BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005815
(676 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 484 bits (1246), Expect = e-137, Method: Compositional matrix adjust.
Identities = 243/454 (53%), Positives = 335/454 (73%), Gaps = 10/454 (2%)
Query: 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAI 267
N VTF DV G +EA ++ +E+V+FL+ P KF +GA++PKG+LLVGPPGTGKTLLA+A+
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAV 69
Query: 268 AGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXX 327
AGEA VPFF +SGS+F+E+FVGVGA+RVRDLF +AKA++PC+VFIDEIDAV
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 328 XXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIR 387
+DEREQTLNQLL EMDGF G+IV+AATNRP+ILD AL RPGRFD+++ V PD+
Sbjct: 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDML 189
Query: 388 GREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEI 447
GR++IL++H+ NK L +DV+L +IA RTPGF GADL NL+NEAA+LA R G+ IT+K+
Sbjct: 190 GRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
Query: 448 DDSIDRIVAG-MEGTKMTDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRG-QARG 505
+++IDR++AG + + K ++AYHE GHAV +T+ P +PV ++++IPRG +A G
Sbjct: 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALG 309
Query: 506 LTWFLPEEDPALISKQQLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQITQIARQMV 565
T LPEED L+S+ +L ++ LGGRAAEEV+FG ++T+GAA D+++ T+IAR MV
Sbjct: 310 YTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367
Query: 566 TRYGMS-EIGP--WTLIDPSVQSSDVVMRMLARNSMSEKLADDIDKTVRNIIESAYEVAK 622
+ GMS E+GP W + V + R+ RN SE++A ID+ V+ I+ + YE AK
Sbjct: 368 CQLGMSEELGPLAWGKEEQEVFLGKEITRL--RN-YSEEVASKIDEEVKKIVTNCYERAK 424
Query: 623 NHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSE 656
IR R+ +D +V++L+EKET+ GDE R +LSE
Sbjct: 425 EIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/454 (53%), Positives = 334/454 (73%), Gaps = 10/454 (2%)
Query: 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAI 267
N VTF DV G +EA ++ +E+V+FL+ P KF +GA++PKG+LLVGPPGTG TLLA+A+
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAV 69
Query: 268 AGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXX 327
AGEA VPFF +SGS+F+E+FVGVGA+RVRDLF +AKA++PC+VFIDEIDAV
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 328 XXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIR 387
+DEREQTLNQLL EMDGF G+IV+AATNRP+ILD AL RPGRFD+++ V PD+
Sbjct: 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDML 189
Query: 388 GREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEI 447
GR++IL++H+ NK L +DV+L +IA RTPGF GADL NL+NEAA+LA R G+ IT+K+
Sbjct: 190 GRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
Query: 448 DDSIDRIVAG-MEGTKMTDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRG-QARG 505
+++IDR++AG + + K ++AYHE GHAV +T+ P +PV ++++IPRG +A G
Sbjct: 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALG 309
Query: 506 LTWFLPEEDPALISKQQLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQITQIARQMV 565
T LPEED L+S+ +L ++ LGGRAAEEV+FG ++T+GAA D+++ T+IAR MV
Sbjct: 310 YTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367
Query: 566 TRYGMS-EIGP--WTLIDPSVQSSDVVMRMLARNSMSEKLADDIDKTVRNIIESAYEVAK 622
+ GMS E+GP W + V + R+ RN SE++A ID+ V+ I+ + YE AK
Sbjct: 368 CQLGMSEELGPLAWGKEEQEVFLGKEITRL--RN-YSEEVASKIDEEVKKIVTNCYERAK 424
Query: 623 NHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSE 656
IR R+ +D +V++L+EKET+ GDE R +LSE
Sbjct: 425 EIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/477 (48%), Positives = 325/477 (68%), Gaps = 19/477 (3%)
Query: 185 NSPGGP-NLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG 243
N GP + F +S+A+ E VTF DVAG +EAK++ +EIV+FL+ P +F +G
Sbjct: 2 NGRAGPSDSAFSFTKSRARVLTEAPK-VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG 60
Query: 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAK 303
A+IPKGVLLVGPPG GKT LA+A+AGEA VPF + SGS+F+EMFVGVGA+RVRDLF AK
Sbjct: 61 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 120
Query: 304 ANSPCLVFIDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363
++PC+VFIDEIDAV NDEREQTLNQLL EMDGF ++ ++V+AATNRP+
Sbjct: 121 RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 180
Query: 364 ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADL 423
ILD AL RPGRFDRQ+++ PD++GREQIL++H+ K L +DV L+++A RTPGF GADL
Sbjct: 181 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 240
Query: 424 ANLMNEAAILAGRRGKANITLKEIDDSIDRIVA-GMEGTKMTDGKNKILVAYHEIGHAVC 482
NL+NEAA+LA R G+ IT+K+++++ DR++ + + + +++ + AYHE GHA+
Sbjct: 241 ENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALA 300
Query: 483 ATLTPGHDPVQKVTLIPRGQARGLTWFLP-EEDPALISKQQLFARIVGGLGGRAAEEVIF 541
A D V KVT++PRG+A L + +P ED S+++L +I L GRAAEE++F
Sbjct: 301 AHFLEHADGVHKVTIVPRGRA--LGFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVF 358
Query: 542 GEAEITTGAAGDLQQITQIARQMVTRYGMS-EIGPWTLI---DPSVQSSDVVMRMLARNS 597
++TTGA D +Q T++AR+M+T +GM E GP D + DV
Sbjct: 359 D--DVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDV-------RQ 409
Query: 598 MSEKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVL 654
SE+ A ID+ VR +IE Y+ K + RE ++++ + L+E+ETL+ +EF+ V+
Sbjct: 410 YSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVV 466
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/477 (48%), Positives = 325/477 (68%), Gaps = 19/477 (3%)
Query: 185 NSPGGP-NLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG 243
N GP + F +S+A+ E VTF DVAG +EAK++ +EIV+FL+ P +F +G
Sbjct: 11 NGRAGPSDSAFSFTKSRARVLTEAPK-VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG 69
Query: 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAK 303
A+IPKGVLLVGPPG GKT LA+A+AGEA VPF + SGS+F+EMFVGVGA+RVRDLF AK
Sbjct: 70 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 129
Query: 304 ANSPCLVFIDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363
++PC+VFIDEIDAV NDEREQTLNQLL EMDGF ++ ++V+AATNRP+
Sbjct: 130 RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189
Query: 364 ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADL 423
ILD AL RPGRFDRQ+++ PD++GREQIL++H+ K L +DV L+++A RTPGF GADL
Sbjct: 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 249
Query: 424 ANLMNEAAILAGRRGKANITLKEIDDSIDRIVA-GMEGTKMTDGKNKILVAYHEIGHAVC 482
NL+NEAA+LA R G+ IT+K+++++ DR++ + + + +++ + AYHE GHA+
Sbjct: 250 ENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALA 309
Query: 483 ATLTPGHDPVQKVTLIPRGQARGLTWFLP-EEDPALISKQQLFARIVGGLGGRAAEEVIF 541
A D V KVT++PRG+A L + +P ED S+++L +I L GRAAEE++F
Sbjct: 310 AHFLEHADGVHKVTIVPRGRA--LGFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVF 367
Query: 542 GEAEITTGAAGDLQQITQIARQMVTRYGMS-EIGPWTLI---DPSVQSSDVVMRMLARNS 597
++TTGA D +Q T++AR+M+T +GM E GP D + DV
Sbjct: 368 D--DVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDV-------RQ 418
Query: 598 MSEKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVL 654
SE+ A ID+ VR +IE Y+ K + RE ++++ + L+E+ETL+ +EF+ V+
Sbjct: 419 YSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVV 475
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 330 bits (847), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/248 (64%), Positives = 196/248 (79%)
Query: 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 271
TF DVAG DEAK++ E+V++L+ P +F +G KIPKGVL+VGPPGTGKTLLAKAIAGEA
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 272 GVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXXXXND 331
VPFF++SGS+F+EMFVGVGASRVRD+F +AK +PC++FIDEIDAV +D
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 332 EREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQ 391
EREQTLNQ+L EMDGF GN G+IVIAATNRP++LD AL RPGRFDRQV VGLPD+RGREQ
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 392 ILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451
ILKVH L D+ ++IA TPGFSGADLANL+NEAA+ A R K +++ E + +
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 249
Query: 452 DRIVAGME 459
D+I+ G+E
Sbjct: 250 DKIMMGLE 257
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/256 (61%), Positives = 193/256 (75%), Gaps = 4/256 (1%)
Query: 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAK 265
+PN V F D+AG +EAK++ EIV FL+ PE++A +GAKIPKGVLLVGPPGTGKTLLAK
Sbjct: 5 KPN--VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 266 AIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV-XXXXXX 324
A+AGEA VPFFS+ GS FIEMFVG+GASRVRDLF AK +P ++FIDEIDA+
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 325 XXXXXNDEREQTLNQLLTEMDGF-TGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGL 383
NDEREQTLNQLL EMDGF + N+ VIV+AATNRPEILD AL RPGRFDRQV V
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 384 PDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANIT 443
PD GR +ILKVH KL DV+L +A T G +GADLAN++NEAA+LAGR + +
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242
Query: 444 LKEIDDSIDRIVAGME 459
+ + ++++R +AG+E
Sbjct: 243 QQHLKEAVERGIAGLE 258
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 285 bits (729), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 156/267 (58%), Positives = 205/267 (76%), Gaps = 2/267 (0%)
Query: 185 NSPGGP-NLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG 243
N GP + F +S+A+ E VTF DVAG +EAK++ +EIV+FL+ P +F +G
Sbjct: 11 NGRAGPSDSAFSFTKSRARVLTEAPK-VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG 69
Query: 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAK 303
A+IPKGVLLVGPPG GKT LA+A+AGEA VPF + SGS+F+EMFVGVGA+RVRDLF AK
Sbjct: 70 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 129
Query: 304 ANSPCLVFIDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363
++PC+VFIDEIDAV NDEREQTLNQLL EMDGF ++ ++V+AATNRP+
Sbjct: 130 RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189
Query: 364 ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADL 423
ILD AL RPGRFDRQ+++ PD++GREQIL++H+ K L +DV L+++A RTPGF GADL
Sbjct: 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 249
Query: 424 ANLMNEAAILAGRRGKANITLKEIDDS 450
NL+NEAA+LA R G+ IT+K+++++
Sbjct: 250 ENLLNEAALLAAREGRRKITMKDLEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/240 (62%), Positives = 194/240 (80%)
Query: 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 270
VTF DVAG +EAK++ +EIV+FL+ P +F +GA+IPKGVLLVGPPG GKT LA+A+AGE
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72
Query: 271 AGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXXXXN 330
A VPF + SGS+F+EMFVGVGA+RVRDLF AK ++PC+VFIDEIDAV N
Sbjct: 73 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGN 132
Query: 331 DEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGRE 390
DEREQTLNQLL EMDGF ++ ++V+AATNRP+ILD AL RPGRFDRQ+++ PD++GRE
Sbjct: 133 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 192
Query: 391 QILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450
QIL++H+ K L +DV L+++A RTPGF GADL NL+NEAA+LA R G+ IT+K+++++
Sbjct: 193 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/265 (49%), Positives = 181/265 (68%), Gaps = 9/265 (3%)
Query: 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 269
GV+F DVAG+ EAK + +E V +L++PE+F +GAK+PKG LL+GPPG GKTLLAKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 270 EAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV-XXXXXXXXXX 328
EA VPF +++G+EF+E+ G+GA+RVR LF +A+A +PC+V+IDEIDAV
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 329 XNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRG 388
N E EQTLNQLL EMDG VIV+A+TNR +ILD AL RPGR DR V + LP ++
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 389 REQILKVHSNNKKLDKDVSLSV--IATRTPGFSGADLANLMNEAAILAGRRGKANITLKE 446
R +I + H + KL + + +A TPGFSGAD+AN+ NEAA+ A R G ++
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241
Query: 447 IDDSIDRIVAGMEGTKMTDGKNKIL 471
+ +++R++AG T K+KIL
Sbjct: 242 FEYAVERVLAG------TAKKSKIL 260
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 165/259 (63%), Gaps = 2/259 (0%)
Query: 198 RSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPP 256
R+KA E++ V ++D+ G+++ Q+ +E+V+ L+ PE F VG + PKG+LL GPP
Sbjct: 2 RAKA-MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPP 60
Query: 257 GTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEID 316
GTGKTLLAKA+A E F + GSE ++ F+G GAS V+D+F AK +P ++FIDEID
Sbjct: 61 GTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEID 120
Query: 317 AVXXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFD 376
A+ + E ++TL QLL EMDGF V +I ATNRP+ILD A+ RPGRFD
Sbjct: 121 AIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFD 180
Query: 377 RQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGR 436
R + V PD +GR +ILK+H+ L +DV+L IA T G GA+L + EA + A R
Sbjct: 181 RIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240
Query: 437 RGKANITLKEIDDSIDRIV 455
+ +T+ + ++++I+
Sbjct: 241 ELRDYVTMDDFRKAVEKIM 259
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 198 bits (503), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 158/269 (58%), Gaps = 1/269 (0%)
Query: 192 LPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGV 250
LP + S +E VT+ DV G + + +E+V+ L +PE+FA +G PKG+
Sbjct: 187 LPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGI 246
Query: 251 LLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLV 310
LL GPPGTGKTL A+A+A F + GSE ++ +VG GA VR+LF A+ C++
Sbjct: 247 LLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACII 306
Query: 311 FIDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALH 370
F DEIDAV ++E ++T+ +L+T++DGF + V+ ATNRP LD AL
Sbjct: 307 FFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL 366
Query: 371 RPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEA 430
RPGR DR+V LPD+ GR I ++HS + +++ + +I+ P +GA+L ++ EA
Sbjct: 367 RPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEA 426
Query: 431 AILAGRRGKANITLKEIDDSIDRIVAGME 459
+ A R + T K+ ++D++++G +
Sbjct: 427 GMFAIRARRKVATEKDFLKAVDKVISGYK 455
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/267 (42%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGT 258
K + E E V +DDV G + +E+V+ L+ P F A+G K P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 259 GKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV 318
GKTL+A+A+A E G FF ++G E + G S +R F +A+ N+P ++FIDE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 319 XXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQ 378
+ + ++QLLT MDG + VIV+AATNRP +D AL R GRFDR+
Sbjct: 310 APKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 379 VSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438
V +G+PD GR +IL++H+ N KL DV L +A T G GADLA L +EAA+ A R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 439 KANITLKEIDDSIDRIVAGMEGTKMTD 465
I L+ D++ID V M D
Sbjct: 427 MDLIDLE--DETIDAEVMNSLAVTMDD 451
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGT 258
K + E E V +DD+ G + +E+V+ L+ P F A+G K P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 259 GKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV 318
GKTL+A+A+A E G FF ++G E + G S +R F +A+ N+P ++FIDE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 319 XXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQ 378
+ + ++QLLT MDG + VIV+AATNRP +D AL R GRFDR+
Sbjct: 310 APKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 379 VSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438
V +G+PD GR +IL++H+ N KL DV L +A T G GADLA L +EAA+ A R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 439 KANITLKEIDDSIDRIVAGMEGTKMTD 465
I L+ D++ID V M D
Sbjct: 427 MDLIDLE--DETIDAEVMNSLAVTMDD 451
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/267 (42%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGT 258
K + E E V +DDV G + +E+V+ L+ P F A+G K P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 259 GKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV 318
GKTL+A+A+A E G FF ++G E + G S +R F +A+ N+P ++FIDE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 319 XXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQ 378
+ + ++QLLT MDG + VIV+AATNRP +D AL R GRFDR+
Sbjct: 310 APKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 379 VSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438
V +G+PD GR +IL++H+ N KL DV L +A T G GADLA L +EAA+ A R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 439 KANITLKEIDDSIDRIVAGMEGTKMTD 465
I L+ D++ID V M D
Sbjct: 427 MDLIDLE--DETIDAEVMNSLAVTMDD 451
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 139/225 (61%), Gaps = 1/225 (0%)
Query: 211 VTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 269
VT++D+ G+++ K++ QE+VQ+ ++ P+KF G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 270 EAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXXXX 329
E F S+ G E + M+ G + VR++F+KA+ +PC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 330 NDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGR 389
++ +NQ+LTEMDG + V +I ATNRP+I+D A+ RPGR D+ + + LPD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 390 EQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILA 434
ILK + + KDV L +A T GFSGADL + A LA
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGT 258
K + E E V +DD+ G + +E+V+ L+ P F A+G K P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 259 GKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV 318
GKTL+A+A+A E G FF ++G E + G S +R F +A+ N+P ++FIDE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 319 XXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQ 378
+ + ++QLLT MDG + VIV+AATNRP +D AL R GRFDR+
Sbjct: 310 APKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 379 VSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438
V +G+PD GR +IL++H+ N KL DV L +A T G GADLA L +EAA+ A R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 439 KANITLKEIDDSIDRIVAGMEGTKMTD 465
I L+ D++ID V M D
Sbjct: 427 MDLIDLE--DETIDAEVMNSLAVTMDD 451
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGT 258
K + E E V +DD+ G + +E+V+ L+ P F A+G K P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 259 GKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV 318
GKTL+A+A+A E G FF ++G E + G S +R F +A+ N+P ++FIDE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 319 XXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQ 378
+ + ++QLLT MDG + VIV+AATNRP +D AL R GRFDR+
Sbjct: 310 APKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 379 VSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438
V +G+PD GR +IL++H+ N KL DV L +A T G GADLA L +EAA+ A R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 439 KANITLKEIDDSIDRIVAGMEGTKMTD 465
I L+ D++ID V M D
Sbjct: 427 MDLIDLE--DETIDAEVMNSLAVTMDD 451
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 158/267 (59%), Gaps = 6/267 (2%)
Query: 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGT 258
K + E E V +DD+ G + +E+V+ L+ P F A+G K P+G+LL GPPGT
Sbjct: 190 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 249
Query: 259 GKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV 318
GKTL+A+A+A E G FF ++G E + G S +R F +A+ N+P ++FIDE+DA+
Sbjct: 250 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309
Query: 319 XXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQ 378
+ + ++QLLT MDG + VIV+AATNRP +D AL R GRFDR+
Sbjct: 310 APKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 379 VSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438
V +G+PD GR +IL++H+ N KL DV L +A T G GADLA L +EAA+ A R+
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 426
Query: 439 KANITLKEIDDSIDRIVAGMEGTKMTD 465
I L+ D++ID V M D
Sbjct: 427 MDLIDLE--DETIDAEVMNSLAVTMDD 451
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 139/225 (61%), Gaps = 1/225 (0%)
Query: 211 VTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 269
VT++D+ G+++ K++ QE+VQ+ ++ P+KF G KGVL GPPG GKTLLAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 270 EAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXXXX 329
E F S+ G E + M+ G + VR++F+KA+ +PC++F DE+D++
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 330 NDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGR 389
++ +NQ+LTEMDG + V +I ATNRP+I+D A+ RPGR D+ + + LPD + R
Sbjct: 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653
Query: 390 EQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILA 434
ILK + + KDV L +A T GFSGADL + A LA
Sbjct: 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 139/225 (61%), Gaps = 1/225 (0%)
Query: 211 VTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 269
VT++D+ G+++ K++ QE+VQ+ ++ P+KF G KGVL GPPG GKTLLAKAIA
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 270 EAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXXXX 329
E F S+ G E + M+ G + VR++F+KA+ +PC++F DE+D++
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 330 NDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGR 389
++ +NQ+LTEMDG + V +I ATNRP+I+D A+ RPGR D+ + + LPD + R
Sbjct: 132 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191
Query: 390 EQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILA 434
ILK + + KDV L +A T GFSGADL + A LA
Sbjct: 192 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 149/254 (58%), Gaps = 3/254 (1%)
Query: 211 VTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 269
+TFD + G+ E ++ +E+++ L+ PE F VG K PKGVLL GPPGTGKTLLAKA+A
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 270 EAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXXXX 329
G F S ++ ++G A +R++F AK + PC++F+DE+DA+
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 330 NDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGR 389
+ E ++TL +LLT+MDGF +I ATNRP+ LD AL RPGR DR+V + LP+ GR
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357
Query: 390 EQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDD 449
+I K+H+ K + + GF+GAD+ N EA A R + +I ++
Sbjct: 358 LEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMK 417
Query: 450 SIDRI--VAGMEGT 461
++ ++ V +EGT
Sbjct: 418 AVRKVAEVKKLEGT 431
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 159/257 (61%), Gaps = 1/257 (0%)
Query: 212 TFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 270
T+D V G+ + ++ +E+++ ++ PE F ++G PKGV+L GPPGTGKTLLA+A+A
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
Query: 271 AGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXXXXN 330
F +SG+E ++ ++G G+ VR+LF A+ ++P ++F+DEID++ +
Sbjct: 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD 265
Query: 331 DEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGRE 390
E ++T+ +LL ++DGF + + +I ATNR +ILD AL RPGR DR++ P + R
Sbjct: 266 SEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARA 325
Query: 391 QILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450
+IL++HS L + ++L +A + G SGAD+ + EA + A R + ++T ++ + +
Sbjct: 326 EILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELA 385
Query: 451 IDRIVAGMEGTKMTDGK 467
+ +++ + T ++ K
Sbjct: 386 VGKVMNKNQETAISVAK 402
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 154/261 (59%), Gaps = 2/261 (0%)
Query: 197 GRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQE-IVQFLQTPEKFAAVGAKIPKGVLLVGP 255
R KA E++ T+ DV G+D+ ++ E IV ++ +KF +G + PKG L+ GP
Sbjct: 165 SRVKA-MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGP 223
Query: 256 PGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEI 315
PGTGKTLLA+A A + F L+ + ++M++G GA VRD F AK +P ++FIDE+
Sbjct: 224 PGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDEL 283
Query: 316 DAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRF 375
DA+ + E ++T+ +LL ++DGF+ + V V+AATNR ++LD AL R GR
Sbjct: 284 DAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRL 343
Query: 376 DRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAG 435
DR++ LP R QIL++HS D D++ +A T F+GA L + EA ++A
Sbjct: 344 DRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403
Query: 436 RRGKANITLKEIDDSIDRIVA 456
R G++++ ++ + I + A
Sbjct: 404 RNGQSSVKHEDFVEGISEVQA 424
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 21/242 (8%)
Query: 207 PNTGVTFDDVAGVDEAKQDF-QEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAK 265
PN VT+ D+ +++ +++ I+ ++ P++F A+G P GVLL GPPG GKTLLAK
Sbjct: 5 PN--VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62
Query: 266 AIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXX 325
A+A E+G+ F S+ G E + M+VG VR +F +AK ++PC++F DE+DA+
Sbjct: 63 AVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL------- 115
Query: 326 XXXXNDERE-----QTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVS 380
+RE + +NQLLTEMDG V ++AATNRP+I+D A+ RPGR D+ +
Sbjct: 116 -CPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLF 174
Query: 381 VGLPDIRGREQILKVHSNNKK---LDKDVSLSVIA--TRTPGFSGADLANLMNEAAILAG 435
VGLP R ILK + N LD DV+L IA R ++GADL+ L+ EA+I A
Sbjct: 175 VGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICAL 234
Query: 436 RR 437
R+
Sbjct: 235 RQ 236
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 148/254 (58%), Gaps = 1/254 (0%)
Query: 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKT 261
+M+ + ++ D+ G++ Q+ +E V+ L PE + +G K PKGV+L G PGTGKT
Sbjct: 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKT 230
Query: 262 LLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXX 321
LLAKA+A + F + GSE I+ ++G G R +F A N+P +VFIDEIDA+
Sbjct: 231 LLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK 290
Query: 322 XXXXXXXXNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSV 381
E ++T+ +LL ++DGF V VI ATN+ E LD AL RPGR DR++
Sbjct: 291 RYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILF 350
Query: 382 GLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKAN 441
PD+ +++IL +H++ L +DV+L + T SGAD+ + EA +LA R +
Sbjct: 351 ENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQ 410
Query: 442 ITLKEIDDSIDRIV 455
+T ++ + +R++
Sbjct: 411 VTAEDFKQAKERVM 424
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 140/242 (57%), Gaps = 2/242 (0%)
Query: 211 VTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 269
VT+ DV G+D KQ+ +E V+ L + + +G P+GVLL GPPGTGKT+L KA+A
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 270 EAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXXXXX 329
F ++GSEF+ ++G G VRD+F A+ N+P ++FIDE+D++
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS 288
Query: 330 NDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSV-GLPDIRG 388
+ E ++ L +LLT+MDGF ++ V VI ATNR + LD AL RPGR DR++ L D R
Sbjct: 289 DREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE 348
Query: 389 REQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEID 448
R I ++ L + L + R SGA +A +M EA + A R+ + I +++
Sbjct: 349 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 408
Query: 449 DS 450
++
Sbjct: 409 EA 410
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 130/232 (56%), Gaps = 10/232 (4%)
Query: 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLL 263
M+ V ++D+AGV+ AK +EIV + + P+ F + PKG+LL GPPGTGKTL+
Sbjct: 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLI 133
Query: 264 AKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXX 323
K IA ++G FFS+S S +VG G VR LF A+ P ++FIDEID++
Sbjct: 134 GKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL---LS 190
Query: 324 XXXXXXNDEREQTLNQLLTEMDGFTGNSG--VIVIAATNRPEILDSALHRPGRFDRQVSV 381
++ + + L ++DG T +S ++V+ ATNRP+ +D A R R +++ +
Sbjct: 191 QRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYI 248
Query: 382 GLPDIRGREQI-LKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAI 432
LP+ R+QI + + S + + + I ++ FSGAD+ L EA++
Sbjct: 249 PLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASL 300
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 128/235 (54%), Gaps = 15/235 (6%)
Query: 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQT-PEKFAAVGAKIP-KGVLLVGPPGTGKTL 262
+E V + D+AG D AKQ QE+V PE F G + P KG+LL GPPG GKTL
Sbjct: 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPPGNGKTL 69
Query: 263 LAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXX 322
LA+A+A E F ++S + +VG G VR LF A+ P ++FIDE+D++
Sbjct: 70 LARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSL---L 126
Query: 323 XXXXXXXNDEREQTLNQLLTEMDGFTGN---SGVIVIAATNRPEILDSALHRPGRFDRQV 379
++ + + L E DG GN ++V+AATNRP+ LD A R RF ++V
Sbjct: 127 SERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRV 184
Query: 380 SVGLPDIRGREQILK--VHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAI 432
V LPD + RE +L + LD + +L +A T G+SG+DL L +AA+
Sbjct: 185 YVSLPDEQTRELLLNRLLQKQGSPLDTE-ALRRLAKITDGYSGSDLTALAKDAAL 238
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 143/248 (57%), Gaps = 17/248 (6%)
Query: 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAV--GAKIP-KGVLLVGPPGTGKTL 262
+PN V ++DVAG++ AK+ +E V P KF + G + P G+LL GPPGTGK+
Sbjct: 21 KPN--VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKSY 75
Query: 263 LAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXX 322
LAKA+A EA FFS+S S+ + ++G V+ LF A+ N P ++FIDE+DA+
Sbjct: 76 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL---T 132
Query: 323 XXXXXXXNDEREQTLNQLLTEMDGFTGNS-GVIVIAATNRPEILDSALHRPGRFDRQVSV 381
++ + +LL +M+G +S GV+V+ ATN P LDSA+ R RF+R++ +
Sbjct: 133 GTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 190
Query: 382 GLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK 439
LPD+ R + +++ + L K+ + T G+SG+D+A ++ +A + R+ +
Sbjct: 191 PLPDLAARTTMFEINVGDTPCVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 249
Query: 440 ANITLKEI 447
+ K++
Sbjct: 250 SATHFKDV 257
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 145/255 (56%), Gaps = 17/255 (6%)
Query: 199 SKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAV--GAKIP-KGVLLVGP 255
S A +PN V ++DVAG++ AK+ +E V P KF + G + P G+LL GP
Sbjct: 23 SSAILSEKPN--VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGP 77
Query: 256 PGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEI 315
PGTGK+ LAKA+A EA FFS+S S+ + ++G V+ LF A+ N P ++FID++
Sbjct: 78 PGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 137
Query: 316 DAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNS-GVIVIAATNRPEILDSALHRPGR 374
DA+ ++ + +LL +M+G +S GV+V+ ATN P LDSA+ R R
Sbjct: 138 DAL---TGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--R 192
Query: 375 FDRQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAI 432
F+R++ + LPD+ R + +++ + L K+ + T G+SG+D+A ++ +A +
Sbjct: 193 FERRIYIPLPDLAARTTMFEINVGDTPCVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALM 251
Query: 433 LAGRRGKANITLKEI 447
R+ ++ K++
Sbjct: 252 QPIRKIQSATHFKDV 266
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 125/230 (54%), Gaps = 14/230 (6%)
Query: 209 TGVTFDDVAGVDEAKQDFQEIVQFLQ-TPEKFAAVGAKIP-KGVLLVGPPGTGKTLLAKA 266
T V FDD+AG D AKQ QEIV PE F G + P +G+LL GPPG GKT+LAKA
Sbjct: 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELF--TGLRAPARGLLLFGPPGNGKTMLAKA 167
Query: 267 IAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXXXXX 326
+A E+ FF++S + +VG G VR LF A+ P ++FID++D++
Sbjct: 168 VAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSL---LCERR 224
Query: 327 XXXNDEREQTLNQLLTEMDGF--TGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLP 384
+D + + L E DG G+ V+V+ ATNRP+ LD A+ R RF ++V V LP
Sbjct: 225 EGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLP 282
Query: 385 --DIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAI 432
+ R + L + L+ +A T G+SG+DL L +AA+
Sbjct: 283 NEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAAL 331
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 140/247 (56%), Gaps = 16/247 (6%)
Query: 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIP-KGVLLVGPPGTGKTLLA 264
PN V + DVAG++ AK+ +E V ++ P F G + P +G+LL GPPGTGK+ LA
Sbjct: 129 PN--VKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLA 184
Query: 265 KAIAGEAG-VPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXX 323
KA+A EA FFS+S S+ + ++G V++LF A+ N P ++FIDEID++
Sbjct: 185 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL---CG 241
Query: 324 XXXXXXNDEREQTLNQLLTEMDGF-TGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVG 382
++ + + L +M G N G++V+ ATN P +LDSA+ R RF++++ +
Sbjct: 242 SRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIP 299
Query: 383 LPDIRGREQILKVH--SNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKA 440
LP+ R + ++H S L + + +T G+SGAD++ ++ +A + R+ ++
Sbjct: 300 LPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358
Query: 441 NITLKEI 447
K++
Sbjct: 359 ATHFKKV 365
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 145/255 (56%), Gaps = 17/255 (6%)
Query: 199 SKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAV--GAKIP-KGVLLVGP 255
S A +PN V ++DVAG++ AK+ +E V P KF + G + P G+LL GP
Sbjct: 38 SSAILSEKPN--VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGP 92
Query: 256 PGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEI 315
PGTGK+ LAKA+A EA FFS+S S+ + ++G V+ LF A+ N P ++FID++
Sbjct: 93 PGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 152
Query: 316 DAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFTGNS-GVIVIAATNRPEILDSALHRPGR 374
DA+ ++ + +LL +M+G +S GV+V+ ATN P LDSA+ R R
Sbjct: 153 DAL---TGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--R 207
Query: 375 FDRQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAI 432
F+R++ + LPD+ R + +++ + L K+ + T G+SG+D+A ++ +A +
Sbjct: 208 FERRIYIPLPDLAARTTMFEINVGDTPSVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALM 266
Query: 433 LAGRRGKANITLKEI 447
R+ ++ K++
Sbjct: 267 QPIRKIQSATHFKDV 281
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 143/248 (57%), Gaps = 17/248 (6%)
Query: 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAV--GAKIP-KGVLLVGPPGTGKTL 262
+PN V ++DVAG++ AK+ +E V P KF + G + P G+LL GPPGTGK+
Sbjct: 12 KPN--VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKSY 66
Query: 263 LAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXX 322
LAKA+A EA FFS+S S+ + ++G V+ LF A+ N P ++FID++DA+
Sbjct: 67 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL---T 123
Query: 323 XXXXXXXNDEREQTLNQLLTEMDGFTGNS-GVIVIAATNRPEILDSALHRPGRFDRQVSV 381
++ + +LL +M+G +S GV+V+ ATN P LDSA+ R RF+R++ +
Sbjct: 124 GTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 181
Query: 382 GLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK 439
LPD+ R + +++ + L K+ + T G+SG+D+A ++ +A + R+ +
Sbjct: 182 PLPDLAARTTMFEINVGDTPCVLTKE-DYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240
Query: 440 ANITLKEI 447
+ K++
Sbjct: 241 SATHFKDV 248
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 141/248 (56%), Gaps = 18/248 (7%)
Query: 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIP-KGVLLVGPPGTGKTLLA 264
PN V + DVAG++ AK+ +E V ++ P F G + P +G+LL GPPGTGK+ LA
Sbjct: 7 PN--VKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLA 62
Query: 265 KAIAGEAG-VPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVXXXXX 323
KA+A EA FFS+S S+ + ++G V++LF A+ N P ++FIDEID++
Sbjct: 63 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL---CG 119
Query: 324 XXXXXXNDEREQTLNQLLTEMDGF-TGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVG 382
++ + + L +M G N G++V+ ATN P +LDSA+ R RF++++ +
Sbjct: 120 SRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIP 177
Query: 383 LPDIRGREQILKVH---SNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK 439
LP+ R + K+H + N + D + +T G+SGAD++ ++ +A + R+ +
Sbjct: 178 LPEPHARAAMFKLHLGTTQNSLTEAD--FRELGRKTDGYSGADISIIVRDALMQPVRKVQ 235
Query: 440 ANITLKEI 447
+ K++
Sbjct: 236 SATHFKKV 243
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 116/200 (58%), Gaps = 5/200 (2%)
Query: 460 GTKMT-DGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLPEEDPALI 518
G+ MT K K +A HE GHA+ ++ D V K+++IPRG A G+T LP ED +
Sbjct: 6 GSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIY 65
Query: 519 SKQQLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQITQIARQMVTRYGMSE-IGPWT 577
K+ L+ +I+ LGGRAAEEV FG+ ITTGA DLQ+ T +A +MV+ +GMS+ +GP
Sbjct: 66 DKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIA 125
Query: 578 LIDPSVQSSDVVMRMLARNSMSEKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVD 637
+ ++ + M S L +ID+ V+ II YE AK + +E + +V
Sbjct: 126 I---RRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVK 182
Query: 638 VLMEKETLSGDEFRAVLSEF 657
L+EKET++ +EF V +
Sbjct: 183 KLLEKETITCEEFVEVFKLY 202
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGA-SRVRDLFNKA-- 302
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL + A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 303 ---KANSPCLVFIDEIDAV 318
+VFIDEID +
Sbjct: 110 AIDAVEQNGIVFIDEIDKI 128
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 383 LPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANI 442
LPD+ GR I ++HS + +++ + +I+ P +GA+L ++ EA + A R +
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 443 TLKEIDDSIDRIVAG 457
T K+ ++D++++G
Sbjct: 67 TEKDFLKAVDKVISG 81
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 14/90 (15%)
Query: 195 GLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVG 254
GLG ++ + +G+ G + A++ IV+ +++ +K A + VLL G
Sbjct: 23 GLGLDESGLAKQAASGLV-----GQENAREACGVIVELIKS-KKMAG------RAVLLAG 70
Query: 255 PPGTGKTLLAKAIAGEAG--VPFFSLSGSE 282
PPGTGKT LA AIA E G VPF + GSE
Sbjct: 71 PPGTGKTALALAIAQELGSKVPFCPMVGSE 100
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGA-SRVRDLFNKA 302
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL + A
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGA-SRVRDLFNKA 302
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL + A
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGA-SRVRDLFNKA 302
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL + A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGA-SRVRDLFNKA 302
PK +L++GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL + A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 41/73 (56%)
Query: 385 DIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITL 444
D+ GR I ++HS + +++ + +I+ P +GA+L ++ EA A R + T
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 445 KEIDDSIDRIVAG 457
K+ ++D++++G
Sbjct: 62 KDFLKAVDKVISG 74
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 14/90 (15%)
Query: 195 GLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVG 254
GLG ++ + +G+ G + A++ IV+ +++ +K A + VLL G
Sbjct: 37 GLGLDESGLAKQAASGLV-----GQENAREACGVIVELIKS-KKXAG------RAVLLAG 84
Query: 255 PPGTGKTLLAKAIAGEAG--VPFFSLSGSE 282
PPGTGKT LA AIA E G VPF GSE
Sbjct: 85 PPGTGKTALALAIAQELGSKVPFCPXVGSE 114
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGA-SRVRDLFNKA 302
PK +L +GP G GKT +A+ +A A PF + ++F E+ +VG S +RDL + A
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 384 PDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANIT 443
P+ R ILK+HS L + ++L IA PG SGA++ + EA + A R + ++T
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 444 LKEIDDSIDRIV 455
++ + ++ +++
Sbjct: 71 QEDFEMAVAKVM 82
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 384 PDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANIT 443
P+ R ILK+HS L + ++L IA PG SGA++ + EA A R + ++T
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVHVT 62
Query: 444 LKEIDDSIDRI 454
++ + ++ ++
Sbjct: 63 QEDFEXAVAKV 73
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASRV--RDL----FNKA 302
+LL+GP G+GKTL+A+ +A +P + E +VG + R L +N
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 303 KANSPCLVFIDEIDAV 318
KA +VFIDEID +
Sbjct: 135 KAQKG-IVFIDEIDKI 149
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASR-VRDLFNKAKANSPC 308
VLL GPP +GKT LA IA E+ PF + + + F + ++ +F+ A +
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 125
Query: 309 LVFIDEID 316
V +D+I+
Sbjct: 126 CVVVDDIE 133
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASR-VRDLFNKAKANSPC 308
VLL GPP +GKT LA IA E+ PF + + + F + ++ +F+ A +
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 126
Query: 309 LVFIDEID 316
V +D+I+
Sbjct: 127 CVVVDDIE 134
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKAKAN-- 305
+LL+GP G+GKTLLA+ +A VPF + E +VG ++ L K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 306 --SPCLVFIDEIDAV 318
+V+ID+ID +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGASR-VRDLFNKAKAN-- 305
+LL+GP G+GKTLLA+ +A VPF + E +VG ++ L K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 306 --SPCLVFIDEIDAV 318
+V+ID+ID +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 227 QEIVQFLQTPEKFAAVGAKIPKGV--------LLVGPPGTGKTLLAKAIAGEAGVPFFSL 278
+ + Q++ AA G +P+ + +L GPPGTGKT LA+ IA A +
Sbjct: 23 ENLAQYIGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81
Query: 279 SGSEFIEMFVGVGASRVRDLFNKAKANSPC----LVFIDEI 315
S V G +R+ +A+ N ++F+DE+
Sbjct: 82 SA-------VTSGVKEIREAIERARQNRNAGRRTILFVDEV 115
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIP-KGVLLVGPPGTGKTLLAKAIAGE 270
T D+ G + KQ + ++ AA K P + +LL GPPG GKT LA IA E
Sbjct: 10 TLDEYIGQERLKQKLRVYLE--------AAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
Query: 271 AGVPFFSLSG 280
GV SG
Sbjct: 62 LGVNLRVTSG 71
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIP-KGVLLVGPPGTGKTLLAKAIAGE 270
T D+ G + KQ + ++ AA K P + +LL GPPG GKT LA IA E
Sbjct: 10 TLDEYIGQERLKQKLRVYLE--------AAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
Query: 271 AGVPFFSLSG 280
GV SG
Sbjct: 62 LGVNLRVTSG 71
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPF--FSLSG----SEF---IEMFVGVGASRVRDLFN 300
+ L GPPG GKT LAK+IA G F SL G SE +VG R+
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 301 KAKANSPCLVFIDEID 316
KA +P +DEID
Sbjct: 171 KAGKLNPVF-LLDEID 185
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIP-KGVLLVGPPGTGKTLLAKAIAGE 270
T D+ G + KQ + ++ AA K P + +LL GPPG GKT LA IA E
Sbjct: 10 TLDEYIGQERLKQKLRVYLE--------AAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
Query: 271 AGVPFFSLSG 280
GV SG
Sbjct: 62 LGVNLRVTSG 71
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 248 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSEFIEMFV----GVGASRVRDLFNK 301
+ VL+ G PGTGKT +A +A G PF +++GSE + + + + R + +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 302 AKANSPCLVFIDEIDAV 318
KA + V + EID +
Sbjct: 131 IKAGAVHTVSLHEIDVI 147
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 31/119 (26%)
Query: 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 271
T D+V G DE Q + V+ P +L GPPGTGKT A A+A +
Sbjct: 15 TLDEVVGQDEVIQRLKGYVERKNIPH------------LLFSGPPGTGKTATAIALARD- 61
Query: 272 GVPFFSLSGSEFIEMFVGVGASR------VRDLFNKAKANSPC------LVFIDEIDAV 318
L G + + F+ + AS VR + +P ++F+DE DA+
Sbjct: 62 ------LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 31/119 (26%)
Query: 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 271
T D+V G DE Q + V+ P +L GPPGTGKT A A+A +
Sbjct: 15 TLDEVVGQDEVIQRLKGYVERKNIPH------------LLFSGPPGTGKTATAIALARD- 61
Query: 272 GVPFFSLSGSEFIEMFVGVGASR------VRDLFNKAKANSPC------LVFIDEIDAV 318
L G + + F+ + AS VR + +P ++F+DE DA+
Sbjct: 62 ------LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL 114
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 248 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSEFIEM 286
+ VL+ G PGTGKT +A A G PF +++GSE +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSL 126
>pdb|3NQI|A Chain A, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
pdb|3NQI|B Chain B, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
pdb|3NQI|C Chain C, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
pdb|3NQI|D Chain D, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
Length = 246
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 385 DIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITL 444
DI+ + ILK++ K D+ +++ ATRT F +++ ++ E + +G+ A IT+
Sbjct: 158 DIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEISQILREYTLKSGQTKPAKITI 217
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 17/31 (54%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280
VLL GPPG GKT LA IA E SG
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSG 84
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 17/31 (54%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280
VLL GPPG GKT LA IA E SG
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSG 84
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 17/31 (54%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280
VLL GPPG GKT LA IA E SG
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSG 84
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 17/31 (54%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280
VLL GPPG GKT LA IA E SG
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSG 84
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 17/31 (54%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280
VLL GPPG GKT LA IA E SG
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSG 84
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 39/123 (31%)
Query: 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 271
T D+V G +E + T KF G K+P +L GPPGTGKT A+A E
Sbjct: 23 TLDEVYGQNEV----------ITTVRKFVDEG-KLPH-LLFYGPPGTGKTSTIVALARE- 69
Query: 272 GVPFFSLSGSEFIEMFVGVGAS----------------RVRDLFNKAKANSPCLVFIDEI 315
+ G + M + + AS R +F+K L+ +DE
Sbjct: 70 ------IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK----LIILDEA 119
Query: 316 DAV 318
DA+
Sbjct: 120 DAM 122
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 27/112 (24%)
Query: 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKA 302
G+ + + +L GPPG GKT A +A E G + S+ R + L N
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV----------RSKTLLNAG 122
Query: 303 KANSPCLVFIDEIDAVXXXXXXXXXXXNDEREQTLNQ-----LLTEMDGFTG 349
N+ +D + V ++E Q LN ++ E+DG +G
Sbjct: 123 VKNA-----LDNMSVV-------GYFKHNEEAQNLNGKHFVIIMDEVDGMSG 162
>pdb|1BIY|A Chain A, Structure Of Diferric Buffalo Lactoferrin
Length = 689
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 10/166 (6%)
Query: 347 FTGNSGVIVIAATNRPEILDSALHRPGRFDR-QVSVGLPDIRGREQILKVHSNNKKLDKD 405
++ SG IV AT AL G D + G G+ ++ V + N+K K
Sbjct: 361 WSQQSGQIVTCATASTTDDCIALVLKGEADALSLDGGYIYTAGKCGLVPVLAENRKSSKH 420
Query: 406 VSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTKMTD 465
SL + T G+ + NE +GK K ++DR AG
Sbjct: 421 SSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKGK-----KSCHTAVDR-TAGWNIPMGLI 474
Query: 466 GKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLP 511
A+ E CA PG DP ++ + G +GL +P
Sbjct: 475 ANQTGSCAFDEFFSQSCA---PGADPKSRLCALCAGDDQGLDKCVP 517
>pdb|1CE2|A Chain A, Structure Of Diferric Buffalo Lactoferrin At 2.5a
Resolution
Length = 689
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 10/166 (6%)
Query: 347 FTGNSGVIVIAATNRPEILDSALHRPGRFDR-QVSVGLPDIRGREQILKVHSNNKKLDKD 405
++ SG IV AT AL G D + G G+ ++ V + N+K K
Sbjct: 361 WSQQSGQIVTCATASTTDDCIALVLKGEADALSLDGGYIYTAGKCGLVPVLAENRKSSKH 420
Query: 406 VSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTKMTD 465
SL + T G+ + NE +GK K ++DR AG
Sbjct: 421 SSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKGK-----KSCHTAVDR-TAGWNIPMGLI 474
Query: 466 GKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLP 511
A+ E CA PG DP ++ + G +GL +P
Sbjct: 475 ANQTGSCAFDEFFSQSCA---PGADPKSRLCALCAGDDQGLDKCVP 517
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 237 EKFAAVGAK--IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282
E F ++ +K IP +L PGTGKT +AKA+ + ++GS+
Sbjct: 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278
+LL G PG GKT L K +A ++G+ + ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278
+LL G PG GKT L K +A ++G+ + ++
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280
VLL GPPG G+T LA IA E SG
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSG 84
>pdb|2RHM|A Chain A, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|B Chain B, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|C Chain C, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|D Chain D, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
Length = 193
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVGAS 293
G + P +++ G P TGKT L++A+A +P LS F E+ F G+G S
Sbjct: 1 GXQTPALIIVTGHPATGKTTLSQALATGLRLPL--LSKDAFKEVXFDGLGWS 50
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 246 IPKG----VLLVGPPGTGKTLLAKAIAGEAGVPFFS 277
+P+G VLL+GPPG GK A +A + G+P S
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 247 PKGV--LLVGPPGTGKTLLAKAIAGE 270
PKG+ L+ G PGTGKT +A+ IA E
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAE 33
>pdb|3IJ5|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|C Chain C, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|D Chain D, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
Length = 211
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 429 EAAILAGRRGKANITLKEIDDSIDRIVAGMEGTKMTDGKNKILVAYHEIGHAVCATLTPG 488
+ AI+ GRR K ++D + + G+ T + G++ LVAYHE+ ATL
Sbjct: 94 DVAIITGRRAKL------LEDRANTL--GI--THLYQGQSDKLVAYHEL----LATLQCQ 139
Query: 489 HDPVQKV--TLI--PRGQARGLTWFLPEEDPALISKQQLFARIVGGLGG-RAAEEVIFGE 543
+ V + LI P GL+ + + P L+ K RI GG G R ++I
Sbjct: 140 PEQVAYIGDDLIDWPVMAQVGLSVAVADAHPLLLPKAHYVTRIKGGRGAVREVCDLILLA 199
Query: 544 AEITTGAAG 552
+ GA G
Sbjct: 200 QDKLEGATG 208
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 19/81 (23%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDL---------FN 300
+L GPPG GKT A A+A E L G + F+ + AS R + F
Sbjct: 49 LLFAGPPGVGKTTAALALARE-------LFGENWRHNFLELNASDERGINVIREKVKEFA 101
Query: 301 KAK---ANSPCLVFIDEIDAV 318
+ K S ++F+DE DA+
Sbjct: 102 RTKPIGGASFKIIFLDEADAL 122
>pdb|3EC2|A Chain A, Crystal Structure Of The Dnac Helicase Loader
Length = 180
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 248 KGVLLVGPPGTGKTLLA----KAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAK 303
KG+ VG PG GKT LA KAI + G+ + + I + F K
Sbjct: 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLXDEGKDTKFLKTV 98
Query: 304 ANSPCLVFID 313
NSP LV D
Sbjct: 99 LNSPVLVLDD 108
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 248 KGVLLVGPPGTGKTLLAKAIA 268
+ VLL+G PGTGK++L +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278
+ L G G GKT L KA A + VPF L
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDL 56
>pdb|1JW1|A Chain A, Crystallization And Structure Determination Of Goat
Lactoferrin At 4.0 Resolution: A New Form Of Packing In
Lactoferrins With A High Solvent Content In Crystals
Length = 689
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 9/124 (7%)
Query: 388 GREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEI 447
G+ ++ V + N+K K SL + T G+ + NE +GK K
Sbjct: 403 GKCGLVPVMAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKGK-----KSC 457
Query: 448 DDSIDRIVAGMEGTKMTDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGLT 507
++DR AG A+ E CA PG DP + + G +GL
Sbjct: 458 HTAVDR-TAGWNIPMGLIANQTGSCAFDEFFSQSCA---PGADPKSSLCALCAGDDQGLD 513
Query: 508 WFLP 511
+P
Sbjct: 514 KCVP 517
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 248 KGVLLVGPPGTGKTLL 263
+G++L GPPG+GKT++
Sbjct: 1049 RGIILCGPPGSGKTMI 1064
>pdb|3ECC|A Chain A, Crystal Structure Of The Dnac Helicase Loader In Complex
With Adp-Bef3
Length = 185
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 248 KGVLLVGPPGTGKTLLA----KAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAK 303
KG+ VG PG GKT LA KAI + G+ + + I + F K
Sbjct: 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV 98
Query: 304 ANSPCLVFID 313
NSP LV D
Sbjct: 99 LNSPVLVLDD 108
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 248 KGVLLVGPPGTGKTLL 263
+G++L GPPG+GKT++
Sbjct: 1268 RGIILCGPPGSGKTMI 1283
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 277
VLL+GPPG GK A +A + G+P S
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQIS 30
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSP 307
V+++GP G+GKT L +AI+G +P+ SG+ FI G+ ++R+ + + N P
Sbjct: 33 VIILGPNGSGKTTLLRAISGL--LPY---SGNIFIN---GMEVRKIRN-YIRYSTNLP 81
>pdb|2ZIU|A Chain A, Crystal Structure Of The Mus81-Eme1 Complex
pdb|2ZIV|A Chain A, Crystal Structure Of The Mus81-Eme1 Complex
Length = 311
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 599 SEKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFT 658
SEK+ ++ ++ E Y KN + RE + LM+ +SGD+ AVL ++
Sbjct: 202 SEKMVANLSCSLMAFTEFNYGAIKNKCQTVREVFAR---QLMQISGVSGDKAAAVLEHYS 258
Query: 659 DVSA 662
VS+
Sbjct: 259 TVSS 262
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF--------SLSGSEFIEMFVGVGASRVRD 297
+ + LVG G+GKT + K +A G FF ++ G+ E+F G S R+
Sbjct: 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFRE 106
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 250 VLLVGPPGTGKTLLAKAIAGEAGVP 274
+LL G PG+GK+ +A+A+A GVP
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVP 36
>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein
pdb|2FVA|A Chain A, Structure Of 18:0-Acp With Docked Fatty Acid
pdb|2FVE|A Chain A, Structure Of 10:0-Acp (Protein Alone)
pdb|2FVF|A Chain A, Structure Of 10:0-Acp (Protein With Docked Fatty Acid)
Length = 82
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 629 REAIDKLVDVLMEKETLSGDEFRAVLSEFTDVSADQVDRTPI 670
+E IDK+ D++ EK L D SEF+ + AD +D I
Sbjct: 3 KETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEI 44
>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|C Chain C, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|D Chain D, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 82
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 629 REAIDKLVDVLMEKETLSGDEFRAVLSEFTDVSADQVDRTPI 670
+E IDK+ D++ EK L D SEF+ + AD +D I
Sbjct: 3 KETIDKVSDIVKEKLALGADVVVTADSEFSKLGADXLDTVEI 44
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 461 TKMTDGKNKILVAYHEIGHAV 481
TK T G N LVA HEIGH++
Sbjct: 100 TKDTTGTNLFLVAAHEIGHSL 120
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 461 TKMTDGKNKILVAYHEIGHAV 481
TK T G N LVA HEIGH++
Sbjct: 105 TKDTTGTNLFLVAAHEIGHSL 125
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 461 TKMTDGKNKILVAYHEIGHAV 481
TK T G N LVA HEIGH++
Sbjct: 100 TKDTTGTNLFLVAAHEIGHSL 120
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 459 EGTKMTDGKNKILVAYHEIGHAV 481
+ TK T G N LVA HEIGH++
Sbjct: 185 QWTKDTTGTNLFLVAAHEIGHSL 207
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 461 TKMTDGKNKILVAYHEIGHAV 481
TK T G N LVA HEIGH++
Sbjct: 99 TKDTTGTNLFLVAAHEIGHSL 119
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 461 TKMTDGKNKILVAYHEIGHAV 481
TK T G N LVA HEIGH++
Sbjct: 105 TKDTTGTNLFLVAAHEIGHSL 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,415,226
Number of Sequences: 62578
Number of extensions: 743316
Number of successful extensions: 2671
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2495
Number of HSP's gapped (non-prelim): 132
length of query: 676
length of database: 14,973,337
effective HSP length: 105
effective length of query: 571
effective length of database: 8,402,647
effective search space: 4797911437
effective search space used: 4797911437
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)