecCChh
Q 005813 622 KLKYFPEK--GLPSSLLRLYIVGCPL 645 (676)
Q Consensus 622 ~l~~i~~~--~l~~~L~~L~i~~c~~ 645 (676)
+++.+|.. .++.+|++|++++||.
T Consensus 532 ~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 532 RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred cCcccCHhHhhhcccCcEEEccCCCc
Confidence 58888874 1234699999998874
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-32 Score=304.58 Aligned_cols=522 Identities=13% Similarity=0.081 Sum_probs=351.7
Q ss_pred ccEEEEeCCCCCCCCC-CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcceEEecccccccccccccCCCCccc
Q 005813 33 LATLNFEDCSVCTTLP-SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRTGQGVEW 111 (676)
Q Consensus 33 L~~L~l~~c~~l~~l~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 111 (676)
-++++.++. .++++| .+.. ++++|++++|. +++++...+ ..+++|+.|+++++. +..... ..+..
T Consensus 14 ~~~~~c~~~-~l~~iP~~l~~--~l~~L~Ls~n~-i~~~~~~~~-----~~l~~L~~L~Ls~n~-i~~~~~----~~~~~ 79 (606)
T 3t6q_A 14 NKTYNCENL-GLNEIPGTLPN--STECLEFSFNV-LPTIQNTTF-----SRLINLTFLDLTRCQ-IYWIHE----DTFQS 79 (606)
T ss_dssp TTEEECTTS-CCSSCCTTSCT--TCCEEECTTCC-CSEECTTTS-----TTCTTCSEEECTTCC-CCEECT----TTTTT
T ss_pred CceEECCCC-CcccCcCCCCC--cCcEEEccCCc-cCcCChhHh-----ccCccceEEECCCCc-cceeCh----hhccC
Confidence 346666663 788888 3554 79999999995 898865544 459999999999874 322222 22337
Q ss_pred CCcccEEEEccCCCcccccC---CCCCCccEEEEcCCcChh---hcccCCCceeEEEEcCCCCeeEEeeccccCCCccee
Q 005813 112 FPKLRELHIIRCSKLQGTFP---EHLPALEMLAIEGCEELL---VSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVV 185 (676)
Q Consensus 112 ~~~L~~L~l~~c~~l~~~~~---~~~~~L~~L~i~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 185 (676)
+++|++|+++++. +.+..| ..+++|++|++++|.... ..+..+++|++|++++|.......
T Consensus 80 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~------------ 146 (606)
T 3t6q_A 80 QHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL------------ 146 (606)
T ss_dssp CTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC------------
T ss_pred ccccCeeeCCCCc-ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc------------
Confidence 9999999999874 333445 346889999999886554 337788999999999986543211
Q ss_pred ecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCcc--EEEeccCCCccccchhhhhhHHHHHhhc
Q 005813 186 CRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLK--RLTIRRCPKIQSLVAEEEKDQQQQLCEL 263 (676)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~--~L~l~~c~~l~~l~~~~~~~~l~~l~~~ 263 (676)
+....+++|+.|+++++.... .+...+..+++|+ .|+++++ .++.+++.. - .
T Consensus 147 ------------~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~-----~----~ 200 (606)
T 3t6q_A 147 ------------PKGFPTEKLKVLDFQNNAIHY----LSKEDMSSLQQATNLSLNLNGN-DIAGIEPGA-----F----D 200 (606)
T ss_dssp ------------CTTCCCTTCCEEECCSSCCCE----ECHHHHHTTTTCCSEEEECTTC-CCCEECTTT-----T----T
T ss_pred ------------ccccCCcccCEEEcccCcccc----cChhhhhhhcccceeEEecCCC-ccCccChhH-----h----h
Confidence 112237899999999887654 4556678888898 8888885 566555441 1 1
Q ss_pred CCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCC--CCCCcc--C--CCCccEEeeccccCcCcCchhhccCCC
Q 005813 264 SCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLV--SFPEVA--L--PSKLRKIEIRYCDALKSLPEAWMCDTN 337 (676)
Q Consensus 264 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~--~~~~~~--~--~~~L~~L~l~~~~~l~~~~~~~~~~~l 337 (676)
..+|++|++++|..+...+..+... .++.+.+....... .++... . ..+|+.|+++++. +..++...+ ..+
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~-~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~-~~l 277 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNS-TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTF-HCF 277 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTC-EEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTT-TTC
T ss_pred hccccccccCCchhHHHHhhhcccc-chhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHh-ccc
Confidence 2679999999887443332222221 33444444332222 111111 1 2379999999998 777776644 789
Q ss_pred CCccEEeecccccccccccc-cCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCc
Q 005813 338 SSLEILHIYGCRSLTYIAAV-QVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNEL 416 (676)
Q Consensus 338 ~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 416 (676)
++|+.|+++++ .++.+|.. ...++|+.|+++++. +..++ + .
T Consensus 278 ~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~---------------------------------~-~-- 319 (606)
T 3t6q_A 278 SGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK-FENLC---------------------------------Q-I-- 319 (606)
T ss_dssp TTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCC-CSBGG---------------------------------G-G--
T ss_pred cCCCEEeccCC-ccCCCChhhcccccCCEEECccCC-cCcCc---------------------------------h-h--
Confidence 99999999985 56665532 122345555555432 21111 0 0
Q ss_pred chhhhccccCCCCCCcceEEEcCCCChhhHH-HhhccCCccceeeccCCCCcccc---CCCCCCCCCccEEEeecCcCcc
Q 005813 417 PATLESLEVGNLPPSLKSIRVGGCSKLESIA-ERLDNNTSLETISIDSCKNLVSF---PEGGLPCAKLRTLAISNCKRLE 492 (676)
Q Consensus 417 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~ 492 (676)
.+.. .++|++|++++|.....++ ..+..+++|++|++++|. +... +..+..+++|+.|++++|....
T Consensus 320 --~~~~------l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 320 --SASN------FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp --CGGG------CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred --hhhc------cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCc
Confidence 0001 2678888888876553443 347889999999999994 4443 5578889999999999987666
Q ss_pred cccccccCCCCccceeeeccCCCCCCC-cCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccc
Q 005813 493 ALPKGLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSF 571 (676)
Q Consensus 493 ~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i 571 (676)
..+..+..+++|++|++++|......+ ..+..+++|++|++++|......+ ..+.++++|+.|++++| .+...
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~ 464 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGN--HFPKG 464 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT----TTTTTCTTCCEEECTTC--BCGGG
T ss_pred CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH----HHHhCCCCCCEEECCCC--CCCcc
Confidence 667788899999999999986554433 237889999999999998876554 35889999999999998 55442
Q ss_pred ccccccccCCCCCCCCccEEeecCCCCcccc-hhhcCCCCCccEEEeCCCCCccccCCCCC--ccccceeeecCChhhHH
Q 005813 572 PLEDKRLGTTLPLPASLTSLGISNFPNLERL-SSSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGCPLIEE 648 (676)
Q Consensus 572 ~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~~l~~ 648 (676)
.... ...+..+++|+.|++++ +.++.+ |..+..+++|++|++++| +++.++...+ .++| +|++++|....
T Consensus 465 ~~~~---~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~- 537 (606)
T 3t6q_A 465 NIQK---TNSLQTLGRLEILVLSF-CDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISI- 537 (606)
T ss_dssp EECS---SCGGGGCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCC-
T ss_pred cccc---chhhccCCCccEEECCC-CccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccc-
Confidence 1100 11233559999999999 567766 568899999999999998 5766655444 5788 99999996321
Q ss_pred HHhhcCCccccc-cccceEEEceeeec
Q 005813 649 KCRKDGGQYWLE-THIPVVLIDWKSVF 674 (676)
Q Consensus 649 ~~~~~~~~~~~~-~~i~~~~~~~~~~~ 674 (676)
. ....+.. +.+.++.+.++-+-
T Consensus 538 ~----~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 538 I----LPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp C----CGGGHHHHHTSSEEECTTCCEE
T ss_pred c----CHhhcccCCCCCEEeCCCCCcc
Confidence 1 1111233 56666666655443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-31 Score=300.20 Aligned_cols=514 Identities=17% Similarity=0.115 Sum_probs=350.8
Q ss_pred ccEEEEeCCCCCCCCCC-cCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcceEEecccccccccccccCCCCccc
Q 005813 33 LATLNFEDCSVCTTLPS-VGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRTGQGVEW 111 (676)
Q Consensus 33 L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 111 (676)
-++++.++ ..++.+|. +. ++|++|++++|. +++++...+ ..+++|+.|+++++. +....... +..
T Consensus 13 ~~~~~c~~-~~l~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n~-l~~i~~~~----~~~ 78 (606)
T 3vq2_A 13 NITYQCMD-QKLSKVPDDIP--SSTKNIDLSFNP-LKILKSYSF-----SNFSELQWLDLSRCE-IETIEDKA----WHG 78 (606)
T ss_dssp TTEEECTT-SCCSSCCTTSC--TTCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECTTCC-CCEECTTT----TTT
T ss_pred CCceEccC-CCcccCCCCCC--CCcCEEECCCCC-cCEeChhhc-----cCCccCcEEeCCCCc-ccccCHHH----hhc
Confidence 45677777 48899994 44 799999999995 898886544 459999999999863 33332222 237
Q ss_pred CCcccEEEEccCCCcccccCC---CCCCccEEEEcCCcChh---hcccCCCceeEEEEcCCCCeeEEeeccccCCCccee
Q 005813 112 FPKLRELHIIRCSKLQGTFPE---HLPALEMLAIEGCEELL---VSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVV 185 (676)
Q Consensus 112 ~~~L~~L~l~~c~~l~~~~~~---~~~~L~~L~i~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 185 (676)
+++|++|+++++. +....|. .+++|++|++++|.... ..++.+++|++|++++|.......
T Consensus 79 l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l------------ 145 (606)
T 3vq2_A 79 LHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL------------ 145 (606)
T ss_dssp CTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC------------
T ss_pred hhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec------------
Confidence 8999999999874 4434454 46788888888886443 337778888888888886432110
Q ss_pred ecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCcc----EEEeccCCCccccchhhhhhHHHHHh
Q 005813 186 CRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLK----RLTIRRCPKIQSLVAEEEKDQQQQLC 261 (676)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~----~L~l~~c~~l~~l~~~~~~~~l~~l~ 261 (676)
......+++|++|+++++.... .+...+..+++|+ +|+++++ .++.+++.. ..
T Consensus 146 -----------p~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~-----~~-- 202 (606)
T 3vq2_A 146 -----------PAYFSNLTNLVHVDLSYNYIQT----ITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQA-----FQ-- 202 (606)
T ss_dssp -----------CGGGGTCTTCCEEECCSSCCCE----ECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTT-----TT--
T ss_pred -----------hHhHhhcCCCCEEEccCCccee----cChhhhhhhhccccccceeeccCC-CcceeCccc-----cc--
Confidence 0123457888888888876543 3344445555443 7888884 566665441 11
Q ss_pred hcCCcceEEEecCCCCc-ccccccccCCCCCceEeecCCC--C---CCCCCCc----cCCCCccEEeeccccCcCcCchh
Q 005813 262 ELSCRLEYLRLSECKGL-VKLPQSSLSLSSLREIEICSCH--S---LVSFPEV----ALPSKLRKIEIRYCDALKSLPEA 331 (676)
Q Consensus 262 ~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~~~--~---l~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~ 331 (676)
..+|++|++++|... ...|..+..+++|+.+++.... . +..++.. ...-.++.+++.....+......
T Consensus 203 --~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 203 --GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp --TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred --CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc
Confidence 147888888887644 2356677788888877775321 1 1111110 01124666666444434444333
Q ss_pred hccCCCCCccEEeecccccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccc
Q 005813 332 WMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIF 411 (676)
Q Consensus 332 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 411 (676)
+ ..+++|+.+++.++ .++.++.....++|+.|++.+|.- ..++ . + .
T Consensus 281 ~--~~l~~L~~L~l~~~-~~~~l~~l~~~~~L~~L~l~~n~l-~~lp--~--------~-~------------------- 326 (606)
T 3vq2_A 281 F--HCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQL-KQFP--T--------L-D------------------- 326 (606)
T ss_dssp C--GGGTTCSEEEEESC-CCCCCCCCCTTCCCSEEEEESCCC-SSCC--C--------C-C-------------------
T ss_pred c--ccCCCCCEEEecCc-cchhhhhccccccCCEEEcccccC-cccc--c--------C-C-------------------
Confidence 3 78899999999984 566666444445677777777643 3333 0 0 1
Q ss_pred cCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcccc---CCCCCCCCCccEEEeecC
Q 005813 412 SKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSF---PEGGLPCAKLRTLAISNC 488 (676)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~ 488 (676)
.++|+.|++++|...... .+..+++|++|++++| .+... +..+..+++|+.|++++|
T Consensus 327 -----------------l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 327 -----------------LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp -----------------CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred -----------------CCccceeeccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCC
Confidence 267788888777555444 4668999999999999 44444 556677899999999997
Q ss_pred cCcccccccccCCCCccceeeeccCCCCCCC-cCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCc
Q 005813 489 KRLEALPKGLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDD 567 (676)
Q Consensus 489 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 567 (676)
. +..+|..+..+++|++|++++|......+ ..+..+++|++|++++|......+ ..+.++++|+.|++++| .
T Consensus 387 ~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~ 459 (606)
T 3vq2_A 387 G-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGN--S 459 (606)
T ss_dssp S-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT----TTTTTCTTCCEEECTTC--E
T ss_pred c-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch----hhhcCCCCCCEEECCCC--c
Confidence 7 55677788999999999999986555444 467889999999999999876555 35889999999999998 6
Q ss_pred ccc--cccccccccCCCCCCCCccEEeecCCCCcccc-hhhcCCCCCccEEEeCCCCCccccCCCCC--ccccceeeecC
Q 005813 568 MVS--FPLEDKRLGTTLPLPASLTSLGISNFPNLERL-SSSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVG 642 (676)
Q Consensus 568 l~~--i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~ 642 (676)
+.. ++.. +..+++|+.|++++ +.++.+ |..+..+++|++|++++| +++.++...+ .++|++|++++
T Consensus 460 l~~~~~~~~-------~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 460 FKDNTLSNV-------FANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp EGGGEECSC-------CTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTT
T ss_pred CCCcchHHh-------hccCCCCCEEECCC-CcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCC
Confidence 654 3332 34559999999999 467665 557899999999999999 5777644344 68999999999
Q ss_pred ChhhHHHHhhcCCccccc--cccceEEEceeeec
Q 005813 643 CPLIEEKCRKDGGQYWLE--THIPVVLIDWKSVF 674 (676)
Q Consensus 643 c~~l~~~~~~~~~~~~~~--~~i~~~~~~~~~~~ 674 (676)
|. ++.+ . .. +.. ..+.++.+.++-+-
T Consensus 531 N~-l~~~---p-~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 531 NR-IETS---K-GI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SC-CCCE---E-SC-GGGSCTTCCEEECCSCCCC
T ss_pred Cc-Cccc---C-Hh-HhhhcccCcEEEccCCCcc
Confidence 96 3321 1 11 222 35777777665543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=2e-29 Score=291.54 Aligned_cols=503 Identities=14% Similarity=0.074 Sum_probs=285.7
Q ss_pred CCCCceEEEeccCCCCC-CcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCC
Q 005813 5 HENLEQFCISGYEGKQF-PTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPI 81 (676)
Q Consensus 5 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 81 (676)
+++|++|+++++.+..+ |..+. .+++|++|++++|.....++ .++++++|++|++++|. +..++.+.+ .
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~-----~ 94 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAF-----Q 94 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSS-----C
T ss_pred CCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHc-----c
Confidence 57788888888887665 56665 68888888888875666664 58888888888888884 777644433 3
Q ss_pred CCCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccC---CCCCCccEEEEcCCcChhh---cccCC
Q 005813 82 PFPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFP---EHLPALEMLAIEGCEELLV---SVASL 155 (676)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~L~~L~i~~~~~~~~---~~~~~ 155 (676)
.+++|+.|+++++.--........ +..+++|++|+++++..-....+ ..+++|+.|+++++..... .+..+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~---~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGY---FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCC---CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred CCcccCEeeCcCCCCCcccccCcc---ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 488888888887642211111111 22678888888887643221111 3467888888887754332 23333
Q ss_pred --CceeEEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhc--cC
Q 005813 156 --PALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQ--DI 231 (676)
Q Consensus 156 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~ 231 (676)
++|+.|+++++......+.... ....... ...|+.|+++++..... .+..+.. ..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~-----------------~~~~~~~-~~~L~~L~Ls~n~l~~~---~~~~~~~~l~~ 230 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWG-----------------KCMNPFR-NMVLEILDVSGNGWTVD---ITGNFSNAISK 230 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCC-----------------SSSCTTT-TCCBSEEBCSSCCSSTT---TTSGGGGTSCS
T ss_pred cCCccceEECCCCccccccccchh-----------------hcCCccc-cCceeEEecCCCcCchh---HHHHHHhhcCc
Confidence 6778888887754332111000 0000011 12488899988754432 2232222 22
Q ss_pred CCccEEEeccCC--------CccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCC
Q 005813 232 CSLKRLTIRRCP--------KIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLV 303 (676)
Q Consensus 232 ~~L~~L~l~~c~--------~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~ 303 (676)
++++.|.+..+. .+....... +..+ .+++|+.|++++|......+..+..+++|++|++++|. +.
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~----f~~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~ 303 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNT----FAGL--ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-IN 303 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTT----TTTT--TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CC
T ss_pred ccccceecccccccccccccccCCCChhh----hhcc--ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CC
Confidence 567777766321 111111110 1110 13688999998876555566778888999999998865 44
Q ss_pred CCCC--ccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccC--CCCCcEEEEeccCCcccccc
Q 005813 304 SFPE--VALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQV--PSSLKLLTIWHCDNIRTLTV 379 (676)
Q Consensus 304 ~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~l~~l~~ 379 (676)
.+++ +..+++|++|++++|. ++.+....+ ..+++|+.|+++++ .++.++...+ .++|+.|+++++ .++.++
T Consensus 304 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~- 378 (844)
T 3j0a_A 304 KIADEAFYGLDNLQVLNLSYNL-LGELYSSNF-YGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH- 378 (844)
T ss_dssp EECTTTTTTCSSCCEEEEESCC-CSCCCSCSC-SSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCS-
T ss_pred CCChHHhcCCCCCCEEECCCCC-CCccCHHHh-cCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCccc-
Confidence 4433 3448889999999887 555543333 67888999998884 5666554322 355777777764 233322
Q ss_pred ccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCcccee
Q 005813 380 EEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETI 459 (676)
Q Consensus 380 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 459 (676)
.+++|+.|+++++. .. .++. ...+++.|
T Consensus 379 ------------~~~~L~~L~l~~N~------------------------------------l~-~l~~---~~~~l~~L 406 (844)
T 3j0a_A 379 ------------FIPSIPDIFLSGNK------------------------------------LV-TLPK---INLTANLI 406 (844)
T ss_dssp ------------SCCSCSEEEEESCC------------------------------------CC-CCCC---CCTTCCEE
T ss_pred ------------CCCCcchhccCCCC------------------------------------cc-cccc---ccccccee
Confidence 12345555555432 11 1111 12344445
Q ss_pred eccCCCCccccCC--CCCCCCCccEEEeecCcCcccccc-cccCCCCccceeeeccCCC-----CCCCcCCCCCCcccee
Q 005813 460 SIDSCKNLVSFPE--GGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQQLTIGIGGAL-----PSLEEEDDLPTNLQSL 531 (676)
Q Consensus 460 ~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l-----~~~~~~~~~~~~L~~L 531 (676)
++++| .+..++. .+..+++|+.|++++|......+. .+..+++|+.|++++|... ...+..+..+++|++|
T Consensus 407 ~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 407 HLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp ECCSC-CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECC
T ss_pred ecccC-ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEE
Confidence 55444 2332221 122345555555555432211111 2234555666666654322 1112335566777777
Q ss_pred eccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCC
Q 005813 532 NIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQN 611 (676)
Q Consensus 532 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 611 (676)
++++|......+ ..+.++++|+.|++++| .+..++... .+++|+.|++++ +.++.++. ..+++
T Consensus 486 ~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~--------~~~~L~~L~Ls~-N~l~~~~~--~~~~~ 548 (844)
T 3j0a_A 486 YLNHNYLNSLPP----GVFSHLTALRGLSLNSN--RLTVLSHND--------LPANLEILDISR-NQLLAPNP--DVFVS 548 (844)
T ss_dssp CCCHHHHTTCCT----TSSSSCCSCSEEEEESC--CCSSCCCCC--------CCSCCCEEEEEE-ECCCCCCS--CCCSS
T ss_pred ECCCCcccccCh----hHccchhhhheeECCCC--CCCccChhh--------hhccccEEECCC-CcCCCCCh--hHhCC
Confidence 777776655444 34667777777777777 666666543 336777777777 56655543 23456
Q ss_pred ccEEEeCCCC
Q 005813 612 LTELYLADCP 621 (676)
Q Consensus 612 L~~L~l~~c~ 621 (676)
|+.|++++|+
T Consensus 549 L~~l~l~~Np 558 (844)
T 3j0a_A 549 LSVLDITHNK 558 (844)
T ss_dssp CCEEEEEEEC
T ss_pred cCEEEecCCC
Confidence 7777777654
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=285.49 Aligned_cols=492 Identities=15% Similarity=0.144 Sum_probs=270.1
Q ss_pred eEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcc
Q 005813 10 QFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLE 87 (676)
Q Consensus 10 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~ 87 (676)
..+.++.....+|..+. .++++|+++++ .++.++ .|+++++|++|++++|. +++++...+ ..+++|+
T Consensus 11 ~~~c~~~~l~~ip~~l~----~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~-----~~l~~L~ 79 (570)
T 2z63_A 11 TYQCMELNFYKIPDNLP----FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAY-----QSLSHLS 79 (570)
T ss_dssp EEECCSSCCSSCCSSSC----SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTT-----TTCTTCC
T ss_pred EEEeCCCCccccCCCcc----ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCc-CCccCcccc-----cCchhCC
Confidence 45555555666666554 46777777774 666665 47777777777777773 777665443 3377777
Q ss_pred eEEecccccccccccccCCCCcccCCcccEEEEccCCCccccc---CCCCCCccEEEEcCCcCh----hhcccCCCceeE
Q 005813 88 TLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTF---PEHLPALEMLAIEGCEEL----LVSVASLPALCK 160 (676)
Q Consensus 88 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~~L~~L~i~~~~~~----~~~~~~~~~L~~ 160 (676)
.|+++++. +...... .+..+++|++|+++++. +.... -..+++|++|++++|... ...++.+++|++
T Consensus 80 ~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 80 TLILTGNP-IQSLALG----AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp EEECTTCC-CCEECTT----TTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred EEeCcCCc-CCccCHh----hhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 77777653 2222111 12257777777777652 32111 134667777777776533 233666778888
Q ss_pred EEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCc----ceEeecCCCCchhhhhccchhhccCCCccE
Q 005813 161 FEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKL----EELGINNMKNETHIWKSHNELLQDICSLKR 236 (676)
Q Consensus 161 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~ 236 (676)
|+++++......... ...+.+| +.|+++++.... .+...+... +|++
T Consensus 154 L~l~~n~l~~~~~~~------------------------~~~l~~L~~~~~~L~l~~n~l~~----~~~~~~~~~-~L~~ 204 (570)
T 2z63_A 154 LDLSSNKIQSIYCTD------------------------LRVLHQMPLLNLSLDLSLNPMNF----IQPGAFKEI-RLHK 204 (570)
T ss_dssp EECTTSCCCEECGGG------------------------GHHHHTCTTCCCEEECTTCCCCE----ECTTTTTTC-EEEE
T ss_pred EeCcCCccceecHHH------------------------ccchhccchhhhhcccCCCCcee----cCHHHhccC-ccee
Confidence 888777654332211 1112333 456666654433 233333333 5666
Q ss_pred EEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCC-----CCcccccc-cccCCC--CCceEeecCCCCCCC-CCC
Q 005813 237 LTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSEC-----KGLVKLPQ-SSLSLS--SLREIEICSCHSLVS-FPE 307 (676)
Q Consensus 237 L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~-----~~l~~l~~-~~~~l~--~L~~L~l~~~~~l~~-~~~ 307 (676)
|++.++..-.. .....+..+ .+++.+.+... ..+..++. .+..+. .++.+++.++..+.. .+.
T Consensus 205 L~l~~n~~~~~----~~~~~~~~l----~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 205 LTLRNNFDSLN----VMKTCIQGL----AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp EEEESCCSCTT----HHHHHHHTT----TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred Eeccccccccc----chhhhhcCc----cccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence 66665311100 001112222 44444433211 11111111 112222 244555554422222 121
Q ss_pred -ccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCCCCcEEEEeccCCccccccccccccc
Q 005813 308 -VALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCS 386 (676)
Q Consensus 308 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 386 (676)
...+++|+.|+++++. +..++..+ ..+ +|+.|++++| .++.++...+ ++|+.|++.++......+
T Consensus 277 ~~~~l~~L~~L~l~~~~-l~~l~~~~--~~~-~L~~L~l~~n-~~~~l~~~~l-~~L~~L~l~~n~~~~~~~-------- 342 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVT-IERVKDFS--YNF-GWQHLELVNC-KFGQFPTLKL-KSLKRLTFTSNKGGNAFS-------- 342 (570)
T ss_dssp TTGGGTTCSEEEEESCE-ECSCCBCC--SCC-CCSEEEEESC-BCSSCCBCBC-SSCCEEEEESCBSCCBCC--------
T ss_pred hhcCcCcccEEEecCcc-chhhhhhh--ccC-CccEEeeccC-cccccCcccc-cccCEEeCcCCccccccc--------
Confidence 2235667777777665 55565544 444 6777777764 3444443222 235555555432111111
Q ss_pred cCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhh--HHHhhccCCccceeeccCC
Q 005813 387 SGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLES--IAERLDNNTSLETISIDSC 464 (676)
Q Consensus 387 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~ 464 (676)
... .++|++|++++|..... .+..+..+++|++|++++|
T Consensus 343 --------------------------~~~-------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 343 --------------------------EVD-------------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp --------------------------CCB-------------CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred --------------------------ccc-------------CCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence 000 25666666666543322 1455667888888888888
Q ss_pred CCccccCCCCCCCCCccEEEeecCcCccccc-ccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhh
Q 005813 465 KNLVSFPEGGLPCAKLRTLAISNCKRLEALP-KGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSM 543 (676)
Q Consensus 465 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 543 (676)
.+..++..+..+++|+.|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.......
T Consensus 384 -~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 384 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp -SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred -ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 455555446677888888888876444333 356777888888888876555556566777788888888877652211
Q ss_pred hhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCC
Q 005813 544 IERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCP 621 (676)
Q Consensus 544 ~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 621 (676)
+ ..+..+++|+.|++++| .+..+... .+..+++|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus 463 p---~~~~~l~~L~~L~l~~n--~l~~~~~~------~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 463 P---DIFTELRNLTFLDLSQC--QLEQLSPT------AFNSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp C---SCCTTCTTCCEEECTTS--CCCEECTT------TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred h---hhhhcccCCCEEECCCC--ccccCChh------hhhcccCCCEEeCCC-CcCCCCCHHHhhcccCCcEEEecCCc
Confidence 1 25677777888888776 55555321 123346777777777 45665554 56677777777777775
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.3e-29 Score=280.12 Aligned_cols=190 Identities=20% Similarity=0.235 Sum_probs=115.4
Q ss_pred CCcceEEEcCCCChhhHHHhh-ccCCccceeeccCCCCcccc---CCCCCCCCCccEEEeecCcCccccc---ccccCCC
Q 005813 430 PSLKSIRVGGCSKLESIAERL-DNNTSLETISIDSCKNLVSF---PEGGLPCAKLRTLAISNCKRLEALP---KGLHNLT 502 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~ 502 (676)
.+++.|++++|. +..+|..+ ..+++|++|++++|.....+ +..+..+++|+.|++++|. +..++ ..+..++
T Consensus 310 ~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCT
T ss_pred ccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCC
Confidence 466667776654 33444433 45677777777777433323 2234556777777777754 33332 2356677
Q ss_pred CccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCC
Q 005813 503 SLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTL 582 (676)
Q Consensus 503 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~ 582 (676)
+|++|++++| .+..+|..+..+++|++|++++|....... .-.++|+.|++++| .+..++.
T Consensus 388 ~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-------~~~~~L~~L~Ls~N--~l~~~~~--------- 448 (549)
T 2z81_A 388 NLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-------CIPQTLEVLDVSNN--NLDSFSL--------- 448 (549)
T ss_dssp TCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCT-------TSCTTCSEEECCSS--CCSCCCC---------
T ss_pred CCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccc-------hhcCCceEEECCCC--Chhhhcc---------
Confidence 7777777776 344566566667777777777776543221 11256777777776 5554432
Q ss_pred CCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCC--ccccceeeecCCh
Q 005813 583 PLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGCP 644 (676)
Q Consensus 583 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~ 644 (676)
.+++|+.|++++ +.++.+|. ...+++|++|++++| +++.++...+ .++|++|++++||
T Consensus 449 -~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 449 -FLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp -CCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred -cCChhcEEECCC-CccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 336777777777 56777764 456777777777776 5666665433 5677777777766
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=280.91 Aligned_cols=497 Identities=17% Similarity=0.150 Sum_probs=287.4
Q ss_pred ccEEEEeCCCCCCCCCC-cCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcceEEecccccccccccccCCCCccc
Q 005813 33 LATLNFEDCSVCTTLPS-VGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRTGQGVEW 111 (676)
Q Consensus 33 L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 111 (676)
.++++.++ ..++++|. +. .++++|++++|. ++.++...+ ..+++|+.|+++++. +....... +..
T Consensus 9 ~~~~~c~~-~~l~~ip~~l~--~~l~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n~-i~~i~~~~----~~~ 74 (570)
T 2z63_A 9 NITYQCME-LNFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSF-----FSFPELQVLDLSRCE-IQTIEDGA----YQS 74 (570)
T ss_dssp TTEEECCS-SCCSSCCSSSC--SSCCEEECCSCC-CCEECTTTT-----TTCSSCCEEECTTCC-CCEECTTT----TTT
T ss_pred CcEEEeCC-CCccccCCCcc--ccccEEEccCCc-cCccChhHh-----hCCCCceEEECCCCc-CCccCccc----ccC
Confidence 34555555 36788884 33 579999999995 888875543 458999999998873 33322211 226
Q ss_pred CCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEEEcCCCCeeEEeeccccCCCcceeecCCCC
Q 005813 112 FPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSN 191 (676)
Q Consensus 112 ~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (676)
+++|+.|+++++. +....|. .+..+++|++|+++++......
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~------------------~~~~l~~L~~L~L~~n~l~~l~------------------- 116 (570)
T 2z63_A 75 LSHLSTLILTGNP-IQSLALG------------------AFSGLSSLQKLVAVETNLASLE------------------- 116 (570)
T ss_dssp CTTCCEEECTTCC-CCEECTT------------------TTTTCTTCCEEECTTSCCCCST-------------------
T ss_pred chhCCEEeCcCCc-CCccCHh------------------hhcCccccccccccccccccCC-------------------
Confidence 7888888888763 3322222 1333444444444444321110
Q ss_pred ceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcc----
Q 005813 192 QVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRL---- 267 (676)
Q Consensus 192 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L---- 267 (676)
......+++|+.|+++++..... ..+..+..+++|++|+++++ .++.+++. .+..+ .+|
T Consensus 117 -----~~~~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~~~ 179 (570)
T 2z63_A 117 -----NFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSN-KIQSIYCT----DLRVL----HQMPLLN 179 (570)
T ss_dssp -----TCSCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECTTS-CCCEECGG----GGHHH----HTCTTCC
T ss_pred -----CccccccccccEEecCCCcccee---cChhhhcccCCCCEEeCcCC-ccceecHH----Hccch----hccchhh
Confidence 00123345555555555443220 11233455566666666653 34443332 12333 334
Q ss_pred eEEEecCCCCcccccccccCCCCCceEeecCCCCCC-CCCC-ccCCCCccEEeeccc-----cCcCcCchhhccCCCC--
Q 005813 268 EYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLV-SFPE-VALPSKLRKIEIRYC-----DALKSLPEAWMCDTNS-- 338 (676)
Q Consensus 268 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~-~~~~-~~~~~~L~~L~l~~~-----~~l~~~~~~~~~~~l~-- 338 (676)
++|++++|......+..+..+ +|++|+++++.... .++. ...+.+++...+... ..+..++...+ ..++
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~-~~l~~l 257 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL-EGLCNL 257 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT-GGGGGS
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh-cccccc
Confidence 556666554332233333333 56666665542110 0000 111223332222110 00111111110 1111
Q ss_pred CccEEeecccccccccccc--cCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCc
Q 005813 339 SLEILHIYGCRSLTYIAAV--QVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNEL 416 (676)
Q Consensus 339 ~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 416 (676)
.++.+++.++..+...... ...++++.+++.++ .+..++ .. .... +|++|++.+|.-. . ++...
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~--~~-------~~~~-~L~~L~l~~n~~~-~-l~~~~- 323 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVK--DF-------SYNF-GWQHLELVNCKFG-Q-FPTLK- 323 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCC--BC-------CSCC-CCSEEEEESCBCS-S-CCBCB-
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhh--hh-------hccC-CccEEeeccCccc-c-cCccc-
Confidence 2334444433222221111 11234556665553 223332 11 1112 5777777665422 2 22222
Q ss_pred chhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcccc---CCCCCCCCCccEEEeecCcCccc
Q 005813 417 PATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSF---PEGGLPCAKLRTLAISNCKRLEA 493 (676)
Q Consensus 417 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~ 493 (676)
.++|+.|++.++......+. ..+++|++|++++|. +... +..+..+++|+.|++++|. +..
T Consensus 324 ------------l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 387 (570)
T 2z63_A 324 ------------LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VIT 387 (570)
T ss_dssp ------------CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEE
T ss_pred ------------ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-ccc
Confidence 26889999988765544432 679999999999984 4433 4456678999999999976 444
Q ss_pred ccccccCCCCccceeeeccCCCCCCC-cCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccc--c
Q 005813 494 LPKGLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMV--S 570 (676)
Q Consensus 494 ~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~--~ 570 (676)
++..+..+++|++|++++|......+ ..+..+++|++|++++|......+ ..+.++++|+.|++++| .+. .
T Consensus 388 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~ 461 (570)
T 2z63_A 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGN--SFQENF 461 (570)
T ss_dssp EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT----TTTTTCTTCCEEECTTC--EEGGGE
T ss_pred ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch----hhhhcCCcCcEEECcCC--cCcccc
Confidence 55558899999999999976544333 357889999999999998776554 35889999999999998 554 3
Q ss_pred cccccccccCCCCCCCCccEEeecCCCCcccc-hhhcCCCCCccEEEeCCCCCccccCCCCC--ccccceeeecCChh
Q 005813 571 FPLEDKRLGTTLPLPASLTSLGISNFPNLERL-SSSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGCPL 645 (676)
Q Consensus 571 i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~~ 645 (676)
+|. .+..+++|+.|++++ +.++.+ |..+..+++|++|++++| +++.++...+ .++|++|++++||.
T Consensus 462 ~p~-------~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 462 LPD-------IFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECS-------CCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred chh-------hhhcccCCCEEECCC-CccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 443 234569999999999 567766 668999999999999998 6888877554 68999999999873
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-28 Score=284.49 Aligned_cols=525 Identities=16% Similarity=0.108 Sum_probs=330.4
Q ss_pred eEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcc
Q 005813 10 QFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLE 87 (676)
Q Consensus 10 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~ 87 (676)
..+.+++....+|. +. ++|++|+++++ .++.++ .++++++|++|++++|..+..++.+.+ ..+++|+
T Consensus 8 ~~dcs~~~L~~vP~-lp----~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f-----~~L~~L~ 76 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-VL----NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF-----RNLPNLR 76 (844)
T ss_dssp EEEESCCCSSCCCS-SC----TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTT-----SSCTTCC
T ss_pred EEEccCCCCCCCCC-CC----CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHh-----cCCCCCC
Confidence 45566666666776 43 67888888874 666664 578888888888888865666644333 3466677
Q ss_pred eEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEEEcCCC
Q 005813 88 TLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFEIGGCK 167 (676)
Q Consensus 88 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~l~~~~ 167 (676)
.|+++++. +..... ..+..+++|++|++++| .+.+..|. ...+..+++|++|++++|.
T Consensus 77 ~L~Ls~N~-l~~~~p----~~~~~l~~L~~L~Ls~n-~l~~~~~~----------------~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 77 ILDLGSSK-IYFLHP----DAFQGLFHLFELRLYFC-GLSDAVLK----------------DGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp EEECTTCC-CCEECT----TSSCSCSSCCCEECTTC-CCSSCCST----------------TCCCSSCSSCCEEEEESCC
T ss_pred EEECCCCc-CcccCH----hHccCCcccCEeeCcCC-CCCccccc----------------CccccccCCCCEEECCCCc
Confidence 77766543 211111 11224555666665554 22211111 0125678899999999986
Q ss_pred CeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccC--CCccEEEeccCCCc
Q 005813 168 KVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDI--CSLKRLTIRRCPKI 245 (676)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~~L~~L~l~~c~~l 245 (676)
....... ..+..+++|+.|+++++.... .....+..+ ++|+.|++.++...
T Consensus 135 l~~~~~~-----------------------~~~~~L~~L~~L~Ls~N~i~~----~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 135 IRSLYLH-----------------------PSFGKLNSLKSIDFSSNQIFL----VCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCCCCCC-----------------------GGGGTCSSCCEEEEESSCCCC----CCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred ccccccc-----------------------hhHhhCCCCCEEECCCCcCCe----eCHHHcccccCCccceEECCCCccc
Confidence 5432211 124567889999998876543 222333444 78899999886432
Q ss_pred cccchhhhhhHHHHHhh--cCCcceEEEecCCCCccccccccc---CCCCCceEeecCCCC--------CCCCCC--cc-
Q 005813 246 QSLVAEEEKDQQQQLCE--LSCRLEYLRLSECKGLVKLPQSSL---SLSSLREIEICSCHS--------LVSFPE--VA- 309 (676)
Q Consensus 246 ~~l~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~l~~l~~~~~---~l~~L~~L~l~~~~~--------l~~~~~--~~- 309 (676)
...+.. +..... ....|++|++++|......+..+. ...+++.|.+..+.. +..... ..
T Consensus 188 ~~~~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 188 SRVSVD-----WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CCCCCC-----CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred cccccc-----hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 222111 111000 002488999988754444444332 235677777763221 111111 11
Q ss_pred -CCCCccEEeeccccCcCcCchhhccCCCCCccEEeeccccccccccccc--CCCCCcEEEEeccCCccccccccccccc
Q 005813 310 -LPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQ--VPSSLKLLTIWHCDNIRTLTVEEGIQCS 386 (676)
Q Consensus 310 -~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 386 (676)
..++|+.|++++|. +..++...+ ..+++|+.|++++ +.++.++... ..++|+.|+++++. +..+..
T Consensus 263 l~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------- 331 (844)
T 3j0a_A 263 LARSSVRHLDLSHGF-VFSLNSRVF-ETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNL-LGELYS------- 331 (844)
T ss_dssp TTTSCCCEEECTTCC-CCEECSCCS-SSCCCCCEEEEES-CCCCEECTTTTTTCSSCCEEEEESCC-CSCCCS-------
T ss_pred cccCCccEEECCCCc-ccccChhhh-hcCCCCCEEECCC-CcCCCCChHHhcCCCCCCEEECCCCC-CCccCH-------
Confidence 14789999999987 555544333 7789999999988 4566554432 23679999998853 433321
Q ss_pred cCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCC
Q 005813 387 SGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKN 466 (676)
Q Consensus 387 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 466 (676)
..+..+++|+.|+++++. +.. ++...+. -.++|+.|++++|... . +..+++|+.|++++| .
T Consensus 332 -~~~~~l~~L~~L~L~~N~-i~~-~~~~~~~----------~l~~L~~L~Ls~N~l~-~----i~~~~~L~~L~l~~N-~ 392 (844)
T 3j0a_A 332 -SNFYGLPKVAYIDLQKNH-IAI-IQDQTFK----------FLEKLQTLDLRDNALT-T----IHFIPSIPDIFLSGN-K 392 (844)
T ss_dssp -CSCSSCTTCCEEECCSCC-CCC-CCSSCSC----------SCCCCCEEEEETCCSC-C----CSSCCSCSEEEEESC-C
T ss_pred -HHhcCCCCCCEEECCCCC-CCc-cChhhhc----------CCCCCCEEECCCCCCC-c----ccCCCCcchhccCCC-C
Confidence 123346689999998863 333 2222221 1378999999987643 2 334789999999988 5
Q ss_pred ccccCCCCCCCCCccEEEeecCcCccccc--ccccCCCCccceeeeccCCCCCCC-cCCCCCCccceeeccCcchhhhhh
Q 005813 467 LVSFPEGGLPCAKLRTLAISNCKRLEALP--KGLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSM 543 (676)
Q Consensus 467 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 543 (676)
+..+|.. ..+++.|++++|. +..++ ..+..+++|+.|++++|......+ .....+++|+.|++++|.......
T Consensus 393 l~~l~~~---~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 393 LVTLPKI---NLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp CCCCCCC---CTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred ccccccc---ccccceeecccCc-cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 6666653 4578999999865 33332 235689999999999976443222 134568999999999998753322
Q ss_pred hh-ccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCC
Q 005813 544 IE-RGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPK 622 (676)
Q Consensus 544 ~~-~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 622 (676)
.. ....+.++++|+.|++++| .+..++... +..+++|+.|++++ +.++.++..... ++|+.|++++| +
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~N-~ 537 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHN--YLNSLPPGV------FSHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDISRN-Q 537 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHH--HHTTCCTTS------SSSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEEE-C
T ss_pred cccchhhhcCcccccEEECCCC--cccccChhH------ccchhhhheeECCC-CCCCccChhhhh-ccccEEECCCC-c
Confidence 10 0124788999999999998 888777543 34569999999999 789888763333 89999999998 6
Q ss_pred ccccCCCCCccccceeeecCChh
Q 005813 623 LKYFPEKGLPSSLLRLYIVGCPL 645 (676)
Q Consensus 623 l~~i~~~~l~~~L~~L~i~~c~~ 645 (676)
++.++...+ ++|+.+++.+||.
T Consensus 538 l~~~~~~~~-~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 538 LLAPNPDVF-VSLSVLDITHNKF 559 (844)
T ss_dssp CCCCCSCCC-SSCCEEEEEEECC
T ss_pred CCCCChhHh-CCcCEEEecCCCc
Confidence 777766444 6899999998773
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.1e-29 Score=277.01 Aligned_cols=478 Identities=16% Similarity=0.168 Sum_probs=285.5
Q ss_pred CCCCceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCC
Q 005813 5 HENLEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIP 82 (676)
Q Consensus 5 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 82 (676)
|+...+.+.+++....+|..++ ++|++|+++++ .++.++ .++++++|++|++++|. ++.++.+.+ ..
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~----~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-----~~ 72 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT----AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAF-----YS 72 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC----TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTT-----TT
T ss_pred CCCCceEECCCCccccccccCC----CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhc-----cc
Confidence 3444556667777888888664 78999999996 677775 58999999999999994 888875544 35
Q ss_pred CCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccC---CCCCCccEEEEcCCcChh----hcccCC
Q 005813 83 FPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFP---EHLPALEMLAIEGCEELL----VSVASL 155 (676)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~L~~L~i~~~~~~~----~~~~~~ 155 (676)
+++|+.|+++++. +....... +..+++|++|+++++.--....| ..+++|+.|++++|.... ..+..+
T Consensus 73 l~~L~~L~Ls~n~-l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 73 LGSLEHLDLSDNH-LSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp CTTCCEEECTTSC-CCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred cccCCEEECCCCc-cCccCHHH----hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 8999999998874 33322211 22689999999998743221122 345677777777765322 235567
Q ss_pred CceeEEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCcc
Q 005813 156 PALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLK 235 (676)
Q Consensus 156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 235 (676)
++|++|+++++......+ .....+++|++|+++++.... .+...+..+++|+
T Consensus 148 ~~L~~L~L~~n~l~~~~~------------------------~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~ 199 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQS------------------------QSLKSIRDIHHLTLHLSESAF----LLEIFADILSSVR 199 (549)
T ss_dssp CEEEEEEEEETTCCEECT------------------------TTTTTCSEEEEEEEECSBSTT----HHHHHHHSTTTBS
T ss_pred cccCeeeccCCcccccCh------------------------hhhhccccCceEecccCcccc----cchhhHhhccccc
Confidence 777777777765433221 123345566666666655422 3333444566666
Q ss_pred EEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccc----ccccccCCCCCceEeecCCCCCCCCCCccCC
Q 005813 236 RLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVK----LPQSSLSLSSLREIEICSCHSLVSFPEVALP 311 (676)
Q Consensus 236 ~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 311 (676)
+|+++++ .++.+.... ..+...+++|+.|+++++..... ++..+..+++|+.+++++|.. ..++...
T Consensus 200 ~L~L~~n-~l~~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~-~~~~~~~-- 270 (549)
T 2z81_A 200 YLELRDT-NLARFQFSP-----LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL-NGLGDFN-- 270 (549)
T ss_dssp EEEEESC-BCTTCCCCC-----CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE-ECCSCCC--
T ss_pred EEEccCC-ccccccccc-----cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc-ccccccc--
Confidence 6666664 233221000 00001125556666655432211 222334455555555555431 1111100
Q ss_pred CCccEEeeccccCcCcCchhhccCCCCCccEEeeccccccccccc-------ccCCCCCcEEEEeccCCccccccccccc
Q 005813 312 SKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAA-------VQVPSSLKLLTIWHCDNIRTLTVEEGIQ 384 (676)
Q Consensus 312 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-------~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 384 (676)
......+ ..+++|+.+++.++. +..... .....+++.+++.++ .+..++
T Consensus 271 ---------------~~~~~~~-~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip------ 326 (549)
T 2z81_A 271 ---------------PSESDVV-SELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVP------ 326 (549)
T ss_dssp ---------------CCTTTCC-CCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCC------
T ss_pred ---------------ccchhhh-hhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccC-ccccCC------
Confidence 0000000 334555555555432 111100 011123444444442 122222
Q ss_pred cccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHH---hhccCCccceeec
Q 005813 385 CSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAE---RLDNNTSLETISI 461 (676)
Q Consensus 385 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~L~~L~l 461 (676)
..+.. -.++|++|++++|.....++. .+..+++|++|++
T Consensus 327 ---------------------------------~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 327 ---------------------------------CSFSQ-----HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp ---------------------------------HHHHH-----HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred ---------------------------------HHHHh-----cCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 11100 025677777777665554432 2566778888888
Q ss_pred cCCCCccccC---CCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcch
Q 005813 462 DSCKNLVSFP---EGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNME 538 (676)
Q Consensus 462 ~~~~~l~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~ 538 (676)
++| .++.++ ..+..+++|+.|++++|. +..+|..+..+++|++|++++|. +..++. ..+++|++|++++|..
T Consensus 369 s~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~--~~~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 369 SQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKT--CIPQTLEVLDVSNNNL 443 (549)
T ss_dssp TTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCT--TSCTTCSEEECCSSCC
T ss_pred cCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccc--hhcCCceEEECCCCCh
Confidence 877 454443 235567788888888864 45677777778888888888865 444442 2347899999999976
Q ss_pred hhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEe
Q 005813 539 IWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYL 617 (676)
Q Consensus 539 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l 617 (676)
.. ....+++|+.|++++| .+..+|... .+++|+.|++++ +.++.++. .+..+++|++|++
T Consensus 444 ~~--------~~~~l~~L~~L~Ls~N--~l~~ip~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 444 DS--------FSLFLPRLQELYISRN--KLKTLPDAS--------LFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp SC--------CCCCCTTCCEEECCSS--CCSSCCCGG--------GCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEEC
T ss_pred hh--------hcccCChhcEEECCCC--ccCcCCCcc--------cCccCCEEecCC-CccCCcCHHHHhcCcccCEEEe
Confidence 54 2357899999999998 888888643 358999999999 67887765 6899999999999
Q ss_pred CCCC
Q 005813 618 ADCP 621 (676)
Q Consensus 618 ~~c~ 621 (676)
++|+
T Consensus 505 ~~N~ 508 (549)
T 2z81_A 505 HTNP 508 (549)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9996
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=270.66 Aligned_cols=173 Identities=19% Similarity=0.249 Sum_probs=108.5
Q ss_pred CccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCC--CCCcCCCCCCcccee
Q 005813 454 TSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALP--SLEEEDDLPTNLQSL 531 (676)
Q Consensus 454 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~L~~L 531 (676)
++|+.|++++|. +...+. ...+++|+.|++++|.....+|..+..+++|++|++++|.... .++..++.+++|++|
T Consensus 302 ~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 302 MNIKNFTVSGTR-MVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred CceeEEEcCCCc-cccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 456666666663 222221 1355667777777666555455566667777777777654322 223345666777777
Q ss_pred eccCcchhhhhhhhccccccccccccEEEEecCCCcccc-cccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCC
Q 005813 532 NIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVS-FPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQ 610 (676)
Q Consensus 532 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~-i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 610 (676)
++++|......+. ..+..+++|+.|++++| .+.. ++.. .+++|+.|++++ +.++.+|..+..++
T Consensus 380 ~Ls~N~l~~~l~~---~~~~~l~~L~~L~Ls~N--~l~~~~~~~---------l~~~L~~L~Ls~-N~l~~ip~~~~~l~ 444 (520)
T 2z7x_B 380 DISQNSVSYDEKK---GDCSWTKSLLSLNMSSN--ILTDTIFRC---------LPPRIKVLDLHS-NKIKSIPKQVVKLE 444 (520)
T ss_dssp ECCSSCCBCCGGG---CSCCCCTTCCEEECCSS--CCCGGGGGS---------CCTTCCEEECCS-SCCCCCCGGGGGCT
T ss_pred ECCCCcCCccccc---chhccCccCCEEECcCC--CCCcchhhh---------hcccCCEEECCC-CcccccchhhhcCC
Confidence 7777766552221 23667777888888876 4432 2211 236788888888 57778877667888
Q ss_pred CccEEEeCCCCCccccCCCCC--ccccceeeecCCh
Q 005813 611 NLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGCP 644 (676)
Q Consensus 611 ~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~ 644 (676)
+|++|++++| +++.+|...+ .++|++|++++||
T Consensus 445 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 445 ALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 8888888887 6777776533 5778888888876
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.1e-27 Score=267.24 Aligned_cols=513 Identities=16% Similarity=0.109 Sum_probs=288.3
Q ss_pred ccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcceEEec
Q 005813 15 GYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFE 92 (676)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~ 92 (676)
+.....+|..++ .++++|+|++ +.++.+| +|+++++|++|+|++| .++.++.+.++ .+++|++|+++
T Consensus 40 ~~~l~~vP~~lp----~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~-----~L~~L~~L~Ls 108 (635)
T 4g8a_A 40 ELNFYKIPDNLP----FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ-----SLSHLSTLILT 108 (635)
T ss_dssp TSCCSSCCSSSC----TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT-----TCTTCCEEECT
T ss_pred CCCcCccCCCCC----cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhc-----CCCCCCEEEcc
Confidence 334455666654 4677777776 4677776 4777777777777777 37777655433 37777777777
Q ss_pred ccccccccccccCCCCcccCCcccEEEEccCCCcccccC---CCCCCccEEEEcCCcChh----hcccCCCceeEEEEcC
Q 005813 93 NMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFP---EHLPALEMLAIEGCEELL----VSVASLPALCKFEIGG 165 (676)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~L~~L~i~~~~~~~----~~~~~~~~L~~L~l~~ 165 (676)
++. +....... +..+++|++|+++++ .+....+ ..+++|+.|+++++.... ..+..+++|++|++++
T Consensus 109 ~N~-l~~l~~~~----f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 109 GNP-IQSLALGA----FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TCC-CCEECGGG----GTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCc-CCCCCHHH----hcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 653 33332211 125777777777776 3332221 345677777777765332 2355678888888888
Q ss_pred CCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCc
Q 005813 166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKI 245 (676)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 245 (676)
+.............. ........+.++.+.... ++... .....++.+++.+...-
T Consensus 183 N~l~~~~~~~l~~L~--------------------~l~~~~~~~~ls~n~l~~----i~~~~-~~~~~~~~l~l~~n~~~ 237 (635)
T 4g8a_A 183 NKIQSIYCTDLRVLH--------------------QMPLLNLSLDLSLNPMNF----IQPGA-FKEIRLHKLTLRNNFDS 237 (635)
T ss_dssp SCCCEECGGGGHHHH--------------------TCTTCCCEEECTTCCCCE----ECTTT-TTTCEEEEEEEESCCSS
T ss_pred ccccccccccccchh--------------------hhhhhhhhhhcccCcccc----cCccc-ccchhhhhhhhhccccc
Confidence 765544322110000 000111223333322211 11111 12223344444432111
Q ss_pred cccchhhhhhHHHHHhhcCCcceEEEecCC--CC---ccc-ccccccCCCCCceEeecCCCCCC---C-CCCccCCCCcc
Q 005813 246 QSLVAEEEKDQQQQLCELSCRLEYLRLSEC--KG---LVK-LPQSSLSLSSLREIEICSCHSLV---S-FPEVALPSKLR 315 (676)
Q Consensus 246 ~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~---l~~-l~~~~~~l~~L~~L~l~~~~~l~---~-~~~~~~~~~L~ 315 (676)
..+.. ..+..+ ..++...+... .. +.. ....+..+..+....+..+.... . ........+++
T Consensus 238 ~~~~~----~~~~~l----~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 238 LNVMK----TCIQGL----AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309 (635)
T ss_dssp HHHHH----HHHHTT----TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred ccccc----hhhcCC----cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence 11100 011111 33433333211 11 111 11123333444444443321111 1 11122355666
Q ss_pred EEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCC
Q 005813 316 KIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSF 395 (676)
Q Consensus 316 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 395 (676)
.+.+.++. +..+... .....|+.|++.++ .+..++...+ ..++.+.+..... ...
T Consensus 310 ~l~~~~~~-~~~~~~~---~~~~~L~~L~l~~~-~~~~~~~~~l-~~L~~l~l~~n~~-~~~------------------ 364 (635)
T 4g8a_A 310 SFSLVSVT-IERVKDF---SYNFGWQHLELVNC-KFGQFPTLKL-KSLKRLTFTSNKG-GNA------------------ 364 (635)
T ss_dssp EEEEESCE-EEECGGG---GSCCCCSEEEEESC-EESSCCCCBC-TTCCEEEEESCCS-CCB------------------
T ss_pred cccccccc-ccccccc---ccchhhhhhhcccc-cccCcCcccc-hhhhhcccccccC-CCC------------------
Confidence 66666655 3333332 34556677777664 2333322222 2244444443211 000
Q ss_pred cCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCCh--hhHHHhhccCCccceeeccCCCCccccCCC
Q 005813 396 LEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKL--ESIAERLDNNTSLETISIDSCKNLVSFPEG 473 (676)
Q Consensus 396 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 473 (676)
+.... .++++.++++.+... ...+.....+.+|+.+++..+ .....+..
T Consensus 365 ---------------~~~~~-------------l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~ 415 (635)
T 4g8a_A 365 ---------------FSEVD-------------LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSN 415 (635)
T ss_dssp ---------------CCCCB-------------CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSC
T ss_pred ---------------ccccc-------------ccccccchhhccccccccccccchhhhhhhhhhhcccc-cccccccc
Confidence 00000 145666666654432 122334456788899988887 44455566
Q ss_pred CCCCCCccEEEeecCcCccccc-ccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccc
Q 005813 474 GLPCAKLRTLAISNCKRLEALP-KGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHR 552 (676)
Q Consensus 474 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 552 (676)
+..+++|+.+++.++......+ ..+..+++++.++++++......+..+..+++|+.|++++|.......+ ..+..
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~~~~ 492 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTE 492 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTT
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc---hhhhh
Confidence 7778899999998876555443 3467788899999888766555566678889999999999976554332 35888
Q ss_pred cccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCCCccccCCCCC
Q 005813 553 FSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCPKLKYFPEKGL 631 (676)
Q Consensus 553 l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~~~~l 631 (676)
+++|+.|++++| .+..++... +..+++|+.|++++ ++++.++. .+..+++|++|++++| +++.++...+
T Consensus 493 l~~L~~L~Ls~N--~L~~l~~~~------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l 562 (635)
T 4g8a_A 493 LRNLTFLDLSQC--QLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQEL 562 (635)
T ss_dssp CTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCT
T ss_pred ccccCEEECCCC--ccCCcChHH------HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHH
Confidence 999999999998 787776432 34558999999999 68888765 7889999999999998 6888776544
Q ss_pred ---ccccceeeecCCh
Q 005813 632 ---PSSLLRLYIVGCP 644 (676)
Q Consensus 632 ---~~~L~~L~i~~c~ 644 (676)
+++|++|++++||
T Consensus 563 ~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCCTTCCEEECTTCC
T ss_pred HhhhCcCCEEEeeCCC
Confidence 4789999999876
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=9.9e-28 Score=268.18 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=61.6
Q ss_pred hccCCCccEEEeccCCCccc--cchhhhhhHHHHHh--hcCCcceEEEecCCCCcccccc--cccCCCCCceEeecCCCC
Q 005813 228 LQDICSLKRLTIRRCPKIQS--LVAEEEKDQQQQLC--ELSCRLEYLRLSECKGLVKLPQ--SSLSLSSLREIEICSCHS 301 (676)
Q Consensus 228 ~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~l~~l~--~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~~~~ 301 (676)
+..+++|++|+++++..++. ++.. +..+. ..+++|++|++++|. +..+|. .+..+++|++|++++|..
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~-----~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDD-----WQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHH-----HHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCCCEEECcCCCCCccccchHH-----HHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcC
Confidence 45555666666665432432 2221 22210 112666777776654 336666 666777777777776543
Q ss_pred CCCCCCccCCCCccEEeeccccCcCcCchhhccCCCCC-ccEEeecc
Q 005813 302 LVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSS-LEILHIYG 347 (676)
Q Consensus 302 l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~ 347 (676)
...+|....+++|+.|++++|. +..+|..+ ..+++ |+.|++++
T Consensus 343 ~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l--~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 343 EGKLPAFGSEIKLASLNLAYNQ-ITEIPANF--CGFTEQVENLSFAH 386 (636)
T ss_dssp EEECCCCEEEEEESEEECCSSE-EEECCTTS--EEECTTCCEEECCS
T ss_pred ccchhhhCCCCCCCEEECCCCc-cccccHhh--hhhcccCcEEEccC
Confidence 3255544446677777777666 55555544 45566 66666666
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.6e-27 Score=256.97 Aligned_cols=454 Identities=13% Similarity=0.069 Sum_probs=261.2
Q ss_pred ceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCc
Q 005813 9 EQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCL 86 (676)
Q Consensus 9 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (676)
++|+++++....+|..++ ++|++|++++| .+..++ .++++++|++|++++|. +++++.+.+ ..+++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~----~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS----QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVF-----KFNQEL 71 (520)
T ss_dssp CEEECTTSCCSSCCCSCC----TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGG-----TTCTTC
T ss_pred ceEecCCCCccccccccc----ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHh-----hcccCC
Confidence 578999999989998764 89999999996 788887 59999999999999995 888754443 348999
Q ss_pred ceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCC---CCCCccEEEEcCCcChhhcccCCCce--eEE
Q 005813 87 ETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPE---HLPALEMLAIEGCEELLVSVASLPAL--CKF 161 (676)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~L~~L~i~~~~~~~~~~~~~~~L--~~L 161 (676)
+.|+++++. +...... .+++|++|+++++.--...+|. .+++|++|+++++......+..+++| +.|
T Consensus 72 ~~L~Ls~N~-l~~lp~~-------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 72 EYLDLSHNK-LVKISCH-------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143 (520)
T ss_dssp CEEECCSSC-CCEEECC-------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEE
T ss_pred CEEecCCCc-eeecCcc-------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEE
Confidence 999998863 3332221 5889999999987433212443 46788888888887666667777777 888
Q ss_pred EEcCCCC--eeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCc----ceEeecCCCCchhhhhccchhhccCCCcc
Q 005813 162 EIGGCKK--VVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKL----EELGINNMKNETHIWKSHNELLQDICSLK 235 (676)
Q Consensus 162 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 235 (676)
++.+|.. .... ...+..+ ..+.+.++..... .+...+..+++|+
T Consensus 144 ~l~~n~l~~~~~~---------------------------~~~l~~l~~~~l~l~l~~n~~~~~---~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 144 LLVLGETYGEKED---------------------------PEGLQDFNTESLHIVFPTNKEFHF---ILDVSVKTVANLE 193 (520)
T ss_dssp EEEECTTTTSSCC---------------------------TTTTTTCCEEEEEEECCSSSCCCC---CCCCCCTTCSEEE
T ss_pred Eeecccccccccc---------------------------cccccccccceEEEEeccCcchhh---hhhhhhhccccee
Confidence 8888764 1111 1122332 2445555554433 4444555666667
Q ss_pred EEEeccCCC---ccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCccCCC
Q 005813 236 RLTIRRCPK---IQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVALPS 312 (676)
Q Consensus 236 ~L~l~~c~~---l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 312 (676)
.|+++++.. ...+... .+.+.. +++|+.|+++++......+.. ++.....+
T Consensus 194 ~L~l~~n~~~~~~~~~~~~--~~~l~~----l~~L~~L~l~~~~l~~~~~~~--------------------~~~~~~~~ 247 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSI--LAKLQT----NPKLSNLTLNNIETTWNSFIR--------------------ILQLVWHT 247 (520)
T ss_dssp ECCEEECCSTTTTHHHHHH--HHGGGG----CTTCCEEEEEEEEEEHHHHHH--------------------HHHHHHTS
T ss_pred eccccccccccccceeecc--hhhhcc----ccchhhccccccccCHHHHHH--------------------HHHHhhhC
Confidence 666666431 1111000 001111 244555554443211110000 00001123
Q ss_pred CccEEeeccccCcCcCchhhcc---CCCCCccEEeecccccccccccccCCCCCcEEEEeccCCccccccccccccccCC
Q 005813 313 KLRKIEIRYCDALKSLPEAWMC---DTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGR 389 (676)
Q Consensus 313 ~L~~L~l~~~~~l~~~~~~~~~---~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 389 (676)
+|++|++++|.....+|..++. ..+++|+.++++++. + .++...+. ..
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~~~~~---------------~~------------ 298 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQSYIY---------------EI------------ 298 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-C-CSCTHHHH---------------HH------------
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccc-e-ecchhhhh---------------cc------------
Confidence 4555555554421133332211 234445555544422 1 11100000 00
Q ss_pred ccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccc
Q 005813 390 RYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVS 469 (676)
Q Consensus 390 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~ 469 (676)
+...+|+.|+++++ ...... ....+++|++|++++|.....
T Consensus 299 -~~~~~L~~L~l~~n------------------------------------~l~~~~--~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 299 -FSNMNIKNFTVSGT------------------------------------RMVHML--CPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp -HHTCCCSEEEEESS------------------------------------CCCCCC--CCSSCCCCCEEECCSSCCCTT
T ss_pred -cccCceeEEEcCCC------------------------------------cccccc--chhhCCcccEEEeECCccChh
Confidence 00001222222222 111000 012355566666666533333
Q ss_pred cCCCCCCCCCccEEEeecCcCcc--cccccccCCCCccceeeeccCCCCCCCc-CCCCCCccceeeccCcchhhhhhhhc
Q 005813 470 FPEGGLPCAKLRTLAISNCKRLE--ALPKGLHNLTSLQQLTIGIGGALPSLEE-EDDLPTNLQSLNIWGNMEIWKSMIER 546 (676)
Q Consensus 470 ~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~ 546 (676)
.|..+..+++|+.|++++|.... .+|..+..+++|++|++++|.....++. .+..+++|++|++++|......+.
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-- 417 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-- 417 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG--
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh--
Confidence 44555556666666666655332 3344566777777777777654443443 256677888888888876544331
Q ss_pred cccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhh-cCCCCCccEEEeCCCC
Q 005813 547 GRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSS-IVDLQNLTELYLADCP 621 (676)
Q Consensus 547 ~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 621 (676)
.+. ++|+.|++++| .+..+|..... +++|+.|++++ +.++.+|.. +..+++|++|++++|+
T Consensus 418 --~l~--~~L~~L~Ls~N--~l~~ip~~~~~-------l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 418 --CLP--PRIKVLDLHSN--KIKSIPKQVVK-------LEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp --SCC--TTCCEEECCSS--CCCCCCGGGGG-------CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --hhc--ccCCEEECCCC--cccccchhhhc-------CCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 121 68999999998 78888765533 38899999999 688888875 8899999999999986
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.7e-27 Score=267.95 Aligned_cols=366 Identities=15% Similarity=0.197 Sum_probs=188.3
Q ss_pred CceEeCCccCCCCCCCCCCCcceEEecccccccc------cccc-------cCCCCcc--cCCcccEEEEccCCCccccc
Q 005813 66 RVKSLGSEFYGNDSPIPFPCLETLRFENMQEWED------WIPL-------RTGQGVE--WFPKLRELHIIRCSKLQGTF 130 (676)
Q Consensus 66 ~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~------~~~~-------~~~~~~~--~~~~L~~L~l~~c~~l~~~~ 130 (676)
.++.||..+ ..+++|+.|+++++. +.. |... .++..+. .+++|+.|++++|.... .+
T Consensus 436 ~L~~IP~~l------~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-~i 507 (876)
T 4ecn_A 436 RITFISKAI------QRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-QL 507 (876)
T ss_dssp EEEEECGGG------GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-SC
T ss_pred cccchhHHH------hcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-cC
Confidence 466677543 358899999998865 332 0000 1333333 68999999999875443 56
Q ss_pred CC---CCCCccEEEEcCCcChh-----hcccCCCceeEEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCC
Q 005813 131 PE---HLPALEMLAIEGCEELL-----VSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPR 202 (676)
Q Consensus 131 ~~---~~~~L~~L~i~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (676)
|. .+++|+.|++++|..+. ..+..++ .....
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-----------------------------------------~~~~~ 546 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-----------------------------------------DDEDT 546 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------------------------------HCTTT
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHHHhhh-----------------------------------------hcccc
Confidence 64 24555555555554111 1111111 01123
Q ss_pred CCCcceEeecCCCCchhhhhccc-hhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccc
Q 005813 203 IPKLEELGINNMKNETHIWKSHN-ELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKL 281 (676)
Q Consensus 203 ~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l 281 (676)
+++|+.|.++++... . +|. ..+..+++|+.|+++++ .++.++ . +..+ ++|+.|++++|. +..+
T Consensus 547 l~~L~~L~Ls~N~L~-~---ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-----~~~L----~~L~~L~Ls~N~-l~~l 610 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLE-E---FPASASLQKMVKLGLLDCVHN-KVRHLE-A-----FGTN----VKLTDLKLDYNQ-IEEI 610 (876)
T ss_dssp TTTCCEEECCSSCCC-B---CCCHHHHTTCTTCCEEECTTS-CCCBCC-C-----CCTT----SEESEEECCSSC-CSCC
T ss_pred cCCccEEEeeCCcCC-c---cCChhhhhcCCCCCEEECCCC-Ccccch-h-----hcCC----CcceEEECcCCc-cccc
Confidence 345555555554433 1 332 23455566666666654 333443 1 2222 666666666654 3356
Q ss_pred cccccCCCC-CceEeecCCCCCCCCCCccC-C--CCccEEeeccccCcCcCc---hhhccCCCCCccEEeeccccccccc
Q 005813 282 PQSSLSLSS-LREIEICSCHSLVSFPEVAL-P--SKLRKIEIRYCDALKSLP---EAWMCDTNSSLEILHIYGCRSLTYI 354 (676)
Q Consensus 282 ~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~-~--~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~ 354 (676)
|..+..+++ |++|++++|. +..+|.... . ++|+.|++++|.....+| .......+++|+.|+++++ .++.+
T Consensus 611 p~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l 688 (876)
T 4ecn_A 611 PEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF 688 (876)
T ss_dssp CTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC
T ss_pred hHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc
Confidence 655666666 6666666654 345554222 2 336666666665222111 1110013346666666663 34444
Q ss_pred cccc--CCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCc
Q 005813 355 AAVQ--VPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSL 432 (676)
Q Consensus 355 ~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 432 (676)
+... ..++|+.|+++++ .+..++.. ... ... ..| .. .++|
T Consensus 689 p~~~~~~l~~L~~L~Ls~N-~L~~ip~~--~~~------~~~-------~~l---------~n-------------l~~L 730 (876)
T 4ecn_A 689 PTELFATGSPISTIILSNN-LMTSIPEN--SLK------PKD-------GNY---------KN-------------TYLL 730 (876)
T ss_dssp CHHHHHTTCCCSEEECCSC-CCSCCCTT--SSS------CTT-------SCC---------TT-------------GGGC
T ss_pred CHHHHccCCCCCEEECCCC-cCCccChH--Hhc------ccc-------ccc---------cc-------------cCCc
Confidence 4332 1233555555443 22222200 000 000 000 00 0256
Q ss_pred ceEEEcCCCChhhHHHhhc--cCCccceeeccCCCCccccCCCCCCCCCccEEEeec------CcCcccccccccCCCCc
Q 005813 433 KSIRVGGCSKLESIAERLD--NNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISN------CKRLEALPKGLHNLTSL 504 (676)
Q Consensus 433 ~~L~l~~~~~l~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~l~~L 504 (676)
+.|++++|.. ..+|..+. .+++|+.|++++| .+..+|..+..+++|+.|++++ |.....+|..+..+++|
T Consensus 731 ~~L~Ls~N~L-~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 731 TTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CEEECCSSCC-CCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECCCCCC-ccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 6666666533 34555554 6777777777777 4555666666777777777765 44445566667777777
Q ss_pred cceeeeccCCCCCCCcCCCCCCccceeeccCcchhhh
Q 005813 505 QQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWK 541 (676)
Q Consensus 505 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 541 (676)
+.|++++|.. ..+|..+ .++|+.|++++|+....
T Consensus 809 ~~L~Ls~N~L-~~Ip~~l--~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 809 IQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISI 842 (876)
T ss_dssp CEEECCSSCC-CBCCSCC--CSSSCEEECCSCTTCEE
T ss_pred CEEECCCCCC-CccCHhh--cCCCCEEECCCCCCCcc
Confidence 7777777654 6666432 35777777777765543
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.5e-26 Score=256.87 Aligned_cols=335 Identities=16% Similarity=0.203 Sum_probs=235.4
Q ss_pred CcceEEEecCCCCccc-----------------cccccc--CCCCCceEeecCCCCCCCCCC-ccCCCCccEEeeccccC
Q 005813 265 CRLEYLRLSECKGLVK-----------------LPQSSL--SLSSLREIEICSCHSLVSFPE-VALPSKLRKIEIRYCDA 324 (676)
Q Consensus 265 ~~L~~L~l~~~~~l~~-----------------l~~~~~--~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~ 324 (676)
++|++|++++|..... +|..+. ++++|++|++++|.....+|. +..+++|++|++++|..
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 8888888888763332 788877 888888888888876666665 34488888888888863
Q ss_pred cC--cCchhhccCC------CCCccEEeeccccccccccc---ccCCCCCcEEEEeccCCcc-ccccccccccccCCccc
Q 005813 325 LK--SLPEAWMCDT------NSSLEILHIYGCRSLTYIAA---VQVPSSLKLLTIWHCDNIR-TLTVEEGIQCSSGRRYT 392 (676)
Q Consensus 325 l~--~~~~~~~~~~------l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~ 392 (676)
++ .+|..+ .. +++|+.|+++++ .++.++. ....++|+.|+++++. +. .++ .+..
T Consensus 286 l~~~~lp~~~--~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip----------~~~~ 351 (636)
T 4eco_A 286 ISGEQLKDDW--QALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP----------AFGS 351 (636)
T ss_dssp SCHHHHHHHH--HHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC----------CCEE
T ss_pred CccccchHHH--HhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc-Cccchh----------hhCC
Confidence 44 366554 33 378888888874 5556665 3444668888888753 33 444 1223
Q ss_pred cCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCC-cceEEEcCCCChhhHHHhhccCC--ccceeeccCCCCccc
Q 005813 393 SSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPS-LKSIRVGGCSKLESIAERLDNNT--SLETISIDSCKNLVS 469 (676)
Q Consensus 393 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~--~L~~L~l~~~~~l~~ 469 (676)
+++|++|+++++. +.. +|..+..+ ++ |+.|++++|... .+|..+..++ +|++|++++|.....
T Consensus 352 l~~L~~L~L~~N~-l~~------lp~~l~~l------~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 352 EIKLASLNLAYNQ-ITE------IPANFCGF------TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp EEEESEEECCSSE-EEE------CCTTSEEE------CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CCCCCEEECCCCc-ccc------ccHhhhhh------cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence 4578888888764 222 22222222 45 999999887644 6776665544 899999999865555
Q ss_pred cCCCCC-------CCCCccEEEeecCcCccccccc-ccCCCCccceeeeccCCCCCCCcCCCC--------CCccceeec
Q 005813 470 FPEGGL-------PCAKLRTLAISNCKRLEALPKG-LHNLTSLQQLTIGIGGALPSLEEEDDL--------PTNLQSLNI 533 (676)
Q Consensus 470 ~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~--------~~~L~~L~l 533 (676)
.|..+. .+++|+.|++++|.. ..+|.. +..+++|++|++++|... .++..... +++|++|++
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEEC
T ss_pred chhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEEC
Confidence 555555 677899999999764 466654 456889999999987544 55543322 228999999
Q ss_pred cCcchhhhhhhhcccccc--ccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecC------CCCcccchhh
Q 005813 534 WGNMEIWKSMIERGRGFH--RFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISN------FPNLERLSSS 605 (676)
Q Consensus 534 ~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~------c~~l~~l~~~ 605 (676)
++|.....+. .+. .+++|+.|++++| .+..+|.....+ ++|+.|++++ +.-...+|..
T Consensus 496 s~N~l~~lp~-----~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~~l-------~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 496 RFNKLTKLSD-----DFRATTLPYLVGIDLSYN--SFSKFPTQPLNS-------STLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CSSCCCBCCG-----GGSTTTCTTCCEEECCSS--CCSSCCCGGGGC-------SSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred cCCcCCccCh-----hhhhccCCCcCEEECCCC--CCCCcChhhhcC-------CCCCEEECCCCcccccCcccccChHH
Confidence 9998774332 344 8999999999998 777777655444 8999999954 2234577888
Q ss_pred cCCCCCccEEEeCCCCCccccCCCCCccccceeeecCChh
Q 005813 606 IVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCPL 645 (676)
Q Consensus 606 ~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~~ 645 (676)
+..+++|++|++++| .++.+|.. +.++|++|++++|+.
T Consensus 562 l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 562 ITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp GGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCTT
T ss_pred HhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCCC
Confidence 889999999999998 56888874 558999999999974
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3e-25 Score=245.37 Aligned_cols=145 Identities=14% Similarity=0.079 Sum_probs=99.0
Q ss_pred CCCCceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCC
Q 005813 5 HENLEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIP 82 (676)
Q Consensus 5 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 82 (676)
+...++++++++....+|..+. ++|++|+++++ .++.++ .++++++|++|++++|. ++.++.+.+ ..
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~----~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-----~~ 98 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP----PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVF-----LF 98 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC----TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTT-----TT
T ss_pred cCCCcEEEcCCCCCccCCCCCC----CCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHh-----CC
Confidence 3445789999998888887654 78999999885 778887 58899999999999994 888765543 34
Q ss_pred CCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccC---CCCCCccEEEEcCCcChhhcccCCCce-
Q 005813 83 FPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFP---EHLPALEMLAIEGCEELLVSVASLPAL- 158 (676)
Q Consensus 83 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~L~~L~i~~~~~~~~~~~~~~~L- 158 (676)
+++|+.|+++++. +...... .+++|++|+++++.--....| ..+++|+.|+++++......+..+++|
T Consensus 99 l~~L~~L~Ls~N~-l~~lp~~-------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~ 170 (562)
T 3a79_B 99 NQDLEYLDVSHNR-LQNISCC-------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170 (562)
T ss_dssp CTTCCEEECTTSC-CCEECSC-------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSC
T ss_pred CCCCCEEECCCCc-CCccCcc-------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhce
Confidence 8889999988764 3322211 478888888888642221122 235677777777766554445555555
Q ss_pred -eEEEEcCCCC
Q 005813 159 -CKFEIGGCKK 168 (676)
Q Consensus 159 -~~L~l~~~~~ 168 (676)
+.|+++++..
T Consensus 171 L~~L~L~~n~l 181 (562)
T 3a79_B 171 LSCILLDLVSY 181 (562)
T ss_dssp EEEEEEEESSC
T ss_pred eeEEEeecccc
Confidence 7777777643
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.1e-25 Score=255.99 Aligned_cols=337 Identities=17% Similarity=0.212 Sum_probs=204.0
Q ss_pred CcceEEEecCCCCcc-----------------ccccccc--CCCCCceEeecCCCCCCCCCC-ccCCCCccEEeeccccC
Q 005813 265 CRLEYLRLSECKGLV-----------------KLPQSSL--SLSSLREIEICSCHSLVSFPE-VALPSKLRKIEIRYCDA 324 (676)
Q Consensus 265 ~~L~~L~l~~~~~l~-----------------~l~~~~~--~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~ 324 (676)
++|++|++++|.... .+|..+. ++++|++|++++|.....+|. +..+++|+.|++++|..
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 667777776665333 1666655 677777777776665555554 33366777777776652
Q ss_pred cC--cCchhhc-----cCCCCCccEEeeccccccccccc---ccCCCCCcEEEEeccCCccccccccccccccCCccccC
Q 005813 325 LK--SLPEAWM-----CDTNSSLEILHIYGCRSLTYIAA---VQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSS 394 (676)
Q Consensus 325 l~--~~~~~~~-----~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 394 (676)
++ .+|..+. ...+++|+.|++++ +.++.+|. ....++|+.|+++++. +..++ .+..++
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp----------~~~~L~ 595 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE----------AFGTNV 595 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC----------CCCTTS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCCC-cccch----------hhcCCC
Confidence 33 2443220 02344677777766 34445554 2334556677666643 33433 122345
Q ss_pred CcCeeeeecCCCccccccCCCcchhhhccccCCCCCC-cceEEEcCCCChhhHHHhhccCC--ccceeeccCCCCccccC
Q 005813 395 FLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPS-LKSIRVGGCSKLESIAERLDNNT--SLETISIDSCKNLVSFP 471 (676)
Q Consensus 395 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~--~L~~L~l~~~~~l~~~~ 471 (676)
+|+.|+++++.-- . +|..+..+ ++ |+.|++++|.. ..+|..+..++ +|+.|++++|.....+|
T Consensus 596 ~L~~L~Ls~N~l~-~------lp~~l~~l------~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-E------IPEDFCAF------TDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp EESEEECCSSCCS-C------CCTTSCEE------CTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred cceEEECcCCccc-c------chHHHhhc------cccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 6777777765421 1 22222222 34 88888887653 35665555544 38888888874333333
Q ss_pred C---CC--CCCCCccEEEeecCcCcccccccc-cCCCCccceeeeccCCCCCCCcCCCC--------CCccceeeccCcc
Q 005813 472 E---GG--LPCAKLRTLAISNCKRLEALPKGL-HNLTSLQQLTIGIGGALPSLEEEDDL--------PTNLQSLNIWGNM 537 (676)
Q Consensus 472 ~---~~--~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~--------~~~L~~L~l~~~~ 537 (676)
. .. ..+++|+.|++++|.. ..+|..+ ..+++|+.|++++|. +..+|..... +++|+.|++++|.
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred cchhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCC
Confidence 2 11 1345788888888664 3566544 467888888888764 4455543322 2388888888887
Q ss_pred hhhhhhhhcccccc--ccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecC------CCCcccchhhcCCC
Q 005813 538 EIWKSMIERGRGFH--RFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISN------FPNLERLSSSIVDL 609 (676)
Q Consensus 538 ~~~~~~~~~~~~l~--~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~------c~~l~~l~~~~~~~ 609 (676)
....+. .+. .+++|+.|++++| .+..+|.....+ ++|+.|++++ +.-...+|..+..+
T Consensus 740 L~~lp~-----~l~~~~l~~L~~L~Ls~N--~L~~lp~~l~~L-------~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 740 LTSLSD-----DFRATTLPYLSNMDVSYN--CFSSFPTQPLNS-------SQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CCCCCG-----GGSTTTCTTCCEEECCSS--CCSSCCCGGGGC-------TTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CccchH-----HhhhccCCCcCEEEeCCC--CCCccchhhhcC-------CCCCEEECCCCCCcccccccccChHHHhcC
Confidence 663322 344 7888888888887 677676554333 7888888866 22245667778888
Q ss_pred CCccEEEeCCCCCccccCCCCCccccceeeecCChh
Q 005813 610 QNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCPL 645 (676)
Q Consensus 610 ~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~~ 645 (676)
++|++|++++| .+..+|.. +.++|+.|+|++|+.
T Consensus 806 ~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 806 PSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp SSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred CCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 88888888887 45778774 457888888888874
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.5e-26 Score=245.59 Aligned_cols=360 Identities=22% Similarity=0.191 Sum_probs=195.9
Q ss_pred cCCccEEEEeCCCCCCCCC-CcCCCCccceEeeecccCce-EeCCccCCCCCCCCCCCcceEEecccccccccccccCCC
Q 005813 30 FSNLATLNFEDCSVCTTLP-SVGQLHSLKHLAVRGMSRVK-SLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRTGQ 107 (676)
Q Consensus 30 ~~~L~~L~l~~c~~l~~l~-~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 107 (676)
...|++|.++++ .++.+| .++++++|++|++++|. +. .+|..+ ..+++|+.+++.+|
T Consensus 10 ~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~------~~l~~L~~l~l~~c------------- 68 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSE-WERNAPPGN------GEQREMAVSRLRDC------------- 68 (454)
T ss_dssp -------------------------CCHHHHHHHHHH-HHHTSCTTS------CCCHHHHHHHHHHH-------------
T ss_pred cccchhhhcccC-chhhCChhHhcccchhhhhccCCc-ccccCCccc------ccchhcchhhhhhh-------------
Confidence 466667776653 556777 47777777777777764 33 344332 22444544444443
Q ss_pred CcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEEEcCCCCeeEEeeccccCCCcceeec
Q 005813 108 GVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCR 187 (676)
Q Consensus 108 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 187 (676)
...++++|++++|. +. .+|...++|+.|+++++.... .....++|++|+++++......
T Consensus 69 ---~~~~l~~L~l~~~~-l~-~lp~~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~--------------- 127 (454)
T 1jl5_A 69 ---LDRQAHELELNNLG-LS-SLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALS--------------- 127 (454)
T ss_dssp ---HHHTCSEEECTTSC-CS-CCCSCCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCC---------------
T ss_pred ---hccCCCEEEecCCc-cc-cCCCCcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCccc---------------
Confidence 12455666666653 44 345545566666666654332 2223467777777776433211
Q ss_pred CCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcc
Q 005813 188 DTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRL 267 (676)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L 267 (676)
...++|+.|+++++.... ++ .+..+++|++|+++++ .++.++.. +.+|
T Consensus 128 -------------~~~~~L~~L~L~~n~l~~----lp--~~~~l~~L~~L~l~~N-~l~~lp~~------------~~~L 175 (454)
T 1jl5_A 128 -------------DLPPLLEYLGVSNNQLEK----LP--ELQNSSFLKIIDVDNN-SLKKLPDL------------PPSL 175 (454)
T ss_dssp -------------SCCTTCCEEECCSSCCSS----CC--CCTTCTTCCEEECCSS-CCSCCCCC------------CTTC
T ss_pred -------------CCCCCCCEEECcCCCCCC----Cc--ccCCCCCCCEEECCCC-cCcccCCC------------cccc
Confidence 012578888888875443 34 2678889999999985 56665543 2689
Q ss_pred eEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecc
Q 005813 268 EYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYG 347 (676)
Q Consensus 268 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 347 (676)
++|++++|. +..+| .+..+++|++|++++|. +..+|.. .++|++|++++|. ++.+|. + ..+++|+.|++++
T Consensus 176 ~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~--~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 176 EFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDL--PLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYADN 246 (454)
T ss_dssp CEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCC--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCS
T ss_pred cEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCC--cCcccEEECcCCc-CCcccc-c--CCCCCCCEEECCC
Confidence 999999874 55577 58899999999999874 5556543 4689999999987 777774 3 7888999999988
Q ss_pred cccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCC
Q 005813 348 CRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGN 427 (676)
Q Consensus 348 c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 427 (676)
+.++.++. .+++|+.|+++++. ++.++ .
T Consensus 247 -N~l~~l~~--~~~~L~~L~l~~N~-l~~l~--~---------------------------------------------- 274 (454)
T 1jl5_A 247 -NLLKTLPD--LPPSLEALNVRDNY-LTDLP--E---------------------------------------------- 274 (454)
T ss_dssp -SCCSSCCS--CCTTCCEEECCSSC-CSCCC--C----------------------------------------------
T ss_pred -CcCCcccc--cccccCEEECCCCc-ccccC--c----------------------------------------------
Confidence 45555543 23556666666542 33332 0
Q ss_pred CCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccce
Q 005813 428 LPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQL 507 (676)
Q Consensus 428 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 507 (676)
.+++|+.|++++|.. ..++. ..++|++|++++| .+..++.. .++|+.|++++|. +..+|. .+++|++|
T Consensus 275 ~~~~L~~L~ls~N~l-~~l~~---~~~~L~~L~l~~N-~l~~i~~~---~~~L~~L~Ls~N~-l~~lp~---~~~~L~~L 342 (454)
T 1jl5_A 275 LPQSLTFLDVSENIF-SGLSE---LPPNLYYLNASSN-EIRSLCDL---PPSLEELNVSNNK-LIELPA---LPPRLERL 342 (454)
T ss_dssp CCTTCCEEECCSSCC-SEESC---CCTTCCEEECCSS-CCSEECCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEE
T ss_pred ccCcCCEEECcCCcc-CcccC---cCCcCCEEECcCC-cCCcccCC---cCcCCEEECCCCc-cccccc---cCCcCCEE
Confidence 013445555544432 11111 1245566666555 33333321 1356666666644 333443 24566666
Q ss_pred eeeccCCCCCCCcCCCCCCccceeeccCcchhh
Q 005813 508 TIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIW 540 (676)
Q Consensus 508 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 540 (676)
++++|. +..+|. .+++|++|++++|....
T Consensus 343 ~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 343 IASFNH-LAEVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ECCSSC-CSCCCC---CCTTCCEEECCSSCCSS
T ss_pred ECCCCc-cccccc---hhhhccEEECCCCCCCc
Confidence 666653 344542 45666666666665543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=5.5e-24 Score=235.17 Aligned_cols=433 Identities=13% Similarity=0.046 Sum_probs=233.5
Q ss_pred CCCCceEEEeccCCCCCC-cccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCC
Q 005813 5 HENLEQFCISGYEGKQFP-TWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPI 81 (676)
Q Consensus 5 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 81 (676)
+++|++|+++++.+..++ ..+. .+++|++|+++++ .++.++ .|+++++|++|++++|. ++++|..
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-------- 118 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC-------- 118 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--------
T ss_pred CCCcCEEECCCCCccccChhhhc--cCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--------
Confidence 478999999999998886 4666 7999999999996 888885 59999999999999995 9999854
Q ss_pred CCCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCCCCCCc--cEEEEcCCcC--hhhcccCCCc
Q 005813 82 PFPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPEHLPAL--EMLAIEGCEE--LLVSVASLPA 157 (676)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L--~~L~i~~~~~--~~~~~~~~~~ 157 (676)
.+++|+.|+++++. +..... ...+..+++|++|+++++. +.......+++| +.|+++++.. .......+..
T Consensus 119 ~l~~L~~L~Ls~N~-l~~l~~---p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 119 PMASLRHLDLSFND-FDVLPV---CKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp CCTTCSEEECCSSC-CSBCCC---CGGGGGCTTCCEEEEECSB-CCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred ccccCCEEECCCCC-ccccCc---hHhhcccCcccEEecCCCc-cccCchhhhhhceeeEEEeecccccccccCcccccc
Confidence 39999999999875 333221 1233378999999999864 332222345566 9999999865 3322223332
Q ss_pred ee----EEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCC
Q 005813 158 LC----KFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICS 233 (676)
Q Consensus 158 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 233 (676)
+. .+++.++....... ......+++|+.|+++++.............+...++
T Consensus 194 l~~~~l~l~l~~n~~~~~~~-----------------------~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQV-----------------------NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCC-----------------------EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred cCcceEEEEecCccchhhhh-----------------------hhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 22 33444443221110 1112345677777777764211100112233566677
Q ss_pred ccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccc-----cCCCCCceEeecCCCCCCCCCCc
Q 005813 234 LKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSS-----LSLSSLREIEICSCHSLVSFPEV 308 (676)
Q Consensus 234 L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~-----~~l~~L~~L~l~~~~~l~~~~~~ 308 (676)
|+.|++.++. +..-... .+... ...++|++|++++|.....+|..+ ..++.|+.+++..+.. .+|..
T Consensus 251 L~~L~L~~~~-l~~~~~~----~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~ 322 (562)
T 3a79_B 251 LLNVTLQHIE-TTWKCSV----KLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKE 322 (562)
T ss_dssp CEEEEEEEEE-ECHHHHH----HHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHH
T ss_pred ceEEEecCCc-CcHHHHH----HHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChh
Confidence 7777777642 2211110 01111 112477777777765444555544 4444444444443321 22210
Q ss_pred c-----CCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCCCCcEEEEeccCCcccccccccc
Q 005813 309 A-----LPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGI 383 (676)
Q Consensus 309 ~-----~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 383 (676)
. ...+|++|+++++. +...+.. ..+++|+.|+++++ .++.. .+ .
T Consensus 323 ~~~~~~~~~~L~~L~l~~n~-~~~~~~~---~~l~~L~~L~l~~n-~l~~~----------------------~~--~-- 371 (562)
T 3a79_B 323 ALYSVFAEMNIKMLSISDTP-FIHMVCP---PSPSSFTFLNFTQN-VFTDS----------------------VF--Q-- 371 (562)
T ss_dssp HHHHHHHTCCCSEEEEESSC-CCCCCCC---SSCCCCCEEECCSS-CCCTT----------------------TT--T--
T ss_pred hhhhhhccCcceEEEccCCC-cccccCc---cCCCCceEEECCCC-ccccc----------------------hh--h--
Confidence 0 01335555555444 2211110 23333444443332 11110 00 0
Q ss_pred ccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChh--hHHHhhccCCccceeec
Q 005813 384 QCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLE--SIAERLDNNTSLETISI 461 (676)
Q Consensus 384 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l 461 (676)
.+.. .++|+.|++++|.... .++..+..+++|++|++
T Consensus 372 -----~~~~------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 372 -----GCST------------------------------------LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp -----TCCS------------------------------------CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred -----hhcc------------------------------------cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 0000 1445555555543322 34455666777777777
Q ss_pred cCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhh
Q 005813 462 DSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIW 540 (676)
Q Consensus 462 ~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 540 (676)
++|.....+|. .+..+++|+.|++++|.....+|..+. ++|++|++++| .+..+|.....+++|++|++++|....
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCCC
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCCC
Confidence 77633322544 345566777777777654443333222 46666666665 344555444455555555555555443
Q ss_pred hhhhhccccccccccccEEEEecC
Q 005813 541 KSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 541 ~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
.+. ..+..+++|+.|++++|
T Consensus 488 l~~----~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 488 VPD----GVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCT----TSTTTCTTCCCEECCSC
T ss_pred CCH----HHHhcCCCCCEEEecCC
Confidence 222 12445555555555554
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1e-23 Score=227.27 Aligned_cols=349 Identities=15% Similarity=0.182 Sum_probs=257.7
Q ss_pred CCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccc
Q 005813 202 RIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKL 281 (676)
Q Consensus 202 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l 281 (676)
.+++++.|.+.++.... ++ .+..+++|++|++++| .++.+++ +..+ ++|++|++++|. +..+
T Consensus 44 ~l~~l~~L~l~~~~i~~----l~--~~~~l~~L~~L~Ls~n-~l~~~~~------~~~l----~~L~~L~l~~n~-l~~~ 105 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS----ID--GVEYLNNLTQINFSNN-QLTDITP------LKNL----TKLVDILMNNNQ-IADI 105 (466)
T ss_dssp HHHTCCEEECCSSCCCC----CT--TGGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSSC-CCCC
T ss_pred HhccccEEecCCCCCcc----Cc--chhhhcCCCEEECCCC-ccCCchh------hhcc----ccCCEEECCCCc-cccC
Confidence 36789999998876533 22 2678999999999996 5666643 2333 899999999875 4455
Q ss_pred cccccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCC
Q 005813 282 PQSSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPS 361 (676)
Q Consensus 282 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 361 (676)
+. +..+++|++|++++| .+..++....+++|++|++++|. +..++.. ..+++|+.|++.+ .+..++.....+
T Consensus 106 ~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~l~~--~~~~~~~~~~l~ 177 (466)
T 1o6v_A 106 TP-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISAL---SGLTSLQQLSFGN--QVTDLKPLANLT 177 (466)
T ss_dssp GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGGG---TTCTTCSEEEEEE--SCCCCGGGTTCT
T ss_pred hh-hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChhh---ccCCcccEeecCC--cccCchhhccCC
Confidence 54 889999999999987 46777777779999999999997 7777652 7899999999864 445555555557
Q ss_pred CCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCC
Q 005813 362 SLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCS 441 (676)
Q Consensus 362 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 441 (676)
+|+.|+++++. +..++ ....+++|++|+++++.- ....+... .++|+.|++++|.
T Consensus 178 ~L~~L~l~~n~-l~~~~----------~l~~l~~L~~L~l~~n~l-~~~~~~~~-------------l~~L~~L~l~~n~ 232 (466)
T 1o6v_A 178 TLERLDISSNK-VSDIS----------VLAKLTNLESLIATNNQI-SDITPLGI-------------LTNLDELSLNGNQ 232 (466)
T ss_dssp TCCEEECCSSC-CCCCG----------GGGGCTTCSEEECCSSCC-CCCGGGGG-------------CTTCCEEECCSSC
T ss_pred CCCEEECcCCc-CCCCh----------hhccCCCCCEEEecCCcc-cccccccc-------------cCCCCEEECCCCC
Confidence 79999998864 44443 123456899999988752 22122111 3789999999876
Q ss_pred ChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcC
Q 005813 442 KLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEE 521 (676)
Q Consensus 442 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 521 (676)
.. .+ ..+..+++|++|++++| .+..++. +..+++|+.|++++|.. ..++. +..+++|+.|++++|. +..++ .
T Consensus 233 l~-~~-~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~ 304 (466)
T 1o6v_A 233 LK-DI-GTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQ-LEDIS-P 304 (466)
T ss_dssp CC-CC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSSC-CSCCG-G
T ss_pred cc-cc-hhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCCcc-Ccccc-ccCCCccCeEEcCCCc-ccCch-h
Confidence 43 33 35778899999999998 4555444 66788999999999764 44443 7788999999999875 44444 3
Q ss_pred CCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCccc
Q 005813 522 DDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLER 601 (676)
Q Consensus 522 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~ 601 (676)
+..+++|++|++++|......+ +..+++|+.|++++| .+..++. +..+++|+.|++++ +.+..
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n--~l~~~~~--------l~~l~~L~~L~l~~-n~l~~ 367 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNN--KVSDVSS--------LANLTNINWLSAGH-NQISD 367 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSS--CCCCCGG--------GTTCTTCCEEECCS-SCCCB
T ss_pred hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCC--ccCCchh--------hccCCCCCEEeCCC-CccCc
Confidence 7788999999999998766533 678899999999997 7776642 22558999999998 46766
Q ss_pred chhhcCCCCCccEEEeCCCCCccccCC
Q 005813 602 LSSSIVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 602 l~~~~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
++. +..+++|++|++++| .++.+|.
T Consensus 368 ~~~-~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 368 LTP-LANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp CGG-GTTCTTCCEEECCCE-EEECCCB
T ss_pred cch-hhcCCCCCEEeccCC-cccCCch
Confidence 664 889999999999998 5666655
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.2e-23 Score=224.65 Aligned_cols=345 Identities=18% Similarity=0.175 Sum_probs=259.5
Q ss_pred ccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCc
Q 005813 229 QDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEV 308 (676)
Q Consensus 229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~ 308 (676)
..+++++.|++.++ .++.++. +.. +++|++|++++|. +..++. +..+++|++|++++|. +..+++.
T Consensus 43 ~~l~~l~~L~l~~~-~i~~l~~------~~~----l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~ 108 (466)
T 1o6v_A 43 TDLDQVTTLQADRL-GIKSIDG------VEY----LNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQ-IADITPL 108 (466)
T ss_dssp HHHHTCCEEECCSS-CCCCCTT------GGG----CTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred hHhccccEEecCCC-CCccCcc------hhh----hcCCCEEECCCCc-cCCchh-hhccccCCEEECCCCc-cccChhh
Confidence 35678999999986 4665543 233 3999999999975 556665 8899999999999874 5666667
Q ss_pred cCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCCCCcEEEEeccCCccccccccccccccC
Q 005813 309 ALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSG 388 (676)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 388 (676)
..+++|++|++++|. ++.++. + ..+++|+.|++++| .++.++.....++|+.|++.. .+..++
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~--~~~~~~---------- 171 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDP-L--KNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGN--QVTDLK---------- 171 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEE--SCCCCG----------
T ss_pred cCCCCCCEEECCCCC-CCCChH-H--cCCCCCCEEECCCC-ccCCChhhccCCcccEeecCC--cccCch----------
Confidence 779999999999987 777765 3 78999999999985 566666655667799999864 233322
Q ss_pred CccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcc
Q 005813 389 RRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLV 468 (676)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 468 (676)
....+++|++|+++++. +..+- .+.. .++|++|++++|......+ +..+++|++|++++| .++
T Consensus 172 ~~~~l~~L~~L~l~~n~-l~~~~-------~l~~------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~ 234 (466)
T 1o6v_A 172 PLANLTTLERLDISSNK-VSDIS-------VLAK------LTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLK 234 (466)
T ss_dssp GGTTCTTCCEEECCSSC-CCCCG-------GGGG------CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCC
T ss_pred hhccCCCCCEEECcCCc-CCCCh-------hhcc------CCCCCEEEecCCccccccc--ccccCCCCEEECCCC-Ccc
Confidence 13346689999999875 22211 1111 3789999999986554433 677999999999998 555
Q ss_pred ccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccc
Q 005813 469 SFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGR 548 (676)
Q Consensus 469 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 548 (676)
.++ .+..+++|+.|++++|... .++. +..+++|++|++++|. +..++ .+..+++|++|++++|......+
T Consensus 235 ~~~-~l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~----- 304 (466)
T 1o6v_A 235 DIG-TLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQ-ISNIS-PLAGLTALTNLELNENQLEDISP----- 304 (466)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCSCCGG-----
T ss_pred cch-hhhcCCCCCEEECCCCccc-cchh-hhcCCCCCEEECCCCc-cCccc-cccCCCccCeEEcCCCcccCchh-----
Confidence 554 4667899999999998644 3433 7889999999999975 44455 37889999999999998766433
Q ss_pred cccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCC
Q 005813 549 GFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 549 ~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
+..+++|+.|++++| .+..++.. ..+++|+.|++++ +.++.++ .+..+++|++|++++| .++.++.
T Consensus 305 -~~~l~~L~~L~L~~n--~l~~~~~~--------~~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~ 370 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFN--NISDISPV--------SSLTKLQRLFFYN-NKVSDVS-SLANLTNINWLSAGHN-QISDLTP 370 (466)
T ss_dssp -GGGCTTCSEEECCSS--CCSCCGGG--------GGCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSS-CCCBCGG
T ss_pred -hcCCCCCCEEECcCC--cCCCchhh--------ccCccCCEeECCC-CccCCch-hhccCCCCCEEeCCCC-ccCccch
Confidence 678999999999998 67665542 1458999999999 5787775 7889999999999998 4666554
Q ss_pred CCCccccceeeecCChh
Q 005813 629 KGLPSSLLRLYIVGCPL 645 (676)
Q Consensus 629 ~~l~~~L~~L~i~~c~~ 645 (676)
..-.++|+.|++++|+.
T Consensus 371 ~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GTTCTTCCEEECCCEEE
T ss_pred hhcCCCCCEEeccCCcc
Confidence 33468999999999863
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.4e-23 Score=214.42 Aligned_cols=189 Identities=17% Similarity=0.135 Sum_probs=120.6
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++|++|++++|...... . +..+++|++|++++| .+..++. +..+++|+.|++++|.. ..++. +..+++|++|++
T Consensus 155 ~~L~~L~l~~~~~~~~~-~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~L~~L~l 228 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVT-P-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQI-TDITP-VANMTRLNSLKI 228 (347)
T ss_dssp TTCCEEECCSSCCCCCG-G-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEEC
T ss_pred CCCcEEEecCCCcCCch-h-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCCC-CCCch-hhcCCcCCEEEc
Confidence 34445555444322211 1 455677777777766 3444443 55566777777777543 33322 566777777777
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCcc
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLT 589 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~ 589 (676)
++|. +..++ .+..+++|++|++++|...... .+..+++|+.|++++| .+..++.- ..+++|+
T Consensus 229 ~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n--~l~~~~~~--------~~l~~L~ 290 (347)
T 4fmz_A 229 GNNK-ITDLS-PLANLSQLTWLEIGTNQISDIN------AVKDLTKLKMLNVGSN--QISDISVL--------NNLSQLN 290 (347)
T ss_dssp CSSC-CCCCG-GGTTCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSS--CCCCCGGG--------GGCTTCS
T ss_pred cCCc-cCCCc-chhcCCCCCEEECCCCccCCCh------hHhcCCCcCEEEccCC--ccCCChhh--------cCCCCCC
Confidence 7764 33444 2667777888888777665531 3677888888888887 66666431 2447888
Q ss_pred EEeecCCCCccc-chhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCCh
Q 005813 590 SLGISNFPNLER-LSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCP 644 (676)
Q Consensus 590 ~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~ 644 (676)
.|++++| .+.. .+..+..+++|++|++++|+ ++.++...-.++|++|++++|+
T Consensus 291 ~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 291 SLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred EEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 8888884 5554 44577888899999999884 6666553336788888888886
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.5e-23 Score=235.84 Aligned_cols=504 Identities=15% Similarity=0.118 Sum_probs=290.6
Q ss_pred CCCCceEEEeccCCCCCC-cccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCC
Q 005813 5 HENLEQFCISGYEGKQFP-TWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPI 81 (676)
Q Consensus 5 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 81 (676)
|+.+++|++++|.+..+| .+|. .+++|++|+|++| .++.+| +|+++++|++|+|++|+ ++++|.+.++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~----- 121 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS----- 121 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGT-----
T ss_pred CcCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhc-----
Confidence 568999999999998886 4666 7999999999996 888888 59999999999999995 9999977654
Q ss_pred CCCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccC---CCCCCccEEEEcCCcChhhc---ccCC
Q 005813 82 PFPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFP---EHLPALEMLAIEGCEELLVS---VASL 155 (676)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~L~~L~i~~~~~~~~~---~~~~ 155 (676)
.+++|++|+++++. +....... +..+++|++|+++++..-....| ..+++|++|+++++...... +..+
T Consensus 122 ~L~~L~~L~Ls~N~-l~~l~~~~----~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 122 GLSSLQKLVAVETN-LASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CCCCCCEEECCCCc-CCCCChhh----hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 49999999999873 33332222 23789999999998743221233 34789999999988644322 2211
Q ss_pred C----ceeEEEEcCCCCeeEEeeccccCCCcceeecCCC-CceeccCCCCCCCCCcceEeec--CCCCchhhhhccchhh
Q 005813 156 P----ALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTS-NQVFFTEPLKPRIPKLEELGIN--NMKNETHIWKSHNELL 228 (676)
Q Consensus 156 ~----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~ 228 (676)
. ....++++.+............. ....+....+ ............+..++...+. ...............+
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~-~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhcccCcccccCcccccch-hhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 1 23356666665443322211111 1111111000 0001111122233444433332 2111111000223334
Q ss_pred ccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCc
Q 005813 229 QDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEV 308 (676)
Q Consensus 229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~ 308 (676)
.....+....+.....-...... ...+. ...+++.+.+.++.. ..++ .+....+|+.|++.+|. +..++.
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~--~~~~~----~~~~l~~l~~~~~~~-~~~~-~~~~~~~L~~L~l~~~~-~~~~~~- 345 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGI--IDLFN----CLTNVSSFSLVSVTI-ERVK-DFSYNFGWQHLELVNCK-FGQFPT- 345 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEEC--TTTTG----GGTTCSEEEEESCEE-EECG-GGGSCCCCSEEEEESCE-ESSCCC-
T ss_pred ccccchhhhhhhhhhhcccccch--hhhhh----hhccccccccccccc-cccc-ccccchhhhhhhccccc-ccCcCc-
Confidence 44555555555442111111000 00112 227788888777542 2222 34566788888888764 333332
Q ss_pred cCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccc----cCCCCCcEEEEeccCCccccccccccc
Q 005813 309 ALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAV----QVPSSLKLLTIWHCDNIRTLTVEEGIQ 384 (676)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~~ 384 (676)
..+..|+.+.+.++. ....+.. ..+++|+.++++.. .+...... ....+++.+++..+.. ..++
T Consensus 346 ~~l~~L~~l~l~~n~-~~~~~~~---~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~------ 413 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNK-GGNAFSE---VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMS------ 413 (635)
T ss_dssp CBCTTCCEEEEESCC-SCCBCCC---CBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCEEECCSCSE-EEEC------
T ss_pred ccchhhhhccccccc-CCCCccc---ccccccccchhhcc-ccccccccccchhhhhhhhhhhcccccc-cccc------
Confidence 236778888888776 3333322 46788888888773 33322111 1234577777665421 1111
Q ss_pred cccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhH-HHhhccCCccceeeccC
Q 005813 385 CSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESI-AERLDNNTSLETISIDS 463 (676)
Q Consensus 385 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~ 463 (676)
..+..+ ++++.+++..+...... ...+..+++++.+++++
T Consensus 414 ---~~~~~l------------------------------------~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 414 ---SNFLGL------------------------------------EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp ---SCCTTC------------------------------------TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred ---cccccc------------------------------------ccccchhhhhccccccccccccccccccccccccc
Confidence 011122 34444444443322221 12345567777777777
Q ss_pred CCCccccCCCCCCCCCccEEEeecCcCccc-ccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhh
Q 005813 464 CKNLVSFPEGGLPCAKLRTLAISNCKRLEA-LPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKS 542 (676)
Q Consensus 464 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 542 (676)
|......+..+..+++|+.|++++|..... .|..+..+++|+.|++++|......+..+..+++|++|++++|......
T Consensus 455 n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~ 534 (635)
T 4g8a_A 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534 (635)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred cccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence 744444455566677777888777764443 3556677778888888877544444556777788888888888766554
Q ss_pred hhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecC
Q 005813 543 MIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISN 595 (676)
Q Consensus 543 ~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~ 595 (676)
+ ..+.++++|+.|++++| .+..++... + ...+++|+.|++++
T Consensus 535 ~----~~~~~l~~L~~L~Ls~N--~l~~~~~~~--l---~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 535 T----FPYKCLNSLQVLDYSLN--HIMTSKKQE--L---QHFPSSLAFLNLTQ 576 (635)
T ss_dssp C----GGGTTCTTCCEEECTTS--CCCBCCSSC--T---TCCCTTCCEEECTT
T ss_pred h----hHHhCCCCCCEEECCCC--cCCCCCHHH--H---HhhhCcCCEEEeeC
Confidence 4 34778888888888887 777766533 1 12346788888887
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=8.5e-24 Score=227.63 Aligned_cols=353 Identities=16% Similarity=0.152 Sum_probs=211.8
Q ss_pred CCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccc
Q 005813 204 PKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQ 283 (676)
Q Consensus 204 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~ 283 (676)
++|+.|+++++.... .++..+..+++|++|+++++.....+++. .+..+ ++|++|++++|......|.
T Consensus 30 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNN----TFRGL----SSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp TTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTT----TTTTC----TTCCEEECTTCTTCEECTT
T ss_pred CccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcc----ccccc----ccCCEEeCCCCccCccChh
Confidence 689999999987644 45566788999999999997543344333 13333 8999999999875555678
Q ss_pred cccCCCCCceEeecCCCCCCCCCC---ccCCCCccEEeeccccCcCcC-chhhccCCCCCccEEeecccccccccccccC
Q 005813 284 SSLSLSSLREIEICSCHSLVSFPE---VALPSKLRKIEIRYCDALKSL-PEAWMCDTNSSLEILHIYGCRSLTYIAAVQV 359 (676)
Q Consensus 284 ~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 359 (676)
.+..+++|++|++++|......+. ...+++|++|++++|. +..+ +..++ ..+++|++|+++++ .++.+....+
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~l 174 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFF-LNMRRFHVLDLTFN-KVKSICEEDL 174 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGG-GGCTTCCEEECTTC-CBSCCCTTTS
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCccccc-CCCCcccEEeCCCC-cccccChhhh
Confidence 889999999999999753322222 4458899999999988 5555 44322 67899999999884 4444332211
Q ss_pred C----CCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceE
Q 005813 360 P----SSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSI 435 (676)
Q Consensus 360 ~----~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 435 (676)
. .+++.+++.++. +..++ ...+. ........-.++|+.|
T Consensus 175 ~~l~~~~L~~L~l~~n~-l~~~~----------------------------------~~~~~--~~~~~~~~~~~~L~~L 217 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSIT-LQDMN----------------------------------EYWLG--WEKCGNPFKNTSITTL 217 (455)
T ss_dssp GGGTTCEEEEEECTTCB-CTTCS----------------------------------TTCTT--HHHHCCTTTTCEEEEE
T ss_pred hccccccccccccccCc-ccccc----------------------------------hhhcc--ccccccccccceeeeE
Confidence 1 223344433321 11111 00000 0000000002578888
Q ss_pred EEcCCCChhhHHHhhcc---CCccceeeccCCCCccccCC----------CC--CCCCCccEEEeecCcCcccccccccC
Q 005813 436 RVGGCSKLESIAERLDN---NTSLETISIDSCKNLVSFPE----------GG--LPCAKLRTLAISNCKRLEALPKGLHN 500 (676)
Q Consensus 436 ~l~~~~~l~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~----------~~--~~~~~L~~L~l~~~~~~~~~~~~~~~ 500 (676)
++++|......+..+.. .++|+.|++++|........ .+ ...++|+.|++++|......+..+..
T Consensus 218 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred ecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 88888766666655543 37888998888743322110 01 11356777777776655555556666
Q ss_pred CCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccC
Q 005813 501 LTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGT 580 (676)
Q Consensus 501 l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~ 580 (676)
+++|++|++++|......+..+..+++|++|++++|......+ ..+.++++|+.|++++| .+..+....
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~~~~----- 366 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS----RMFENLDKLEVLDLSYN--HIRALGDQS----- 366 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG----GGGTTCTTCCEEECCSS--CCCEECTTT-----
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh----hHhcCcccCCEEECCCC--cccccChhh-----
Confidence 7777777777665444334455666677777777666544433 23566666777777766 555443211
Q ss_pred CCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCC
Q 005813 581 TLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCP 621 (676)
Q Consensus 581 ~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 621 (676)
+..+++|+.|++++ +.++.+|. .+..+++|++|++++|+
T Consensus 367 -~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 367 -FLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 22346666666666 55666554 34566666666666664
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.3e-23 Score=223.07 Aligned_cols=339 Identities=13% Similarity=0.118 Sum_probs=188.6
Q ss_pred CCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcc
Q 005813 200 KPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLV 279 (676)
Q Consensus 200 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~ 279 (676)
...+++|+.|+++++..... ++...+..+++|++|+++++ .++.+.+. .+..+ ++|++|++++|....
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~l~~ 117 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYN-QFLQLETG----AFNGL----ANLEVLTLTQCNLDG 117 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTC-TTCEECTT----TTTTC----TTCCEEECTTSCCBT
T ss_pred hccCccccEEECcCCcccce---ECcccccccccCCEEeCCCC-ccCccChh----hccCc----ccCCEEeCCCCCCCc
Confidence 45688999999999876543 56677888999999999996 45555433 23444 899999999986544
Q ss_pred ccccc--ccCCCCCceEeecCCCCCCCC-CC--ccCCCCccEEeeccccCcCcCch-hhccCCCCCccEEeecccccccc
Q 005813 280 KLPQS--SLSLSSLREIEICSCHSLVSF-PE--VALPSKLRKIEIRYCDALKSLPE-AWMCDTNSSLEILHIYGCRSLTY 353 (676)
Q Consensus 280 ~l~~~--~~~l~~L~~L~l~~~~~l~~~-~~--~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~ 353 (676)
..+.. +..+++|++|++++|. +..+ +. ...+++|++|++++|. +...+. .+......+|+.++++++ .+..
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n-~l~~ 194 (455)
T 3v47_A 118 AVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSI-TLQD 194 (455)
T ss_dssp HHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTC-BCTT
T ss_pred cccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccC-cccc
Confidence 44443 8889999999999976 4444 43 4458999999999988 544433 331123378889998874 4554
Q ss_pred cccccC----------CCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhcc
Q 005813 354 IAAVQV----------PSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESL 423 (676)
Q Consensus 354 ~~~~~~----------~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 423 (676)
++.... .++|+.|+++++.--...+ .... ......+|+.|++.++......+....++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-- 266 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA--KRFF----DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN-- 266 (455)
T ss_dssp CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH--HHHH----HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT--
T ss_pred cchhhccccccccccccceeeeEecCCCcccccch--hhhh----ccccccceeeEeeccccccccccchhhhccCcc--
Confidence 443221 1457777777754322222 0000 001123577777766543332111111100000
Q ss_pred ccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCC
Q 005813 424 EVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTS 503 (676)
Q Consensus 424 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 503 (676)
..+. -...++|++|++++|......+..+..+++|+.|++++|......+..+..+++
T Consensus 267 --------------------~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 267 --------------------FTFK--GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp --------------------TTTG--GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred --------------------cccc--cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 0000 001345555555555333333444455555555555555433333444555555
Q ss_pred ccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCC
Q 005813 504 LQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLP 583 (676)
Q Consensus 504 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~ 583 (676)
|++|++++|......+..+..+++|++|++++|......+ ..+.++++|+.|++++| .+..++... +.
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~------~~ 392 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD----QSFLGLPNLKELALDTN--QLKSVPDGI------FD 392 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS--CCSCCCTTT------TT
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh----hhccccccccEEECCCC--ccccCCHhH------hc
Confidence 5555555553322223344555566666666665544333 23556666666666665 555555422 22
Q ss_pred CCCCccEEeecC
Q 005813 584 LPASLTSLGISN 595 (676)
Q Consensus 584 ~~~~L~~L~l~~ 595 (676)
.+++|+.|++++
T Consensus 393 ~l~~L~~L~l~~ 404 (455)
T 3v47_A 393 RLTSLQKIWLHT 404 (455)
T ss_dssp TCTTCCEEECCS
T ss_pred cCCcccEEEccC
Confidence 335666666666
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.8e-22 Score=208.91 Aligned_cols=304 Identities=18% Similarity=0.224 Sum_probs=186.4
Q ss_pred ccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCc
Q 005813 229 QDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEV 308 (676)
Q Consensus 229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~ 308 (676)
..+++|++|++.++ .++.++. +.. +++|++|++++|. ++.++. +..+++|++|++++| .+..++..
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~------~~~----~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG------IEY----LTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT------GGG----CTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchh------hhh----cCCccEEEccCCc-cccchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 45566666666664 3444332 222 2666666666653 444443 666667777777665 35555555
Q ss_pred cCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCCCCcEEEEeccCCccccccccccccccC
Q 005813 309 ALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSG 388 (676)
Q Consensus 309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 388 (676)
..+++|++|++++|. +..++. + ..+++|+.|++++|..+..++.....++|+.|++.++. +..++.
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~--~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--------- 172 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-L--ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--------- 172 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-G--TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG---------
T ss_pred cCCCcCCEEECcCCc-ccCchh-h--ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh---------
Confidence 556667777776666 555544 2 56666666666666555544443333445555544432 111110
Q ss_pred CccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcc
Q 005813 389 RRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLV 468 (676)
Q Consensus 389 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 468 (676)
... .++|+.|++++|... .++. +..+++|+.|++++| .+.
T Consensus 173 -~~~------------------------------------l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n-~l~ 212 (347)
T 4fmz_A 173 -IAN------------------------------------LTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVN-QIT 212 (347)
T ss_dssp -GGG------------------------------------CTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSS-CCC
T ss_pred -hcc------------------------------------CCCCCEEEccCCccc-cccc-ccCCCccceeecccC-CCC
Confidence 001 256666666665432 2322 566778888888777 444
Q ss_pred ccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccc
Q 005813 469 SFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGR 548 (676)
Q Consensus 469 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 548 (676)
.++. +..+++|+.|++++|. +..++. +..+++|++|++++|. +..++ .+..+++|++|++++|......
T Consensus 213 ~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~~~~------ 281 (347)
T 4fmz_A 213 DITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQISDIS------ 281 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCCCG------
T ss_pred CCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCc-cCCCh-hHhcCCCcCEEEccCCccCCCh------
Confidence 4433 5567788888888765 334443 6778888888888864 44444 5677888888888888765542
Q ss_pred cccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCC
Q 005813 549 GFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 549 ~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 621 (676)
.+..+++|+.|++++| .+..+.... +..+++|+.|++++ +.++.++. +..+++|++|++++|+
T Consensus 282 ~~~~l~~L~~L~L~~n--~l~~~~~~~------l~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNN--QLGNEDMEV------IGGLTNLTTLFLSQ-NHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGCTTCSEEECCSS--CCCGGGHHH------HHTCTTCSEEECCS-SSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred hhcCCCCCCEEECcCC--cCCCcChhH------hhccccCCEEEccC-CccccccC-hhhhhccceeehhhhc
Confidence 3678888888888887 665444322 12348899999998 45777764 7889999999999984
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=220.36 Aligned_cols=178 Identities=17% Similarity=0.111 Sum_probs=133.5
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.....++.......+|++|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 57778888777655545566888999999999998433333446778899999999998888877776666678999999
Q ss_pred eccCCCCCCC-cCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCc
Q 005813 510 GIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASL 588 (676)
Q Consensus 510 ~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L 588 (676)
++|. +..++ ..+..+++|++|++++|....... ..+.++++|+.|++++| .+..+.... +..+++|
T Consensus 232 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~------~~~l~~L 298 (477)
T 2id5_A 232 THCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGG--QLAVVEPYA------FRGLNYL 298 (477)
T ss_dssp ESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSS--CCSEECTTT------BTTCTTC
T ss_pred cCCc-ccccCHHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCC--ccceECHHH------hcCcccC
Confidence 9874 44454 346778889999999888765544 35788888999999887 666664322 3345888
Q ss_pred cEEeecCCCCcccchh-hcCCCCCccEEEeCCCC
Q 005813 589 TSLGISNFPNLERLSS-SIVDLQNLTELYLADCP 621 (676)
Q Consensus 589 ~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 621 (676)
+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus 299 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 299 RVLNVSG-NQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CEEECCC-CcCceeCHhHcCCCcccCEEEccCCC
Confidence 8899988 67877776 56788888999988875
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=8.4e-23 Score=218.23 Aligned_cols=400 Identities=20% Similarity=0.225 Sum_probs=199.6
Q ss_pred CCCCceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC-CcCCCCcc-------------ceEeeecccCceEe
Q 005813 5 HENLEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP-SVGQLHSL-------------KHLAVRGMSRVKSL 70 (676)
Q Consensus 5 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~l~~L-------------~~L~l~~~~~l~~i 70 (676)
.+.|++|.++++....+|+.++ .+++|++|++++|.....+| .++.+++| ++|++++|. ++++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~--~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAE--NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCC
T ss_pred cccchhhhcccCchhhCChhHh--cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccC
Confidence 4789999999999989999998 89999999999974445788 68888876 788888884 7776
Q ss_pred CCccCCCCCCCCCCCcceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhh
Q 005813 71 GSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLV 150 (676)
Q Consensus 71 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~ 150 (676)
|. ..++|+.|++++.. +... .. .+++|+.|+++++ .+. .+|...++|++|++++|.....
T Consensus 87 p~---------~~~~L~~L~l~~n~-l~~l-----p~---~~~~L~~L~l~~n-~l~-~l~~~~~~L~~L~L~~n~l~~l 146 (454)
T 1jl5_A 87 PE---------LPPHLESLVASCNS-LTEL-----PE---LPQSLKSLLVDNN-NLK-ALSDLPPLLEYLGVSNNQLEKL 146 (454)
T ss_dssp CS---------CCTTCSEEECCSSC-CSSC-----CC---CCTTCCEEECCSS-CCS-CCCSCCTTCCEEECCSSCCSSC
T ss_pred CC---------CcCCCCEEEccCCc-CCcc-----cc---ccCCCcEEECCCC-ccC-cccCCCCCCCEEECcCCCCCCC
Confidence 63 14678888887653 2221 12 3567888888775 444 3454446788888877743321
Q ss_pred -cccCCCceeEEEEcCCCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhc
Q 005813 151 -SVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQ 229 (676)
Q Consensus 151 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 229 (676)
.+..+++|++|++++|...... ....+|+.|+++++.... .+ .+.
T Consensus 147 p~~~~l~~L~~L~l~~N~l~~lp----------------------------~~~~~L~~L~L~~n~l~~----l~--~~~ 192 (454)
T 1jl5_A 147 PELQNSSFLKIIDVDNNSLKKLP----------------------------DLPPSLEFIAAGNNQLEE----LP--ELQ 192 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCSCCC----------------------------CCCTTCCEEECCSSCCSS----CC--CCT
T ss_pred cccCCCCCCCEEECCCCcCcccC----------------------------CCcccccEEECcCCcCCc----Cc--ccc
Confidence 3566777777777777533211 113477777777765433 22 256
Q ss_pred cCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCcc
Q 005813 230 DICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVA 309 (676)
Q Consensus 230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 309 (676)
.+++|++|++++| .++.++.. +++|++|++++|. +..+|. +..+++|++|++++|. +..+|.
T Consensus 193 ~l~~L~~L~l~~N-~l~~l~~~------------~~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~-- 254 (454)
T 1jl5_A 193 NLPFLTAIYADNN-SLKKLPDL------------PLSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNNL-LKTLPD-- 254 (454)
T ss_dssp TCTTCCEEECCSS-CCSSCCCC------------CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSC-CSSCCS--
T ss_pred CCCCCCEEECCCC-cCCcCCCC------------cCcccEEECcCCc-CCcccc-cCCCCCCCEEECCCCc-CCcccc--
Confidence 7777777777775 45444332 2567777777764 445663 6677777777777753 445543
Q ss_pred CCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCCCCcEEEEeccCCccccccccccccccCC
Q 005813 310 LPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGR 389 (676)
Q Consensus 310 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 389 (676)
.+++|+.|++++|. ++.++.. .++|+.|+++++ .++.++. .+++++.|+++++ .+..++
T Consensus 255 ~~~~L~~L~l~~N~-l~~l~~~-----~~~L~~L~ls~N-~l~~l~~--~~~~L~~L~l~~N-~l~~i~----------- 313 (454)
T 1jl5_A 255 LPPSLEALNVRDNY-LTDLPEL-----PQSLTFLDVSEN-IFSGLSE--LPPNLYYLNASSN-EIRSLC----------- 313 (454)
T ss_dssp CCTTCCEEECCSSC-CSCCCCC-----CTTCCEEECCSS-CCSEESC--CCTTCCEEECCSS-CCSEEC-----------
T ss_pred cccccCEEECCCCc-ccccCcc-----cCcCCEEECcCC-ccCcccC--cCCcCCEEECcCC-cCCccc-----------
Confidence 24677777777766 5555432 356666766663 3443321 2234444444432 111111
Q ss_pred ccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccc
Q 005813 390 RYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVS 469 (676)
Q Consensus 390 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~ 469 (676)
.+|++|+.|++++|.. ..+|. .+++|++|++++| .++.
T Consensus 314 -------------------------------------~~~~~L~~L~Ls~N~l-~~lp~---~~~~L~~L~L~~N-~l~~ 351 (454)
T 1jl5_A 314 -------------------------------------DLPPSLEELNVSNNKL-IELPA---LPPRLERLIASFN-HLAE 351 (454)
T ss_dssp -------------------------------------CCCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSS-CCSC
T ss_pred -------------------------------------CCcCcCCEEECCCCcc-ccccc---cCCcCCEEECCCC-cccc
Confidence 1135677777777543 33433 2578888888887 5666
Q ss_pred cCCCCCCCCCccEEEeecCcCcc--cccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhcc
Q 005813 470 FPEGGLPCAKLRTLAISNCKRLE--ALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERG 547 (676)
Q Consensus 470 ~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 547 (676)
+|. .+++|+.|++++|.... .+|..+. .|. .+.....++. .+++|++|++++|.....+.
T Consensus 352 lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L~--~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~---- 413 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYNPLREFPDIPESVE------DLR--MNSHLAEVPE---LPQNLKQLHVETNPLREFPD---- 413 (454)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EEE--CCC----------------------------------
T ss_pred ccc---hhhhccEEECCCCCCCcCCCChHHHH------hhh--hccccccccc---ccCcCCEEECCCCcCCcccc----
Confidence 665 36788888888876443 3443322 222 2233333331 35788888888887654211
Q ss_pred ccccccccccEEEEecC
Q 005813 548 RGFHRFSSLRRLTISRC 564 (676)
Q Consensus 548 ~~l~~l~~L~~L~l~~n 564 (676)
+ -.+++.|.+.+|
T Consensus 414 --i--P~sl~~L~~~~~ 426 (454)
T 1jl5_A 414 --I--PESVEDLRMNSE 426 (454)
T ss_dssp -----------------
T ss_pred --c--hhhHhheeCcCc
Confidence 0 134666677764
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.3e-22 Score=213.84 Aligned_cols=311 Identities=18% Similarity=0.160 Sum_probs=169.3
Q ss_pred CcCCccEEEEeCCCCCCCCCCcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcceEEecccccccccccccCCCC
Q 005813 29 SFSNLATLNFEDCSVCTTLPSVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRTGQG 108 (676)
Q Consensus 29 ~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 108 (676)
.+++|++|+++++ .++.+|.++.+++|++|++++|. ++.++ +..+++|+.|+++++. +... .
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~--------~~~l~~L~~L~Ls~N~-l~~~---~---- 101 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD--------LSQNTNLTYLACDSNK-LTNL---D---- 101 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC--------CTTCTTCSEEECCSSC-CSCC---C----
T ss_pred HcCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc--------cccCCCCCEEECcCCC-Ccee---e----
Confidence 4677777777774 66677777777777777777774 66654 1236667777776643 2222 1
Q ss_pred cccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEEEcCCCCeeEEeeccccCCCcceeecC
Q 005813 109 VEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRD 188 (676)
Q Consensus 109 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (676)
+..+++|++|+++++ .+.+ +| +..+++|++|++++|.....
T Consensus 102 ~~~l~~L~~L~L~~N-~l~~-l~--------------------~~~l~~L~~L~l~~N~l~~l----------------- 142 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTN-KLTK-LD--------------------VSQNPLLTYLNCARNTLTEI----------------- 142 (457)
T ss_dssp CTTCTTCCEEECCSS-CCSC-CC--------------------CTTCTTCCEEECTTSCCSCC-----------------
T ss_pred cCCCCcCCEEECCCC-cCCe-ec--------------------CCCCCcCCEEECCCCcccee-----------------
Confidence 125666666666665 2321 11 22334444444444332110
Q ss_pred CCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcce
Q 005813 189 TSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLE 268 (676)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~ 268 (676)
....+++|+.|++++|..... . .+..+++|++|+++++ .++.++ +.. +++|+
T Consensus 143 ----------~l~~l~~L~~L~l~~n~~~~~---~---~~~~l~~L~~L~ls~n-~l~~l~-------l~~----l~~L~ 194 (457)
T 3bz5_A 143 ----------DVSHNTQLTELDCHLNKKITK---L---DVTPQTQLTTLDCSFN-KITELD-------VSQ----NKLLN 194 (457)
T ss_dssp ----------CCTTCTTCCEEECTTCSCCCC---C---CCTTCTTCCEEECCSS-CCCCCC-------CTT----CTTCC
T ss_pred ----------ccccCCcCCEEECCCCCcccc---c---ccccCCcCCEEECCCC-ccceec-------ccc----CCCCC
Confidence 012344555555555543332 1 1345566666666664 444432 111 26677
Q ss_pred EEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeeccc
Q 005813 269 YLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGC 348 (676)
Q Consensus 269 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c 348 (676)
+|++++|. ++.+ .+..+++|++|++++|. +..+| ...+++|+.|++++|. ++.++. ..+++|+.|++++.
T Consensus 195 ~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N~-l~~ip-~~~l~~L~~L~l~~N~-l~~~~~----~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 195 RLNCDTNN-ITKL--DLNQNIQLTFLDCSSNK-LTEID-VTPLTQLTYFDCSVNP-LTELDV----STLSKLTTLHCIQT 264 (457)
T ss_dssp EEECCSSC-CSCC--CCTTCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSSC-CSCCCC----TTCTTCCEEECTTC
T ss_pred EEECcCCc-CCee--ccccCCCCCEEECcCCc-ccccC-ccccCCCCEEEeeCCc-CCCcCH----HHCCCCCEEeccCC
Confidence 77777654 3333 26677778888887754 55565 5557778888888776 665552 55677777776652
Q ss_pred ccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCC
Q 005813 349 RSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNL 428 (676)
Q Consensus 349 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 428 (676)
+++.++++++..+..++. ..+++|+.|++++|..+.. ++..
T Consensus 265 -------------~L~~L~l~~n~~~~~~~~-----------~~l~~L~~L~Ls~n~~l~~-l~~~-------------- 305 (457)
T 3bz5_A 265 -------------DLLEIDLTHNTQLIYFQA-----------EGCRKIKELDVTHNTQLYL-LDCQ-------------- 305 (457)
T ss_dssp -------------CCSCCCCTTCTTCCEEEC-----------TTCTTCCCCCCTTCTTCCE-EECT--------------
T ss_pred -------------CCCEEECCCCccCCcccc-----------cccccCCEEECCCCcccce-eccC--------------
Confidence 255566666554444431 1234566666666654443 1110
Q ss_pred CCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCc
Q 005813 429 PPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCK 489 (676)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 489 (676)
..+++.|++++ +++|++|++++| .++.++ +..+++|+.|++++|.
T Consensus 306 ~~~L~~L~l~~-------------~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 306 AAGITELDLSQ-------------NPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCCSCCCCTT-------------CTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred CCcceEechhh-------------cccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 13344443333 356666666666 444442 5556666666666643
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=9.1e-22 Score=207.09 Aligned_cols=146 Identities=17% Similarity=0.128 Sum_probs=96.4
Q ss_pred CccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccE
Q 005813 479 KLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRR 558 (676)
Q Consensus 479 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 558 (676)
+|+.|++++|. +..++. ..+++|+.|++++|. +...+ .+..+++|++|++++|......+ ..+.++++|+.
T Consensus 206 ~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~ 276 (390)
T 3o6n_A 206 AVEELDASHNS-INVVRG--PVNVELTILKLQHNN-LTDTA-WLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLER 276 (390)
T ss_dssp SCSEEECCSSC-CCEEEC--CCCSSCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCE
T ss_pred cceEEECCCCe-eeeccc--cccccccEEECCCCC-CcccH-HHcCCCCccEEECCCCcCCCcCh----hHccccccCCE
Confidence 45555555543 222222 223556666666653 22232 45666777777777776555433 34777888888
Q ss_pred EEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCCcccccee
Q 005813 559 LTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRL 638 (676)
Q Consensus 559 L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L 638 (676)
|++++| .+..++.... .+++|+.|++++ +.++.+|..+..+++|++|++++| .++.++.. ..++|++|
T Consensus 277 L~L~~n--~l~~~~~~~~-------~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~L~~L 344 (390)
T 3o6n_A 277 LYISNN--RLVALNLYGQ-------PIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SIVTLKLS-THHTLKNL 344 (390)
T ss_dssp EECCSS--CCCEEECSSS-------CCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CCCCCCCC-TTCCCSEE
T ss_pred EECCCC--cCcccCcccC-------CCCCCCEEECCC-CcceecCccccccCcCCEEECCCC-ccceeCch-hhccCCEE
Confidence 888887 7776654332 347888888888 578888877788889999999988 57777643 35789999
Q ss_pred eecCChh
Q 005813 639 YIVGCPL 645 (676)
Q Consensus 639 ~i~~c~~ 645 (676)
++++||.
T Consensus 345 ~l~~N~~ 351 (390)
T 3o6n_A 345 TLSHNDW 351 (390)
T ss_dssp ECCSSCE
T ss_pred EcCCCCc
Confidence 9998874
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=8.8e-22 Score=207.17 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccccc
Q 005813 203 IPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLP 282 (676)
Q Consensus 203 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~ 282 (676)
+++++.|.++++.... ++...+..+++|++|+++++ .++.+++.. +..+ ++|++|++++|......|
T Consensus 44 l~~l~~l~l~~~~l~~----l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK----LPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp GCCCSEEEEESCEESE----ECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCT
T ss_pred cCCceEEEecCCchhh----CChhHhcccccCcEEECCCC-cccccChhh----ccCC----CCcCEEECCCCCCCcCCH
Confidence 5677777777765332 56666677777777777775 455554431 2223 777777777765333344
Q ss_pred ccccCCCCCceEeecCCCCCCCCCCc--cCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecc
Q 005813 283 QSSLSLSSLREIEICSCHSLVSFPEV--ALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYG 347 (676)
Q Consensus 283 ~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 347 (676)
..+..+++|++|++++|. +..++.. ..+++|++|++++|. +..++...+ ..+++|+.|++++
T Consensus 111 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSS 174 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCS
T ss_pred HHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCC
Confidence 556777777777777753 5555553 336777777777776 555444322 5667777777766
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=210.85 Aligned_cols=273 Identities=21% Similarity=0.201 Sum_probs=175.9
Q ss_pred CcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCc--cCCCCccEEeeccccCcCcCchhhccCCCCCccE
Q 005813 265 CRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEV--ALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEI 342 (676)
Q Consensus 265 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 342 (676)
++|++|++++|......|..+..+++|++|++++|. +..++.. ..+++|++|++++|. +..++...+ ..+++|+.
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~ 132 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENK-IVILLDYMF-QDLYNLKS 132 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCc-cccCChhHc-cccccCCE
Confidence 555555555543222234555566666666666543 4444432 235666666666655 333322222 45566666
Q ss_pred EeecccccccccccccC--CCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhh
Q 005813 343 LHIYGCRSLTYIAAVQV--PSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATL 420 (676)
Q Consensus 343 L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 420 (676)
|++++ +.++.+....+ .++|+.|++.++ .++.++. ..+
T Consensus 133 L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--------------------------------------~~l 172 (477)
T 2id5_A 133 LEVGD-NDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPT--------------------------------------EAL 172 (477)
T ss_dssp EEECC-TTCCEECTTSSTTCTTCCEEEEESC-CCSSCCH--------------------------------------HHH
T ss_pred EECCC-CccceeChhhccCCCCCCEEECCCC-cCcccCh--------------------------------------hHh
Confidence 66655 23333322111 123344443332 1111110 000
Q ss_pred hccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCccccc-cccc
Q 005813 421 ESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALP-KGLH 499 (676)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 499 (676)
.. .++|+.|+++++......+..+..+++|++|++++|.....++.......+|+.|++++|. +..+| ..+.
T Consensus 173 ~~------l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~ 245 (477)
T 2id5_A 173 SH------LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVR 245 (477)
T ss_dssp TT------CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHT
T ss_pred cc------cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhc
Confidence 00 2578888888776555555678889999999999998888888877777799999999976 45565 4678
Q ss_pred CCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccccccc
Q 005813 500 NLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLG 579 (676)
Q Consensus 500 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~ 579 (676)
.+++|+.|++++|......+..+..+++|++|++++|......+ ..+.++++|+.|++++| .+..++...
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~---- 315 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGN--QLTTLEESV---- 315 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTTCCEEECCSS--CCSCCCGGG----
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH----HHhcCcccCCEEECCCC--cCceeCHhH----
Confidence 99999999999986544444567889999999999998877655 46889999999999998 888877643
Q ss_pred CCCCCCCCccEEeecCCCCcc
Q 005813 580 TTLPLPASLTSLGISNFPNLE 600 (676)
Q Consensus 580 ~~~~~~~~L~~L~l~~c~~l~ 600 (676)
+..+++|+.|++++ +.+.
T Consensus 316 --~~~l~~L~~L~l~~-N~l~ 333 (477)
T 2id5_A 316 --FHSVGNLETLILDS-NPLA 333 (477)
T ss_dssp --BSCGGGCCEEECCS-SCEE
T ss_pred --cCCCcccCEEEccC-CCcc
Confidence 23458999999999 5554
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.2e-21 Score=207.36 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=46.6
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCC------
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTS------ 503 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~------ 503 (676)
++|+.|++++|.... + .+..+++|++|++++| .++.+| +..+++|+.|++++|.. ..+| ...+++
T Consensus 191 ~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~l-~~~~--~~~l~~L~~L~l 261 (457)
T 3bz5_A 191 KLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNPL-TELD--VSTLSKLTTLHC 261 (457)
T ss_dssp TTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCC-SCCC--CTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCCe-e--ccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCcC-CCcC--HHHCCCCCEEec
Confidence 455555555543222 2 2445566666666655 344444 44555666666665542 2222 223333
Q ss_pred ----ccceeeeccCCCCCCCcCCCCCCccceeeccCcch
Q 005813 504 ----LQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNME 538 (676)
Q Consensus 504 ----L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~ 538 (676)
|+.|++++|.....++ .+.+++|+.|++++|..
T Consensus 262 ~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 262 IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence 3444444444333333 34455666666666543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=8.1e-21 Score=210.97 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=56.9
Q ss_pred CCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCccc
Q 005813 522 DDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLER 601 (676)
Q Consensus 522 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~ 601 (676)
+..+++|+.|++++|......+ ..+.++++|+.|++++| .+..++.... .+++|+.|++++ +.+..
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~~-------~l~~L~~L~Ls~-N~l~~ 315 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNN--RLVALNLYGQ-------PIPTLKVLDLSH-NHLLH 315 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECTTS--CCCEEECSSS-------CCTTCCEEECCS-SCCCC
T ss_pred hccCCCCCEEECCCCccCCCCH----HHhcCccCCCEEECCCC--CCCCCCcccc-------cCCCCcEEECCC-CCCCc
Confidence 4444555555555554443322 23555566666666665 5554443221 235666666666 45556
Q ss_pred chhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCCh
Q 005813 602 LSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCP 644 (676)
Q Consensus 602 l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~ 644 (676)
+|..+..+++|+.|++++| .++.++.. ..++|++|++++||
T Consensus 316 i~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHN-SIVTLKLS-THHTLKNLTLSHND 356 (597)
T ss_dssp CGGGHHHHTTCSEEECCSS-CCCCCCCC-TTCCCSEEECCSSC
T ss_pred cCcccccCCCCCEEECCCC-CCCCcChh-hcCCCCEEEeeCCC
Confidence 6655556666666666665 35555432 23566666666665
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=8.4e-21 Score=210.86 Aligned_cols=307 Identities=16% Similarity=0.159 Sum_probs=199.3
Q ss_pred CCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccccc
Q 005813 203 IPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLP 282 (676)
Q Consensus 203 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~ 282 (676)
+++++.+.+.++.... ++..++..+++|++|++.++ .++.+++.. +..+ ++|++|++++|......|
T Consensus 50 l~~l~~l~l~~~~l~~----lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRK----LPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GCCCSEEEESSCEESE----ECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCT
T ss_pred CCCceEEEeeCCCCCC----cCHHHHccCCCCcEEECCCC-CCCCCChHH----hcCC----CCCCEEECCCCcCCCCCH
Confidence 5677888888765433 67777788888888888885 566665432 3333 888888888876434344
Q ss_pred ccccCCCCCceEeecCCCCCCCCCCc--cCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCC
Q 005813 283 QSSLSLSSLREIEICSCHSLVSFPEV--ALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVP 360 (676)
Q Consensus 283 ~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 360 (676)
..+..+++|++|++++|. +..+|.. ..+++|++|++++|. +..++...+ ..+++|+.|+++++ .++.++...+
T Consensus 117 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~l- 191 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDLSLI- 191 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTS-CCSBCCGGGC-
T ss_pred HHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCC-CCCCcChhhh-
Confidence 567888888888888864 5666653 347888888888887 555554333 67788888888873 4554443322
Q ss_pred CCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCC
Q 005813 361 SSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGC 440 (676)
Q Consensus 361 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 440 (676)
++|+.++++++ .+..++ .+.+|+.|++++|
T Consensus 192 ~~L~~L~l~~n-~l~~l~-------------------------------------------------~~~~L~~L~ls~n 221 (597)
T 3oja_B 192 PSLFHANVSYN-LLSTLA-------------------------------------------------IPIAVEELDASHN 221 (597)
T ss_dssp TTCSEEECCSS-CCSEEE-------------------------------------------------CCTTCSEEECCSS
T ss_pred hhhhhhhcccC-cccccc-------------------------------------------------CCchhheeeccCC
Confidence 22555554442 111111 1356677777665
Q ss_pred CChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCc
Q 005813 441 SKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEE 520 (676)
Q Consensus 441 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 520 (676)
.. ..++.. ..++|+.|++++| .++.. ..+..+++|+.|++++|......|..+..+++|+.|++++|. +..++.
T Consensus 222 ~l-~~~~~~--~~~~L~~L~L~~n-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~ 295 (597)
T 3oja_B 222 SI-NVVRGP--VNVELTILKLQHN-NLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL 295 (597)
T ss_dssp CC-CEEECS--CCSCCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC
T ss_pred cc-cccccc--cCCCCCEEECCCC-CCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCc
Confidence 43 222221 2467888888887 44443 345667888888888877555556677788888888888764 445555
Q ss_pred CCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcc
Q 005813 521 EDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLE 600 (676)
Q Consensus 521 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~ 600 (676)
....+|+|+.|++++|.....+. .+..+++|+.|++++| .+..++. ..+++|+.|++++ +.+.
T Consensus 296 ~~~~l~~L~~L~Ls~N~l~~i~~-----~~~~l~~L~~L~L~~N--~l~~~~~---------~~~~~L~~L~l~~-N~~~ 358 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNHLLHVER-----NQPQFDRLENLYLDHN--SIVTLKL---------STHHTLKNLTLSH-NDWD 358 (597)
T ss_dssp SSSCCTTCCEEECCSSCCCCCGG-----GHHHHTTCSEEECCSS--CCCCCCC---------CTTCCCSEEECCS-SCEE
T ss_pred ccccCCCCcEEECCCCCCCccCc-----ccccCCCCCEEECCCC--CCCCcCh---------hhcCCCCEEEeeC-CCCC
Confidence 56667888888888887664332 3567788888888887 6655542 1346778888877 3443
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=5.1e-22 Score=221.26 Aligned_cols=395 Identities=10% Similarity=0.042 Sum_probs=241.8
Q ss_pred CCCCcceEeecCCCCchhhhhccchhhccCCC-ccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCccc
Q 005813 202 RIPKLEELGINNMKNETHIWKSHNELLQDICS-LKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVK 280 (676)
Q Consensus 202 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 280 (676)
.+++|++|+++++..... .+..+...++. |++|++.+|..+.. . .+..+...+++|++|++++|.....
T Consensus 110 ~~~~L~~L~L~~~~i~~~---~~~~l~~~~~~~L~~L~L~~~~~~~~---~----~l~~~~~~~~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDL---DLDRLAKARADDLETLKLDKCSGFTT---D----GLLSIVTHCRKIKTLLMEESSFSEK 179 (592)
T ss_dssp HCTTCCEEEEESCBCCHH---HHHHHHHHHGGGCCEEEEESCEEEEH---H----HHHHHHHHCTTCSEEECTTCEEECC
T ss_pred hCCCCCeEEeeccEecHH---HHHHHHHhccccCcEEECcCCCCcCH---H----HHHHHHhhCCCCCEEECccccccCc
Confidence 578888888888854332 23333333555 99999998864332 1 2444444568999999998853222
Q ss_pred ----ccccccCCCCCceEeecCCCCCCCC-----CC-ccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeeccccc
Q 005813 281 ----LPQSSLSLSSLREIEICSCHSLVSF-----PE-VALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRS 350 (676)
Q Consensus 281 ----l~~~~~~l~~L~~L~l~~~~~l~~~-----~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 350 (676)
++.....+++|++|+++++. +..+ +. ...+++|++|++++|. +..++..+ ..+++|++|++..+..
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNE 255 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCC
T ss_pred chhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhccccccc
Confidence 33344578899999998865 3322 11 2237889999999987 66666554 6788999999875332
Q ss_pred ccc----cccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccC
Q 005813 351 LTY----IAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVG 426 (676)
Q Consensus 351 l~~----~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 426 (676)
... ......+++|+.+++.++. ...++ . ....+++|++|++++|. +.... +...+.
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~--~-------~~~~~~~L~~L~Ls~~~-l~~~~----~~~~~~----- 315 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMP--I-------LFPFAAQIRKLDLLYAL-LETED----HCTLIQ----- 315 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCC-TTTGG--G-------GGGGGGGCCEEEETTCC-CCHHH----HHHHHT-----
T ss_pred ccchHHHHHHhhccccccccCccccc-hhHHH--H-------HHhhcCCCcEEecCCCc-CCHHH----HHHHHH-----
Confidence 211 1122334568888776642 12222 1 11235689999999987 33201 000011
Q ss_pred CCCCCcceEEEcCCCChhhHHHhhccCCccceeeccC----------CCCccc--cCCCCCCCCCccEEEeecCcCcccc
Q 005813 427 NLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDS----------CKNLVS--FPEGGLPCAKLRTLAISNCKRLEAL 494 (676)
Q Consensus 427 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~----------~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~ 494 (676)
-.++|+.|++.++.....++.....+++|++|++++ |..++. +......+++|+.|++..+......
T Consensus 316 -~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 316 -KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp -TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred -hCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 137899999985433344555567799999999995 655553 2222345789999999554433333
Q ss_pred ccccc-CCCCccceeeec---cCCCCCCCc------CCCCCCccceeeccCcch--hhhhhhhccccccccccccEEEEe
Q 005813 495 PKGLH-NLTSLQQLTIGI---GGALPSLEE------EDDLPTNLQSLNIWGNME--IWKSMIERGRGFHRFSSLRRLTIS 562 (676)
Q Consensus 495 ~~~~~-~l~~L~~L~l~~---c~~l~~~~~------~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~l~~L~~L~l~ 562 (676)
+..+. .+++|+.|++.+ |+.++..|. .+..+++|++|++++|.. ...... .....+++|+.|+++
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~---~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS---YIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH---HHHHSCTTCCEEEEC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH---HHHHhCccceEeecc
Confidence 33343 488999999985 445554321 144588999999987653 222221 123458899999999
Q ss_pred cCCCcccccccccccccCCCCCCCCccEEeecCCCCccc--chhhcCCCCCccEEEeCCCCCccccCCCCC---ccccce
Q 005813 563 RCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLER--LSSSIVDLQNLTELYLADCPKLKYFPEKGL---PSSLLR 637 (676)
Q Consensus 563 ~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l---~~~L~~ 637 (676)
+| .+..... ......+++|+.|++++|+ ++. ++.....+++|++|++++|+ ++......+ .+.+..
T Consensus 472 ~n--~l~~~~~-----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 472 YV--GESDEGL-----MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp SC--CSSHHHH-----HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEE
T ss_pred CC--CCCHHHH-----HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEE
Confidence 97 4432111 1112244889999999976 542 44455678999999999995 655433333 344555
Q ss_pred eeecCC
Q 005813 638 LYIVGC 643 (676)
Q Consensus 638 L~i~~c 643 (676)
..+...
T Consensus 543 ~~~~~~ 548 (592)
T 3ogk_B 543 ELIPSR 548 (592)
T ss_dssp EEECCC
T ss_pred EEecCc
Confidence 555443
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=2.2e-21 Score=216.08 Aligned_cols=204 Identities=14% Similarity=0.129 Sum_probs=114.3
Q ss_pred cCCcccEEEEccCCCccccc----CCCCCC-ccEEEEcCCcChhhc-----ccCCCceeEEEEcCCCCeeEEeeccccCC
Q 005813 111 WFPKLRELHIIRCSKLQGTF----PEHLPA-LEMLAIEGCEELLVS-----VASLPALCKFEIGGCKKVVWRSATDHLGS 180 (676)
Q Consensus 111 ~~~~L~~L~l~~c~~l~~~~----~~~~~~-L~~L~i~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 180 (676)
.+++|++|++++|. +.+.. ...+++ |++|++.+|..+... ...+++|++|++++|..... ..
T Consensus 110 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~------ 181 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK-DG------ 181 (592)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC-CS------
T ss_pred hCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc-ch------
Confidence 46777777777662 22111 122334 777777777643221 34688899999988842110 00
Q ss_pred CcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHH
Q 005813 181 QNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQL 260 (676)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l 260 (676)
.+.......+++|++|+++++.............+..+++|++|++.+| .+..++. .+..+
T Consensus 182 -------------~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~-----~~~~~ 242 (592)
T 3ogk_B 182 -------------KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVG-----FFKAA 242 (592)
T ss_dssp -------------HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHH-----HHHHC
T ss_pred -------------hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHH-----HHhhh
Confidence 0000112346778888887766431000133445567788888888885 3443332 24444
Q ss_pred hhcCCcceEEEecCCCCc---ccccccccCCCCCceEeecCCCCCCCCCCc-cCCCCccEEeeccccCcCcCchhhccCC
Q 005813 261 CELSCRLEYLRLSECKGL---VKLPQSSLSLSSLREIEICSCHSLVSFPEV-ALPSKLRKIEIRYCDALKSLPEAWMCDT 336 (676)
Q Consensus 261 ~~~~~~L~~L~l~~~~~l---~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 336 (676)
++|++|+++.+... ...+..+..+++|+.|+++++. ...++.. ..+++|++|++++|. ++..........
T Consensus 243 ----~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~ 316 (592)
T 3ogk_B 243 ----ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQK 316 (592)
T ss_dssp ----TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTT
T ss_pred ----hHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHh
Confidence 88888888754322 2234456677788888887642 3334432 336778888888776 433222111156
Q ss_pred CCCccEEeecc
Q 005813 337 NSSLEILHIYG 347 (676)
Q Consensus 337 l~~L~~L~l~~ 347 (676)
+++|+.|++.+
T Consensus 317 ~~~L~~L~L~~ 327 (592)
T 3ogk_B 317 CPNLEVLETRN 327 (592)
T ss_dssp CTTCCEEEEEG
T ss_pred CcCCCEEeccC
Confidence 77777777763
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.9e-19 Score=184.78 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=54.6
Q ss_pred ccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeecc
Q 005813 455 SLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIW 534 (676)
Q Consensus 455 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 534 (676)
+|++|++++| .++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 173 ~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 173 KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 5666666665 3444544332 466666666654333333445556666666666553332222234455555555555
Q ss_pred CcchhhhhhhhccccccccccccEEEEecCCCcccccc
Q 005813 535 GNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFP 572 (676)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~ 572 (676)
+|.....+. .+..+++|+.|++++| .+..++
T Consensus 250 ~N~l~~lp~-----~l~~l~~L~~L~l~~N--~l~~~~ 280 (332)
T 2ft3_A 250 NNKLSRVPA-----GLPDLKLLQVVYLHTN--NITKVG 280 (332)
T ss_dssp SSCCCBCCT-----TGGGCTTCCEEECCSS--CCCBCC
T ss_pred CCcCeecCh-----hhhcCccCCEEECCCC--CCCccC
Confidence 554442211 3455555555555555 444444
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=6e-19 Score=180.99 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=86.8
Q ss_pred HHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCC
Q 005813 447 AERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPT 526 (676)
Q Consensus 447 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 526 (676)
+..+..+++|++|++++| .++.+|.... ++|+.|++++|......+..+..+++|++|++++|......+..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 344566777777777777 4555555433 6777777777654433345666777777777777643332233455566
Q ss_pred ccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCccc--c-h
Q 005813 527 NLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLER--L-S 603 (676)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~--l-~ 603 (676)
+|++|++++|.....+ ..+..+++|+.|++++| .+..++...-.-.......++++.|++.+ +.+.. + |
T Consensus 241 ~L~~L~L~~N~l~~lp-----~~l~~l~~L~~L~l~~N--~i~~~~~~~f~~~~~~~~~~~l~~l~l~~-N~~~~~~i~~ 312 (330)
T 1xku_A 241 HLRELHLNNNKLVKVP-----GGLADHKYIQVVYLHNN--NISAIGSNDFCPPGYNTKKASYSGVSLFS-NPVQYWEIQP 312 (330)
T ss_dssp TCCEEECCSSCCSSCC-----TTTTTCSSCCEEECCSS--CCCCCCTTSSSCSSCCTTSCCCSEEECCS-SSSCGGGSCG
T ss_pred CCCEEECCCCcCccCC-----hhhccCCCcCEEECCCC--cCCccChhhcCCcccccccccccceEeec-CcccccccCc
Confidence 6666666666555322 23566666777777666 55555543200000011124455555555 23322 1 2
Q ss_pred hhcCCCCCccEEEeCCC
Q 005813 604 SSIVDLQNLTELYLADC 620 (676)
Q Consensus 604 ~~~~~~~~L~~L~l~~c 620 (676)
..+..+++|+.+++++|
T Consensus 313 ~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGTTCCCGGGEEC---
T ss_pred cccccccceeEEEeccc
Confidence 34455555555555554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=8.2e-19 Score=179.96 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcc--ccCCCCCCCCCccEEEeecCcCcccccccccCCCCccce
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLV--SFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQL 507 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 507 (676)
++|++|++++|......+..+..+++|++|++++|.... ..+..+..+++|+.|++++|. +..+|..+. ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEE
Confidence 345555555554444445556778888888888874321 233345556677777776654 333443222 455555
Q ss_pred eeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 508 TIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 508 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
++++|......+..+..+++|++|++++|....... ..+..+++|+.|++++|
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----GSLANTPHLRELHLNNN 250 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----TTGGGSTTCCEEECCSS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh----hhccCCCCCCEEECCCC
Confidence 555543222223334444555555555554433222 12444444555555544
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=7.3e-19 Score=180.48 Aligned_cols=195 Identities=16% Similarity=0.113 Sum_probs=127.2
Q ss_pred CcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcc--ccCCCCCCCCCccEEEeecCcCcccccccccCCCCcccee
Q 005813 431 SLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLV--SFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLT 508 (676)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 508 (676)
+|++|++++|......+..+..+++|++|++++|..-. ..+..+..+ +|+.|++++|. +..+|..+. ++|++|+
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~ 199 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELH 199 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCB
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEE
Confidence 34444444443322223346678888888888884321 234445555 88999998865 455665443 6889999
Q ss_pred eeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCc
Q 005813 509 IGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASL 588 (676)
Q Consensus 509 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L 588 (676)
+++|......+..+..+++|++|++++|....... ..+..+++|+.|++++| .+..+|.....+ ++|
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~lp~~l~~l-------~~L 266 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLDNN--KLSRVPAGLPDL-------KLL 266 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT----TGGGGCTTCCEEECCSS--CCCBCCTTGGGC-------TTC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh----hHhhCCCCCCEEECCCC--cCeecChhhhcC-------ccC
Confidence 98876544444567788889999998887766544 34778888888888887 777777654333 788
Q ss_pred cEEeecCCCCcccchh-hcCC------CCCccEEEeCCCCCcc--ccCCCCC--ccccceeeecCCh
Q 005813 589 TSLGISNFPNLERLSS-SIVD------LQNLTELYLADCPKLK--YFPEKGL--PSSLLRLYIVGCP 644 (676)
Q Consensus 589 ~~L~l~~c~~l~~l~~-~~~~------~~~L~~L~l~~c~~l~--~i~~~~l--~~~L~~L~i~~c~ 644 (676)
+.|++++ +.++.++. .+.. .++|+.|++++|+ +. .+++..+ .++|+.+++++|.
T Consensus 267 ~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCC-CCCCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 8888888 67777764 3322 4678888888886 33 3333333 5778888888774
No 47
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.1e-21 Score=218.85 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=49.0
Q ss_pred CCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEE-EecCCCCcccc
Q 005813 203 IPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYL-RLSECKGLVKL 281 (676)
Q Consensus 203 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L-~l~~~~~l~~l 281 (676)
+++|++|++.+|...+. ....+..+++|++|++..+.. .+....+. .+......+++|+.| .+.+. ....+
T Consensus 210 ~~~L~~L~L~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~--~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~-~~~~l 281 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEK----LATLLQRAPQLEELGTGGYTA--EVRPDVYS-GLSVALSGCKELRCLSGFWDA-VPAYL 281 (594)
T ss_dssp CTTCCEEECCTTSCHHH----HHHHHHHCTTCSEEECSBCCC--CCCHHHHH-HHHHHHHTCTTCCEEECCBTC-CGGGG
T ss_pred CCCCcEEecCCCCcHHH----HHHHHhcCCcceEcccccccC--ccchhhHH-HHHHHHhcCCCcccccCCccc-chhhH
Confidence 45666666666644442 234455666677776665432 01111000 011111233556655 22221 11223
Q ss_pred cccccCCCCCceEeecCCCCCCCCC--C-ccCCCCccEEeeccc
Q 005813 282 PQSSLSLSSLREIEICSCHSLVSFP--E-VALPSKLRKIEIRYC 322 (676)
Q Consensus 282 ~~~~~~l~~L~~L~l~~~~~l~~~~--~-~~~~~~L~~L~l~~~ 322 (676)
+..+..+++|++|++++|. +.... . ...+++|++|++++|
T Consensus 282 ~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 3333455666666666654 32111 0 123455666666555
No 48
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=8.4e-21 Score=211.52 Aligned_cols=204 Identities=17% Similarity=0.220 Sum_probs=123.9
Q ss_pred cCCcccEEEEccCCCcccc----cCCCCCCccEEEEcCCcChhh-----cccCCCceeEEEEcCCCCeeEEeeccccCCC
Q 005813 111 WFPKLRELHIIRCSKLQGT----FPEHLPALEMLAIEGCEELLV-----SVASLPALCKFEIGGCKKVVWRSATDHLGSQ 181 (676)
Q Consensus 111 ~~~~L~~L~l~~c~~l~~~----~~~~~~~L~~L~i~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 181 (676)
.+++|++|++++|. +.+. +...+++|++|++.+|..+.. ....+++|++|++++|. +.....
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~------- 173 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSG------- 173 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCG-------
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcch-------
Confidence 56778888887764 3211 223467888888887754332 24468899999999886 221110
Q ss_pred cceeecCCCCceeccCCCCCCCCCcceEeecCCC-CchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHH
Q 005813 182 NSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMK-NETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQL 260 (676)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l 260 (676)
.+.......+++|++|+++++. .+.. .....+...+++|++|++.+|..+..++. .+..+
T Consensus 174 ------------~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-----~~~~~ 234 (594)
T 2p1m_B 174 ------------HWLSHFPDTYTSLVSLNISCLASEVSF--SALERLVTRCPNLKSLKLNRAVPLEKLAT-----LLQRA 234 (594)
T ss_dssp ------------GGGGGSCTTCCCCCEEECTTCCSCCCH--HHHHHHHHHCTTCCEEECCTTSCHHHHHH-----HHHHC
T ss_pred ------------HHHHHHhhcCCcCcEEEecccCCcCCH--HHHHHHHHhCCCCcEEecCCCCcHHHHHH-----HHhcC
Confidence 0112234567889999998886 2221 12334456678999999998866555322 23333
Q ss_pred hhcCCcceEEEecCCCC------cccccccccCCCCCceE-eecCCCCCCCCCCcc-CCCCccEEeeccccCcCcCchhh
Q 005813 261 CELSCRLEYLRLSECKG------LVKLPQSSLSLSSLREI-EICSCHSLVSFPEVA-LPSKLRKIEIRYCDALKSLPEAW 332 (676)
Q Consensus 261 ~~~~~~L~~L~l~~~~~------l~~l~~~~~~l~~L~~L-~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~ 332 (676)
++|++|++..+.. +..++..+.++++|+.| .+.+.. ...++... .+++|++|++++|. ++......
T Consensus 235 ----~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~ 308 (594)
T 2p1m_B 235 ----PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVK 308 (594)
T ss_dssp ----TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHH
T ss_pred ----CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHH
Confidence 8899998776642 23344467788888888 444322 22333322 36888888888887 54322221
Q ss_pred ccCCCCCccEEeeccc
Q 005813 333 MCDTNSSLEILHIYGC 348 (676)
Q Consensus 333 ~~~~l~~L~~L~l~~c 348 (676)
+...+++|++|++.+|
T Consensus 309 ~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 309 LLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCTTCCEEEEEGG
T ss_pred HHhcCCCcCEEeCcCc
Confidence 1257788888888876
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=5.1e-21 Score=206.29 Aligned_cols=388 Identities=17% Similarity=0.163 Sum_probs=225.2
Q ss_pred CCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccc
Q 005813 204 PKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQ 283 (676)
Q Consensus 204 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~ 283 (676)
++|++|+++++..... ....++..+++|++|++++|. ++......+...+. .+++|++|++++|......+.
T Consensus 3 ~~l~~L~Ls~~~l~~~---~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~----~~~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALR----VNPALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEEEESCCCCHH---HHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHH----TCTTCCEEECTTCCCHHHHHH
T ss_pred ccceehhhhhcccCch---hHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHH----hCCCcCEEeCCCCcCChHHHH
Confidence 5788888887775443 334456788889999998874 55432222222233 338888888888753322222
Q ss_pred c-ccCCC----CCceEeecCCCCCCC-----CCC-ccCCCCccEEeeccccCcCcCch-----hhccCCCCCccEEeecc
Q 005813 284 S-SLSLS----SLREIEICSCHSLVS-----FPE-VALPSKLRKIEIRYCDALKSLPE-----AWMCDTNSSLEILHIYG 347 (676)
Q Consensus 284 ~-~~~l~----~L~~L~l~~~~~l~~-----~~~-~~~~~~L~~L~l~~~~~l~~~~~-----~~~~~~l~~L~~L~l~~ 347 (676)
. ...++ +|++|++++|. +.. ++. ...+++|++|++++|. +..... ... ...++|++|++++
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~-~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLL-DPQCRLEKLQLEY 151 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHT-STTCCCCEEECTT
T ss_pred HHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHh-cCCCcceEEECCC
Confidence 1 12233 68888888875 332 121 3446788888888776 433211 111 2345677777777
Q ss_pred cccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCC
Q 005813 348 CRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGN 427 (676)
Q Consensus 348 c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 427 (676)
| .++......++ . ....+++|++|+++++. +.+ .....+...+. .
T Consensus 152 n-~l~~~~~~~l~--------------------~-------~l~~~~~L~~L~L~~n~-i~~-~~~~~l~~~l~-----~ 196 (461)
T 1z7x_W 152 C-SLSAASCEPLA--------------------S-------VLRAKPDFKELTVSNND-INE-AGVRVLCQGLK-----D 196 (461)
T ss_dssp S-CCBGGGHHHHH--------------------H-------HHHHCTTCCEEECCSSB-CHH-HHHHHHHHHHH-----H
T ss_pred C-CCCHHHHHHHH--------------------H-------HHhhCCCCCEEECcCCC-cch-HHHHHHHHHHh-----c
Confidence 5 33332111000 0 00011234444444432 111 00000000000 0
Q ss_pred CCCCcceEEEcCCCChh----hHHHhhccCCccceeeccCCCCcccc------CCCCCCCCCccEEEeecCcCccc----
Q 005813 428 LPPSLKSIRVGGCSKLE----SIAERLDNNTSLETISIDSCKNLVSF------PEGGLPCAKLRTLAISNCKRLEA---- 493 (676)
Q Consensus 428 ~~~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~l~~~~~~~~---- 493 (676)
..++|++|++++|.... .++..+..+++|++|++++| .+.+. +.....+++|+.|++++|.....
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 02478888888876543 35677778899999999988 44432 11223478999999999854332
Q ss_pred ccccccCCCCccceeeeccCCCCC----CCcC-CCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcc
Q 005813 494 LPKGLHNLTSLQQLTIGIGGALPS----LEEE-DDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDM 568 (676)
Q Consensus 494 ~~~~~~~l~~L~~L~l~~c~~l~~----~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l 568 (676)
++..+..+++|++|++++|..-.. +... ....++|++|++++|.............+..+++|+.|++++| .+
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i 353 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN--RL 353 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS--BC
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC--cc
Confidence 555667789999999998743211 1111 1234699999999998765432211134678899999999998 65
Q ss_pred cccccccccccCCC-CCCCCccEEeecCCCCcc-----cchhhcCCCCCccEEEeCCCCCccccCCCC----C---cccc
Q 005813 569 VSFPLEDKRLGTTL-PLPASLTSLGISNFPNLE-----RLSSSIVDLQNLTELYLADCPKLKYFPEKG----L---PSSL 635 (676)
Q Consensus 569 ~~i~~~~~~l~~~~-~~~~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~----l---~~~L 635 (676)
....... +...+ ...++|+.|++++| .++ .++..+..+++|++|++++| .+....... + ..+|
T Consensus 354 ~~~~~~~--l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L 429 (461)
T 1z7x_W 354 EDAGVRE--LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLL 429 (461)
T ss_dssp HHHHHHH--HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCC
T ss_pred ccccHHH--HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcch
Confidence 5432211 11101 12479999999995 666 67878888999999999998 455432211 1 2368
Q ss_pred ceeeecCCh
Q 005813 636 LRLYIVGCP 644 (676)
Q Consensus 636 ~~L~i~~c~ 644 (676)
+.|++.++.
T Consensus 430 ~~L~~~~~~ 438 (461)
T 1z7x_W 430 EQLVLYDIY 438 (461)
T ss_dssp CEEECTTCC
T ss_pred hheeecccc
Confidence 888877764
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.7e-18 Score=177.88 Aligned_cols=204 Identities=17% Similarity=0.152 Sum_probs=150.3
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC--CCCCCCCccEEEeecCcCcccc-cccccCCCCccc
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE--GGLPCAKLRTLAISNCKRLEAL-PKGLHNLTSLQQ 506 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~ 506 (676)
++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.|++++|..+..+ +..+..+++|++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 45666666655433333444778899999999988 5666665 5677899999999998656655 446788999999
Q ss_pred eeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCC
Q 005813 507 LTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPA 586 (676)
Q Consensus 507 L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~ 586 (676)
|++++|......+..+..+++|++|++++|....... ..+..+++|+.|++++| .+..++... + ......+
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n--~l~~~~~~~--l-~~~~~~~ 249 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELRDT--DLDTFHFSE--L-STGETNS 249 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEEESC--BCTTCCCC---------CCC
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchh----hhhhhcccccEEECCCC--ccccccccc--c-ccccccc
Confidence 9999986555556678889999999999998755444 23567899999999998 776665432 1 1122346
Q ss_pred CccEEeecCCCCc-----ccchhhcCCCCCccEEEeCCCCCccccCCCCC--ccccceeeecCChh
Q 005813 587 SLTSLGISNFPNL-----ERLSSSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGCPL 645 (676)
Q Consensus 587 ~L~~L~l~~c~~l-----~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~~ 645 (676)
.++.+++.++ .+ ..+|..+..+++|++|++++| +++.+|...+ .++|++|++++|+.
T Consensus 250 ~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 250 LIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 6788888874 34 357778899999999999998 7889988543 68999999999973
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=8e-19 Score=179.37 Aligned_cols=231 Identities=19% Similarity=0.245 Sum_probs=138.2
Q ss_pred CCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCC-ccCCCCccEEeeccccCcCcCchhhccCCCCCccE
Q 005813 264 SCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPE-VALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEI 342 (676)
Q Consensus 264 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 342 (676)
.+++++|+++++. +..+|..+..+++|++|++++|. +..+|. +..+++|++|++++|. ++.+|..+ ..+++|+.
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCE
T ss_pred ccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCE
Confidence 4789999998865 56788888889999999999875 456765 4558899999999987 66777765 67888888
Q ss_pred EeecccccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhc
Q 005813 343 LHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLES 422 (676)
Q Consensus 343 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 422 (676)
|++++|+....++.. +....+.+ .+..+
T Consensus 155 L~L~~n~~~~~~p~~-----~~~~~~~~------------------~~~~l----------------------------- 182 (328)
T 4fcg_A 155 LSIRACPELTELPEP-----LASTDASG------------------EHQGL----------------------------- 182 (328)
T ss_dssp EEEEEETTCCCCCSC-----SEEEC-CC------------------CEEES-----------------------------
T ss_pred EECCCCCCccccChh-----Hhhccchh------------------hhccC-----------------------------
Confidence 888887655554421 11111000 00011
Q ss_pred cccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCC
Q 005813 423 LEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLT 502 (676)
Q Consensus 423 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 502 (676)
++|++|++++|. +..+|..+..+++|++|++++| .+..+|..+..+++|+.|++++|.....+|..+..++
T Consensus 183 -------~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 183 -------VNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp -------TTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred -------CCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 334444444432 2234444555555555555555 3444444455555555555555555555555555555
Q ss_pred CccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 503 SLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 503 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
+|++|++++|.....+|..++.+++|++|++++|+.....+ ..+.++++|+.+.+..+
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP----~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP----SLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC----GGGGGSCTTCEEECCGG
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc----HHHhhccCceEEeCCHH
Confidence 56666665555555555455555555555555555544443 23566666666666554
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=8.7e-19 Score=179.11 Aligned_cols=196 Identities=23% Similarity=0.339 Sum_probs=107.1
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCccccccccc---------C
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLH---------N 500 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---------~ 500 (676)
++|++|++++|... .+|..+..+++|++|++++| .+..+|..+..+++|+.|++++|+....+|..+. +
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 45666666655433 45555556666666666665 3445555555566666666666655555554433 2
Q ss_pred CCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccC
Q 005813 501 LTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGT 580 (676)
Q Consensus 501 l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~ 580 (676)
+++|++|++++|. +..+|..++.+++|++|++++|.....+. .+.++++|+.|++++| .....++..
T Consensus 182 l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-----~l~~l~~L~~L~Ls~n-~~~~~~p~~------ 248 (328)
T 4fcg_A 182 LVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGP-----AIHHLPKLEELDLRGC-TALRNYPPI------ 248 (328)
T ss_dssp STTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCG-----GGGGCTTCCEEECTTC-TTCCBCCCC------
T ss_pred CCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCch-----hhccCCCCCEEECcCC-cchhhhHHH------
Confidence 5666666666653 33555555556666666666665543222 3555666666666663 122333322
Q ss_pred CCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCC-ccccceeeec
Q 005813 581 TLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGL-PSSLLRLYIV 641 (676)
Q Consensus 581 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l-~~~L~~L~i~ 641 (676)
+..+++|+.|++++|+.+..+|..+..+++|++|++++|+.+..+|...- .++|+.+.+.
T Consensus 249 -~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 249 -FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp -TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred -hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 22335666666666555555665566666666666666655555554211 4455555544
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=3e-19 Score=181.48 Aligned_cols=201 Identities=12% Similarity=0.084 Sum_probs=128.3
Q ss_pred CcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCC-Cccceee
Q 005813 431 SLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLT-SLQQLTI 509 (676)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l 509 (676)
+|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+..++ +|+.|++
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 444444444433334444555666666666666633334555556666666666666654445566666665 6777777
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCcc
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLT 589 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~ 589 (676)
++|......+..+..++ |++|++++|......+ ..+..+++|+.|++++| .+...... +..+++|+
T Consensus 182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~-------~~~l~~L~ 247 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS----VLFGSDKNTQKIHLAKN--SLAFDLGK-------VGLSKNLN 247 (313)
T ss_dssp CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG----GGCCTTSCCSEEECCSS--EECCBGGG-------CCCCTTCC
T ss_pred cCCeeeccCChHHhCCc-ccEEECcCCcccCcCC----HHHhcCCCCCEEECCCC--ceeeecCc-------ccccCCCC
Confidence 76654434454555554 7777777776655444 34677888888888887 55433222 22457888
Q ss_pred EEeecCCCCcc-cchhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCChhh
Q 005813 590 SLGISNFPNLE-RLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCPLI 646 (676)
Q Consensus 590 ~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~~l 646 (676)
.|++++ +.+. .+|..+..+++|++|++++|+--..+|..+-.++|+.+++.+||.+
T Consensus 248 ~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 248 GLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred EEECcC-CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 888888 5565 6777888889999999998843336776544688888888888854
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=3.8e-20 Score=199.46 Aligned_cols=356 Identities=18% Similarity=0.180 Sum_probs=191.3
Q ss_pred CCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCC----cceEEEecCCC
Q 005813 201 PRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSC----RLEYLRLSECK 276 (676)
Q Consensus 201 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~----~L~~L~l~~~~ 276 (676)
..+++|+.|++++|......+......+..+++|++|+++++ .+.+.. ...+...++ +|++|++++|.
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~-------~~~l~~~l~~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVG-------VHCVLQGLQTPSCKIQKLSLQNCC 96 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHH-------HHHHHHTTCSTTCCCCEEECTTSC
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHH-------HHHHHHHHhhCCCceeEEEccCCC
Confidence 357899999999998654322233456677899999999995 454422 222222234 79999999986
Q ss_pred Ccc----cccccccCCCCCceEeecCCCCCCCCCC-------ccCCCCccEEeeccccCcCcC-----chhhccCCCCCc
Q 005813 277 GLV----KLPQSSLSLSSLREIEICSCHSLVSFPE-------VALPSKLRKIEIRYCDALKSL-----PEAWMCDTNSSL 340 (676)
Q Consensus 277 ~l~----~l~~~~~~l~~L~~L~l~~~~~l~~~~~-------~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~L 340 (676)
... .++..+..+++|++|++++|. +..... ....++|++|++++|. ++.. +..+ ..+++|
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L 172 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVL--RAKPDF 172 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH--HHCTTC
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHH--hhCCCC
Confidence 442 457788899999999999976 432111 1124579999999997 5542 2222 457899
Q ss_pred cEEeecccccccccccccC-------CCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccC
Q 005813 341 EILHIYGCRSLTYIAAVQV-------PSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSK 413 (676)
Q Consensus 341 ~~L~l~~c~~l~~~~~~~~-------~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 413 (676)
++|+++++. ++......+ .++|+.|++++|. +.....
T Consensus 173 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~---------------------------------- 216 (461)
T 1z7x_W 173 KELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNC---------------------------------- 216 (461)
T ss_dssp CEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHH----------------------------------
T ss_pred CEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHH----------------------------------
Confidence 999999854 544332211 2357777776652 222100
Q ss_pred CCcchhhhccccCCCCCCcceEEEcCCCChhh----H-HHhhccCCccceeeccCCCCccc-----cCCCCCCCCCccEE
Q 005813 414 NELPATLESLEVGNLPPSLKSIRVGGCSKLES----I-AERLDNNTSLETISIDSCKNLVS-----FPEGGLPCAKLRTL 483 (676)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~-~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L 483 (676)
..++..+.. .++|++|++++|...+. + +.....+++|++|++++| .++. ++..+..+++|+.|
T Consensus 217 ~~l~~~l~~------~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 217 RDLCGIVAS------KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp HHHHHHHHH------CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHh------CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceE
Confidence 000000110 14455555555432221 1 111223556666666665 3333 23333345566666
Q ss_pred EeecCcCcccccccc-----cCCCCccceeeeccCCCCC----CCcCCCCCCccceeeccCcchhhhhhhhcccccc-cc
Q 005813 484 AISNCKRLEALPKGL-----HNLTSLQQLTIGIGGALPS----LEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFH-RF 553 (676)
Q Consensus 484 ~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~l 553 (676)
++++|......+..+ ...++|++|++++|..-.. ++..+..+++|++|++++|.............+. ..
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 666554221111111 1234666666666542211 1222334567777777777655443321001122 25
Q ss_pred ccccEEEEecCCCccc-----ccccccccccCCCCCCCCccEEeecCCCCcccc-----hhhc-CCCCCccEEEeCCCC
Q 005813 554 SSLRRLTISRCDDDMV-----SFPLEDKRLGTTLPLPASLTSLGISNFPNLERL-----SSSI-VDLQNLTELYLADCP 621 (676)
Q Consensus 554 ~~L~~L~l~~n~~~l~-----~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~-~~~~~L~~L~l~~c~ 621 (676)
++|+.|++++| .+. .++.... ..++|+.|++++ +.+... ...+ ....+|+.|.+.++.
T Consensus 370 ~~L~~L~L~~n--~i~~~~~~~l~~~l~-------~~~~L~~L~l~~-N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 370 SVLRVLWLADC--DVSDSSCSSLAATLL-------ANHSLRELDLSN-NCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CCCCEEECTTS--CCCHHHHHHHHHHHH-------HCCCCCEEECCS-SSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred CceEEEECCCC--CCChhhHHHHHHHHH-------hCCCccEEECCC-CCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 67777777776 444 2332221 236777777777 344432 1122 234467777777663
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1.1e-18 Score=177.20 Aligned_cols=158 Identities=16% Similarity=0.081 Sum_probs=80.7
Q ss_pred cCCccceeeccCCCCccccCCCCCCCC-CccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccce
Q 005813 452 NNTSLETISIDSCKNLVSFPEGGLPCA-KLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQS 530 (676)
Q Consensus 452 ~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 530 (676)
.+++|++|++++|.....+|..+..++ +|+.|++++|.....+|..+..++ |++|++++|......+..+..+++|++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 344444444444422213333333333 444444444433333344444443 555555554333333444455555566
Q ss_pred eeccCcchhhhhhhhccccccccccccEEEEecCCCccc-ccccccccccCCCCCCCCccEEeecCCCCcc-cchhhcCC
Q 005813 531 LNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMV-SFPLEDKRLGTTLPLPASLTSLGISNFPNLE-RLSSSIVD 608 (676)
Q Consensus 531 L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~-~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~ 608 (676)
|++++|......+ .+..+++|+.|++++| .+. .++..... +++|+.|++++ +.+. .+|. ...
T Consensus 226 L~L~~N~l~~~~~-----~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~-------l~~L~~L~Ls~-N~l~~~ip~-~~~ 289 (313)
T 1ogq_A 226 IHLAKNSLAFDLG-----KVGLSKNLNGLDLRNN--RIYGTLPQGLTQ-------LKFLHSLNVSF-NNLCGEIPQ-GGN 289 (313)
T ss_dssp EECCSSEECCBGG-----GCCCCTTCCEEECCSS--CCEECCCGGGGG-------CTTCCEEECCS-SEEEEECCC-STT
T ss_pred EECCCCceeeecC-----cccccCCCCEEECcCC--cccCcCChHHhc-------CcCCCEEECcC-CcccccCCC-Ccc
Confidence 6665555543322 2455667777777776 554 34433322 36777777777 4554 5554 367
Q ss_pred CCCccEEEeCCCCCcccc
Q 005813 609 LQNLTELYLADCPKLKYF 626 (676)
Q Consensus 609 ~~~L~~L~l~~c~~l~~i 626 (676)
+++|+.+++++|+.+...
T Consensus 290 l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGGSCGGGTCSSSEEEST
T ss_pred ccccChHHhcCCCCccCC
Confidence 788888888888755543
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=4.8e-17 Score=179.01 Aligned_cols=256 Identities=30% Similarity=0.397 Sum_probs=143.8
Q ss_pred CcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCCCCCccEEe
Q 005813 265 CRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILH 344 (676)
Q Consensus 265 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 344 (676)
.+++.|+++++. ++.+|..+. ++|++|++++|. ++.+|. .+++|++|++++|. ++.+|. .+++|+.|+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 347777777654 556665544 677777777753 556665 46777777777776 665553 456777777
Q ss_pred ecccccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccc
Q 005813 345 IYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLE 424 (676)
Q Consensus 345 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 424 (676)
+++ +.++.++. .+++|+.|+++++ .++.++. .+
T Consensus 108 Ls~-N~l~~l~~--~l~~L~~L~L~~N-~l~~lp~------------~l------------------------------- 140 (622)
T 3g06_A 108 IFS-NPLTHLPA--LPSGLCKLWIFGN-QLTSLPV------------LP------------------------------- 140 (622)
T ss_dssp ECS-CCCCCCCC--CCTTCCEEECCSS-CCSCCCC------------CC-------------------------------
T ss_pred CcC-CcCCCCCC--CCCCcCEEECCCC-CCCcCCC------------CC-------------------------------
Confidence 776 34555544 3445666666553 2333330 01
Q ss_pred cCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCc
Q 005813 425 VGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSL 504 (676)
Q Consensus 425 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 504 (676)
++|++|++++|. +..++. .+++|+.|++++| .++.+| ..+++|+.|++++|. +..+|. .+++|
T Consensus 141 -----~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~---~~~~L 203 (622)
T 3g06_A 141 -----PGLQELSVSDNQ-LASLPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPT---LPSEL 203 (622)
T ss_dssp -----TTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTC
T ss_pred -----CCCCEEECcCCc-CCCcCC---ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCC---ccchh
Confidence 334444444432 112221 2345555555555 344444 224556666666543 333332 23556
Q ss_pred cceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCC
Q 005813 505 QQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPL 584 (676)
Q Consensus 505 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~ 584 (676)
+.|++++|. +..++ ..+++|++|++++|.....+ ..+++|+.|++++| .+..++. .
T Consensus 204 ~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N--~L~~lp~----------~ 259 (622)
T 3g06_A 204 YKLWAYNNR-LTSLP---ALPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGN--RLTSLPM----------L 259 (622)
T ss_dssp CEEECCSSC-CSSCC---CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSS--CCSCCCC----------C
T ss_pred hEEECcCCc-ccccC---CCCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCC--CCCcCCc----------c
Confidence 666666542 33333 12456666666666544321 34566777777776 6666654 2
Q ss_pred CCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCC
Q 005813 585 PASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 585 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 621 (676)
+++|+.|++++ +.++.+|..+..+++|+.|++++|+
T Consensus 260 ~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 260 PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCC
Confidence 36777777777 5677777777777777777777774
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=1.1e-16 Score=176.04 Aligned_cols=256 Identities=23% Similarity=0.225 Sum_probs=193.2
Q ss_pred CCCceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCCCcCCCCccceEeeecccCceEeCCccCCCCCCCCCCC
Q 005813 6 ENLEQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLPSVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPC 85 (676)
Q Consensus 6 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 85 (676)
.+++.|+++++....+|..++ ++|++|++++| .++.+|. .+++|++|++++|. ++.+|. .+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---------LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---------CCTT
T ss_pred CCCcEEEecCCCcCccChhhC----CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---------CCCC
Confidence 368999999999999998775 79999999996 8889988 68899999999995 888874 3899
Q ss_pred cceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEEEcC
Q 005813 86 LETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFEIGG 165 (676)
Q Consensus 86 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~l~~ 165 (676)
|+.|+++++. +.... . .+++|+.|+++++ .+. .+|..+++|+.|++++|.... ....+++|+.|++.+
T Consensus 103 L~~L~Ls~N~-l~~l~-----~---~l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~ 170 (622)
T 3g06_A 103 LLELSIFSNP-LTHLP-----A---LPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYN 170 (622)
T ss_dssp CCEEEECSCC-CCCCC-----C---CCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred CCEEECcCCc-CCCCC-----C---CCCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCCcCCC-cCCccCCCCEEECCC
Confidence 9999998763 33222 1 5788999999986 455 577778899999998885432 233467888888888
Q ss_pred CCCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCc
Q 005813 166 CKKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKI 245 (676)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 245 (676)
|...... ..+++|+.|++++|.... ++ ...++|+.|++.+| .+
T Consensus 171 N~l~~l~----------------------------~~~~~L~~L~Ls~N~l~~----l~----~~~~~L~~L~L~~N-~l 213 (622)
T 3g06_A 171 NQLTSLP----------------------------MLPSGLQELSVSDNQLAS----LP----TLPSELYKLWAYNN-RL 213 (622)
T ss_dssp SCCSCCC----------------------------CCCTTCCEEECCSSCCSC----CC----CCCTTCCEEECCSS-CC
T ss_pred CCCCCCc----------------------------ccCCCCcEEECCCCCCCC----CC----CccchhhEEECcCC-cc
Confidence 7644321 236788999998876433 22 23578889998885 56
Q ss_pred cccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCc
Q 005813 246 QSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDAL 325 (676)
Q Consensus 246 ~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l 325 (676)
+.++.. +++|+.|++++|. ++.+| ..+++|++|++++| .+..+|. .+++|+.|++++|. +
T Consensus 214 ~~l~~~------------~~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L 273 (622)
T 3g06_A 214 TSLPAL------------PSGLKELIVSGNR-LTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-L 273 (622)
T ss_dssp SSCCCC------------CTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-C
T ss_pred cccCCC------------CCCCCEEEccCCc-cCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-C
Confidence 665542 3788999998874 55566 45678899999886 4667776 67889999998887 7
Q ss_pred CcCchhhccCCCCCccEEeecccc
Q 005813 326 KSLPEAWMCDTNSSLEILHIYGCR 349 (676)
Q Consensus 326 ~~~~~~~~~~~l~~L~~L~l~~c~ 349 (676)
+.+|..+ ..+++|+.|++++++
T Consensus 274 ~~lp~~l--~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 274 TRLPESL--IHLSSETTVNLEGNP 295 (622)
T ss_dssp CSCCGGG--GGSCTTCEEECCSCC
T ss_pred CcCCHHH--hhccccCEEEecCCC
Confidence 7887765 678888888888843
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=9.6e-17 Score=171.39 Aligned_cols=128 Identities=18% Similarity=0.171 Sum_probs=54.3
Q ss_pred CcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 431 SLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
+|++|++++|......+..+..+++|++|++++|..+..++. .+..+++|+.|++++|. +..+| .+..+++|++|++
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-NLTPLIKLDELDL 214 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-CCTTCSSCCEEEC
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-ccCCCcccCEEEC
Confidence 344444444332222223344455555555555444444433 33444555555555543 23333 2344444444444
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
++|......+..+..+++|++|++++|....... ..+.++++|+.|++++|
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER----NAFDNLQSLVEINLAHN 265 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT----TSSTTCTTCCEEECTTS
T ss_pred CCCccCccChhhhccCccCCEEECCCCceeEECh----hhhcCCCCCCEEECCCC
Confidence 4443222223334444444444444444333322 22344444444444444
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=2.5e-17 Score=165.07 Aligned_cols=202 Identities=21% Similarity=0.189 Sum_probs=155.0
Q ss_pred CCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcccc-CCCCCCCCCccEEEeecCcCcccc-cccccCCCCccc
Q 005813 429 PPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSF-PEGGLPCAKLRTLAISNCKRLEAL-PKGLHNLTSLQQ 506 (676)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~ 506 (676)
|+++++|+++++......+..+..+++|++|++++| .++.+ +..+..+++|+.|++++|..+..+ +..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 578888888887655545566788899999999988 45554 557778889999999998755555 557788899999
Q ss_pred eeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCC
Q 005813 507 LTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPA 586 (676)
Q Consensus 507 L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~ 586 (676)
|++++|......+..+..+++|++|++++|....... ..+.++++|+.|++++| .+..++... +..++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~~------~~~l~ 177 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGN--RISSVPERA------FRGLH 177 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCEECTTT------TTTCT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH----hHhccCCCccEEECCCC--cccccCHHH------hcCcc
Confidence 9999876555445567888999999999998765544 34788899999999998 777766532 33458
Q ss_pred CccEEeecCCCCcccc-hhhcCCCCCccEEEeCCCCCccccCCCCC--ccccceeeecCChh
Q 005813 587 SLTSLGISNFPNLERL-SSSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGCPL 645 (676)
Q Consensus 587 ~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~~ 645 (676)
+|+.|++++ +.+..+ +..+..+++|++|++++| .++.++...+ .++|++|++++||.
T Consensus 178 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCEEECCC-CcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 899999999 567666 668888999999999998 6777765333 57899999998874
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=9.5e-17 Score=171.40 Aligned_cols=175 Identities=17% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccc-cccCCCCccce
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQQL 507 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L 507 (676)
++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.|++++|+.+..++. .+.++++|++|
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 34445555444322222223444555555555554 2333332 344445555555555444444333 34445555555
Q ss_pred eeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCC
Q 005813 508 TIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPAS 587 (676)
Q Consensus 508 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~ 587 (676)
++++| .+..++ .+..+++|++|++++|......+ ..+.++++|+.|++++| .+..++... +..+++
T Consensus 191 ~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~------~~~l~~ 256 (440)
T 3zyj_A 191 NLAMC-NLREIP-NLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQS--QIQVIERNA------FDNLQS 256 (440)
T ss_dssp ECTTS-CCSSCC-CCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTC--CCCEECTTS------STTCTT
T ss_pred cCCCC-cCcccc-ccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCC--ceeEEChhh------hcCCCC
Confidence 55544 233333 34444455555555554433322 23444455555555544 443333211 222344
Q ss_pred ccEEeecCCCCcccchh-hcCCCCCccEEEeCCC
Q 005813 588 LTSLGISNFPNLERLSS-SIVDLQNLTELYLADC 620 (676)
Q Consensus 588 L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 620 (676)
|+.|++++ +.++.++. .+..+++|+.|++++|
T Consensus 257 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 257 LVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEECCC-CCCCccChhHhccccCCCEEEcCCC
Confidence 44444444 34444433 3344444444444444
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=9e-17 Score=172.22 Aligned_cols=175 Identities=21% Similarity=0.229 Sum_probs=82.0
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccc-cccCCCCccce
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQQL 507 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L 507 (676)
++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.|++++|+.+..++. .+.++++|++|
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 34555555554433222333445555555555555 3333333 344455555555555554444433 24455555555
Q ss_pred eeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCC
Q 005813 508 TIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPAS 587 (676)
Q Consensus 508 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~ 587 (676)
++++|. +..++ .+..+++|++|++++|......+ ..+.++++|+.|++++| .+..++... +..+++
T Consensus 202 ~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~------~~~l~~ 267 (452)
T 3zyi_A 202 NLGMCN-IKDMP-NLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNS--QVSLIERNA------FDGLAS 267 (452)
T ss_dssp ECTTSC-CSSCC-CCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTS--CCCEECTTT------TTTCTT
T ss_pred ECCCCc-ccccc-cccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCC--cCceECHHH------hcCCCC
Confidence 555542 33333 34445555555555555444333 23455555555555554 444333211 223345
Q ss_pred ccEEeecCCCCcccchh-hcCCCCCccEEEeCCC
Q 005813 588 LTSLGISNFPNLERLSS-SIVDLQNLTELYLADC 620 (676)
Q Consensus 588 L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 620 (676)
|+.|++++ +.++.++. .+..+++|++|++++|
T Consensus 268 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 268 LVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCEEECCC-CcCCccChHHhccccCCCEEEccCC
Confidence 55555555 34444443 3344555555555554
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=5e-17 Score=164.72 Aligned_cols=200 Identities=18% Similarity=0.154 Sum_probs=122.2
Q ss_pred CCcceEEEcCCCChh--hHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCccccc--ccccCCCCcc
Q 005813 430 PSLKSIRVGGCSKLE--SIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALP--KGLHNLTSLQ 505 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 505 (676)
++|++|++++|.... ..+..+..+++|++|++++| .+..++..+..+++|+.|++++|.. ..++ ..+..+++|+
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLI 129 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCC
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCC
Confidence 344555554443221 11233445667777777766 4555555555667777777777543 3332 2456677777
Q ss_pred ceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCC
Q 005813 506 QLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLP 585 (676)
Q Consensus 506 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~ 585 (676)
+|++++|......+..+..+++|++|++++|........ ..+..+++|+.|++++| .+..++... +..+
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l 198 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQC--QLEQLSPTA------FNSL 198 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTS--CCCEECTTT------TTTC
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCCccccccch---hHHhhCcCCCEEECCCC--CcCCcCHHH------hcCC
Confidence 777777654444444566677777777777766542111 24677788888888887 666553321 2344
Q ss_pred CCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCCCccccCCCCC---ccccceeeecCCh
Q 005813 586 ASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCPKLKYFPEKGL---PSSLLRLYIVGCP 644 (676)
Q Consensus 586 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~~~~l---~~~L~~L~i~~c~ 644 (676)
++|+.|++++ +.++.++. .+..+++|++|++++| .++..+...+ +++|++|++++|+
T Consensus 199 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 199 SSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence 7788888887 56666654 6677888888888887 4555444333 3578888888876
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=2.4e-16 Score=168.94 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=122.5
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCcccee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLT 508 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 508 (676)
++|++|++++|......+..+..+++|++|++++|..+..++. .+..+++|+.|++++|. +..+| .+..+++|++|+
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELE 224 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-CCTTCTTCCEEE
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-cccccccccEEE
Confidence 5677777777665444445678899999999999888888776 57778999999999976 45555 578899999999
Q ss_pred eeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCc
Q 005813 509 IGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASL 588 (676)
Q Consensus 509 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L 588 (676)
+++|......+..+..+++|+.|++++|......+ ..+.++++|+.|++++| .+..++... +..+++|
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L 292 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER----NAFDGLASLVELNLAHN--NLSSLPHDL------FTPLRYL 292 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSS--CCSCCCTTS------STTCTTC
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECH----HHhcCCCCCCEEECCCC--cCCccChHH------hccccCC
Confidence 99987655556678899999999999998876655 35889999999999998 888777543 3455899
Q ss_pred cEEeecCC
Q 005813 589 TSLGISNF 596 (676)
Q Consensus 589 ~~L~l~~c 596 (676)
+.|+++++
T Consensus 293 ~~L~L~~N 300 (452)
T 3zyi_A 293 VELHLHHN 300 (452)
T ss_dssp CEEECCSS
T ss_pred CEEEccCC
Confidence 99999983
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.7e-16 Score=164.32 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=65.6
Q ss_pred cCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccc-cccCCCCCceEeecCCCCCCCCCC-
Q 005813 230 DICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQ-SSLSLSSLREIEICSCHSLVSFPE- 307 (676)
Q Consensus 230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~- 307 (676)
.|+.....+.++ ..++.+|.. .+++|++|+++++. ++.++. .+..+++|++|++++|. +..+++
T Consensus 29 ~C~~~~~c~~~~-~~l~~iP~~-----------~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 94 (353)
T 2z80_A 29 SCDRNGICKGSS-GSLNSIPSG-----------LTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INTIEED 94 (353)
T ss_dssp EECTTSEEECCS-TTCSSCCTT-----------CCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTT
T ss_pred CCCCCeEeeCCC-CCccccccc-----------ccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCc-cCccCHh
Confidence 334444455554 356666543 23678888888765 444443 67788888888888764 454443
Q ss_pred -ccCCCCccEEeeccccCcCcCchhhccCCCCCccEEeecc
Q 005813 308 -VALPSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYG 347 (676)
Q Consensus 308 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 347 (676)
+..+++|++|++++|. ++.++...+ ..+++|++|++++
T Consensus 95 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~ 133 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTFLNLLG 133 (353)
T ss_dssp TTTTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSEEECTT
T ss_pred hcCCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCEEECCC
Confidence 4447788888888876 666666533 6677778877776
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.1e-16 Score=162.25 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=16.7
Q ss_pred CcceEEEecCCCCcccccc-cccCCCCCceEeecCC
Q 005813 265 CRLEYLRLSECKGLVKLPQ-SSLSLSSLREIEICSC 299 (676)
Q Consensus 265 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~ 299 (676)
++|++|+++++. ++.+|. .+..+++|++|++++|
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n 62 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN 62 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCC
Confidence 455555555543 333333 2455555555555554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=1.5e-17 Score=169.35 Aligned_cols=157 Identities=10% Similarity=0.083 Sum_probs=93.6
Q ss_pred CccceeeccCCCCcccc-CCCCCCCCCccEEEeecCcCcccccccc-cCCCCccceeeeccCCCCCCCcCCCCCCcccee
Q 005813 454 TSLETISIDSCKNLVSF-PEGGLPCAKLRTLAISNCKRLEALPKGL-HNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSL 531 (676)
Q Consensus 454 ~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 531 (676)
++|++|++++| .++.+ +..+..+++|+.|++++|......+..+ ..+++|++|++++|. +..++ ....+++|++|
T Consensus 120 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~l~~L~~L 196 (317)
T 3o53_A 120 QGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK-GQVVFAKLKTL 196 (317)
T ss_dssp SSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE-CCCCCTTCCEE
T ss_pred CCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc-cccccccCCEE
Confidence 34444444444 22222 2233444555555555544332222233 345666666666654 33333 23346777777
Q ss_pred eccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcc--cchhhcCCC
Q 005813 532 NIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLE--RLSSSIVDL 609 (676)
Q Consensus 532 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~ 609 (676)
++++|....... .+..+++|+.|++++| .+..++... ..+++|+.|++++ +.+. .++..+..+
T Consensus 197 ~Ls~N~l~~l~~-----~~~~l~~L~~L~L~~N--~l~~l~~~~-------~~l~~L~~L~l~~-N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 197 DLSSNKLAFMGP-----EFQSAAGVTWISLRNN--KLVLIEKAL-------RFSQNLEHFDLRG-NGFHCGTLRDFFSKN 261 (317)
T ss_dssp ECCSSCCCEECG-----GGGGGTTCSEEECTTS--CCCEECTTC-------CCCTTCCEEECTT-CCCBHHHHHHHHHTC
T ss_pred ECCCCcCCcchh-----hhcccCcccEEECcCC--cccchhhHh-------hcCCCCCEEEccC-CCccCcCHHHHHhcc
Confidence 777776655433 3677888888888887 777766533 2447888888888 4554 566677888
Q ss_pred CCccEEEeCCCCCccccCC
Q 005813 610 QNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 610 ~~L~~L~l~~c~~l~~i~~ 628 (676)
++|+.+++++|..++..+.
T Consensus 262 ~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSS
T ss_pred ccceEEECCCchhccCCch
Confidence 8888888887766665433
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=8.2e-16 Score=153.99 Aligned_cols=161 Identities=23% Similarity=0.230 Sum_probs=100.3
Q ss_pred HhhccCCccceeeccCCCCcccc-CCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCC
Q 005813 448 ERLDNNTSLETISIDSCKNLVSF-PEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPT 526 (676)
Q Consensus 448 ~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 526 (676)
..+..+++|++|++++|..++.+ +..+..+++|+.|++++|......+..+..+++|++|++++|......+..+..++
T Consensus 74 ~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 153 (285)
T 1ozn_A 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153 (285)
T ss_dssp TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC
Confidence 34455666666666666434444 33455566666666666554433344556666777777776543332233356677
Q ss_pred ccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-h
Q 005813 527 NLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-S 605 (676)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~ 605 (676)
+|++|++++|....... ..+.++++|+.|++++| .+..+... .+..+++|+.|++++ +.++.++. .
T Consensus 154 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~------~~~~l~~L~~L~l~~-n~l~~~~~~~ 220 (285)
T 1ozn_A 154 NLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQN--RVAHVHPH------AFRDLGRLMTLYLFA-NNLSALPTEA 220 (285)
T ss_dssp TCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS--CCCEECTT------TTTTCTTCCEEECCS-SCCSCCCHHH
T ss_pred CccEEECCCCcccccCH----HHhcCccccCEEECCCC--cccccCHh------HccCcccccEeeCCC-CcCCcCCHHH
Confidence 77777777776554433 24677788888888887 56555322 133447788888888 56776664 5
Q ss_pred cCCCCCccEEEeCCCC
Q 005813 606 IVDLQNLTELYLADCP 621 (676)
Q Consensus 606 ~~~~~~L~~L~l~~c~ 621 (676)
+..+++|++|++++|+
T Consensus 221 ~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNP 236 (285)
T ss_dssp HTTCTTCCEEECCSSC
T ss_pred cccCcccCEEeccCCC
Confidence 7788888888888875
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=2.9e-16 Score=152.82 Aligned_cols=201 Identities=15% Similarity=0.123 Sum_probs=160.6
Q ss_pred CCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCccccc-ccccCCCCccc
Q 005813 429 PPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALP-KGLHNLTSLQQ 506 (676)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~ 506 (676)
|++++.|+++++......+..+..+++|++|++++|..++.++. .+..+++|+.|++++|+.+..++ ..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 57899999999765444455788899999999999965777765 67789999999999955566665 46789999999
Q ss_pred eeeeccCCCCCCCcCCCCCCccc---eeeccCc-chhhhhhhhcccccccccccc-EEEEecCCCcccccccccccccCC
Q 005813 507 LTIGIGGALPSLEEEDDLPTNLQ---SLNIWGN-MEIWKSMIERGRGFHRFSSLR-RLTISRCDDDMVSFPLEDKRLGTT 581 (676)
Q Consensus 507 L~l~~c~~l~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~l~~l~~L~-~L~l~~n~~~l~~i~~~~~~l~~~ 581 (676)
|++++|. +..++. +..+++|+ +|++++| ....... ..+.++++|+ .|++++| .+..++...
T Consensus 110 L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----~~~~~l~~L~~~L~l~~n--~l~~i~~~~------ 175 (239)
T 2xwt_C 110 LGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV----NAFQGLCNETLTLKLYNN--GFTSVQGYA------ 175 (239)
T ss_dssp EEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT----TTTTTTBSSEEEEECCSC--CCCEECTTT------
T ss_pred EeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCc----ccccchhcceeEEEcCCC--CCcccCHhh------
Confidence 9999985 555774 78888888 9999999 5554433 3588999999 9999998 788887643
Q ss_pred CCCCCCccEEeecCCCCcccchh-hcCCC-CCccEEEeCCCCCccccCCCCCccccceeeecCChhh
Q 005813 582 LPLPASLTSLGISNFPNLERLSS-SIVDL-QNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCPLI 646 (676)
Q Consensus 582 ~~~~~~L~~L~l~~c~~l~~l~~-~~~~~-~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~~l 646 (676)
+.. ++|+.|+++++..++.++. .+..+ ++|++|++++| .++.+|.. ..++|+.|++++++.+
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 223 7899999999546988865 67888 99999999997 68899876 4589999999998753
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=6.2e-17 Score=164.74 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCcceEEEcCCCChhhHHHhh-ccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCcccee
Q 005813 430 PSLKSIRVGGCSKLESIAERL-DNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLT 508 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 508 (676)
++|++|++++|......+..+ ..+++|++|++++| .++.++... .+++|+.|++++|. +..++..+..+++|+.|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc-ccccCCEEECCCCc-CCcchhhhcccCcccEEE
Confidence 456666666655444333333 46788888888887 455554432 47788888888865 455666677788888888
Q ss_pred eeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEec
Q 005813 509 IGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISR 563 (676)
Q Consensus 509 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 563 (676)
+++|. +..++..+..+++|+.|++++|+....... ..+..+++|+.|++++
T Consensus 221 L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~---~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 221 LRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHH---HHHHTCHHHHHHHHHH
T ss_pred CcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHH---HHHhccccceEEECCC
Confidence 88864 455666677778888888888877632222 2356667777766665
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=5.6e-16 Score=154.40 Aligned_cols=201 Identities=18% Similarity=0.176 Sum_probs=140.0
Q ss_pred CCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCccce
Q 005813 429 PPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQL 507 (676)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 507 (676)
|+++++|+++++......+..+..+++|++|++++| .+..++. .+..+++|+.|++++|......+..+..+++|++|
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 567888888887654444446777888888888888 4555544 56778888888888876444444567788888888
Q ss_pred eeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccc-ccccCCCCCCC
Q 005813 508 TIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLED-KRLGTTLPLPA 586 (676)
Q Consensus 508 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~-~~l~~~~~~~~ 586 (676)
++++|......+..++.+++|++|++++|.......+ ..+.++++|+.|++++| .+..++... ..+ +
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~---~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l-------~ 173 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSN--KIQSIYCTDLRVL-------H 173 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC---GGGGGCTTCCEEECCSS--CCCEECGGGGHHH-------H
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCc---hhhccCCCCCEEECCCC--CCCcCCHHHhhhh-------h
Confidence 8888754433333577788888888888876653211 25778888888888887 676665432 112 3
Q ss_pred Ccc----EEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCC--ccccceeeecCCh
Q 005813 587 SLT----SLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGCP 644 (676)
Q Consensus 587 ~L~----~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~ 644 (676)
+|+ .|++++ +.++.++.......+|++|++++| .++.++...+ .++|++|++++||
T Consensus 174 ~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 174 QMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 444 788888 677777766556668888888887 5777776543 5788888888543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=3.6e-15 Score=147.90 Aligned_cols=174 Identities=25% Similarity=0.265 Sum_probs=74.1
Q ss_pred ccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccc-cccCCCCccceeeeccCCCCCCCcCCCCCCccceee
Q 005813 455 SLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLN 532 (676)
Q Consensus 455 ~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 532 (676)
++++|++++| .+..++. .+..+++|+.|++++|. +..++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus 38 ~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 38 DTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 3444444444 2333322 33344444444444433 222222 223444444444444332221122234444455555
Q ss_pred ccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCC
Q 005813 533 IWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQN 611 (676)
Q Consensus 533 l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~ 611 (676)
+++|......+ ..+.++++|+.|++++| .+..++... +..+++|+.|++++ +.++.++. .+..+++
T Consensus 116 l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 116 LDRNQLKSLPP----RVFDSLTKLTYLSLGYN--ELQSLPKGV------FDKLTSLKELRLYN-NQLKRVPEGAFDKLTE 182 (270)
T ss_dssp CCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred CCCCccCeeCH----HHhCcCcCCCEEECCCC--cCCccCHhH------ccCCcccceeEecC-CcCcEeChhHhccCCC
Confidence 55444433322 22444555555555554 444443321 22234555555555 34444443 3445555
Q ss_pred ccEEEeCCCCCccccCCCCC--ccccceeeecCCh
Q 005813 612 LTELYLADCPKLKYFPEKGL--PSSLLRLYIVGCP 644 (676)
Q Consensus 612 L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~ 644 (676)
|++|++++| .++.++...+ .++|+.|++++||
T Consensus 183 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 183 LKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 555555554 3444444322 3455555555544
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1.3e-15 Score=164.27 Aligned_cols=244 Identities=15% Similarity=0.141 Sum_probs=157.1
Q ss_pred HHHHhhcCCcceEEEecCCCCcccccccccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccCcCcCchhhccCC
Q 005813 257 QQQLCELSCRLEYLRLSECKGLVKLPQSSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDALKSLPEAWMCDT 336 (676)
Q Consensus 257 l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 336 (676)
+..+...+++|++|++++|......|..+..+++|++|++++|. +...++...+++|++|++++|. ++.++.
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~------ 97 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV------ 97 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEE------
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCC------
Confidence 33333344688888888875444445677888888888888865 4444445667888888888876 555442
Q ss_pred CCCccEEeecccccccccccccCCCCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCc
Q 005813 337 NSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNEL 416 (676)
Q Consensus 337 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 416 (676)
.++|+.|++++ +.++.++...+ ++|+.|+++++. +..++ + .
T Consensus 98 ~~~L~~L~L~~-N~l~~~~~~~l-~~L~~L~L~~N~-l~~~~---------------------------------~-~-- 138 (487)
T 3oja_A 98 GPSIETLHAAN-NNISRVSCSRG-QGKKNIYLANNK-ITMLR---------------------------------D-L-- 138 (487)
T ss_dssp CTTCCEEECCS-SCCCCEEECCC-SSCEEEECCSSC-CCSGG---------------------------------G-B--
T ss_pred CCCcCEEECcC-CcCCCCCcccc-CCCCEEECCCCC-CCCCC---------------------------------c-h--
Confidence 26677777777 34554444332 235555555432 21111 0 0
Q ss_pred chhhhccccCCCCCCcceEEEcCCCChhhHHHhhc-cCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCccccc
Q 005813 417 PATLESLEVGNLPPSLKSIRVGGCSKLESIAERLD-NNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALP 495 (676)
Q Consensus 417 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 495 (676)
.+.. .++|+.|++++|......+..+. .+++|++|++++| .++.++.. ..+++|+.|++++|. +..+|
T Consensus 139 --~~~~------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~~~ 207 (487)
T 3oja_A 139 --DEGC------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNK-LAFMG 207 (487)
T ss_dssp --CGGG------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSC-CCEEC
T ss_pred --hhcC------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc-ccCCCCCEEECCCCC-CCCCC
Confidence 0000 25778888887765555555554 6889999999988 46655543 347889999999865 55566
Q ss_pred ccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEe
Q 005813 496 KGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTIS 562 (676)
Q Consensus 496 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 562 (676)
..+..+++|+.|++++|. +..+|..+..+++|+.|++++|+......+. .+..++.|+.+.+.
T Consensus 208 ~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~---~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRD---FFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHH---HHTTCHHHHHHHHH
T ss_pred HhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHH---HHHhCCCCcEEecc
Confidence 668888899999999864 4556767778888999999888876332222 35667777766665
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=6.5e-15 Score=147.41 Aligned_cols=177 Identities=18% Similarity=0.141 Sum_probs=135.9
Q ss_pred CCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCcccee
Q 005813 429 PPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLT 508 (676)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 508 (676)
|++++.|++++|......+..+..+++|++|++++| .++.++.. ..+++|+.|++++|. +..+|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEE
Confidence 478899999988765555677888999999999988 56666554 678899999999865 557777778888999999
Q ss_pred eeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCc
Q 005813 509 IGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASL 588 (676)
Q Consensus 509 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L 588 (676)
+++|..-...+..+..+++|++|++++|....... ..+..+++|+.|++++| .+..++... +..+++|
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~l~~~~------~~~l~~L 174 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLANN--NLTELPAGL------LNGLENL 174 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTTS--CCSCCCTTT------TTTCTTC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh----hhcccccCCCEEECCCC--cCCccCHHH------hcCcCCC
Confidence 98875443333557788888888888887765544 34678888888888887 777777543 3345788
Q ss_pred cEEeecCCCCcccchhhcCCCCCccEEEeCCCC
Q 005813 589 TSLGISNFPNLERLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 589 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 621 (676)
+.|++++ +.++.+|..+...++|+.|++++|+
T Consensus 175 ~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 175 DTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 8888888 6788888877788888888888775
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=7.4e-16 Score=156.37 Aligned_cols=202 Identities=16% Similarity=0.127 Sum_probs=122.2
Q ss_pred CCcceEEEcCCCChhhHHHhh--ccCCccceeeccCCCCccccCCCCCCC-----CCccEEEeecCcCcccccccccCCC
Q 005813 430 PSLKSIRVGGCSKLESIAERL--DNNTSLETISIDSCKNLVSFPEGGLPC-----AKLRTLAISNCKRLEALPKGLHNLT 502 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~l~ 502 (676)
++|++|++++|......|..+ ..+++|++|++++| .++..|..+..+ ++|+.|++++|......+..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 345555555544333344333 55666777777666 344444433333 6777777777654443345666777
Q ss_pred CccceeeeccCCCCC--CCcC--CCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccc
Q 005813 503 SLQQLTIGIGGALPS--LEEE--DDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRL 578 (676)
Q Consensus 503 ~L~~L~l~~c~~l~~--~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l 578 (676)
+|++|++++|..... .+.. ++.+++|++|++++|......... ...+.++++|+.|++++| .+...+..
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N--~l~~~~~~---- 246 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC-SALAAARVQLQGLDLSHN--SLRDAAGA---- 246 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH-HHHHHTTCCCSEEECTTS--CCCSSCCC----
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH-HHHHhcCCCCCEEECCCC--cCCcccch----
Confidence 777777777653321 1112 256777788888777665322110 013457788888888887 66554311
Q ss_pred cCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCCh
Q 005813 579 GTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCP 644 (676)
Q Consensus 579 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~ 644 (676)
..+..+++|+.|++++ +.++.+|..+. ++|++|++++| +++.+|...-.++|++|++++|+
T Consensus 247 -~~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 247 -PSCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -SCCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred -hhhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 1122357888888888 67778876555 78888888887 67777663336788888888876
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=6e-15 Score=147.65 Aligned_cols=195 Identities=20% Similarity=0.255 Sum_probs=157.8
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCcccc-CCCCCCCCCccEEEeecCcCcccccccccCCCCcccee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSF-PEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLT 508 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 508 (676)
++++.++++++ .++.+|..+ .++++.|++++|. +..+ +..+..+++|+.|++++|. +..++.. ..+++|++|+
T Consensus 10 ~~l~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKR-NLTALPPDL--PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTS-CCSSCCSCC--CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEE
T ss_pred CCccEEECCCC-CCCcCCCCC--CCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEE
Confidence 56888888774 355565444 4789999999995 5544 4567889999999999976 5555443 7899999999
Q ss_pred eeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCc
Q 005813 509 IGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASL 588 (676)
Q Consensus 509 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L 588 (676)
+++| .+..++..+..+++|++|++++|......+ ..+.++++|+.|++++| .+..++... +..+++|
T Consensus 84 Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L 150 (290)
T 1p9a_G 84 LSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGN--ELKTLPPGL------LTPTPKL 150 (290)
T ss_dssp CCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTS--CCCCCCTTT------TTTCTTC
T ss_pred CCCC-cCCcCchhhccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCC--CCCccChhh------cccccCC
Confidence 9997 466778778899999999999998876654 45889999999999998 888877643 3456899
Q ss_pred cEEeecCCCCcccchh-hcCCCCCccEEEeCCCCCccccCCCCC-ccccceeeecCChh
Q 005813 589 TSLGISNFPNLERLSS-SIVDLQNLTELYLADCPKLKYFPEKGL-PSSLLRLYIVGCPL 645 (676)
Q Consensus 589 ~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~~~~l-~~~L~~L~i~~c~~ 645 (676)
+.|++++ +.++.+|. .+..+++|++|++++| .++.+|.... .++|+.+++.+||.
T Consensus 151 ~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 151 EKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CEEECCC-CcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 9999999 78999987 5678999999999998 7889988544 57899999998874
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.1e-14 Score=144.32 Aligned_cols=179 Identities=19% Similarity=0.195 Sum_probs=143.2
Q ss_pred CCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCC-CCCCCCccEEEeecCcCcccccccccCCCCccce
Q 005813 429 PPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEG-GLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQL 507 (676)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 507 (676)
|++++.|+++++......+..+..+++|++|++++| .++.++.. +..+++|+.|++++|......+..+..+++|++|
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 578999999987655444557888999999999998 56666654 5679999999999977443333456889999999
Q ss_pred eeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCC
Q 005813 508 TIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPAS 587 (676)
Q Consensus 508 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~ 587 (676)
++++|......+..+..+++|++|++++|....... ..+..+++|+.|++++| .+..++... +..+++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~------~~~l~~ 182 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRLYNN--QLKRVPEGA------FDKLTE 182 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCSCCCTTT------TTTCTT
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEecCC--cCcEeChhH------hccCCC
Confidence 999976544444457889999999999998776544 34789999999999998 788777532 335589
Q ss_pred ccEEeecCCCCcccchh-hcCCCCCccEEEeCCCC
Q 005813 588 LTSLGISNFPNLERLSS-SIVDLQNLTELYLADCP 621 (676)
Q Consensus 588 L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 621 (676)
|+.|++++ +.++.++. .+..+++|+.|++++|+
T Consensus 183 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 183 LKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 99999999 68888876 57889999999999986
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=4e-15 Score=160.40 Aligned_cols=190 Identities=13% Similarity=0.108 Sum_probs=110.7
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++|++|++++|......+ +..+++|++|++++| .++.++. .++|+.|++++|... .++. ..+++|+.|++
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~~N~l~-~~~~--~~l~~L~~L~L 127 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANNNIS-RVSC--SRGQGKKNIYL 127 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECCSSCCC-CEEE--CCCSSCEEEEC
T ss_pred CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEECcCCcCC-CCCc--cccCCCCEEEC
Confidence 466666666655433222 556667777777666 4444432 256677777665432 2222 24566777777
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccc-cccccccEEEEecCCCcccccccccccccCCCCCCCCc
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGF-HRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASL 588 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L 588 (676)
++|......+..++.+++|++|++++|......+. .+ ..+++|+.|++++| .+..++... .+++|
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~L~Ls~N--~l~~~~~~~--------~l~~L 193 (487)
T 3oja_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYN--FIYDVKGQV--------VFAKL 193 (487)
T ss_dssp CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTS--CCCEEECCC--------CCTTC
T ss_pred CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccEEecCCC--ccccccccc--------cCCCC
Confidence 66554333344456666777777777766554332 23 35667777777776 555554322 34667
Q ss_pred cEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCC-CccccceeeecCChh
Q 005813 589 TSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKG-LPSSLLRLYIVGCPL 645 (676)
Q Consensus 589 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~-l~~~L~~L~i~~c~~ 645 (676)
+.|++++ +.++.+|..+..+++|+.|++++| .++.+|... ..++|+.|++++|+.
T Consensus 194 ~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 194 KTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 7777776 566666666666677777777776 466665531 146677777776653
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=7.9e-15 Score=142.64 Aligned_cols=175 Identities=19% Similarity=0.188 Sum_probs=126.3
Q ss_pred CCcceEEEcCCCChhhHH-HhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCcc--
Q 005813 430 PSLKSIRVGGCSKLESIA-ERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQ-- 505 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-- 505 (676)
++|++|++++|..++.++ ..+..+++|++|++++|..++.++. .+..+++|+.|++++|. +..+|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccc
Confidence 567777777665343333 3567788888888888446777664 56678889999998876 455665 77777777
Q ss_pred -ceeeeccCCCCCCCc-CCCCCCccc-eeeccCcchhhhhhhhccccccccccccEEEEecCCCc-ccccccccccccCC
Q 005813 506 -QLTIGIGGALPSLEE-EDDLPTNLQ-SLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDD-MVSFPLEDKRLGTT 581 (676)
Q Consensus 506 -~L~l~~c~~l~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-l~~i~~~~~~l~~~ 581 (676)
+|++++|+.+..++. .+..+++|+ +|++++|.....+. ..+.. ++|+.|++++| . +..++...
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----~~~~~-~~L~~L~L~~n--~~l~~i~~~~------ 199 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----YAFNG-TKLDAVYLNKN--KYLTVIDKDA------ 199 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----TTTTT-CEEEEEECTTC--TTCCEECTTT------
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----hhcCC-CCCCEEEcCCC--CCcccCCHHH------
Confidence 889988755655553 467788999 99999887764433 23444 78999999996 4 66666433
Q ss_pred CCCC-CCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCC
Q 005813 582 LPLP-ASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPK 622 (676)
Q Consensus 582 ~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 622 (676)
+... ++|+.|++++ +.++.+|.. .+++|+.|++++++.
T Consensus 200 ~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred hhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 3445 7899999999 788888854 788999999998864
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=1.8e-14 Score=143.42 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=131.0
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccC-CCCCCCCCccEEEeecCcCcccccccccCCCCcccee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFP-EGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLT 508 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 508 (676)
++|++|++++|......+..+..+++|++|++++| .++.++ ..+..+++|+.|++++|......+..+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 56777777776544334446777888999999888 444444 5677788999999988764443344678889999999
Q ss_pred eeccCCCC-CCCcCCCCCCccceeeccCcchhhhhhhhcccccccccccc----EEEEecCCCcccccccccccccCCCC
Q 005813 509 IGIGGALP-SLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLR----RLTISRCDDDMVSFPLEDKRLGTTLP 583 (676)
Q Consensus 509 l~~c~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~n~~~l~~i~~~~~~l~~~~~ 583 (676)
+++|.... .++..+..+++|++|++++|....... ..+..+++|+ .|++++| .+..++... +
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~L~ls~n--~l~~~~~~~--~----- 197 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLN--PMNFIQPGA--F----- 197 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCEEEECCSS--CCCEECTTS--S-----
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhccccceeeecCCC--cccccCccc--c-----
Confidence 99876443 256678888999999999998766544 2355566666 8999998 787776544 1
Q ss_pred CCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCC
Q 005813 584 LPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCP 621 (676)
Q Consensus 584 ~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 621 (676)
...+|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus 198 ~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 198 KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 224899999999 67888886 46889999999999985
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=2.5e-16 Score=159.81 Aligned_cols=173 Identities=24% Similarity=0.244 Sum_probs=118.7
Q ss_pred CCcceEEEcCCCChhhHHHhhccC-----CccceeeccCCCCccccC-CCCCCCCCccEEEeecCcCccc--ccccc--c
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNN-----TSLETISIDSCKNLVSFP-EGGLPCAKLRTLAISNCKRLEA--LPKGL--H 499 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~--~ 499 (676)
++|++|++++|..... |..+..+ ++|++|++++|. +..++ ..+..+++|+.|++++|..... ++..+ .
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 4556666655443322 3333333 778888888774 44444 5667778888888888764433 22233 6
Q ss_pred CCCCccceeeeccCCCCCCC----cCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccc
Q 005813 500 NLTSLQQLTIGIGGALPSLE----EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLED 575 (676)
Q Consensus 500 ~l~~L~~L~l~~c~~l~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~ 575 (676)
.+++|++|++++|. +..++ ..+..+++|++|++++|......+. ..+..+++|+.|++++| .+..+|...
T Consensus 199 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~Ls~N--~l~~ip~~~ 272 (312)
T 1wwl_A 199 KFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFT--GLKQVPKGL 272 (312)
T ss_dssp SCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC---SCCCCCTTCCEEECTTS--CCSSCCSSC
T ss_pred cCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccch---hhhhhcCCCCEEECCCC--ccChhhhhc
Confidence 77888888888864 33222 1223567888888888877664421 24567899999999998 777777643
Q ss_pred ccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCC
Q 005813 576 KRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 576 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 621 (676)
+++|+.|++++ +.++.+|. +..+++|++|++++|+
T Consensus 273 ---------~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 ---------PAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ---------CSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ---------cCCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence 27899999999 78998875 8899999999999984
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=6.7e-15 Score=149.20 Aligned_cols=205 Identities=14% Similarity=0.098 Sum_probs=142.5
Q ss_pred CCcceEEEcCCCChhhHHHhh--ccCCccceeeccCCCCccccC----CCCCCCCCccEEEeecCcCcccccccccCCCC
Q 005813 430 PSLKSIRVGGCSKLESIAERL--DNNTSLETISIDSCKNLVSFP----EGGLPCAKLRTLAISNCKRLEALPKGLHNLTS 503 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 503 (676)
++|++|++++|......+..+ ..+++|++|++++|......+ ..+..+++|+.|++++|......+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 457777777776555555555 678888888888884333222 12335788888888887765555567778888
Q ss_pred ccceeeeccCCCCC--C--CcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccc-ccccccc
Q 005813 504 LQQLTIGIGGALPS--L--EEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSF-PLEDKRL 578 (676)
Q Consensus 504 L~~L~l~~c~~l~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i-~~~~~~l 578 (676)
|++|++++|..... + ....+.+++|++|++++|......... ...+.++++|+.|++++| .+..+ |.....
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~~l~~L~~L~Ls~N--~l~~~~p~~~~~- 246 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC-AALAAAGVQPHSLDLSHN--SLRATVNPSAPR- 246 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-HHHHHHTCCCSSEECTTS--CCCCCCCSCCSS-
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-HHHHhcCCCCCEEECCCC--CCCccchhhHHh-
Confidence 89998888764321 1 112367889999999999875433211 012467899999999998 77665 433211
Q ss_pred cCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCChh
Q 005813 579 GTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCPL 645 (676)
Q Consensus 579 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~~ 645 (676)
...+++|++|++++ +.++.+|..+. ++|++|++++| +++.+|...-.++|+.|++++|+.
T Consensus 247 ---~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 247 ---CMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ---CCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred ---ccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence 22347999999998 68888887654 89999999998 688876644468999999999873
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=7.6e-14 Score=143.93 Aligned_cols=240 Identities=18% Similarity=0.189 Sum_probs=133.2
Q ss_pred ceEEEeccCCCCCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCc
Q 005813 9 EQFCISGYEGKQFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCL 86 (676)
Q Consensus 9 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 86 (676)
+..+.++++...+|..+. .++++|+|++ +.++.+| .|+++++|++|+|++|...+.++.+.+. .++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~----~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~-----~L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP----RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-----NLPKL 81 (350)
T ss_dssp TEEEEESTTCCSCCTTCC----TTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC-----SCTTC
T ss_pred CEEEecCCCCCccCcCcC----CCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh-----cchhh
Confidence 456666777777776553 5777777777 3777777 3777777888888777544556544332 24444
Q ss_pred ceEEecccccccccccccCCCCcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhcccCCCceeEEEEcCC
Q 005813 87 ETLRFENMQEWEDWIPLRTGQGVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVSVASLPALCKFEIGGC 166 (676)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~L~~L~l~~~ 166 (676)
+++.. .++.++....|. .+..+++|++|+++++
T Consensus 82 ~~~l~-----------------------------~~~N~l~~l~~~------------------~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 82 HEIRI-----------------------------EKANNLLYINPE------------------AFQNLPNLQYLLISNT 114 (350)
T ss_dssp CEEEE-----------------------------EEETTCCEECTT------------------SBCCCTTCCEEEEEEE
T ss_pred hhhhc-----------------------------ccCCcccccCch------------------hhhhcccccccccccc
Confidence 43333 222233311111 1222333333333333
Q ss_pred CCeeEEeeccccCCCcceeecCCCCceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccC-CCccEEEeccCCCc
Q 005813 167 KKVVWRSATDHLGSQNSVVCRDTSNQVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDI-CSLKRLTIRRCPKI 245 (676)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~c~~l 245 (676)
........ ......++..|.+.++..+.. ++...+..+ ..++.|++++ +.+
T Consensus 115 ~l~~~~~~------------------------~~~~~~~l~~l~l~~~~~i~~---l~~~~f~~~~~~l~~L~L~~-N~i 166 (350)
T 4ay9_X 115 GIKHLPDV------------------------HKIHSLQKVLLDIQDNINIHT---IERNSFVGLSFESVILWLNK-NGI 166 (350)
T ss_dssp CCSSCCCC------------------------TTCCBSSCEEEEEESCTTCCE---ECTTSSTTSBSSCEEEECCS-SCC
T ss_pred ccccCCch------------------------hhcccchhhhhhhcccccccc---ccccchhhcchhhhhhcccc-ccc
Confidence 22111000 011122334444444433332 333333333 3577788877 467
Q ss_pred cccchhhhhhHHHHHhhcCCcceEEEecCCCCcccccc-cccCCCCCceEeecCCCCCCCCCCccCCCCccEEeeccccC
Q 005813 246 QSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLVKLPQ-SSLSLSSLREIEICSCHSLVSFPEVALPSKLRKIEIRYCDA 324 (676)
Q Consensus 246 ~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 324 (676)
+.++...+ ...+|++|++.++..++.+|. .+..+++|++|++++| .++.+|... +.+|+.|.+.++..
T Consensus 167 ~~i~~~~f---------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~-~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 167 QEIHNSAF---------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG-LENLKKLRARSTYN 235 (350)
T ss_dssp CEECTTSS---------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS-CTTCCEEECTTCTT
T ss_pred cCCChhhc---------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh-hccchHhhhccCCC
Confidence 66655411 115778888877777777764 4577788888888875 466666533 56777777777776
Q ss_pred cCcCchhhccCCCCCccEEeecc
Q 005813 325 LKSLPEAWMCDTNSSLEILHIYG 347 (676)
Q Consensus 325 l~~~~~~~~~~~l~~L~~L~l~~ 347 (676)
++.+|.. ..+++|+.+++.+
T Consensus 236 l~~lP~l---~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 236 LKKLPTL---EKLVALMEASLTY 255 (350)
T ss_dssp CCCCCCT---TTCCSCCEEECSC
T ss_pred cCcCCCc---hhCcChhhCcCCC
Confidence 7777753 6677777777754
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=1.9e-14 Score=145.47 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=141.1
Q ss_pred cCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC
Q 005813 393 SSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE 472 (676)
Q Consensus 393 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 472 (676)
+++|++|++.++. +.. ++ . +.. .++|++|++++|.. ..++. +..+++|++|++++| .++.++
T Consensus 40 l~~L~~L~l~~~~-i~~-l~--~----~~~------l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n-~l~~~~- 101 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT-IE--G----VQY------LNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGN-PLKNVS- 101 (308)
T ss_dssp HHTCCEEECTTSC-CCC-CT--T----GGG------CTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSC-CCSCCG-
T ss_pred cCCcCEEEeeCCC-ccC-ch--h----hhc------cCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCC-cCCCch-
Confidence 4588999988864 332 11 1 111 37889999988754 34444 788889999999888 466655
Q ss_pred CCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccc
Q 005813 473 GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHR 552 (676)
Q Consensus 473 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 552 (676)
.+..+++|+.|++++|. +..++. +..+++|++|++++|. +..++ .+..+++|++|++++|...... .+..
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~------~l~~ 171 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVSDLT------PLAN 171 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECCSSCCCCCG------GGTT
T ss_pred hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCc-cccCCCCccEEEccCCcCCCCh------hhcC
Confidence 46678889999998876 444543 7888899999998874 44555 3778888999999988766533 2678
Q ss_pred cccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCC
Q 005813 553 FSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 553 l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
+++|+.|++++| .+..++.- ..+++|+.|++++ +.++.++ .+..+++|+.|++++| .++..|.
T Consensus 172 l~~L~~L~l~~n--~l~~~~~l--------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 172 LSKLTTLKADDN--KISDISPL--------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CTTCCEEECCSS--CCCCCGGG--------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred CCCCCEEECCCC--ccCcChhh--------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCC-eeecCCe
Confidence 888999999987 77766641 2448889999988 6777777 4788889999999987 4666554
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=5.8e-14 Score=144.83 Aligned_cols=152 Identities=21% Similarity=0.222 Sum_probs=84.6
Q ss_pred ccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccc-cccCC-CCccceeeeccCCCCCCCcCCCCCCc
Q 005813 451 DNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPK-GLHNL-TSLQQLTIGIGGALPSLEEEDDLPTN 527 (676)
Q Consensus 451 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~ 527 (676)
..+++|++|++++| .+..++. .+....++..|++.++..+..++. .+..+ ..++.|++++|. ++.++......++
T Consensus 101 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 101 QNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQ 178 (350)
T ss_dssp CCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEE
T ss_pred hhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccc
Confidence 34444455555444 2333222 222334445555554444444432 22222 235555555532 3333333334455
Q ss_pred cceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcC
Q 005813 528 LQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIV 607 (676)
Q Consensus 528 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 607 (676)
|+.+++.++..+...+. ..+.++++|+.|++++| .+..+|... +.+|+.|.+.++++++.+| .+.
T Consensus 179 L~~l~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~N--~l~~lp~~~---------~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPN---DVFHGASGPVILDISRT--RIHSLPSYG---------LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EEEEECTTCTTCCCCCT---TTTTTEECCSEEECTTS--CCCCCCSSS---------CTTCCEEECTTCTTCCCCC-CTT
T ss_pred hhHHhhccCCcccCCCH---HHhccCcccchhhcCCC--CcCccChhh---------hccchHhhhccCCCcCcCC-Cch
Confidence 66666654443333322 24678888888888887 777777542 3678888888878888888 577
Q ss_pred CCCCccEEEeCC
Q 005813 608 DLQNLTELYLAD 619 (676)
Q Consensus 608 ~~~~L~~L~l~~ 619 (676)
.+++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 888888888875
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=3.1e-14 Score=139.51 Aligned_cols=174 Identities=18% Similarity=0.157 Sum_probs=76.0
Q ss_pred CcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeee
Q 005813 431 SLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIG 510 (676)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 510 (676)
+.+.++++++ .+..+|..+ .++++.|++++|......+..+..+++|+.|++++|......+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCC-CccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3444555442 233333322 2455555555552222222234445555555555544333223334455555555555
Q ss_pred ccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccE
Q 005813 511 IGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTS 590 (676)
Q Consensus 511 ~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~ 590 (676)
+|......+..+..+++|++|++++|....... ..+.++++|+.|++++| .+..++... +..+++|+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~ 159 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRLNTN--QLQSIPAGA------FDKLTNLQT 159 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCE
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEECcCC--cCCccCHHH------cCcCcCCCE
Confidence 543222222233444555555555554433222 12344555555555554 444443311 122344555
Q ss_pred EeecCCCCcccchh-hcCCCCCccEEEeCCC
Q 005813 591 LGISNFPNLERLSS-SIVDLQNLTELYLADC 620 (676)
Q Consensus 591 L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 620 (676)
|++++ +.++.++. .+..+++|++|++++|
T Consensus 160 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 160 LSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 55554 34444433 3444455555555544
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=8.7e-14 Score=138.01 Aligned_cols=191 Identities=17% Similarity=0.118 Sum_probs=130.4
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++++.|++.++.. ..++ .+..+++|++|++++| .+..++ .+..+++|+.|++++|......+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCc-cccc-ccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 6788888887653 3333 3677888888888888 455544 4667788888888887644333344678888888888
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCcc
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLT 589 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~ 589 (676)
++|......+..++.+++|++|++++|....... ..+.++++|+.|++++| .+..++... +..+++|+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~~------~~~l~~L~ 184 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK----GVFDKLTNLTELDLSYN--QLQSLPEGV------FDKLTQLK 184 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCH----HHhccCccCCEEECCCC--CcCccCHHH------hcCCccCC
Confidence 8875443333346778888888888887665443 34678888888888887 666665432 23457888
Q ss_pred EEeecCCCCcccchh-hcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCC
Q 005813 590 SLGISNFPNLERLSS-SIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGC 643 (676)
Q Consensus 590 ~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c 643 (676)
.|++++ +.++.++. .+..+++|++|++++|+-. +.+++|+.+++++|
T Consensus 185 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 185 DLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN 232 (272)
T ss_dssp EEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHH
T ss_pred EEECCC-CcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHH
Confidence 888888 56776665 4678888888888887522 12345666655544
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=5.9e-15 Score=151.61 Aligned_cols=202 Identities=15% Similarity=0.135 Sum_probs=140.0
Q ss_pred CCcceEEEcCCCChhh-HHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcc--cccccccCCCCccc
Q 005813 430 PSLKSIRVGGCSKLES-IAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLE--ALPKGLHNLTSLQQ 506 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~ 506 (676)
++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|++++|..+. .++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 6788888888764433 77778889999999999885333445556668899999999985555 35556778899999
Q ss_pred eeeeccCCCCC--CCcCCCCCC-ccceeeccCcch-hh-hhhhhccccccccccccEEEEecCCCc-cc-cccccccccc
Q 005813 507 LTIGIGGALPS--LEEEDDLPT-NLQSLNIWGNME-IW-KSMIERGRGFHRFSSLRRLTISRCDDD-MV-SFPLEDKRLG 579 (676)
Q Consensus 507 L~l~~c~~l~~--~~~~~~~~~-~L~~L~l~~~~~-~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~-l~-~i~~~~~~l~ 579 (676)
|++++|..++. ++..+..++ +|++|++++|.. .. .... ..+.++++|+.|++++| . +. ......
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~--~~l~~~~~~~l---- 243 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDS--VMLKNDCFQEF---- 243 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTC--TTCCGGGGGGG----
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCC--CcCCHHHHHHH----
Confidence 99999855553 344466788 999999999952 22 2221 24678999999999996 3 32 222222
Q ss_pred CCCCCCCCccEEeecCCCCcccc-hhhcCCCCCccEEEeCCCCCccccCCCCC---ccccceeeecCChhhHHH
Q 005813 580 TTLPLPASLTSLGISNFPNLERL-SSSIVDLQNLTELYLADCPKLKYFPEKGL---PSSLLRLYIVGCPLIEEK 649 (676)
Q Consensus 580 ~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~i~~~~l---~~~L~~L~i~~c~~l~~~ 649 (676)
...++|+.|++++|..+..- ...+..+++|++|++++| +++.++ ..+++.|++++|. ++..
T Consensus 244 ---~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~-l~~~ 308 (336)
T 2ast_B 244 ---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSH-FTTI 308 (336)
T ss_dssp ---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCC-SCCT
T ss_pred ---hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEeccc-Cccc
Confidence 23488999999997644221 225778999999999998 555443 3568888887554 4433
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=1e-13 Score=140.11 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=81.6
Q ss_pred CcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeee
Q 005813 431 SLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIG 510 (676)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 510 (676)
+|+.|+++++.. ..++ .+..+++|++|++++| .+..++. +..+++|+.|++++|. +..++ .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i-~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCc-cCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence 445555544322 2222 2444555555555544 3333333 4444555555555543 22232 34444555555555
Q ss_pred ccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccE
Q 005813 511 IGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTS 590 (676)
Q Consensus 511 ~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~ 590 (676)
+|. +..++ .+..+++|++|++++|....... +..+++|+.|++++| .+..++. +..+++|+.
T Consensus 116 ~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n--~l~~~~~--------l~~l~~L~~ 177 (308)
T 1h6u_A 116 STQ-ITDVT-PLAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNA--QVSDLTP--------LANLSKLTT 177 (308)
T ss_dssp TSC-CCCCG-GGTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSS--CCCCCGG--------GTTCTTCCE
T ss_pred CCC-CCCch-hhcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEccCC--cCCCChh--------hcCCCCCCE
Confidence 443 22233 24444555555555554433211 344455555555554 4433332 112344555
Q ss_pred EeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCCccccceeeecCCh
Q 005813 591 LGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCP 644 (676)
Q Consensus 591 L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~ 644 (676)
|++++ +.++.++. +..+++|++|++++| .++.++.-.-.++|+.|++++|+
T Consensus 178 L~l~~-n~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 178 LKADD-NKISDISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp EECCS-SCCCCCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred EECCC-CccCcChh-hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 55554 34444442 444555555555554 34444321223445555555443
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=2.9e-15 Score=153.94 Aligned_cols=202 Identities=15% Similarity=0.135 Sum_probs=147.3
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccc--cCCCCCCCCCccEEEeecCcCcccccccccCCCCccce
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVS--FPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQL 507 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 507 (676)
.+++.|++.++......+ .+..+++|++|++++|. +.. ++..+..+++|++|++++|......+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccch-hhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 567777777754333332 35578999999999995 442 56667789999999999997555666678889999999
Q ss_pred eeeccCCCCC--CCcCCCCCCccceeeccCc-chhhhhhhhccccccccc-cccEEEEecCCCcc--cccccccccccCC
Q 005813 508 TIGIGGALPS--LEEEDDLPTNLQSLNIWGN-MEIWKSMIERGRGFHRFS-SLRRLTISRCDDDM--VSFPLEDKRLGTT 581 (676)
Q Consensus 508 ~l~~c~~l~~--~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~l~-~L~~L~l~~n~~~l--~~i~~~~~~l~~~ 581 (676)
++++|..++. ++..+..+++|++|++++| ........ ..+..++ +|+.|++++|...+ ..++....
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~----- 219 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ---VAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----- 219 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH---HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-----
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH---HHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-----
Confidence 9999866653 4545677899999999999 55443222 2478899 99999999972112 33333322
Q ss_pred CCCCCCccEEeecCCCCcc-cchhhcCCCCCccEEEeCCCCCccccCCCCC--ccccceeeecCC
Q 005813 582 LPLPASLTSLGISNFPNLE-RLSSSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGC 643 (676)
Q Consensus 582 ~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c 643 (676)
.+++|+.|++++|..++ ..+..+..+++|++|++++|..+....-..+ .++|++|++++|
T Consensus 220 --~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 220 --RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp --HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred --hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 34899999999976454 5555888999999999999974332211122 689999999999
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=3e-13 Score=134.10 Aligned_cols=168 Identities=20% Similarity=0.168 Sum_probs=86.6
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCcccee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLT 508 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 508 (676)
++|++|++++|... .++ .+..+++|++|++++| .++.++. .+..+++|+.|++++|......+..+..+++|++|+
T Consensus 63 ~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 63 PNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp TTCCEEECTTSCCC-CCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCC-Cch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 55666666665432 222 4555666666666666 3444333 345556666666666543322233345566666666
Q ss_pred eeccCCCCCCC-cCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCC
Q 005813 509 IGIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPAS 587 (676)
Q Consensus 509 l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~ 587 (676)
+++|. +..++ ..+..+++|++|++++|....... ..+.++++|+.|++++| .+..++... +..+++
T Consensus 140 L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~ 206 (272)
T 3rfs_A 140 LAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE----GVFDKLTQLKDLRLYQN--QLKSVPDGV------FDRLTS 206 (272)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCSCCCTTT------TTTCTT
T ss_pred CCCCc-cCccCHHHhccCccCCEEECCCCCcCccCH----HHhcCCccCCEEECCCC--cCCccCHHH------HhCCcC
Confidence 66653 32332 224556666666666665543332 23455666666666665 555444321 223356
Q ss_pred ccEEeecCCCCcccchhhcCCCCCccEEEeCCC
Q 005813 588 LTSLGISNFPNLERLSSSIVDLQNLTELYLADC 620 (676)
Q Consensus 588 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 620 (676)
|+.|++++++ + .+.+++|+.++++.|
T Consensus 207 L~~L~l~~N~-~------~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 207 LQYIWLHDNP-W------DCTCPGIRYLSEWIN 232 (272)
T ss_dssp CCEEECCSSC-B------CCCTTTTHHHHHHHH
T ss_pred CCEEEccCCC-c------cccCcHHHHHHHHHH
Confidence 6666666632 1 134455555555554
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=138.82 Aligned_cols=227 Identities=17% Similarity=0.127 Sum_probs=160.7
Q ss_pred CCcceEEEcCCCChhh----HHHhhccCCccceeeccCCCCccccCCCC--CCCCCccEEEeecCcCccccc----cccc
Q 005813 430 PSLKSIRVGGCSKLES----IAERLDNNTSLETISIDSCKNLVSFPEGG--LPCAKLRTLAISNCKRLEALP----KGLH 499 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~ 499 (676)
..++.+.+.++..... +... ..+++|++|++++|......|..+ ..+++|+.|++++|......+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3567777777654321 2222 235779999999996555666666 789999999999987655433 2345
Q ss_pred CCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccccccc
Q 005813 500 NLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLG 579 (676)
Q Consensus 500 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~ 579 (676)
.+++|++|++++|......+..++.+++|++|++++|+............+..+++|+.|++++| .+..++.....+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~~l- 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT--GMETPTGVCAAL- 219 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS--CCCCHHHHHHHH-
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC--CCCchHHHHHHH-
Confidence 79999999999987655555678899999999999998655322111123578999999999998 777665531110
Q ss_pred CCCCCCCCccEEeecCCCCcccc-hhhcCCC---CCccEEEeCCCCCccccCCCCCccccceeeecCChhhHHHHhhcCC
Q 005813 580 TTLPLPASLTSLGISNFPNLERL-SSSIVDL---QNLTELYLADCPKLKYFPEKGLPSSLLRLYIVGCPLIEEKCRKDGG 655 (676)
Q Consensus 580 ~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~---~~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c~~l~~~~~~~~~ 655 (676)
+..+++|++|++++ +.++.+ |..+..+ ++|++|++++| +++.+|. .++++|++|++++|..- ..
T Consensus 220 --~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~~~~L~~L~Ls~N~l~-~~------ 287 (310)
T 4glp_A 220 --AAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPK-GLPAKLRVLDLSSNRLN-RA------ 287 (310)
T ss_dssp --HHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCS-CCCSCCSCEECCSCCCC-SC------
T ss_pred --HhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCC-CCCchhh-hhcCCCCEEECCCCcCC-CC------
Confidence 11348999999999 678776 6666655 79999999998 6888887 44589999999999632 11
Q ss_pred ccccc-cccceEEEceee
Q 005813 656 QYWLE-THIPVVLIDWKS 672 (676)
Q Consensus 656 ~~~~~-~~i~~~~~~~~~ 672 (676)
+.... +++..+.+.++.
T Consensus 288 ~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTSCCCCSCEECSSTT
T ss_pred chhhhCCCccEEECcCCC
Confidence 11233 666666665543
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=2.6e-13 Score=132.90 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=111.7
Q ss_pred CccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeec
Q 005813 454 TSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNI 533 (676)
Q Consensus 454 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l 533 (676)
.+.++++++++ .++.+|..+. ++++.|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35566777665 5666665443 47777777776644444445667777777777776544333434566777777777
Q ss_pred cCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCc
Q 005813 534 WGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNL 612 (676)
Q Consensus 534 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L 612 (676)
++|....... ..+.++++|+.|++++| .+..++... +..+++|+.|++++ +.++.++. .+..+++|
T Consensus 91 ~~n~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 91 ANNQLASLPL----GVFDHLTQLDKLYLGGN--QLKSLPSGV------FDRLTKLKELRLNT-NQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCCcccccCh----hHhcccCCCCEEEcCCC--cCCCcChhH------hccCCcccEEECcC-CcCCccCHHHcCcCcCC
Confidence 7776665443 24567777777777776 666655432 23346777777777 56766665 56677777
Q ss_pred cEEEeCCCCCccccCCCCC--ccccceeeecCChh
Q 005813 613 TELYLADCPKLKYFPEKGL--PSSLLRLYIVGCPL 645 (676)
Q Consensus 613 ~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c~~ 645 (676)
++|++++| .++.++...+ .++|++|++.+|+.
T Consensus 158 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 158 QTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 77777776 5666665433 46777777777653
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=5.8e-13 Score=133.33 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=136.0
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++++.|++++|.. ..++ .+..+++|++|++++| .++.++. +..+++|+.|++++|. +..++ .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i-~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCc-ccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEEC
Confidence 6799999998754 4443 4778999999999998 5666665 7788999999999976 45554 4888999999999
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCcc
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLT 589 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~ 589 (676)
++|. +..++ .+..+++|++|++++|...... .+..+++|+.|++++| .+..++. . ..+++|+
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~L~~N--~l~~~~~-l-------~~l~~L~ 181 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLEDN--QISDIVP-L-------AGLTKLQ 181 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSS--CCCCCGG-G-------TTCTTCC
T ss_pred CCCc-CCCCh-hhcCCCCCCEEEccCCcCCcch------hhccCCCCCEEEccCC--ccccchh-h-------cCCCccC
Confidence 9875 55554 6788899999999999876652 4788999999999998 7777654 2 2558999
Q ss_pred EEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCC
Q 005813 590 SLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 590 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
.|++++ +.++.++ .+..+++|+.|++++| .+...|.
T Consensus 182 ~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n-~i~~~~~ 217 (291)
T 1h6t_A 182 NLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 217 (291)
T ss_dssp EEECCS-SCCCBCG-GGTTCTTCSEEEEEEE-EEECCCE
T ss_pred EEECCC-CcCCCCh-hhccCCCCCEEECcCC-cccCCcc
Confidence 999999 6888887 5889999999999998 4555544
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=6.4e-13 Score=124.80 Aligned_cols=149 Identities=18% Similarity=0.169 Sum_probs=78.6
Q ss_pred cCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCcccee
Q 005813 452 NNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSL 531 (676)
Q Consensus 452 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 531 (676)
.+++|++|++++| .+.+++ .+..+++|+.|++++| .+..++ .+..+++|++|++++|......+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3556667777666 445555 4555666777777666 233332 45566666666666654333234345556666666
Q ss_pred eccCcchhhhhhhhccccccccccccEEEEecCCCc-ccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCC
Q 005813 532 NIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDD-MVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQ 610 (676)
Q Consensus 532 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 610 (676)
++++|......+ ..+..+++|+.|++++| . +..++. .. .+++|+.|++++ +.++.++ .+..++
T Consensus 118 ~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n--~~i~~~~~-l~-------~l~~L~~L~l~~-n~i~~~~-~l~~l~ 181 (197)
T 4ezg_A 118 DISHSAHDDSIL----TKINTLPKVNSIDLSYN--GAITDIMP-LK-------TLPELKSLNIQF-DGVHDYR-GIEDFP 181 (197)
T ss_dssp ECCSSBCBGGGH----HHHTTCSSCCEEECCSC--TBCCCCGG-GG-------GCSSCCEEECTT-BCCCCCT-TGGGCS
T ss_pred EecCCccCcHhH----HHHhhCCCCCEEEccCC--CCccccHh-hc-------CCCCCCEEECCC-CCCcChH-HhccCC
Confidence 666665554333 13455666666666664 3 333331 11 224455555554 3344444 444445
Q ss_pred CccEEEeCCC
Q 005813 611 NLTELYLADC 620 (676)
Q Consensus 611 ~L~~L~l~~c 620 (676)
+|++|++++|
T Consensus 182 ~L~~L~l~~N 191 (197)
T 4ezg_A 182 KLNQLYAFSQ 191 (197)
T ss_dssp SCCEEEECBC
T ss_pred CCCEEEeeCc
Confidence 5555555544
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=5.6e-14 Score=147.18 Aligned_cols=207 Identities=16% Similarity=0.150 Sum_probs=131.0
Q ss_pred CCcceEEEcCCCChh----hHHHhhccCCccceeeccCCCCccc-----cCCCCCCC---------CCccEEEeecCcCc
Q 005813 430 PSLKSIRVGGCSKLE----SIAERLDNNTSLETISIDSCKNLVS-----FPEGGLPC---------AKLRTLAISNCKRL 491 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~----~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~---------~~L~~L~l~~~~~~ 491 (676)
++|++|++++|.... .++..+..+++|++|++++|. +.. ++..+..+ ++|+.|++++|...
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 566667776665443 466677778888888888884 332 11112222 78888888887644
Q ss_pred -cccc---ccccCCCCccceeeeccCCCC-----CCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEe
Q 005813 492 -EALP---KGLHNLTSLQQLTIGIGGALP-----SLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTIS 562 (676)
Q Consensus 492 -~~~~---~~~~~l~~L~~L~l~~c~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 562 (676)
..++ ..+..+++|++|++++|..-. ..+..+..+++|++|++++|..........+..+..+++|+.|+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 2333 345678899999999874321 1222567788999999999987532211111357889999999999
Q ss_pred cCCCcccccccccccccCCC--CCCCCccEEeecCCCCccc-----chhhc-CCCCCccEEEeCCCCCccccCC--CCC-
Q 005813 563 RCDDDMVSFPLEDKRLGTTL--PLPASLTSLGISNFPNLER-----LSSSI-VDLQNLTELYLADCPKLKYFPE--KGL- 631 (676)
Q Consensus 563 ~n~~~l~~i~~~~~~l~~~~--~~~~~L~~L~l~~c~~l~~-----l~~~~-~~~~~L~~L~l~~c~~l~~i~~--~~l- 631 (676)
+| .+....... +...+ ...++|+.|++++ +.+.. ++..+ .++++|++|++++|+ ++.... ..+
T Consensus 253 ~n--~i~~~~~~~--l~~~l~~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~ 326 (386)
T 2ca6_A 253 DC--LLSARGAAA--VVDAFSKLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIR 326 (386)
T ss_dssp TC--CCCHHHHHH--HHHHHHTCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHH
T ss_pred CC--CCchhhHHH--HHHHHhhccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHH
Confidence 98 555431110 00111 1258899999999 56765 77766 668999999999984 554432 111
Q ss_pred --ccccceeeecCC
Q 005813 632 --PSSLLRLYIVGC 643 (676)
Q Consensus 632 --~~~L~~L~i~~c 643 (676)
.+.++.+.+...
T Consensus 327 ~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 327 EVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHTCCEECCC
T ss_pred HHhhhcCcchhhhc
Confidence 455555555544
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=2.4e-12 Score=128.74 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=79.6
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++|+.|++++|.... ++. +..+++|++|++++| .++.++. +..+++|+.|++++|. +..+ ..+..+++|+.|++
T Consensus 68 ~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSC-CCCC-GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEc
Confidence 566666666654322 222 556666666666666 3444433 4555666666666654 2333 24555666666666
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCcc
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLT 589 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~ 589 (676)
++|. +..++ .+..+++|++|++++|......+ +..+++|+.|++++| .+..++. +..+++|+
T Consensus 142 ~~n~-l~~~~-~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N--~i~~l~~--------l~~l~~L~ 203 (291)
T 1h6t_A 142 GNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKN--HISDLRA--------LAGLKNLD 203 (291)
T ss_dssp CSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSS--CCCBCGG--------GTTCTTCS
T ss_pred cCCc-CCcch-hhccCCCCCEEEccCCccccchh------hcCCCccCEEECCCC--cCCCChh--------hccCCCCC
Confidence 6653 33332 45556666666666665544322 455666666666665 5555432 11335666
Q ss_pred EEeecCCCCccc
Q 005813 590 SLGISNFPNLER 601 (676)
Q Consensus 590 ~L~l~~c~~l~~ 601 (676)
.|++++ +.+..
T Consensus 204 ~L~l~~-n~i~~ 214 (291)
T 1h6t_A 204 VLELFS-QECLN 214 (291)
T ss_dssp EEEEEE-EEEEC
T ss_pred EEECcC-CcccC
Confidence 666666 34433
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=2.5e-12 Score=141.40 Aligned_cols=172 Identities=18% Similarity=0.214 Sum_probs=136.9
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++|+.|++++|. +..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..++ .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 678999998865 34444 4788999999999998 5666655 7788999999999976 44554 6888999999999
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCcc
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLT 589 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~ 589 (676)
++|. +..++ .+..+++|+.|++++|...... .+..+++|+.|+|++| .+..++. +..+++|+
T Consensus 117 s~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N--~l~~~~~--------l~~l~~L~ 178 (605)
T 1m9s_A 117 EHNG-ISDIN-GLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLEDN--QISDIVP--------LAGLTKLQ 178 (605)
T ss_dssp TTSC-CCCCG-GGGGCTTCSEEECCSSCCCCCG------GGGSCTTCSEEECCSS--CCCCCGG--------GTTCTTCC
T ss_pred cCCC-CCCCc-cccCCCccCEEECCCCccCCch------hhcccCCCCEEECcCC--cCCCchh--------hccCCCCC
Confidence 9975 44454 6788999999999999877652 4789999999999998 7776654 22558999
Q ss_pred EEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCC
Q 005813 590 SLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 590 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
.|++++ +.+..++ .+..+++|+.|++++| .+...|.
T Consensus 179 ~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 179 NLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp EEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred EEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 999999 6788886 6889999999999998 4555554
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=2.7e-12 Score=120.43 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=122.1
Q ss_pred CCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccc
Q 005813 475 LPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFS 554 (676)
Q Consensus 475 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 554 (676)
..+++|+.|++++|. +..++ .+..+++|++|++++| .+..++ .+..+++|++|++++|......+ ..+..++
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~ 112 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKI----PNLSGLT 112 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGS----CCCTTCT
T ss_pred hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccC----hhhcCCC
Confidence 457899999999976 45666 6889999999999998 555555 67889999999999998876544 3588999
Q ss_pred cccEEEEecCCCccccc-ccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCCcc
Q 005813 555 SLRRLTISRCDDDMVSF-PLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGLPS 633 (676)
Q Consensus 555 ~L~~L~l~~n~~~l~~i-~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l~~ 633 (676)
+|+.|++++| .+... +... ..+++|+.|++++|..++.++ .+..+++|++|++++| .++.++...-.+
T Consensus 113 ~L~~L~Ls~n--~i~~~~~~~l-------~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~ 181 (197)
T 4ezg_A 113 SLTLLDISHS--AHDDSILTKI-------NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFP 181 (197)
T ss_dssp TCCEEECCSS--BCBGGGHHHH-------TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCS
T ss_pred CCCEEEecCC--ccCcHhHHHH-------hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCC
Confidence 9999999998 66642 2222 245899999999965588888 7899999999999998 588876433368
Q ss_pred ccceeeecCCh
Q 005813 634 SLLRLYIVGCP 644 (676)
Q Consensus 634 ~L~~L~i~~c~ 644 (676)
+|++|++++|+
T Consensus 182 ~L~~L~l~~N~ 192 (197)
T 4ezg_A 182 KLNQLYAFSQT 192 (197)
T ss_dssp SCCEEEECBC-
T ss_pred CCCEEEeeCcc
Confidence 99999999986
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=2e-13 Score=143.04 Aligned_cols=234 Identities=13% Similarity=0.101 Sum_probs=154.3
Q ss_pred ccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCC--h--------hhHHHhhccCCccceeec
Q 005813 392 TSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSK--L--------ESIAERLDNNTSLETISI 461 (676)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--l--------~~~~~~~~~~~~L~~L~l 461 (676)
..++|++|++++|. +.... ...+...+.. .++|++|++++|.. + ..+...+..+++|++|++
T Consensus 30 ~~~~L~~L~L~~n~-i~~~~-~~~l~~~l~~------~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT-IGTEA-ARWLSENIAS------KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HCSCCCEEECTTSE-ECHHH-HHHHHHTTTT------CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred cCCCccEEECCCCC-CCHHH-HHHHHHHHHh------CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 46789999999874 22200 0001011111 37899999998732 1 223344578999999999
Q ss_pred cCCCCccc-----cCCCCCCCCCccEEEeecCcCccc----ccccccCC---------CCccceeeeccCCC-CCCC---
Q 005813 462 DSCKNLVS-----FPEGGLPCAKLRTLAISNCKRLEA----LPKGLHNL---------TSLQQLTIGIGGAL-PSLE--- 519 (676)
Q Consensus 462 ~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~c~~l-~~~~--- 519 (676)
++|. +.. ++..+..+++|+.|++++|..... ++..+..+ ++|++|++++|..- ..++
T Consensus 102 s~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 9984 443 444566789999999999875322 22223334 89999999987643 2222
Q ss_pred cCCCCCCccceeeccCcchhhhhhhhc-cccccccccccEEEEecCCCcc-----cccccccccccCCCCCCCCccEEee
Q 005813 520 EEDDLPTNLQSLNIWGNMEIWKSMIER-GRGFHRFSSLRRLTISRCDDDM-----VSFPLEDKRLGTTLPLPASLTSLGI 593 (676)
Q Consensus 520 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~n~~~l-----~~i~~~~~~l~~~~~~~~~L~~L~l 593 (676)
..+..+++|++|++++|.......... ...+.++++|+.|++++| .+ ..++... ...++|+.|++
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l-------~~~~~L~~L~L 251 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIAL-------KSWPNLRELGL 251 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHG-------GGCTTCCEEEC
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHH-------ccCCCcCEEEC
Confidence 244567899999999998764321110 025788999999999998 55 3344322 23488999999
Q ss_pred cCCCCccc-----chhhc--CCCCCccEEEeCCCCCccc-----cCCCC--CccccceeeecCChh
Q 005813 594 SNFPNLER-----LSSSI--VDLQNLTELYLADCPKLKY-----FPEKG--LPSSLLRLYIVGCPL 645 (676)
Q Consensus 594 ~~c~~l~~-----l~~~~--~~~~~L~~L~l~~c~~l~~-----i~~~~--l~~~L~~L~i~~c~~ 645 (676)
++| .+.. ++..+ ..+++|++|++++| .++. ++... -.++|++|++++|+.
T Consensus 252 ~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 252 NDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp TTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 994 5654 35555 44899999999998 4665 55422 148999999999973
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=2.3e-13 Score=141.01 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=54.0
Q ss_pred chhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCC-cceEEEecCCCCcccccccccCC-----CCCceEeecC
Q 005813 225 NELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSC-RLEYLRLSECKGLVKLPQSSLSL-----SSLREIEICS 298 (676)
Q Consensus 225 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~-~L~~L~l~~~~~l~~l~~~~~~l-----~~L~~L~l~~ 298 (676)
+.+....++|++|++++| .++......+.+.+..+ + +|++|++++|......+..+..+ ++|++|++++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~----~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANT----PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTC----CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhC----CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 344455556888888875 46666554333334333 5 77788877764333333333332 6777777777
Q ss_pred CCCCCCCCC------ccCC-CCccEEeeccccCcCcCc
Q 005813 299 CHSLVSFPE------VALP-SKLRKIEIRYCDALKSLP 329 (676)
Q Consensus 299 ~~~l~~~~~------~~~~-~~L~~L~l~~~~~l~~~~ 329 (676)
|. +...+. .... ++|++|++++|. ++..+
T Consensus 90 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 90 NF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred Cc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence 64 333222 1112 567777777666 44443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=1.9e-11 Score=117.65 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=84.3
Q ss_pred ceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCC-cCCCCCCccceeeccC
Q 005813 457 ETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQSLNIWG 535 (676)
Q Consensus 457 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~ 535 (676)
+.++.+++ .++.+|..+. ++|+.|++++|......+..+..+++|+.|++++|. +..++ ..+..+++|++|++++
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 34455443 4555554332 566666666655444334455666666666666654 33333 2345566666666666
Q ss_pred cchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccE
Q 005813 536 NMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTE 614 (676)
Q Consensus 536 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~ 614 (676)
|....... ..+..+++|+.|++++| .+..++.....+ ++|+.|++++ +.++.++. .+..+++|+.
T Consensus 98 N~l~~l~~----~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l-------~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 98 NQLTVLPS----AVFDRLVHLKELFMCCN--KLTELPRGIERL-------THLTHLALDQ-NQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp SCCCCCCT----TTTTTCTTCCEEECCSS--CCCSCCTTGGGC-------TTCSEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred CcCCccCh----hHhCcchhhCeEeccCC--cccccCcccccC-------CCCCEEECCC-CcCCccCHHHHhCCCCCCE
Confidence 65544332 23566677777777776 566665443333 6677777766 56666654 4566677777
Q ss_pred EEeCCCC
Q 005813 615 LYLADCP 621 (676)
Q Consensus 615 L~l~~c~ 621 (676)
|++++|+
T Consensus 164 L~l~~N~ 170 (229)
T 3e6j_A 164 AYLFGNP 170 (229)
T ss_dssp EECTTSC
T ss_pred EEeeCCC
Confidence 7777664
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=1.6e-11 Score=118.07 Aligned_cols=150 Identities=24% Similarity=0.237 Sum_probs=122.4
Q ss_pred CccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccE
Q 005813 479 KLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRR 558 (676)
Q Consensus 479 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 558 (676)
+-+.++.++ ..+..+|..+. ++|+.|++++|......+..+..+++|++|++++|....... ..+.++++|+.
T Consensus 20 s~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l~~L~~ 92 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV----GVFDSLTQLTV 92 (229)
T ss_dssp ETTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred eCCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh----hhcccCCCcCE
Confidence 345677766 44677776443 799999999987555556678899999999999999865544 35789999999
Q ss_pred EEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCCCCC--ccccc
Q 005813 559 LTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLL 636 (676)
Q Consensus 559 L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~ 636 (676)
|++++| .+..++... +..+++|+.|++++ +.++.+|..+..+++|++|++++| +++.++...+ .++|+
T Consensus 93 L~Ls~N--~l~~l~~~~------~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 93 LDLGTN--QLTVLPSAV------FDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp EECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred EECCCC--cCCccChhH------hCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCC
Confidence 999998 888877543 34569999999999 789999999999999999999998 7888887544 68999
Q ss_pred eeeecCChh
Q 005813 637 RLYIVGCPL 645 (676)
Q Consensus 637 ~L~i~~c~~ 645 (676)
.|++.+||.
T Consensus 163 ~L~l~~N~~ 171 (229)
T 3e6j_A 163 HAYLFGNPW 171 (229)
T ss_dssp EEECTTSCB
T ss_pred EEEeeCCCc
Confidence 999999873
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=5.4e-12 Score=138.66 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=117.1
Q ss_pred ccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccC
Q 005813 392 TSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFP 471 (676)
Q Consensus 392 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 471 (676)
.+++|+.|++.++. +.. ++ .+.. .++|+.|++++|.... ++. +..+++|+.|++++| .+..++
T Consensus 41 ~L~~L~~L~l~~n~-i~~-l~------~l~~------l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N-~l~~l~ 103 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKS-VQ------GIQY------LPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDEN-KIKDLS 103 (605)
T ss_dssp HHTTCCCCBCTTCC-CCC-CT------TGGG------CTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSS-CCCCCT
T ss_pred cCCCCCEEECcCCC-CCC-Ch------HHcc------CCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCC-CCCCCh
Confidence 35678888887754 222 11 1111 3688888888875433 333 677888888888887 556555
Q ss_pred CCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhcccccc
Q 005813 472 EGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFH 551 (676)
Q Consensus 472 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 551 (676)
.+..+++|+.|++++|.. ..+ ..+..+++|+.|++++|. +..++ .+..+++|+.|++++|......+ +.
T Consensus 104 -~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~~~~------l~ 172 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIVP------LA 172 (605)
T ss_dssp -TSTTCTTCCEEECTTSCC-CCC-GGGGGCTTCSEEECCSSC-CCCCG-GGGSCTTCSEEECCSSCCCCCGG------GT
T ss_pred -hhccCCCCCEEEecCCCC-CCC-ccccCCCccCEEECCCCc-cCCch-hhcccCCCCEEECcCCcCCCchh------hc
Confidence 466788888888888763 344 357778888888888864 44443 67778888888888887665433 67
Q ss_pred ccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccch
Q 005813 552 RFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLS 603 (676)
Q Consensus 552 ~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 603 (676)
.+++|+.|+|++| .+..++. +..+++|+.|++++ +.+...|
T Consensus 173 ~l~~L~~L~Ls~N--~i~~l~~--------l~~l~~L~~L~L~~-N~l~~~p 213 (605)
T 1m9s_A 173 GLTKLQNLYLSKN--HISDLRA--------LAGLKNLDVLELFS-QECLNKP 213 (605)
T ss_dssp TCTTCCEEECCSS--CCCBCGG--------GTTCTTCSEEECCS-EEEECCC
T ss_pred cCCCCCEEECcCC--CCCCChH--------HccCCCCCEEEccC-CcCcCCc
Confidence 7888888888887 6666643 22457888888888 4555444
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=2.1e-13 Score=141.40 Aligned_cols=237 Identities=16% Similarity=0.106 Sum_probs=138.9
Q ss_pred CCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccC-----CccceeeccCCCCcc
Q 005813 394 SFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNN-----TSLETISIDSCKNLV 468 (676)
Q Consensus 394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~l~ 468 (676)
++|++|+++++. ++. .+...+...+. .++.+|++|++++|......+..+..+ ++|++|++++|. ++
T Consensus 22 ~~L~~L~Ls~n~-l~~-~~~~~l~~~l~-----~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~ 93 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYS-ISTVELIQAFA-----NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LS 93 (362)
T ss_dssp TTCCEEECTTSC-GGG-SCHHHHHHHHH-----TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred CCceEEEccCCC-CCh-HHHHHHHHHHH-----hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence 348999998876 333 11101101111 223489999998886544434334332 889999999884 44
Q ss_pred ccCC-----CCCCC-CCccEEEeecCcCccccccc----ccC-CCCccceeeeccCCCCCC----CcCCCCC-Cccceee
Q 005813 469 SFPE-----GGLPC-AKLRTLAISNCKRLEALPKG----LHN-LTSLQQLTIGIGGALPSL----EEEDDLP-TNLQSLN 532 (676)
Q Consensus 469 ~~~~-----~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~c~~l~~~----~~~~~~~-~~L~~L~ 532 (676)
..+. .+..+ ++|+.|++++|......+.. +.. .++|++|++++|..-... +..+..+ ++|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 3322 12333 78999999987743332222 233 358999999887533211 1122333 4899999
Q ss_pred ccCcchhhhhhhhcccccccc-ccccEEEEecCCCcccccccccccccCC-CCCCCCccEEeecCCCCcccc-----hhh
Q 005813 533 IWGNMEIWKSMIERGRGFHRF-SSLRRLTISRCDDDMVSFPLEDKRLGTT-LPLPASLTSLGISNFPNLERL-----SSS 605 (676)
Q Consensus 533 l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~l~~i~~~~~~l~~~-~~~~~~L~~L~l~~c~~l~~l-----~~~ 605 (676)
+++|.............+..+ ++|+.|++++| .+....... +... ...+++|+.|++++ +.+... ...
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~--l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAE--LAYIFSSIPNHVVSLNLCL-NCLHGPSLENLKLL 248 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHH--HHHHHHHSCTTCCEEECCS-SCCCCCCHHHHHHT
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHH--HHHHHhcCCCCceEEECcC-CCCCcHHHHHHHHH
Confidence 999877655442211234555 58999999987 665521110 1111 11236899999988 566543 334
Q ss_pred cCCCCCccEEEeCCCCCccccCCC-------CC--ccccceeeecCCh
Q 005813 606 IVDLQNLTELYLADCPKLKYFPEK-------GL--PSSLLRLYIVGCP 644 (676)
Q Consensus 606 ~~~~~~L~~L~l~~c~~l~~i~~~-------~l--~~~L~~L~i~~c~ 644 (676)
+..+++|++|++++| .+..++.. .+ .++|++|++++|+
T Consensus 249 ~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 249 KDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 577888999999988 33333321 12 4678888888886
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.1e-11 Score=128.17 Aligned_cols=131 Identities=23% Similarity=0.178 Sum_probs=57.8
Q ss_pred CCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccccccc
Q 005813 500 NLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLG 579 (676)
Q Consensus 500 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~ 579 (676)
.+++|++|++++|..-...+..+..+++|++|++++|....... ..+.++++|+.|++++| .+..++...
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N--~i~~~~~~~---- 131 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNN--HIVVVDRNA---- 131 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS--CCCEECTTT----
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH----HHhCCCcCCCEEECCCC--cccEECHHH----
Confidence 44444444444432221112234444455555555544333222 23445555555555555 444443211
Q ss_pred CCCCCCCCccEEeecCCCCcccchhhc----CCCCCccEEEeCCCCCccccCCCCC--ccc--cceeeecCCh
Q 005813 580 TTLPLPASLTSLGISNFPNLERLSSSI----VDLQNLTELYLADCPKLKYFPEKGL--PSS--LLRLYIVGCP 644 (676)
Q Consensus 580 ~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~l~~c~~l~~i~~~~l--~~~--L~~L~i~~c~ 644 (676)
+..+++|+.|++++ +.++.+|... ..+++|+.|++++| .++.+|...+ .+. ++.|++.+||
T Consensus 132 --~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 132 --FEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp --TTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred --hCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 22335555555555 4555554422 34556666666655 4555543222 122 3555555554
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.26 E-value=2.8e-11 Score=115.59 Aligned_cols=130 Identities=14% Similarity=0.178 Sum_probs=59.1
Q ss_pred CccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccE
Q 005813 479 KLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRR 558 (676)
Q Consensus 479 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 558 (676)
+|+.|+++++......+..+..+++|+.|++++|......+..+..+++|++|++++|....... ..+.++++|+.
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~ 108 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK----SLFEGLFSLQL 108 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH----hHccCCCCCCE
Confidence 44555554433221112234444455555555443222223334444444444444444433222 22455555555
Q ss_pred EEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCC
Q 005813 559 LTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCP 621 (676)
Q Consensus 559 L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 621 (676)
|++++| .+..++... +..+++|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus 109 L~L~~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNAN--KINCLRVDA------FQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC--CCCEeCHHH------cCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 555555 444443221 22335555555555 44555543 35555666666666553
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=6.1e-12 Score=123.78 Aligned_cols=170 Identities=18% Similarity=0.205 Sum_probs=132.1
Q ss_pred CcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeee
Q 005813 431 SLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIG 510 (676)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 510 (676)
++..+++.++. +..++ .+..+++|++|++++| .++.++ .+..+++|+.|++++|. +..++. +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCC-ccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECC
Confidence 45555566543 33333 4567899999999999 677777 57788999999999976 555655 8899999999999
Q ss_pred ccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccE
Q 005813 511 IGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTS 590 (676)
Q Consensus 511 ~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~ 590 (676)
+|. +..++. ... ++|+.|++++|...... .+.++++|+.|++++| .+..++. . ..+++|+.
T Consensus 94 ~N~-l~~l~~-~~~-~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~Ls~N--~i~~~~~-l-------~~l~~L~~ 154 (263)
T 1xeu_A 94 RNR-LKNLNG-IPS-ACLSRLFLDNNELRDTD------SLIHLKNLEILSIRNN--KLKSIVM-L-------GFLSKLEV 154 (263)
T ss_dssp SSC-CSCCTT-CCC-SSCCEEECCSSCCSBSG------GGTTCTTCCEEECTTS--CCCBCGG-G-------GGCTTCCE
T ss_pred CCc-cCCcCc-ccc-CcccEEEccCCccCCCh------hhcCcccccEEECCCC--cCCCChH-H-------ccCCCCCE
Confidence 975 555553 333 99999999999877642 4789999999999998 7887753 2 24589999
Q ss_pred EeecCCCCcccchhhcCCCCCccEEEeCCCCCccccCC
Q 005813 591 LGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 591 L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
|++++ +.++.+ ..+..+++|+.|++++| .+...|.
T Consensus 155 L~L~~-N~i~~~-~~l~~l~~L~~L~l~~N-~~~~~~~ 189 (263)
T 1xeu_A 155 LDLHG-NEITNT-GGLTRLKKVNWIDLTGQ-KCVNEPV 189 (263)
T ss_dssp EECTT-SCCCBC-TTSTTCCCCCEEEEEEE-EEECCCE
T ss_pred EECCC-CcCcch-HHhccCCCCCEEeCCCC-cccCCcc
Confidence 99999 688887 57889999999999998 4555543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=3e-11 Score=131.30 Aligned_cols=182 Identities=23% Similarity=0.308 Sum_probs=117.7
Q ss_pred CcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCC
Q 005813 395 FLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGG 474 (676)
Q Consensus 395 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 474 (676)
+++.|++.++. ++. ++.. ++++|++|++++|.. ..+| ..+++|++|++++| .++.+|. +
T Consensus 60 ~L~~L~Ls~n~-L~~-lp~~-------------l~~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLN-LSS-LPDN-------------LPPQITVLEITQNAL-ISLP---ELPASLEYLDACDN-RLSTLPE-L 118 (571)
T ss_dssp TCSEEECCSSC-CSC-CCSC-------------CCTTCSEEECCSSCC-SCCC---CCCTTCCEEECCSS-CCSCCCC-C
T ss_pred CccEEEeCCCC-CCc-cCHh-------------HcCCCCEEECcCCCC-cccc---cccCCCCEEEccCC-CCCCcch-h
Confidence 78888887754 333 2221 136788888887653 3555 44778888888887 5666666 4
Q ss_pred CCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccc
Q 005813 475 LPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFS 554 (676)
Q Consensus 475 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 554 (676)
.. +|+.|++++|. +..+|. .+++|+.|++++|. ++.++. .+++|++|++++|.....+. +. +
T Consensus 119 ~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~------l~--~ 180 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE------LP--E 180 (571)
T ss_dssp CT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC------CC--T
T ss_pred hc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch------hh--C
Confidence 33 88888888865 444665 57788888888764 445653 56788888888887655221 22 7
Q ss_pred cccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhhcCCCCCccEEEeCCCC
Q 005813 555 SLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSSIVDLQNLTELYLADCP 621 (676)
Q Consensus 555 ~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 621 (676)
+|+.|++++| .+..+|. ... .....++.|+.|++++ +.++.+|..+..+++|+.|++++|+
T Consensus 181 ~L~~L~Ls~N--~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 181 SLEALDVSTN--LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp TCCEEECCSS--CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCEEECcCC--CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 7888888887 6776665 200 0011112238888888 6777888777778888888888874
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.25 E-value=3.4e-11 Score=114.95 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=117.1
Q ss_pred cEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEE
Q 005813 481 RTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLT 560 (676)
Q Consensus 481 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 560 (676)
+.++.+++ .+..+|..+. ++|+.|+++++..-...+..+..+++|++|++++|......+ ..+.++++|+.|+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~----~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP----DAFQGLRSLNSLV 86 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT----TTTTTCSSCCEEE
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH----HHhhCCcCCCEEE
Confidence 44555553 3566665443 689999999975443334467889999999999998876644 4689999999999
Q ss_pred EecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccch-hhcCCCCCccEEEeCCCCCccccCCCCC--ccccce
Q 005813 561 ISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLS-SSIVDLQNLTELYLADCPKLKYFPEKGL--PSSLLR 637 (676)
Q Consensus 561 l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~ 637 (676)
+++| .+..++... +..+++|+.|++++ +.++.++ ..+..+++|++|++++| .++.++...+ .++|++
T Consensus 87 Ls~N--~l~~l~~~~------f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 87 LYGN--KITELPKSL------FEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp CCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred CCCC--cCCccCHhH------ccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCE
Confidence 9999 888887643 34569999999999 7888875 48899999999999998 6888887544 689999
Q ss_pred eeecCChh
Q 005813 638 LYIVGCPL 645 (676)
Q Consensus 638 L~i~~c~~ 645 (676)
|++++||.
T Consensus 157 L~L~~N~~ 164 (220)
T 2v9t_B 157 MHLAQNPF 164 (220)
T ss_dssp EECCSSCE
T ss_pred EEeCCCCc
Confidence 99999873
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=2e-11 Score=115.60 Aligned_cols=129 Identities=23% Similarity=0.221 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccc-cccCCCCccc
Q 005813 429 PPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQQ 506 (676)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~ 506 (676)
++++++|+++++......+..+..+++|++|++++| .++.++. .+..+++|+.|++++|... .++. .+..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCE
Confidence 356777777776544333444566777777777776 4455544 3456677777777776533 3332 3566677777
Q ss_pred eeeeccCCCCCCC-cCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 507 LTIGIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 507 L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
|++++|. +..++ ..+..+++|++|++++|....... ..+..+++|+.|++++|
T Consensus 105 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 105 LALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSC
T ss_pred EEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecCC
Confidence 7777654 33333 234556666666666665544332 23556666666666665
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=5.9e-11 Score=112.34 Aligned_cols=105 Identities=23% Similarity=0.232 Sum_probs=49.6
Q ss_pred CCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccc-cccCCCCccceeeeccCCCCCCC-cCCCCCCccc
Q 005813 453 NTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQ 529 (676)
Q Consensus 453 ~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~ 529 (676)
.++|++|++++| .++.++. .+..+++|+.|++++|.. ..++. .+..+++|++|++++|. +..++ ..+..+++|+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence 345666666665 3344433 334556666666666432 23322 33555556666655543 22222 2234455555
Q ss_pred eeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 530 SLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 530 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
+|++++|....... ..+.++++|+.|++++|
T Consensus 104 ~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 104 ELALNTNQLQSLPD----GVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp EEECCSSCCCCCCT----TTTTTCTTCCEEECCSS
T ss_pred EEEcCCCcCcccCH----hHhccCCcCCEEECCCC
Confidence 55555554433222 12344455555555554
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=2e-11 Score=126.28 Aligned_cols=156 Identities=18% Similarity=0.194 Sum_probs=78.0
Q ss_pred ccceeeccCCCCccccCCC-CC-CCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceee
Q 005813 455 SLETISIDSCKNLVSFPEG-GL-PCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLN 532 (676)
Q Consensus 455 ~L~~L~l~~~~~l~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 532 (676)
.++.|++++| .++.++.. +. .+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|+
T Consensus 40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4555555555 34443332 22 455555555555442222223455555566666655432222222345556666666
Q ss_pred ccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCC
Q 005813 533 IWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQN 611 (676)
Q Consensus 533 l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~ 611 (676)
+++|......+ ..+.++++|+.|++++| .+..++... + .....+++|+.|++++ +.++.++. .+..++.
T Consensus 119 L~~N~i~~~~~----~~~~~l~~L~~L~L~~N--~l~~l~~~~--~-~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~ 188 (361)
T 2xot_A 119 LYNNHIVVVDR----NAFEDMAQLQKLYLSQN--QISRFPVEL--I-KDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPA 188 (361)
T ss_dssp CCSSCCCEECT----TTTTTCTTCCEEECCSS--CCCSCCGGG--T-C----CTTCCEEECCS-SCCCCCCHHHHHHSCH
T ss_pred CCCCcccEECH----HHhCCcccCCEEECCCC--cCCeeCHHH--h-cCcccCCcCCEEECCC-CCCCccCHHHhhhccH
Confidence 66665544333 24566666666666666 555555432 0 0002346666666666 55666553 4455554
Q ss_pred --ccEEEeCCCC
Q 005813 612 --LTELYLADCP 621 (676)
Q Consensus 612 --L~~L~l~~c~ 621 (676)
|+.|++++|+
T Consensus 189 ~~l~~l~l~~N~ 200 (361)
T 2xot_A 189 WVKNGLYLHNNP 200 (361)
T ss_dssp HHHTTEECCSSC
T ss_pred hhcceEEecCCC
Confidence 3666666653
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=8.4e-11 Score=112.24 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=85.5
Q ss_pred ceeeccCCCCccccCCCCCCCCCccEEEeecCcCccccc-ccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccC
Q 005813 457 ETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALP-KGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWG 535 (676)
Q Consensus 457 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~ 535 (676)
+.++++++ .++.+|..+. +.++.|++++|......+ ..+..+++|+.|++++|......+..+..+++|++|++++
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35555554 4445554332 345666666654222212 2345666666666666542222223456666666666666
Q ss_pred cchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccc-hhhcCCCCCccE
Q 005813 536 NMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERL-SSSIVDLQNLTE 614 (676)
Q Consensus 536 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~ 614 (676)
|....... ..+.++++|+.|++++| .+..++... +..+++|+.|++++ +.++.+ |..+..+++|++
T Consensus 91 N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 91 NRLENVQH----KMFKGLESLKTLMLRSN--RITCVGNDS------FIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp SCCCCCCG----GGGTTCSSCCEEECTTS--CCCCBCTTS------STTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCE
T ss_pred CccCccCH----hHhcCCcCCCEEECCCC--cCCeECHhH------cCCCccCCEEECCC-CcCCEECHHHhcCCCCCCE
Confidence 66554443 24667777777777776 666554322 23446777777777 566666 446777777777
Q ss_pred EEeCCCC
Q 005813 615 LYLADCP 621 (676)
Q Consensus 615 L~l~~c~ 621 (676)
|++++|+
T Consensus 158 L~L~~N~ 164 (220)
T 2v70_A 158 LNLLANP 164 (220)
T ss_dssp EECCSCC
T ss_pred EEecCcC
Confidence 8777774
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=1e-10 Score=127.04 Aligned_cols=94 Identities=28% Similarity=0.327 Sum_probs=45.4
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++|+.|++++|.. ..+|. +.. +|++|++++| .++.+|. .+++|+.|++++|. +..+|. .+++|+.|++
T Consensus 100 ~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRL-STLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCC-SCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCCC-CCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEEC
Confidence 4555555555432 22333 222 5555555555 3444444 34555555555544 233443 3455555555
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchh
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEI 539 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~ 539 (676)
++|. +..+|. +. ++|+.|++++|...
T Consensus 168 s~N~-L~~lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 168 RNNQ-LTFLPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSC-CSCCCC-CC--TTCCEEECCSSCCS
T ss_pred CCCC-CCCcch-hh--CCCCEEECcCCCCC
Confidence 5543 333443 22 55555555555444
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=5e-11 Score=117.20 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=115.4
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceee
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTI 509 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 509 (676)
++|+.|++++|. +..++ .+..+++|++|++++| .++.++. +..+++|+.|++++|. +..++. +.. ++|+.|++
T Consensus 41 ~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEEEC
T ss_pred CcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEEEc
Confidence 789999999875 45555 5788999999999998 6777766 7788999999999976 455554 233 89999999
Q ss_pred eccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCcc
Q 005813 510 GIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLT 589 (676)
Q Consensus 510 ~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~ 589 (676)
++|. +..++ .+..+++|+.|++++|...... .+..+++|+.|++++| .+..+.. +..+++|+
T Consensus 114 ~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~N--~i~~~~~--------l~~l~~L~ 175 (263)
T 1xeu_A 114 DNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHGN--EITNTGG--------LTRLKKVN 175 (263)
T ss_dssp CSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTTS--CCCBCTT--------STTCCCCC
T ss_pred cCCc-cCCCh-hhcCcccccEEECCCCcCCCCh------HHccCCCCCEEECCCC--cCcchHH--------hccCCCCC
Confidence 9974 55555 5888999999999999876653 3788999999999998 7776622 23558999
Q ss_pred EEeecCCCCcccch
Q 005813 590 SLGISNFPNLERLS 603 (676)
Q Consensus 590 ~L~l~~c~~l~~l~ 603 (676)
.|++++ +.+...|
T Consensus 176 ~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 176 WIDLTG-QKCVNEP 188 (263)
T ss_dssp EEEEEE-EEEECCC
T ss_pred EEeCCC-CcccCCc
Confidence 999999 5666555
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=3.7e-11 Score=109.47 Aligned_cols=132 Identities=18% Similarity=0.182 Sum_probs=60.2
Q ss_pred CCCcceEEEcCCCCh-hhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccce
Q 005813 429 PPSLKSIRVGGCSKL-ESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQL 507 (676)
Q Consensus 429 ~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 507 (676)
|++++.|++++|... ..++..+..+++|++|++++|. ++.+ ..+..+++|+.|++++|.....+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 345555555554432 2344444555555555555552 3333 334445555555555554333344444445555555
Q ss_pred eeeccCCCCCCC--cCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 508 TIGIGGALPSLE--EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 508 ~l~~c~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
++++|. +..++ ..+..+++|++|++++|+........ ...+..+++|+.|++++|
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR-ESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH-HHHHTTCSSCCEETTEET
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH-HHHHHhCccCcEecCCCC
Confidence 555542 33322 23444455555555555443322100 012344445555555444
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=5.6e-11 Score=108.29 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=77.5
Q ss_pred cCCccceeeccCCCCcc--ccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccc
Q 005813 452 NNTSLETISIDSCKNLV--SFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQ 529 (676)
Q Consensus 452 ~~~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 529 (676)
..++|++|++++|. +. .+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.....++.
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~--------- 89 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDM--------- 89 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCH---------
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHH---------
Confidence 35677777777773 44 555555666666666666654 3333 3445555556665555433222331
Q ss_pred eeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh----h
Q 005813 530 SLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS----S 605 (676)
Q Consensus 530 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~----~ 605 (676)
.+.++++|+.|++++| .+..++.. ..+..+++|+.|++++ +.+..++. .
T Consensus 90 -------------------~~~~l~~L~~L~Ls~N--~l~~~~~~-----~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~ 142 (168)
T 2ell_A 90 -------------------LAEKLPNLTHLNLSGN--KLKDISTL-----EPLKKLECLKSLDLFN-CEVTNLNDYRESV 142 (168)
T ss_dssp -------------------HHHHCTTCCEEECBSS--SCCSSGGG-----GGGSSCSCCCEEECCS-SGGGTSTTHHHHH
T ss_pred -------------------HHhhCCCCCEEeccCC--ccCcchhH-----HHHhcCCCCCEEEeeC-CcCcchHHHHHHH
Confidence 2344666666666665 55554320 0112336666666666 45665554 5
Q ss_pred cCCCCCccEEEeCCCCCccccCC
Q 005813 606 IVDLQNLTELYLADCPKLKYFPE 628 (676)
Q Consensus 606 ~~~~~~L~~L~l~~c~~l~~i~~ 628 (676)
+..+++|++|++++| .++++|+
T Consensus 143 ~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 143 FKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp HTTCSSCCEETTEET-TSCBCCS
T ss_pred HHhCccCcEecCCCC-Chhhccc
Confidence 677888888888887 4555554
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=1.7e-10 Score=117.63 Aligned_cols=246 Identities=14% Similarity=0.105 Sum_probs=125.4
Q ss_pred cCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCCcc-cccccccCCCCCceEeecCCCCCCCCCC-
Q 005813 230 DICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKGLV-KLPQSSLSLSSLREIEICSCHSLVSFPE- 307 (676)
Q Consensus 230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~- 307 (676)
.++++++|++.+. +.. . .+..+...+++|++|+++++.... ... -..++.++.+.+..+ .++.
T Consensus 23 ~~~~l~~L~l~g~--i~~---~----~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~----~I~~~ 87 (329)
T 3sb4_A 23 EANSITHLTLTGK--LNA---E----DFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMAN----FVPAY 87 (329)
T ss_dssp HHHHCSEEEEEEE--ECH---H----HHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTT----EECTT
T ss_pred hhCceeEEEEecc--ccH---H----HHHHHHHhhccCeEEecCcceeEEecCc--ccccccccccccccc----ccCHH
Confidence 5668999999873 221 1 123332235899999999875330 111 112222344444332 2333
Q ss_pred -ccC--------CCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCCCCCcEEEEeccCCccccc
Q 005813 308 -VAL--------PSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVPSSLKLLTIWHCDNIRTLT 378 (676)
Q Consensus 308 -~~~--------~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~ 378 (676)
+.. +++|+.+.+.+ . ++.++...| .++++|+++++.+ +.++.++...+........+..-.......
T Consensus 88 aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF-~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 88 AFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAF-KGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp TTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTT-TTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred HhcccccccccccCCCcEEECCc-c-ccchhHHHh-hcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhc
Confidence 223 67788888877 3 667766655 6778888888876 455566655554333222222111000000
Q ss_pred cccccccccCCccccCCcC-eeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccc
Q 005813 379 VEEGIQCSSGRRYTSSFLE-ELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLE 457 (676)
Q Consensus 379 ~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 457 (676)
. .....+.+..+..|+ .+.+.....+...+... ..-+.++..+.+.+.-...........+++|+
T Consensus 164 ~---~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~-----------~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~ 229 (329)
T 3sb4_A 164 K---NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA-----------GLQPRDINFLTIEGKLDNADFKLIRDYMPNLV 229 (329)
T ss_dssp S---TTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT-----------TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCC
T ss_pred c---ccccccccccccccceeEEecCCCcHHHHHhhc-----------ccCccccceEEEeeeecHHHHHHHHHhcCCCe
Confidence 0 000001111112222 22222222111101000 01135667777766433333333333478888
Q ss_pred eeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccc-cccCCCCcc-ceeeec
Q 005813 458 TISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQ-QLTIGI 511 (676)
Q Consensus 458 ~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~-~L~l~~ 511 (676)
++++.+| .++.++. .+..|++|+.+++.++ ++.++. .|.++++|+ .+.+.+
T Consensus 230 ~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 230 SLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred EEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 9988877 4666665 5677888888888775 555543 567777777 777765
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=1.6e-12 Score=142.04 Aligned_cols=189 Identities=14% Similarity=0.065 Sum_probs=131.1
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCCC-------------CccccCCCCCCCCCccEEE-eecCcCccccc
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCK-------------NLVSFPEGGLPCAKLRTLA-ISNCKRLEALP 495 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~-------------~l~~~~~~~~~~~~L~~L~-l~~~~~~~~~~ 495 (676)
++++.|+++++ .++.+|..++.+++|++|+++++. .....|..+..+++|+.|+ ++.+ .+..++
T Consensus 349 ~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~ 426 (567)
T 1dce_A 349 EQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDLR 426 (567)
T ss_dssp TTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHHH
T ss_pred ccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchhh
Confidence 67888888875 467889999999999999987653 2222333455567777777 3332 122111
Q ss_pred c------ccc--CCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCc
Q 005813 496 K------GLH--NLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDD 567 (676)
Q Consensus 496 ~------~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 567 (676)
. .+. ....|+.|++++| .+..+|. ++.+++|+.|++++|.....+ ..+.++++|+.|++++| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp-----~~~~~l~~L~~L~Ls~N--~ 497 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALP-----PALAALRCLEVLQASDN--A 497 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCC-----GGGGGCTTCCEEECCSS--C
T ss_pred hhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccc-----hhhhcCCCCCEEECCCC--C
Confidence 1 011 1135888888886 4566774 888888999999988776432 25788889999999988 7
Q ss_pred ccccccccccccCCCCCCCCccEEeecCCCCcccc--hhhcCCCCCccEEEeCCCCCccccCCCCC-----ccccceee
Q 005813 568 MVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERL--SSSIVDLQNLTELYLADCPKLKYFPEKGL-----PSSLLRLY 639 (676)
Q Consensus 568 l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~i~~~~l-----~~~L~~L~ 639 (676)
+..+| .. ..+++|+.|++++ +.++.+ |..+..+++|+.|++++| .++.+|+... .++|+.|+
T Consensus 498 l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 498 LENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 77776 32 2448899999988 678877 778888899999999987 5777665321 46777764
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=2.4e-10 Score=101.68 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=25.7
Q ss_pred CCccceeeccCCCCcc--ccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeecc
Q 005813 453 NTSLETISIDSCKNLV--SFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIG 512 (676)
Q Consensus 453 ~~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 512 (676)
.++|++|++++|. +. .+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSS
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCC
Confidence 3455666666552 33 444444445555555555543 2222 23334444444444443
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.02 E-value=7.8e-10 Score=105.47 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=62.8
Q ss_pred CCcceEEEcCCCChhhHH-HhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCccce
Q 005813 430 PSLKSIRVGGCSKLESIA-ERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQL 507 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 507 (676)
..++.|+++++......+ ..+..+++|++|++++| .++.++. .+..+++|+.|++++|......+..+..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 445566666544322211 23455666666666665 3444333 45555666666666654333223335555555555
Q ss_pred eeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 508 TIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 508 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
++++|......+..+..+++|++|++++|......+ ..+..+++|+.|++++|
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP----GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT----TTTTTCTTCCEEECCSC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH----HHhcCCCCCCEEEecCc
Confidence 555544333333344445555555555554443322 23444455555555544
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.01 E-value=4.3e-10 Score=100.07 Aligned_cols=125 Identities=19% Similarity=0.110 Sum_probs=66.2
Q ss_pred CCccEEEeecCcCc-ccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccc
Q 005813 478 AKLRTLAISNCKRL-EALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSL 556 (676)
Q Consensus 478 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L 556 (676)
++|+.|++++|... ..+|..+..+++|+.|++++|. +..+ ..++.+++|++|++++|......+ ..+.++++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLE----VLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTH----HHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHH----HHhhhCCCC
Confidence 45666666665433 2455555556666666666553 3333 345556666666666665544222 123445666
Q ss_pred cEEEEecCCCcccccc--cccccccCCCCCCCCccEEeecCCCCcccchh----hcCCCCCccEEEeC
Q 005813 557 RRLTISRCDDDMVSFP--LEDKRLGTTLPLPASLTSLGISNFPNLERLSS----SIVDLQNLTELYLA 618 (676)
Q Consensus 557 ~~L~l~~n~~~l~~i~--~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~~L~~L~l~ 618 (676)
+.|++++| .+..++ .... .+++|+.|++++ +.++.++. .+..+++|++|+++
T Consensus 91 ~~L~ls~N--~i~~~~~~~~~~-------~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGN--KIKDLSTIEPLK-------KLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTS--CCCSHHHHGGGG-------GCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCC--cCCChHHHHHHh-------hCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 66666665 444433 1111 235666666666 35555543 45566666666655
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=8.9e-10 Score=101.07 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=86.7
Q ss_pred cCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccc-cc
Q 005813 499 HNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLED-KR 577 (676)
Q Consensus 499 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~-~~ 577 (676)
..+++|+.|++++|. +..++......++|++|++++|..... ..+..+++|+.|++++| .+..++... ..
T Consensus 16 ~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N--~l~~~~~~~~~~ 86 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNN--RICRIGEGLDQA 86 (176)
T ss_dssp ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSS--CCCEECSCHHHH
T ss_pred CCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCC--cccccCcchhhc
Confidence 345555666666542 333442223334677777777665543 14677788888888887 677666433 22
Q ss_pred ccCCCCCCCCccEEeecCCCCcccchh--hcCCCCCccEEEeCCCCCccccCCC---CC--ccccceeeecCChhhHH
Q 005813 578 LGTTLPLPASLTSLGISNFPNLERLSS--SIVDLQNLTELYLADCPKLKYFPEK---GL--PSSLLRLYIVGCPLIEE 648 (676)
Q Consensus 578 l~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~i~~~---~l--~~~L~~L~i~~c~~l~~ 648 (676)
+++|+.|++++ +.++.+|. .+..+++|+.|++++| .+..+|.. .+ .++|++|++++|+.-++
T Consensus 87 -------l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 87 -------LPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp -------CTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred -------CCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 37888888888 67777776 6788889999999988 46777653 12 67899999998875443
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=2e-09 Score=109.66 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=32.1
Q ss_pred CCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCccce
Q 005813 453 NTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQL 507 (676)
Q Consensus 453 ~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 507 (676)
+++|+++++.+ .++.++. .+..|++|+.+++.++.....-+..|.++.++..+
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEe
Confidence 78888888876 4565554 56678888888887765332223344454444444
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.92 E-value=9.4e-08 Score=99.86 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=28.9
Q ss_pred cCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccch
Q 005813 196 TEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVA 250 (676)
Q Consensus 196 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 250 (676)
+..++..+.+|+++.+.. .++. +....+..|++|+.+++.. .++.+..
T Consensus 63 g~~AF~~c~~L~~i~lp~--~i~~---I~~~aF~~c~~L~~i~lp~--~l~~I~~ 110 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS--TVRE---IGEFAFENCSKLEIINIPD--SVKMIGR 110 (394)
T ss_dssp CTTTTTTCTTEEEEECCT--TCCE---ECTTTTTTCTTCCEECCCT--TCCEECT
T ss_pred HHHHhhCCCCceEEEeCC--CccC---cchhHhhCCCCCcEEEeCC--CceEccc
Confidence 345666677777777753 2333 5556667777777777753 3444443
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=3.6e-08 Score=102.69 Aligned_cols=271 Identities=11% Similarity=0.141 Sum_probs=154.8
Q ss_pred CCCCCccEEeecccccccccccccCC-CCCcEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccC
Q 005813 335 DTNSSLEILHIYGCRSLTYIAAVQVP-SSLKLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSK 413 (676)
Q Consensus 335 ~~l~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 413 (676)
..+..++++.+-+ .++.++...+. .+|+.+.+.. +++.+... .+.. .+|+++.+.. .+.. ++.
T Consensus 110 ~~~~~l~~i~ip~--~i~~I~~~aF~~~~L~~i~l~~--~i~~I~~~--------aF~~-~~L~~i~lp~--~l~~-I~~ 173 (401)
T 4fdw_A 110 EILKGYNEIILPN--SVKSIPKDAFRNSQIAKVVLNE--GLKSIGDM--------AFFN-STVQEIVFPS--TLEQ-LKE 173 (401)
T ss_dssp EECSSCSEEECCT--TCCEECTTTTTTCCCSEEECCT--TCCEECTT--------TTTT-CCCCEEECCT--TCCE-ECS
T ss_pred EecCCccEEEECC--ccCEehHhhcccCCccEEEeCC--CccEECHH--------hcCC-CCceEEEeCC--CccE-ehH
Confidence 4457777777753 56666655443 3466666543 35554421 1111 2567666654 3333 222
Q ss_pred CCcchhhhccccCCCCCCcceEEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcc
Q 005813 414 NELPATLESLEVGNLPPSLKSIRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLE 492 (676)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~ 492 (676)
.++.. ..+|+.+++..+. +..++...-.+.+|+.+.+..+ ++.++. .+..|++|+.+.+..+ +.
T Consensus 174 ~aF~~----------c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~ 238 (401)
T 4fdw_A 174 DIFYY----------CYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VS 238 (401)
T ss_dssp STTTT----------CTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CC
T ss_pred HHhhC----------cccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--cc
Confidence 22211 2567777776543 3333322223567777777643 555544 5566777777777653 34
Q ss_pred cccc-cccCCCCccceeeeccCCCCCC-CcCCCCCCccceeeccCcchh-----hhhhhhccccccccccccEEEEecCC
Q 005813 493 ALPK-GLHNLTSLQQLTIGIGGALPSL-EEEDDLPTNLQSLNIWGNMEI-----WKSMIERGRGFHRFSSLRRLTISRCD 565 (676)
Q Consensus 493 ~~~~-~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~l~~l~~L~~L~l~~n~ 565 (676)
.++. .|.+ .+|+.+.+.. .+..+ ...+..+++|+.+++.++... .... ..|.+|++|+.+.+.+
T Consensus 239 ~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~----~aF~~c~~L~~l~l~~-- 309 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP----YCLEGCPKLARFEIPE-- 309 (401)
T ss_dssp EECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT----TTTTTCTTCCEECCCT--
T ss_pred Ccccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH----HHhhCCccCCeEEeCC--
Confidence 4433 3444 5777777753 23333 235667788888888776543 1111 4577888888888875
Q ss_pred CcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCCCccccCCCCC---ccccceeeec
Q 005813 566 DDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCPKLKYFPEKGL---PSSLLRLYIV 641 (676)
Q Consensus 566 ~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~~~~l---~~~L~~L~i~ 641 (676)
.+..|+... |..+++|+.+.+.. +++.+.. .|..+ +|+++++.++ .+..++...+ +..++.|++-
T Consensus 310 -~i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 310 -SIRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp -TCCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred -ceEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeC
Confidence 466665433 55667888888854 4777755 67777 8888888886 4566655433 4577778777
Q ss_pred CChhhHHHHhhcCCccccc
Q 005813 642 GCPLIEEKCRKDGGQYWLE 660 (676)
Q Consensus 642 ~c~~l~~~~~~~~~~~~~~ 660 (676)
... .+.... +..|..
T Consensus 379 ~~~--~~~y~~--a~~W~~ 393 (401)
T 4fdw_A 379 AES--VEKYKN--ANGWRD 393 (401)
T ss_dssp GGG--HHHHHH--STTGGG
T ss_pred HHH--HHHhhh--ccchhh
Confidence 643 222222 345766
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=6.8e-08 Score=100.63 Aligned_cols=258 Identities=13% Similarity=0.102 Sum_probs=162.9
Q ss_pred CCCCCceEeecCCCCCCCCCCccC-CCCccEEeeccccCcCcCchhhccCCCCCccEEeecccccccccccccCC--CCC
Q 005813 287 SLSSLREIEICSCHSLVSFPEVAL-PSKLRKIEIRYCDALKSLPEAWMCDTNSSLEILHIYGCRSLTYIAAVQVP--SSL 363 (676)
Q Consensus 287 ~l~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--~~L 363 (676)
.+..++.+.+-+ .++.++..++ -.+|+.+.+.++ ++.++...+ .+ .+|+++.+.. .++.++...+. .+|
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~aF-~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFRNSQIAKVVLNEG--LKSIGDMAF-FN-STVQEIVFPS--TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTTTCCCSEEECCTT--CCEECTTTT-TT-CCCCEEECCT--TCCEECSSTTTTCTTC
T ss_pred ecCCccEEEECC--ccCEehHhhcccCCccEEEeCCC--ccEECHHhc-CC-CCceEEEeCC--CccEehHHHhhCcccC
Confidence 346677777754 3555555433 346888887654 666666554 23 3577777764 45555544332 334
Q ss_pred cEEEEeccCCccccccccccccccCCccccCCcCeeeeecCCCccccccCCCcchhhhccccCCCCCCcceEEEcCCCCh
Q 005813 364 KLLTIWHCDNIRTLTVEEGIQCSSGRRYTSSFLEELHIYCCDSLTCIFSKNELPATLESLEVGNLPPSLKSIRVGGCSKL 443 (676)
Q Consensus 364 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 443 (676)
+.+++.. .+++.++ ...+. ..+|+.+.+... +
T Consensus 183 ~~l~l~~-n~l~~I~----------------------------------~~aF~-----------~~~L~~l~lp~~--l 214 (401)
T 4fdw_A 183 KKADLSK-TKITKLP----------------------------------ASTFV-----------YAGIEEVLLPVT--L 214 (401)
T ss_dssp CEEECTT-SCCSEEC----------------------------------TTTTT-----------TCCCSEEECCTT--C
T ss_pred CeeecCC-CcceEec----------------------------------hhhEe-----------ecccCEEEeCCc--h
Confidence 5444433 1222222 11110 135566665432 2
Q ss_pred hh-HHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccc-cccccCCCCccceeeeccCCC-----C
Q 005813 444 ES-IAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEAL-PKGLHNLTSLQQLTIGIGGAL-----P 516 (676)
Q Consensus 444 ~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l-----~ 516 (676)
.. -..+|..+++|+.+++..+ ++.++.....-.+|+.+.+... +..+ ...|.+|++|+.+.+.++... .
T Consensus 215 ~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 215 KEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp CEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred heehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 22 2346788999999999874 6666664444479999999542 4555 347789999999999875432 1
Q ss_pred CCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCC
Q 005813 517 SLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNF 596 (676)
Q Consensus 517 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c 596 (676)
.-...+..+++|+.+++.++ ...... ..|.+|++|+.+.|.. ++..|... +|..+ +|+.+++.+
T Consensus 291 I~~~aF~~c~~L~~l~l~~~-i~~I~~----~aF~~c~~L~~l~lp~---~l~~I~~~------aF~~~-~L~~l~l~~- 354 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPES-IRILGQ----GLLGGNRKVTQLTIPA---NVTQINFS------AFNNT-GIKEVKVEG- 354 (401)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECT----TTTTTCCSCCEEEECT---TCCEECTT------SSSSS-CCCEEEECC-
T ss_pred ECHHHhhCCccCCeEEeCCc-eEEEhh----hhhcCCCCccEEEECc---cccEEcHH------hCCCC-CCCEEEEcC-
Confidence 22346788999999999853 322222 4789999999999977 46666653 35566 899999999
Q ss_pred CCcccchh-hcCCCC-CccEEEeCCC
Q 005813 597 PNLERLSS-SIVDLQ-NLTELYLADC 620 (676)
Q Consensus 597 ~~l~~l~~-~~~~~~-~L~~L~l~~c 620 (676)
+.+..++. .+..++ +++.|++-..
T Consensus 355 n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 355 TTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCCcccccccccCCCCCccEEEeCHH
Confidence 66766655 566664 7888888764
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=7e-12 Score=136.92 Aligned_cols=175 Identities=18% Similarity=0.182 Sum_probs=132.8
Q ss_pred ccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCc-------------CcccccccccCCCCcccee-eeccCCCC
Q 005813 451 DNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCK-------------RLEALPKGLHNLTSLQQLT-IGIGGALP 516 (676)
Q Consensus 451 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~c~~l~ 516 (676)
..+++|+.|+++++ .++.+|..+..+++|+.|+++++. .....|..++.+++|+.|+ ++.+ .+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 45889999999998 678888888889999999986653 2333445567778888887 3322 111
Q ss_pred CCCc------CCC--CCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCc
Q 005813 517 SLEE------EDD--LPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASL 588 (676)
Q Consensus 517 ~~~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L 588 (676)
.++. .+. ....|+.|++++|.....+ .+.++++|+.|++++| .+..+|.....+ ++|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp------~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l-------~~L 488 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC------HLEQLLLVTHLDLSHN--RLRALPPALAAL-------RCL 488 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC------CGGGGTTCCEEECCSS--CCCCCCGGGGGC-------TTC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCc------CccccccCcEeecCcc--cccccchhhhcC-------CCC
Confidence 1110 000 1236899999999876632 3889999999999999 888888765444 999
Q ss_pred cEEeecCCCCcccchhhcCCCCCccEEEeCCCCCccccC-CCCC--ccccceeeecCChh
Q 005813 589 TSLGISNFPNLERLSSSIVDLQNLTELYLADCPKLKYFP-EKGL--PSSLLRLYIVGCPL 645 (676)
Q Consensus 589 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~i~-~~~l--~~~L~~L~i~~c~~ 645 (676)
+.|++++ +.++.+| .+..+++|++|++++| .++.++ ...+ .++|+.|++++|+.
T Consensus 489 ~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 489 EVLQASD-NALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CEEECCS-SCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CEEECCC-CCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 9999999 7899999 8999999999999998 688883 3233 68999999999973
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.89 E-value=1.3e-09 Score=100.06 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=68.8
Q ss_pred hccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccc
Q 005813 450 LDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQ 529 (676)
Q Consensus 450 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 529 (676)
+..+++|++|++++| .++.++......++|+.|++++|. +..+ ..+..+++|++|++++
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~------------------ 73 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNN------------------ 73 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCS------------------
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCC------------------
Confidence 344667777777776 444444322222366666666654 2222 2344445555555554
Q ss_pred eeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhh----
Q 005813 530 SLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSS---- 605 (676)
Q Consensus 530 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~---- 605 (676)
|.....+. ..+..+++|+.|++++| .+..++... .+..+++|+.|++++ +.+..+|..
T Consensus 74 ------N~l~~~~~----~~~~~l~~L~~L~L~~N--~i~~~~~~~-----~l~~l~~L~~L~l~~-N~i~~~~~~~~~~ 135 (176)
T 1a9n_A 74 ------NRICRIGE----GLDQALPDLTELILTNN--SLVELGDLD-----PLASLKSLTYLCILR-NPVTNKKHYRLYV 135 (176)
T ss_dssp ------SCCCEECS----CHHHHCTTCCEEECCSC--CCCCGGGGG-----GGGGCTTCCEEECCS-SGGGGSTTHHHHH
T ss_pred ------CcccccCc----chhhcCCCCCEEECCCC--cCCcchhhH-----hhhcCCCCCEEEecC-CCCCCcHhHHHHH
Confidence 44332221 12355566666666665 555544300 011235666666666 455555543
Q ss_pred cCCCCCccEEEeCCCC
Q 005813 606 IVDLQNLTELYLADCP 621 (676)
Q Consensus 606 ~~~~~~L~~L~l~~c~ 621 (676)
+..+++|+.|++++|.
T Consensus 136 ~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 136 IYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCSEETTEECC
T ss_pred HHHCCccceeCCCcCC
Confidence 6677777777777763
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.86 E-value=8.1e-09 Score=96.05 Aligned_cols=100 Identities=19% Similarity=0.176 Sum_probs=53.9
Q ss_pred ceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCc
Q 005813 457 ETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGN 536 (676)
Q Consensus 457 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~ 536 (676)
+.++++++ .++.+|..+. ++|+.|+++++. +..+|..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666665 5666665432 477777777754 4456666666777777777765433322233444555555555555
Q ss_pred chhhhhhhhccccccccccccEEEEecC
Q 005813 537 MEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 537 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
......+ ..+.++++|+.|++++|
T Consensus 89 ~l~~i~~----~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 89 RLRCIPP----RTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCCBCCT----TTTTTCTTCCEEECCSS
T ss_pred ccCEeCH----HHhCCCCCCCEEECCCC
Confidence 4443332 12444444444444444
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.83 E-value=1.8e-08 Score=93.65 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCccceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCC
Q 005813 502 TSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTT 581 (676)
Q Consensus 502 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~ 581 (676)
++|++|+++++. +..++..+..+++|++|++++|....... ..+.++++|+.|++++| .+..++...
T Consensus 31 ~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N--~l~~i~~~~------ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSN----QSFSNMTQLLTLILSYN--RLRCIPPRT------ 97 (193)
T ss_dssp TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCBCCTTT------
T ss_pred CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCH----hHccCCCCCCEEECCCC--ccCEeCHHH------
Confidence 355555555542 33444445555555555555555544333 23555555555555555 455444321
Q ss_pred CCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCC
Q 005813 582 LPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCP 621 (676)
Q Consensus 582 ~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 621 (676)
+..+++|+.|++++ +.++.++. .+..+++|+.|++++|+
T Consensus 98 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 22335555555555 45555554 34555555555555553
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.82 E-value=1.7e-08 Score=92.47 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=57.4
Q ss_pred cEEEeecCcCcccccccccCCCCccceeeeccCCCCCCC-cCCCCCCccceeeccCcchhhhhhhhccccccccccccEE
Q 005813 481 RTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRL 559 (676)
Q Consensus 481 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L 559 (676)
+.++++++. +..+|..+ .++|++|+++++. +..++ ..+..+++|++|++++|....... ..+.++++|+.|
T Consensus 10 ~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L 81 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPD----GVFDKLTKLTIL 81 (177)
T ss_dssp TEEECCSSC-CSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEE
T ss_pred CEEEecCCC-CccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeCh----hHccCCCccCEE
Confidence 455555532 44444322 2466666666654 22332 223455555555555554443322 124455555555
Q ss_pred EEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchhh-cCCCCCccEEEeCCC
Q 005813 560 TISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSSS-IVDLQNLTELYLADC 620 (676)
Q Consensus 560 ~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c 620 (676)
++++| .+..++... +..+++|+.|++++ +.++.++.. +..+++|++|++++|
T Consensus 82 ~l~~N--~l~~~~~~~------~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 82 YLHEN--KLQSLPNGV------FDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCC--CccccCHHH------hhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCC
Confidence 55555 444443321 12234555555555 344444442 344555555555554
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.81 E-value=2e-07 Score=97.28 Aligned_cols=170 Identities=14% Similarity=0.102 Sum_probs=109.8
Q ss_pred hhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccc-cccccCCCCccceeeeccCCCCCCCcCCCCCCc
Q 005813 449 RLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEAL-PKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTN 527 (676)
Q Consensus 449 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 527 (676)
.+..+..|+.+.+... ...+........+|+.+.+... ...+ ...+..+..++.+.+.... .......+..++.
T Consensus 203 ~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~ 277 (394)
T 4fs7_A 203 CFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSG 277 (394)
T ss_dssp TTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTT
T ss_pred hhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCc-ceeeccccccccc
Confidence 3556677777666543 2333344445567777777542 2222 2245677788888776532 2222234566777
Q ss_pred cceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hc
Q 005813 528 LQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SI 606 (676)
Q Consensus 528 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~ 606 (676)
++.+......... ..+..+.+|+.+.+.+ .+..|+.. ++..+.+|+.+++.. .++.|.. .|
T Consensus 278 l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~---~i~~I~~~------aF~~c~~L~~i~lp~--~v~~I~~~aF 339 (394)
T 4fs7_A 278 LKKVIYGSVIVPE-------KTFYGCSSLTEVKLLD---SVKFIGEE------AFESCTSLVSIDLPY--LVEEIGKRSF 339 (394)
T ss_dssp CCEEEECSSEECT-------TTTTTCTTCCEEEECT---TCCEECTT------TTTTCTTCCEECCCT--TCCEECTTTT
T ss_pred cceeccCceeecc-------cccccccccccccccc---ccceechh------hhcCCCCCCEEEeCC--cccEEhHHhc
Confidence 7777766553222 3577888899888877 46666543 355668888888864 5777765 78
Q ss_pred CCCCCccEEEeCCCCCccccCCCCC--ccccceeeecCC
Q 005813 607 VDLQNLTELYLADCPKLKYFPEKGL--PSSLLRLYIVGC 643 (676)
Q Consensus 607 ~~~~~L~~L~l~~c~~l~~i~~~~l--~~~L~~L~i~~c 643 (676)
.++++|+.+.+... ++.|++.++ +++|+.+++...
T Consensus 340 ~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 340 RGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 88899999988763 788877666 678888888653
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.79 E-value=8.2e-09 Score=96.00 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=14.6
Q ss_pred CCCCccEEEeecCcCcccccccccCCCCccceeeecc
Q 005813 476 PCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIG 512 (676)
Q Consensus 476 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 512 (676)
.+++|+.|++++|......|..+..+++|++|++++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3444444444443322222333344444444444443
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.79 E-value=2.5e-08 Score=92.65 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=51.8
Q ss_pred ceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccc--cccCCCCccceeeeccCCCCCCCcCCCCCCccceeecc
Q 005813 457 ETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPK--GLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIW 534 (676)
Q Consensus 457 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 534 (676)
++++++++ .++.+|..+. ++|+.|+++++. +..++. .+..+++|++|++++|......+..+..+++|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56666666 5566665443 267777777754 333332 25666667777766654333334344445555555555
Q ss_pred CcchhhhhhhhccccccccccccEEEEecC
Q 005813 535 GNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
+|......+ ..+.++++|+.|++++|
T Consensus 87 ~N~l~~~~~----~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 87 ENKIKEISN----KMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp SCCCCEECS----SSSTTCTTCCEEECCSS
T ss_pred CCcCCccCH----HHhcCCCCCCEEECCCC
Confidence 554433322 12344444444444444
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.78 E-value=3e-08 Score=90.81 Aligned_cols=86 Identities=23% Similarity=0.284 Sum_probs=35.9
Q ss_pred CccEEEeecCcCccccc-ccccCCCCccceeeeccCCCCCCC-cCCCCCCccceeeccCcchhhhhhhhccccccccccc
Q 005813 479 KLRTLAISNCKRLEALP-KGLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSL 556 (676)
Q Consensus 479 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L 556 (676)
+|+.|+++++.. ..++ ..+..+++|++|++++|. +..++ ..+..+++|++|++++|....... ..+.++++|
T Consensus 29 ~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L 102 (177)
T 2o6r_A 29 SATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPN----GVFDKLTQL 102 (177)
T ss_dssp TCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTC
T ss_pred CCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCH----HHhhCCccc
Confidence 455555554432 2222 223444455555554442 22222 123444455555555544433222 123444455
Q ss_pred cEEEEecCCCcccccc
Q 005813 557 RRLTISRCDDDMVSFP 572 (676)
Q Consensus 557 ~~L~l~~n~~~l~~i~ 572 (676)
+.|++++| .+..++
T Consensus 103 ~~L~l~~N--~l~~~~ 116 (177)
T 2o6r_A 103 KELALDTN--QLKSVP 116 (177)
T ss_dssp CEEECCSS--CCSCCC
T ss_pred CEEECcCC--cceEeC
Confidence 55555544 444443
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.76 E-value=6.5e-09 Score=117.17 Aligned_cols=191 Identities=18% Similarity=0.145 Sum_probs=90.3
Q ss_pred CCcceEEEcCCCChhhHHHhhccCCccceeeccCC----CCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCcc
Q 005813 430 PSLKSIRVGGCSKLESIAERLDNNTSLETISIDSC----KNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQ 505 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~----~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 505 (676)
+.++.|++.++.. ...+..+....+|+.+.|... ..+...+..+..++.|+.|+|++|. +..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~-~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGK-DEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCC-CcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCC
Confidence 5577777766443 333333333344444444332 1233344566677888888888866 446776667888888
Q ss_pred ceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCC
Q 005813 506 QLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLP 585 (676)
Q Consensus 506 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~ 585 (676)
+|++++|. +..+|..++.+++|++|+|++|..... + ..+.++++|+.|+|++| .+..+|.... .+
T Consensus 251 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p----~~~~~l~~L~~L~L~~N--~l~~lp~~~~-------~l 315 (727)
T 4b8c_D 251 RLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSL-P----AELGSCFQLKYFYFFDN--MVTTLPWEFG-------NL 315 (727)
T ss_dssp CCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSC-C----SSGGGGTTCSEEECCSS--CCCCCCSSTT-------SC
T ss_pred EEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCcc-C----hhhcCCCCCCEEECCCC--CCCccChhhh-------cC
Confidence 88888864 446776777888888888888876633 2 25777888888888887 6777765433 33
Q ss_pred CCccEEeecCCCCccc-chhhcCCCC-CccEEEeCCCCCccccCCCCCccccceeeecCC
Q 005813 586 ASLTSLGISNFPNLER-LSSSIVDLQ-NLTELYLADCPKLKYFPEKGLPSSLLRLYIVGC 643 (676)
Q Consensus 586 ~~L~~L~l~~c~~l~~-l~~~~~~~~-~L~~L~l~~c~~l~~i~~~~l~~~L~~L~i~~c 643 (676)
++|+.|++++ +.++. +|..+.... .+..+++++|. ++. .++..|+.|++.++
T Consensus 316 ~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~-l~~----~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 316 CNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNR-PEI----PLPHERRFIEINTD 369 (727)
T ss_dssp TTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCC-CCC----CCCCC---------
T ss_pred CCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCc-ccC----cCccccceeEeecc
Confidence 7888888888 55653 443333221 12235666653 221 23456777777766
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=4.9e-10 Score=105.00 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=22.7
Q ss_pred CCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCCCCccceeeccCcc
Q 005813 477 CAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNM 537 (676)
Q Consensus 477 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~ 537 (676)
+++|+.|++++|. +..+| .+..+++|++|++++|. +..++.....+++|++|++++|.
T Consensus 47 l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 47 LKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp TTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE
T ss_pred CCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc
Confidence 3444444444432 22233 33444444444444432 22333222233444444444443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.69 E-value=3.9e-09 Score=119.01 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=103.8
Q ss_pred hHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcCCCC
Q 005813 445 SIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEEDDL 524 (676)
Q Consensus 445 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 524 (676)
..+..+..+++|+.|++++| .+..++..+..+++|+.|+|++|. +..+|..+..+++|+.|++++|. +..+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence 44667888999999999999 566888777789999999999976 45888889999999999999976 5578888999
Q ss_pred CCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCccccccccc-ccccCCCCCCCCccEEeecCCCCcc-cc
Q 005813 525 PTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLED-KRLGTTLPLPASLTSLGISNFPNLE-RL 602 (676)
Q Consensus 525 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~-~~l~~~~~~~~~L~~L~l~~c~~l~-~l 602 (676)
+++|++|++++|.....+ ..+.++++|+.|+|++| .+...+... ... ...+..+++.+ +.+. .+
T Consensus 292 l~~L~~L~L~~N~l~~lp-----~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~~------~~~~~~l~l~~-N~l~~~~ 357 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLP-----WEFGNLCNLQFLGVEGN--PLEKQFLKILTEK------SVTGLIFYLRD-NRPEIPL 357 (727)
T ss_dssp GTTCSEEECCSSCCCCCC-----SSTTSCTTCCCEECTTS--CCCSHHHHHHHHH------HHHHHHHHHHH-CCCCCCC
T ss_pred CCCCCEEECCCCCCCccC-----hhhhcCCCccEEeCCCC--ccCCCChHHHhhc------chhhhHHhhcc-CcccCcC
Confidence 999999999999876432 35899999999999998 666433222 111 01112355666 3332 23
Q ss_pred hhhcCCCCCccEEEeCCC
Q 005813 603 SSSIVDLQNLTELYLADC 620 (676)
Q Consensus 603 ~~~~~~~~~L~~L~l~~c 620 (676)
| ..|+.|+++.+
T Consensus 358 p------~~l~~l~l~~n 369 (727)
T 4b8c_D 358 P------HERRFIEINTD 369 (727)
T ss_dssp C------CC---------
T ss_pred c------cccceeEeecc
Confidence 3 46777777776
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.64 E-value=1.6e-09 Score=101.47 Aligned_cols=127 Identities=15% Similarity=0.176 Sum_probs=92.7
Q ss_pred CCcceEEEcCC-CChhhHHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCcccee
Q 005813 430 PSLKSIRVGGC-SKLESIAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLT 508 (676)
Q Consensus 430 ~~L~~L~l~~~-~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 508 (676)
..++...+.+. +.++.++..+..+++|++|++++| .++.+| .+..+++|+.|++++|. +..+|..+..+++|++|+
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELW 99 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEE
Confidence 35566666543 235566667888999999999998 677777 67788999999999976 557777777789999999
Q ss_pred eeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 509 IGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 509 l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
+++|. +..++ .+..+++|++|++++|......... .+..+++|+.|++++|
T Consensus 100 L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~---~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 100 ISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEID---KLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEEE-CCCHH-HHHHHHHSSEEEESEEECCCHHHHH---HHTTTTTCSEEEECSC
T ss_pred CcCCc-CCcCC-ccccCCCCCEEECCCCcCCchhHHH---HHhcCCCCCEEEecCC
Confidence 99974 55555 4566777777777777665543311 3566777777777775
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.47 E-value=8.3e-06 Score=84.97 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=14.2
Q ss_pred CCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCC
Q 005813 584 LPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLAD 619 (676)
Q Consensus 584 ~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~ 619 (676)
.+.+|+.+.+.. .++.|.. .|.+|++|+.+++.+
T Consensus 332 ~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 332 GCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred CCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 334444444432 2333333 444444444444443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.45 E-value=4.3e-07 Score=82.67 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=56.9
Q ss_pred CccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-
Q 005813 526 TNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS- 604 (676)
Q Consensus 526 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~- 604 (676)
++|++|++++|......+ ..+.++++|+.|++++| .+..++... +..+++|+.|++++ +.++.++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~i~~~~------~~~l~~L~~L~L~~-N~l~~l~~~ 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP----GVFDHLVNLQQLYFNSN--KLTAIPTGV------FDKLTQLTQLDLND-NHLKSIPRG 99 (174)
T ss_dssp TTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTT
T ss_pred CCCcEEEeCCCCccccCH----HHhcCCcCCCEEECCCC--CCCccChhH------hCCcchhhEEECCC-CccceeCHH
Confidence 566666666666554433 34677777888888877 777766532 23447788888887 67777776
Q ss_pred hcCCCCCccEEEeCCCC
Q 005813 605 SIVDLQNLTELYLADCP 621 (676)
Q Consensus 605 ~~~~~~~L~~L~l~~c~ 621 (676)
.+..+++|++|++++|+
T Consensus 100 ~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTCTTCSEEECCSSC
T ss_pred HhccccCCCEEEeCCCC
Confidence 37778888888888874
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.45 E-value=4.1e-07 Score=82.48 Aligned_cols=101 Identities=22% Similarity=0.353 Sum_probs=60.1
Q ss_pred cceeeeccCCCCCCCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCC
Q 005813 505 QQLTIGIGGALPSLEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPL 584 (676)
Q Consensus 505 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~ 584 (676)
+.++++++ .+..+|.. .+++|++|++++|......+ ..+.++++|+.|++++| .+..++... +..
T Consensus 12 ~~l~~s~n-~l~~ip~~--~~~~l~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~------f~~ 76 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTG--IPTTTQVLYLYDNQITKLEP----GVFDRLTQLTRLDLDNN--QLTVLPAGV------FDK 76 (170)
T ss_dssp TEEECTTS-CCSSCCSC--CCTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSS--CCCCCCTTT------TTT
T ss_pred CEEEeCCC-CcCccCcc--CCCCCcEEEcCCCcCCccCh----hhhcCcccCCEEECCCC--CcCccChhh------ccC
Confidence 44444442 23344422 23556666666665554433 24666777777777776 666665432 234
Q ss_pred CCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCC
Q 005813 585 PASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCP 621 (676)
Q Consensus 585 ~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 621 (676)
+++|+.|++++ +.++.++. .+..+++|++|++++|+
T Consensus 77 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 77 LTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 46777777777 66777665 46777777777777764
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.45 E-value=5.7e-07 Score=81.84 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=51.4
Q ss_pred ceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCCcC-CCCCCccceeeccC
Q 005813 457 ETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLEEE-DDLPTNLQSLNIWG 535 (676)
Q Consensus 457 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~ 535 (676)
+.++++++ .++.+|..+. ++|+.|++++|......|..+..+++|++|++++|. +..++.. +..+++|++|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 45555554 4455554332 466666666654333334455566666666666643 3333322 34555555555555
Q ss_pred cchhhhhhhhccccccccccccEEEEecC
Q 005813 536 NMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 536 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
|....... ..+.++++|+.|++++|
T Consensus 91 N~l~~l~~----~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 91 NHLKSIPR----GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SCCCCCCT----TTTTTCTTCSEEECCSS
T ss_pred CccceeCH----HHhccccCCCEEEeCCC
Confidence 55443332 22555566666666665
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.45 E-value=5e-07 Score=81.91 Aligned_cols=101 Identities=21% Similarity=0.169 Sum_probs=52.1
Q ss_pred cceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccCCCCCCC-cCCCCCCccceeecc
Q 005813 456 LETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQSLNIW 534 (676)
Q Consensus 456 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~ 534 (676)
.++++++++ .++.+|..+. ++|+.|++++|......+..+..+++|++|++++|. +..++ ..+..+++|++|+++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 345555555 4555554332 466666666654333334445566666666666653 33333 223455555555555
Q ss_pred CcchhhhhhhhccccccccccccEEEEecC
Q 005813 535 GNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 535 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
+|....... ..+.++++|+.|++++|
T Consensus 87 ~N~l~~~~~----~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 87 DNQLKSIPR----GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SSCCCCCCT----TTTTTCTTCCEEECCSS
T ss_pred CCccCEeCH----HHhcCCCCCCEEEeCCC
Confidence 555444332 23555566666666665
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.38 E-value=1.9e-05 Score=82.29 Aligned_cols=104 Identities=18% Similarity=0.296 Sum_probs=48.8
Q ss_pred hccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccc-cccCCCCccceeeeccCCCCCC-CcCCCCCC
Q 005813 450 LDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPK-GLHNLTSLQQLTIGIGGALPSL-EEEDDLPT 526 (676)
Q Consensus 450 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~ 526 (676)
|..+.+|+.+.+.+. ...+.. .+..+++|+.+.+.. .+..++. .|.+|.+|+++.+... ++.+ ...+..+.
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeecccccEEecccc--cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 444555555555432 222222 344455566555532 1233322 4455566666655432 2222 12345556
Q ss_pred ccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 527 NLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
+|+.+.+-.+ ...... .+|.+|++|+.+.+.++
T Consensus 335 ~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSC
T ss_pred CCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCc
Confidence 6666666432 111111 34666677777766664
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.29 E-value=9e-05 Score=76.64 Aligned_cols=71 Identities=8% Similarity=0.166 Sum_probs=41.6
Q ss_pred cccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCCCccccC
Q 005813 549 GFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCPKLKYFP 627 (676)
Q Consensus 549 ~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~i~ 627 (676)
.+.++++|+.+.+.++ .++.|+.. +|..+.+|+.+.+.. +++.|.. .|.+|++|+++.+.. .++.|.
T Consensus 281 aF~~c~~L~~i~l~~~--~i~~I~~~------aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNS--AIETLEPR------VFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TTTTCTTCCEEEECCT--TCCEECTT------TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred cccccccccccccccc--ccceehhh------hhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEc
Confidence 4566666777766654 45555543 244556667666643 4566654 666777777776654 355555
Q ss_pred CCCC
Q 005813 628 EKGL 631 (676)
Q Consensus 628 ~~~l 631 (676)
..++
T Consensus 349 ~~aF 352 (379)
T 4h09_A 349 SGAF 352 (379)
T ss_dssp TTTT
T ss_pred hhHh
Confidence 5443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=7.1e-08 Score=99.47 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=30.2
Q ss_pred CCcceEEEcCCCChhhH----HHhhcc-CCccceeeccCCCCcccc--CCCCCCCCCccEEEeecCc
Q 005813 430 PSLKSIRVGGCSKLESI----AERLDN-NTSLETISIDSCKNLVSF--PEGGLPCAKLRTLAISNCK 489 (676)
Q Consensus 430 ~~L~~L~l~~~~~l~~~----~~~~~~-~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~~~ 489 (676)
++++.|++++|...... ...+.. .++|++|++++|. +.+. ......+++|+.|++++|.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC
Confidence 56777777776643322 222222 2577777777763 3221 1112224456666666654
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=1.2e-06 Score=78.53 Aligned_cols=91 Identities=8% Similarity=0.134 Sum_probs=66.5
Q ss_pred CCcceEeecCCCCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhh---cCCcceEEEecCCCCccc
Q 005813 204 PKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCE---LSCRLEYLRLSECKGLVK 280 (676)
Q Consensus 204 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~ 280 (676)
..|+.|++++|. +++ ..-..+..+++|++|++++|..+++- ++..++. .+++|++|++++|..+++
T Consensus 61 ~~L~~LDLs~~~-Itd---~GL~~L~~~~~L~~L~L~~C~~ItD~-------gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMS---IGFDHMEGLQYVEKIRLCKCHYIEDG-------CLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCG---GGGGGGTTCSCCCEEEEESCTTCCHH-------HHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccH---HHHHHhcCCCCCCEEEeCCCCccCHH-------HHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 478999999998 444 22334578999999999999888874 3444433 246799999999988876
Q ss_pred c-cccccCCCCCceEeecCCCCCCCC
Q 005813 281 L-PQSSLSLSSLREIEICSCHSLVSF 305 (676)
Q Consensus 281 l-~~~~~~l~~L~~L~l~~~~~l~~~ 305 (676)
- -..+..+++|++|++++|+.+++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCch
Confidence 2 234567888888888888877654
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=2e-06 Score=76.97 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=41.1
Q ss_pred ccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcccch-hh
Q 005813 527 NLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLERLS-SS 605 (676)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~ 605 (676)
+|++||+++|....... ..+.++++|+.|+|++| ..+..-.- ..+.......++|++|++++|++++.-. ..
T Consensus 62 ~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C-~~ItD~gL--~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKC-HYIEDGCL--ERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESC-TTCCHHHH--HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCC-CccCHHHH--HHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 56666666665333333 23556666666666663 22221110 0010000001245555555555554311 13
Q ss_pred cCCCCCccEEEeCCCCCccc
Q 005813 606 IVDLQNLTELYLADCPKLKY 625 (676)
Q Consensus 606 ~~~~~~L~~L~l~~c~~l~~ 625 (676)
+..+++|++|++++|+.++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 34555666666666555444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=0.00064 Score=70.16 Aligned_cols=124 Identities=10% Similarity=0.067 Sum_probs=71.3
Q ss_pred CcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcceEEecccccccccccccCC
Q 005813 29 SFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRTG 106 (676)
Q Consensus 29 ~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 106 (676)
...+|+.+.+.+ .+++++ +|.++.+|+.+++..+ ++.|+...|. .+ +|+++.+.. ++........
T Consensus 44 ~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~-----~c-~l~~i~~~~--~l~~I~~~aF- 110 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFA-----DT-KLQSYTGME--RVKKFGDYVF- 110 (379)
T ss_dssp GGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTT-----TC-CCCEEEECT--TCCEECTTTT-
T ss_pred cccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhc-----CC-CCceEECCc--eeeEecccee-
Confidence 356899999865 688888 6999999999999754 8888876653 34 577777643 2333322222
Q ss_pred CCcccCCcccEEEEccCCCcccccCCCCCCccEEEEcCC-cCh-hhcccCCCceeEEEEcCCCCe
Q 005813 107 QGVEWFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGC-EEL-LVSVASLPALCKFEIGGCKKV 169 (676)
Q Consensus 107 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~-~~~-~~~~~~~~~L~~L~l~~~~~~ 169 (676)
...+|+.+.+.+.-...+...-.-.+++...+... ..+ ...+..+..++...+......
T Consensus 111 ----~~~~L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~ 171 (379)
T 4h09_A 111 ----QGTDLDDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKN 171 (379)
T ss_dssp ----TTCCCSEEECCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSS
T ss_pred ----ccCCcccccCCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccce
Confidence 23478888875421111111111124555544332 111 122556677777777665433
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.08 E-value=9.7e-08 Score=98.45 Aligned_cols=185 Identities=14% Similarity=0.080 Sum_probs=113.3
Q ss_pred CCccceeeccCCCCccccC-----CCC-CCCCCccEEEeecCcCccccc-ccccCCCCccceeeeccCCCCCCCcCC---
Q 005813 453 NTSLETISIDSCKNLVSFP-----EGG-LPCAKLRTLAISNCKRLEALP-KGLHNLTSLQQLTIGIGGALPSLEEED--- 522 (676)
Q Consensus 453 ~~~L~~L~l~~~~~l~~~~-----~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~--- 522 (676)
.++|++|++++|. +.... ..+ ...++|+.|++++|....... .....+++|++|++++|..-..-...+
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 5789999999994 44321 111 123699999999986433211 122456789999999984321111111
Q ss_pred --CCCCccceeeccCcchhhhhhhhccccccccccccEEEEecCCCcccccccccccccCCCCCCCCccEEeecCCCCcc
Q 005813 523 --DLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLE 600 (676)
Q Consensus 523 --~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~ 600 (676)
...++|++|++++|.............+...++|+.|++++| .+...... .+...+..+++|+.|++++ +.++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~~--~L~~~L~~~~~L~~L~Ls~-N~i~ 224 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGLE--LLAAQLDRNRQLQELNVAY-NGAG 224 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHHH--HHHHHGGGCSCCCEEECCS-SCCC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHHH--HHHHHHhcCCCcCeEECCC-CCCC
Confidence 246789999999998765443221134578899999999998 55543211 1122223457899999999 4665
Q ss_pred c-----chhhcCCCCCccEEEeCCCCCccccCCCCC----ccc---cceee--ecCCh
Q 005813 601 R-----LSSSIVDLQNLTELYLADCPKLKYFPEKGL----PSS---LLRLY--IVGCP 644 (676)
Q Consensus 601 ~-----l~~~~~~~~~L~~L~l~~c~~l~~i~~~~l----~~~---L~~L~--i~~c~ 644 (676)
. +...+...++|++|++++|+ +.......+ ... |+.+. +.++.
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC------CEEECCCC----
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence 3 34456678999999999984 554332211 112 77776 55554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.01 E-value=9.8e-06 Score=82.69 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=35.4
Q ss_pred HHHhhccCCccceeeccCCCCccccCCCCCCCCCccEEEeecCcCcccccccc--cCCCCccceeee
Q 005813 446 IAERLDNNTSLETISIDSCKNLVSFPEGGLPCAKLRTLAISNCKRLEALPKGL--HNLTSLQQLTIG 510 (676)
Q Consensus 446 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~ 510 (676)
+...+..+|+|+.|.+++|..+ .++. + ..++|+.|++..|.........+ ..+|+|+.|.++
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3344566778888888776333 2332 2 36778888887665322211122 357777777765
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.99 E-value=1.1e-05 Score=82.35 Aligned_cols=105 Identities=23% Similarity=0.187 Sum_probs=77.9
Q ss_pred EEEeecCcCcccccccccCCCCccceeeeccCCCCCCC-cCCCCCCccceeeccCcchhhhhhhhccccccccccccEEE
Q 005813 482 TLAISNCKRLEALPKGLHNLTSLQQLTIGIGGALPSLE-EEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLT 560 (676)
Q Consensus 482 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 560 (676)
.++.++++.+..+|. +..+++|++|++++++.+..++ ..++.+++|+.|+|++|......+ ..|.++++|+.|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP----DAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT----TGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH----HHhcCCcCCCEEe
Confidence 456666546778888 8888999999998644555555 467889999999999998766554 3578899999999
Q ss_pred EecCCCcccccccccccccCCCCCCCCccEEeecCCCCccc
Q 005813 561 ISRCDDDMVSFPLEDKRLGTTLPLPASLTSLGISNFPNLER 601 (676)
Q Consensus 561 l~~n~~~l~~i~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~ 601 (676)
|++| .+..++... +..++ |+.|++.+ +.+..
T Consensus 87 l~~N--~l~~~~~~~------~~~~~-L~~l~l~~-N~~~c 117 (347)
T 2ifg_A 87 LSFN--ALESLSWKT------VQGLS-LQELVLSG-NPLHC 117 (347)
T ss_dssp CCSS--CCSCCCSTT------TCSCC-CCEEECCS-SCCCC
T ss_pred CCCC--ccceeCHHH------cccCC-ceEEEeeC-CCccC
Confidence 9998 888877643 11223 88999988 55653
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=2.9e-05 Score=79.22 Aligned_cols=54 Identities=24% Similarity=0.146 Sum_probs=32.5
Q ss_pred cCCcccEEEEccCCCcccccCCCCCCccEEEEcCCcChhhc-----ccCCCceeEEEEcC
Q 005813 111 WFPKLRELHIIRCSKLQGTFPEHLPALEMLAIEGCEELLVS-----VASLPALCKFEIGG 165 (676)
Q Consensus 111 ~~~~L~~L~l~~c~~l~~~~~~~~~~L~~L~i~~~~~~~~~-----~~~~~~L~~L~l~~ 165 (676)
.+|+|++|.++++..+. ..+-..++|+.|.+..|...... ...+|+|++|+++.
T Consensus 170 ~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp TCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred cCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 56778888887663332 11123567788887766533222 23578888888753
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.89 E-value=2.2e-05 Score=80.17 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=62.2
Q ss_pred EEEcCCCChhhHHHhhccCCccceeeccCCCCccccCC-CCCCCCCccEEEeecCcCcccccccccCCCCccceeeeccC
Q 005813 435 IRVGGCSKLESIAERLDNNTSLETISIDSCKNLVSFPE-GGLPCAKLRTLAISNCKRLEALPKGLHNLTSLQQLTIGIGG 513 (676)
Q Consensus 435 L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 513 (676)
++.++.+.+..+|. +..+++|++|+++++..+..++. .+..+++|+.|+|++|......|..+..+++|+.|++++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444434556666 77777777777775335666553 56667777777777765333334456777777777777754
Q ss_pred CCCCCCcCCCCCCccceeeccCcchh
Q 005813 514 ALPSLEEEDDLPTNLQSLNIWGNMEI 539 (676)
Q Consensus 514 ~l~~~~~~~~~~~~L~~L~l~~~~~~ 539 (676)
+..++........|+.|++.+|+..
T Consensus 92 -l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 -LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp -CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred -cceeCHHHcccCCceEEEeeCCCcc
Confidence 4444433222223777777776543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.28 E-value=4.7e-05 Score=69.75 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=17.3
Q ss_pred CccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 526 TNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 526 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
++|++|++++|.............+...++|+.|+|++|
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 445555555554433322111122344455666666655
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.90 E-value=0.0011 Score=60.46 Aligned_cols=93 Identities=23% Similarity=0.201 Sum_probs=48.6
Q ss_pred CCCCCCCcceEeecCC-CCchhhhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCCC
Q 005813 199 LKPRIPKLEELGINNM-KNETHIWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECKG 277 (676)
Q Consensus 199 ~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 277 (676)
+....++|++|++++| ..-..........+...+.|++|++++| .+.+-....+.+.+.. .++|++|++++|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~----n~~L~~L~L~~N~i 105 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKV----NNTLKSLNVESNFI 105 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHH----CSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHh----CCCcCEEECcCCcC
Confidence 3445677777777776 3322211122334455567777777775 3544333222223322 26677777776642
Q ss_pred ccc----ccccccCCCCCceEee
Q 005813 278 LVK----LPQSSLSLSSLREIEI 296 (676)
Q Consensus 278 l~~----l~~~~~~l~~L~~L~l 296 (676)
-.. +...+...++|++|++
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CHHHHHHHHHHHHhCCCceEEEe
Confidence 221 3445555666666666
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.79 E-value=0.0049 Score=59.37 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=5.6
Q ss_pred CccEEEeCCCC
Q 005813 611 NLTELYLADCP 621 (676)
Q Consensus 611 ~L~~L~l~~c~ 621 (676)
+|++|++++|+
T Consensus 221 ~L~~L~L~~Np 231 (267)
T 3rw6_A 221 KLEELWLDGNS 231 (267)
T ss_dssp CCSEEECTTST
T ss_pred CcceEEccCCc
Confidence 45555555544
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.51 E-value=0.0098 Score=57.25 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=37.0
Q ss_pred CCcceEEEecCCCCcc--cccccccCCCCCceEeecCCCCCCCCCCccCCC--CccEEeecccc
Q 005813 264 SCRLEYLRLSECKGLV--KLPQSSLSLSSLREIEICSCHSLVSFPEVALPS--KLRKIEIRYCD 323 (676)
Q Consensus 264 ~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~L~~L~l~~~~ 323 (676)
+++|++|+|++|.... .++..+..+++|++|+|++|. +.++.....+. +|+.|++++|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTST
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCc
Confidence 4777888887765322 344455677788888887754 44443333333 77778887777
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.44 E-value=0.086 Score=44.47 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=26.9
Q ss_pred CCCCccEEeecCCCCcccchh-hcCCCCCccEEEeCCCC
Q 005813 584 LPASLTSLGISNFPNLERLSS-SIVDLQNLTELYLADCP 621 (676)
Q Consensus 584 ~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 621 (676)
.+++|+.|++++ +.|+.++. .+..+++|+.|++++||
T Consensus 29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 456777888877 67777766 55677777888777765
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.26 E-value=0.091 Score=44.34 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=33.7
Q ss_pred eEEEeccCCC--CCCcccCCCCcCCccEEEEeCCCCCCCCC--CcCCCCccceEeeeccc
Q 005813 10 QFCISGYEGK--QFPTWLGDSSFSNLATLNFEDCSVCTTLP--SVGQLHSLKHLAVRGMS 65 (676)
Q Consensus 10 ~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~ 65 (676)
.++.++.... .+|..+. .+|++|+|++ +.++.+| .|..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp----~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP----VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC----TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC----cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 4455555555 6666554 5677777777 4777777 46777777777777775
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.09 E-value=0.17 Score=45.90 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=30.0
Q ss_pred CCCCccceeeeccCCCCC-----CCcCCCCCCccceeeccCcchhhhhhhhccccccccccccEEEEecC
Q 005813 500 NLTSLQQLTIGIGGALPS-----LEEEDDLPTNLQSLNIWGNMEIWKSMIERGRGFHRFSSLRRLTISRC 564 (676)
Q Consensus 500 ~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n 564 (676)
.-+.|++|+++++..+.. +.+.+..-..|+.|+|++|.............+..-+.|+.|+|+.|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 445666666665422221 11122333456666666665554433221122334455566666555
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.81 E-value=0.97 Score=40.89 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=28.2
Q ss_pred CCCcceEeecCCCCchh-hhhccchhhccCCCccEEEeccCCCccccchhhhhhHHHHHhhcCCcceEEEecCCC
Q 005813 203 IPKLEELGINNMKNETH-IWKSHNELLQDICSLKRLTIRRCPKIQSLVAEEEKDQQQQLCELSCRLEYLRLSECK 276 (676)
Q Consensus 203 ~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 276 (676)
-+.|++|+|++++.+.+ ........+..-+.|+.|++.+| .+.+.....+.+.+..- ..|++|+|++|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N----~tL~~L~L~~N~ 109 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETS----PSLRVLNVESNF 109 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHC----SSCCEEECCSSB
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcC----CccCeEecCCCc
Confidence 34555666655422221 01111222333445555555553 34443333322222222 455555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.78 E-value=28 Score=27.23 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=24.4
Q ss_pred CCCCC--CcCCCCccceEeeecccCceEeCCccCCCCCCCCCCCcceEEecc
Q 005813 44 CTTLP--SVGQLHSLKHLAVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFEN 93 (676)
Q Consensus 44 l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~ 93 (676)
++.+. .|.++..|+.+.+-.. ++.|+...| ..|.+|+++.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF-----~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMF-----SGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSS-----TTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHH-----hccCCccEEEEcC
Confidence 34444 4666666666666654 555554433 3366666666643
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.53 E-value=76 Score=24.61 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=28.2
Q ss_pred ceeccCCCCCCCCCcceEeecCCCCchhhhhccchhhccCCCccEEEecc
Q 005813 192 QVFFTEPLKPRIPKLEELGINNMKNETHIWKSHNELLQDICSLKRLTIRR 241 (676)
Q Consensus 192 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 241 (676)
....+..++..+.+|+++.+-.. ++. +....+..|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~---Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGL---LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSC---CCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hhe---EcHHHHhccCCccEEEEcC
Confidence 33445567777778887777542 222 4455667777777777765
Done!