Query 005815
Match_columns 676
No_of_seqs 592 out of 3697
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 14:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 2E-108 4E-113 915.3 53.3 567 81-658 22-592 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 3E-106 7E-111 860.0 39.8 438 206-657 296-735 (752)
3 CHL00176 ftsH cell division pr 100.0 5E-101 1E-105 878.9 62.7 587 75-664 43-633 (638)
4 KOG0731 AAA+-type ATPase conta 100.0 3E-100 6E-105 861.4 49.8 571 81-662 163-754 (774)
5 PRK10733 hflB ATP-dependent me 100.0 3.3E-90 7.2E-95 797.4 62.4 565 82-658 30-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 1.1E-83 2.3E-88 726.2 51.4 490 160-655 2-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.8E-61 3.8E-66 500.5 19.3 261 199-459 136-397 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.2E-55 4.7E-60 524.4 30.1 308 238-572 1621-1983(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 8.2E-49 1.8E-53 431.9 25.0 247 206-455 426-675 (693)
10 KOG0727 26S proteasome regulat 100.0 7.7E-48 1.7E-52 380.9 23.7 322 130-456 76-398 (408)
11 KOG0726 26S proteasome regulat 100.0 3.2E-48 6.9E-53 390.2 14.3 296 158-458 130-430 (440)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 5.6E-47 1.2E-51 411.4 24.8 244 209-455 506-770 (802)
13 KOG0728 26S proteasome regulat 100.0 3.5E-47 7.6E-52 375.9 18.2 256 203-458 136-392 (404)
14 KOG0729 26S proteasome regulat 100.0 9.2E-47 2E-51 375.7 20.3 267 195-461 158-425 (435)
15 KOG0652 26S proteasome regulat 100.0 1.7E-46 3.6E-51 372.9 19.6 261 196-456 153-414 (424)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-44 2.2E-49 393.8 21.0 228 207-437 183-414 (802)
17 PF01434 Peptidase_M41: Peptid 100.0 2.2E-43 4.7E-48 356.1 17.3 210 443-653 1-213 (213)
18 PTZ00454 26S protease regulato 100.0 7.4E-42 1.6E-46 373.6 28.8 254 204-457 135-389 (398)
19 COG1223 Predicted ATPase (AAA+ 100.0 3.5E-42 7.7E-47 342.3 20.2 242 206-454 113-355 (368)
20 KOG0736 Peroxisome assembly fa 100.0 7.9E-42 1.7E-46 379.3 23.8 247 207-455 665-933 (953)
21 KOG0738 AAA+-type ATPase [Post 100.0 1.2E-41 2.5E-46 354.7 21.2 245 206-455 204-470 (491)
22 PRK03992 proteasome-activating 100.0 2.6E-40 5.6E-45 362.3 29.0 258 204-461 121-379 (389)
23 PTZ00361 26 proteosome regulat 100.0 2.6E-40 5.6E-45 363.8 25.6 255 203-457 172-427 (438)
24 KOG0735 AAA+-type ATPase [Post 100.0 1.2E-38 2.6E-43 351.0 23.3 229 206-437 659-888 (952)
25 KOG0651 26S proteasome regulat 100.0 1.7E-39 3.6E-44 330.5 13.3 250 206-455 124-374 (388)
26 TIGR01242 26Sp45 26S proteasom 100.0 1.4E-37 3E-42 338.6 28.2 253 202-454 110-363 (364)
27 COG0464 SpoVK ATPases of the A 100.0 4.9E-38 1.1E-42 355.3 25.2 245 207-454 235-483 (494)
28 TIGR01243 CDC48 AAA family ATP 100.0 1E-37 2.2E-42 367.6 26.6 246 208-455 447-711 (733)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 4.5E-37 9.7E-42 342.8 27.6 242 208-456 222-465 (489)
30 KOG0739 AAA+-type ATPase [Post 100.0 2.9E-38 6.2E-43 319.3 13.7 227 205-437 124-353 (439)
31 KOG0737 AAA+-type ATPase [Post 100.0 1.9E-36 4.2E-41 316.1 20.0 225 208-437 86-314 (386)
32 TIGR03689 pup_AAA proteasome A 100.0 2.3E-34 5E-39 320.7 26.0 254 204-459 172-483 (512)
33 KOG0741 AAA+-type ATPase [Post 100.0 5E-33 1.1E-37 298.5 15.4 250 205-456 210-492 (744)
34 PLN00020 ribulose bisphosphate 100.0 1.1E-31 2.3E-36 283.3 23.4 262 209-484 110-394 (413)
35 KOG0730 AAA+-type ATPase [Post 100.0 3.2E-32 6.8E-37 301.0 20.2 237 209-456 180-418 (693)
36 TIGR01243 CDC48 AAA family ATP 100.0 7.4E-31 1.6E-35 309.4 29.1 247 208-457 172-438 (733)
37 KOG0732 AAA+-type ATPase conta 100.0 2.4E-31 5.1E-36 308.9 19.8 249 207-458 258-529 (1080)
38 KOG0740 AAA+-type ATPase [Post 100.0 5.1E-30 1.1E-34 276.8 16.5 242 207-454 146-404 (428)
39 KOG0743 AAA+-type ATPase [Post 99.9 1.4E-21 3E-26 210.1 17.8 210 207-426 194-412 (457)
40 CHL00181 cbbX CbbX; Provisiona 99.9 1E-20 2.2E-25 199.4 22.1 210 213-435 22-255 (287)
41 TIGR02881 spore_V_K stage V sp 99.9 2.4E-20 5.3E-25 194.2 21.6 210 212-435 4-239 (261)
42 PF00004 AAA: ATPase family as 99.9 4.4E-21 9.6E-26 177.0 13.6 130 250-383 1-132 (132)
43 TIGR02880 cbbX_cfxQ probable R 99.9 2.1E-20 4.6E-25 196.9 19.8 211 213-436 20-255 (284)
44 KOG0742 AAA+-type ATPase [Post 99.9 1.8E-20 4E-25 197.0 18.4 232 209-451 350-609 (630)
45 KOG0735 AAA+-type ATPase [Post 99.8 1.4E-18 3E-23 193.2 23.1 262 214-486 408-684 (952)
46 KOG0744 AAA+-type ATPase [Post 99.8 5.4E-19 1.2E-23 181.8 14.5 237 213-453 141-413 (423)
47 PF05496 RuvB_N: Holliday junc 99.8 2.3E-18 4.9E-23 172.2 18.0 192 208-431 18-226 (233)
48 PRK00080 ruvB Holliday junctio 99.8 3.1E-18 6.7E-23 184.2 20.4 221 205-454 16-250 (328)
49 KOG0736 Peroxisome assembly fa 99.8 3.3E-18 7.1E-23 191.9 19.6 222 228-455 412-654 (953)
50 TIGR00635 ruvB Holliday juncti 99.8 6.9E-18 1.5E-22 179.3 20.0 210 212-453 2-228 (305)
51 COG0464 SpoVK ATPases of the A 99.8 3E-17 6.5E-22 186.1 23.4 219 233-456 4-228 (494)
52 COG2255 RuvB Holliday junction 99.7 8.9E-17 1.9E-21 163.7 18.7 214 209-454 21-251 (332)
53 PRK04195 replication factor C 99.7 1.9E-16 4.1E-21 178.9 20.3 212 203-451 3-222 (482)
54 TIGR02639 ClpA ATP-dependent C 99.7 1E-16 2.3E-21 189.2 18.3 223 209-455 177-430 (731)
55 TIGR02902 spore_lonB ATP-depen 99.7 2.6E-16 5.6E-21 179.2 19.7 216 203-452 54-330 (531)
56 PRK14956 DNA polymerase III su 99.7 3.7E-16 8.1E-21 172.9 19.8 207 204-451 8-243 (484)
57 TIGR00763 lon ATP-dependent pr 99.7 2.3E-16 4.9E-21 187.4 19.4 163 215-397 321-505 (775)
58 PRK00149 dnaA chromosomal repl 99.7 5.5E-16 1.2E-20 173.7 21.0 223 208-455 116-350 (450)
59 COG2256 MGS1 ATPase related to 99.7 2E-16 4.3E-21 168.0 16.1 242 209-492 19-283 (436)
60 TIGR00362 DnaA chromosomal rep 99.7 1E-15 2.3E-20 169.3 22.7 242 208-485 104-358 (405)
61 PRK14962 DNA polymerase III su 99.7 5.6E-16 1.2E-20 173.5 20.4 207 205-452 5-240 (472)
62 PRK07003 DNA polymerase III su 99.7 7.6E-16 1.6E-20 176.3 19.1 205 204-449 6-239 (830)
63 PRK11034 clpA ATP-dependent Cl 99.7 8.5E-16 1.8E-20 180.2 19.9 223 210-456 182-435 (758)
64 PRK12323 DNA polymerase III su 99.7 5.3E-16 1.2E-20 175.6 17.1 206 204-450 6-245 (700)
65 PRK13342 recombination factor 99.7 2.5E-15 5.5E-20 166.6 22.3 203 205-454 3-219 (413)
66 PRK12402 replication factor C 99.7 2.9E-15 6.3E-20 161.0 21.9 214 202-452 3-247 (337)
67 PRK14961 DNA polymerase III su 99.7 2.2E-15 4.9E-20 164.3 20.8 213 204-451 6-241 (363)
68 PRK14088 dnaA chromosomal repl 99.7 2.6E-15 5.7E-20 167.4 21.2 244 207-484 98-354 (440)
69 PRK14960 DNA polymerase III su 99.7 1.6E-15 3.5E-20 172.1 19.5 206 205-451 6-240 (702)
70 PRK06645 DNA polymerase III su 99.7 2.3E-15 5E-20 169.3 20.8 218 202-451 9-253 (507)
71 PLN03025 replication factor C 99.7 2.3E-15 4.9E-20 161.4 18.4 205 203-450 2-219 (319)
72 PRK14958 DNA polymerase III su 99.7 2E-15 4.2E-20 170.8 18.4 208 203-451 5-241 (509)
73 PHA02544 44 clamp loader, smal 99.7 4.3E-15 9.3E-20 158.7 19.4 209 201-449 8-226 (316)
74 PRK06893 DNA replication initi 99.7 9.1E-15 2E-19 149.6 20.9 211 206-451 8-227 (229)
75 TIGR02928 orc1/cdc6 family rep 99.7 1.1E-14 2.4E-19 158.4 22.8 223 210-454 11-274 (365)
76 PRK14086 dnaA chromosomal repl 99.6 8E-15 1.7E-19 166.4 21.8 223 207-456 281-517 (617)
77 PRK14964 DNA polymerase III su 99.6 5.4E-15 1.2E-19 165.3 19.8 205 206-451 5-238 (491)
78 PRK08691 DNA polymerase III su 99.6 3.9E-15 8.3E-20 170.4 18.7 213 204-451 6-241 (709)
79 PRK14949 DNA polymerase III su 99.6 5.9E-15 1.3E-19 171.9 20.0 210 205-449 7-239 (944)
80 PRK07994 DNA polymerase III su 99.6 6.8E-15 1.5E-19 168.9 20.1 205 205-450 7-240 (647)
81 PRK14963 DNA polymerase III su 99.6 1.6E-14 3.4E-19 163.1 21.3 204 206-451 6-237 (504)
82 PRK14951 DNA polymerase III su 99.6 1.1E-14 2.4E-19 166.9 20.1 208 203-451 5-246 (618)
83 PRK12422 chromosomal replicati 99.6 2.6E-14 5.6E-19 159.3 22.1 227 207-456 104-345 (445)
84 TIGR03420 DnaA_homol_Hda DnaA 99.6 2.4E-14 5.2E-19 145.2 19.5 206 208-451 9-225 (226)
85 PRK08903 DnaA regulatory inact 99.6 2.9E-14 6.3E-19 145.3 19.8 204 206-452 10-224 (227)
86 PRK00411 cdc6 cell division co 99.6 3.9E-14 8.5E-19 155.8 21.8 223 210-454 26-282 (394)
87 TIGR02397 dnaX_nterm DNA polym 99.6 3.2E-14 6.9E-19 154.2 20.3 208 203-451 3-239 (355)
88 PRK05563 DNA polymerase III su 99.6 2.9E-14 6.3E-19 163.2 20.7 205 205-450 7-240 (559)
89 PRK13341 recombination factor 99.6 2E-14 4.4E-19 167.9 19.6 212 204-454 18-247 (725)
90 PRK14969 DNA polymerase III su 99.6 1.8E-14 4E-19 163.8 18.8 207 204-451 6-241 (527)
91 PRK14959 DNA polymerase III su 99.6 2.5E-14 5.5E-19 163.0 18.8 207 204-451 6-241 (624)
92 PRK14087 dnaA chromosomal repl 99.6 8.1E-14 1.8E-18 155.8 22.5 190 248-454 142-348 (450)
93 PRK14957 DNA polymerase III su 99.6 3.6E-14 7.9E-19 160.7 19.6 206 204-450 6-240 (546)
94 PRK08084 DNA replication initi 99.6 1E-13 2.2E-18 142.4 20.6 207 206-451 14-233 (235)
95 TIGR03345 VI_ClpV1 type VI sec 99.6 4.4E-14 9.5E-19 168.6 19.8 218 209-451 182-428 (852)
96 PRK07133 DNA polymerase III su 99.6 6.1E-14 1.3E-18 162.0 19.9 215 202-451 6-240 (725)
97 KOG0989 Replication factor C, 99.6 2.2E-14 4.7E-19 147.8 14.0 197 200-431 22-235 (346)
98 PRK08727 hypothetical protein; 99.6 2.4E-13 5.3E-18 139.4 21.9 210 206-453 11-230 (233)
99 PRK05342 clpX ATP-dependent pr 99.6 7.1E-14 1.5E-18 154.0 18.7 220 213-435 69-379 (412)
100 PRK14970 DNA polymerase III su 99.6 5.9E-14 1.3E-18 153.3 18.0 208 203-451 6-230 (367)
101 PRK14965 DNA polymerase III su 99.6 7.7E-14 1.7E-18 160.4 19.1 205 205-450 7-240 (576)
102 PRK05896 DNA polymerase III su 99.6 7E-14 1.5E-18 158.7 18.3 207 203-450 5-240 (605)
103 CHL00095 clpC Clp protease ATP 99.6 1.4E-13 3.1E-18 164.6 21.9 184 210-419 175-381 (821)
104 PRK14953 DNA polymerase III su 99.6 1.4E-13 3.1E-18 154.9 20.7 213 204-451 6-241 (486)
105 PRK14952 DNA polymerase III su 99.6 9.6E-14 2.1E-18 158.6 19.2 206 206-451 5-241 (584)
106 PRK07764 DNA polymerase III su 99.6 8.1E-14 1.7E-18 164.8 19.0 206 205-450 6-242 (824)
107 KOG2028 ATPase related to the 99.6 5.4E-14 1.2E-18 147.0 15.3 209 207-453 131-367 (554)
108 PRK07940 DNA polymerase III su 99.6 9.6E-14 2.1E-18 152.3 18.1 185 212-426 3-214 (394)
109 PRK08451 DNA polymerase III su 99.6 1.7E-13 3.6E-18 154.7 20.4 206 204-450 4-238 (535)
110 PRK05642 DNA replication initi 99.6 3.6E-13 7.7E-18 138.3 20.7 214 205-451 10-232 (234)
111 PRK10865 protein disaggregatio 99.5 5.1E-14 1.1E-18 168.5 15.6 166 209-399 173-356 (857)
112 PRK00440 rfc replication facto 99.5 3.3E-13 7.2E-18 143.8 20.2 207 202-451 5-223 (319)
113 PRK09111 DNA polymerase III su 99.5 2.8E-13 6E-18 155.6 20.6 215 202-451 12-254 (598)
114 PRK06647 DNA polymerase III su 99.5 2.8E-13 6E-18 154.9 19.8 212 205-451 7-241 (563)
115 PRK06305 DNA polymerase III su 99.5 2.9E-13 6.4E-18 151.3 19.5 208 203-451 6-243 (451)
116 PRK14955 DNA polymerase III su 99.5 1.9E-13 4.1E-18 150.9 17.6 217 204-451 6-254 (397)
117 PF00308 Bac_DnaA: Bacterial d 99.5 2.8E-13 6.1E-18 137.7 16.8 199 208-434 2-216 (219)
118 PRK06620 hypothetical protein; 99.5 3.6E-13 7.8E-18 136.4 17.5 197 207-451 9-213 (214)
119 COG0593 DnaA ATPase involved i 99.5 7.3E-13 1.6E-17 144.1 20.6 227 207-458 80-317 (408)
120 COG0466 Lon ATP-dependent Lon 99.5 1.3E-13 2.8E-18 155.3 14.9 165 214-398 323-509 (782)
121 KOG2004 Mitochondrial ATP-depe 99.5 8.1E-14 1.8E-18 156.0 12.2 167 210-398 407-597 (906)
122 PTZ00112 origin recognition co 99.5 9.4E-13 2E-17 151.6 20.7 214 214-455 755-1007(1164)
123 PRK14954 DNA polymerase III su 99.5 7.4E-13 1.6E-17 152.3 19.8 216 205-451 7-254 (620)
124 PRK14948 DNA polymerase III su 99.5 1E-12 2.2E-17 151.9 20.9 210 205-450 7-241 (620)
125 PRK10787 DNA-binding ATP-depen 99.5 3.8E-13 8.3E-18 159.0 17.7 164 214-398 322-507 (784)
126 PRK14950 DNA polymerase III su 99.5 9.2E-13 2E-17 152.1 20.1 212 205-451 7-242 (585)
127 TIGR00390 hslU ATP-dependent p 99.5 6.3E-13 1.4E-17 144.5 17.3 175 215-393 13-342 (441)
128 TIGR03346 chaperone_ClpB ATP-d 99.5 3.2E-13 6.9E-18 162.1 16.5 203 209-436 168-398 (852)
129 TIGR00382 clpX endopeptidase C 99.5 7.5E-13 1.6E-17 145.4 17.8 219 216-436 79-386 (413)
130 PRK05201 hslU ATP-dependent pr 99.5 8.4E-13 1.8E-17 143.6 16.8 175 216-394 17-345 (443)
131 COG2812 DnaX DNA polymerase II 99.5 5.6E-13 1.2E-17 148.9 15.2 208 206-448 8-238 (515)
132 TIGR02640 gas_vesic_GvpN gas v 99.5 2.8E-12 6.1E-17 133.9 19.6 190 248-456 22-259 (262)
133 PF05673 DUF815: Protein of un 99.5 2.6E-12 5.6E-17 130.5 18.4 193 206-428 19-243 (249)
134 PRK13407 bchI magnesium chelat 99.4 5.9E-13 1.3E-17 142.9 13.4 218 209-455 3-307 (334)
135 PRK09087 hypothetical protein; 99.4 2.7E-12 5.8E-17 131.1 15.5 205 205-454 12-222 (226)
136 PRK14971 DNA polymerase III su 99.4 5.6E-12 1.2E-16 145.7 19.7 207 204-451 7-243 (614)
137 CHL00081 chlI Mg-protoporyphyr 99.4 2.1E-12 4.6E-17 139.0 14.7 222 208-457 11-325 (350)
138 COG1224 TIP49 DNA helicase TIP 99.4 6.7E-12 1.4E-16 131.6 17.1 128 307-454 292-432 (450)
139 TIGR02903 spore_lon_C ATP-depe 99.4 9.1E-12 2E-16 144.3 19.9 218 208-453 148-429 (615)
140 PRK11034 clpA ATP-dependent Cl 99.4 6.9E-12 1.5E-16 147.5 18.5 163 216-398 460-667 (758)
141 COG1474 CDC6 Cdc6-related prot 99.4 2.1E-11 4.5E-16 132.7 20.8 219 211-454 14-265 (366)
142 TIGR02639 ClpA ATP-dependent C 99.4 6.9E-12 1.5E-16 148.6 18.3 197 215-431 455-708 (731)
143 TIGR02030 BchI-ChlI magnesium 99.4 8.4E-12 1.8E-16 134.3 16.6 214 212-456 2-311 (337)
144 COG3829 RocR Transcriptional r 99.4 8.9E-13 1.9E-17 145.4 8.6 214 208-451 239-495 (560)
145 PRK15424 propionate catabolism 99.4 1.9E-12 4.1E-17 147.0 10.9 264 211-505 216-535 (538)
146 KOG1969 DNA replication checkp 99.3 2.5E-11 5.5E-16 136.7 17.3 215 200-439 257-520 (877)
147 TIGR02442 Cob-chelat-sub cobal 99.3 1.4E-11 3.1E-16 143.4 15.3 212 212-455 2-305 (633)
148 cd00009 AAA The AAA+ (ATPases 99.3 3.3E-11 7.1E-16 111.3 14.2 120 247-382 19-150 (151)
149 TIGR02329 propionate_PrpR prop 99.3 1.1E-11 2.4E-16 140.7 12.4 214 210-451 208-467 (526)
150 PF05621 TniB: Bacterial TniB 99.3 1.6E-10 3.4E-15 121.0 18.9 217 215-450 35-285 (302)
151 TIGR01650 PD_CobS cobaltochela 99.3 1.2E-11 2.6E-16 131.4 10.7 138 247-398 64-234 (327)
152 PRK11388 DNA-binding transcrip 99.3 2E-11 4.4E-16 142.8 13.3 262 210-506 321-630 (638)
153 TIGR00368 Mg chelatase-related 99.3 1E-10 2.2E-15 132.1 17.6 210 210-452 188-497 (499)
154 PRK09112 DNA polymerase III su 99.3 1.9E-10 4.1E-15 124.8 18.3 189 208-428 17-242 (351)
155 TIGR03345 VI_ClpV1 type VI sec 99.2 1.5E-10 3.3E-15 138.6 18.1 195 214-431 566-827 (852)
156 PRK10820 DNA-binding transcrip 99.2 5.8E-11 1.3E-15 135.5 13.8 208 208-447 198-447 (520)
157 TIGR03346 chaperone_ClpB ATP-d 99.2 1.8E-10 3.9E-15 138.6 18.4 202 214-434 565-825 (852)
158 TIGR03015 pepcterm_ATPase puta 99.2 7.1E-10 1.5E-14 115.5 20.6 190 249-454 45-266 (269)
159 PHA02244 ATPase-like protein 99.2 2.9E-10 6.2E-15 122.3 17.7 155 212-393 95-269 (383)
160 TIGR01817 nifA Nif-specific re 99.2 4.3E-11 9.3E-16 137.2 11.4 208 208-449 190-440 (534)
161 PRK07471 DNA polymerase III su 99.2 3.9E-10 8.4E-15 122.9 17.7 185 208-426 13-238 (365)
162 COG2607 Predicted ATPase (AAA+ 99.2 1.1E-09 2.3E-14 109.9 19.1 167 207-403 53-245 (287)
163 PRK10865 protein disaggregatio 99.2 5.7E-10 1.2E-14 134.0 19.3 167 213-399 567-781 (857)
164 COG2204 AtoC Response regulato 99.2 9.1E-11 2E-15 129.7 11.5 207 210-449 137-386 (464)
165 KOG0991 Replication factor C, 99.2 1.4E-10 2.9E-15 115.6 11.3 206 203-451 16-234 (333)
166 PRK11608 pspF phage shock prot 99.2 2.1E-10 4.5E-15 123.6 13.5 194 212-434 4-240 (326)
167 TIGR02974 phageshock_pspF psp 99.2 2.5E-10 5.4E-15 123.0 14.0 199 216-446 1-242 (329)
168 CHL00095 clpC Clp protease ATP 99.2 5.7E-10 1.2E-14 133.9 18.4 165 214-398 509-733 (821)
169 KOG1942 DNA helicase, TBP-inte 99.2 1.4E-09 3.1E-14 111.4 18.4 130 306-455 296-439 (456)
170 PRK05022 anaerobic nitric oxid 99.2 2.1E-10 4.6E-15 130.7 13.8 196 212-435 185-421 (509)
171 COG0714 MoxR-like ATPases [Gen 99.1 5.8E-10 1.3E-14 120.3 15.5 133 248-396 44-202 (329)
172 PRK13531 regulatory ATPase Rav 99.1 1.8E-09 4E-14 119.9 19.5 211 216-457 22-286 (498)
173 COG0542 clpA ATP-binding subun 99.1 2.3E-10 5E-15 132.7 12.9 158 215-397 492-705 (786)
174 smart00382 AAA ATPases associa 99.1 2.8E-10 6.1E-15 103.9 10.9 126 247-384 2-147 (148)
175 TIGR00678 holB DNA polymerase 99.1 7.8E-10 1.7E-14 109.5 14.8 144 245-417 12-183 (188)
176 TIGR00602 rad24 checkpoint pro 99.1 8.5E-10 1.8E-14 127.2 17.1 226 200-451 70-352 (637)
177 PRK05564 DNA polymerase III su 99.1 8.7E-10 1.9E-14 118.1 16.1 170 212-418 2-183 (313)
178 smart00350 MCM minichromosome 99.1 7.6E-10 1.6E-14 126.1 15.0 219 215-454 204-504 (509)
179 COG3604 FhlA Transcriptional r 99.1 3.7E-10 8.1E-15 123.4 11.8 197 210-434 219-456 (550)
180 COG1221 PspF Transcriptional r 99.1 4.6E-10 1E-14 122.1 11.4 199 210-435 74-310 (403)
181 PRK15429 formate hydrogenlyase 99.1 1.3E-09 2.9E-14 128.5 16.2 197 210-434 372-609 (686)
182 PRK07399 DNA polymerase III su 99.1 4.8E-09 1E-13 112.3 18.7 183 212-428 2-223 (314)
183 TIGR02031 BchD-ChlD magnesium 99.1 1.8E-09 3.9E-14 124.8 16.5 189 248-455 17-259 (589)
184 PF01078 Mg_chelatase: Magnesi 99.1 1.5E-10 3.3E-15 115.3 6.6 120 212-362 1-159 (206)
185 PRK09862 putative ATP-dependen 99.1 2.4E-09 5.2E-14 120.6 16.9 209 211-452 188-490 (506)
186 COG0542 clpA ATP-binding subun 99.1 4E-09 8.7E-14 122.5 18.5 167 208-398 164-347 (786)
187 TIGR00764 lon_rel lon-related 99.1 3.8E-09 8.1E-14 122.4 18.3 102 352-455 268-392 (608)
188 PF06068 TIP49: TIP49 C-termin 99.1 2.6E-09 5.7E-14 114.0 15.5 67 211-284 21-89 (398)
189 COG1219 ClpX ATP-dependent pro 99.1 4.4E-10 9.5E-15 116.6 8.8 130 216-347 63-203 (408)
190 COG0470 HolB ATPase involved i 99.1 4E-09 8.7E-14 112.5 16.7 150 214-394 1-178 (325)
191 PRK11331 5-methylcytosine-spec 99.0 1.9E-09 4E-14 118.9 13.9 141 213-383 174-357 (459)
192 PRK04132 replication factor C 99.0 3.9E-09 8.5E-14 124.8 17.4 170 250-450 567-750 (846)
193 PF07728 AAA_5: AAA domain (dy 99.0 2.1E-10 4.6E-15 107.7 5.1 113 249-375 1-139 (139)
194 TIGR02915 PEP_resp_reg putativ 99.0 7.2E-10 1.6E-14 124.1 9.5 258 212-505 137-443 (445)
195 KOG0741 AAA+-type ATPase [Post 99.0 7E-09 1.5E-13 113.6 15.6 141 248-394 539-683 (744)
196 PRK11361 acetoacetate metaboli 99.0 4.3E-09 9.3E-14 118.2 14.1 206 212-451 141-390 (457)
197 COG1220 HslU ATP-dependent pro 99.0 3.4E-09 7.4E-14 110.8 12.0 83 308-394 252-346 (444)
198 COG0606 Predicted ATPase with 99.0 1.7E-09 3.6E-14 118.5 10.1 210 210-452 175-483 (490)
199 PRK15115 response regulator Gl 99.0 1.3E-09 2.8E-14 122.0 8.6 232 248-507 158-438 (444)
200 PRK05707 DNA polymerase III su 98.9 1.2E-08 2.6E-13 109.9 14.5 150 244-418 19-196 (328)
201 PF07724 AAA_2: AAA domain (Cd 98.9 2E-09 4.3E-14 105.4 7.5 109 249-364 5-132 (171)
202 COG1239 ChlI Mg-chelatase subu 98.9 8.8E-09 1.9E-13 111.4 12.9 160 210-398 13-233 (423)
203 PF00158 Sigma54_activat: Sigm 98.9 5.7E-09 1.2E-13 101.8 10.4 123 216-362 1-144 (168)
204 PRK08116 hypothetical protein; 98.9 1E-08 2.2E-13 107.5 13.0 123 247-386 114-251 (268)
205 KOG0990 Replication factor C, 98.9 1E-08 2.3E-13 106.8 12.6 201 199-436 26-239 (360)
206 PRK08058 DNA polymerase III su 98.9 9.5E-09 2E-13 110.9 12.3 149 212-395 3-180 (329)
207 KOG1514 Origin recognition com 98.8 6.6E-08 1.4E-12 109.5 16.8 193 249-456 424-657 (767)
208 PRK10923 glnG nitrogen regulat 98.8 3E-08 6.5E-13 111.9 14.0 209 212-451 136-385 (469)
209 PRK12377 putative replication 98.8 5E-08 1.1E-12 101.0 13.7 101 247-362 101-206 (248)
210 smart00763 AAA_PrkA PrkA AAA d 98.8 5.4E-08 1.2E-12 104.8 14.1 82 212-300 48-142 (361)
211 PRK07952 DNA replication prote 98.8 7.4E-08 1.6E-12 99.4 13.8 132 209-362 67-205 (244)
212 PF13177 DNA_pol3_delta2: DNA 98.8 4.6E-08 9.9E-13 94.9 11.0 133 218-383 1-160 (162)
213 PRK08181 transposase; Validate 98.8 1.2E-07 2.7E-12 99.2 15.0 100 247-362 106-209 (269)
214 PRK06964 DNA polymerase III su 98.7 6.6E-08 1.4E-12 104.4 12.6 135 243-396 17-203 (342)
215 KOG2035 Replication factor C, 98.7 2.2E-07 4.8E-12 95.2 15.5 179 203-417 2-220 (351)
216 PTZ00111 DNA replication licen 98.7 1.6E-07 3.4E-12 111.0 16.6 157 215-392 451-652 (915)
217 PRK13765 ATP-dependent proteas 98.7 6.8E-08 1.5E-12 111.9 12.6 99 352-453 277-399 (637)
218 KOG0745 Putative ATP-dependent 98.7 4.6E-08 1E-12 105.3 9.9 98 249-346 228-331 (564)
219 TIGR01818 ntrC nitrogen regula 98.7 8E-08 1.7E-12 108.1 12.2 208 213-451 133-381 (463)
220 PF03215 Rad17: Rad17 cell cyc 98.7 3.3E-07 7.2E-12 104.1 16.3 212 200-435 5-269 (519)
221 PRK08939 primosomal protein Dn 98.7 1.8E-07 3.9E-12 99.9 13.0 101 246-362 155-261 (306)
222 PRK13406 bchD magnesium chelat 98.6 1.8E-07 3.9E-12 107.7 12.9 188 248-455 26-251 (584)
223 PRK08769 DNA polymerase III su 98.6 8E-07 1.7E-11 95.2 16.9 153 244-420 23-203 (319)
224 PRK10365 transcriptional regul 98.6 1E-07 2.2E-12 106.5 10.5 203 215-451 140-386 (441)
225 PRK06871 DNA polymerase III su 98.6 4.5E-07 9.7E-12 97.3 14.8 130 244-396 21-178 (325)
226 KOG2680 DNA helicase TIP49, TB 98.6 8.3E-07 1.8E-11 91.8 15.8 129 307-455 289-430 (454)
227 PRK06526 transposase; Provisio 98.6 1.6E-07 3.5E-12 97.7 10.6 100 247-362 98-201 (254)
228 PRK07993 DNA polymerase III su 98.6 5E-07 1.1E-11 97.6 13.4 149 244-418 21-197 (334)
229 COG3284 AcoR Transcriptional a 98.6 8.9E-08 1.9E-12 108.0 7.8 229 249-506 338-604 (606)
230 PF07726 AAA_3: ATPase family 98.6 1.5E-08 3.2E-13 93.6 0.7 111 249-375 1-129 (131)
231 COG3283 TyrR Transcriptional r 98.5 1.1E-06 2.3E-11 92.9 13.8 208 208-448 198-443 (511)
232 PF01637 Arch_ATPase: Archaeal 98.5 9.1E-07 2E-11 89.0 12.9 164 247-423 20-231 (234)
233 PRK06835 DNA replication prote 98.5 7.4E-07 1.6E-11 96.0 12.4 99 248-361 184-288 (329)
234 PF14532 Sigma54_activ_2: Sigm 98.5 1.9E-07 4.1E-12 87.9 6.7 106 217-361 1-109 (138)
235 PF13173 AAA_14: AAA domain 98.5 1.1E-06 2.3E-11 81.7 11.4 120 248-388 3-126 (128)
236 PRK09183 transposase/IS protei 98.5 9E-07 2E-11 92.4 11.8 71 247-318 102-176 (259)
237 PRK08699 DNA polymerase III su 98.5 7.2E-07 1.6E-11 96.0 11.0 133 244-395 18-183 (325)
238 PRK06090 DNA polymerase III su 98.5 2E-06 4.3E-11 92.2 13.9 130 244-395 22-178 (319)
239 COG1484 DnaC DNA replication p 98.5 1.6E-06 3.5E-11 90.2 12.8 71 247-318 105-179 (254)
240 PRK06921 hypothetical protein; 98.4 1.6E-06 3.5E-11 90.8 12.2 68 247-317 117-188 (266)
241 PF01695 IstB_IS21: IstB-like 98.4 5.9E-07 1.3E-11 88.5 7.8 101 246-362 46-150 (178)
242 KOG2227 Pre-initiation complex 98.4 7.1E-06 1.5E-10 89.7 16.5 202 214-437 150-382 (529)
243 KOG1051 Chaperone HSP104 and r 98.4 2.1E-06 4.6E-11 101.5 12.3 128 215-362 563-711 (898)
244 KOG1970 Checkpoint RAD17-RFC c 98.4 4.7E-06 1E-10 92.5 14.1 211 200-434 68-320 (634)
245 PF13401 AAA_22: AAA domain; P 98.3 3.2E-06 7E-11 77.8 9.8 85 248-345 5-113 (131)
246 cd01120 RecA-like_NTPases RecA 98.3 3.3E-06 7.1E-11 79.9 9.4 110 250-363 2-138 (165)
247 COG3267 ExeA Type II secretory 98.2 3.6E-05 7.8E-10 78.7 16.2 183 250-448 54-267 (269)
248 PF05729 NACHT: NACHT domain 98.2 1.3E-05 2.9E-10 76.2 12.5 142 249-399 2-165 (166)
249 PF12775 AAA_7: P-loop contain 98.2 5.3E-06 1.1E-10 87.3 8.6 137 248-398 34-194 (272)
250 TIGR02237 recomb_radB DNA repa 98.2 9.4E-06 2E-10 81.5 9.9 112 248-362 13-150 (209)
251 PF12774 AAA_6: Hydrolytic ATP 98.1 2E-05 4.3E-10 80.9 12.2 126 247-393 32-176 (231)
252 COG1241 MCM2 Predicted ATPase 98.1 5.9E-06 1.3E-10 95.7 8.7 219 214-454 286-592 (682)
253 PF03969 AFG1_ATPase: AFG1-lik 98.1 9.9E-06 2.2E-10 88.4 9.8 140 244-410 59-206 (362)
254 PLN03210 Resistant to P. syrin 98.1 5.7E-05 1.2E-09 94.5 16.7 179 209-420 179-390 (1153)
255 COG4619 ABC-type uncharacteriz 98.1 3.2E-05 6.9E-10 74.4 10.9 62 303-383 148-209 (223)
256 KOG0480 DNA replication licens 98.0 3.8E-05 8.3E-10 86.6 12.5 221 213-454 344-643 (764)
257 PF00931 NB-ARC: NB-ARC domain 98.0 8.5E-05 1.8E-09 77.9 14.7 173 224-426 3-202 (287)
258 KOG0478 DNA replication licens 98.0 0.00016 3.5E-09 82.3 15.7 153 215-387 430-616 (804)
259 cd01124 KaiC KaiC is a circadi 98.0 6.2E-05 1.3E-09 73.8 11.1 102 250-362 2-140 (187)
260 PRK05917 DNA polymerase III su 98.0 5.6E-05 1.2E-09 79.8 11.4 122 244-384 16-154 (290)
261 KOG1968 Replication factor C, 97.9 1.5E-05 3.3E-10 94.9 7.8 209 201-433 307-535 (871)
262 PF00493 MCM: MCM2/3/5 family 97.9 9.9E-06 2.1E-10 87.6 4.9 184 249-454 59-326 (331)
263 PRK11823 DNA repair protein Ra 97.9 7.2E-05 1.6E-09 84.1 11.4 78 244-321 77-171 (446)
264 cd01121 Sms Sms (bacterial rad 97.9 7.1E-05 1.5E-09 82.1 10.5 74 247-320 82-172 (372)
265 cd03216 ABC_Carb_Monos_I This 97.8 3.2E-05 7E-10 74.9 6.1 103 249-365 28-145 (163)
266 PRK09361 radB DNA repair and r 97.8 0.00011 2.4E-09 74.7 10.3 116 244-361 20-161 (225)
267 KOG0482 DNA replication licens 97.8 4.8E-05 1E-09 83.7 7.7 222 215-455 343-639 (721)
268 cd03238 ABC_UvrA The excision 97.8 0.00015 3.2E-09 71.5 10.5 121 241-382 13-162 (176)
269 PRK07276 DNA polymerase III su 97.8 0.00056 1.2E-08 72.5 15.2 128 245-394 22-172 (290)
270 PRK05818 DNA polymerase III su 97.8 0.00044 9.6E-09 71.8 14.0 120 246-384 6-147 (261)
271 COG1116 TauB ABC-type nitrate/ 97.8 0.00012 2.7E-09 74.8 9.8 32 240-271 20-53 (248)
272 cd03283 ABC_MutS-like MutS-lik 97.7 0.00015 3.3E-09 72.7 10.0 106 248-366 26-152 (199)
273 TIGR02012 tigrfam_recA protein 97.7 0.00021 4.5E-09 76.7 11.5 117 244-360 52-190 (321)
274 TIGR02858 spore_III_AA stage I 97.7 0.00011 2.4E-09 77.1 9.2 113 248-382 112-256 (270)
275 COG1485 Predicted ATPase [Gene 97.7 8.7E-05 1.9E-09 79.2 7.9 163 218-408 29-207 (367)
276 PRK07132 DNA polymerase III su 97.7 0.00045 9.8E-09 73.6 13.1 125 245-395 16-160 (299)
277 TIGR01618 phage_P_loop phage n 97.7 8.8E-05 1.9E-09 75.5 7.2 72 247-320 12-95 (220)
278 COG1120 FepC ABC-type cobalami 97.7 9.1E-05 2E-09 76.8 7.3 60 291-363 141-200 (258)
279 PF00910 RNA_helicase: RNA hel 97.7 0.00014 3E-09 65.5 7.4 22 250-271 1-22 (107)
280 PRK08533 flagellar accessory p 97.7 0.00034 7.4E-09 71.8 11.3 72 248-319 25-130 (230)
281 cd01394 radB RadB. The archaea 97.7 0.00037 7.9E-09 70.5 11.4 114 247-362 19-158 (218)
282 PRK06067 flagellar accessory p 97.7 0.00026 5.7E-09 72.5 10.4 39 243-281 21-62 (234)
283 COG1618 Predicted nucleotide k 97.6 0.00024 5.2E-09 68.1 9.0 25 247-271 5-29 (179)
284 PHA00729 NTP-binding motif con 97.6 0.00011 2.3E-09 75.0 6.8 24 249-272 19-42 (226)
285 cd03228 ABCC_MRP_Like The MRP 97.6 0.00015 3.2E-09 70.8 7.6 102 249-365 30-158 (171)
286 cd03223 ABCD_peroxisomal_ALDP 97.6 0.00028 6E-09 68.6 9.1 98 249-363 29-149 (166)
287 TIGR02688 conserved hypothetic 97.6 0.0014 3E-08 72.3 15.2 60 248-319 210-273 (449)
288 PRK08118 topology modulation p 97.6 0.00011 2.5E-09 71.6 6.2 34 249-282 3-36 (167)
289 COG1136 SalX ABC-type antimicr 97.6 0.00045 9.8E-09 70.3 10.4 69 294-382 148-216 (226)
290 COG2274 SunT ABC-type bacterio 97.6 0.0002 4.4E-09 84.4 8.9 71 291-383 612-682 (709)
291 TIGR00416 sms DNA repair prote 97.6 0.00043 9.3E-09 78.0 11.1 74 247-320 94-184 (454)
292 cd00983 recA RecA is a bacter 97.5 0.00037 8E-09 74.9 10.0 113 248-360 56-190 (325)
293 PF13207 AAA_17: AAA domain; P 97.5 6.4E-05 1.4E-09 68.4 3.6 30 250-279 2-31 (121)
294 cd03246 ABCC_Protease_Secretio 97.5 0.00027 6E-09 69.0 8.0 109 243-365 22-159 (173)
295 COG4178 ABC-type uncharacteriz 97.5 0.00017 3.7E-09 82.6 7.4 57 293-364 520-576 (604)
296 PRK00131 aroK shikimate kinase 97.5 0.00033 7.2E-09 67.6 8.5 34 246-279 3-36 (175)
297 cd03247 ABCC_cytochrome_bd The 97.5 0.00033 7.1E-09 68.7 8.4 109 242-365 21-160 (178)
298 KOG2170 ATPase of the AAA+ sup 97.5 0.0027 5.9E-08 66.5 15.4 91 216-318 84-190 (344)
299 cd01131 PilT Pilus retraction 97.5 0.00035 7.6E-09 70.0 8.6 66 250-315 4-83 (198)
300 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.0007 1.5E-08 68.7 10.8 113 247-369 29-161 (213)
301 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 0.00041 8.9E-09 71.7 9.0 60 292-365 143-202 (254)
302 PRK09376 rho transcription ter 97.5 0.00041 8.9E-09 75.8 9.1 109 250-358 172-316 (416)
303 COG1127 Ttg2A ABC-type transpo 97.5 0.00014 3.1E-09 73.8 5.1 37 235-271 20-58 (263)
304 COG1373 Predicted ATPase (AAA+ 97.5 0.0012 2.6E-08 73.3 12.9 123 249-391 39-161 (398)
305 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00058 1.2E-08 67.3 9.3 104 249-365 27-135 (177)
306 PRK13949 shikimate kinase; Pro 97.5 0.00078 1.7E-08 65.8 10.1 31 249-279 3-33 (169)
307 cd01128 rho_factor Transcripti 97.5 0.001 2.2E-08 69.2 11.5 111 249-359 18-164 (249)
308 PRK14722 flhF flagellar biosyn 97.5 0.0004 8.8E-09 76.0 8.9 108 247-369 137-266 (374)
309 COG1126 GlnQ ABC-type polar am 97.4 0.00017 3.6E-09 72.4 5.3 32 238-269 17-50 (240)
310 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00066 1.4E-08 64.4 9.3 98 249-365 28-130 (144)
311 PRK07261 topology modulation p 97.4 0.00019 4E-09 70.3 5.6 34 250-283 3-36 (171)
312 PF05707 Zot: Zonular occluden 97.4 0.00017 3.6E-09 72.0 5.3 123 250-384 3-146 (193)
313 KOG2228 Origin recognition com 97.4 0.0011 2.5E-08 70.2 11.4 160 215-397 25-219 (408)
314 cd01393 recA_like RecA is a b 97.4 0.00048 1E-08 69.9 8.4 117 243-360 15-167 (226)
315 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00028 6E-09 67.7 6.2 104 249-366 27-144 (157)
316 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00044 9.5E-09 70.6 8.0 116 244-360 16-168 (235)
317 COG5271 MDN1 AAA ATPase contai 97.4 0.00044 9.6E-09 84.4 8.8 135 246-398 1542-1704(4600)
318 PF13671 AAA_33: AAA domain; P 97.4 0.00057 1.2E-08 63.9 8.1 37 250-288 2-38 (143)
319 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00083 1.8E-08 65.6 9.3 109 243-365 20-158 (173)
320 cd03215 ABC_Carb_Monos_II This 97.4 0.00053 1.2E-08 67.5 7.9 103 249-365 28-167 (182)
321 PRK11176 lipid transporter ATP 97.4 0.00045 9.7E-09 80.3 8.5 33 239-271 359-393 (582)
322 PF06480 FtsH_ext: FtsH Extrac 97.4 0.00017 3.6E-09 64.3 3.7 33 77-109 23-55 (110)
323 cd03214 ABC_Iron-Siderophores_ 97.4 0.00047 1E-08 67.8 7.3 104 249-365 27-161 (180)
324 PF14516 AAA_35: AAA-like doma 97.3 0.009 2E-07 64.7 17.7 160 249-419 33-233 (331)
325 KOG1051 Chaperone HSP104 and r 97.3 0.0014 3E-08 78.2 12.2 163 213-399 185-365 (898)
326 PRK15455 PrkA family serine pr 97.3 0.00021 4.7E-09 81.2 5.2 63 212-280 74-137 (644)
327 COG2884 FtsE Predicted ATPase 97.3 0.00054 1.2E-08 67.5 7.3 35 237-271 16-52 (223)
328 KOG0058 Peptide exporter, ABC 97.3 0.00063 1.4E-08 78.6 8.8 34 238-271 483-518 (716)
329 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0021 4.5E-08 66.2 11.9 40 243-282 17-59 (237)
330 PRK11174 cysteine/glutathione 97.3 0.00051 1.1E-08 80.0 8.3 69 292-382 489-557 (588)
331 PRK04296 thymidine kinase; Pro 97.3 0.0006 1.3E-08 67.9 7.5 69 250-318 5-90 (190)
332 cd03229 ABC_Class3 This class 97.3 0.00048 1E-08 67.6 6.7 111 242-365 19-164 (178)
333 smart00534 MUTSac ATPase domai 97.3 0.0014 3E-08 64.9 9.9 103 250-364 2-124 (185)
334 KOG2543 Origin recognition com 97.3 0.0047 1E-07 66.7 14.4 160 214-396 6-192 (438)
335 PF07693 KAP_NTPase: KAP famil 97.3 0.0061 1.3E-07 65.2 15.5 79 305-398 171-264 (325)
336 PF06745 KaiC: KaiC; InterPro 97.3 0.0012 2.7E-08 67.1 9.6 108 243-360 15-159 (226)
337 PRK09354 recA recombinase A; P 97.3 0.0016 3.4E-08 70.7 10.6 112 248-359 61-194 (349)
338 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00078 1.7E-08 68.1 7.8 30 242-271 23-54 (218)
339 TIGR02868 CydC thiol reductant 97.3 0.0013 2.9E-08 75.6 10.6 33 239-271 351-385 (529)
340 cd03232 ABC_PDR_domain2 The pl 97.2 0.0013 2.8E-08 65.4 9.2 101 249-363 35-169 (192)
341 PRK05973 replicative DNA helic 97.2 0.0021 4.5E-08 66.3 10.8 34 248-281 65-101 (237)
342 PF00437 T2SE: Type II/IV secr 97.2 0.00065 1.4E-08 71.1 7.3 101 207-317 97-208 (270)
343 PF13604 AAA_30: AAA domain; P 97.2 0.0016 3.5E-08 65.2 9.8 97 248-360 19-131 (196)
344 COG3854 SpoIIIAA ncharacterize 97.2 0.0017 3.7E-08 65.7 9.7 70 249-318 139-230 (308)
345 KOG0477 DNA replication licens 97.2 0.00076 1.6E-08 76.1 8.0 61 216-278 451-513 (854)
346 TIGR02857 CydD thiol reductant 97.2 0.00082 1.8E-08 77.2 8.7 33 239-271 338-372 (529)
347 cd01122 GP4d_helicase GP4d_hel 97.2 0.0018 3.8E-08 67.8 10.4 37 245-281 28-68 (271)
348 cd03218 ABC_YhbG The ABC trans 97.2 0.00069 1.5E-08 69.1 7.2 23 249-271 28-50 (232)
349 PRK12339 2-phosphoglycerate ki 97.2 0.0058 1.3E-07 61.3 13.6 36 247-284 3-38 (197)
350 PRK06762 hypothetical protein; 97.2 0.0012 2.7E-08 63.6 8.6 40 247-286 2-41 (166)
351 TIGR02211 LolD_lipo_ex lipopro 97.2 0.00083 1.8E-08 68.0 7.7 23 249-271 33-55 (221)
352 cd03269 ABC_putative_ATPase Th 97.2 0.0014 2.9E-08 66.0 9.1 23 249-271 28-50 (210)
353 TIGR03796 NHPM_micro_ABC1 NHPM 97.2 0.00062 1.3E-08 81.1 7.6 33 239-271 495-529 (710)
354 PRK13539 cytochrome c biogenes 97.2 0.0014 3E-08 65.9 9.0 29 243-271 22-52 (207)
355 cd03213 ABCG_EPDR ABCG transpo 97.2 0.0015 3.1E-08 65.2 9.0 101 249-363 37-172 (194)
356 TIGR03375 type_I_sec_LssB type 97.2 0.00067 1.5E-08 80.6 7.7 33 239-271 481-515 (694)
357 cd00046 DEXDc DEAD-like helica 97.2 0.0029 6.2E-08 57.3 10.2 24 248-271 1-24 (144)
358 TIGR00960 3a0501s02 Type II (G 97.2 0.0014 2.9E-08 66.3 8.6 29 243-271 23-53 (216)
359 COG4133 CcmA ABC-type transpor 97.2 0.0025 5.4E-08 62.8 9.9 53 305-371 147-199 (209)
360 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.00078 1.7E-08 80.0 7.8 33 239-271 469-503 (686)
361 TIGR02673 FtsE cell division A 97.2 0.0011 2.4E-08 66.7 7.9 29 243-271 22-52 (214)
362 KOG2383 Predicted ATPase [Gene 97.2 0.0033 7.1E-08 68.2 11.6 157 244-431 111-297 (467)
363 PRK11629 lolD lipoprotein tran 97.2 0.001 2.2E-08 68.0 7.7 29 243-271 29-59 (233)
364 PF06309 Torsin: Torsin; Inte 97.2 0.002 4.3E-08 59.7 8.7 52 214-271 25-77 (127)
365 PRK04841 transcriptional regul 97.2 0.0072 1.6E-07 73.7 16.3 151 248-419 33-219 (903)
366 cd00984 DnaB_C DnaB helicase C 97.2 0.0025 5.4E-08 65.4 10.5 38 243-280 9-50 (242)
367 COG1131 CcmA ABC-type multidru 97.2 0.0016 3.5E-08 69.3 9.3 57 297-366 145-201 (293)
368 cd03226 ABC_cobalt_CbiO_domain 97.2 0.0015 3.3E-08 65.4 8.6 23 249-271 28-50 (205)
369 cd03243 ABC_MutS_homologs The 97.1 0.0013 2.9E-08 65.8 8.1 21 249-269 31-51 (202)
370 COG4650 RtcR Sigma54-dependent 97.1 0.0032 7E-08 65.5 10.9 77 243-319 204-295 (531)
371 PRK10536 hypothetical protein; 97.1 0.0012 2.6E-08 68.6 7.8 22 249-270 76-97 (262)
372 cd03266 ABC_NatA_sodium_export 97.1 0.0015 3.2E-08 66.0 8.5 29 243-271 25-55 (218)
373 PRK10790 putative multidrug tr 97.1 0.00087 1.9E-08 78.1 7.7 33 239-271 357-391 (592)
374 cd03258 ABC_MetN_methionine_tr 97.1 0.0012 2.7E-08 67.4 7.8 23 249-271 33-55 (233)
375 TIGR02238 recomb_DMC1 meiotic 97.1 0.0015 3.2E-08 70.2 8.7 116 244-360 93-244 (313)
376 COG0563 Adk Adenylate kinase a 97.1 0.0016 3.5E-08 64.3 8.3 35 249-285 2-36 (178)
377 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.0013 2.9E-08 66.6 8.0 30 242-271 23-54 (220)
378 cd03217 ABC_FeS_Assembly ABC-t 97.1 0.00085 1.8E-08 67.1 6.4 102 249-364 28-166 (200)
379 TIGR01846 type_I_sec_HlyB type 97.1 0.0012 2.6E-08 78.5 8.6 33 239-271 473-507 (694)
380 TIGR02782 TrbB_P P-type conjug 97.1 0.00044 9.5E-09 73.8 4.4 69 247-315 132-213 (299)
381 PRK12723 flagellar biosynthesi 97.1 0.0027 5.9E-08 70.0 10.7 110 246-369 173-306 (388)
382 PF13191 AAA_16: AAA ATPase do 97.1 0.00031 6.7E-09 68.3 3.0 59 216-283 2-63 (185)
383 cd03292 ABC_FtsE_transporter F 97.1 0.0013 2.8E-08 66.2 7.6 23 249-271 29-51 (214)
384 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0025 5.5E-08 63.8 9.6 20 249-268 30-49 (200)
385 TIGR02203 MsbA_lipidA lipid A 97.1 0.0011 2.4E-08 76.8 8.0 33 239-271 348-382 (571)
386 COG1118 CysA ABC-type sulfate/ 97.1 0.0013 2.9E-08 69.1 7.6 30 242-271 21-52 (345)
387 PRK13657 cyclic beta-1,2-gluca 97.1 0.0011 2.3E-08 77.4 7.8 33 239-271 351-385 (588)
388 TIGR02204 MsbA_rel ABC transpo 97.1 0.0011 2.5E-08 76.8 8.0 31 241-271 358-390 (576)
389 cd03263 ABC_subfamily_A The AB 97.1 0.0023 4.9E-08 64.7 9.2 30 242-271 21-52 (220)
390 TIGR03410 urea_trans_UrtE urea 97.1 0.001 2.3E-08 67.8 6.7 29 243-271 20-50 (230)
391 cd01130 VirB11-like_ATPase Typ 97.1 0.00068 1.5E-08 67.1 5.1 69 247-315 25-109 (186)
392 PRK13538 cytochrome c biogenes 97.1 0.0022 4.9E-08 64.2 8.8 29 243-271 21-51 (204)
393 cd00464 SK Shikimate kinase (S 97.1 0.0011 2.3E-08 62.9 6.1 36 250-287 2-37 (154)
394 TIGR01420 pilT_fam pilus retra 97.1 0.0013 2.7E-08 71.7 7.4 67 249-315 124-204 (343)
395 PRK13537 nodulation ABC transp 97.1 0.0019 4.1E-08 69.2 8.6 54 298-365 148-201 (306)
396 PRK13543 cytochrome c biogenes 97.1 0.0023 4.9E-08 64.7 8.8 23 249-271 39-61 (214)
397 PF03266 NTPase_1: NTPase; In 97.0 0.00031 6.8E-09 68.6 2.4 22 250-271 2-23 (168)
398 COG4988 CydD ABC-type transpor 97.0 0.0027 5.8E-08 72.0 10.0 68 293-382 461-528 (559)
399 COG4618 ArpD ABC-type protease 97.0 0.0019 4.1E-08 71.9 8.7 86 293-399 477-565 (580)
400 COG2874 FlaH Predicted ATPases 97.0 0.0044 9.6E-08 62.2 10.4 126 234-371 13-176 (235)
401 TIGR03608 L_ocin_972_ABC putat 97.0 0.0025 5.4E-08 63.7 8.9 23 249-271 26-48 (206)
402 PRK13540 cytochrome c biogenes 97.0 0.0027 5.8E-08 63.5 9.1 23 249-271 29-51 (200)
403 PRK13541 cytochrome c biogenes 97.0 0.0056 1.2E-07 60.9 11.3 23 249-271 28-50 (195)
404 PRK03839 putative kinase; Prov 97.0 0.00052 1.1E-08 67.3 3.8 30 250-279 3-32 (180)
405 cd03301 ABC_MalK_N The N-termi 97.0 0.0012 2.7E-08 66.3 6.7 23 249-271 28-50 (213)
406 COG5245 DYN1 Dynein, heavy cha 97.0 0.0019 4.2E-08 78.6 9.1 179 245-436 1492-1718(3164)
407 PRK13947 shikimate kinase; Pro 97.0 0.0006 1.3E-08 66.0 4.2 31 249-279 3-33 (171)
408 PLN03187 meiotic recombination 97.0 0.002 4.3E-08 70.0 8.6 111 248-359 127-273 (344)
409 cd01129 PulE-GspE PulE/GspE Th 97.0 0.004 8.7E-08 65.3 10.6 94 210-317 56-160 (264)
410 cd03233 ABC_PDR_domain1 The pl 97.0 0.002 4.3E-08 64.6 8.1 23 249-271 35-57 (202)
411 COG1066 Sms Predicted ATP-depe 97.0 0.0044 9.5E-08 67.6 11.0 147 249-401 95-260 (456)
412 cd03259 ABC_Carb_Solutes_like 97.0 0.0015 3.2E-08 65.9 7.1 30 242-271 19-50 (213)
413 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0053 1.2E-07 64.2 11.5 38 244-281 33-73 (259)
414 PRK10789 putative multidrug tr 97.0 0.0016 3.4E-08 75.7 8.2 33 239-271 331-365 (569)
415 TIGR00958 3a01208 Conjugate Tr 97.0 0.0011 2.5E-08 78.9 7.2 33 239-271 497-531 (711)
416 TIGR02236 recomb_radA DNA repa 97.0 0.0029 6.4E-08 67.7 9.7 117 243-360 91-245 (310)
417 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0064 1.4E-07 61.8 11.7 109 243-360 12-152 (224)
418 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.007 1.5E-07 61.6 12.0 38 243-280 16-56 (229)
419 PRK13695 putative NTPase; Prov 97.0 0.0038 8.2E-08 60.9 9.6 22 250-271 3-24 (174)
420 PRK04301 radA DNA repair and r 97.0 0.0028 6.1E-08 68.2 9.4 117 243-360 98-251 (317)
421 TIGR01188 drrA daunorubicin re 97.0 0.0023 4.9E-08 68.4 8.6 54 298-365 134-187 (302)
422 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.0 0.002 4.3E-08 65.7 7.8 33 239-271 38-72 (224)
423 COG3842 PotA ABC-type spermidi 97.0 0.00081 1.8E-08 72.8 5.2 30 241-270 23-54 (352)
424 COG1117 PstB ABC-type phosphat 97.0 0.004 8.8E-08 62.5 9.5 33 237-269 21-55 (253)
425 cd03224 ABC_TM1139_LivF_branch 97.0 0.0013 2.9E-08 66.5 6.4 23 249-271 28-50 (222)
426 PRK11160 cysteine/glutathione 97.0 0.0019 4.2E-08 75.1 8.6 33 239-271 356-390 (574)
427 cd03225 ABC_cobalt_CbiO_domain 97.0 0.0016 3.4E-08 65.5 6.9 29 243-271 21-51 (211)
428 KOG3347 Predicted nucleotide k 97.0 0.0017 3.7E-08 61.5 6.5 32 248-279 8-39 (176)
429 TIGR01192 chvA glucan exporter 97.0 0.0018 3.9E-08 75.5 8.4 67 294-382 477-543 (585)
430 cd03294 ABC_Pro_Gly_Bertaine T 97.0 0.0021 4.6E-08 67.4 8.1 34 238-271 39-74 (269)
431 TIGR01193 bacteriocin_ABC ABC- 97.0 0.0013 2.9E-08 78.3 7.4 33 239-271 490-524 (708)
432 TIGR03864 PQQ_ABC_ATP ABC tran 97.0 0.0028 6.1E-08 64.9 8.8 23 249-271 29-51 (236)
433 PRK09544 znuC high-affinity zi 97.0 0.0016 3.5E-08 67.7 7.0 23 249-271 32-54 (251)
434 cd03278 ABC_SMC_barmotin Barmo 97.0 0.0046 1E-07 61.9 10.1 29 242-270 16-45 (197)
435 PRK09519 recA DNA recombinatio 97.0 0.0043 9.3E-08 73.6 11.2 115 245-359 58-194 (790)
436 PRK05800 cobU adenosylcobinami 97.0 0.0038 8.2E-08 61.2 9.2 95 249-346 3-114 (170)
437 PRK13946 shikimate kinase; Pro 97.0 0.0022 4.7E-08 63.4 7.5 35 246-280 9-43 (184)
438 cd03231 ABC_CcmA_heme_exporter 97.0 0.0032 6.8E-08 63.0 8.8 30 242-271 19-50 (201)
439 COG0703 AroK Shikimate kinase 97.0 0.0021 4.5E-08 62.7 7.2 32 248-279 3-34 (172)
440 COG1122 CbiO ABC-type cobalt t 97.0 0.0012 2.6E-08 68.0 5.8 23 249-271 32-54 (235)
441 TIGR03740 galliderm_ABC gallid 96.9 0.0029 6.3E-08 64.2 8.5 23 249-271 28-50 (223)
442 TIGR01842 type_I_sec_PrtD type 96.9 0.0021 4.6E-08 74.2 8.3 33 239-271 334-368 (544)
443 COG2805 PilT Tfp pilus assembl 96.9 0.0042 9.2E-08 65.2 9.5 140 203-388 98-252 (353)
444 PTZ00035 Rad51 protein; Provis 96.9 0.0039 8.4E-08 67.7 9.8 115 243-358 114-264 (337)
445 cd03237 ABC_RNaseL_inhibitor_d 96.9 0.0039 8.4E-08 64.7 9.4 23 249-271 27-49 (246)
446 TIGR01166 cbiO cobalt transpor 96.9 0.0043 9.3E-08 61.4 9.4 30 242-271 11-42 (190)
447 PRK00625 shikimate kinase; Pro 96.9 0.00076 1.7E-08 66.2 3.9 31 249-279 2-32 (173)
448 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0056 1.2E-07 63.4 10.6 36 250-285 2-40 (249)
449 cd03268 ABC_BcrA_bacitracin_re 96.9 0.0031 6.6E-08 63.3 8.4 23 249-271 28-50 (208)
450 PRK14974 cell division protein 96.9 0.0071 1.5E-07 65.6 11.7 72 247-318 140-234 (336)
451 COG4586 ABC-type uncharacteriz 96.9 0.0022 4.8E-08 66.4 7.3 34 238-271 39-74 (325)
452 cd03262 ABC_HisP_GlnQ_permease 96.9 0.0025 5.5E-08 64.0 7.8 23 249-271 28-50 (213)
453 TIGR02525 plasmid_TraJ plasmid 96.9 0.0038 8.3E-08 68.5 9.7 68 249-316 151-235 (372)
454 PRK11153 metN DL-methionine tr 96.9 0.0016 3.5E-08 70.8 6.8 30 242-271 24-55 (343)
455 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00077 1.7E-08 66.0 3.9 35 250-286 2-36 (183)
456 TIGR01184 ntrCD nitrate transp 96.9 0.0028 6.1E-08 64.8 8.1 23 249-271 13-35 (230)
457 cd02020 CMPK Cytidine monophos 96.9 0.0028 6E-08 59.3 7.5 30 250-279 2-31 (147)
458 PRK13644 cbiO cobalt transport 96.9 0.0025 5.3E-08 67.1 7.9 30 242-271 21-52 (274)
459 PF05272 VirE: Virulence-assoc 96.9 0.0036 7.8E-08 62.8 8.6 125 223-383 34-169 (198)
460 PRK10895 lipopolysaccharide AB 96.9 0.0017 3.7E-08 66.7 6.5 23 249-271 31-53 (241)
461 PRK10247 putative ABC transpor 96.9 0.0038 8.3E-08 63.6 8.9 29 243-271 27-57 (225)
462 PRK04328 hypothetical protein; 96.9 0.0096 2.1E-07 61.8 12.0 38 243-280 19-59 (249)
463 cd03251 ABCC_MsbA MsbA is an e 96.9 0.0046 1E-07 63.1 9.5 30 242-271 21-52 (234)
464 cd03252 ABCC_Hemolysin The ABC 96.9 0.0056 1.2E-07 62.7 10.1 29 243-271 22-52 (237)
465 cd03265 ABC_DrrA DrrA is the A 96.9 0.0031 6.7E-08 63.9 8.1 23 249-271 28-50 (220)
466 PRK13948 shikimate kinase; Pro 96.9 0.0023 5E-08 63.4 6.9 42 246-289 9-50 (182)
467 cd00227 CPT Chloramphenicol (C 96.9 0.001 2.3E-08 65.0 4.4 38 248-285 3-40 (175)
468 PRK11124 artP arginine transpo 96.9 0.0042 9E-08 63.9 9.1 23 249-271 30-52 (242)
469 TIGR02314 ABC_MetN D-methionin 96.9 0.0019 4.1E-08 70.3 6.8 56 297-365 149-204 (343)
470 PRK11248 tauB taurine transpor 96.9 0.0019 4E-08 67.3 6.4 30 242-271 20-51 (255)
471 PLN02200 adenylate kinase fami 96.9 0.0012 2.7E-08 67.9 5.0 42 243-286 39-80 (234)
472 PF04665 Pox_A32: Poxvirus A32 96.9 0.016 3.5E-07 59.8 13.1 132 247-397 13-170 (241)
473 PRK11614 livF leucine/isoleuci 96.9 0.0017 3.6E-08 66.6 6.0 23 249-271 33-55 (237)
474 cd03227 ABC_Class2 ABC-type Cl 96.9 0.0043 9.3E-08 60.0 8.5 104 248-366 22-145 (162)
475 cd03369 ABCC_NFT1 Domain 2 of 96.9 0.0042 9E-08 62.3 8.7 30 242-271 27-58 (207)
476 cd03261 ABC_Org_Solvent_Resist 96.8 0.0025 5.4E-08 65.3 7.1 30 242-271 19-50 (235)
477 PRK10908 cell division protein 96.8 0.0033 7.1E-08 63.8 7.9 23 249-271 30-52 (222)
478 PRK13536 nodulation factor exp 96.8 0.003 6.6E-08 68.7 8.1 54 299-366 183-236 (340)
479 cd02027 APSK Adenosine 5'-phos 96.8 0.0044 9.6E-08 59.2 8.3 36 250-285 2-40 (149)
480 PRK06217 hypothetical protein; 96.8 0.0011 2.3E-08 65.5 4.1 31 249-279 3-33 (183)
481 PRK14531 adenylate kinase; Pro 96.8 0.0012 2.7E-08 65.1 4.4 35 248-284 3-37 (183)
482 cd03300 ABC_PotA_N PotA is an 96.8 0.0029 6.3E-08 64.7 7.3 31 241-271 18-50 (232)
483 cd03267 ABC_NatA_like Similar 96.8 0.0044 9.5E-08 63.7 8.7 32 240-271 38-71 (236)
484 PRK14532 adenylate kinase; Pro 96.8 0.001 2.2E-08 65.6 3.8 36 249-286 2-37 (188)
485 PRK13648 cbiO cobalt transport 96.8 0.004 8.7E-08 65.2 8.5 29 243-271 29-59 (269)
486 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0041 8.8E-08 67.0 8.7 116 244-360 93-244 (316)
487 PRK11247 ssuB aliphatic sulfon 96.8 0.0022 4.9E-08 66.9 6.5 29 243-271 32-62 (257)
488 PRK13833 conjugal transfer pro 96.8 0.0021 4.6E-08 69.2 6.4 69 247-315 144-224 (323)
489 PRK12724 flagellar biosynthesi 96.8 0.02 4.2E-07 63.6 14.0 36 247-282 223-262 (432)
490 COG1119 ModF ABC-type molybden 96.8 0.0081 1.8E-07 61.5 10.2 64 294-369 177-240 (257)
491 PRK00771 signal recognition pa 96.8 0.0088 1.9E-07 67.1 11.5 38 245-282 93-133 (437)
492 cd03253 ABCC_ATM1_transporter 96.8 0.0055 1.2E-07 62.6 9.3 29 243-271 21-51 (236)
493 COG4608 AppF ABC-type oligopep 96.8 0.0023 5E-08 66.4 6.4 71 249-319 41-140 (268)
494 cd00544 CobU Adenosylcobinamid 96.8 0.0071 1.5E-07 59.2 9.5 94 250-345 2-113 (169)
495 PRK11889 flhF flagellar biosyn 96.8 0.011 2.4E-07 65.0 11.7 71 247-317 241-331 (436)
496 PRK11650 ugpC glycerol-3-phosp 96.8 0.0025 5.4E-08 69.8 6.9 22 250-271 33-54 (356)
497 TIGR01288 nodI ATP-binding ABC 96.8 0.0043 9.3E-08 66.3 8.6 30 242-271 23-54 (303)
498 PRK11264 putative amino-acid A 96.8 0.0054 1.2E-07 63.3 9.0 29 243-271 23-53 (250)
499 PRK13546 teichoic acids export 96.8 0.0024 5.2E-08 66.9 6.5 32 240-271 41-74 (264)
500 cd02021 GntK Gluconate kinase 96.8 0.0012 2.5E-08 62.7 3.7 33 250-284 2-34 (150)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-108 Score=915.30 Aligned_cols=567 Identities=54% Similarity=0.846 Sum_probs=507.5
Q ss_pred CcceeHHHHHHHHhcCCccEEEEeeCceEEEEEeecccccceeEEEEEcC--CCcHHHHHHHHhCCceeeeccCCccchh
Q 005815 81 SNRMTYSRFLQYLDEGSVKKVDLFENGNVAIAEIFNQALDKIQRVKVQLP--GLPQELLRKMKEKNVDFAARPMEMNWGV 158 (676)
Q Consensus 81 ~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (676)
+..++|++|..++..+.|+++.+...+.........+ ...++..| ..+..+...+..+++.+........ .
T Consensus 22 ~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 94 (596)
T COG0465 22 SKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDG-----SKNTVYLPKGVNDPNLVSFLDSNNITESGFIPEDN--S 94 (596)
T ss_pred cccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCC-----cceEEeecCCcccHHHHHHHHhcCCcccccCCCcc--c
Confidence 3569999999999999999999876552222222221 22333444 3467899999999886555543322 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccccCCCCCcccccccchhhHHHHHHHHHHhcChhH
Q 005815 159 SLLDFLANFGFPLLLLGSLFLRSSSVNSPGGPNLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEK 238 (676)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~ 238 (676)
.++..+..+++.+++++.++|++++....+++...|++++|+++...+....++|+|++|++++|+++.++|++|++|.+
T Consensus 95 ~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~k 174 (596)
T COG0465 95 LLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKK 174 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHHHHhCchh
Confidence 34554555544444444454554443322222237899999999998888999999999999999999999999999999
Q ss_pred HhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccc
Q 005815 239 FAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV 318 (676)
Q Consensus 239 ~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 318 (676)
|..+|.++|+|+||+||||||||+||||+|+++++||+++|+|+|+++|+|.+++++|++|.+|++++||||||||||++
T Consensus 175 y~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 175 YQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred hHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 005815 319 GRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
+++|+.+.++++++++|++||||.+||+|..+.+|+||++||+|+.+||||+||||||++|.++.||..+|++|++.|++
T Consensus 255 Gr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 255 GRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred ccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCCcc-ccccchhhhHHHHH
Q 005815 399 NKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTKM-TDGKNKILVAYHEI 477 (676)
Q Consensus 399 ~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~~~-~~~~~~~~~A~hEa 477 (676)
++++.+++|+..+|+.|+||+|+|++|++|+|++.|+|+++..|++.||++|+++++.|+++++. .++++++.+||||+
T Consensus 335 ~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEa 414 (596)
T COG0465 335 NKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEA 414 (596)
T ss_pred cCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999875 68899999999999
Q ss_pred HHHHHHHhCCCCCCCceeeeccCCCccceeeccCCCCccccCHHHHHHHHHhchhhhhhhhhhcCCCCcccCchhHHHHH
Q 005815 478 GHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLPEEDPALISKQQLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQI 557 (676)
Q Consensus 478 ghal~a~~l~~~~~v~~vti~~r~~~~G~~~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~~~g~~~~~~Ga~~DL~~A 557 (676)
|||+++++++++++++|+||+|||+++|||++.|.+|++++||.+++++|+++||||||||++||. ++||||++||++|
T Consensus 415 ghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~a 493 (596)
T COG0465 415 GHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKA 493 (596)
T ss_pred HHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcc-cccccchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 7999999999999
Q ss_pred HHHHHHHHHHhCCCC-CCCccccCCCcchhhHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005815 558 TQIARQMVTRYGMSE-IGPWTLIDPSVQSSDVVMRMLARNSMSEKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKLV 636 (676)
Q Consensus 558 T~lA~~mv~~~Gms~-~G~~~~~~~~~~~~d~l~~~~~~~~~se~~~~~id~ev~~ll~~ay~~A~~iL~~~r~~l~~la 636 (676)
|++|+.||++||||+ +||+.|..... . |+++....+.+|++++..||.||++++++||++|+++|.+|++.++.++
T Consensus 494 t~~ar~mVt~~Gms~~lG~v~~~~~~~-~--flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~ 570 (596)
T COG0465 494 TDLARAMVTEYGMSAKLGPVAYEQVEG-V--FLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLA 570 (596)
T ss_pred HHHHHHhhhhcCcchhhCceehhhccc-c--cccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999997 99999987533 2 6755446678999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCHHHHHHHHcccC
Q 005815 637 DVLMEKETLSGDEFRAVLSEFT 658 (676)
Q Consensus 637 ~~Lle~etL~g~ei~~il~~~~ 658 (676)
++|+|+|||+++++.+|+....
T Consensus 571 ~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 571 EMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHhhccCHHHHHHHHhccc
Confidence 9999999999999999997653
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-106 Score=859.99 Aligned_cols=438 Identities=54% Similarity=0.845 Sum_probs=420.2
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+...+++|+||.|+|++|++|+|+|+||++|.+|.++|.+.|+||||+||||||||+||||+|+|+++||++.++++|-+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+|+|++++++|++|..|+.++||||||||||+++.+|... ...+..+++||||.+||||..+.+||||++||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 9999999999999999999999999999999999998652 2237899999999999999999999999999999999
Q ss_pred cccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 005815 366 DSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLK 445 (676)
Q Consensus 366 d~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~ 445 (676)
|+||.||||||++|.+|.||...|.+||+.|+.+..++.++|+..||+-|+||+|+||+|++|.|+..|+..+...|++.
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~ 532 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMK 532 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcCCCcc-ccccchhhhHHHHHHHHHHHHhCCCCCCCceeeeccCCCccceeeccCCCCccccCHHHHH
Q 005815 446 EIDDSIDRIVAGMEGTKM-TDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLPEEDPALISKQQLF 524 (676)
Q Consensus 446 di~~Ai~~v~~g~~~~~~-~~~~~~~~~A~hEaghal~a~~l~~~~~v~~vti~~r~~~~G~~~~~~~~~~~~~t~~~l~ 524 (676)
|++.|-+|+++|.+++.+ .+++.+.++||||.||||++.++.++.|++|+||.|||.++|++.++|+.|.+.+||.+++
T Consensus 533 ~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~L 612 (752)
T KOG0734|consen 533 HLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLL 612 (752)
T ss_pred HHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHHHH
Confidence 999999999999999865 4788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhhhhhhhhhcCCCCcccCchhHHHHHHHHHHHHHHHhCCCC-CCCccccCCCcchhhHHHHHhhcccccHHHH
Q 005815 525 ARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQITQIARQMVTRYGMSE-IGPWTLIDPSVQSSDVVMRMLARNSMSEKLA 603 (676)
Q Consensus 525 ~~i~~~LaGraAE~~~~g~~~~~~Ga~~DL~~AT~lA~~mv~~~Gms~-~G~~~~~~~~~~~~d~l~~~~~~~~~se~~~ 603 (676)
+++.+|||||+|||++||.+.+|+||++||++||++|++||+.||||+ +||+.+..... ..+++.++.
T Consensus 613 A~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~-----------~~s~~~~t~ 681 (752)
T KOG0734|consen 613 ARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDN-----------SSSLSPRTQ 681 (752)
T ss_pred HHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCC-----------CCCCCchhH
Confidence 999999999999999999999999999999999999999999999998 99998875432 246788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHccc
Q 005815 604 DDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEF 657 (676)
Q Consensus 604 ~~id~ev~~ll~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~ 657 (676)
..||.||+++|+++|+||+.||+.|...+++||++|++.|||+++||+++++..
T Consensus 682 ~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 682 ELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999765
No 3
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=5.3e-101 Score=878.86 Aligned_cols=587 Identities=62% Similarity=1.000 Sum_probs=521.8
Q ss_pred CCCCCCCcceeHHHHHHHHhcCCccEEEEeeCceEEEEEeeccc-ccceeEEEEEcCCCcHHHHHHHHhCCceeeeccCC
Q 005815 75 SPIEYTSNRMTYSRFLQYLDEGSVKKVDLFENGNVAIAEIFNQA-LDKIQRVKVQLPGLPQELLRKMKEKNVDFAARPME 153 (676)
Q Consensus 75 ~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (676)
..+|.++++++|++|++++++|+|++|.+.+++....+....+. ..+.+.+++.+|..++++++.|.++++++..++..
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 122 (638)
T CHL00176 43 VVQNKASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPV 122 (638)
T ss_pred cccCCCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCC
Confidence 35778888999999999999999999999876543333222211 12234566677766789999999999999887654
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhcccCC-CCCC-CCCCccccccccccccCCCCCcccccccchhhHHHHHHHHH
Q 005815 154 MNWGVSLLDFLANFGFPLLLLGSLFLRSSSVNS-PGGP-NLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQ 231 (676)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~ 231 (676)
.. ..|+..+.++++|++++++++|++.+... .+++ ...+++++++.++.......++|+||+|++++|+++.+++.
T Consensus 123 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~ 200 (638)
T CHL00176 123 LK--SNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVS 200 (638)
T ss_pred cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHH
Confidence 32 34666677777788888777666554321 2222 23568899998888888889999999999999999999999
Q ss_pred HhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEE
Q 005815 232 FLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVF 311 (676)
Q Consensus 232 ~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILf 311 (676)
++++++.|..+|...|+|+||+||||||||++|+++|+++++||+++++++|.+.+.|.+.++++.+|..|+..+|||||
T Consensus 201 ~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILf 280 (638)
T CHL00176 201 FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVF 280 (638)
T ss_pred HHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHH
Q 005815 312 IDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQ 391 (676)
Q Consensus 312 IDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~ 391 (676)
|||||.++.+|+.+.++.+++.++++++||.+||++..+.+++||++||+++.+|++++||||||++|.+++|+.++|.+
T Consensus 281 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~ 360 (638)
T CHL00176 281 IDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLD 360 (638)
T ss_pred EecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHH
Confidence 99999999888777677788899999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCCccccccchhh
Q 005815 392 ILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTKMTDGKNKIL 471 (676)
Q Consensus 392 IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~ 471 (676)
||+.|+++..+.+++++..+++.|+||+++||+++|++|+..|.+++...|+.+||++|+++++.|.++..+.+.+++++
T Consensus 361 IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~ 440 (638)
T CHL00176 361 ILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRL 440 (638)
T ss_pred HHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHHHHHH
Confidence 99999999888888999999999999999999999999999999999999999999999999999998877777888999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCceeeeccCCCccceeeccCCCCccccCHHHHHHHHHhchhhhhhhhhhcCCCCcccCch
Q 005815 472 VAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLPEEDPALISKQQLFARIVGGLGGRAAEEVIFGEAEITTGAA 551 (676)
Q Consensus 472 ~A~hEaghal~a~~l~~~~~v~~vti~~r~~~~G~~~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~~~g~~~~~~Ga~ 551 (676)
+||||+||||++++++++++|++|||+|||+++||+++.|.++..++||.+|+++|+++|||||||+++||+.++|+||+
T Consensus 441 vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~ 520 (638)
T CHL00176 441 IAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGAS 520 (638)
T ss_pred HHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCccccCCCcchhhHHHH-HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005815 552 GDLQQITQIARQMVTRYGMSEIGPWTLIDPSVQSSDVVMR-MLARNSMSEKLADDIDKTVRNIIESAYEVAKNHIRNNRE 630 (676)
Q Consensus 552 ~DL~~AT~lA~~mv~~~Gms~~G~~~~~~~~~~~~d~l~~-~~~~~~~se~~~~~id~ev~~ll~~ay~~A~~iL~~~r~ 630 (676)
+||++||+||++||++||||++||+++...... ..|+++ +...+.+|++++..||.||+++|++||++|+++|++||+
T Consensus 521 ~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~ 599 (638)
T CHL00176 521 NDLQQVTNLARQMVTRFGMSSIGPISLESNNST-DPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRV 599 (638)
T ss_pred hHHHHHHHHHHHHHHHhCCCcCCceeecCCCCc-ccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999988654331 124543 334567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHcccCCCCCcc
Q 005815 631 AIDKLVDVLMEKETLSGDEFRAVLSEFTDVSADQ 664 (676)
Q Consensus 631 ~l~~la~~Lle~etL~g~ei~~il~~~~~~~~~~ 664 (676)
.|++||++|+|+|||+++||++|++.+...|+++
T Consensus 600 ~l~~la~~Lle~Etl~~~ei~~il~~~~~~~~~~ 633 (638)
T CHL00176 600 LIDLLVELLLQKETIDGDEFREIVNSYTILPPKK 633 (638)
T ss_pred HHHHHHHHHHHhCccCHHHHHHHHhhcCCCCCCc
Confidence 9999999999999999999999999887666544
No 4
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-100 Score=861.36 Aligned_cols=571 Identities=54% Similarity=0.839 Sum_probs=487.0
Q ss_pred CcceeHHHHH-HHHhcCCccEEEEeeCceEEEEEeeccccc---ceeEEEEEcCCCcHHHHHHHHhC----Cceeeec-c
Q 005815 81 SNRMTYSRFL-QYLDEGSVKKVDLFENGNVAIAEIFNQALD---KIQRVKVQLPGLPQELLRKMKEK----NVDFAAR-P 151 (676)
Q Consensus 81 ~~~~~~~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~ 151 (676)
..+++|.+|+ ++++.|.|.++.+...-....+...+.... -.+.+...+-. ...+.+++... +++.... +
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~-v~~F~~kl~~a~~~l~~~~~~~~p 241 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRS-VDNFERKLDEAQRNLGIDTVVRVP 241 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecc-cchHHHHHHHHHHHhCCCceeEee
Confidence 4579999997 689999999998865222222222222211 11233333322 23444444432 3321111 1
Q ss_pred CCccchhhhHHHHHHHHHH-HHHHHHHHHHhcccCC-----CCCCCCCCccccccc--cccccCCCCCcccccccchhhH
Q 005815 152 MEMNWGVSLLDFLANFGFP-LLLLGSLFLRSSSVNS-----PGGPNLPFGLGRSKA--KFEMEPNTGVTFDDVAGVDEAK 223 (676)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~--~~~~~~~~~~~f~dv~G~~~~k 223 (676)
... .....+.......+| ++.++.++++.++..+ +++...++.|+.++. ++..+.+++++|+||+|++++|
T Consensus 242 V~~-~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731|consen 242 VTY-ISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred eEE-eecchhhhhhhhhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHH
Confidence 110 112233334444566 7778888877766542 233333344554444 6777888899999999999999
Q ss_pred HHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHh
Q 005815 224 QDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAK 303 (676)
Q Consensus 224 ~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~ 303 (676)
++|+|+|.||++|+.|+++|+++|+|+||+||||||||+||||+|+|+++||+.+++++|+++++|.+++++|++|..|+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEcCCccccccC-CCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecC
Q 005815 304 ANSPCLVFIDEIDAVGRQR-GTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 304 ~~~P~ILfIDEID~l~~~r-~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~ 382 (676)
.++||||||||||+++.+| +.+..++++++++++||||.+||+|..+++|+|+++||+++.||+||+||||||++|.++
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 9999999999999999999 445667899999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCC
Q 005815 383 LPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGT 461 (676)
Q Consensus 383 ~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~ 461 (676)
+||..+|.+|++.|+++.+++ +++++..+|..|+||+|+||.|+||+|++.|+|++...|+..||.+|++|++.|++++
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred CCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcccccc
Confidence 999999999999999999985 8888999999999999999999999999999999999999999999999999998876
Q ss_pred c-cccccchhhhHHHHHHHHHHHHhCCCCCCCceeeeccCCCccceeeccCCCCccccCHHHHHHHHHhchhhhhhhhhh
Q 005815 462 K-MTDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLPEEDPALISKQQLFARIVGGLGGRAAEEVI 540 (676)
Q Consensus 462 ~-~~~~~~~~~~A~hEaghal~a~~l~~~~~v~~vti~~r~~~~G~~~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~~ 540 (676)
+ ..+.++++.+||||||||+++|++++.+|+.+|+|+| |+++||++|.|.++ +++|+++|+++||++|||||||+++
T Consensus 561 ~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~ql~~rm~m~LGGRaAEev~ 638 (774)
T KOG0731|consen 561 SRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQLFDRMVMALGGRAAEEVV 638 (774)
T ss_pred chhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHHHHHHHHHHhCcchhhhee
Confidence 4 4578889999999999999999999999999999999 66999999999876 8999999999999999999999999
Q ss_pred cCCCCcccCchhHHHHHHHHHHHHHHHhCCCC-CCCccccCCCcchhhHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Q 005815 541 FGEAEITTGAAGDLQQITQIARQMVTRYGMSE-IGPWTLIDPSVQSSDVVMRMLARNSMSEKLADDIDKTVRNIIESAYE 619 (676)
Q Consensus 541 ~g~~~~~~Ga~~DL~~AT~lA~~mv~~~Gms~-~G~~~~~~~~~~~~d~l~~~~~~~~~se~~~~~id~ev~~ll~~ay~ 619 (676)
|| .++||||++||++||++|+.||++|||++ +|++++..... +.+...++||+.+++.||.||+++++.||+
T Consensus 639 fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~------~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~ 711 (774)
T KOG0731|consen 639 FG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLP------GDESFRKPYSEKTAQLIDTEVRRLVQKAYE 711 (774)
T ss_pred cC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCccc------ccccccCccchhHHHHHHHHHHHHHhhHHH
Confidence 99 67999999999999999999999999997 99999843211 233446899999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcccCCCCC
Q 005815 620 VAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTDVSA 662 (676)
Q Consensus 620 ~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~~~~ 662 (676)
+|.++|++|++.++.||+.|++||+|+++|+.++++.++..+.
T Consensus 712 ~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~ 754 (774)
T KOG0731|consen 712 RTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP 754 (774)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccc
Confidence 9999999999999999999999999999999999999887764
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.3e-90 Score=797.44 Aligned_cols=565 Identities=48% Similarity=0.783 Sum_probs=492.6
Q ss_pred cceeHHHHHHHHhcCCccEEEEeeCceEEEEEeecccccceeEEEEEcCCCcHHHHHHHHhCCceeeeccCCccchhhhH
Q 005815 82 NRMTYSRFLQYLDEGSVKKVDLFENGNVAIAEIFNQALDKIQRVKVQLPGLPQELLRKMKEKNVDFAARPMEMNWGVSLL 161 (676)
Q Consensus 82 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (676)
..++|+.|.+...+|.+.++.+..+ .+.. ...+ .+++....|..++.++..+.++++.+....... ..+.
T Consensus 30 ~~~~~~~~~~~~~~~~v~Ev~~~~~-tIK~---~~~e---~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~---~~~~ 99 (644)
T PRK10733 30 RKVDYSTFLQEVNQDQVREARINGR-EINV---TKKD---SNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEE---PSLL 99 (644)
T ss_pred ccCCHHHHHHHHHcCCeEEEEEeCC-EEEE---EEcC---CceEEEeCCCCCHHHHHHHHHcCCeEEecCccc---chHH
Confidence 4589999999999999999977432 2221 1111 123444456556788999999999887654332 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhh
Q 005815 162 DFLANFGFPLLLLGSLFLRSSSVNSPGGPNLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAA 241 (676)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~ 241 (676)
..+..+.+|++++.++++++.+..+.|+....+.|++++..+........+|+|+.|.+.+++++.+++.++..+..|..
T Consensus 100 ~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~ 179 (644)
T PRK10733 100 ASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQK 179 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHh
Confidence 33333444555544444444433333433345678888887777666778999999999999999999999999999999
Q ss_pred hCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCcccccc
Q 005815 242 VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQ 321 (676)
Q Consensus 242 ~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 321 (676)
++...|+|+||+||||||||++++++|+++++||+.++++++.+.+.+.+...++.+|..|+..+||||||||+|.++.+
T Consensus 180 ~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~ 259 (644)
T PRK10733 180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259 (644)
T ss_pred cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC
Q 005815 322 RGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK 401 (676)
Q Consensus 322 r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~ 401 (676)
|+.+.++++.+..+++++||.+||++..+.+++||+|||+|+.||++++||||||++|.+++||.++|.+||+.|+++.+
T Consensus 260 r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~ 339 (644)
T PRK10733 260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP 339 (644)
T ss_pred cCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC
Confidence 88777777888899999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCCc-cccccchhhhHHHHHHHH
Q 005815 402 LDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTK-MTDGKNKILVAYHEIGHA 480 (676)
Q Consensus 402 l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~~-~~~~~~~~~~A~hEagha 480 (676)
+..++++..+++.|.||||+||.++|++|+..|.++++..|+.+|+++|++++..|.+... ...+++++.+||||+|||
T Consensus 340 l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha 419 (644)
T PRK10733 340 LAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHA 419 (644)
T ss_pred CCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999887654 345678899999999999
Q ss_pred HHHHhCCCCCCCceeeeccCCCccceeeccCCCCccccCHHHHHHHHHhchhhhhhhhhhcCCCCcccCchhHHHHHHHH
Q 005815 481 VCATLTPGHDPVQKVTLIPRGQARGLTWFLPEEDPALISKQQLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQITQI 560 (676)
Q Consensus 481 l~a~~l~~~~~v~~vti~~r~~~~G~~~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~~~g~~~~~~Ga~~DL~~AT~l 560 (676)
++++++++++++++|||+|||+++||+++.|.++....||.+|+++|+++|||||||+++||.+++|+||+|||++||+|
T Consensus 420 ~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~l 499 (644)
T PRK10733 420 IIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNL 499 (644)
T ss_pred HHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999998888889999999999999999999999999888999999999999999
Q ss_pred HHHHHHHhCCCC-CCCccccCCCcchhhHHHH-HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005815 561 ARQMVTRYGMSE-IGPWTLIDPSVQSSDVVMR-MLARNSMSEKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDV 638 (676)
Q Consensus 561 A~~mv~~~Gms~-~G~~~~~~~~~~~~d~l~~-~~~~~~~se~~~~~id~ev~~ll~~ay~~A~~iL~~~r~~l~~la~~ 638 (676)
|++||++||||+ +|++.|...... .|+++ +...+.+|+++++.||.||++++++||++|+++|++||+.|++||++
T Consensus 500 A~~mv~~~Gms~~lg~~~~~~~~~~--~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~ 577 (644)
T PRK10733 500 ARNMVTQWGFSEKLGPLLYAEEEGE--VFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDA 577 (644)
T ss_pred HHHHHHHhCCCccccchhhcccccc--cccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999998 999988654322 25543 23457899999999999999999999999999999999999999999
Q ss_pred HHHhcccCHHHHHHHHcccC
Q 005815 639 LMEKETLSGDEFRAVLSEFT 658 (676)
Q Consensus 639 Lle~etL~g~ei~~il~~~~ 658 (676)
|+|+|||+++||++|++.+.
T Consensus 578 Lle~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 578 LMKYETIDAPQIDDLMARRD 597 (644)
T ss_pred HHHhceeCHHHHHHHHhcCC
Confidence 99999999999999998763
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.1e-83 Score=726.24 Aligned_cols=490 Identities=60% Similarity=0.941 Sum_probs=442.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCccccccccccccCCCCCcccccccchhhHHHHHHHHHHhcChhH
Q 005815 160 LLDFLANFGFPLLLLGSLFL-RSSSVNSPGGPNLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEK 238 (676)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~ 238 (676)
+++++..+.+|+++++..|+ ++++..+.| ++.+.+++++.++..++.+.++|+||+|++++|+++.+++.++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~ 79 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGGG--GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSK 79 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHH
Confidence 34555555665666555554 555554432 456778899999999889999999999999999999999999999999
Q ss_pred HhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccc
Q 005815 239 FAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAV 318 (676)
Q Consensus 239 ~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 318 (676)
|...|...|+|+||+||||||||++|+++|+++++||+.+++++|.+.+.|.+.+.++.+|+.|+..+||||||||||.+
T Consensus 80 ~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l 159 (495)
T TIGR01241 80 FTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAV 159 (495)
T ss_pred HHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 005815 319 GRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
+.+++.+.++.+++..+++++||.+||++..+.+++||+|||+++.|||+++||||||+.|++++|+.++|.+|++.+++
T Consensus 160 ~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 160 GRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred hhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh
Confidence 98887665566778889999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCCcc-ccccchhhhHHHHH
Q 005815 399 NKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTKM-TDGKNKILVAYHEI 477 (676)
Q Consensus 399 ~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~~~-~~~~~~~~~A~hEa 477 (676)
+..+..+.++..++..+.||+++||+++|++|+..|.++++..|+.+||+.|++++..|...... .++.+++++||||+
T Consensus 240 ~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEa 319 (495)
T TIGR01241 240 NKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEA 319 (495)
T ss_pred cCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 88887888999999999999999999999999999999999999999999999999988765543 46677899999999
Q ss_pred HHHHHHHhCCCCCCCceeeeccCCCccceeeccCCCCccccCHHHHHHHHHhchhhhhhhhhhcCCCCcccCchhHHHHH
Q 005815 478 GHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLPEEDPALISKQQLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQI 557 (676)
Q Consensus 478 ghal~a~~l~~~~~v~~vti~~r~~~~G~~~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~~~g~~~~~~Ga~~DL~~A 557 (676)
||||+++++++..++.++||.|||.++||+++.|.++....|+.+|+++|+++|||||||+++||+ +|+|+++||++|
T Consensus 320 GhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~--~s~Ga~~Dl~~A 397 (495)
T TIGR01241 320 GHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGE--VTTGASNDIKQA 397 (495)
T ss_pred hHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcC--CCCCchHHHHHH
Confidence 999999999988899999999999999999999988788999999999999999999999999994 899999999999
Q ss_pred HHHHHHHHHHhCCCC-CCCccccCCCcchhhHHHH-HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005815 558 TQIARQMVTRYGMSE-IGPWTLIDPSVQSSDVVMR-MLARNSMSEKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKL 635 (676)
Q Consensus 558 T~lA~~mv~~~Gms~-~G~~~~~~~~~~~~d~l~~-~~~~~~~se~~~~~id~ev~~ll~~ay~~A~~iL~~~r~~l~~l 635 (676)
|++|+.||.+|||++ +|++++..... ..++++ +...+++|+.++..+|.+|+++|++||++|+++|++||+++++|
T Consensus 398 t~lA~~mv~~~Gm~~~~g~~~~~~~~~--~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~l 475 (495)
T TIGR01241 398 TNIARAMVTEWGMSDKLGPVAYGSDGG--DVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELL 475 (495)
T ss_pred HHHHHHHHHHhCCCcccCceeeccCcc--ccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999998 99988864221 113321 22346899999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCHHHHHHHHc
Q 005815 636 VDVLMEKETLSGDEFRAVLS 655 (676)
Q Consensus 636 a~~Lle~etL~g~ei~~il~ 655 (676)
|++|+++|+|+++||++|++
T Consensus 476 a~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 476 AKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHcCeeCHHHHHHHhC
Confidence 99999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-61 Score=500.49 Aligned_cols=261 Identities=44% Similarity=0.768 Sum_probs=253.2
Q ss_pred ccccccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005815 199 SKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 277 (676)
Q Consensus 199 s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~ 277 (676)
+...+.+++.++++|+||+|++++++++++.++. |++|+.|..+|.++|+|||||||||||||+||||+|++.++.|+.
T Consensus 136 ~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIr 215 (406)
T COG1222 136 RVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIR 215 (406)
T ss_pred hhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEE
Confidence 3345667888999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred EechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEE
Q 005815 278 LSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIA 357 (676)
Q Consensus 278 is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIa 357 (676)
+.+|+|+.+|+|++++-+|++|+.|+.++||||||||||+++.+|.+...+++.+.++++.+||.+||||.+.++|-||+
T Consensus 216 vvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ 295 (406)
T COG1222 216 VVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIM 295 (406)
T ss_pred eccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 005815 358 ATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRR 437 (676)
Q Consensus 358 aTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 437 (676)
|||+++.|||||+|||||||.|+||+||.++|.+||+.|.+++.+.+++|++.||+.|+|+|||||.++|.+|.++|.|.
T Consensus 296 ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~ 375 (406)
T COG1222 296 ATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE 375 (406)
T ss_pred ecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCcC
Q 005815 438 GKANITLKEIDDSIDRIVAGME 459 (676)
Q Consensus 438 ~~~~It~~di~~Ai~~v~~g~~ 459 (676)
.+..||++||.+|++++.....
T Consensus 376 ~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 376 RRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred ccCeecHHHHHHHHHHHHhccc
Confidence 9999999999999999987543
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=2.2e-55 Score=524.40 Aligned_cols=308 Identities=20% Similarity=0.318 Sum_probs=264.7
Q ss_pred HHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHH------------------------------
Q 005815 238 KFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMF------------------------------ 287 (676)
Q Consensus 238 ~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~------------------------------ 287 (676)
.+.++|..+|+||||+||||||||+||||+|+++++||+.+++++|.+.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 34678999999999999999999999999999999999999999998643
Q ss_pred -------------hhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC---CCC
Q 005815 288 -------------VGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT---GNS 351 (676)
Q Consensus 288 -------------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~---~~~ 351 (676)
.+.+..+++.+|+.|+..+||||||||||+++.+. ....++++|+.+||+.. ...
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccCCCC
Confidence 12234458999999999999999999999997541 22346899999999874 456
Q ss_pred CeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHh--cCCCCCc-cccHHHHHHhCCCCcHHHHHHHHH
Q 005815 352 GVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHS--NNKKLDK-DVSLSVIATRTPGFSGADLANLMN 428 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l--~~~~l~~-d~dl~~La~~t~G~sgadL~~lv~ 428 (676)
+|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..++ ++..+.. .+++..+|+.|+|||||||+++||
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988653 4444443 357999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCCccccccchhhhHHHHHHHHHHHHhCCCCCCCceeeeccC------CC
Q 005815 429 EAAILAGRRGKANITLKEIDDSIDRIVAGMEGTKMTDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPR------GQ 502 (676)
Q Consensus 429 ~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~~A~hEaghal~a~~l~~~~~v~~vti~~r------~~ 502 (676)
+|+..|.++++..|+.++|+.|++|+++|.+... ....++ .+|+||+||||++.++.+.+||++|||+++ +.
T Consensus 1852 EAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~-~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~ 1929 (2281)
T CHL00206 1852 EALSISITQKKSIIDTNTIRSALHRQTWDLRSQV-RSVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGD 1929 (2281)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcc-cCcchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcc
Confidence 9999999999999999999999999999986543 233333 369999999999999999999999999642 45
Q ss_pred ccceeeccCCCCccccCHHHHHHHHHhchhhhhhhhhhcCCCCcccCchhHHHHHHHHHHHHHHHhCCCC
Q 005815 503 ARGLTWFLPEEDPALISKQQLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQITQIARQMVTRYGMSE 572 (676)
Q Consensus 503 ~~G~~~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~~~g~~~~~~Ga~~DL~~AT~lA~~mv~~~Gms~ 572 (676)
++||+|+.|.+ +.++|.+++.+|++||||||||++||+... .|+.||+.|||++
T Consensus 1930 ~yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vE 1983 (2281)
T CHL00206 1930 SYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVE 1983 (2281)
T ss_pred cceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchh
Confidence 67999999865 799999999999999999999999998532 4677777777764
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-49 Score=431.90 Aligned_cols=247 Identities=44% Similarity=0.770 Sum_probs=235.1
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
.+-++++|+||+|++++|.+|++.|.| +++|+.|.++|..+|+|||||||||||||++|||+|++++++|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 456789999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
++|+|++++.++++|.+|+..+|||||+||||+++..|+.. . .....+++++||++|||+....+|+|||+||+|+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~-~--~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS-S--SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC-c--cchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 99999999999999999999999999999999999999732 2 25678899999999999999999999999999999
Q ss_pred ccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC--CCCC
Q 005815 365 LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG--KANI 442 (676)
Q Consensus 365 Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~--~~~I 442 (676)
||+||+||||||+.|+|++||.+.|.+||+.++++.++.+++|+..||..|+|||||||.++|++|+..|.++. ...|
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999885 4579
Q ss_pred CHHHHHHHHHHHH
Q 005815 443 TLKEIDDSIDRIV 455 (676)
Q Consensus 443 t~~di~~Ai~~v~ 455 (676)
+.+||++|+..+.
T Consensus 663 ~~~hf~~al~~~r 675 (693)
T KOG0730|consen 663 TWQHFEEALKAVR 675 (693)
T ss_pred cHHHHHHHHHhhc
Confidence 9999999998764
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-48 Score=380.91 Aligned_cols=322 Identities=33% Similarity=0.537 Sum_probs=281.4
Q ss_pred CCCcHHHHHHHHhCCceeeeccCCccchhhhHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccccCCC
Q 005815 130 PGLPQELLRKMKEKNVDFAARPMEMNWGVSLLDFLANFGFPLLLLGSLFLRSSSVNSPGGPNLPFGLGRSKAKFEMEPNT 209 (676)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 209 (676)
|-...+|++....+.-.+..+.. . +|++.+++.+.--++....-+.+++.++-.-+ ..|-....|-..+....++
T Consensus 76 plvigqfle~vdqnt~ivgsttg-s---ny~vrilstidrellkps~svalhrhsnalvd-vlppeadssi~ml~~~ekp 150 (408)
T KOG0727|consen 76 PLVIGQFLEAVDQNTAIVGSTTG-S---NYYVRILSTIDRELLKPSASVALHRHSNALVD-VLPPEADSSISMLGPDEKP 150 (408)
T ss_pred chHHHHHHHhhhccCceeecccC-C---ceEEeehhhhhHHHcCCccchhhhhcccceee-ccCCcccccccccCCCCCC
Confidence 43345677776655444443332 2 56777777777777777777777765542111 1121222233334455678
Q ss_pred CCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHh
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFV 288 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~ 288 (676)
++++.||.|++-+|+++++.++. |.+.+.|++.|.++|+|||||||||||||+|++|+|+.....|+.+.+|+|+.+|.
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 99999999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccccc
Q 005815 289 GVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSA 368 (676)
Q Consensus 289 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~a 368 (676)
|++..-+|++|..|+.++|+||||||||++..+|-+...+.+.+.++++-+||++||||....+|-||.+||+.+.|||+
T Consensus 231 gegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpa 310 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPA 310 (408)
T ss_pred ccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHh
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred ccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 005815 369 LHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEID 448 (676)
Q Consensus 369 LlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~ 448 (676)
|+||||+|++|+||+||..+++-++.....++.+.+++|++.+..+....|++||..+|++|.+.|.|.++-.|...||+
T Consensus 311 llrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e 390 (408)
T KOG0727|consen 311 LLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFE 390 (408)
T ss_pred hcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 005815 449 DSIDRIVA 456 (676)
Q Consensus 449 ~Ai~~v~~ 456 (676)
++...++.
T Consensus 391 ~ay~~~vk 398 (408)
T KOG0727|consen 391 KAYKTVVK 398 (408)
T ss_pred HHHHhhcC
Confidence 99987754
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-48 Score=390.20 Aligned_cols=296 Identities=36% Similarity=0.611 Sum_probs=271.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccCCCCC----CCCCCccccccccccccCCCCCcccccccchhhHHHHHHHHHH-
Q 005815 158 VSLLDFLANFGFPLLLLGSLFLRSSSVNSPGG----PNLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF- 232 (676)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~- 232 (676)
.+++++++.+...++-.++.+.+..+....-| ...++ ...+.+++.+.-+|+|+.|++.+++++++.++.
T Consensus 130 e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpm-----v~vmK~eKaP~Ety~diGGle~QiQEiKEsvELP 204 (440)
T KOG0726|consen 130 EYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPM-----VSVMKVEKAPQETYADIGGLESQIQEIKESVELP 204 (440)
T ss_pred hheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCcc-----ceeeecccCchhhhcccccHHHHHHHHHHhhcCC
Confidence 56777887788888888888887765442211 12222 223446778889999999999999999999998
Q ss_pred hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEE
Q 005815 233 LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFI 312 (676)
Q Consensus 233 l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfI 312 (676)
|.+|+.|+.+|.++|+||+|||+||||||+||+|+|+.....|+.+-+++++.+|.|.+.+.+|++|..|..++|+|+||
T Consensus 205 LthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFi 284 (440)
T KOG0726|consen 205 LTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFI 284 (440)
T ss_pred CCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHH
Q 005815 313 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQI 392 (676)
Q Consensus 313 DEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~I 392 (676)
||||+++.+|.+..+++..+.++++.+||+++|||.+++.|-||.|||+.+.|||+|+||||+|+.|+|+.||...++.|
T Consensus 285 DEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkI 364 (440)
T KOG0726|consen 285 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKI 364 (440)
T ss_pred ehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhcee
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCc
Q 005815 393 LKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGM 458 (676)
Q Consensus 393 L~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~ 458 (676)
|..|..++.+..+++++.+...-..+||+||.++|.+|.++|.|..+..++++||..|.++++...
T Consensus 365 f~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 365 FQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred EEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999997644
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-47 Score=411.37 Aligned_cols=244 Identities=45% Similarity=0.752 Sum_probs=228.5
Q ss_pred CCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMF 287 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~ 287 (676)
++++|+||+|+++++.+|...+.+ +++|+.|+.+|...|.|||||||||||||+||||+|+|++.+|+++.+.++.++|
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 689999999999999999998877 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccc
Q 005815 288 VGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDS 367 (676)
Q Consensus 288 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~ 367 (676)
+|+++..+|.+|.+|+..+|||||+||+|+|.++|+.+. .....+++||||++|||...+.+|.||+|||+||.+||
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDp 662 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDP 662 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccch
Confidence 999999999999999999999999999999999998643 55578899999999999999999999999999999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhc--CCCCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHcCC----
Q 005815 368 ALHRPGRFDRQVSVGLPDIRGREQILKVHSN--NKKLDKDVSLSVIATRTP--GFSGADLANLMNEAAILAGRRGK---- 439 (676)
Q Consensus 368 aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~--~~~l~~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A~r~~~---- 439 (676)
|++||||||+.+++++|+..+|.+||+.+.+ +.+++.++|++.||+.+. |||||||..||++|...|.++.-
T Consensus 663 AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~ 742 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEID 742 (802)
T ss_pred hhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999 667889999999999887 99999999999999999987621
Q ss_pred ------------CCCCHHHHHHHHHHHH
Q 005815 440 ------------ANITLKEIDDSIDRIV 455 (676)
Q Consensus 440 ------------~~It~~di~~Ai~~v~ 455 (676)
..++..||++|+.++.
T Consensus 743 ~~~~~~~~~~~~~~~t~~hF~eA~~~i~ 770 (802)
T KOG0733|consen 743 SSEDDVTVRSSTIIVTYKHFEEAFQRIR 770 (802)
T ss_pred ccCcccceeeeeeeecHHHHHHHHHhcC
Confidence 1356779999988774
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-47 Score=375.87 Aligned_cols=256 Identities=38% Similarity=0.692 Sum_probs=247.4
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS 281 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s 281 (676)
+.+++-++-+++-|.|.+.++++++++++. .++|+.|..+|...|+|+|||||||||||+||+|+|+...+.|+.++++
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence 445677788999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
+++.+|.|++..-+|++|-.|+.++|+|||+||||+++..|..+.++++.+.+++..+||+++|||....++-||.+||+
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnr 295 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNR 295 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccc
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred cccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 005815 362 PEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKAN 441 (676)
Q Consensus 362 ~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~ 441 (676)
.+.|||+|+||||+|+.|+||+|+.+.|.+||+.|.++..+...+++..+|...+|.||+++..+|.+|.++|.|..+-.
T Consensus 296 idild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvh 375 (404)
T KOG0728|consen 296 IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVH 375 (404)
T ss_pred cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCc
Q 005815 442 ITLKEIDDSIDRIVAGM 458 (676)
Q Consensus 442 It~~di~~Ai~~v~~g~ 458 (676)
+|++||+-|+.+++...
T Consensus 376 vtqedfemav~kvm~k~ 392 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQKD 392 (404)
T ss_pred ccHHHHHHHHHHHHhcc
Confidence 99999999999997543
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-47 Score=375.67 Aligned_cols=267 Identities=39% Similarity=0.715 Sum_probs=256.5
Q ss_pred ccccccccccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC
Q 005815 195 GLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV 273 (676)
Q Consensus 195 ~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~ 273 (676)
....|...+.++..++++++||.|+.++++.++++++. +.+|++|..+|..+|+|||||||||||||++|||+|+..+.
T Consensus 158 kidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 158 KIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred CCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 45677778889999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred CEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCe
Q 005815 274 PFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGV 353 (676)
Q Consensus 274 p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~V 353 (676)
.|+.+-+|+++.+|+|+++.-+|++|+.|+....||||+||||++++.|-+...+++.+.++++.+|+.++|||..++++
T Consensus 238 cfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgni 317 (435)
T KOG0729|consen 238 CFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 317 (435)
T ss_pred eEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCe
Confidence 99999999999999999999999999999999999999999999999987766678889999999999999999999999
Q ss_pred EEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005815 354 IVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAIL 433 (676)
Q Consensus 354 iVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~ 433 (676)
-|+.+||+|+.|||+|+||||+|+.++|.+||.+.|..|++.|.+.+..+.++-++.||+.++.-+|++|+.+|.+|.+.
T Consensus 318 kvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmf 397 (435)
T KOG0729|consen 318 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMF 397 (435)
T ss_pred EEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHcCcCCC
Q 005815 434 AGRRGKANITLKEIDDSIDRIVAGMEGT 461 (676)
Q Consensus 434 A~r~~~~~It~~di~~Ai~~v~~g~~~~ 461 (676)
|.+..+...|..||.+|+++++.|..+-
T Consensus 398 airarrk~atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 398 AIRARRKVATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887653
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-46 Score=372.88 Aligned_cols=261 Identities=38% Similarity=0.658 Sum_probs=248.6
Q ss_pred cccccccccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC
Q 005815 196 LGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 274 (676)
Q Consensus 196 ~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p 274 (676)
+......+.+...+.-+++||.|++.++++|.+.+-. +.++++|.++|.++|+|+|+|||||||||++|||.|...+..
T Consensus 153 yDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 153 YDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred hhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 3333445667777888999999999999999887765 899999999999999999999999999999999999999999
Q ss_pred EEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeE
Q 005815 275 FFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVI 354 (676)
Q Consensus 275 ~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~Vi 354 (676)
|+.+.+..++.+|+|.+++.+|+.|..|+..+|+||||||+|+++.+|.++...++.+.++++.+||.++|||.++..|-
T Consensus 233 FLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vK 312 (424)
T KOG0652|consen 233 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVK 312 (424)
T ss_pred HHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceE
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 355 VIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 355 VIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
||++||+.+.|||+|+|.||+|+.|+||.|+.+.|.+|++.|.+++...+++++++||+.|.+|+|++...+|-+|.+.|
T Consensus 313 viAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiA 392 (424)
T KOG0652|consen 313 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIA 392 (424)
T ss_pred EEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCHHHHHHHHHHHHc
Q 005815 435 GRRGKANITLKEIDDSIDRIVA 456 (676)
Q Consensus 435 ~r~~~~~It~~di~~Ai~~v~~ 456 (676)
.|++...|+.+||.+++..+..
T Consensus 393 LRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 393 LRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred HhcccccccHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-44 Score=393.76 Aligned_cols=228 Identities=45% Similarity=0.802 Sum_probs=216.3
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
+..+++|+||+|++....+|.+++..+++|+.|..+|..+|+|||||||||||||+||+|+|+++++||+.+++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC----CCeEEEEecCCc
Q 005815 287 FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN----SGVIVIAATNRP 362 (676)
Q Consensus 287 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~----~~ViVIaaTN~~ 362 (676)
+.|++++++|++|++|+..+|||+||||||+++++|.. .+.+-.++++.|||+.||++... .+|+||+|||+|
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999865 23444567999999999998654 579999999999
Q ss_pred ccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 005815 363 EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRR 437 (676)
Q Consensus 363 ~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 437 (676)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++..++.++|+..||..|+||.||||..||.+|+..|.+|
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876
No 17
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=2.2e-43 Score=356.10 Aligned_cols=210 Identities=43% Similarity=0.675 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHHcCcCCC-ccccccchhhhHHHHHHHHHHHHhCCCCCCCceeeeccCCCccceeeccCCCCccccCHH
Q 005815 443 TLKEIDDSIDRIVAGMEGT-KMTDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLPEEDPALISKQ 521 (676)
Q Consensus 443 t~~di~~Ai~~v~~g~~~~-~~~~~~~~~~~A~hEaghal~a~~l~~~~~v~~vti~~r~~~~G~~~~~~~~~~~~~t~~ 521 (676)
|++||++|+++++.|.+++ ...++++++++|||||||||+++++++.++|.++||+|||.++||+.+.|.++....||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 6899999999999999885 556788899999999999999999998899999999999999999999998887789999
Q ss_pred HHHHHHHhchhhhhhhhhhcCCCCcccCchhHHHHHHHHHHHHHHHhCCCC-CCCccccCCCcchhhHHH-HHhhccccc
Q 005815 522 QLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQITQIARQMVTRYGMSE-IGPWTLIDPSVQSSDVVM-RMLARNSMS 599 (676)
Q Consensus 522 ~l~~~i~~~LaGraAE~~~~g~~~~~~Ga~~DL~~AT~lA~~mv~~~Gms~-~G~~~~~~~~~~~~d~l~-~~~~~~~~s 599 (676)
+++++|+++|||||||+++||.+++|+|+++||++||+||++||.+||||+ +|++.+...... ..|++ .+....++|
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~s 159 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDD-EVFLGREWNSRRPMS 159 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S--SSS-E---EEESS-
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccc-cccccccccccCCcc
Confidence 999999999999999999999878999999999999999999999999998 999887543211 01221 222346799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHH
Q 005815 600 EKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAV 653 (676)
Q Consensus 600 e~~~~~id~ev~~ll~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~i 653 (676)
+++...+|.+|+++|++||++|+++|++||+.|++||++|+++++|+++||++|
T Consensus 160 ~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 160 EETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999986
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=373.64 Aligned_cols=254 Identities=39% Similarity=0.671 Sum_probs=239.4
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
.....++++|+||+|++.+|+++++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.+++
T Consensus 135 ~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 135 QMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred cccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 34557889999999999999999999986 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
+...|.|.+...++++|..|+..+||||||||+|.++.+|.....+.+.+.++++.+++.++|++....+++||++||++
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~ 294 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA 294 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999998876554555667788999999999999888899999999999
Q ss_pred ccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCC
Q 005815 363 EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANI 442 (676)
Q Consensus 363 ~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I 442 (676)
+.+||+++||||||+.|+|++|+.++|.+||+.++.+..+..++++..++..|+||||+||.++|++|.+.|.++++..|
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i 374 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVI 374 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999898999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 005815 443 TLKEIDDSIDRIVAG 457 (676)
Q Consensus 443 t~~di~~Ai~~v~~g 457 (676)
+.+||.+|+.+++.+
T Consensus 375 ~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 375 LPKDFEKGYKTVVRK 389 (398)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998765
No 19
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.5e-42 Score=342.31 Aligned_cols=242 Identities=38% Similarity=0.663 Sum_probs=224.2
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+..++++|+||+|++++|+..+-++.+|.+|+.|..+ .|++||+|||||||||++|||+|+++++||+.+...+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 4457899999999999999999999999999998765 5789999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
.++|.++++++++|+.|++.+|||+||||+|+++-.|.-.. -......++|.||++||++..+.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe--lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE--LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH--hcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 99999999999999999999999999999999986553211 1123567999999999999999999999999999999
Q ss_pred cccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHH-HHHHHHHHHHHHcCCCCCCH
Q 005815 366 DSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLA-NLMNEAAILAGRRGKANITL 444 (676)
Q Consensus 366 d~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~-~lv~~A~~~A~r~~~~~It~ 444 (676)
|+++++ ||...|+|.+|+.++|..|++.+++..++.-+.++..++..|.|+||+||. .++..|...|...++..|+.
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ 345 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVER 345 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhH
Confidence 999999 999999999999999999999999999999899999999999999999997 48899999999999999999
Q ss_pred HHHHHHHHHH
Q 005815 445 KEIDDSIDRI 454 (676)
Q Consensus 445 ~di~~Ai~~v 454 (676)
+||+.|+.+.
T Consensus 346 edie~al~k~ 355 (368)
T COG1223 346 EDIEKALKKE 355 (368)
T ss_pred HHHHHHHHhh
Confidence 9999999873
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-42 Score=379.30 Aligned_cols=247 Identities=40% Similarity=0.723 Sum_probs=223.8
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+-|+++|+||+|.+++|.++.+-+.. |++|+.|.. |.+...|||||||||||||++|||+|.|+...|+++.+.++.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 45789999999999999999999988 899988754 7777889999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC--CCCeEEEEecCCcc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG--NSGVIVIAATNRPE 363 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~--~~~ViVIaaTN~~~ 363 (676)
||+|++++++|++|++|+..+|||||+||+|+++++|+.+.. +..-+.+++.|||.+||++.. ..+|+||+|||+||
T Consensus 744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD-SGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD-SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC-ccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 999999999999999999999999999999999999986432 233578899999999999984 56899999999999
Q ss_pred cccccccCCCccceEEecCCC-CHHHHHHHHHHHhcCCCCCccccHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHcCC--
Q 005815 364 ILDSALHRPGRFDRQVSVGLP-DIRGREQILKVHSNNKKLDKDVSLSVIATRTP-GFSGADLANLMNEAAILAGRRGK-- 439 (676)
Q Consensus 364 ~Ld~aLlrpGRfd~~I~v~~P-d~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~-G~sgadL~~lv~~A~~~A~r~~~-- 439 (676)
.|||+|+||||||+.+++.++ |.+.+..+|+...++..+++++|+.++|+.++ .|||||+-.+|..|.+.|.+|.-
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 56777899999999999999999999999985 79999999999999999987621
Q ss_pred ---------------CCCCHHHHHHHHHHHH
Q 005815 440 ---------------ANITLKEIDDSIDRIV 455 (676)
Q Consensus 440 ---------------~~It~~di~~Ai~~v~ 455 (676)
-.|+++||-++.++..
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~ 933 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQ 933 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcC
Confidence 1378899998888764
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=354.69 Aligned_cols=245 Identities=39% Similarity=0.640 Sum_probs=223.0
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
..++.++|+||+|++++|+-|+|.|-. +..|+.|+. ..++.+|||++||||||||+||||+|.|++..|+.++.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 356789999999999999999998876 788887764 456679999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC-CC---eEEEEecC
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN-SG---VIVIAATN 360 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~-~~---ViVIaaTN 360 (676)
++|-|++++.+|-+|+.|+.++|++|||||||+|+.+|+. .+.++...++-++||.+|||.... .+ |+|+|+||
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~--s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG--SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC--ccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 9999999999999999999999999999999999999876 356777888999999999998653 23 89999999
Q ss_pred CcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC-
Q 005815 361 RPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK- 439 (676)
Q Consensus 361 ~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~- 439 (676)
.|+.||+||+| ||...|+||+||.++|..+++..++....+++++++.|++.++||||+||.++|++|.+.+.|+.-
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999988632
Q ss_pred ----------------CCCCHHHHHHHHHHHH
Q 005815 440 ----------------ANITLKEIDDSIDRIV 455 (676)
Q Consensus 440 ----------------~~It~~di~~Ai~~v~ 455 (676)
..|++.||++|+.++.
T Consensus 439 g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~ 470 (491)
T KOG0738|consen 439 GLTPREIRQLAKEEPKMPVTNEDFEEALRKVR 470 (491)
T ss_pred cCCcHHhhhhhhhccccccchhhHHHHHHHcC
Confidence 2377788888887763
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.6e-40 Score=362.32 Aligned_cols=258 Identities=45% Similarity=0.743 Sum_probs=241.0
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
.....+.++|+||+|.+++++++.+.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34556789999999999999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
+...|.|.+...++.+|+.|+.++||||||||+|.++.++.....+++.+.++++.+++.+++++....+++||+|||++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~ 280 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI 280 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999998876655555667788999999999999888899999999999
Q ss_pred ccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCC
Q 005815 363 EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANI 442 (676)
Q Consensus 363 ~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I 442 (676)
+.+|++++||||||+.|+|++|+.++|.+||+.|+++..+..++++..++..|.||+|+||+++|++|...|.+++...|
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i 360 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEV 360 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCcCCC
Q 005815 443 TLKEIDDSIDRIVAGMEGT 461 (676)
Q Consensus 443 t~~di~~Ai~~v~~g~~~~ 461 (676)
+.+||.+|++++..+....
T Consensus 361 ~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 361 TMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHHHHHhcccccc
Confidence 9999999999997665443
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=363.84 Aligned_cols=255 Identities=39% Similarity=0.680 Sum_probs=240.1
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS 281 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s 281 (676)
+.+++.+.++|+||.|++++++++++.+.. +.+++.|..+|...|+|+|||||||||||++|+++|++++.+|+.++++
T Consensus 172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s 251 (438)
T PTZ00361 172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS 251 (438)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc
Confidence 345567889999999999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
++...|.|.+...++.+|..|+.+.||||||||||.++.+|....+++..+.++++.++|.++|++....++.||+|||+
T Consensus 252 eL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr 331 (438)
T PTZ00361 252 ELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR 331 (438)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC
Confidence 99999999999999999999999999999999999999888665556667778889999999999988889999999999
Q ss_pred cccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 005815 362 PEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKAN 441 (676)
Q Consensus 362 ~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~ 441 (676)
++.+|++++||||||+.|+|++||.++|.+||+.|+.+..+..++++..++..+.|+||+||.++|++|...|.++++..
T Consensus 332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~ 411 (438)
T PTZ00361 332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMK 411 (438)
T ss_pred hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcC
Q 005815 442 ITLKEIDDSIDRIVAG 457 (676)
Q Consensus 442 It~~di~~Ai~~v~~g 457 (676)
|+.+||..|++++...
T Consensus 412 Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 412 VTQADFRKAKEKVLYR 427 (438)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999998654
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=350.96 Aligned_cols=229 Identities=42% Similarity=0.749 Sum_probs=217.3
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
.+.+++.|+||.|+.++|+.|++++.+ -+.|..|.+.+.+.+.|||||||||||||+||.|+|..++..|+++.+.++.
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 355679999999999999999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
++|.|.+++.+|++|.+|+..+|||||+||+|+++++|+....+ -..+++||||++|||...-.||.|+|+|.+|+.
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG---VTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG---VTDRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC---chHHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 99999999999999999999999999999999999999864333 346799999999999999999999999999999
Q ss_pred ccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 005815 365 LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRR 437 (676)
Q Consensus 365 Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 437 (676)
+||||+||||+|+.+.-+.|+..+|.+|++.......++.++|++.+|..|+||+||||..++-.|.+.|.++
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888754
No 25
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=330.53 Aligned_cols=250 Identities=38% Similarity=0.658 Sum_probs=238.6
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
+....++|+++.|.-++..++++.++. +.+|+.|..+|.++|+|++||||||||||++|+++|..+|++|+.++.+++.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 445678999999999999999999887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
+.+.|+.++.+|+.|..|+.+.|||||+||||++++++.+.....+.+.+.++.+|+.+||+|.....|-+|+|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999999988766667788899999999999999999999999999999999
Q ss_pred ccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCH
Q 005815 365 LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITL 444 (676)
Q Consensus 365 Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~ 444 (676)
|||+|+||||+|+.+++|+|+...|..|++.|.........+|.+.+.+..+||+|+|+++.|.||...|.+..+..+-+
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~ 363 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLH 363 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhH
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005815 445 KEIDDSIDRIV 455 (676)
Q Consensus 445 ~di~~Ai~~v~ 455 (676)
+|+..++.++.
T Consensus 364 Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 364 EDFMKLVRKQA 374 (388)
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 26
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.4e-37 Score=338.57 Aligned_cols=253 Identities=46% Similarity=0.779 Sum_probs=235.8
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~ 280 (676)
.+.....+.++|+||+|.+++++++.+.+.. +.+++.|..+|...|+|+|||||||||||++|+++|++++.+|+.+.+
T Consensus 110 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~ 189 (364)
T TIGR01242 110 GMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 189 (364)
T ss_pred cceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch
Confidence 3445567889999999999999999999876 799999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 281 SEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 281 s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
+++...+.|.+...++.+|..++...|+||||||+|.++.++.....+++.+.+..+.+++.+++++...+++.||+|||
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn 269 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN 269 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999887765555556677888999999999988778899999999
Q ss_pred CcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 005815 361 RPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKA 440 (676)
Q Consensus 361 ~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~ 440 (676)
+++.+|++++||||||+.|.|+.|+.++|.+|++.++.+..+..++++..+++.+.||+|+||.++|++|...|.++++.
T Consensus 270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~ 349 (364)
T TIGR01242 270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERD 349 (364)
T ss_pred ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998888888889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 005815 441 NITLKEIDDSIDRI 454 (676)
Q Consensus 441 ~It~~di~~Ai~~v 454 (676)
.|+.+||.+|++++
T Consensus 350 ~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 350 YVTMDDFIKAVEKV 363 (364)
T ss_pred ccCHHHHHHHHHHh
Confidence 99999999999876
No 27
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-38 Score=355.27 Aligned_cols=245 Identities=47% Similarity=0.784 Sum_probs=229.3
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
..+.++|+|++|.+.+|+++++.+.+ +..++.|...+...|+|+|||||||||||+||+|+|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45789999999999999999999999 78899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+|+|.+++.++.+|..|+..+||||||||+|++...|+... +....+++++||.+|++.....+|+||++||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 99999999999999999999999999999999998886532 222368999999999999999999999999999999
Q ss_pred cccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC-CCCC
Q 005815 366 DSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG-KANI 442 (676)
Q Consensus 366 d~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~-~~~I 442 (676)
|++++||||||+.++|++||..+|.+|++.|+.... +..++++..+++.|.||+|+||.++|++|.+.+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999998544 4578999999999999999999999999999999988 7789
Q ss_pred CHHHHHHHHHHH
Q 005815 443 TLKEIDDSIDRI 454 (676)
Q Consensus 443 t~~di~~Ai~~v 454 (676)
+++||.+|+.++
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999874
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1e-37 Score=367.58 Aligned_cols=246 Identities=43% Similarity=0.760 Sum_probs=228.1
Q ss_pred CCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
.+.++|+||+|++.+|++|++.+.+ +.+++.|..+|...|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4578999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 287 FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 287 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
|+|.+++.++.+|..|+..+||||||||||.++++|+... .....++++++||.+||++....+++||+|||+|+.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998776422 23345779999999999998888999999999999999
Q ss_pred ccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC--------
Q 005815 367 SALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG-------- 438 (676)
Q Consensus 367 ~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~-------- 438 (676)
++++||||||++|++++||.++|.+||+.+.++..+..++++..+|..|+||||+||.++|++|...|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999988899999999999999999999999999999998742
Q ss_pred ----------CCCCCHHHHHHHHHHHH
Q 005815 439 ----------KANITLKEIDDSIDRIV 455 (676)
Q Consensus 439 ----------~~~It~~di~~Ai~~v~ 455 (676)
...|+.+||.+|+.++.
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcC
Confidence 12689999999998763
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.5e-37 Score=342.81 Aligned_cols=242 Identities=29% Similarity=0.460 Sum_probs=213.8
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMF 287 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~ 287 (676)
+++++|+||+|++.+|+++.+....+ +......|...|+|+|||||||||||++|+++|++++.||+.++++.+..++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35789999999999999999866543 3445677999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccc
Q 005815 288 VGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDS 367 (676)
Q Consensus 288 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~ 367 (676)
+|.++.+++.+|..|+..+||||||||||.++.++.. .+......+++++|+..|++ .+.+|+||+|||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~--~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES--KGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC--CCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 9999999999999999999999999999999865432 12234567788999999874 3567999999999999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC--ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 005815 368 ALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD--KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLK 445 (676)
Q Consensus 368 aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~--~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~ 445 (676)
+++|+||||+.+++++|+.++|.+||+.|+.+.... .+.++..+++.|+||||+||+++|++|...|..++ ..++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHH
Confidence 999999999999999999999999999999876532 47889999999999999999999999999998765 568999
Q ss_pred HHHHHHHHHHc
Q 005815 446 EIDDSIDRIVA 456 (676)
Q Consensus 446 di~~Ai~~v~~ 456 (676)
|+..|+.++.+
T Consensus 455 dl~~a~~~~~P 465 (489)
T CHL00195 455 DILLALKQFIP 465 (489)
T ss_pred HHHHHHHhcCC
Confidence 99999987753
No 30
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-38 Score=319.31 Aligned_cols=227 Identities=35% Similarity=0.646 Sum_probs=204.5
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
+...+++.|+||+|.+.+|+.|++.|-. ++.|+.|.. +..+.+|+||||||||||++||+|+|.+++..|++++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 4467899999999999999999998866 788887753 34456899999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-CCCeEEEEecCCc
Q 005815 284 IEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-NSGVIVIAATNRP 362 (676)
Q Consensus 284 ~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~~ 362 (676)
+++|+|++++.++.+|+.|+.+.|+||||||||+++..|+. +.++...++-.+||.+|.|.-. +.+|+|+++||-|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999988764 3455567888899999999865 5689999999999
Q ss_pred ccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 005815 363 EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRR 437 (676)
Q Consensus 363 ~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 437 (676)
+.||.|++| ||++.|++|+|+...|..+++.|+...+.. .+.|+..|++.|+||||+||.-+|+.|.+.-.|.
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999877643 5668999999999999999999999999887664
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=316.12 Aligned_cols=225 Identities=43% Similarity=0.666 Sum_probs=208.7
Q ss_pred CCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhC-CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g-~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
.-+++|+||.|.++++++++++|.. ++.|+.|...+ ..+|+|||||||||||||++|+|+|.++|.+|+.++++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3578999999999999999999987 89999885333 457899999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCC--eEEEEecCCcc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSG--VIVIAATNRPE 363 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~--ViVIaaTN~~~ 363 (676)
+|.|++.+.++.+|..|.+-+||||||||+|.+.+.|. .+.++.....-++|....||+.++.+ |+|+||||+|.
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999998883 34566677788899999999988765 99999999999
Q ss_pred cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 005815 364 ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRR 437 (676)
Q Consensus 364 ~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 437 (676)
.||.|++| |+.++++|+.|+..+|.+||+..+++.++++++|+..+|..|.||||.||.++|+.|+....+.
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999888764
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.3e-34 Score=320.74 Aligned_cols=254 Identities=32% Similarity=0.583 Sum_probs=209.4
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------- 274 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------- 274 (676)
..+..++++|+||+|++++++++++.+.. +.+++.|...|..+|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34567889999999999999999999877 889999999999999999999999999999999999998654
Q ss_pred --EEEEechhHHHHHhhhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC
Q 005815 275 --FFSLSGSEFIEMFVGVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT 348 (676)
Q Consensus 275 --~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~ 348 (676)
|+.++++++..+|+|..+..++.+|+.|+.. .||||||||+|.++++|+.+. +++....++++||.+||++.
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccc
Confidence 6677888999999999999999999998764 699999999999998876432 23334668899999999998
Q ss_pred CCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC-CCCc---------cccHHHHHHh----
Q 005815 349 GNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK-KLDK---------DVSLSVIATR---- 414 (676)
Q Consensus 349 ~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~-~l~~---------d~dl~~La~~---- 414 (676)
..++++||+|||+++.|||+++||||||++|+|++|+.++|.+||+.++... ++.. ..++..+++.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~ 409 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDH 409 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999998642 2211 1112222221
Q ss_pred -------------------------CCCCcHHHHHHHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHHcCcC
Q 005815 415 -------------------------TPGFSGADLANLMNEAAILAGRR----GKANITLKEIDDSIDRIVAGME 459 (676)
Q Consensus 415 -------------------------t~G~sgadL~~lv~~A~~~A~r~----~~~~It~~di~~Ai~~v~~g~~ 459 (676)
++.+||++|+++|.+|...|.++ +...|+.+|+..|+..-....+
T Consensus 410 ~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~ 483 (512)
T TIGR03689 410 LYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESE 483 (512)
T ss_pred HhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccc
Confidence 34577888888888888777755 3457888888888877654433
No 33
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-33 Score=298.54 Aligned_cols=250 Identities=36% Similarity=0.599 Sum_probs=212.5
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHH-----HhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-CEEEE
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQ-----FLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSL 278 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~-----~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-p~i~i 278 (676)
....++..|+++ |+....++...+.. .+..|+..+++|.+..+|+|||||||||||++||.+..-++. +--.+
T Consensus 210 ~ii~Pdf~Fe~m-GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIV 288 (744)
T KOG0741|consen 210 SIINPDFNFESM-GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIV 288 (744)
T ss_pred cccCCCCChhhc-ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCccc
Confidence 345678899985 44444445544433 366788999999999999999999999999999999998854 44568
Q ss_pred echhHHHHHhhhhhHHHHHHHHHHhhC--------CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 279 SGSEFIEMFVGVGASRVRDLFNKAKAN--------SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 279 s~s~~~~~~~g~~~~~vr~lF~~A~~~--------~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
++.+..++|+|++++++|.+|..|... .--||++||||+++++|++. +++..-..+++||||..|||...-
T Consensus 289 NGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~-~g~TGVhD~VVNQLLsKmDGVeqL 367 (744)
T KOG0741|consen 289 NGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM-AGSTGVHDTVVNQLLSKMDGVEQL 367 (744)
T ss_pred CcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC-CCCCCccHHHHHHHHHhcccHHhh
Confidence 999999999999999999999998541 12499999999999999864 333445678999999999999998
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC----CCCccccHHHHHHhCCCCcHHHHHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK----KLDKDVSLSVIATRTPGFSGADLANL 426 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~----~l~~d~dl~~La~~t~G~sgadL~~l 426 (676)
.+|+||+-||+.|.+|+||+|||||..++++.+||.+.|.+|++.|.+++ .++.++|+.+||.+|..||||+|+.+
T Consensus 368 NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAElegl 447 (744)
T KOG0741|consen 368 NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGL 447 (744)
T ss_pred hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999998764 36799999999999999999999999
Q ss_pred HHHHHHHHHHcCC---------------CCCCHHHHHHHHHHHHc
Q 005815 427 MNEAAILAGRRGK---------------ANITLKEIDDSIDRIVA 456 (676)
Q Consensus 427 v~~A~~~A~r~~~---------------~~It~~di~~Ai~~v~~ 456 (676)
|+.|...|..+.- -.|+++||..|++.+.+
T Consensus 448 VksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 448 VKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 9999999976521 24899999999997753
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.1e-31 Score=283.33 Aligned_cols=262 Identities=18% Similarity=0.217 Sum_probs=197.1
Q ss_pred CCCccccc-ccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHH
Q 005815 209 TGVTFDDV-AGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMF 287 (676)
Q Consensus 209 ~~~~f~dv-~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~ 287 (676)
...+|+++ .|+--.+.-+..++..+.... ....+.++|++++||||||||||++|+++|++++++|+.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~-l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF-LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh-hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34578888 677777777766665432221 1236889999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhh-----CCCeEEEEcCCccccccCCCCCCCCChHHHHH-HHHHHHHhccC------------CC
Q 005815 288 VGVGASRVRDLFNKAKA-----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQT-LNQLLTEMDGF------------TG 349 (676)
Q Consensus 288 ~g~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~-l~~LL~~ld~~------------~~ 349 (676)
+|++++.+|++|..|+. .+||||||||||+++++++.. +.....+. ..+|++.||+. ..
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~ 265 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEE 265 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCcccccccccccccc
Confidence 99999999999999975 469999999999999887631 22222344 47899988863 33
Q ss_pred CCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCC----CcHHHHHH
Q 005815 350 NSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPG----FSGADLAN 425 (676)
Q Consensus 350 ~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G----~sgadL~~ 425 (676)
..+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.+++...++ ..++..|+..++| |.|+--..
T Consensus 266 ~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar 342 (413)
T PLN00020 266 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRAR 342 (413)
T ss_pred CCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHH
Confidence 567999999999999999999999999976 4799999999999999988776 5789999999987 56665566
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCCccccccchhhhHHHHHHHHHHHH
Q 005815 426 LMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTKMTDGKNKILVAYHEIGHAVCAT 484 (676)
Q Consensus 426 lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~~A~hEaghal~a~ 484 (676)
+..++...-..+ +..+.+ -.+++...+..+........+-++-|.||.++..
T Consensus 343 ~yd~~v~~~i~~----~g~~~~---~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 343 VYDDEVRKWIAE----VGVENL---GKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHHHH----hhHHHH---HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 666665443322 122222 2233333222222222334455677889888764
No 35
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-32 Score=300.97 Aligned_cols=237 Identities=43% Similarity=0.704 Sum_probs=222.3
Q ss_pred CCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMF 287 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~ 287 (676)
..++ +++.|.......+++.+.. +.++..|...|.++|+|+|+|||||||||.+++++|++.++.++.++++++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 8999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhCC-CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 288 VGVGASRVRDLFNKAKANS-PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 288 ~g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
.|++++.+|..|+.|.+++ |+||||||+|++.++|... +....++..+|+..||+.....+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 9999999999999888642 2245678999999999999889999999999999999
Q ss_pred ccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 005815 367 SALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKE 446 (676)
Q Consensus 367 ~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~d 446 (676)
++++| ||||+.+.+..|+..+|.+|++.+.+++++..++++..+|..|+||.|+||.++|++|...+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999988899999999999999999999999999999887 8888
Q ss_pred HHHHHHHHHc
Q 005815 447 IDDSIDRIVA 456 (676)
Q Consensus 447 i~~Ai~~v~~ 456 (676)
+..|...+..
T Consensus 409 ~~~A~~~i~p 418 (693)
T KOG0730|consen 409 FQEALMGIRP 418 (693)
T ss_pred HHHHHhcCCc
Confidence 9888866543
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=7.4e-31 Score=309.41 Aligned_cols=247 Identities=47% Similarity=0.783 Sum_probs=223.9
Q ss_pred CCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
.+.++|+||+|++++++.+++.+.. +.+|+.|..+|...|+|+|||||||||||++++++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 287 FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 287 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
+.|.....++.+|+.|....|+||||||||.+..+++... ......++++|+..|+++.....++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765421 2233568899999999998888899999999999999
Q ss_pred ccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC--------
Q 005815 367 SALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG-------- 438 (676)
Q Consensus 367 ~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~-------- 438 (676)
++++|+|||++.+.++.|+.++|.+||+.+.++..+..+.++..++..++||+++|+..++++|+..+.++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999998888888899999999999999999999999999887652
Q ss_pred -----------CCCCCHHHHHHHHHHHHcC
Q 005815 439 -----------KANITLKEIDDSIDRIVAG 457 (676)
Q Consensus 439 -----------~~~It~~di~~Ai~~v~~g 457 (676)
...++.+|+..|+..+...
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhcccc
Confidence 1247889999998876543
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=308.86 Aligned_cols=249 Identities=36% Similarity=0.643 Sum_probs=220.6
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEec
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSG 280 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~ 280 (676)
.+..++|++|+|.+.++.+|++.|.. |..|+.|..++..+|+|||+|||||||||+.|+|+|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 45678999999999999999999988 899999999999999999999999999999999999988 467888889
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 281 SEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 281 s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
.+..++|+|+.+..++.+|+.|+...|+|||.||||.+++.|+. ........++..||..|||+..++.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs---kqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS---KQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc---hHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 99999999999999999999999999999999999999988854 234456678899999999999999999999999
Q ss_pred CcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 005815 361 RPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK 439 (676)
Q Consensus 361 ~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 439 (676)
+|+.+||+|+||||||+.++|++|+.++|.+|+..|.++-... ...-+..||..|.||-|+||+.+|.+|++.+.++.-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999998754421 223368899999999999999999999999987754
Q ss_pred C----------------CCCHHHHHHHHHHHHcCc
Q 005815 440 A----------------NITLKEIDDSIDRIVAGM 458 (676)
Q Consensus 440 ~----------------~It~~di~~Ai~~v~~g~ 458 (676)
. .|...||..|+.++....
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 3 256677777777665433
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-30 Score=276.83 Aligned_cols=242 Identities=37% Similarity=0.588 Sum_probs=208.3
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
..+++.|+|+.|++.+|+.+.+.+.+ +..+..|..+- .+++|+||.||||||||+|++|+|.|+++.|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34678999999999999999999998 45577776543 34679999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC--CCCeEEEEecCCcc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG--NSGVIVIAATNRPE 363 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~--~~~ViVIaaTN~~~ 363 (676)
+|+|.+++.++.+|..|+..+|+|+||||+|.++.+|.. ..++...+...++|.++++... ++.|+||+|||.|+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 999999999999999999999999999999999998843 3455566778888888887754 45799999999999
Q ss_pred cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC-CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCC--
Q 005815 364 ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK-LDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKA-- 440 (676)
Q Consensus 364 ~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~-l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~-- 440 (676)
.+|.+++| ||.+.+++++||.+.|..+|..++.+.+ ...+.+++.+++.|+||++.||.++|.+|++.-.+....
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch
Confidence 99999999 9999999999999999999999988763 335678999999999999999999999998765544332
Q ss_pred -----------CCCHHHHHHHHHHH
Q 005815 441 -----------NITLKEIDDSIDRI 454 (676)
Q Consensus 441 -----------~It~~di~~Ai~~v 454 (676)
.|+..|++.+...+
T Consensus 380 ~~~~~~~~~~r~i~~~df~~a~~~i 404 (428)
T KOG0740|consen 380 DLEFIDADKIRPITYPDFKNAFKNI 404 (428)
T ss_pred hhhhcchhccCCCCcchHHHHHHhh
Confidence 35556666666555
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-21 Score=210.12 Aligned_cols=210 Identities=25% Similarity=0.336 Sum_probs=164.5
Q ss_pred CCCCCcccccccchhhHHHHHH-HHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQE-IVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~e-lv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
-+++-+|+.|+-..+.|+++.+ +.+|++..+-|++.|....||.|||||||||||+++-|+|++++..++-++.++...
T Consensus 194 f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~ 273 (457)
T KOG0743|consen 194 FPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL 273 (457)
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC
Confidence 3456899999999999988875 556688999999999999999999999999999999999999999999988876443
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCC--C-C-hHHHHHHHHHHHHhccCCCCC--CeEEEEec
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGG--G-N-DEREQTLNQLLTEMDGFTGNS--GVIVIAAT 359 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~--~-~-~~~~~~l~~LL~~ld~~~~~~--~ViVIaaT 359 (676)
. . .++.++..+... +||+|++||+-..-+...... . . ....-++..||+.+||+-+.. .-|||.||
T Consensus 274 n-----~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 274 D-----S-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred c-----H-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEec
Confidence 2 2 377777665444 699999999986533321111 1 1 123468999999999998765 67999999
Q ss_pred CCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCC--CcHHHHHHH
Q 005815 360 NRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPG--FSGADLANL 426 (676)
Q Consensus 360 N~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G--~sgadL~~l 426 (676)
|+++.|||||+||||+|.+|++..-+..+-+.+++.++.... + ..-..++.+...+ .|+||+...
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~-h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-D-HRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-C-cchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999999987543 1 1113333333332 589988654
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.87 E-value=1e-20 Score=199.38 Aligned_cols=210 Identities=20% Similarity=0.317 Sum_probs=160.8
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCC-e--EEEEcCCCChHHHHHHHHHHhc-------CCCEEEEechh
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPK-G--VLLVGPPGTGKTLLAKAIAGEA-------GVPFFSLSGSE 282 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~-g--vLL~GPpGTGKT~LArAlA~e~-------~~p~i~is~s~ 282 (676)
+++++|++++|+++++++.++..+..+...|...++ | ++|+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 348999999999999999987777777778876653 3 8999999999999999999875 23799999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
+...++|..+...+.+|+.|. ++||||||+|.+...++ ..+.....++.|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 999999988888888888764 46999999999964322 1234466778888888754 3557888887643
Q ss_pred c-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHH----h--CCCC-cHHHHHHHHH
Q 005815 363 E-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIAT----R--TPGF-SGADLANLMN 428 (676)
Q Consensus 363 ~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~----~--t~G~-sgadL~~lv~ 428 (676)
. .++|++.+ ||+.+|.|++++.+++.+|++.++.+.. ++++. ...+.. . .+.+ +++++++++.
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 2 24689998 9999999999999999999999987654 33332 222222 2 1233 4899999998
Q ss_pred HHHHHHH
Q 005815 429 EAAILAG 435 (676)
Q Consensus 429 ~A~~~A~ 435 (676)
.|...-.
T Consensus 249 ~~~~~~~ 255 (287)
T CHL00181 249 RARMRQA 255 (287)
T ss_pred HHHHHHH
Confidence 8876543
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.4e-20 Score=194.24 Aligned_cols=210 Identities=21% Similarity=0.319 Sum_probs=159.3
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCC---eEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEech
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPK---GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSLSGS 281 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~---gvLL~GPpGTGKT~LArAlA~e~-------~~p~i~is~s 281 (676)
.+++++|++++|+.+++++.+..........|...+. +++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 4788999999999999999997666555566666443 58999999999999999999874 3478999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
++...++|.....++++|+.+. ++||||||+|.+.+. +........++.|+..|+... .++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDNR--NEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhccC--CCEEEEecCCc
Confidence 9999999999899999998874 469999999999531 122334567888999887653 44666666543
Q ss_pred cc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCC--CccccHHHHHHh---------CCCCcHHHHHH
Q 005815 362 PE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKL--DKDVSLSVIATR---------TPGFSGADLAN 425 (676)
Q Consensus 362 ~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l--~~d~dl~~La~~---------t~G~sgadL~~ 425 (676)
.+ .++|++.+ ||+..+.++.++.+++.+|++.++..... +++. +..++.. ...-+++.+.|
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 22 36789988 99999999999999999999999876543 3332 3333221 12346888999
Q ss_pred HHHHHHHHHH
Q 005815 426 LMNEAAILAG 435 (676)
Q Consensus 426 lv~~A~~~A~ 435 (676)
++..|.....
T Consensus 230 ~~e~a~~~~~ 239 (261)
T TIGR02881 230 IIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHH
Confidence 9888776554
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=4.4e-21 Score=177.00 Aligned_cols=130 Identities=46% Similarity=0.767 Sum_probs=116.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCC-CeEEEEcCCccccccCCCCCCC
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANS-PCLVFIDEIDAVGRQRGTGIGG 328 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~ 328 (676)
|||+||||||||++++.+|+.++.+++.++++++...+.+...+.++.+|..++... ||||||||+|.+..+.. ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 699999999999999999999999999999999998888899999999999999888 99999999999987761 23
Q ss_pred CChHHHHHHHHHHHHhccCCCC-CCeEEEEecCCcccccccccCCCccceEEecCC
Q 005815 329 GNDEREQTLNQLLTEMDGFTGN-SGVIVIAATNRPEILDSALHRPGRFDRQVSVGL 383 (676)
Q Consensus 329 ~~~~~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~ 383 (676)
........++.|+..++..... .+++||++||.++.++++++| +||+..|++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4666778899999999988775 569999999999999999998 89999999863
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=2.1e-20 Score=196.92 Aligned_cols=211 Identities=18% Similarity=0.270 Sum_probs=164.9
Q ss_pred cc-ccccchhhHHHHHHHHHHhcChhHHhhhCCCC--C-CeEEEEcCCCChHHHHHHHHHHhcC-------CCEEEEech
Q 005815 213 FD-DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKI--P-KGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSLSGS 281 (676)
Q Consensus 213 f~-dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~--p-~gvLL~GPpGTGKT~LArAlA~e~~-------~p~i~is~s 281 (676)
++ +++|++++|+++.+++.++..++.+...|... | .+++|+||||||||++|+++|..+. .+|+.++++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 44 69999999999999999988888888888775 2 3799999999999999999988762 379999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
++...+.|.....++++|+.|. +++|||||+|.+.+.+. ..+.....++.|+..|+.. ..+++||++++.
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~ 169 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYK 169 (284)
T ss_pred HHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 9998899988888888998874 37999999999964321 1234456778888888743 356888888764
Q ss_pred c--cc---ccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCC--CccccHHHHHHh-------CCCCcHHHHHHHH
Q 005815 362 P--EI---LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKL--DKDVSLSVIATR-------TPGFSGADLANLM 427 (676)
Q Consensus 362 ~--~~---Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l--~~d~dl~~La~~-------t~G~sgadL~~lv 427 (676)
. +. ++|++.+ ||+..|.|+.++.+++..|++.++.+... +++ ....+... .+--|++++++++
T Consensus 170 ~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~-a~~~L~~~l~~~~~~~~~GN~R~lrn~v 246 (284)
T TIGR02880 170 DRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAE-AEEAFADYIALRRTQPHFANARSIRNAI 246 (284)
T ss_pred HHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHH-HHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 3 32 4789999 99999999999999999999999887543 222 23444443 3334789999999
Q ss_pred HHHHHHHHH
Q 005815 428 NEAAILAGR 436 (676)
Q Consensus 428 ~~A~~~A~r 436 (676)
..+......
T Consensus 247 e~~~~~~~~ 255 (284)
T TIGR02880 247 DRARLRQAN 255 (284)
T ss_pred HHHHHHHHH
Confidence 888765543
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.8e-20 Score=197.04 Aligned_cols=232 Identities=25% Similarity=0.377 Sum_probs=172.4
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHh
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFV 288 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~ 288 (676)
..-.|++|+-....+..++.+...-.+.+. ...+-++||+|||||||||++||-+|...|..+-.+.+.+.... -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 334599999999999999998877655543 22344679999999999999999999999999998988886432 1
Q ss_pred hhhhHHHHHHHHHHhhCCC-eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccc
Q 005815 289 GVGASRVRDLFNKAKANSP-CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDS 367 (676)
Q Consensus 289 g~~~~~vr~lF~~A~~~~P-~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~ 367 (676)
..+...+..+|+.+++... -+|||||.|++..+|.. ..-++.....+|.||-.-- .....++++.+||+|..+|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhH
Confidence 2344678999999987554 48999999999987754 1223445678898886542 22346899999999999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhcCCCC------------------------Cc---cccHHHHHHhCCCCcH
Q 005815 368 ALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKL------------------------DK---DVSLSVIATRTPGFSG 420 (676)
Q Consensus 368 aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l------------------------~~---d~dl~~La~~t~G~sg 420 (676)
++-. |||.+|+|++|..++|.++|..|+.+.-. .. +.-+.+.|..|+||||
T Consensus 501 AV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 501 AVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred HHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9998 99999999999999999999888754211 00 1115778999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 421 ADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 421 adL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
++|..|+-.-...+.-+....++..-+++.+
T Consensus 579 REiakLva~vQAavYgsedcvLd~~lf~e~v 609 (630)
T KOG0742|consen 579 REIAKLVASVQAAVYGSEDCVLDEALFDERV 609 (630)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 9999997654433333333334444444333
No 45
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-18 Score=193.24 Aligned_cols=262 Identities=20% Similarity=0.245 Sum_probs=193.6
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC----CCEEEEechhHHHHHhh
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSLSGSEFIEMFVG 289 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~----~p~i~is~s~~~~~~~g 289 (676)
.|++-...+|++..+ ....| .-.+.+|||+||+|+|||.|+++++.++. +.+..++|+.+......
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 455555666665443 21122 22345699999999999999999999884 45677899988776666
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHh-ccCCC-CCCeEEEEecCCcccccc
Q 005815 290 VGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGFTG-NSGVIVIAATNRPEILDS 367 (676)
Q Consensus 290 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~l-d~~~~-~~~ViVIaaTN~~~~Ld~ 367 (676)
...+.++.+|..|..++|+||++|++|.+....+ ..+++.....+.++.++.++ +.+.. +..+.||++.+....++|
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~-~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS-NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc-ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 6777889999999999999999999999987222 23344445555566666433 33333 445789999999999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc----CCCCC
Q 005815 368 ALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRR----GKANI 442 (676)
Q Consensus 368 aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~----~~~~I 442 (676)
-|.+|++|+.++.++.|+..+|.+||+..+.+.... ..-|++.++..|+||...|+..++.+|...|... +...+
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kll 636 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLL 636 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999998876532 2234566999999999999999999999888732 23378
Q ss_pred CHHHHHHHHHHHHc----CcCCCccccccchhhhHHHHHHHHHHHHhC
Q 005815 443 TLKEIDDSIDRIVA----GMEGTKMTDGKNKILVAYHEIGHAVCATLT 486 (676)
Q Consensus 443 t~~di~~Ai~~v~~----g~~~~~~~~~~~~~~~A~hEaghal~a~~l 486 (676)
|.++|.++++...+ |........-+-..+-.++|+-.++...+.
T Consensus 637 tke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~ 684 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIE 684 (952)
T ss_pred hHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHh
Confidence 99999999987653 222211112223345678888888876554
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.4e-19 Score=181.84 Aligned_cols=237 Identities=22% Similarity=0.276 Sum_probs=174.2
Q ss_pred ccccccchhhHHHHHHHHHH-hcChhHHhhh-CCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CCEEEEech
Q 005815 213 FDDVAGVDEAKQDFQEIVQF-LQTPEKFAAV-GAKIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSLSGS 281 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~-g~~~p~gvLL~GPpGTGKT~LArAlA~e~~---------~p~i~is~s 281 (676)
|+.++--.+.|+.|...+.. +...+.-.+. =....+-+|||||||||||+|+||+|..+. ..++++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 55566667788877766544 3222221111 122335599999999999999999999873 458899999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhC---C--CeEEEEcCCccccccCCC-CCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKAN---S--PCLVFIDEIDAVGRQRGT-GIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~---~--P~ILfIDEID~l~~~r~~-~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
.+.++|.+++.+.+..+|++.... . -..++|||+++++..|.. ..+......-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999986542 1 236678999999987743 3344455678899999999999999999999
Q ss_pred EEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC-------------CC-----ccccHHHHHHh-CC
Q 005815 356 IAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK-------------LD-----KDVSLSVIATR-TP 416 (676)
Q Consensus 356 IaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~-------------l~-----~d~dl~~La~~-t~ 416 (676)
++|+|-.+.+|.|+.. |-|-+.++.+|+...+.+|++..+...- +. .+.....+... +.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 9999999999999999999987654210 10 11112223332 48
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 005815 417 GFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDR 453 (676)
Q Consensus 417 G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~ 453 (676)
|.||+-|+.+=--|...- -....|+.+++..|+..
T Consensus 379 gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLE 413 (423)
T ss_pred CCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHH
Confidence 999999988755444322 22357888888776543
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=2.3e-18 Score=172.22 Aligned_cols=192 Identities=25% Similarity=0.372 Sum_probs=129.1
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMF 287 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~ 287 (676)
-++.+|+|++|++++++.+.-++...+... ....++|||||||+|||+||+.+|++++.+|..++++.+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 356799999999999999987776643321 22346999999999999999999999999999999865322
Q ss_pred hhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC-----CC-----------C
Q 005815 288 VGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-----GN-----------S 351 (676)
Q Consensus 288 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-----~~-----------~ 351 (676)
...+..++.... ...||||||||.+.+ .....|+..|+.+. +. .
T Consensus 89 ----~~dl~~il~~l~--~~~ILFIDEIHRlnk--------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 89 ----AGDLAAILTNLK--EGDILFIDEIHRLNK--------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC--H--------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ----HHHHHHHHHhcC--CCcEEEEechhhccH--------------HHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 123344444433 346999999999942 23344566665442 11 2
Q ss_pred CeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005815 352 GVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEA 430 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A 430 (676)
++.+|+||++...|.+.|+. ||.....+...+.++..+|++.-.....+. ++....++|+++.| +++-..++++++
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 47899999999999999999 999999999999999999999877766654 22337889999998 677666676665
Q ss_pred H
Q 005815 431 A 431 (676)
Q Consensus 431 ~ 431 (676)
.
T Consensus 226 r 226 (233)
T PF05496_consen 226 R 226 (233)
T ss_dssp C
T ss_pred H
Confidence 3
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.79 E-value=3.1e-18 Score=184.25 Aligned_cols=221 Identities=24% Similarity=0.326 Sum_probs=163.9
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
..+.++.+|+|++|+++.++.+..++.....+ ...+.+++|+||||||||++|+++|++++..+...+++.+.
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 34566789999999999999998887654322 23466899999999999999999999999998887765432
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHh------cc-CC------CCC
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DG-FT------GNS 351 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~l------d~-~~------~~~ 351 (676)
. ...+..++... ..+++|||||||.+.. ..++.+..++... +. .. .-.
T Consensus 89 ~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 K------PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred C------hHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 1 12334444433 3568999999999942 1222232222221 00 00 012
Q ss_pred CeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005815 352 GVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEA 430 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A 430 (676)
++.+|++||++..++++|.+ ||+..+.++.|+.+++.+|++..+....+. ++..+..+++.+.| +++.+.++++.+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHH
Confidence 47889999999999999988 999999999999999999999887765543 23337889999988 568888999988
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 431 AILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 431 ~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
...|..++...|+.+++..+++.+
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Confidence 888877777889999999998654
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.3e-18 Score=191.94 Aligned_cols=222 Identities=27% Similarity=0.445 Sum_probs=180.3
Q ss_pred HHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCC
Q 005815 228 EIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSP 307 (676)
Q Consensus 228 elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P 307 (676)
+++..+.-+..-...+.+....+||+|+||||||++++++|.++|.+++.++|.++.....+..+.++...|.+|+...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 44554444333233344445569999999999999999999999999999999999998888899999999999999999
Q ss_pred eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC-CCCCeEEEEecCCcccccccccCCCccceEEecCCCCH
Q 005815 308 CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-GNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDI 386 (676)
Q Consensus 308 ~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~ 386 (676)
+|||+-++|.++..+. ++.+-...+.+++++. .|.+. +..+++||++|+..+.+++.+++ -|-..|.++.|+.
T Consensus 492 avifl~~~dvl~id~d---gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse 565 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQD---GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSE 565 (953)
T ss_pred eEEEEeccceeeecCC---CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCH
Confidence 9999999999985443 2334445566666666 34443 45679999999999999999998 6777999999999
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH---HcCC-----------------CCCCHHH
Q 005815 387 RGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAG---RRGK-----------------ANITLKE 446 (676)
Q Consensus 387 ~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~---r~~~-----------------~~It~~d 446 (676)
++|.+||+.++....+..++.+..++.+|.||+.+|++.++..+-..+. .+.. ..++++|
T Consensus 566 ~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~ed 645 (953)
T KOG0736|consen 566 EQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEED 645 (953)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHH
Confidence 9999999999999999999999999999999999999999876622221 1111 4689999
Q ss_pred HHHHHHHHH
Q 005815 447 IDDSIDRIV 455 (676)
Q Consensus 447 i~~Ai~~v~ 455 (676)
|..++++..
T Consensus 646 f~kals~~~ 654 (953)
T KOG0736|consen 646 FDKALSRLQ 654 (953)
T ss_pred HHHHHHHHH
Confidence 999999764
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=6.9e-18 Score=179.30 Aligned_cols=210 Identities=23% Similarity=0.326 Sum_probs=154.7
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhh
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVG 291 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~ 291 (676)
+|+|++|++++++.|...+...... ...+.+++|+||||||||+||+++|++++.++...+++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 7999999999999988877543221 134567999999999999999999999999887776543221
Q ss_pred hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC----------------CCCCeEE
Q 005815 292 ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT----------------GNSGVIV 355 (676)
Q Consensus 292 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~----------------~~~~ViV 355 (676)
...+...+... ..+.+|||||+|.+... .+.. |+..|+... ...++++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~---l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEEL---LYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHH---hhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11222333322 35679999999999421 1222 333332221 1134789
Q ss_pred EEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 356 IAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 356 IaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
|++||++..+++++.+ ||...+.+++|+.+++.++++..+...... ++..+..+++.+.|. ++.+.++++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHH
Confidence 9999999999999988 999899999999999999999887654433 233378899998884 577888999888777
Q ss_pred HHcCCCCCCHHHHHHHHHH
Q 005815 435 GRRGKANITLKEIDDSIDR 453 (676)
Q Consensus 435 ~r~~~~~It~~di~~Ai~~ 453 (676)
...+...|+.+++..+++.
T Consensus 210 ~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 7777778999999999877
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3e-17 Score=186.06 Aligned_cols=219 Identities=44% Similarity=0.731 Sum_probs=197.3
Q ss_pred hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEE
Q 005815 233 LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFI 312 (676)
Q Consensus 233 l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfI 312 (676)
+..+..++..+..++++++++||||||||++++++|.+ +..+..+++.+...++.+......+.+|..+...+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 35677888999999999999999999999999999999 77668889999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHH
Q 005815 313 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQI 392 (676)
Q Consensus 313 DEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~I 392 (676)
||+|.+.+++.. ........++.+++..++++. ...+++++.+|++..+|+++.+||||++.+.+..|+...+.+|
T Consensus 83 d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS---DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc---cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988765 234445678899999999998 4448899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHHc
Q 005815 393 LKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG------KANITLKEIDDSIDRIVA 456 (676)
Q Consensus 393 L~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~------~~~It~~di~~Ai~~v~~ 456 (676)
+..+........+.+...++..+.|++++++..++.++...+.++. ...++.+++.+++.++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 9999988888778889999999999999999999999999988875 345889999999998754
No 52
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=8.9e-17 Score=163.68 Aligned_cols=214 Identities=25% Similarity=0.360 Sum_probs=167.0
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHh
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFV 288 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~ 288 (676)
++.+|+|.+|++++|+.|+-.+..-+... ....++||+||||.|||+||+.+|+|+|+.+-..++..+...
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~-- 91 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP-- 91 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh--
Confidence 56789999999999999987776643322 345679999999999999999999999999999988765432
Q ss_pred hhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC----------C------CC
Q 005815 289 GVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG----------N------SG 352 (676)
Q Consensus 289 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~----------~------~~ 352 (676)
..+-.++..... .+||||||||.+.+. .+++ |.-.|+.|.- + .+
T Consensus 92 ----gDlaaiLt~Le~--~DVLFIDEIHrl~~~-----------vEE~---LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 92 ----GDLAAILTNLEE--GDVLFIDEIHRLSPA-----------VEEV---LYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ----hhHHHHHhcCCc--CCeEEEehhhhcChh-----------HHHH---hhhhhhheeEEEEEccCCccceEeccCCC
Confidence 233344444333 369999999999532 2333 3345554421 1 24
Q ss_pred eEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005815 353 VIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAA 431 (676)
Q Consensus 353 ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~ 431 (676)
+.+|+||.+...|...|+. ||.....+...+.++..+|+........+. .+....++|+++.| +++=-..|+++..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 7899999999999999988 999999999999999999999887665554 23337889999998 6777778999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHH
Q 005815 432 ILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 432 ~~A~r~~~~~It~~di~~Ai~~v 454 (676)
-.|.-++...|+.+-...|+...
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHHHh
Confidence 99998999999999888888765
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=99.72 E-value=1.9e-16 Score=178.86 Aligned_cols=212 Identities=25% Similarity=0.336 Sum_probs=152.2
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
.|++++.+.+|+||+|++++++.+.+.+..... ..+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 688999999999999999999998887754332 123678999999999999999999999999999999987
Q ss_pred HHHHHhhhhhHHHHHHHHHHhh------CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEE
Q 005815 283 FIEMFVGVGASRVRDLFNKAKA------NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVI 356 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVI 356 (676)
.... ..++.+...+.. ..+.+|+|||+|.+..+. + ...++.|+..++. .+..+|
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d---~~~~~aL~~~l~~----~~~~iI 134 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------D---RGGARAILELIKK----AKQPII 134 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------c---hhHHHHHHHHHHc----CCCCEE
Confidence 5422 122333222221 246799999999995321 1 1234455555542 234566
Q ss_pred EecCCcccccc-cccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 357 AATNRPEILDS-ALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 357 aaTN~~~~Ld~-aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
+++|.+..+++ .+.+ | ...|.|+.|+..+...+++..+...++. ++..+..|+..+.| |++.+++.....+
T Consensus 135 li~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a 207 (482)
T PRK04195 135 LTANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA 207 (482)
T ss_pred EeccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh
Confidence 77888887776 4444 4 4789999999999999999888665543 23347888887654 7888888776643
Q ss_pred HHcCCCCCCHHHHHHHH
Q 005815 435 GRRGKANITLKEIDDSI 451 (676)
Q Consensus 435 ~r~~~~~It~~di~~Ai 451 (676)
.+...|+.+++....
T Consensus 208 --~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 --EGYGKLTLEDVKTLG 222 (482)
T ss_pred --cCCCCCcHHHHHHhh
Confidence 355678888887554
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=1e-16 Score=189.23 Aligned_cols=223 Identities=24% Similarity=0.378 Sum_probs=162.1
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSL 278 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~i 278 (676)
.+-++++++|.++..+.+.+++ ... ...+++|+||||||||++++++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L---~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVL---CRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHH---hcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 4557899999998777544433 222 24579999999999999999999987 6779999
Q ss_pred echhHH--HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEE
Q 005815 279 SGSEFI--EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVI 356 (676)
Q Consensus 279 s~s~~~--~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVI 356 (676)
+++.+. ..|.|..+++++.+|+.+..+.|+||||||+|.+.+.+... ++... ..+.|...+ .++.+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~---~~~~L~~~l----~~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD---ASNLLKPAL----SSGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH---HHHHHHHHH----hCCCeEEE
Confidence 998887 46888899999999999988889999999999997654321 11111 223344444 24679999
Q ss_pred EecCCcc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC----CC-CccccHHHHHHhCCCCc-----HH
Q 005815 357 AATNRPE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK----KL-DKDVSLSVIATRTPGFS-----GA 421 (676)
Q Consensus 357 aaTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~----~l-~~d~dl~~La~~t~G~s-----ga 421 (676)
++||..+ ..|+++.| ||. .|.++.|+.+++.+||+.+.... .+ -.+..+..++..+..|- +.
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999744 47999999 996 79999999999999999665431 11 13334667777665543 33
Q ss_pred HHHHHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHH
Q 005815 422 DLANLMNEAAILAGRR----GKANITLKEIDDSIDRIV 455 (676)
Q Consensus 422 dL~~lv~~A~~~A~r~----~~~~It~~di~~Ai~~v~ 455 (676)
.--.++++|.....-+ ....|+.+|+..++.+..
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 3346677776544322 234699999999998874
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.71 E-value=2.6e-16 Score=179.21 Aligned_cols=216 Identities=22% Similarity=0.323 Sum_probs=150.9
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------C
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------G 272 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~ 272 (676)
-+.++.++.+|++++|++.+.+.++..+ . ...+.++||+||||||||++|++++.++ +
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al---~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAAL---C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHH---h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 3456788899999999999988887432 1 1235679999999999999999998643 4
Q ss_pred CCEEEEechh-------HHHHHhhhhhH----------------HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCC
Q 005815 273 VPFFSLSGSE-------FIEMFVGVGAS----------------RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGG 329 (676)
Q Consensus 273 ~p~i~is~s~-------~~~~~~g~~~~----------------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~ 329 (676)
.+|+.++|.. +.+...+.... .....+..| ...+|||||||.+.
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~---------- 188 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELH---------- 188 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCC----------
Confidence 6899999863 11111111000 001122222 34699999999994
Q ss_pred ChHHHHHHHHHHHHhccC---------C-----------------CCCCeE-EEEecCCcccccccccCCCccceEEecC
Q 005815 330 NDEREQTLNQLLTEMDGF---------T-----------------GNSGVI-VIAATNRPEILDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 330 ~~~~~~~l~~LL~~ld~~---------~-----------------~~~~Vi-VIaaTN~~~~Ld~aLlrpGRfd~~I~v~ 382 (676)
.. .++.|+..|+.- . -..++. +++||+.|+.++|++++ |+ ..+.++
T Consensus 189 -~~---~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~ 261 (531)
T TIGR02902 189 -PV---QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFR 261 (531)
T ss_pred -HH---HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCC
Confidence 22 334444443210 0 011344 45566789999999998 88 478898
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 005815 383 LPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSID 452 (676)
Q Consensus 383 ~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~ 452 (676)
+++.+++.+|++..+++..+. ++..++.++..+. +++++.++++.|+..|..+++..|+.+|++.++.
T Consensus 262 pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 889999999999998766543 2233667777664 7999999999999999888888999999999975
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.7e-16 Score=172.94 Aligned_cols=207 Identities=20% Similarity=0.281 Sum_probs=152.8
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 274 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 274 (676)
+.+++++.+|+||+|++.+...|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 45678899999999999999988776642 2345679999999999999999999998652
Q ss_pred ---------------EEEEechhHHHHHhhhhhHHHHHHHHHHh----hCCCeEEEEcCCccccccCCCCCCCCChHHHH
Q 005815 275 ---------------FFSLSGSEFIEMFVGVGASRVRDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQ 335 (676)
Q Consensus 275 ---------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~ 335 (676)
++.++... ..+...+|++.+.+. .....|+||||+|.+. ..
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~ 136 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQ 136 (484)
T ss_pred CCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HH
Confidence 22222211 112344566555543 2345699999999994 23
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005815 336 TLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR 414 (676)
Q Consensus 336 ~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~ 414 (676)
.+|.||..++.. ..++++|.+|+.++.|.+.+++ |+ .++.|..++.++-.++++..+...++. ++..+..|++.
T Consensus 137 A~NALLKtLEEP--p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~ 211 (484)
T PRK14956 137 SFNALLKTLEEP--PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK 211 (484)
T ss_pred HHHHHHHHhhcC--CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 678888888753 3568888899999999999998 87 578899999888888888887765543 34447889988
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+.| +.++.-+++..+...+ ...|+.+++.+.+
T Consensus 212 S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 212 GDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred cCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 887 6788888887766432 3468888886654
No 57
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=2.3e-16 Score=187.38 Aligned_cols=163 Identities=29% Similarity=0.397 Sum_probs=122.8
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH---------H
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI---------E 285 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~---------~ 285 (676)
+++|++++|+.+.+.+...... +......+||+||||||||++|+++|+.++.+|+.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 5889999999988866542211 111223699999999999999999999999999999875432 2
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc-----CCC--------CCC
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FTG--------NSG 352 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~-----~~~--------~~~ 352 (676)
.|+|....++...|..+....| ||||||||.+.+... ++ ..+.|+..+|. |.. .++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----GD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----CC-----HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 3566666778888888876666 899999999974321 11 13445555542 211 247
Q ss_pred eEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHh
Q 005815 353 VIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHS 397 (676)
Q Consensus 353 ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l 397 (676)
+++|+|||..+.++++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 464 v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 8999999999999999999 995 88999999999999998876
No 58
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=5.5e-16 Score=173.73 Aligned_cols=223 Identities=22% Similarity=0.353 Sum_probs=150.9
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechh
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSGSE 282 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~s~ 282 (676)
.+..+|++++.-+.-...+..+..+..++ + ....+++||||||+|||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 46678999653233222222222222222 1 223569999999999999999999987 56799999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
|...+..........-|... ...+++|+|||+|.+..++ ..++. |+..++.....+..+||+++..|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~---------~~~~~---l~~~~n~l~~~~~~iiits~~~p 255 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGKE---------RTQEE---FFHTFNALHEAGKQIVLTSDRPP 255 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCCH---------HHHHH---HHHHHHHHHHCCCcEEEECCCCH
Confidence 88766544322222223322 2256799999999985321 12222 33333322233344667666666
Q ss_pred cc---ccccccCCCccc--eEEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005815 363 EI---LDSALHRPGRFD--RQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 363 ~~---Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 435 (676)
.. +++.+.+ ||. ..+.+.+||.++|.+|++..+...+ +++++ ++.|+....| +.++|..+++.....+.
T Consensus 256 ~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 256 KELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLIAYAS 331 (450)
T ss_pred HHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence 55 6788887 996 4899999999999999999887544 34443 8888888876 88999999999888776
Q ss_pred HcCCCCCCHHHHHHHHHHHH
Q 005815 436 RRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 436 r~~~~~It~~di~~Ai~~v~ 455 (676)
..+ ..||.+.+++++..+.
T Consensus 332 ~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 332 LTG-KPITLELAKEALKDLL 350 (450)
T ss_pred hhC-CCCCHHHHHHHHHHhh
Confidence 554 5699999999998764
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.70 E-value=2e-16 Score=168.01 Aligned_cols=242 Identities=24% Similarity=0.378 Sum_probs=156.6
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHh
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFV 288 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~ 288 (676)
++.+|+|++|+++...+-.-+-..+.. ....+++||||||||||++|+.+|+..+.+|..+|.-.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------ 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------ 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc------
Confidence 467999999999876443222222222 22346999999999999999999999999999998754
Q ss_pred hhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC--Cc
Q 005815 289 GVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN--RP 362 (676)
Q Consensus 289 g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN--~~ 362 (676)
.+.+.+|.+|+.|+.. ...||||||||.+.+. ....||-.++ ++.|++|+||. ..
T Consensus 84 -~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATTENPs 144 (436)
T COG2256 84 -SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATTENPS 144 (436)
T ss_pred -ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccCCCCC
Confidence 3446789999998653 2479999999999533 2345777764 56688887763 34
Q ss_pred ccccccccCCCccceEEecCCCCHHHHHHHHHHHhc--CCCCC------ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 363 EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN--NKKLD------KDVSLSVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 363 ~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~--~~~l~------~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
-.+.++|++ |. +++.+.+.+.++..++++..+. ..++. ++..+..++..+.|- .+-.-|++..+...+
T Consensus 145 F~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD-~R~aLN~LE~~~~~~ 220 (436)
T COG2256 145 FELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD-ARRALNLLELAALSA 220 (436)
T ss_pred eeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch-HHHHHHHHHHHHHhc
Confidence 579999999 76 7889999999999999887332 22232 233367788877762 222223444444333
Q ss_pred HHcCCCCCCHHHHHHHHHHHHcCcCCCccccccchhhhHHHHH---------HHHHHHHhCCCCCCC
Q 005815 435 GRRGKANITLKEIDDSIDRIVAGMEGTKMTDGKNKILVAYHEI---------GHAVCATLTPGHDPV 492 (676)
Q Consensus 435 ~r~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~~A~hEa---------ghal~a~~l~~~~~v 492 (676)
+.+. .++.+++++.+.+......+. .+.--..+.|+|.. =|.++..+-.+.||.
T Consensus 221 -~~~~-~~~~~~l~~~l~~~~~~~Dk~--gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~ 283 (436)
T COG2256 221 -EPDE-VLILELLEEILQRRSARFDKD--GDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPL 283 (436)
T ss_pred -CCCc-ccCHHHHHHHHhhhhhccCCC--cchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHH
Confidence 2222 445788887776643211111 11111234566642 266666665565554
No 60
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.70 E-value=1e-15 Score=169.31 Aligned_cols=242 Identities=24% Similarity=0.362 Sum_probs=158.2
Q ss_pred CCCCcccc-cccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEech
Q 005815 208 NTGVTFDD-VAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSGS 281 (676)
Q Consensus 208 ~~~~~f~d-v~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~s 281 (676)
++..+|++ ++|.+. ......+.....++ + ....+++||||||+|||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKSN-RLAHAAALAVAENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCcH-HHHHHHHHHHHhCc------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 45678999 456433 22222222222222 1 224569999999999999999999987 6789999999
Q ss_pred hHHHHHhhhhhH-HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 282 EFIEMFVGVGAS-RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 282 ~~~~~~~g~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
+|...+...... ....+.+.. ..+.+|+|||+|.+..+. ..+..+..++..+ ..++..+||+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~---~~~~~~iiits~~ 241 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGKE---------RTQEEFFHTFNAL---HENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCCH---------HHHHHHHHHHHHH---HHCCCCEEEecCC
Confidence 987665433221 122222222 235799999999985321 1222233333332 2233456666666
Q ss_pred Cccc---ccccccCCCccce--EEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 361 RPEI---LDSALHRPGRFDR--QVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 361 ~~~~---Ld~aLlrpGRfd~--~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
.|.. +++.+.+ ||.. .+.+++||.++|.+|++..+....+. ++..+..||....+ +.++|+.+++.....|
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 6654 5677877 8864 79999999999999999998765543 33347888888775 7899999999988887
Q ss_pred HHcCCCCCCHHHHHHHHHHHHcCcCCCccccccchhhhHHHHHHHHHHHHh
Q 005815 435 GRRGKANITLKEIDDSIDRIVAGMEGTKMTDGKNKILVAYHEIGHAVCATL 485 (676)
Q Consensus 435 ~r~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~~A~hEaghal~a~~ 485 (676)
...+ ..||.+.+++++....... +..+..+++-++++.++
T Consensus 319 ~~~~-~~it~~~~~~~L~~~~~~~----------~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 319 SLTG-KPITLELAKEALKDLLRAK----------KKEITIENIQEVVAKYY 358 (405)
T ss_pred HHhC-CCCCHHHHHHHHHHhcccc----------CCCCCHHHHHHHHHHHc
Confidence 6544 6699999999887653221 12345566777776643
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5.6e-16 Score=173.52 Aligned_cols=207 Identities=20% Similarity=0.304 Sum_probs=147.0
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 273 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~----------- 273 (676)
.+++++.+|+||+|++.+++.|...+. . .+.|.++||+||||||||++|+++|+.+++
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~---~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALK---K--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHH---c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 357788999999999999888776553 1 235677999999999999999999998764
Q ss_pred -------------CEEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHH
Q 005815 274 -------------PFFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQT 336 (676)
Q Consensus 274 -------------p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~ 336 (676)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+. ...
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a 133 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEA 133 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHH
Confidence 244444421 1123445665555442 234699999999994 234
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005815 337 LNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRT 415 (676)
Q Consensus 337 l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t 415 (676)
++.|+..++... ..+++|++|+.+..+++++.+ |+ ..+.+.+|+.++...+++..+...++. ++..+..|++.+
T Consensus 134 ~~~LLk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 134 FNALLKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred HHHHHHHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 677888887533 457777777778899999998 87 589999999999999998887654432 233478888877
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 005815 416 PGFSGADLANLMNEAAILAGRRGKANITLKEIDDSID 452 (676)
Q Consensus 416 ~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~ 452 (676)
.| +.+++-+.+..+... .+ ..||.+++.+++.
T Consensus 209 ~G-dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 209 SG-GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred CC-CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 65 455555555544332 22 3499999988863
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=7.6e-16 Score=176.28 Aligned_cols=205 Identities=17% Similarity=0.264 Sum_probs=150.8
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 274 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 274 (676)
..+++++.+|+||+|++.+++.|++.+. +.++++.+||+||+|||||++++++|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 4567899999999999999998887654 22456679999999999999999999988652
Q ss_pred ---------------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHH
Q 005815 275 ---------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQ 335 (676)
Q Consensus 275 ---------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~ 335 (676)
++.++.++ ..+.+.++++++.+.. ....|+||||+|.|. ..
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~ 134 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NH 134 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HH
Confidence 22222211 1223456777766542 234699999999993 23
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005815 336 TLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR 414 (676)
Q Consensus 336 ~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~ 414 (676)
..|.||+.|+... .++++|.+||.++.|.+.+++ |+ .++.|..++.++..++|+..+...++. ++..+..|++.
T Consensus 135 A~NALLKtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 135 AFNAMLKTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA 209 (830)
T ss_pred HHHHHHHHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5688888887543 467888889999999999988 88 789999999999999998888765543 34447888888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAILAGRRGKANITLKEIDD 449 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~ 449 (676)
+.| +.++..+++.++..+. ...|+.+++..
T Consensus 210 A~G-smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 210 AQG-SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 887 6778778877766432 23466665543
No 63
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=8.5e-16 Score=180.18 Aligned_cols=223 Identities=22% Similarity=0.343 Sum_probs=157.6
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEe
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSLS 279 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~is 279 (676)
.=.++.++|.++..+.+.+++.. ..+.++||+||||||||++|+++|... +..++.++
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 34578899999877766654433 124568999999999999999999864 45566666
Q ss_pred chhHH--HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEE
Q 005815 280 GSEFI--EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIA 357 (676)
Q Consensus 280 ~s~~~--~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIa 357 (676)
.+.+. ..|.|..+.+++.+|..+....++||||||||.+.+.+.. .++......++..++ .++.+.||+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L-------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLL-------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHH-------hCCCeEEEe
Confidence 66655 3567888899999999988888999999999999765432 112222222333332 356799999
Q ss_pred ecCCcc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccc-----cHHHHHHhC-----CCCcHHH
Q 005815 358 ATNRPE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDV-----SLSVIATRT-----PGFSGAD 422 (676)
Q Consensus 358 aTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~-----dl~~La~~t-----~G~sgad 422 (676)
+|+.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+........++ .+...+..+ .-+-+..
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHH
Confidence 999875 47999999 996 79999999999999999776543322222 233333333 2344567
Q ss_pred HHHHHHHHHHHHH----HcCCCCCCHHHHHHHHHHHHc
Q 005815 423 LANLMNEAAILAG----RRGKANITLKEIDDSIDRIVA 456 (676)
Q Consensus 423 L~~lv~~A~~~A~----r~~~~~It~~di~~Ai~~v~~ 456 (676)
.-.++.+|+.... ...+..|+.+|+.+.+.+...
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 7788888875442 223456999999999888753
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=5.3e-16 Score=175.57 Aligned_cols=206 Identities=17% Similarity=0.247 Sum_probs=151.6
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 274 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 274 (676)
+.+++++.+|+||+|++.+++.|.+.+.. .+++..+||+||+|+|||++|+.+|+.+++.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 45678899999999999999988877652 2456679999999999999999999998761
Q ss_pred --------------------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCC
Q 005815 275 --------------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGN 330 (676)
Q Consensus 275 --------------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~ 330 (676)
++.++.++ ..+.+.+|++.+.+.. ....|+||||+|.|.
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls----------- 137 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT----------- 137 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------
Confidence 12222110 1223456776666542 334799999999994
Q ss_pred hHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCc-cccHH
Q 005815 331 DEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDK-DVSLS 409 (676)
Q Consensus 331 ~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~-d~dl~ 409 (676)
....|.||+.|+.. ..++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+...++.. +..+.
T Consensus 138 ---~~AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~ 209 (700)
T PRK12323 138 ---NHAFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALR 209 (700)
T ss_pred ---HHHHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 24678899998864 3467888889999999999998 87 7899999999999998888776555432 23367
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 410 VIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 410 ~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
.|++.+.| +.++..+++..+... +...|+.+++.+.
T Consensus 210 ~IA~~A~G-s~RdALsLLdQaia~----~~~~It~~~V~~~ 245 (700)
T PRK12323 210 LLAQAAQG-SMRDALSLTDQAIAY----SAGNVSEEAVRGM 245 (700)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHh----ccCCcCHHHHHHH
Confidence 78888877 788888888776642 2345766665543
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.68 E-value=2.5e-15 Score=166.60 Aligned_cols=203 Identities=28% Similarity=0.425 Sum_probs=146.6
Q ss_pred ccCCCCCcccccccchhhHHH---HHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 005815 205 MEPNTGVTFDDVAGVDEAKQD---FQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS 281 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~---L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s 281 (676)
.++.++.+|+|++|++++... +.+++. . ..+.+++|+||||||||++|+++|+..+.+|+.+++.
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~---~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIE---A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHH---c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 345677899999999998766 555442 2 1234799999999999999999999999999999876
Q ss_pred hHHHHHhhhhhHHHHHHHHHHh----hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEE
Q 005815 282 EFIEMFVGVGASRVRDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIA 357 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIa 357 (676)
.. +.+.++.+++.+. .....||||||+|.+.. ...+.|+..++. ..+++|+
T Consensus 71 ~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~ 125 (413)
T PRK13342 71 TS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIG 125 (413)
T ss_pred cc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEE
Confidence 42 2234566666653 23568999999999842 233456666542 4567776
Q ss_pred ecC--CcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC-----CCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005815 358 ATN--RPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK-----KLDKDVSLSVIATRTPGFSGADLANLMNEA 430 (676)
Q Consensus 358 aTN--~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~-----~l~~d~dl~~La~~t~G~sgadL~~lv~~A 430 (676)
+|+ ....+++++++ |+ ..+.+++|+.++...+++..+... .+++ ..+..+++.+.| +.+.+.+++..+
T Consensus 126 att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~-~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 126 ATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDD-EALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred eCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 653 34578899998 88 789999999999999998876542 2332 336778888755 666676777666
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 431 AILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 431 ~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
... ...|+.+++.+++...
T Consensus 201 ~~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 201 ALG-----VDSITLELLEEALQKR 219 (413)
T ss_pred HHc-----cCCCCHHHHHHHHhhh
Confidence 543 4579999999998764
No 66
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.68 E-value=2.9e-15 Score=160.96 Aligned_cols=214 Identities=20% Similarity=0.283 Sum_probs=143.0
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CCEE
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 276 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~p~i 276 (676)
.+|.+++.+.+|++++|++++++.|.+.+.. ....+++|+||||||||++|+++++++. .+++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 4788999999999999999999988876641 1123699999999999999999999873 4678
Q ss_pred EEechhHHHHH-------------hhh-------hhHHHHHHHHHHhh-----CCCeEEEEcCCccccccCCCCCCCCCh
Q 005815 277 SLSGSEFIEMF-------------VGV-------GASRVRDLFNKAKA-----NSPCLVFIDEIDAVGRQRGTGIGGGND 331 (676)
Q Consensus 277 ~is~s~~~~~~-------------~g~-------~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~ 331 (676)
+++++++.... .+. ....++.+.+.... ..+.+|+|||+|.+. .
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~ 139 (337)
T PRK12402 71 EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------E 139 (337)
T ss_pred EechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------H
Confidence 88888764321 011 01223333333222 234699999999883 1
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHH
Q 005815 332 EREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSV 410 (676)
Q Consensus 332 ~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~ 410 (676)
.. .+.|...++.... ...+|.+++.+..+.+.+.+ |+ ..+.+.+|+.++...+++..+.+.++. ++..+..
T Consensus 140 ~~---~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~ 211 (337)
T PRK12402 140 DA---QQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211 (337)
T ss_pred HH---HHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 22 2344444444333 23455555556667777776 76 578999999999999999887765543 3444788
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 005815 411 IATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSID 452 (676)
Q Consensus 411 La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~ 452 (676)
++..+.| |++.+++.....+. +...||.+++++++.
T Consensus 212 l~~~~~g----dlr~l~~~l~~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 212 IAYYAGG----DLRKAILTLQTAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHcCC----CHHHHHHHHHHHHH--cCCCCCHHHHHHHhC
Confidence 8887743 45555555554442 234799999987653
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.2e-15 Score=164.26 Aligned_cols=213 Identities=22% Similarity=0.262 Sum_probs=149.1
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEE------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------ 277 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~------ 277 (676)
..+++++.+|+||+|++.+++.+++.+.. .+.|..+||+||||+|||++|+++|+++.+....
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 35678899999999999999988776642 2356679999999999999999999988642100
Q ss_pred --EechhHHHH----------HhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHH
Q 005815 278 --LSGSEFIEM----------FVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLL 341 (676)
Q Consensus 278 --is~s~~~~~----------~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL 341 (676)
.+|.++... ........++.+.+.+.. ....|+||||+|.+. ....+.||
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLL 140 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALL 140 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHH
Confidence 011111100 000122345666655432 234699999999983 23567788
Q ss_pred HHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 005815 342 TEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSG 420 (676)
Q Consensus 342 ~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sg 420 (676)
..++... ..+.+|.+|+.++.+.+.+.+ |+ ..+.+++|+.++..++++..++..+.. ++..+..++..+.| +.
T Consensus 141 k~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 8887543 356677777778888888887 87 688999999999999999887765532 33447778888876 67
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 421 ADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 421 adL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+++.+++..+... +...|+.+++.+++
T Consensus 215 R~al~~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 215 RDALNLLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 7777777766533 45679999887775
No 68
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=2.6e-15 Score=167.41 Aligned_cols=244 Identities=16% Similarity=0.255 Sum_probs=158.8
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEech
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSGS 281 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~s 281 (676)
-.+..+|++++.-+.-......+.....++. ...+++||||||+|||+|++++++++ +..++++++.
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 3567899998733333333333333332221 13469999999999999999999986 4678999999
Q ss_pred hHHHHHhhhhh-HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 282 EFIEMFVGVGA-SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 282 ~~~~~~~g~~~-~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
+|...+..... ..+.. |.......+.+|+|||++.+.++. ..+ ..|+..++.+......+||++.+
T Consensus 170 ~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~---------~~q---~elf~~~n~l~~~~k~iIitsd~ 236 (440)
T PRK14088 170 KFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT---------GVQ---TELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH---------HHH---HHHHHHHHHHHHcCCeEEEECCC
Confidence 98876543321 12222 333223457899999999985321 112 22222333222334456666666
Q ss_pred Cccc---ccccccCCCccc--eEEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 005815 361 RPEI---LDSALHRPGRFD--RQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAIL 433 (676)
Q Consensus 361 ~~~~---Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~ 433 (676)
.|.. +++.+.+ ||. ..+.+.+||.+.|.+|++..+.... +++++ +..|++...| +.++|+.+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 7665 4566777 774 4888999999999999998886544 43443 7888888876 789999999988777
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHcCcCCCccccccchhhhHHHHHHHHHHHH
Q 005815 434 AGRRGKANITLKEIDDSIDRIVAGMEGTKMTDGKNKILVAYHEIGHAVCAT 484 (676)
Q Consensus 434 A~r~~~~~It~~di~~Ai~~v~~g~~~~~~~~~~~~~~~A~hEaghal~a~ 484 (676)
+...+ ..||.+.+.+++..++.... .+..+..+++=.+|+.+
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~~~~~--------~~~~i~~~~I~~~V~~~ 354 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFIKPNR--------VKAMDPIDELIEIVAKV 354 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHhcccc--------ccCCCCHHHHHHHHHHH
Confidence 76655 56999999999887643211 11124455566666664
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.6e-15 Score=172.09 Aligned_cols=206 Identities=17% Similarity=0.283 Sum_probs=150.9
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 273 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~----------- 273 (676)
.+++++.+|+||+|++.+++.|...+. ..+.+..+||+||+|+|||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 457888999999999999998887664 2245678999999999999999999999865
Q ss_pred -------------CEEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHH
Q 005815 274 -------------PFFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQT 336 (676)
Q Consensus 274 -------------p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~ 336 (676)
.++.+++++ ..+...+|++...+.. ....|+||||+|.+. ...
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A 134 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THS 134 (702)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHH
Confidence 233333321 1123456666665432 344699999999983 235
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005815 337 LNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRT 415 (676)
Q Consensus 337 l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t 415 (676)
.+.|+..++... .++.+|.+|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+...++. .+..+..|++.+
T Consensus 135 ~NALLKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 135 FNALLKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HHHHHHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 677888887543 456777777888888888877 87 688999999999999998888765543 334478888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 416 PGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 416 ~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
.| +.+++.+++..+... +...|+.+++...+
T Consensus 210 ~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 210 QG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 76 778887887766532 45678888886653
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.3e-15 Score=169.33 Aligned_cols=218 Identities=18% Similarity=0.255 Sum_probs=157.8
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEE-----
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF----- 276 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i----- 276 (676)
..+..++++.+|+|++|++.+.+.|+..+.. .+.+.++||+||||||||++|+++|+.+++.-.
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~ 77 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT 77 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc
Confidence 3455678899999999999999988775532 245778999999999999999999999865210
Q ss_pred -------EEechhHHHH----------HhhhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHHH
Q 005815 277 -------SLSGSEFIEM----------FVGVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDEREQ 335 (676)
Q Consensus 277 -------~is~s~~~~~----------~~g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~~ 335 (676)
.-+|..+.+. ....+...++++++.+... ...|++|||+|.+. ..
T Consensus 78 ~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~ 143 (507)
T PRK06645 78 TIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KG 143 (507)
T ss_pred CcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HH
Confidence 0111111111 0012345678888776532 34699999999983 24
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005815 336 TLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR 414 (676)
Q Consensus 336 ~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~ 414 (676)
.++.|+..++.. ...+++|.+|+.++.+.+.+.+ |+ ..+.+..++.++...+++..++..+.. ++..+..|+..
T Consensus 144 a~naLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 577888888743 3457777778888899999888 77 678999999999999999988766543 33347889988
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+.| +.+++.+++..+...+... ...||.+++.+.+
T Consensus 219 s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 877 7889889888887665322 3468888887654
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=99.66 E-value=2.3e-15 Score=161.45 Aligned_cols=205 Identities=20% Similarity=0.213 Sum_probs=139.6
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CCEEE
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS 277 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~p~i~ 277 (676)
.|.+++++.+|+|++|++++.+.|+.++.. . .. .++||+||||||||++|+++|+++. ..++.
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~---~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD---G--------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc---C--------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 377899999999999999999888776542 1 12 2599999999999999999999972 24666
Q ss_pred EechhHHHHHhhhhhHHHHHHHHH---Hh----hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 278 LSGSEFIEMFVGVGASRVRDLFNK---AK----ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 278 is~s~~~~~~~g~~~~~vr~lF~~---A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
++.++... ...+++.... .. ...+.|++|||+|.+.. . ..+.|+..|+.+..
T Consensus 70 ln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~---aq~aL~~~lE~~~~- 128 (319)
T PLN03025 70 LNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------G---AQQALRRTMEIYSN- 128 (319)
T ss_pred eccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------H---HHHHHHHHHhcccC-
Confidence 77665321 1223333322 11 12357999999999941 1 23455565654433
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNE 429 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~ 429 (676)
...+|.+||.+..+.+++++ |+ ..+.|++|+.++....++..++..++. ++..+..++..+.| |++.+++.
T Consensus 129 -~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~ 200 (319)
T PLN03025 129 -TTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNN 200 (319)
T ss_pred -CceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 24566678888888888888 76 588999999999999998887765543 33347888877654 55555554
Q ss_pred HHHHHHHcCCCCCCHHHHHHH
Q 005815 430 AAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 430 A~~~A~r~~~~~It~~di~~A 450 (676)
....+ .+...|+.+++.+.
T Consensus 201 Lq~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 201 LQATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHHH--hcCCCCCHHHHHHH
Confidence 44222 23456888887644
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2e-15 Score=170.77 Aligned_cols=208 Identities=16% Similarity=0.248 Sum_probs=152.0
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------- 274 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------- 274 (676)
.+.+++++.+|+||+|++.+++.|.+.+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 345688999999999999999988877742 2456679999999999999999999988652
Q ss_pred ----------------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHH
Q 005815 275 ----------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDERE 334 (676)
Q Consensus 275 ----------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~ 334 (676)
++.++.++ ..+.+.+|++.+.+.. ....|+||||+|.+. .
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~ 133 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------G 133 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------H
Confidence 34444321 1233456776665432 233699999999994 2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005815 335 QTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIAT 413 (676)
Q Consensus 335 ~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~ 413 (676)
...|.||..|+... ..+++|.+|+.+..+.+.+++ |+ ..++|..++..+-.+.++..+...++. .+..+..+++
T Consensus 134 ~a~naLLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 134 HSFNALLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHHHHHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35688888888654 346777777888888888887 77 678899888888888888777665543 3334778888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 414 RTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 414 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
.+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 209 ~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 209 AANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 8766 788888888777533 34578888776553
No 73
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.65 E-value=4.3e-15 Score=158.70 Aligned_cols=209 Identities=22% Similarity=0.342 Sum_probs=139.6
Q ss_pred ccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 005815 201 AKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 (676)
Q Consensus 201 ~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~ 280 (676)
.-+|.+++++.+|+|++|++++++.+...+. ....|..+||+||||+|||+++++++++.+.+++.+++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 3568899999999999999999998887664 12346667789999999999999999999999999998
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHh-hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 281 SEFIEMFVGVGASRVRDLFNKAK-ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 281 s~~~~~~~g~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
++ .. .......+........ ...+++|+|||+|.+. ....+..+..+ ++... .++.+|.+|
T Consensus 77 ~~-~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~---le~~~--~~~~~Ilt~ 138 (316)
T PHA02544 77 SD-CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSF---MEAYS--KNCSFIITA 138 (316)
T ss_pred Cc-cc--HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHH---HHhcC--CCceEEEEc
Confidence 76 21 1111111222111111 1356899999999883 11223334433 44332 456788899
Q ss_pred CCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcC---------CCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005815 360 NRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN---------KKLDKDVSLSVIATRTPGFSGADLANLMNEA 430 (676)
Q Consensus 360 N~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~---------~~l~~d~dl~~La~~t~G~sgadL~~lv~~A 430 (676)
|.++.+++++.+ || ..+.++.|+.+++.++++.+... ..+.++ .+..+++...| |++.+++..
T Consensus 139 n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l 210 (316)
T PHA02544 139 NNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINEL 210 (316)
T ss_pred CChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHH
Confidence 999999999998 88 47899999999998776644321 222222 25677766554 455555555
Q ss_pred HHHHHHcCCCCCCHHHHHH
Q 005815 431 AILAGRRGKANITLKEIDD 449 (676)
Q Consensus 431 ~~~A~r~~~~~It~~di~~ 449 (676)
...+. ...++.+++..
T Consensus 211 ~~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 211 QRYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHHc---cCCCCHHHHHH
Confidence 54432 24577766544
No 74
>PRK06893 DNA replication initiation factor; Validated
Probab=99.65 E-value=9.1e-15 Score=149.56 Aligned_cols=211 Identities=14% Similarity=0.154 Sum_probs=136.4
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSE 282 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~ 282 (676)
...+..+|++++|.+... .+..+... +.. .....++||||||||||+|++|+|+++ +....+++..+
T Consensus 8 ~~~~~~~fd~f~~~~~~~-~~~~~~~~------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL-LLDSLRKN------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCCcccccccccCChHH-HHHHHHHH------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 345678999999876532 11111111 111 112358999999999999999999986 45566666643
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCC-eEEEEecCC
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSG-VIVIAATNR 361 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~-ViVIaaTN~ 361 (676)
.... ....++.. ....+|+|||++.+.. ....+..+..++..+ ..+++ ++|++++..
T Consensus 78 ~~~~--------~~~~~~~~--~~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~---~~~~~~illits~~~ 135 (229)
T PRK06893 78 SQYF--------SPAVLENL--EQQDLVCLDDLQAVIG---------NEEWELAIFDLFNRI---KEQGKTLLLISADCS 135 (229)
T ss_pred hhhh--------hHHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHH---HHcCCcEEEEeCCCC
Confidence 2211 11223332 2447999999999842 223344455555544 22333 455666667
Q ss_pred ccccc---ccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCC--CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005815 362 PEILD---SALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKL--DKDVSLSVIATRTPGFSGADLANLMNEAAILAGR 436 (676)
Q Consensus 362 ~~~Ld---~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l--~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r 436 (676)
|..++ +.+.+..+++..+.++.||.++|.+|++..+....+ ++++ +..|+++.+| +.+.+.++++.....+..
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 213 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDKASLQ 213 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHHh
Confidence 77654 788884444568999999999999999988765443 3443 7888888876 788888888876544443
Q ss_pred cCCCCCCHHHHHHHH
Q 005815 437 RGKANITLKEIDDSI 451 (676)
Q Consensus 437 ~~~~~It~~di~~Ai 451 (676)
+ ...||...+++++
T Consensus 214 ~-~~~it~~~v~~~L 227 (229)
T PRK06893 214 A-QRKLTIPFVKEIL 227 (229)
T ss_pred c-CCCCCHHHHHHHh
Confidence 3 3479999888765
No 75
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.65 E-value=1.1e-14 Score=158.44 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=150.5
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------CCEEEEec
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSLSG 280 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~---------~p~i~is~ 280 (676)
....++++|.++..+.|...+..... ...+.+++|+||||||||++++++++++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34456899999988877776654221 12356799999999999999999998652 57888887
Q ss_pred hhHH----------HHHh--hh--------hhHHHHHHHHHHh-hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHH
Q 005815 281 SEFI----------EMFV--GV--------GASRVRDLFNKAK-ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQ 339 (676)
Q Consensus 281 s~~~----------~~~~--g~--------~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~ 339 (676)
.... +... +. ..+....+++... ...+.||+|||+|.+.... +..+.+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~ 151 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQ 151 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHh
Confidence 5432 1111 11 0122344444443 3457899999999996211 125566
Q ss_pred HHHHhcc-CCCCCCeEEEEecCCcc---cccccccCCCccc-eEEecCCCCHHHHHHHHHHHhcC----CCCCccc-c-H
Q 005815 340 LLTEMDG-FTGNSGVIVIAATNRPE---ILDSALHRPGRFD-RQVSVGLPDIRGREQILKVHSNN----KKLDKDV-S-L 408 (676)
Q Consensus 340 LL~~ld~-~~~~~~ViVIaaTN~~~---~Ld~aLlrpGRfd-~~I~v~~Pd~~~R~~IL~~~l~~----~~l~~d~-d-l 408 (676)
|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++.. ..+++++ + +
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 229 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLC 229 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHH
Confidence 6554221 12235788999999876 47777777 775 67999999999999999988752 1122222 1 2
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 409 SVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 409 ~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
..++..+.| ..+.+-++|+.|...|..++...|+.+|+..|++.+
T Consensus 230 ~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 230 AALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 334445556 455666789999999988888999999999998876
No 76
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=8e-15 Score=166.39 Aligned_cols=223 Identities=20% Similarity=0.300 Sum_probs=150.3
Q ss_pred CCCCCcccccccchhh---HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEE
Q 005815 207 PNTGVTFDDVAGVDEA---KQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSL 278 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~---k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~i 278 (676)
-+...+|++++.-+.- ...+..++ .++. .....++|||++|+|||+|++|+++++ +..++++
T Consensus 281 L~~~~TFDnFvvG~sN~~A~aaa~ava---e~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi 350 (617)
T PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVA---EAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV 350 (617)
T ss_pred CCCCCCHhhhcCCCccHHHHHHHHHHH---hCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 3567899998743332 22223322 2221 112349999999999999999999986 5788999
Q ss_pred echhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEe
Q 005815 279 SGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAA 358 (676)
Q Consensus 279 s~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 358 (676)
++.+|.+.+.........+.|.. +...+++|+||||+.+..+. ..+..+..+++.+ ..++.-+||++
T Consensus 351 taeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gke---------~tqeeLF~l~N~l---~e~gk~IIITS 417 (617)
T PRK14086 351 SSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDKE---------STQEEFFHTFNTL---HNANKQIVLSS 417 (617)
T ss_pred eHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCCH---------HHHHHHHHHHHHH---HhcCCCEEEec
Confidence 99999877765433333334443 23456899999999995322 2233333344433 22233355544
Q ss_pred cCCcc---cccccccCCCccce--EEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005815 359 TNRPE---ILDSALHRPGRFDR--QVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAI 432 (676)
Q Consensus 359 TN~~~---~Ld~aLlrpGRfd~--~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~ 432 (676)
...|. .+++.|.+ ||.. .+.+..||.+.|.+||+.++....+. ++.-+..|+....+ +.++|+.+++....
T Consensus 418 d~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a 494 (617)
T PRK14086 418 DRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTA 494 (617)
T ss_pred CCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 44443 46788888 8854 77999999999999999998776654 22237788888764 78999999998877
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHc
Q 005815 433 LAGRRGKANITLKEIDDSIDRIVA 456 (676)
Q Consensus 433 ~A~r~~~~~It~~di~~Ai~~v~~ 456 (676)
.+...+ ..||.+.+++.+..++.
T Consensus 495 ~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 495 FASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHhhC-CCCCHHHHHHHHHHhhc
Confidence 776554 66999999998876643
No 77
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.4e-15 Score=165.25 Aligned_cols=205 Identities=20% Similarity=0.295 Sum_probs=153.5
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC------------
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 273 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~------------ 273 (676)
.++++.+|+||+|++.+++.|++.+.. .++|.++||+||+|+|||++|+.+|..+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 467889999999999999988765532 255778999999999999999999986532
Q ss_pred ------------CEEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHH
Q 005815 274 ------------PFFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTL 337 (676)
Q Consensus 274 ------------p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l 337 (676)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.+. ...+
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~ 133 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAF 133 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHH
Confidence 234444432 1233557777776643 234699999999983 2367
Q ss_pred HHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCC
Q 005815 338 NQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTP 416 (676)
Q Consensus 338 ~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~ 416 (676)
|.|+..++... ..+++|.+|+.++.+.+.+++ |+ ..+.+.+++.++..+.+...+...+.. ++..+..|++.+.
T Consensus 134 NaLLK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 134 NALLKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS 208 (491)
T ss_pred HHHHHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88999988644 456777777888889888888 77 678999999999999998887765543 3344788888887
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 417 GFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 417 G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
| +.+++.+++..+...+ ...||.+++.+.+
T Consensus 209 G-slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 209 G-SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred C-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 6 7888888888776543 2478988887653
No 78
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=3.9e-15 Score=170.42 Aligned_cols=213 Identities=19% Similarity=0.265 Sum_probs=152.5
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCE-------E
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F 276 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~-------i 276 (676)
...++++.+|+||+|++.+++.|++.+.. .+++.++||+||+|+|||++|+++|+.++++- -
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 34678899999999999999988877652 24577899999999999999999999875531 1
Q ss_pred EE-echhHHHH----------HhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHH
Q 005815 277 SL-SGSEFIEM----------FVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLL 341 (676)
Q Consensus 277 ~i-s~s~~~~~----------~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL 341 (676)
.+ +|..+... ....+...++++++.+.. ....|+||||+|.+. ...++.||
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALL 140 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAML 140 (709)
T ss_pred ccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHH
Confidence 11 01110000 011233457777765532 234699999999883 23567888
Q ss_pred HHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 005815 342 TEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSG 420 (676)
Q Consensus 342 ~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sg 420 (676)
..|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++...+|+..+...++. .+..+..|++.+.| +.
T Consensus 141 KtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 8887543 456777788888888888876 87 678888999999999999888866543 33347888888865 78
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 421 ADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 421 adL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+++.+++..+... +...|+.+++...+
T Consensus 215 RdAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 215 RDALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8888888877654 34568888776654
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.9e-15 Score=171.92 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=147.1
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------EEE
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 277 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------~i~ 277 (676)
.+++++.+|+||+|++.+++.|++.+.. .+++..+||+||||||||++||++|+.+++. +..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 4578889999999999999988776542 1456678999999999999999999998663 111
Q ss_pred E-echhHHHHH------h----hhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHH
Q 005815 278 L-SGSEFIEMF------V----GVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 342 (676)
Q Consensus 278 i-s~s~~~~~~------~----g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~ 342 (676)
+ +|-.+.+.. + ..+...+|.+.+.+.. ....|+||||+|.|. ...+|.||.
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLK 141 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLK 141 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHH
Confidence 1 111111100 0 0122345666554432 234699999999993 347788999
Q ss_pred HhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005815 343 EMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGA 421 (676)
Q Consensus 343 ~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sga 421 (676)
.|+... .++++|.+|+.+..|.+.+++ |+ .++.|.+++.++..++|+..+....+. .+..+..|+..+.| +.+
T Consensus 142 tLEEPP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEEPP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhccC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 998643 456777778888888888888 87 789999999999999998887654433 23347888888877 678
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 005815 422 DLANLMNEAAILAGRRGKANITLKEIDD 449 (676)
Q Consensus 422 dL~~lv~~A~~~A~r~~~~~It~~di~~ 449 (676)
++.+++..+... +...++.+++.+
T Consensus 216 ~ALnLLdQala~----~~~~It~~~V~~ 239 (944)
T PRK14949 216 DALSLTDQAIAF----GGGQVMLTQVQT 239 (944)
T ss_pred HHHHHHHHHHHh----cCCcccHHHHHH
Confidence 888888877632 234566555443
No 80
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6.8e-15 Score=168.92 Aligned_cols=205 Identities=19% Similarity=0.305 Sum_probs=148.7
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 274 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------- 274 (676)
.+++++.+|+||+|++.+++.|.+.+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 4567889999999999999988876652 2356679999999999999999999998662
Q ss_pred --------------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHH
Q 005815 275 --------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQT 336 (676)
Q Consensus 275 --------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~ 336 (676)
++.++.++ ..+.+.+|++.+.+.. ....|+||||+|.|. ...
T Consensus 76 C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a 135 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHS 135 (647)
T ss_pred CHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHH
Confidence 22222221 0122446666555432 334699999999994 346
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005815 337 LNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRT 415 (676)
Q Consensus 337 l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t 415 (676)
.|.||..|+... ..+++|.+|+.+..|.+.+++ |+ ..+.|..++.++-...|+..+...++. ++..+..|+..+
T Consensus 136 ~NALLKtLEEPp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s 210 (647)
T PRK07994 136 FNALLKTLEEPP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAA 210 (647)
T ss_pred HHHHHHHHHcCC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 788999988643 457777778888899989888 86 899999999999999998887654443 334477888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 416 PGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 416 ~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
.| +.++..+++..+... +...|+.+++...
T Consensus 211 ~G-s~R~Al~lldqaia~----~~~~it~~~v~~~ 240 (647)
T PRK07994 211 DG-SMRDALSLTDQAIAS----GNGQVTTDDVSAM 240 (647)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 77 678888888766532 2345666665543
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.6e-14 Score=163.15 Aligned_cols=204 Identities=21% Similarity=0.307 Sum_probs=147.3
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 274 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----------- 274 (676)
.++++.+|+||+|++.+++.|++.+.. .+.|..+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 578899999999999999998877753 2356678999999999999999999987531
Q ss_pred ------------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHH
Q 005815 275 ------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLN 338 (676)
Q Consensus 275 ------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~ 338 (676)
++.++.++ ..+...++++.+.+.. ..+.||+|||+|.+. ...++
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~n 134 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFN 134 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHH
Confidence 33343321 1123445665444432 346799999999873 24577
Q ss_pred HHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCC
Q 005815 339 QLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPG 417 (676)
Q Consensus 339 ~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G 417 (676)
.|+..++... ..+++|.+|+.+..+.+.+.+ |+ .++.|.+|+.++..+.++..+...++. ++..+..++..+.|
T Consensus 135 aLLk~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEEPP--EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHhCC--CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888887543 356777778888899999888 76 589999999999999999888765543 33347788888776
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 418 FSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 418 ~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+.+++.+++..+.. . ...||.+++.+.+
T Consensus 210 -dlR~aln~Lekl~~---~--~~~It~~~V~~~l 237 (504)
T PRK14963 210 -AMRDAESLLERLLA---L--GTPVTRKQVEEAL 237 (504)
T ss_pred -CHHHHHHHHHHHHh---c--CCCCCHHHHHHHH
Confidence 55666666665532 2 3468888877653
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.1e-14 Score=166.88 Aligned_cols=208 Identities=16% Similarity=0.254 Sum_probs=150.4
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------- 274 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------- 274 (676)
.+.+++++.+|+||+|++.+++.|.+.+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 345678899999999999999988876652 2456679999999999999999999988641
Q ss_pred ---------------------EEEEechhHHHHHhhhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCC
Q 005815 275 ---------------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGG 329 (676)
Q Consensus 275 ---------------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~ 329 (676)
++.++..+ ..+.+.+|++.+.+... .-.|++|||+|.+.
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls---------- 137 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT---------- 137 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC----------
Confidence 22222111 11234577777665432 23599999999994
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccH
Q 005815 330 NDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSL 408 (676)
Q Consensus 330 ~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl 408 (676)
....|.||..++... ..+++|.+|+.+..+.+.+++ |+ .++.|..++.++..+.++..+...++. ++..+
T Consensus 138 ----~~a~NaLLKtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL 208 (618)
T PRK14951 138 ----NTAFNAMLKTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQAL 208 (618)
T ss_pred ----HHHHHHHHHhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 235788888887533 456777777778888888887 76 789999999999999998887665543 33347
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 409 SVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 409 ~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
..|++.+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 209 ~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 209 RLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888888876 778888887666543 34568877776543
No 83
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=2.6e-14 Score=159.29 Aligned_cols=227 Identities=16% Similarity=0.240 Sum_probs=144.7
Q ss_pred CCCCCcccccc-cchh--hHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 207 PNTGVTFDDVA-GVDE--AKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 207 ~~~~~~f~dv~-G~~~--~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
-++..+|++++ |... +...++++.. .+. .......++++||||||+|||+|++++++++ +..++++++
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~---~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTK---VSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHh---ccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 35678999986 5332 2223333221 111 0011123569999999999999999999976 788999999
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 281 SEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 281 s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
.+|...+.......-...|... ...+++|+|||++.+.++. ..++.+..++..+ ...+..+|+++++
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l---~~~~k~IIlts~~ 244 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKG---------ATQEEFFHTFNSL---HTEGKLIVISSTC 244 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCCh---------hhHHHHHHHHHHH---HHCCCcEEEecCC
Confidence 8887665433221112234432 2456799999999985321 1222222333222 1223345666655
Q ss_pred Ccc---cccccccCCCccc--eEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHH--
Q 005815 361 RPE---ILDSALHRPGRFD--RQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAI-- 432 (676)
Q Consensus 361 ~~~---~Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~-- 432 (676)
.|. .+++.+.+ ||. ..+.+.+|+.++|.+|++..+...++. ++..+..++....+ +.++|.+.++..+.
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~ 321 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRV 321 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 554 46788888 885 799999999999999999988766543 22236778887765 67888888887752
Q ss_pred -HHHHcCCCCCCHHHHHHHHHHHHc
Q 005815 433 -LAGRRGKANITLKEIDDSIDRIVA 456 (676)
Q Consensus 433 -~A~r~~~~~It~~di~~Ai~~v~~ 456 (676)
.+.. ....||.+++++++.....
T Consensus 322 a~~~~-~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 322 AYKKL-SHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHh-hCCCCCHHHHHHHHHHhhh
Confidence 2222 2357999999999987643
No 84
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.62 E-value=2.4e-14 Score=145.22 Aligned_cols=206 Identities=18% Similarity=0.233 Sum_probs=136.9
Q ss_pred CCCCccccccc--chhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005815 208 NTGVTFDDVAG--VDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSE 282 (676)
Q Consensus 208 ~~~~~f~dv~G--~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~ 282 (676)
..+.+|+++++ ...+.+.+++.+. ...+..++|+||||||||++|++++.++ +.+++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 45578888873 3345554444332 1235679999999999999999999876 57899999988
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
+.... .+.+.... .+.+|+|||+|.+.. ..+....+..++..+. .....+|++++..+
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~---~~~~~iIits~~~~ 134 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVR---EAGGRLLIAGRAAP 134 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHH---HcCCeEEEECCCCh
Confidence 76432 23333322 345999999999842 1122334444444432 22233445444444
Q ss_pred cccc---ccccCCCcc--ceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005815 363 EILD---SALHRPGRF--DRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGR 436 (676)
Q Consensus 363 ~~Ld---~aLlrpGRf--d~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r 436 (676)
..++ +.+.+ |+ ..++.+++|+.+++..+++.++....+. ++..+..|++. .+.+.+++.++++++...+..
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 4432 56666 66 4789999999999999999876644432 22337888886 556999999999998877666
Q ss_pred cCCCCCCHHHHHHHH
Q 005815 437 RGKANITLKEIDDSI 451 (676)
Q Consensus 437 ~~~~~It~~di~~Ai 451 (676)
++ ..|+.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 55 579998887764
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.61 E-value=2.9e-14 Score=145.28 Aligned_cols=204 Identities=18% Similarity=0.221 Sum_probs=134.7
Q ss_pred cCCCCCccccccc--chhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 206 EPNTGVTFDDVAG--VDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 206 ~~~~~~~f~dv~G--~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
....+.+|+++++ ...+...++++.. +.....+++|+||+|||||+||+++++++ +.+++++++
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 3456688999773 3444444444332 22335679999999999999999999875 778999998
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 281 SEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 281 s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
.++.... . ......+|+|||+|.+.. ..+..+..++..+ ......++|.+++
T Consensus 79 ~~~~~~~------------~--~~~~~~~liiDdi~~l~~-----------~~~~~L~~~~~~~---~~~~~~~vl~~~~ 130 (227)
T PRK08903 79 ASPLLAF------------D--FDPEAELYAVDDVERLDD-----------AQQIALFNLFNRV---RAHGQGALLVAGP 130 (227)
T ss_pred HHhHHHH------------h--hcccCCEEEEeChhhcCc-----------hHHHHHHHHHHHH---HHcCCcEEEEeCC
Confidence 8765321 1 122356999999998831 2233344444433 3333433444444
Q ss_pred -Ccc--cccccccCCCcc--ceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 361 -RPE--ILDSALHRPGRF--DRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 361 -~~~--~Ld~aLlrpGRf--d~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
.+. .+.+.+.+ || ...+.+++|+.+++..+++.+.....+. ++..+..|++..+ -+.+++.++++.....|
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYS 207 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 332 24456665 76 4699999999999999998876544433 2223788888655 48999999999876666
Q ss_pred HHcCCCCCCHHHHHHHHH
Q 005815 435 GRRGKANITLKEIDDSID 452 (676)
Q Consensus 435 ~r~~~~~It~~di~~Ai~ 452 (676)
... +..||...+++++.
T Consensus 208 ~~~-~~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LEQ-KRPVTLPLLREMLA 224 (227)
T ss_pred HHh-CCCCCHHHHHHHHh
Confidence 444 47899999888763
No 86
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.61 E-value=3.9e-14 Score=155.82 Aligned_cols=223 Identities=19% Similarity=0.257 Sum_probs=151.4
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSGSEFI 284 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~s~~~ 284 (676)
....+.++|.++..+++...+..... ...+.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 33567789999887777766643211 1235569999999999999999999876 5788999885321
Q ss_pred ----------HHHhhh-------hhH-HHHHHHHHHh-hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc
Q 005815 285 ----------EMFVGV-------GAS-RVRDLFNKAK-ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 345 (676)
Q Consensus 285 ----------~~~~g~-------~~~-~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld 345 (676)
....+. ..+ .+..+.+... ...+.||+|||+|.+..+. ....+..|+..++
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~ 167 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHE 167 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhh
Confidence 111110 111 1222233322 2456899999999996211 1235677776665
Q ss_pred cCCCCCCeEEEEecCCcc---cccccccCCCccc-eEEecCCCCHHHHHHHHHHHhcCC----CCCccccHHHHHHhCCC
Q 005815 346 GFTGNSGVIVIAATNRPE---ILDSALHRPGRFD-RQVSVGLPDIRGREQILKVHSNNK----KLDKDVSLSVIATRTPG 417 (676)
Q Consensus 346 ~~~~~~~ViVIaaTN~~~---~Ld~aLlrpGRfd-~~I~v~~Pd~~~R~~IL~~~l~~~----~l~~d~dl~~La~~t~G 417 (676)
.... .++.+|+++|..+ .+++.+.+ ||. ..|.+++++.++..+|++.++... .+ .+..++.+++.+.+
T Consensus 168 ~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~-~~~~l~~i~~~~~~ 243 (394)
T PRK00411 168 EYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVV-DDEVLDLIADLTAR 243 (394)
T ss_pred ccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCC-CHhHHHHHHHHHHH
Confidence 5432 3688888888664 46666665 553 578999999999999999887532 22 23336677776633
Q ss_pred C--cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 418 F--SGADLANLMNEAAILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 418 ~--sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
. ..+.+-++++.|...|..++...|+.+|+..|++++
T Consensus 244 ~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 244 EHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 2 345556888999999988899999999999999877
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.61 E-value=3.2e-14 Score=154.21 Aligned_cols=208 Identities=22% Similarity=0.365 Sum_probs=149.6
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------- 274 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------- 274 (676)
.+.+++++.+|+|++|++.+++.|.+.+.. ...++.+||+||||+|||++|++++..+.++
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456778889999999999999988876642 2346679999999999999999999987432
Q ss_pred ----------------EEEEechhHHHHHhhhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHH
Q 005815 275 ----------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDERE 334 (676)
Q Consensus 275 ----------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~ 334 (676)
++.+++.+ ......++.+++.+... ...||+|||+|.+. .
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~ 131 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------K 131 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------H
Confidence 33333321 11233466777765432 23599999999883 2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005815 335 QTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIAT 413 (676)
Q Consensus 335 ~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~ 413 (676)
...+.|+..++... ..+++|.+|+.++.+.+.+.+ |+ ..+.+++|+..+..++++.+++..+.. ++..+..++.
T Consensus 132 ~~~~~Ll~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~ 206 (355)
T TIGR02397 132 SAFNALLKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIAR 206 (355)
T ss_pred HHHHHHHHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35677888887543 356777778888888888888 77 578999999999999999888766543 2334677788
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 414 RTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 414 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
.+.| +.+.+.+.++.+...+ ...|+.+++++++
T Consensus 207 ~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 207 AADG-SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred HcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 7765 6666666666655432 2459999998776
No 88
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.9e-14 Score=163.22 Aligned_cols=205 Identities=22% Similarity=0.352 Sum_probs=150.9
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 273 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~----------- 273 (676)
..++++.+|+||+|++.+++.|++.+.. .+.++.+||+||+|||||++|+.+|..+++
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3567889999999999999988877653 234667999999999999999999998753
Q ss_pred -------------CEEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHH
Q 005815 274 -------------PFFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQT 336 (676)
Q Consensus 274 -------------p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~ 336 (676)
.++.++++. +.+...+|++.+.+.. ....|++|||+|.+. ...
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a 135 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGA 135 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHH
Confidence 223333221 1234567777777653 234699999999983 236
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005815 337 LNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRT 415 (676)
Q Consensus 337 l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t 415 (676)
+|.|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..+.|.+|+.++...+++..+...++. ++..+..++..+
T Consensus 136 ~naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 136 FNALLKTLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred HHHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 78888888754 3456777777888999999888 87 478899999999999998888765543 233477888887
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 416 PGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 416 ~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
.| +.+++.+++..+...+ ...|+.+++...
T Consensus 211 ~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 211 EG-GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 76 7788888887776542 456888776654
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.60 E-value=2e-14 Score=167.94 Aligned_cols=212 Identities=23% Similarity=0.280 Sum_probs=145.2
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
+.++.++.+|+|++|++........+...+... ...+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 455677899999999999886543333333321 12469999999999999999999999999998887532
Q ss_pred HHHHhhhhhHHHHHHHHHHh-----hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEe
Q 005815 284 IEMFVGVGASRVRDLFNKAK-----ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAA 358 (676)
Q Consensus 284 ~~~~~g~~~~~vr~lF~~A~-----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 358 (676)
. .+.++..+..+. .....+|||||+|.+.. ...+.|+..++ +..+++|++
T Consensus 89 ~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE----~g~IiLI~a 143 (725)
T PRK13341 89 G-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVE----NGTITLIGA 143 (725)
T ss_pred h-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhc----CceEEEEEe
Confidence 1 122344444331 13457999999999842 12345555554 345777776
Q ss_pred cCC--cccccccccCCCccceEEecCCCCHHHHHHHHHHHhc-------CC--CCCccccHHHHHHhCCCCcHHHHHHHH
Q 005815 359 TNR--PEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN-------NK--KLDKDVSLSVIATRTPGFSGADLANLM 427 (676)
Q Consensus 359 TN~--~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~-------~~--~l~~d~dl~~La~~t~G~sgadL~~lv 427 (676)
|+. ...+++++++ |+ ..+.+++++.+++..+++..+. .. .++++ .+..|++...| +.+++.+++
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~de-aL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPE-AEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHH-HHHHHHHhCCC-CHHHHHHHH
Confidence 643 3468889988 75 5789999999999999998876 22 23333 37888888865 678888888
Q ss_pred HHHHHHHHHcCC--CCCCHHHHHHHHHHH
Q 005815 428 NEAAILAGRRGK--ANITLKEIDDSIDRI 454 (676)
Q Consensus 428 ~~A~~~A~r~~~--~~It~~di~~Ai~~v 454 (676)
+.+...+...+. ..|+.+++++++.+.
T Consensus 219 e~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 219 ELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 877644322222 238888888887663
No 90
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.8e-14 Score=163.79 Aligned_cols=207 Identities=17% Similarity=0.273 Sum_probs=149.3
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 274 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 274 (676)
..+++++.+|+||+|++.+++.|.+.+.. .+.+..+||+||||+|||++|+++|+.+++.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34567889999999999999988876652 2346679999999999999999999988652
Q ss_pred ---------------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHH
Q 005815 275 ---------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQ 335 (676)
Q Consensus 275 ---------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~ 335 (676)
++.++.+. ..+...+|++.+.+.. ....|+||||+|.+. ..
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~ 134 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KS 134 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HH
Confidence 11121110 1223457777776643 224699999999983 23
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005815 336 TLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR 414 (676)
Q Consensus 336 ~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~ 414 (676)
..|.||..++... ..+++|.+|+.++.+.+.+++ |+ ..+.|..++.++-.+.+...+...++. ++..+..+++.
T Consensus 135 a~naLLK~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~ 209 (527)
T PRK14969 135 AFNAMLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA 209 (527)
T ss_pred HHHHHHHHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5788999888643 456777777778888877777 76 789999999999988888877655443 33346778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+.| +.+++.+++..+... +...|+.+++...+
T Consensus 210 s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 210 AAG-SMRDALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 765 678888888777543 35668887776554
No 91
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.5e-14 Score=163.01 Aligned_cols=207 Identities=20% Similarity=0.288 Sum_probs=146.2
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 274 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 274 (676)
+.+++++.+|+||+|++.+++.|.+.+.. .+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 45678899999999999999988877642 2345679999999999999999999988652
Q ss_pred ---------------EEEEechhHHHHHhhhhhHHHHHHHHHHh----hCCCeEEEEcCCccccccCCCCCCCCChHHHH
Q 005815 275 ---------------FFSLSGSEFIEMFVGVGASRVRDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQ 335 (676)
Q Consensus 275 ---------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~ 335 (676)
++.+++.. ..+...++.+.+.+. .....||||||+|.+. ..
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~ 134 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------RE 134 (624)
T ss_pred ccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HH
Confidence 33343321 011223444332222 2334699999999993 23
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005815 336 TLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR 414 (676)
Q Consensus 336 ~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~ 414 (676)
.++.|+..|+... ..+++|.+||.++.+.+.+++ |+ .++.|..++.++...+|+..+....+. ++..+..+++.
T Consensus 135 a~naLLk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 135 AFNALLKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HHHHHHHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5688888887533 457888888888888888887 87 578999999999999998877655532 33347788887
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+.| +.+++.+++..+. ..+...|+.+++..++
T Consensus 210 s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 210 AAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred cCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 765 5566666666542 2345579988877665
No 92
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=8.1e-14 Score=155.76 Aligned_cols=190 Identities=17% Similarity=0.295 Sum_probs=133.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhHHHHHhhhhhH---HHHHHHHHHhhCCCeEEEEcCCcccc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSGSEFIEMFVGVGAS---RVRDLFNKAKANSPCLVFIDEIDAVG 319 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~s~~~~~~~g~~~~---~vr~lF~~A~~~~P~ILfIDEID~l~ 319 (676)
.+++|||++|+|||+|++|+++++ +..++++++.+|...+...... .+....+. ...+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 469999999999999999999964 5788999999998776543222 12222222 2356799999999985
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc---ccccccCCCccc--eEEecCCCCHHHHHHHHH
Q 005815 320 RQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI---LDSALHRPGRFD--RQVSVGLPDIRGREQILK 394 (676)
Q Consensus 320 ~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~---Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~ 394 (676)
.+ +..+..+..++..+ ......+|+++...|.. +++.|.+ ||. ..+.+.+|+.++|.+|++
T Consensus 220 ~k---------~~~~e~lf~l~N~~---~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YK---------EKTNEIFFTIFNNF---IENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CC---------HHHHHHHHHHHHHH---HHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 22 22333444444443 22333455555555544 5677877 885 488899999999999999
Q ss_pred HHhcCCCC---CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHH
Q 005815 395 VHSNNKKL---DKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG-KANITLKEIDDSIDRI 454 (676)
Q Consensus 395 ~~l~~~~l---~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~-~~~It~~di~~Ai~~v 454 (676)
..+...++ -++..+..|+....| +.+.+.++++.+...+.... ...||.+.+++++..+
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 99876442 123337888888886 88999999999986665542 3679999999988765
No 93
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.6e-14 Score=160.72 Aligned_cols=206 Identities=20% Similarity=0.292 Sum_probs=145.3
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC----------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV---------- 273 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~---------- 273 (676)
+.+++++.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 34577889999999999999988766642 134667999999999999999999998754
Q ss_pred --------------CEEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHH
Q 005815 274 --------------PFFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQ 335 (676)
Q Consensus 274 --------------p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~ 335 (676)
.++.++... ..+...++.+.+.+.. ....|+||||+|.+. ..
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~ 134 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQ 134 (546)
T ss_pred ccHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HH
Confidence 222222211 0122345555554432 234699999999983 23
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005815 336 TLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR 414 (676)
Q Consensus 336 ~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~ 414 (676)
..+.||..|+... ..+++|.+|+.+..+.+.+++ |+ ..++|..++.++....++..+...++. .+..+..++..
T Consensus 135 a~naLLK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~ 209 (546)
T PRK14957 135 SFNALLKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYH 209 (546)
T ss_pred HHHHHHHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6678888887543 446667666778888878877 77 799999999999888888877655443 33346778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
+.| +.+++.+++..+.... + ..|+.++++++
T Consensus 210 s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 210 AKG-SLRDALSLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred cCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 765 6777777777766432 2 56888777764
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.59 E-value=1e-13 Score=142.44 Aligned_cols=207 Identities=16% Similarity=0.166 Sum_probs=135.7
Q ss_pred cCCCCCcccccc-c-chhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 206 EPNTGVTFDDVA-G-VDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 206 ~~~~~~~f~dv~-G-~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
..++..+|++++ | +..+...++++.. .+ .+..++||||||||||+|++++++++ +..+.+++.
T Consensus 14 ~~~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 14 YLPDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 345667899987 4 3444444443321 11 12469999999999999999999876 455667776
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCC-eEEEEec
Q 005815 281 SEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSG-VIVIAAT 359 (676)
Q Consensus 281 s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~-ViVIaaT 359 (676)
.++... ..++++.... ..+|+|||++.+.. ....+..+..++..+- .+++ .++++++
T Consensus 82 ~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~---e~g~~~li~ts~ 139 (235)
T PRK08084 82 DKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRIL---ESGRTRLLITGD 139 (235)
T ss_pred HHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHH---HcCCCeEEEeCC
Confidence 654321 1122222222 25999999999842 2233444444444432 2233 3556666
Q ss_pred CCccc---ccccccCCCccc--eEEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005815 360 NRPEI---LDSALHRPGRFD--RQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAI 432 (676)
Q Consensus 360 N~~~~---Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t~G~sgadL~~lv~~A~~ 432 (676)
+.|.. +.|.|.+ |+. .++.+.+|+.+++.++++.++...+ +++++ ++.|++..+| +.+.+.++++....
T Consensus 140 ~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~ 215 (235)
T PRK08084 140 RPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDR 215 (235)
T ss_pred CChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 66665 5688888 886 6999999999999999988666544 33443 7888888886 78899999888654
Q ss_pred HHHHcCCCCCCHHHHHHHH
Q 005815 433 LAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 433 ~A~r~~~~~It~~di~~Ai 451 (676)
.+.. .+..||.+.+++++
T Consensus 216 ~~l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 216 ASIT-AQRKLTIPFVKEIL 233 (235)
T ss_pred HHHh-cCCCCCHHHHHHHH
Confidence 4433 34569998888775
No 95
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.58 E-value=4.4e-14 Score=168.64 Aligned_cols=218 Identities=23% Similarity=0.315 Sum_probs=152.4
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSL 278 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~i 278 (676)
.+-++++++|.++. +++++..+... ...+++|+||||||||++++.+|..+ +..++.+
T Consensus 182 r~~~ld~~iGr~~e---i~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDE---IRQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHH---HHHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 45679999999985 55555544332 13469999999999999999999876 2457788
Q ss_pred echhHHH--HHhhhhhHHHHHHHHHHhh-CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 279 SGSEFIE--MFVGVGASRVRDLFNKAKA-NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 279 s~s~~~~--~~~g~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
+.+.+.. .+.|..+++++.+|+.++. ..++||||||||.+.+.++.. ++.+ .-|-|+..+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHh----hCCCeEE
Confidence 8877653 5778888999999999865 468999999999997654321 1111 223333333 3567999
Q ss_pred EEecCCccc-----ccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC----CC-ccccHHHHHHhCCCCc-----H
Q 005815 356 IAATNRPEI-----LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK----LD-KDVSLSVIATRTPGFS-----G 420 (676)
Q Consensus 356 IaaTN~~~~-----Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~----l~-~d~dl~~La~~t~G~s-----g 420 (676)
|+||+..+. +|++|.| ||. .|.++.|+.+++.+||+.+.+... +. .+..+..++..+.+|- +
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LP 396 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLP 396 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCc
Confidence 999997543 8999999 994 899999999999999876554321 11 3444777888777664 3
Q ss_pred HHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHH
Q 005815 421 ADLANLMNEAAILAGR-RGKANITLKEIDDSI 451 (676)
Q Consensus 421 adL~~lv~~A~~~A~r-~~~~~It~~di~~Ai 451 (676)
..--.++.+|+..... +....+..++++..+
T Consensus 397 DKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 397 DKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 3445677887655443 334455555555444
No 96
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=6.1e-14 Score=162.05 Aligned_cols=215 Identities=25% Similarity=0.335 Sum_probs=152.8
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEE---EE
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SL 278 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i---~i 278 (676)
..+..++++.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|..+.++-. .-
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~ 74 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE 74 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC
Confidence 3456788999999999999999988877642 245677999999999999999999998765311 00
Q ss_pred echhHHH---H----H-----hhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHH
Q 005815 279 SGSEFIE---M----F-----VGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 342 (676)
Q Consensus 279 s~s~~~~---~----~-----~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~ 342 (676)
.|..... . + ...+...+|.+.+.+.. ....|++|||+|.+. ....+.||.
T Consensus 75 pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLK 140 (725)
T PRK07133 75 PCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLK 140 (725)
T ss_pred chhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHH
Confidence 1111110 0 0 00123457777776653 234699999999983 236788898
Q ss_pred HhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005815 343 EMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGA 421 (676)
Q Consensus 343 ~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sga 421 (676)
.|+.. ...+++|.+|+.++.|.+.+++ |+ .++.|.+|+.++...+++..+...++. .+..+..++..+.| +.+
T Consensus 141 tLEEP--P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR 214 (725)
T PRK07133 141 TLEEP--PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLR 214 (725)
T ss_pred HhhcC--CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88864 3457778888888999999988 88 589999999999999998877655543 23336778888776 667
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 422 DLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 422 dL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
++.+++..+.... ...|+.+++.+.+
T Consensus 215 ~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 215 DALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 7777777665432 3448888887654
No 97
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.57 E-value=2.2e-14 Score=147.80 Aligned_cols=197 Identities=22% Similarity=0.253 Sum_probs=136.1
Q ss_pred cccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-----
Q 005815 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----- 274 (676)
Q Consensus 200 ~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----- 274 (676)
+...|++++++.+|+|++|++.+.+.|.+.+.. + .-..+|||||||||||+.|+++|.++..|
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~ 89 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPC 89 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCcccccc
Confidence 345588999999999999999999999887754 1 12359999999999999999999998652
Q ss_pred -EEEEechhHHHHHhhhhhHHHHHHHHHHhhC---------CC-eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHH
Q 005815 275 -FFSLSGSEFIEMFVGVGASRVRDLFNKAKAN---------SP-CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 343 (676)
Q Consensus 275 -~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~---------~P-~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ 343 (676)
+...+.|+..... ....++. -|++.... .| .|++|||.|.+. ..+.+.|...
T Consensus 90 rvl~lnaSderGis--vvr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~ 152 (346)
T KOG0989|consen 90 RVLELNASDERGIS--VVREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRT 152 (346)
T ss_pred chhhhccccccccc--chhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHH
Confidence 3344555543221 1111111 23332221 12 699999999994 3466778888
Q ss_pred hccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHHH
Q 005815 344 MDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDK-DVSLSVIATRTPGFSGAD 422 (676)
Q Consensus 344 ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~-d~dl~~La~~t~G~sgad 422 (676)
|+.+... +.+|..||+++.|...+.+ |+ ..+.|+..+.+.-...|+..+.+.++.- +..+..++..+.| +-++
T Consensus 153 mE~~s~~--trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~ 226 (346)
T KOG0989|consen 153 MEDFSRT--TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRR 226 (346)
T ss_pred Hhccccc--eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHH
Confidence 8876554 5777888999999988888 87 4778877777777778888777666542 2237788887765 3444
Q ss_pred HHHHHHHHH
Q 005815 423 LANLMNEAA 431 (676)
Q Consensus 423 L~~lv~~A~ 431 (676)
-...++.+.
T Consensus 227 Ait~Lqsls 235 (346)
T KOG0989|consen 227 AITTLQSLS 235 (346)
T ss_pred HHHHHHHhh
Confidence 444444443
No 98
>PRK08727 hypothetical protein; Validated
Probab=99.57 E-value=2.4e-13 Score=139.43 Aligned_cols=210 Identities=20% Similarity=0.251 Sum_probs=135.8
Q ss_pred cCCCCCcccccccchh-hHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 005815 206 EPNTGVTFDDVAGVDE-AKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS 281 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~-~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s 281 (676)
..++..+|+++++.+. ....+..+ .. + .....++|+||+|||||+|++|++.++ +....+++..
T Consensus 11 ~~~~~~~f~~f~~~~~n~~~~~~~~---~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDGLLAQLQAL---AA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCCcCChhhccCCcHHHHHHHHHH---Hh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 3456779999876544 22222211 11 1 123459999999999999999997765 6677888876
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
++... +.+.++... ...+|+|||+|.+..+ ...+..+..++.... .+..-+|+++...
T Consensus 79 ~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~---------~~~~~~lf~l~n~~~---~~~~~vI~ts~~~ 136 (233)
T PRK08727 79 AAAGR--------LRDALEALE--GRSLVALDGLESIAGQ---------REDEVALFDFHNRAR---AAGITLLYTARQM 136 (233)
T ss_pred Hhhhh--------HHHHHHHHh--cCCEEEEeCcccccCC---------hHHHHHHHHHHHHHH---HcCCeEEEECCCC
Confidence 65432 233444433 3469999999988522 222334444554442 2222244445456
Q ss_pred cccc---cccccCCCcc--ceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005815 362 PEIL---DSALHRPGRF--DRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 362 ~~~L---d~aLlrpGRf--d~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 435 (676)
|..+ ++.|.+ || ..++.+++|+.+++.+|++.++....+. ++..+..|++.+.| +.+.+.++++.....+.
T Consensus 137 p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~ 213 (233)
T PRK08727 137 PDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESL 213 (233)
T ss_pred hhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 6655 688888 87 5688999999999999999877544433 33337888888875 56666666776665455
Q ss_pred HcCCCCCCHHHHHHHHHH
Q 005815 436 RRGKANITLKEIDDSIDR 453 (676)
Q Consensus 436 r~~~~~It~~di~~Ai~~ 453 (676)
..+ ..||.+.+++.+..
T Consensus 214 ~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 214 AAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HhC-CCCCHHHHHHHHhh
Confidence 444 47999998887643
No 99
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=7.1e-14 Score=154.05 Aligned_cols=220 Identities=25% Similarity=0.319 Sum_probs=134.8
Q ss_pred ccc-cccchhhHHHHHHHHHH----hcChhHHhhhCCC-CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-
Q 005815 213 FDD-VAGVDEAKQDFQEIVQF----LQTPEKFAAVGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE- 285 (676)
Q Consensus 213 f~d-v~G~~~~k~~L~elv~~----l~~~~~~~~~g~~-~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~- 285 (676)
+++ |+|++++|+.+...+.. +....... -... ...++||+||||||||++|+++|..++.||+.++++.+.+
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKD-DDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccc-cccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 443 89999999999766532 11110000 0122 2357999999999999999999999999999999988764
Q ss_pred HHhhhhhHH-HHHHHHHH----hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC-----------C
Q 005815 286 MFVGVGASR-VRDLFNKA----KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-----------G 349 (676)
Q Consensus 286 ~~~g~~~~~-vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-----------~ 349 (676)
.|+|..... +..++..+ ....++||||||||.+..++.......+-..+.+++.||..||+-. .
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 466664443 34444321 2346789999999999866432211122223456677777777531 1
Q ss_pred CCCeEEEEecCCccc----------------------------------------------------ccccccCCCccce
Q 005815 350 NSGVIVIAATNRPEI----------------------------------------------------LDSALHRPGRFDR 377 (676)
Q Consensus 350 ~~~ViVIaaTN~~~~----------------------------------------------------Ld~aLlrpGRfd~ 377 (676)
..+.++|.|+|.... +.|+++ ||+|.
T Consensus 228 ~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~ 305 (412)
T PRK05342 228 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPV 305 (412)
T ss_pred CCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCe
Confidence 123455666554100 123333 59999
Q ss_pred EEecCCCCHHHHHHHHHH----Hh-------cCCCCC---ccccHHHHHHh--CCCCcHHHHHHHHHHHHHHHH
Q 005815 378 QVSVGLPDIRGREQILKV----HS-------NNKKLD---KDVSLSVIATR--TPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 378 ~I~v~~Pd~~~R~~IL~~----~l-------~~~~l~---~d~dl~~La~~--t~G~sgadL~~lv~~A~~~A~ 435 (676)
++.|.+.+.++..+|+.. .+ ....+. .+..+..|++. ..++-.+.|+.+++....-..
T Consensus 306 iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 306 VATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 999999999999998862 22 112221 22225666664 334445666666666554443
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.9e-14 Score=153.30 Aligned_cols=208 Identities=20% Similarity=0.343 Sum_probs=144.4
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCE-------
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF------- 275 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~------- 275 (676)
.+.+++++.+|+|++|++.+++.+.+.+.. ...|+++|||||||+|||++|+++|+.+..+.
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456788999999999999998887766642 23567899999999999999999999875421
Q ss_pred -----EEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc
Q 005815 276 -----FSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 346 (676)
Q Consensus 276 -----i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~ 346 (676)
+.++.. ...+...++.+++.+.. ..+.||+|||+|.+. ...++.|+..++.
T Consensus 75 ~~~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~ 134 (367)
T PRK14970 75 FSFNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEE 134 (367)
T ss_pred CCcceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhC
Confidence 112111 11123456777776543 234699999999883 1246777777765
Q ss_pred CCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHH
Q 005815 347 FTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLAN 425 (676)
Q Consensus 347 ~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~ 425 (676)
.. ...++|.+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+.+.++. ++..+..++..+.| +.+.+.+
T Consensus 135 ~~--~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~ 208 (367)
T PRK14970 135 PP--AHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALS 208 (367)
T ss_pred CC--CceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 32 345666667777888888887 76 578999999999998888877665542 33447888887664 5566666
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 426 LMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 426 lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
.++.....+ +.. ||.++++..+
T Consensus 209 ~lekl~~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 209 IFDRVVTFC---GKN-ITRQAVTENL 230 (367)
T ss_pred HHHHHHHhc---CCC-CCHHHHHHHh
Confidence 655554433 333 8888877665
No 101
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=7.7e-14 Score=160.41 Aligned_cols=205 Identities=19% Similarity=0.334 Sum_probs=149.3
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 274 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------- 274 (676)
.+++++.+|+||+|++.+++.|.+.+.. .+.+..+|||||+|+|||++|+++|+.+++.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 4577889999999999999988876642 2457789999999999999999999987542
Q ss_pred --------------EEEEechhHHHHHhhhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHHHH
Q 005815 275 --------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDEREQT 336 (676)
Q Consensus 275 --------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~ 336 (676)
++.+++.+ ..+.+.++++.+.+... ...|++|||+|.+. ...
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a 135 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNA 135 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHH
Confidence 22332221 12234567776665432 23599999999983 235
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 005815 337 LNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRT 415 (676)
Q Consensus 337 l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t 415 (676)
.|.|+..|+... ..+++|.+|+.++.|.+.+++ |+ ..+.|..++..+....+...++..++. ++..+..+++.+
T Consensus 136 ~naLLk~LEepp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 136 FNALLKTLEEPP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHHHHHHHHcCC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 788888888543 457888888888999999888 76 588999999998888888777665543 334478888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 416 PGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 416 ~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
.| +.+++.+++..+.... + ..|+.+++...
T Consensus 211 ~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 211 DG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred CC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 76 6677777777665443 2 35888887654
No 102
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=7e-14 Score=158.70 Aligned_cols=207 Identities=18% Similarity=0.289 Sum_probs=147.3
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC---------
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------- 273 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~--------- 273 (676)
.|.+++++.+|+|++|++.+++.|.+.+. ..+.++++||+||+|+|||++|+++|..+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 46678899999999999999988877553 1245678999999999999999999998743
Q ss_pred ---------------CEEEEechhHHHHHhhhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHH
Q 005815 274 ---------------PFFSLSGSEFIEMFVGVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDERE 334 (676)
Q Consensus 274 ---------------p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~ 334 (676)
.++.++++. ..+...+|.+.+.+... ...|++|||+|.+. .
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~ 133 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------T 133 (605)
T ss_pred cccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------H
Confidence 122222211 11234467666655432 23599999999983 1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005815 335 QTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIAT 413 (676)
Q Consensus 335 ~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~ 413 (676)
...+.|+..|+... ..+++|.+|+.++.+.+.+++ |+ ..+.+.+|+..+....++..+...+.. ++..+..++.
T Consensus 134 ~A~NaLLKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~ 208 (605)
T PRK05896 134 SAWNALLKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIAD 208 (605)
T ss_pred HHHHHHHHHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 24577888887543 457778888888999999988 87 488999999999998888877655432 2334778888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 414 RTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 414 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
.+.| +.+++.++++.+... .+ ..|+.+++.+.
T Consensus 209 lS~G-dlR~AlnlLekL~~y---~~-~~It~e~V~el 240 (605)
T PRK05896 209 LADG-SLRDGLSILDQLSTF---KN-SEIDIEDINKT 240 (605)
T ss_pred HcCC-cHHHHHHHHHHHHhh---cC-CCCCHHHHHHH
Confidence 8776 667777777765433 23 23888877764
No 103
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.56 E-value=1.4e-13 Score=164.61 Aligned_cols=184 Identities=23% Similarity=0.354 Sum_probs=134.1
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEe
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSLS 279 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~is 279 (676)
.-.++.++|.++..+.+.+++. . +.+++++|+||||||||++|+++|.++ +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~---r---------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG---R---------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc---c---------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4468899999987776665543 2 234579999999999999999999986 47899999
Q ss_pred chhHH--HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEE
Q 005815 280 GSEFI--EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIA 357 (676)
Q Consensus 280 ~s~~~--~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIa 357 (676)
.+.+. ..|.|..+++++.+|+.++...++||||||||.+.+..+.. +... ..+-|...+ .++.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~---~a~lLkp~l----~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAID---AANILKPAL----ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Cccc---HHHHhHHHH----hCCCcEEEE
Confidence 98887 35778888999999999988889999999999997654321 1111 222233333 356789999
Q ss_pred ecCCcc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhc------CCCCCccccHHHHHHhCCCCc
Q 005815 358 ATNRPE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN------NKKLDKDVSLSVIATRTPGFS 419 (676)
Q Consensus 358 aTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~------~~~l~~d~dl~~La~~t~G~s 419 (676)
+|+..+ ..|+++.+ ||. .|.++.|+.++...|++.... +..+.++ .+..++..+.+|.
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~de-al~~i~~ls~~yi 381 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDK-ALEAAAKLSDQYI 381 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccC
Confidence 999765 37899999 995 579999999999888875432 1223232 3566666665543
No 104
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.4e-13 Score=154.85 Aligned_cols=213 Identities=20% Similarity=0.331 Sum_probs=147.0
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------CEE
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFF 276 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------p~i 276 (676)
+..++++.+|+|++|++.+.+.|++.+.. .+.+..+|||||+|+|||++|+.+|..+++ |+-
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 45677889999999999999988776642 234567899999999999999999998753 111
Q ss_pred EE-echhHHH-----HH-----hhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHH
Q 005815 277 SL-SGSEFIE-----MF-----VGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLL 341 (676)
Q Consensus 277 ~i-s~s~~~~-----~~-----~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL 341 (676)
.+ +|..+.. .+ ...+...++.+.+.+.. ....|++|||+|.+. ....+.|+
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naLL 140 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNALL 140 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHHH
Confidence 11 1111110 00 01123345665555432 335699999999883 23467788
Q ss_pred HHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 005815 342 TEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSG 420 (676)
Q Consensus 342 ~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sg 420 (676)
..++... ..+++|.+|+.++.+.+++.+ |+ ..+.+.+|+..+...+++.+++..++. ++..+..++..+.| +.
T Consensus 141 k~LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEPP--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcCC--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 8887543 345666666777888888887 76 478999999999999999888766544 23336778887775 67
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 421 ADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 421 adL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+++.++++.+... +...||.+++.+++
T Consensus 215 r~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 215 RDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 7777777776643 24578888887764
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.6e-14 Score=158.60 Aligned_cols=206 Identities=19% Similarity=0.266 Sum_probs=147.4
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 274 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----------- 274 (676)
+++++.+|+||+|++.+++.|+..+.. .+++..+||+||+|||||++|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 678899999999999999988876642 2456679999999999999999999987642
Q ss_pred ---------------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHH
Q 005815 275 ---------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQ 335 (676)
Q Consensus 275 ---------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~ 335 (676)
++.++++. ..+...+|++.+.+.. ....|++|||+|.+. ..
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~ 133 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TA 133 (584)
T ss_pred HHHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HH
Confidence 22222211 0123445555544422 234699999999993 23
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005815 336 TLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR 414 (676)
Q Consensus 336 ~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~ 414 (676)
..|.||..|+... ..+++|.+|+.++.+.+.+++ |+ .++.|..++.++..+.+..++...+.. ++..+..+++.
T Consensus 134 A~NALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~ 208 (584)
T PRK14952 134 GFNALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA 208 (584)
T ss_pred HHHHHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6788888888543 457888888888899999988 75 789999999999998888888765543 23336667776
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+.| +.+++.+++..+...+ +...||.+++...+
T Consensus 209 s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 209 GGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred cCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 654 6778878887765432 34568877776553
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=8.1e-14 Score=164.78 Aligned_cols=206 Identities=19% Similarity=0.225 Sum_probs=146.0
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 274 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------- 274 (676)
..++++.+|+||+|++.+++.|+..+.. .++++.+||+||+|||||++|+.+|+.+.+.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 4678899999999999999988876642 2456679999999999999999999998652
Q ss_pred ----------------EEEEechhHHHHHhhhhhHHHHHHHHHHh----hCCCeEEEEcCCccccccCCCCCCCCChHHH
Q 005815 275 ----------------FFSLSGSEFIEMFVGVGASRVRDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGIGGGNDERE 334 (676)
Q Consensus 275 ----------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~ 334 (676)
|+.++... ..+...+|++.+.+. .....|+||||+|.|. .
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~ 134 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------P 134 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------H
Confidence 12222111 012234555443332 2345699999999993 3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005815 335 QTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIAT 413 (676)
Q Consensus 335 ~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~ 413 (676)
...|.||+.|+... ..+++|.+|+.++.|.+.|++ |+ .++.|..++.++..++|+..+++.++. ++..+..|++
T Consensus 135 ~a~NaLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 135 QGFNALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 46788888887654 356777777888888888888 76 688999999999999998888665553 2333677777
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 414 RTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 414 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
...| +.+++.++++..... .+...||.+++...
T Consensus 210 ~sgG-dlR~Al~eLEKLia~---~~~~~IT~e~V~al 242 (824)
T PRK07764 210 AGGG-SVRDSLSVLDQLLAG---AGPEGVTYERAVAL 242 (824)
T ss_pred HcCC-CHHHHHHHHHHHHhh---cCCCCCCHHHHHHH
Confidence 7765 677777777765522 23556888876654
No 107
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.56 E-value=5.4e-14 Score=147.04 Aligned_cols=209 Identities=26% Similarity=0.426 Sum_probs=141.6
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---EEEEechh
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSLSGSE 282 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---~i~is~s~ 282 (676)
.-++.+++|.+|+++...+ ..++.. +... ++ ..++|+||||||||+|||.++....-+ |+.++...
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~--------~i-pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN--------RI-PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcC--------CC-CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 3456789999999987655 333322 2211 12 249999999999999999999988666 77777643
Q ss_pred HHHHHhhhhhHHHHHHHHHHhh-----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEE
Q 005815 283 FIEMFVGVGASRVRDLFNKAKA-----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIA 357 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIa 357 (676)
.....+|++|+.++. ....|||||||+.+.+.+ ...||-.+ .++.|++|+
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ--------------QD~fLP~V----E~G~I~lIG 255 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ--------------QDTFLPHV----ENGDITLIG 255 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh--------------hhccccee----ccCceEEEe
Confidence 334568999999875 345799999999995332 23345443 356788898
Q ss_pred ecC-Cc-ccccccccCCCccceEEecCCCCHHHHHHHHHHHhc---C--C---CCC------ccccHHHHHHhCCCCcHH
Q 005815 358 ATN-RP-EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN---N--K---KLD------KDVSLSVIATRTPGFSGA 421 (676)
Q Consensus 358 aTN-~~-~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~---~--~---~l~------~d~dl~~La~~t~G~sga 421 (676)
+|. .| -.|..+|++ |+ +++.+.....+.-..||.+-.. + . ++. .+--++.++..+.|-..+
T Consensus 256 ATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred cccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 764 33 468889998 77 7888888888888888876432 1 1 111 122267888888887666
Q ss_pred HHHHHHHHHHHHHHHcC---CCCCCHHHHHHHHHH
Q 005815 422 DLANLMNEAAILAGRRG---KANITLKEIDDSIDR 453 (676)
Q Consensus 422 dL~~lv~~A~~~A~r~~---~~~It~~di~~Ai~~ 453 (676)
.|..|--.+.+...|.+ +..++.+|+++.+.+
T Consensus 333 aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 333 ALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 66444333334444544 346899999988865
No 108
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=9.6e-14 Score=152.31 Aligned_cols=185 Identities=21% Similarity=0.352 Sum_probs=129.2
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-----------------
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------- 274 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----------------- 274 (676)
.|++|+|++.+++.|++.+..-.. .+...+.+.|.++||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999988875322 2334456678899999999999999999999976442
Q ss_pred ------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHh
Q 005815 275 ------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 344 (676)
Q Consensus 275 ------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~l 344 (676)
+..+.... ...+...+|++++.+.. ....|+||||+|.+. ....|.||..|
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------------~~aanaLLk~L 141 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------------ERAANALLKAV 141 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------------HHHHHHHHHHh
Confidence 11111110 01223457888877654 234699999999994 22457888888
Q ss_pred ccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHH
Q 005815 345 DGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLA 424 (676)
Q Consensus 345 d~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~ 424 (676)
+.... ++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+++.... ..+ ......++..+.|..+..+.
T Consensus 142 Eep~~--~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEPPP--RTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcCCC--CCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHH
Confidence 76433 34455455558899999998 87 799999999998887776322 333 33366788888887665544
Q ss_pred HH
Q 005815 425 NL 426 (676)
Q Consensus 425 ~l 426 (676)
-+
T Consensus 213 l~ 214 (394)
T PRK07940 213 LA 214 (394)
T ss_pred Hh
Confidence 33
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.7e-13 Score=154.71 Aligned_cols=206 Identities=21% Similarity=0.271 Sum_probs=149.0
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC----------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV---------- 273 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~---------- 273 (676)
+.+++++.+|+||+|++.+++.|...+.. .+.|..+|||||+|+|||++|+++|+.+.+
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 45678899999999999999988877642 245677899999999999999999998732
Q ss_pred --------------CEEEEechhHHHHHhhhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHHH
Q 005815 274 --------------PFFSLSGSEFIEMFVGVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDEREQ 335 (676)
Q Consensus 274 --------------p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~~ 335 (676)
.++.+++++ ..+...++++.+.+... ...|++|||+|.+. ..
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~ 132 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KE 132 (535)
T ss_pred ccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HH
Confidence 122332211 01234566666554321 23599999999993 34
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005815 336 TLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR 414 (676)
Q Consensus 336 ~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~ 414 (676)
.++.||..|+... ..+.+|.+|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+...+.. .+..+..++..
T Consensus 133 A~NALLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~ 207 (535)
T PRK08451 133 AFNALLKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARS 207 (535)
T ss_pred HHHHHHHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6778888888653 345666667778999999988 85 689999999999988888877765543 33447788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
+.| +.+++.+++..+...+ ...||.+++.+.
T Consensus 208 s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 208 GNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred cCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 776 7888888887777554 346777776644
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=99.55 E-value=3.6e-13 Score=138.30 Aligned_cols=214 Identities=18% Similarity=0.217 Sum_probs=137.9
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS 281 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s 281 (676)
...++..+|++++.-.. ....+.+..+.. ..+......++|+||+|+|||+|++|+++++ +..+++++..
T Consensus 10 ~~~~~~~tfdnF~~~~~--~~a~~~~~~~~~-----~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 10 VRLRDDATFANYYPGAN--AAALGYVERLCE-----ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCCcccccccCcCCh--HHHHHHHHHHhh-----ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 33456778999873222 222222222111 0011123579999999999999999999764 6788999998
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
++.... ..+.+..+.. .+|+|||++.+..+ ...+..+..+++. +..++..+|++++..
T Consensus 83 ~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~---------~~~~~~Lf~l~n~---~~~~g~~ilits~~~ 140 (234)
T PRK05642 83 ELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK---------ADWEEALFHLFNR---LRDSGRRLLLAASKS 140 (234)
T ss_pred HHHhhh--------HHHHHhhhhC--CEEEEechhhhcCC---------hHHHHHHHHHHHH---HHhcCCEEEEeCCCC
Confidence 876531 1222222222 59999999988422 2223334444443 334455677777766
Q ss_pred ccc---ccccccCCCccc--eEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005815 362 PEI---LDSALHRPGRFD--RQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 362 ~~~---Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 435 (676)
|.. ..|.|.+ ||. ..+.+..|+.++|.++++..+....+. ++.-++.|++...+ +.+.+.++++.-...+.
T Consensus 141 p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l 217 (234)
T PRK05642 141 PRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASL 217 (234)
T ss_pred HHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 654 3578888 884 578889999999999999665544332 23337888888775 88999999888875444
Q ss_pred HcCCCCCCHHHHHHHH
Q 005815 436 RRGKANITLKEIDDSI 451 (676)
Q Consensus 436 r~~~~~It~~di~~Ai 451 (676)
. .+..||..-+++++
T Consensus 218 ~-~~~~it~~~~~~~L 232 (234)
T PRK05642 218 Q-AQRKLTIPFLKETL 232 (234)
T ss_pred H-cCCcCCHHHHHHHh
Confidence 4 34668988877765
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.54 E-value=5.1e-14 Score=168.49 Aligned_cols=166 Identities=25% Similarity=0.399 Sum_probs=126.0
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSL 278 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~i 278 (676)
.+-++++++|.+.. ++.++.-|.... ..+++|+||||||||++++++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~e---i~~~i~iL~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEE---IRRTIQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHH---HHHHHHHHhcCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 45579999999885 555555443321 2469999999999999999999987 7789999
Q ss_pred echhHH--HHHhhhhhHHHHHHHHHHh-hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 279 SGSEFI--EMFVGVGASRVRDLFNKAK-ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 279 s~s~~~--~~~~g~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
+.+.+. ..+.|..+++++.+|+.+. ...|+||||||+|.+.+.++. .++. .. .+-|...+ .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~--~~~~-d~---~~~lkp~l----~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--DGAM-DA---GNMLKPAL----ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC--ccch-hH---HHHhcchh----hcCCCeE
Confidence 888876 3477888899999998854 457899999999999765432 1111 12 22232222 4678999
Q ss_pred EEecCCccc-----ccccccCCCccceEEecCCCCHHHHHHHHHHHhcC
Q 005815 356 IAATNRPEI-----LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN 399 (676)
Q Consensus 356 IaaTN~~~~-----Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~ 399 (676)
|++|+..+. +|+++.| ||+ .|.++.|+.+++..|++.+...
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 999998874 8999999 997 6889999999999999876644
No 112
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.54 E-value=3.3e-13 Score=143.80 Aligned_cols=207 Identities=21% Similarity=0.281 Sum_probs=138.4
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CCEE
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 276 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~p~i 276 (676)
.+|.+++++.+|+|++|++++++.+...+.. . . ..+++|+||||||||++++++++++. .+++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~--------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKE---K--------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhC---C--------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 4688999999999999999999888776532 1 1 12589999999999999999999872 3456
Q ss_pred EEechhHHHHHhhhhhHHHHHHHHH-Hhh-----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 277 SLSGSEFIEMFVGVGASRVRDLFNK-AKA-----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 277 ~is~s~~~~~~~g~~~~~vr~lF~~-A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
.+++++-.. ...++..+.. +.. ..+.+|+|||+|.+.. . ..+.|+..++....+
T Consensus 73 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~---~~~~L~~~le~~~~~ 132 (319)
T PRK00440 73 ELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------D---AQQALRRTMEMYSQN 132 (319)
T ss_pred Eeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------H---HHHHHHHHHhcCCCC
Confidence 665443211 1112222222 111 2356999999999831 1 234455555554433
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNE 429 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~ 429 (676)
..+|.++|.+..+.+++.+ |+. .+.+++|+.++...+++.++...+.. .+..+..++..+.| +.+.+.+.+..
T Consensus 133 --~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 133 --TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred --CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 4555566777777777777 764 68999999999999999888765542 33347888887765 44444444443
Q ss_pred HHHHHHHcCCCCCCHHHHHHHH
Q 005815 430 AAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 430 A~~~A~r~~~~~It~~di~~Ai 451 (676)
+. .. ...||.+++..++
T Consensus 207 ~~---~~--~~~it~~~v~~~~ 223 (319)
T PRK00440 207 AA---AT--GKEVTEEAVYKIT 223 (319)
T ss_pred HH---Hc--CCCCCHHHHHHHh
Confidence 33 22 3679999998776
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.8e-13 Score=155.57 Aligned_cols=215 Identities=19% Similarity=0.247 Sum_probs=153.4
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEE---
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL--- 278 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i--- 278 (676)
..+..++++.+|+||+|++.+++.|.+.+.. .+.+.++||+||+|+|||++|+++|+.+.+.....
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~ 80 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG 80 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence 4456788999999999999999988876642 24577899999999999999999999886532111
Q ss_pred ----------echhHHHH--------H--hhhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHH
Q 005815 279 ----------SGSEFIEM--------F--VGVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDERE 334 (676)
Q Consensus 279 ----------s~s~~~~~--------~--~g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~ 334 (676)
+|..+.+. . ...+...+|++++.+... ...|++|||+|.+. .
T Consensus 81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~ 146 (598)
T PRK09111 81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------T 146 (598)
T ss_pred CccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------H
Confidence 11111110 0 011234677777766532 34699999999993 2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005815 335 QTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIAT 413 (676)
Q Consensus 335 ~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~ 413 (676)
...|.||..|+.... .+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++...+++..+++.+.. .+..+..|++
T Consensus 147 ~a~naLLKtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 147 AAFNALLKTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR 221 (598)
T ss_pred HHHHHHHHHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 357888888876443 46666677777778888887 77 689999999999999998887765543 2334677788
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 414 RTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 414 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
.+.| +.+++.+++..+... +...||.+++.+.+
T Consensus 222 ~a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 222 AAEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred HcCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 8776 778888888776543 23579999888665
No 114
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.8e-13 Score=154.88 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=147.8
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------EEE
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 277 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------~i~ 277 (676)
..++++.+|+||+|++.+++.|+..+.. .+.++.+|||||+|+|||++|+++|+.+.++ +-.
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 3567889999999999999988876642 2356779999999999999999999987642 111
Q ss_pred E-echhHHHH-------Hhh---hhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHH
Q 005815 278 L-SGSEFIEM-------FVG---VGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 342 (676)
Q Consensus 278 i-s~s~~~~~-------~~g---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~ 342 (676)
+ +|..+... +-| .+...++++.+.+.. ....|++|||+|.+. ...++.||.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK 141 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLK 141 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHH
Confidence 1 11111000 001 122345555544332 344699999999983 236788888
Q ss_pred HhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHH
Q 005815 343 EMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGA 421 (676)
Q Consensus 343 ~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sga 421 (676)
.++.. ...+++|.+|+.++.+.+++++ |+ ..+.|.+++.++..++++..+...++. ++..+..|++.+.| +.+
T Consensus 142 ~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEEP--PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhccC--CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88753 3457777777888889989888 87 478999999999999998877655443 33347778888776 778
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 422 DLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 422 dL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
++.+++..+...+ ...|+.+++.+.+
T Consensus 216 ~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 216 DAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8888887765443 2468888777654
No 115
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.9e-13 Score=151.32 Aligned_cols=208 Identities=17% Similarity=0.239 Sum_probs=143.8
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------- 274 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------- 274 (676)
...+++++.+|+||+|++.+++.|.+.+.. .+.+..+|||||||+|||++|+++|+.+.++
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP 74 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC
Confidence 345677889999999999999988776642 2456779999999999999999999987442
Q ss_pred -----------------EEEEechhHHHHHhhhhhHHHHHHHHHHh----hCCCeEEEEcCCccccccCCCCCCCCChHH
Q 005815 275 -----------------FFSLSGSEFIEMFVGVGASRVRDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGIGGGNDER 333 (676)
Q Consensus 275 -----------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~ 333 (676)
++.+++... .+.+.++.+-+... .....|++|||+|.+.
T Consensus 75 c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-------------- 134 (451)
T PRK06305 75 CNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-------------- 134 (451)
T ss_pred CcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------
Confidence 222322110 11233443333222 2446799999999983
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHH
Q 005815 334 EQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIA 412 (676)
Q Consensus 334 ~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La 412 (676)
....+.|+..++... ..+++|.+|+.+..+.+.+.+ |+ ..+++..++.++....+...++..+.. ++..+..|+
T Consensus 135 ~~~~n~LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 135 KEAFNSLLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HHHHHHHHHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 224678888887643 356777777888888888888 77 578999999999988888877655432 333477888
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 413 TRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 413 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
..+.| +.+++.+++..... ..+ ..|+.+++.+++
T Consensus 210 ~~s~g-dlr~a~~~Lekl~~---~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 210 RAAQG-SLRDAESLYDYVVG---LFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHcCC-CHHHHHHHHHHHHH---hcc-CCcCHHHHHHHH
Confidence 88765 55555555554432 223 448988887665
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.9e-13 Score=150.86 Aligned_cols=217 Identities=16% Similarity=0.245 Sum_probs=145.4
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEE-------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF------- 276 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i------- 276 (676)
..+++++.+|++|+|++.+++.|+..+. ..+.|.++||+||||+|||++|+++|+.+.+.-.
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 3467889999999999999998877654 2245778999999999999999999998865210
Q ss_pred ---EE------echhHHHH-------Hhh---hhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHH
Q 005815 277 ---SL------SGSEFIEM-------FVG---VGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDER 333 (676)
Q Consensus 277 ---~i------s~s~~~~~-------~~g---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~ 333 (676)
.- +|..+... +.+ .+.+.++++.+.+.. ....|+||||+|.+.
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-------------- 140 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-------------- 140 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------------
Confidence 00 01111100 001 123456665555432 223599999999993
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHH
Q 005815 334 EQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIA 412 (676)
Q Consensus 334 ~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La 412 (676)
....+.|+..++... ...++|.+|+.+..+-+.+.+ |+ ..+++.+++.++-.+.++..++..+.. ++..+..++
T Consensus 141 ~~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 141 IAAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred HHHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 124567777776443 345555566667788888877 76 478999999988888888777654432 333477888
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHH
Q 005815 413 TRTPGFSGADLANLMNEAAILAGR-RGKANITLKEIDDSI 451 (676)
Q Consensus 413 ~~t~G~sgadL~~lv~~A~~~A~r-~~~~~It~~di~~Ai 451 (676)
..+.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 88765 666777777766655532 234689998887776
No 117
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.52 E-value=2.8e-13 Score=137.68 Aligned_cols=199 Identities=25% Similarity=0.397 Sum_probs=125.1
Q ss_pred CCCCcccccc-c--chhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEe
Q 005815 208 NTGVTFDDVA-G--VDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLS 279 (676)
Q Consensus 208 ~~~~~f~dv~-G--~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is 279 (676)
++..||++++ | ++.+....+.+. .++. .....++||||+|+|||+|++|+++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia---~~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIA---ENPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHH---HSTT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHH---hcCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3567999985 4 233333333332 2221 122359999999999999999999875 67899999
Q ss_pred chhHHHHHhhhhhHH-HHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEe
Q 005815 280 GSEFIEMFVGVGASR-VRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAA 358 (676)
Q Consensus 280 ~s~~~~~~~g~~~~~-vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 358 (676)
+.+|...+....... +.++.+.. ....+|+||++|.+..+ ...+ ..|...++.+..+++.+|+++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~---------~~~q---~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK---------QRTQ---EELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH---------HHHH---HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc---------hHHH---HHHHHHHHHHHhhCCeEEEEe
Confidence 999988765443222 22222222 24569999999999522 2223 334444444444555677777
Q ss_pred cCCccc---ccccccCCCccce--EEecCCCCHHHHHHHHHHHhcCCCCC--ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005815 359 TNRPEI---LDSALHRPGRFDR--QVSVGLPDIRGREQILKVHSNNKKLD--KDVSLSVIATRTPGFSGADLANLMNEAA 431 (676)
Q Consensus 359 TN~~~~---Ld~aLlrpGRfd~--~I~v~~Pd~~~R~~IL~~~l~~~~l~--~d~dl~~La~~t~G~sgadL~~lv~~A~ 431 (676)
...|.. +++.|.+ ||.. .+.+..|+.+.|.+|++..+...++. +++ +..|++..++ +.++|..+++...
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHH
Confidence 667665 4566766 7765 88999999999999999988776654 333 6778887764 8889999888876
Q ss_pred HHH
Q 005815 432 ILA 434 (676)
Q Consensus 432 ~~A 434 (676)
..+
T Consensus 214 ~~~ 216 (219)
T PF00308_consen 214 AYA 216 (219)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 118
>PRK06620 hypothetical protein; Validated
Probab=99.52 E-value=3.6e-13 Score=136.37 Aligned_cols=197 Identities=15% Similarity=0.248 Sum_probs=127.2
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCC--CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIP--KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p--~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
..+..+|++++--+.-...+..+..+...| + ..| +.++||||||+|||+|++++++..+..++. .....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~ 79 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN 79 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc
Confidence 456678999765443222222222222212 1 123 679999999999999999999988763322 11110
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
...+ ....+|+|||||.+- +..+-.+++.+ ..++..+||+++..|..
T Consensus 80 -----------~~~~-----~~~d~lliDdi~~~~--------------~~~lf~l~N~~---~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 80 -----------EEIL-----EKYNAFIIEDIENWQ--------------EPALLHIFNII---NEKQKYLLLTSSDKSRN 126 (214)
T ss_pred -----------hhHH-----hcCCEEEEeccccch--------------HHHHHHHHHHH---HhcCCEEEEEcCCCccc
Confidence 1111 123699999999551 11233333333 23455788888776654
Q ss_pred --ccccccCCCccce--EEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 005815 365 --LDSALHRPGRFDR--QVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438 (676)
Q Consensus 365 --Ld~aLlrpGRfd~--~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 438 (676)
+ |+|++ |+.. ++.+..||.+.+..+++.++.... +++++ ++.|+....| +.+.+.++++.....+...
T Consensus 127 l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~- 200 (214)
T PRK06620 127 FTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFALIS- 200 (214)
T ss_pred cch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHHHc-
Confidence 5 67777 8853 789999999999999988876544 33443 7888888875 7888999888865545444
Q ss_pred CCCCCHHHHHHHH
Q 005815 439 KANITLKEIDDSI 451 (676)
Q Consensus 439 ~~~It~~di~~Ai 451 (676)
+..||...+++++
T Consensus 201 ~~~it~~~~~~~l 213 (214)
T PRK06620 201 KRKITISLVKEVL 213 (214)
T ss_pred CCCCCHHHHHHHh
Confidence 3579998888765
No 119
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.52 E-value=7.3e-13 Score=144.14 Aligned_cols=227 Identities=23% Similarity=0.312 Sum_probs=157.8
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEech
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSGS 281 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~s 281 (676)
-.+..+|++++.-+.-.....-...+-..+. ..-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 4567899998655553333332233223321 123359999999999999999999987 3468999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
+|...++......-.+-|+.-. .-.+++||+|+.+..+... ..+.-.++|.+ ...++-+|+++...
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-----qeefFh~FN~l-------~~~~kqIvltsdr~ 218 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-----QEEFFHTFNAL-------LENGKQIVLTSDRP 218 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH-----HHHHHHHHHHH-------HhcCCEEEEEcCCC
Confidence 9988877665554445565544 4469999999999644211 12222233333 33445677777777
Q ss_pred cccc---cccccCCCccce--EEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005815 362 PEIL---DSALHRPGRFDR--QVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 362 ~~~L---d~aLlrpGRfd~--~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 435 (676)
|..+ .|.|.+ ||.. .+.+.+||.+.|..||+..+...++. ++.-+..++.... -+.++|+.+++.....|.
T Consensus 219 P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~ 295 (408)
T COG0593 219 PKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFAL 295 (408)
T ss_pred chhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHH
Confidence 7654 478887 8876 78889999999999999977665544 2223677777766 488999999999988887
Q ss_pred HcCCCCCCHHHHHHHHHHHHcCc
Q 005815 436 RRGKANITLKEIDDSIDRIVAGM 458 (676)
Q Consensus 436 r~~~~~It~~di~~Ai~~v~~g~ 458 (676)
..++ .||.+.+.+++.......
T Consensus 296 ~~~~-~iTi~~v~e~L~~~~~~~ 317 (408)
T COG0593 296 FTKR-AITIDLVKEILKDLLRAG 317 (408)
T ss_pred hcCc-cCcHHHHHHHHHHhhccc
Confidence 7665 899999998888775443
No 120
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.3e-13 Score=155.29 Aligned_cols=165 Identities=27% Similarity=0.401 Sum_probs=127.4
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH--------
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-------- 285 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-------- 285 (676)
.|-.|.+++|+.+.+.+.-.+.... + ...-++|+||||+|||+|++.||..++..|+.++..-..+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~---~---kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK---L---KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc---C---CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 5678999999988877655322211 1 1123899999999999999999999999999998765543
Q ss_pred -HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc-----CC--------CCC
Q 005815 286 -MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FT--------GNS 351 (676)
Q Consensus 286 -~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~-----~~--------~~~ 351 (676)
-|+|....++-+-+.+|....| +++|||||.++..- .+++ -..||+-+|- |. .=+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-----rGDP-----aSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-----RGDP-----ASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-----CCCh-----HHHHHhhcCHhhcCchhhccccCccchh
Confidence 3888889999999999988888 88899999997431 1121 2345555542 11 124
Q ss_pred CeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 005815 352 GVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
+|++|||+|..+.++.+|+. |+ .+|++.-....+..+|.+.|+=
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 69999999999999999999 98 5999999999999999998863
No 121
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=8.1e-14 Score=156.02 Aligned_cols=167 Identities=26% Similarity=0.390 Sum_probs=129.1
Q ss_pred CCcccccccchhhHHHHHHHHHH--hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH--
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQF--LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-- 285 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~--l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-- 285 (676)
.+--+|-.|++++|+.+.|++.- |+.. ...+-++|+||||+|||+++|+||..+|..|+.+|...+.+
T Consensus 407 ~iLdeDHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvA 478 (906)
T KOG2004|consen 407 EILDEDHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVA 478 (906)
T ss_pred HhhcccccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHH
Confidence 34446789999999999887764 3322 22344899999999999999999999999999998765433
Q ss_pred -------HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC-----------
Q 005815 286 -------MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF----------- 347 (676)
Q Consensus 286 -------~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~----------- 347 (676)
-|+|....++-+.++...-..| +++|||||.+++.- .+++. ..||+.+|--
T Consensus 479 eIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~-----qGDPa-----sALLElLDPEQNanFlDHYLd 547 (906)
T KOG2004|consen 479 EIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH-----QGDPA-----SALLELLDPEQNANFLDHYLD 547 (906)
T ss_pred hhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC-----CCChH-----HHHHHhcChhhccchhhhccc
Confidence 2888888899888888888887 88899999998311 12221 2344444421
Q ss_pred --CCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 005815 348 --TGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 348 --~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
-.-+.|++|||.|..+.++++|+. |+ ..|+++-...++...|.+.|+-
T Consensus 548 Vp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 548 VPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred cccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 112469999999999999999999 98 5899999999999999998874
No 122
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.50 E-value=9.4e-13 Score=151.61 Aligned_cols=214 Identities=19% Similarity=0.263 Sum_probs=139.5
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCChHHHHHHHHHHhc----------CCCEEEEechh
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEA----------GVPFFSLSGSE 282 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~g-vLL~GPpGTGKT~LArAlA~e~----------~~p~i~is~s~ 282 (676)
+.|.|.++..++|..++..... + ..|.+ ++|+|+||||||++++.+..++ .+.+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 4567777766666655544211 1 12334 5699999999999999998765 25678999854
Q ss_pred HHHH----------Hhhh-------hhHHHHHHHHHHh--hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHH
Q 005815 283 FIEM----------FVGV-------GASRVRDLFNKAK--ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 343 (676)
Q Consensus 283 ~~~~----------~~g~-------~~~~vr~lF~~A~--~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ 343 (676)
+... ..+. ....+..+|.... ....+||+|||||.|..+ .+.++..|+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~ 895 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDW 895 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHH
Confidence 3211 1011 1233455666542 234579999999999632 24566666665
Q ss_pred hccCCCCCCeEEEEecCC---cccccccccCCCccce-EEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCC
Q 005815 344 MDGFTGNSGVIVIAATNR---PEILDSALHRPGRFDR-QVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPG 417 (676)
Q Consensus 344 ld~~~~~~~ViVIaaTN~---~~~Ld~aLlrpGRfd~-~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t~G 417 (676)
.. .....++||+++|. ++.|+|.+.+ ||.. .+.|++++.+++.+||+..+.... ++++ .+..+|+....
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDd-AIELIArkVAq 970 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHT-AIQLCARKVAN 970 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHhhhh
Confidence 43 23456899999986 5567788877 6654 488899999999999999887532 3333 36677774442
Q ss_pred CcHHHHH---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 418 FSGADLA---NLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 418 ~sgadL~---~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
.+ +|++ .+|+.|+.. .+...|+.+|+.+|+.++.
T Consensus 971 ~S-GDARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 971 VS-GDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred cC-CHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 22 3444 456666543 3456899999999987763
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=7.4e-13 Score=152.35 Aligned_cols=216 Identities=16% Similarity=0.244 Sum_probs=144.5
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEE--------
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------- 276 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i-------- 276 (676)
.+++++.+|++|+|++.+++.|++.+. ..+.+.++||+||+|+|||++|+++|+.+.+.--
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 356788999999999999998877553 2256778999999999999999999999866210
Q ss_pred ---E-----EechhHHHH-------Hhh---hhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHH
Q 005815 277 ---S-----LSGSEFIEM-------FVG---VGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDERE 334 (676)
Q Consensus 277 ---~-----is~s~~~~~-------~~g---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~ 334 (676)
. -+|..+... +.+ .+...++++.+.+.. ....|++|||+|.+. .
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~ 141 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------T 141 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------H
Confidence 0 011111100 011 123456666555422 234699999999983 2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005815 335 QTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIAT 413 (676)
Q Consensus 335 ~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~ 413 (676)
...+.|+..|+.... .+++|.+|+.+..+.+.+.+ |+ ..++|..++.++....+...+...+.. ++..+..|+.
T Consensus 142 ~a~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 346788888876543 35556566667888888877 66 689999999999888888776654432 3334788888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHH
Q 005815 414 RTPGFSGADLANLMNEAAILAGR-RGKANITLKEIDDSI 451 (676)
Q Consensus 414 ~t~G~sgadL~~lv~~A~~~A~r-~~~~~It~~di~~Ai 451 (676)
.+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 217 ~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 8765 566666666655544411 224578888776654
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1e-12 Score=151.88 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=143.4
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEE------E
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------L 278 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~------i 278 (676)
..++++.+|++++|++.+++.|.+.+.. .+.+.++||+||+|+|||++|+++|+.+.+.... +
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 4577889999999999999998877753 1245679999999999999999999998652100 0
Q ss_pred -echh-----------HH--HHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHH
Q 005815 279 -SGSE-----------FI--EMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQL 340 (676)
Q Consensus 279 -s~s~-----------~~--~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~L 340 (676)
.|.. +. +.....+.+.+|++++.+.. ....|+||||+|.+. ....+.|
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naL 141 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNAL 141 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHH
Confidence 0110 00 00112334577888877643 233699999999993 2357888
Q ss_pred HHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCc
Q 005815 341 LTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFS 419 (676)
Q Consensus 341 L~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~s 419 (676)
|..++.. ...+++|++|+.++.+-+.+++ |+ ..+.|..++.++....+...+.+.+.. .+..+..++..+.| +
T Consensus 142 LK~LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~ 215 (620)
T PRK14948 142 LKTLEEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-G 215 (620)
T ss_pred HHHHhcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 8888853 3456777778888888888887 77 678898888888777777666554332 22337788888776 4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 420 GADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 420 gadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
.+++.++++..... . ..|+.+++.+.
T Consensus 216 lr~A~~lLeklsL~---~--~~It~e~V~~l 241 (620)
T PRK14948 216 LRDAESLLDQLSLL---P--GPITPEAVWDL 241 (620)
T ss_pred HHHHHHHHHHHHhc---c--CCCCHHHHHHH
Confidence 56666666654332 1 35777666543
No 125
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=3.8e-13 Score=159.02 Aligned_cols=164 Identities=24% Similarity=0.359 Sum_probs=119.1
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH--------
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-------- 285 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-------- 285 (676)
+|..|++.+|+.+.+.+....... ......++|+||||+|||++++.+|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 448999999999887766432211 112235999999999999999999999999999988665322
Q ss_pred -HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc-----CC--------CCC
Q 005815 286 -MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FT--------GNS 351 (676)
Q Consensus 286 -~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~-----~~--------~~~ 351 (676)
.|.|....++...+..+....| ||||||+|.+..... ++ ....|+..+|. |. .-+
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g~-----~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----GD-----PASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----CC-----HHHHHHHHhccccEEEEecccccccccCC
Confidence 2455555566666666554444 899999999964321 11 23455555542 11 126
Q ss_pred CeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 005815 352 GVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
++++|+|+|.. .++++|+. ||. .|.+..++.++..+|.+.|+.
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 79999999987 59999999 994 899999999999999988874
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=9.2e-13 Score=152.08 Aligned_cols=212 Identities=18% Similarity=0.265 Sum_probs=142.6
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEE-----EEe
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-----SLS 279 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i-----~is 279 (676)
.+++++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++... .++
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4678899999999999999988776642 134567899999999999999999998754211 000
Q ss_pred -ch---hHHHH----H------hhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHH
Q 005815 280 -GS---EFIEM----F------VGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLL 341 (676)
Q Consensus 280 -~s---~~~~~----~------~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL 341 (676)
|. .+... + ...+.+.++++.+.+.. ....|+||||+|.+. ...++.|+
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLL 141 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALL 141 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHH
Confidence 11 11000 0 01122345555544332 234699999999983 23577888
Q ss_pred HHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 005815 342 TEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSG 420 (676)
Q Consensus 342 ~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sg 420 (676)
..++... ..+++|.+++..+.+.+.+.+ |+ ..+.|..++..+...++...+...++. ++..+..|+..+.| +.
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 8887644 345666667777777778877 76 478899999999988888877665432 23337788887776 67
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 421 ADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 421 adL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+++.+.++..... +...|+.+++...+
T Consensus 216 r~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 216 RDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 7777776654432 34578988876643
No 127
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=6.3e-13 Score=144.47 Aligned_cols=175 Identities=30% Similarity=0.468 Sum_probs=123.2
Q ss_pred ccccchhhHHHHHHHHHH-hcChhHHhhh-CCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-HHhh-h
Q 005815 215 DVAGVDEAKQDFQEIVQF-LQTPEKFAAV-GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-MFVG-V 290 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~-l~~~~~~~~~-g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-~~~g-~ 290 (676)
-|+|++++|..+...+.. ++.......+ ....|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999998765542 1111100111 1234689999999999999999999999999999999887764 4655 3
Q ss_pred hhHHHHHHHHHH--------------------------------------------------------------------
Q 005815 291 GASRVRDLFNKA-------------------------------------------------------------------- 302 (676)
Q Consensus 291 ~~~~vr~lF~~A-------------------------------------------------------------------- 302 (676)
.++.++.+|+.|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 344444444443
Q ss_pred -----------------------------------------------------------------------hhCCCeEEE
Q 005815 303 -----------------------------------------------------------------------KANSPCLVF 311 (676)
Q Consensus 303 -----------------------------------------------------------------------~~~~P~ILf 311 (676)
+...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 001335999
Q ss_pred EcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC--------CCCCCeEEEEecC----CcccccccccCCCccceEE
Q 005815 312 IDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--------TGNSGVIVIAATN----RPEILDSALHRPGRFDRQV 379 (676)
Q Consensus 312 IDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~--------~~~~~ViVIaaTN----~~~~Ld~aLlrpGRfd~~I 379 (676)
|||||.++.+... .+.+-..+.+...||..++|- -.+++|++||+.- .|+.|=|.|.- ||..++
T Consensus 253 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRV 328 (441)
T ss_pred EEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999999865421 233444566888899988873 2345788888754 35556666654 999999
Q ss_pred ecCCCCHHHHHHHH
Q 005815 380 SVGLPDIRGREQIL 393 (676)
Q Consensus 380 ~v~~Pd~~~R~~IL 393 (676)
.+..++.++..+||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999888
No 128
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=3.2e-13 Score=162.07 Aligned_cols=203 Identities=24% Similarity=0.346 Sum_probs=145.2
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSL 278 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~i 278 (676)
.+-.++.++|.++. ++.++..|... ...+++|+||||||||++++++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~e---i~~~~~~l~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEE---IRRTIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHH---HHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 45578999999985 44444444332 23468999999999999999999985 6788999
Q ss_pred echhHH--HHHhhhhhHHHHHHHHHHhh-CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 279 SGSEFI--EMFVGVGASRVRDLFNKAKA-NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 279 s~s~~~--~~~~g~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
+.+.+. ..|.|..+.+++.+|+.+.. ..|+||||||||.+.+.+.. .+. ....+.|...+ .++.+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~---~d~~~~Lk~~l----~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGA---MDAGNMLKPAL----ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cch---hHHHHHhchhh----hcCceEE
Confidence 888775 45778888899999998865 45899999999999754321 111 12233333222 4567999
Q ss_pred EEecCCcc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-----ccccHHHHHHhCCCCc-----H
Q 005815 356 IAATNRPE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-----KDVSLSVIATRTPGFS-----G 420 (676)
Q Consensus 356 IaaTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-----~d~dl~~La~~t~G~s-----g 420 (676)
|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+....... .+..+...+..+..|- +
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lP 382 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLP 382 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCc
Confidence 99999775 37999999 996 58999999999999998775543322 2334666666666553 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 005815 421 ADLANLMNEAAILAGR 436 (676)
Q Consensus 421 adL~~lv~~A~~~A~r 436 (676)
..--.++.+|+..+..
T Consensus 383 dkAidlld~a~a~~~~ 398 (852)
T TIGR03346 383 DKAIDLIDEAAARIRM 398 (852)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4455788888766543
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=7.5e-13 Score=145.38 Aligned_cols=219 Identities=23% Similarity=0.294 Sum_probs=133.8
Q ss_pred cccchhhHHHHHHHHHH----hcCh-hHHhhhCCCC-CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-HHh
Q 005815 216 VAGVDEAKQDFQEIVQF----LQTP-EKFAAVGAKI-PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-MFV 288 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~----l~~~-~~~~~~g~~~-p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-~~~ 288 (676)
|+|++++++.+...+.. +... ..-...+... +.++||+||||||||++|+++|..++.||..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 79999999999766622 1110 0000011112 346999999999999999999999999999999887653 466
Q ss_pred hhhh-HHHHHHHHHH----hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-----------CCC
Q 005815 289 GVGA-SRVRDLFNKA----KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-----------NSG 352 (676)
Q Consensus 289 g~~~-~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-----------~~~ 352 (676)
|... ..+..++..+ ....++||||||||.+.+++.......+-..+.+++.||..|++... ..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 6542 2333443322 23467899999999998754332111122223466667777765421 124
Q ss_pred eEEEEecCCcc--------------------------------------------------cccccccCCCccceEEecC
Q 005815 353 VIVIAATNRPE--------------------------------------------------ILDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 353 ViVIaaTN~~~--------------------------------------------------~Ld~aLlrpGRfd~~I~v~ 382 (676)
.++|.|+|-.. .+.|+++ ||+|.++.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecC
Confidence 67777777510 0223443 4999999999
Q ss_pred CCCHHHHHHHHHHH----hc-------CCCCC---ccccHHHHHHh--CCCCcHHHHHHHHHHHHHHHHH
Q 005815 383 LPDIRGREQILKVH----SN-------NKKLD---KDVSLSVIATR--TPGFSGADLANLMNEAAILAGR 436 (676)
Q Consensus 383 ~Pd~~~R~~IL~~~----l~-------~~~l~---~d~dl~~La~~--t~G~sgadL~~lv~~A~~~A~r 436 (676)
+.+.++..+|+... .+ ...+. .+..++.|++. ...+-.+.|+.+++....-...
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 99999999988652 11 11211 12225666665 2344556677776666554443
No 130
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=8.4e-13 Score=143.56 Aligned_cols=175 Identities=29% Similarity=0.448 Sum_probs=126.0
Q ss_pred cccchhhHHHHHHHHHH-hcChhHHhhhC-CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-HHhh-hh
Q 005815 216 VAGVDEAKQDFQEIVQF-LQTPEKFAAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-MFVG-VG 291 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~-l~~~~~~~~~g-~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-~~~g-~~ 291 (676)
|+|++++|+.+...+.. ++......... ...|+++||+||||+|||++|+++|..++.||+.+++++|.+ .|+| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 89999999999776632 11110000111 113678999999999999999999999999999999998886 5777 33
Q ss_pred hHHHHHHHHHHh--------------------------------------------------------------------
Q 005815 292 ASRVRDLFNKAK-------------------------------------------------------------------- 303 (676)
Q Consensus 292 ~~~vr~lF~~A~-------------------------------------------------------------------- 303 (676)
+..++.+|+.|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 455555555550
Q ss_pred ----------------------------------------------------------------------hCCCeEEEEc
Q 005815 304 ----------------------------------------------------------------------ANSPCLVFID 313 (676)
Q Consensus 304 ----------------------------------------------------------------------~~~P~ILfID 313 (676)
...-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0123599999
Q ss_pred CCccccccCCCCCCCCChHHHHHHHHHHHHhccC--------CCCCCeEEEEecC----CcccccccccCCCccceEEec
Q 005815 314 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--------TGNSGVIVIAATN----RPEILDSALHRPGRFDRQVSV 381 (676)
Q Consensus 314 EID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~--------~~~~~ViVIaaTN----~~~~Ld~aLlrpGRfd~~I~v 381 (676)
|||.+..+.+. ++.+-..+.+...||..++|- -.+++|++||+.- .|+.|-|.|.- ||..++.+
T Consensus 257 EiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 257 EIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred cchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 99999876432 233444566888899988873 2345788887753 45566677765 99999999
Q ss_pred CCCCHHHHHHHHH
Q 005815 382 GLPDIRGREQILK 394 (676)
Q Consensus 382 ~~Pd~~~R~~IL~ 394 (676)
..++.++..+||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999998883
No 131
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.46 E-value=5.6e-13 Score=148.88 Aligned_cols=208 Identities=24% Similarity=0.355 Sum_probs=157.6
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------EEEE
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSL 278 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------~i~i 278 (676)
.++++.+|+|++|++.+...|.+.+..= +...+.||+||.|||||++||.+|..+++. +..+
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 4678899999999999999999887642 345579999999999999999999988653 2222
Q ss_pred -ec--------hhHHHH--HhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHH
Q 005815 279 -SG--------SEFIEM--FVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 343 (676)
Q Consensus 279 -s~--------s~~~~~--~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ 343 (676)
+| .|+++. -...+-+.+|++.+.+.. ....|.+|||+|-|. .+..|.||..
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhcc
Confidence 11 111111 112244567888877643 234699999999993 5678999999
Q ss_pred hccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHH
Q 005815 344 MDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGAD 422 (676)
Q Consensus 344 ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgad 422 (676)
++.- ..+|++|.+|..++.+++.+++ |+ .++.|..-+.++-...|...+.+..+. ++..+..+++...| +.+|
T Consensus 143 LEEP--P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 143 LEEP--PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred cccC--ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 9854 4579999999999999999998 87 578899899999999999999887765 33347888888887 7899
Q ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHH
Q 005815 423 LANLMNEAAILAGRRGKANITLKEID 448 (676)
Q Consensus 423 L~~lv~~A~~~A~r~~~~~It~~di~ 448 (676)
...++..|..... ..|+.+.+.
T Consensus 217 alslLDq~i~~~~----~~It~~~v~ 238 (515)
T COG2812 217 ALSLLDQAIAFGE----GEITLESVR 238 (515)
T ss_pred HHHHHHHHHHccC----CcccHHHHH
Confidence 9999999986542 455555544
No 132
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=2.8e-12 Score=133.87 Aligned_cols=190 Identities=22% Similarity=0.279 Sum_probs=118.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh------HHHHHhhhhhHHHHH--------------------HHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE------FIEMFVGVGASRVRD--------------------LFNK 301 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~------~~~~~~g~~~~~vr~--------------------lF~~ 301 (676)
+.+||+||||||||++|+++|..+|.|++.++|.. +...+.+.....+.+ .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 45999999999999999999999999999997753 322222111111111 1112
Q ss_pred HhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc----cC-------CCCCCeEEEEecCCcc-----cc
Q 005815 302 AKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----GF-------TGNSGVIVIAATNRPE-----IL 365 (676)
Q Consensus 302 A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld----~~-------~~~~~ViVIaaTN~~~-----~L 365 (676)
|.. ...+|+||||+.+. .+.+..+..++.+-. +. ..+.++.||+|+|... .+
T Consensus 102 A~~-~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHH-cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 222 23699999999972 333344444443210 00 0123678999999763 46
Q ss_pred cccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--cHHHHHHhC---C-CCcHHHHHHHHHHHHHHHHHcCC
Q 005815 366 DSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDV--SLSVIATRT---P-GFSGADLANLMNEAAILAGRRGK 439 (676)
Q Consensus 366 d~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~--dl~~La~~t---~-G~sgadL~~lv~~A~~~A~r~~~ 439 (676)
++++++ || ..+.++.|+.++-.+|++.+.. ..+.. .+-.++..+ . -.... ++..+.-+...+....+
T Consensus 170 ~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~~ 242 (262)
T TIGR02640 170 QDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDIP 242 (262)
T ss_pred cHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCCC
Confidence 888998 98 6899999999999999998762 22111 011121111 1 11111 55566666666666677
Q ss_pred CCCCHHHHHHHHHHHHc
Q 005815 440 ANITLKEIDDSIDRIVA 456 (676)
Q Consensus 440 ~~It~~di~~Ai~~v~~ 456 (676)
..++.+||.+.+..++.
T Consensus 243 ~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 243 VDVDDEDFVDLCIDILA 259 (262)
T ss_pred CCCCcHHHHHHHHHHhc
Confidence 88999999988877754
No 133
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.46 E-value=2.6e-12 Score=130.48 Aligned_cols=193 Identities=22% Similarity=0.347 Sum_probs=132.0
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSE 282 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~ 282 (676)
.....+.+++++|++.+|+.|.+-...+.. ..+..++||+|++|||||+++||+..+. |..++.++..+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 345679999999999999999876654322 2345679999999999999999999876 78899998877
Q ss_pred HHHHHhhhhhHHHHHHHHHHhh-CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC--CCCCeEEEEec
Q 005815 283 FIEMFVGVGASRVRDLFNKAKA-NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT--GNSGVIVIAAT 359 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~--~~~~ViVIaaT 359 (676)
+.. +..+++..+. ..+-|||+|++. + . ..+ .....|-..|||-- ...+|++.+|+
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLs-F-e--------~~d---~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLS-F-E--------EGD---TEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCC-C-C--------CCc---HHHHHHHHHhcCccccCCCcEEEEEec
Confidence 653 4455555442 345799999863 2 1 111 12344555566542 35689999999
Q ss_pred CCcccccccc----------cCC-----------CccceEEecCCCCHHHHHHHHHHHhcCCCCCccc-c----HHHHHH
Q 005815 360 NRPEILDSAL----------HRP-----------GRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDV-S----LSVIAT 413 (676)
Q Consensus 360 N~~~~Ld~aL----------lrp-----------GRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~-d----l~~La~ 413 (676)
|+-+.++... +.| .||..++.|..||.++-.+|+++++...++.-+. . ....|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9865543321 111 2999999999999999999999999766654331 1 123344
Q ss_pred hCCCCcHHHHHHHHH
Q 005815 414 RTPGFSGADLANLMN 428 (676)
Q Consensus 414 ~t~G~sgadL~~lv~ 428 (676)
.-.|.||+--.+.++
T Consensus 229 ~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 229 RRGGRSGRTARQFID 243 (249)
T ss_pred HcCCCCHHHHHHHHH
Confidence 445556654444443
No 134
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.45 E-value=5.9e-13 Score=142.88 Aligned_cols=218 Identities=21% Similarity=0.310 Sum_probs=134.2
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEec-
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSLSG- 280 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~p~i~is~- 280 (676)
.+..|++|+|++++++.+.-..- ++ .-.++||+||||||||++||++++-+ ++|+-..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DP---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---cc---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 46789999999999987764221 01 01369999999999999999999987 332211110
Q ss_pred --hhH---------------HHHHhhhhhHHHHH--HHHHH-------------hhCCCeEEEEcCCccccccCCCCCCC
Q 005815 281 --SEF---------------IEMFVGVGASRVRD--LFNKA-------------KANSPCLVFIDEIDAVGRQRGTGIGG 328 (676)
Q Consensus 281 --s~~---------------~~~~~g~~~~~vr~--lF~~A-------------~~~~P~ILfIDEID~l~~~r~~~~~~ 328 (676)
.++ .+...+.+..++-. .|+.+ ......+|||||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 000 00000101111100 01111 00112499999999983
Q ss_pred CChHHHHHHHHHHHHhccCC-----------CCCCeEEEEecCCcc-cccccccCCCccceEEecCCCCH-HHHHHHHHH
Q 005815 329 GNDEREQTLNQLLTEMDGFT-----------GNSGVIVIAATNRPE-ILDSALHRPGRFDRQVSVGLPDI-RGREQILKV 395 (676)
Q Consensus 329 ~~~~~~~~l~~LL~~ld~~~-----------~~~~ViVIaaTN~~~-~Ld~aLlrpGRfd~~I~v~~Pd~-~~R~~IL~~ 395 (676)
..++..|+..|+.-. ....+++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++.
T Consensus 142 -----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 234455555554221 234689999999655 58889998 9999999998866 899999987
Q ss_pred HhcCCC----C------C--------------------cccc---HHHHHHhCC-CCcHHHHHHHHHHHHHHHHHcCCCC
Q 005815 396 HSNNKK----L------D--------------------KDVS---LSVIATRTP-GFSGADLANLMNEAAILAGRRGKAN 441 (676)
Q Consensus 396 ~l~~~~----l------~--------------------~d~d---l~~La~~t~-G~sgadL~~lv~~A~~~A~r~~~~~ 441 (676)
...... . . ++.. +..++..+. .-..++|. +++.|...|..+|+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 215 RDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEA 293 (334)
T ss_pred hhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCe
Confidence 432110 0 0 0000 122233332 12456665 9999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 005815 442 ITLKEIDDSIDRIV 455 (676)
Q Consensus 442 It~~di~~Ai~~v~ 455 (676)
|+.+|++.+..-++
T Consensus 294 V~~~Di~~~~~~vl 307 (334)
T PRK13407 294 VGRSHLRSVATMAL 307 (334)
T ss_pred eCHHHHHHHHHHhh
Confidence 99999988875554
No 135
>PRK09087 hypothetical protein; Validated
Probab=99.42 E-value=2.7e-12 Score=131.09 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=131.2
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
....+..+|++++.-+.-...+ ..+..+. + ...+.++|+||+|+|||+|+++++...++. +++..+|.
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~a~----~~l~~~~-----~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~ 79 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRAAV----SLVDHWP-----N-WPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG 79 (226)
T ss_pred CCCCCCCChhceeecCchHHHH----HHHHhcc-----c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc
Confidence 3445667899987522111111 1222211 0 112349999999999999999999887654 45554444
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
..+. ..... .+|+|||+|.+.. . +..+-.++.. ....+..+||+++..|..
T Consensus 80 ~~~~-----------~~~~~---~~l~iDDi~~~~~---------~---~~~lf~l~n~---~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 80 SDAA-----------NAAAE---GPVLIEDIDAGGF---------D---ETGLFHLINS---VRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred hHHH-----------Hhhhc---CeEEEECCCCCCC---------C---HHHHHHHHHH---HHhCCCeEEEECCCChHH
Confidence 3221 11111 3899999998721 1 1123333333 233345577777666653
Q ss_pred ---ccccccCCCccc--eEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 005815 365 ---LDSALHRPGRFD--RQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438 (676)
Q Consensus 365 ---Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 438 (676)
..+.|++ ||. ..+++..|+.++|.++++.++....+. ++..+..|++...+ +.+.+..+++.....+...+
T Consensus 131 ~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~ 207 (226)
T PRK09087 131 WNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK 207 (226)
T ss_pred hccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC
Confidence 3577877 885 699999999999999999998765543 23337888888875 67777777777766665544
Q ss_pred CCCCCHHHHHHHHHHH
Q 005815 439 KANITLKEIDDSIDRI 454 (676)
Q Consensus 439 ~~~It~~di~~Ai~~v 454 (676)
..||...+++++..+
T Consensus 208 -~~it~~~~~~~l~~~ 222 (226)
T PRK09087 208 -SRITRALAAEVLNEM 222 (226)
T ss_pred -CCCCHHHHHHHHHhh
Confidence 669999999988764
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=5.6e-12 Score=145.69 Aligned_cols=207 Identities=18% Similarity=0.307 Sum_probs=143.9
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 274 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 274 (676)
+.+++++.+|+||+|++.+++.|...+.. .+.+..+|||||+|+|||++|+++|..+.+.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~C 75 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEAC 75 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 44678899999999999999988776641 2457789999999999999999999987532
Q ss_pred ----------------EEEEechhHHHHHhhhhhHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHH
Q 005815 275 ----------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDERE 334 (676)
Q Consensus 275 ----------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~ 334 (676)
++.+++++ ..+...++.+.+.+... ...|++|||+|.+. .
T Consensus 76 g~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~ 135 (614)
T PRK14971 76 NECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------Q 135 (614)
T ss_pred CcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------H
Confidence 22222211 01134566766665432 23599999999993 2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005815 335 QTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIAT 413 (676)
Q Consensus 335 ~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~ 413 (676)
...+.|+..|+.... ..++|.+|+.+..+-+.+++ |+ ..+.|.+++..+....++..+...++. ++..+..|+.
T Consensus 136 ~a~naLLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~ 210 (614)
T PRK14971 136 AAFNAFLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQ 210 (614)
T ss_pred HHHHHHHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 357788888886543 45666666677888888888 76 579999999999988888877766654 2334778888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 414 RTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 414 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
.+.| +.+++.+++.....++ +.. |+.+++.+.+
T Consensus 211 ~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 211 KADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 7754 5666666665544433 322 7776665443
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.41 E-value=2.1e-12 Score=139.02 Aligned_cols=222 Identities=21% Similarity=0.265 Sum_probs=139.8
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEe-
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSLS- 279 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~p~i~is- 279 (676)
.....|++|+|++++|..|.... .+| ...|+||.||+|||||++||+++..+ +.||..-.
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 34678999999999998876433 222 13579999999999999999998765 23443000
Q ss_pred -----chhHHHH-------------------HhhhhhHHH------HHHHHHHh---------hCCCeEEEEcCCccccc
Q 005815 280 -----GSEFIEM-------------------FVGVGASRV------RDLFNKAK---------ANSPCLVFIDEIDAVGR 320 (676)
Q Consensus 280 -----~s~~~~~-------------------~~g~~~~~v------r~lF~~A~---------~~~P~ILfIDEID~l~~ 320 (676)
+++.... -.+....++ ...|.... .....+||||||+.+..
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 0000000 011122221 11111111 11235999999999942
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhcc---------C--CCCCCeEEEEecCCcc-cccccccCCCccceEEecCCCC-HH
Q 005815 321 QRGTGIGGGNDEREQTLNQLLTEMDG---------F--TGNSGVIVIAATNRPE-ILDSALHRPGRFDRQVSVGLPD-IR 387 (676)
Q Consensus 321 ~r~~~~~~~~~~~~~~l~~LL~~ld~---------~--~~~~~ViVIaaTN~~~-~Ld~aLlrpGRfd~~I~v~~Pd-~~ 387 (676)
.++..|+..|+. . .....+++|++.|..+ .+.++++. ||..++.+..|+ .+
T Consensus 159 --------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 159 --------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred --------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 234445555532 1 1234688899888665 58899999 999999999997 58
Q ss_pred HHHHHHHHHhcCC--C-----------------------------CCccc--cHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 388 GREQILKVHSNNK--K-----------------------------LDKDV--SLSVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 388 ~R~~IL~~~l~~~--~-----------------------------l~~d~--dl~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
.+.+|++...... . +++.+ -+..++..+.--+.+---.+++.|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 9999998753211 0 10000 0223333333335555557889999999
Q ss_pred HHcCCCCCCHHHHHHHHHHHHcC
Q 005815 435 GRRGKANITLKEIDDSIDRIVAG 457 (676)
Q Consensus 435 ~r~~~~~It~~di~~Ai~~v~~g 457 (676)
+-+|+..|+.+|+..+..-++..
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998777543
No 138
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.40 E-value=6.7e-12 Score=131.56 Aligned_cols=128 Identities=23% Similarity=0.353 Sum_probs=90.4
Q ss_pred CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC------------cccccccccCCCc
Q 005815 307 PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR------------PEILDSALHRPGR 374 (676)
Q Consensus 307 P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~------------~~~Ld~aLlrpGR 374 (676)
|.||||||+|-| +-+.-..+|.-+.. .+. -++|.|||+ |+-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs--e~a----PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES--ELA----PIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc--ccC----cEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 667777777766 22222333333321 122 267777775 4446666666 6
Q ss_pred cceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 005815 375 FDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDR 453 (676)
Q Consensus 375 fd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~ 453 (676)
+ ..|...+.+.++-++|++..++...+. .+..++.|+....--|-+---+|+.-|...|.++++..|..+|+++|.+-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 5 477778889999999999998776654 33347888887776777777789999999999999999999999999765
Q ss_pred H
Q 005815 454 I 454 (676)
Q Consensus 454 v 454 (676)
.
T Consensus 432 F 432 (450)
T COG1224 432 F 432 (450)
T ss_pred H
Confidence 4
No 139
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.40 E-value=9.1e-12 Score=144.31 Aligned_cols=218 Identities=22% Similarity=0.316 Sum_probs=134.3
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEE
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 277 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~ 277 (676)
.++.+|++++|++.+.+.+...+ .. ..+..++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~i---a~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKV---AS---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHH---hc---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 35678999999999888664333 11 224579999999999999999998755 467999
Q ss_pred EechhHH-------HHHhhhhhH----HHHHHHHH----------HhhCCCeEEEEcCCccccccCCCCCCCCChHHHHH
Q 005815 278 LSGSEFI-------EMFVGVGAS----RVRDLFNK----------AKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQT 336 (676)
Q Consensus 278 is~s~~~-------~~~~g~~~~----~vr~lF~~----------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~ 336 (676)
++|..+. ....+.... ..+..+.. .......+|||||++.+- ...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHH
Confidence 9987642 111111110 01111110 001234599999999883 223333
Q ss_pred HHHHHHHhc------cC-----------------CCCCCeEEEEe-cCCcccccccccCCCccceEEecCCCCHHHHHHH
Q 005815 337 LNQLLTEMD------GF-----------------TGNSGVIVIAA-TNRPEILDSALHRPGRFDRQVSVGLPDIRGREQI 392 (676)
Q Consensus 337 l~~LL~~ld------~~-----------------~~~~~ViVIaa-TN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~I 392 (676)
+..++..-. .+ .....+++|++ |+.++.++++|++ ||. .+.+++++.++...|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 333333210 00 01223566655 5567889999988 886 678888999999999
Q ss_pred HHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc--------CCCCCCHHHHHHHHHH
Q 005815 393 LKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRR--------GKANITLKEIDDSIDR 453 (676)
Q Consensus 393 L~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~--------~~~~It~~di~~Ai~~ 453 (676)
++..+...... .+..+..|++.++ .++..-+++..+...++.+ +...|+.+|+++++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99988765422 2223666777665 4555555555554443222 2236899999888753
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=6.9e-12 Score=147.53 Aligned_cols=163 Identities=21% Similarity=0.321 Sum_probs=114.1
Q ss_pred cccchhhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-----HHhh
Q 005815 216 VAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-----MFVG 289 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~-gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-----~~~g 289 (676)
|+|++++++.+.+.+......-. ....|. .+||+||||||||++|+++|..++.+|+.++++++.+ .+.|
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 89999999999988875422100 012243 5999999999999999999999999999999998854 2333
Q ss_pred hhhHH-----HHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC--CC-------CCCeEE
Q 005815 290 VGASR-----VRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--TG-------NSGVIV 355 (676)
Q Consensus 290 ~~~~~-----vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~--~~-------~~~ViV 355 (676)
..... -..+.+..+.+..|||||||||.+. ..+.+.|+..||.- .. -.++++
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~--------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhh--------------HHHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 21110 1122333344556899999999993 23556666666532 11 136789
Q ss_pred EEecCCc-------------------------ccccccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 005815 356 IAATNRP-------------------------EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 356 IaaTN~~-------------------------~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
|+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+..++.
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999932 124566666 9999999999999999999887654
No 141
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.1e-11 Score=132.72 Aligned_cols=219 Identities=20% Similarity=0.331 Sum_probs=151.5
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-----EEEEechhHHH
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSLSGSEFIE 285 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-----~i~is~s~~~~ 285 (676)
..-+.+.+.++..+.+..++...-. ...|.++++|||||||||..++.++.++.-+ ++++||.....
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t 85 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT 85 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC
Confidence 3344488999988888777554222 2335669999999999999999999988433 89999965543
Q ss_pred HHh---------------hhhhHH-HHHHHHHHh-hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC
Q 005815 286 MFV---------------GVGASR-VRDLFNKAK-ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT 348 (676)
Q Consensus 286 ~~~---------------g~~~~~-vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~ 348 (676)
.+. |..... ...+++... ....-||++||+|.|..+.+ .++..|+...+..
T Consensus 86 ~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~- 153 (366)
T COG1474 86 PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN- 153 (366)
T ss_pred HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc-
Confidence 211 111111 222222222 24567999999999975431 5788888876655
Q ss_pred CCCCeEEEEecCCc---ccccccccCCCccc-eEEecCCCCHHHHHHHHHHHhcCC----CCCccccHHHHH---HhCCC
Q 005815 349 GNSGVIVIAATNRP---EILDSALHRPGRFD-RQVSVGLPDIRGREQILKVHSNNK----KLDKDVSLSVIA---TRTPG 417 (676)
Q Consensus 349 ~~~~ViVIaaTN~~---~~Ld~aLlrpGRfd-~~I~v~~Pd~~~R~~IL~~~l~~~----~l~~d~dl~~La---~~t~G 417 (676)
...+.+|+.+|.. +.+||.+.+ +|. ..|.|++.+.++...|++...+.. .+++++ +..+| ....|
T Consensus 154 -~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G 229 (366)
T COG1474 154 -KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG 229 (366)
T ss_pred -ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc
Confidence 5678999999976 468888877 444 368999999999999998876532 233332 33333 34444
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 418 FSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 418 ~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
..+---.+++.|+..|.+++...++.+++..|.+.+
T Consensus 230 -DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 230 -DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred -cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 444445789999999999999999999999995544
No 142
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.39 E-value=6.9e-12 Score=148.55 Aligned_cols=197 Identities=24% Similarity=0.354 Sum_probs=128.9
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH-----Hh
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-----FV 288 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~g-vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~-----~~ 288 (676)
.|+|++++++.+.+.+...+..- .....|.| +||+||||||||++|+++|..++.+++.++++++.+. ..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~----~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGL----GNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCC----CCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 48899999988887776532110 00122444 8999999999999999999999999999999998653 22
Q ss_pred hhh-----hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC---------CCCCeE
Q 005815 289 GVG-----ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT---------GNSGVI 354 (676)
Q Consensus 289 g~~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~---------~~~~Vi 354 (676)
|.. ......+.+..+.+..+||||||+|.+. ..+.+.|++.+|+.. .-.+++
T Consensus 531 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~--------------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~i 596 (731)
T TIGR02639 531 GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH--------------PDIYNILLQVMDYATLTDNNGRKADFRNVI 596 (731)
T ss_pred cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC--------------HHHHHHHHHhhccCeeecCCCcccCCCCCE
Confidence 211 1112234444455666899999999883 235566666665421 123578
Q ss_pred EEEecCCcc-------------------------cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC-------CC
Q 005815 355 VIAATNRPE-------------------------ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK-------KL 402 (676)
Q Consensus 355 VIaaTN~~~-------------------------~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~-------~l 402 (676)
+|+|||... .+.|.++. |+|.+|.|.+.+.++..+|++..+... .+
T Consensus 597 ii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~ 674 (731)
T TIGR02639 597 LIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI 674 (731)
T ss_pred EEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999998631 14556665 999999999999999999998776531 11
Q ss_pred C---ccccHHHHHHh--CCCCcHHHHHHHHHHHH
Q 005815 403 D---KDVSLSVIATR--TPGFSGADLANLMNEAA 431 (676)
Q Consensus 403 ~---~d~dl~~La~~--t~G~sgadL~~lv~~A~ 431 (676)
. .+..++.|+.. .+.+..+.|+.+++.-.
T Consensus 675 ~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 675 KLELTDDAKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred eEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 1 12224555553 23444566666555444
No 143
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=8.4e-12 Score=134.27 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=135.3
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCEE--------
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFF-------- 276 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~p~i-------- 276 (676)
.|..|+|++++|..|.-.+ -+| ...+++|.|+||+|||++++++++.+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 5899999999998764322 122 13469999999999999999999876 33322
Q ss_pred -EEechh---H-------------HHHHhhhhhHHHH------------------HHHHHHhhCCCeEEEEcCCcccccc
Q 005815 277 -SLSGSE---F-------------IEMFVGVGASRVR------------------DLFNKAKANSPCLVFIDEIDAVGRQ 321 (676)
Q Consensus 277 -~is~s~---~-------------~~~~~g~~~~~vr------------------~lF~~A~~~~P~ILfIDEID~l~~~ 321 (676)
..+|.. + .+.-.+....++- .++.+| ...+|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~-- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLE-- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCC--
Confidence 011111 0 1100111111111 112112 23599999999983
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccC-----------CCCCCeEEEEecCCcc-cccccccCCCccceEEecCCCCH-HH
Q 005815 322 RGTGIGGGNDEREQTLNQLLTEMDGF-----------TGNSGVIVIAATNRPE-ILDSALHRPGRFDRQVSVGLPDI-RG 388 (676)
Q Consensus 322 r~~~~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~~~-~Ld~aLlrpGRfd~~I~v~~Pd~-~~ 388 (676)
. .++..|+..|+.- .....+++|+++|..+ .++++++. ||..++.++.|+. ++
T Consensus 145 ---------~---~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 145 ---------D---HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred ---------H---HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 2 2344455555321 1124588899988655 68899999 9999999999865 88
Q ss_pred HHHHHHHHhcCC-------------------------------CCCccc--cHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005815 389 REQILKVHSNNK-------------------------------KLDKDV--SLSVIATRTPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 389 R~~IL~~~l~~~-------------------------------~l~~d~--dl~~La~~t~G~sgadL~~lv~~A~~~A~ 435 (676)
|.+|++...... .+++.+ -+..++..+..-+.+--..+++.|...|+
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 888887742210 011111 02333444443355666688999999999
Q ss_pred HcCCCCCCHHHHHHHHHHHHc
Q 005815 436 RRGKANITLKEIDDSIDRIVA 456 (676)
Q Consensus 436 r~~~~~It~~di~~Ai~~v~~ 456 (676)
.+|+..|+.+|++.+..-++.
T Consensus 291 l~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 291 FEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred HcCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999877654
No 144
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.37 E-value=8.9e-13 Score=145.40 Aligned_cols=214 Identities=27% Similarity=0.406 Sum_probs=142.5
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFI 284 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~ 284 (676)
+...+|+||+|...+..++.+.+..+.. .+..|||.|.+||||.++|+++.+.. +.||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAK----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcC----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3457899999999998888877765433 34579999999999999999998765 7899999998765
Q ss_pred HHHh-----hh------hhHH--HHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc--cCCC
Q 005815 285 EMFV-----GV------GASR--VRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFTG 349 (676)
Q Consensus 285 ~~~~-----g~------~~~~--vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld--~~~~ 349 (676)
+... |. ++.+ -..+|+.|... -||+|||..+- ...+.-+-..|++-+ ..-+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp-----------l~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP-----------LPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC-----------HHHHHHHHHHHhhceEEecCC
Confidence 4321 21 2222 45667666544 99999998882 233333444444311 1111
Q ss_pred ----CCCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH--------HHHHHhcCCC-----CCcc
Q 005815 350 ----NSGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ--------ILKVHSNNKK-----LDKD 405 (676)
Q Consensus 350 ----~~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~--------IL~~~l~~~~-----l~~d 405 (676)
.-+|.||+|||+.- - .+...|+|.. ++.+..|+..+|.+ ++..+.++.+ ++++
T Consensus 375 t~~~~vDVRIIAATN~nL--~-~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRNL--E-KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcCH--H-HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 22589999999752 1 2333455533 77888899999964 2222222221 3333
Q ss_pred ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH-HHH
Q 005815 406 VSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEID-DSI 451 (676)
Q Consensus 406 ~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~-~Ai 451 (676)
. +..|.+..|.-+.++|+|++.++...+ .....|+.+|+. .++
T Consensus 452 a-~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l 495 (560)
T COG3829 452 A-LALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFAL 495 (560)
T ss_pred H-HHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcchhhh
Confidence 3 666777777679999999999999754 334558888887 444
No 145
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.36 E-value=1.9e-12 Score=146.95 Aligned_cols=264 Identities=21% Similarity=0.268 Sum_probs=155.5
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh-----------cCCCEEEEe
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE-----------AGVPFFSLS 279 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e-----------~~~p~i~is 279 (676)
.+|++++|...+.+.+.+.+..+... +..|||+|++||||+++|+++... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 57999999999999888887654332 346999999999999999999876 467999999
Q ss_pred chhHHHHH-----hhhh------h--HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc-
Q 005815 280 GSEFIEMF-----VGVG------A--SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD- 345 (676)
Q Consensus 280 ~s~~~~~~-----~g~~------~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld- 345 (676)
|..+.+.. .|.. + ..-..+|+.|. ...||||||+.+. ...+..+..+|.+-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMP-----------LPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCC-----------HHHHHHHHhhhhcCeE
Confidence 98764321 1210 0 01123555553 2499999999993 233333333333211
Q ss_pred -cCCC----CCCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcC----C--CCC
Q 005815 346 -GFTG----NSGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSNN----K--KLD 403 (676)
Q Consensus 346 -~~~~----~~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~~----~--~l~ 403 (676)
.... ..++.+|++||..- . .+...|+|.. .+.+..|...+|.+ ++++++.. . .+.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L--~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDL--E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EecCCCceeccceEEEEecCCCH--H-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 0001 22468999988642 1 2223344432 56777899988864 33444432 1 222
Q ss_pred cccc------HHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCCcc-ccccchhhhHHHH
Q 005815 404 KDVS------LSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTKM-TDGKNKILVAYHE 476 (676)
Q Consensus 404 ~d~d------l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~~~-~~~~~~~~~A~hE 476 (676)
++.- +..|....+.-|.++|++++++++..+.......|+.+++................ ..+++...-++++
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~Er~~I~~~L~~ 508 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQLLLPELARESAKTPAPRLLAATLQQALER 508 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhhhhcccccccccccchhHHHHHHHHHHHHH
Confidence 2210 24556666767899999999999886533333567777764321111000000000 0122223344455
Q ss_pred HH--HHHHHHhCCCCCCCceeeeccCCCccc
Q 005815 477 IG--HAVCATLTPGHDPVQKVTLIPRGQARG 505 (676)
Q Consensus 477 ag--hal~a~~l~~~~~v~~vti~~r~~~~G 505 (676)
.+ +.-+|..|+ |++.|++.+.+.+|
T Consensus 509 ~~Gn~~~aA~~LG----IsRtTL~RkLk~~g 535 (538)
T PRK15424 509 FNGDKTAAANYLG----ISRTTLWRRLKAEA 535 (538)
T ss_pred hCCCHHHHHHHhC----CCHHHHHHHHHHhC
Confidence 54 555666776 77888888766554
No 146
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.33 E-value=2.5e-11 Score=136.74 Aligned_cols=215 Identities=21% Similarity=0.308 Sum_probs=138.6
Q ss_pred cccccccCCCCCcccccccchhhHHHHHHHHHHhcChh--HHh----hh------------------CCCC-CCeEEEEc
Q 005815 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPE--KFA----AV------------------GAKI-PKGVLLVG 254 (676)
Q Consensus 200 ~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~--~~~----~~------------------g~~~-p~gvLL~G 254 (676)
..++|++++.+..|.|+.|.+.+-..+ +.||+.|. .|. ++ ..++ .+-+||+|
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~---L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~G 333 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRM---LGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCG 333 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHH---HHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeec
Confidence 456999999999999999998876644 34444332 111 11 1112 24489999
Q ss_pred CCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHH-H---hhCCCeEEEEcCCccccccCCCCCCCCC
Q 005815 255 PPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNK-A---KANSPCLVFIDEIDAVGRQRGTGIGGGN 330 (676)
Q Consensus 255 PpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~-A---~~~~P~ILfIDEID~l~~~r~~~~~~~~ 330 (676)
|||.|||+||+.+|+++|..++.+++|+-... ....+++..+... . ....|..|+|||||.--
T Consensus 334 ppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----------- 400 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----------- 400 (877)
T ss_pred CCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------
Confidence 99999999999999999999999999984432 1112222222221 1 12578999999998752
Q ss_pred hHHHHHHHHHHHHhc-------cCCC---------CC---CeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHH
Q 005815 331 DEREQTLNQLLTEMD-------GFTG---------NS---GVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQ 391 (676)
Q Consensus 331 ~~~~~~l~~LL~~ld-------~~~~---------~~---~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~ 391 (676)
...++.++..+. |-.. +. .-.|||.||..-. |+|+.---|...|.|.+|...-..+
T Consensus 401 ---~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~ 475 (877)
T KOG1969|consen 401 ---RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVE 475 (877)
T ss_pred ---HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHH
Confidence 123333333332 1110 00 1357888886543 5663322588899999998888788
Q ss_pred HHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 005815 392 ILKVHSNNKKLDKD-VSLSVIATRTPGFSGADLANLMNEAAILAGRRGK 439 (676)
Q Consensus 392 IL~~~l~~~~l~~d-~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 439 (676)
-|+..+.+.++..+ -.+..|++.| ..||++.+|....++.+..+
T Consensus 476 RL~~IC~rE~mr~d~~aL~~L~el~----~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 476 RLNEICHRENMRADSKALNALCELT----QNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHh----cchHHHHHHHHHHHHHhccc
Confidence 88887777665433 1245555544 45999999999988865433
No 147
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.32 E-value=1.4e-11 Score=143.40 Aligned_cols=212 Identities=21% Similarity=0.305 Sum_probs=136.4
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc--------------------
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 271 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-------------------- 271 (676)
.|.+|+|++.++..|.-.. .++. ..||||.||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5889999999987664322 1221 2469999999999999999999877
Q ss_pred ---------------CCCEEEEechhHHHHHhhhh--hHHH--------HHHHHHHhhCCCeEEEEcCCccccccCCCCC
Q 005815 272 ---------------GVPFFSLSGSEFIEMFVGVG--ASRV--------RDLFNKAKANSPCLVFIDEIDAVGRQRGTGI 326 (676)
Q Consensus 272 ---------------~~p~i~is~s~~~~~~~g~~--~~~v--------r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 326 (676)
..||+.+.++......+|.. ...+ ..++..| ...|||||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC-------
Confidence 35677665544333333321 0000 1111111 22599999999993
Q ss_pred CCCChHHHHHHHHHHHHhccC-----------CCCCCeEEEEecCCcc-cccccccCCCccceEEecCCCC-HHHHHHHH
Q 005815 327 GGGNDEREQTLNQLLTEMDGF-----------TGNSGVIVIAATNRPE-ILDSALHRPGRFDRQVSVGLPD-IRGREQIL 393 (676)
Q Consensus 327 ~~~~~~~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~~~-~Ld~aLlrpGRfd~~I~v~~Pd-~~~R~~IL 393 (676)
..+++.|+..|+.- ....++++|+++|..+ .+.++|+. ||+.+|.++.|. .+++.+++
T Consensus 140 -------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 140 -------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred -------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 23455666666421 1123589999999643 57888998 999999998764 57777777
Q ss_pred HHHhcC-------------------------------CCCCccccHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHcCC
Q 005815 394 KVHSNN-------------------------------KKLDKDVSLSVIATRT--PGF-SGADLANLMNEAAILAGRRGK 439 (676)
Q Consensus 394 ~~~l~~-------------------------------~~l~~d~dl~~La~~t--~G~-sgadL~~lv~~A~~~A~r~~~ 439 (676)
+..... ..+++ ..+..++..+ .|. +.+-...+++-|...|..+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~-~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr 289 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISD-SLIRFISELCIEFGVDGHRADIVMARAARALAALDGR 289 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 643210 01111 1123333322 233 344555788999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 005815 440 ANITLKEIDDSIDRIV 455 (676)
Q Consensus 440 ~~It~~di~~Ai~~v~ 455 (676)
..|+.+|+..|+.-++
T Consensus 290 ~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 290 RRVTAEDVREAAELVL 305 (633)
T ss_pred CcCCHHHHHHHHHHHh
Confidence 9999999999988776
No 148
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=3.3e-11 Score=111.35 Aligned_cols=120 Identities=46% Similarity=0.672 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhhhhHH---HHHHHHHHhhCCCeEEEEcCCccccc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGVGASR---VRDLFNKAKANSPCLVFIDEIDAVGR 320 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~~~~~---vr~lF~~A~~~~P~ILfIDEID~l~~ 320 (676)
.++++++||||+|||++++.+++.+ +.+++.+++.++........... ....+.......+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4579999999999999999999998 89999999988765433222111 12223344556789999999998721
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhccCCC----CCCeEEEEecCCcc--cccccccCCCccceEEecC
Q 005815 321 QRGTGIGGGNDEREQTLNQLLTEMDGFTG----NSGVIVIAATNRPE--ILDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 321 ~r~~~~~~~~~~~~~~l~~LL~~ld~~~~----~~~ViVIaaTN~~~--~Ld~aLlrpGRfd~~I~v~ 382 (676)
.. ...++..+..... ..++.+|+++|... .+++.+.. ||+.++.++
T Consensus 99 -----------~~---~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 -----------GA---QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -----------HH---HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 11 2233333332222 35688899998776 67777776 998777765
No 149
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.30 E-value=1.1e-11 Score=140.73 Aligned_cols=214 Identities=23% Similarity=0.300 Sum_probs=134.0
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM 286 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~ 286 (676)
..+|++++|...+.+.+.+.+..+... +..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 367999999999999888877654332 3469999999999999999998754 679999999866432
Q ss_pred H-----hhhh------h--HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc--cCCC--
Q 005815 287 F-----VGVG------A--SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFTG-- 349 (676)
Q Consensus 287 ~-----~g~~------~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld--~~~~-- 349 (676)
. .|.. + .....+|+.|. ...||||||+.+. ...+..+..+|.+-. ....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCC-----------HHHHHHHHHHHhcCcEEecCCCc
Confidence 1 1210 0 01223555543 3499999999993 233333334443211 0011
Q ss_pred --CCCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcCC------CCCccccHHH
Q 005815 350 --NSGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSNNK------KLDKDVSLSV 410 (676)
Q Consensus 350 --~~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~~~------~l~~d~dl~~ 410 (676)
..++.+|++||..-. .+...|+|.. .+.+..|+..+|.+ ++.+++... .++++. +..
T Consensus 344 ~~~~dvRiIaat~~~l~---~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a-~~~ 419 (526)
T TIGR02329 344 PVPVDVRVVAATHCALT---TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA-AQV 419 (526)
T ss_pred eeeecceEEeccCCCHH---HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-HHH
Confidence 124678998886521 1222333332 45677788888864 333443321 222222 333
Q ss_pred -------HHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 411 -------IATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 411 -------La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
|....+.-|.++|++++.++...+.......|+.+++....
T Consensus 420 ~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 420 LAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 66777777899999999999877533334678888875443
No 150
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.29 E-value=1.6e-10 Score=120.96 Aligned_cols=217 Identities=20% Similarity=0.260 Sum_probs=138.5
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEech----
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGS---- 281 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s---- 281 (676)
--+|++.+++.|..+.+.+..|.. ..+.++||+|++|.|||++++.++... .+|++.+...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 358999999999999988888753 335579999999999999999998755 3588877542
Q ss_pred --hHHHHHh---hh-------hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC
Q 005815 282 --EFIEMFV---GV-------GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG 349 (676)
Q Consensus 282 --~~~~~~~---g~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~ 349 (676)
.|..... |. ..+.-.......+...+.+|+|||++.+.. +.......++|.|-.....+
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa-------Gs~~~qr~~Ln~LK~L~NeL-- 179 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA-------GSYRKQREFLNALKFLGNEL-- 179 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc-------ccHHHHHHHHHHHHHHhhcc--
Confidence 2222111 10 111222334455667788999999999852 12223333444332221111
Q ss_pred CCCeEEEEecCCcc--cccccccCCCccceEEecCCC-CHHHHHHHHHHHhcCCCCC------ccccHHHHHHhCCCCcH
Q 005815 350 NSGVIVIAATNRPE--ILDSALHRPGRFDRQVSVGLP-DIRGREQILKVHSNNKKLD------KDVSLSVIATRTPGFSG 420 (676)
Q Consensus 350 ~~~ViVIaaTN~~~--~Ld~aLlrpGRfd~~I~v~~P-d~~~R~~IL~~~l~~~~l~------~d~dl~~La~~t~G~sg 420 (676)
+-.++.+|+..-.. .-|+.+.+ ||+. +.++.- .-++...++..+-...++. ...-...|-..+.|..
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i- 255 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI- 255 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-
Confidence 22345555433222 24677777 9964 444432 3345566776665544432 2222356777888865
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 421 ADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 421 adL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
+++.++++.|+..|.+.|.+.||.+.|+..
T Consensus 256 G~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 256 GELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 589999999999999999999999998764
No 151
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.28 E-value=1.2e-11 Score=131.36 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=100.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH--HhhhhhH------H----HHHHHHHHhhCCCeEEEEcC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM--FVGVGAS------R----VRDLFNKAKANSPCLVFIDE 314 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~--~~g~~~~------~----vr~lF~~A~~~~P~ILfIDE 314 (676)
.+.|||.||||||||++++.+|.+++.|++.++++..... .+|...- . ....+..|. ..+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 4569999999999999999999999999999988766544 3343110 0 112333443 3468999999
Q ss_pred CccccccCCCCCCCCChHHHHHHHHHHHH-----hc----cCCCCCCeEEEEecCCcc------------cccccccCCC
Q 005815 315 IDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MD----GFTGNSGVIVIAATNRPE------------ILDSALHRPG 373 (676)
Q Consensus 315 ID~l~~~r~~~~~~~~~~~~~~l~~LL~~-----ld----~~~~~~~ViVIaaTN~~~------------~Ld~aLlrpG 373 (676)
+|.. .......++.+|+. +. .+..+.++.||+|+|..+ .++.+++.
T Consensus 143 in~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987 23345566666653 11 122345689999999865 26788888
Q ss_pred ccceEEecCCCCHHHHHHHHHHHhc
Q 005815 374 RFDRQVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 374 Rfd~~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
||-.++.+..|+.++-.+|+.....
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999987653
No 152
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.28 E-value=2e-11 Score=142.78 Aligned_cols=262 Identities=22% Similarity=0.296 Sum_probs=158.1
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH-
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE- 285 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~- 285 (676)
..+|++++|.+.+.+.+.+.+..+... ...|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 457999999999888777766654322 3359999999999999999998765 57999999976532
Q ss_pred ----HHhhhh--h--HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc--CCC----CC
Q 005815 286 ----MFVGVG--A--SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FTG----NS 351 (676)
Q Consensus 286 ----~~~g~~--~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~--~~~----~~ 351 (676)
.+.|.. . ......|+.| ...+||||||+.+. ...+..+-.++..-.- ... .-
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 222211 0 0011123333 34699999999993 2333333344432110 001 11
Q ss_pred CeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcC--------CCCCccccHHHHH
Q 005815 352 GVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSNN--------KKLDKDVSLSVIA 412 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~~--------~~l~~d~dl~~La 412 (676)
++.+|++|+..- ..+...|+|.. .+.+..|...+|.+ ++++++.. ..++++ .+..|.
T Consensus 457 ~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~~~L~ 532 (638)
T PRK11388 457 DVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-ALARLV 532 (638)
T ss_pred eEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HHHHHH
Confidence 477899988642 12222344421 56777799888853 33333321 123333 377788
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCc--CCCc------cc-cccchhhhHHHHHH--HHH
Q 005815 413 TRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGM--EGTK------MT-DGKNKILVAYHEIG--HAV 481 (676)
Q Consensus 413 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~--~~~~------~~-~~~~~~~~A~hEag--hal 481 (676)
...+.-+.++|+++++.|...+ ....|+.+|+...+..-.... .... +. .++....-++++.+ ..-
T Consensus 533 ~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~l~~~E~~~i~~al~~~~gn~~~ 609 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHLFTEQATDDVSATRLSTSLSLAELEKEAIINAAQVCGGRIQE 609 (638)
T ss_pred cCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhhhcccccccccccccccchhHHHHHHHHHHHHHHHhCCCHHH
Confidence 8887779999999999988654 445799999887663211100 0001 11 11222334455544 455
Q ss_pred HHHhCCCCCCCceeeeccCCCccce
Q 005815 482 CATLTPGHDPVQKVTLIPRGQARGL 506 (676)
Q Consensus 482 ~a~~l~~~~~v~~vti~~r~~~~G~ 506 (676)
+|..|+ |.+.|++.+.+.+|.
T Consensus 610 aA~~LG----isR~TLyrklk~~~i 630 (638)
T PRK11388 610 MAALLG----IGRTTLWRKMKQHGI 630 (638)
T ss_pred HHHHHC----CCHHHHHHHHHHcCC
Confidence 677776 788999988877775
No 153
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.27 E-value=1e-10 Score=132.06 Aligned_cols=210 Identities=23% Similarity=0.320 Sum_probs=129.9
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc------------------
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------------------ 271 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~------------------ 271 (676)
...|+||.|++.+++.+.-.+ .....++|.||||||||++++++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 358999999999877665322 122469999999999999999998643
Q ss_pred ----------CCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHH
Q 005815 272 ----------GVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLL 341 (676)
Q Consensus 272 ----------~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL 341 (676)
..||...+++......+|.+...-...+..|. ..+|||||++.+. .. ++..|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~-----------~~---~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFK-----------RS---VLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCC-----------HH---HHHHHH
Confidence 12344333332222223322211223344442 3599999999883 22 334444
Q ss_pred HHhccCC-----------CCCCeEEEEecCCc------c-----------------cccccccCCCccceEEecCCCCHH
Q 005815 342 TEMDGFT-----------GNSGVIVIAATNRP------E-----------------ILDSALHRPGRFDRQVSVGLPDIR 387 (676)
Q Consensus 342 ~~ld~~~-----------~~~~ViVIaaTN~~------~-----------------~Ld~aLlrpGRfd~~I~v~~Pd~~ 387 (676)
..|+... -..++.+|+++|.. + .+...|+. |||.++.++.++..
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 4443211 12468999999963 1 36777888 99999999876543
Q ss_pred H-------------HHHHHHH------HhcCC---CCCccccH-------------HH---HHHhCCCCcHHHHHHHHHH
Q 005815 388 G-------------REQILKV------HSNNK---KLDKDVSL-------------SV---IATRTPGFSGADLANLMNE 429 (676)
Q Consensus 388 ~-------------R~~IL~~------~l~~~---~l~~d~dl-------------~~---La~~t~G~sgadL~~lv~~ 429 (676)
+ |.++.+. .++.. .+...+.. .. -+....++|.+....+++-
T Consensus 395 ~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrv 474 (499)
T TIGR00368 395 KLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKV 474 (499)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 2 2222221 11111 11111111 11 1222346899999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHH
Q 005815 430 AAILAGRRGKANITLKEIDDSID 452 (676)
Q Consensus 430 A~~~A~r~~~~~It~~di~~Ai~ 452 (676)
|..+|.-++.+.|+.+|+.+|+.
T Consensus 475 ArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 475 ARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999999974
No 154
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.9e-10 Score=124.78 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=124.7
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------CEEEE--
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSL-- 278 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------p~i~i-- 278 (676)
..+..|++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4677899999999999988876642 245778999999999999999999998754 11100
Q ss_pred --echhHHHH--------H-h-------------hhhhHHHHHHHHHHh----hCCCeEEEEcCCccccccCCCCCCCCC
Q 005815 279 --SGSEFIEM--------F-V-------------GVGASRVRDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGIGGGN 330 (676)
Q Consensus 279 --s~s~~~~~--------~-~-------------g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~ 330 (676)
.|...... + + .-+.+.+|.+.+... .....|++|||+|.+.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 11111000 0 0 001233444433322 2345699999999993
Q ss_pred hHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHH
Q 005815 331 DEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSV 410 (676)
Q Consensus 331 ~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~ 410 (676)
....|.||..++.... +.++|..|+.++.+.|.+++ |+ ..+.+++|+.++-.++++.......+++ ..+..
T Consensus 155 ---~~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~~-~~~~~ 225 (351)
T PRK09112 155 ---RNAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSDG-EITEA 225 (351)
T ss_pred ---HHHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCCH-HHHHH
Confidence 3356778888886443 44555556778888888887 88 6999999999999999987433222222 22566
Q ss_pred HHHhCCCCcHHHHHHHHH
Q 005815 411 IATRTPGFSGADLANLMN 428 (676)
Q Consensus 411 La~~t~G~sgadL~~lv~ 428 (676)
+++.+.| +++...++++
T Consensus 226 i~~~s~G-~pr~Al~ll~ 242 (351)
T PRK09112 226 LLQRSKG-SVRKALLLLN 242 (351)
T ss_pred HHHHcCC-CHHHHHHHHh
Confidence 7777766 4544444443
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.24 E-value=1.5e-10 Score=138.55 Aligned_cols=195 Identities=21% Similarity=0.294 Sum_probs=125.1
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH---
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM--- 286 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~g-vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~--- 286 (676)
+.|+|++++.+.+.+.+...+..-. ....|.| +||+||||+|||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 3488999998888877765321100 0123555 8999999999999999999988 458999999998654
Q ss_pred ---------HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC---------
Q 005815 287 ---------FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT--------- 348 (676)
Q Consensus 287 ---------~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~--------- 348 (676)
|+|..... .+.+..+.+..+||+|||||... + .+.+.|+..+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~-----------~---~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAH-----------P---DVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcC-----------H---HHHHHHHHHhhcceeecCCCcEE
Confidence 33332211 23344455677999999998762 2 34555555554321
Q ss_pred CCCCeEEEEecCCccc-----------------------------ccccccCCCccceEEecCCCCHHHHHHHHHHHhcC
Q 005815 349 GNSGVIVIAATNRPEI-----------------------------LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN 399 (676)
Q Consensus 349 ~~~~ViVIaaTN~~~~-----------------------------Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~ 399 (676)
.-.+.++|.|||.... +.|+++. |++ .|.|.+.+.++..+|+...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 0135789999885211 3455666 897 8899999999999998776543
Q ss_pred C--------CCC---ccccHHHHHHhCCC--CcHHHHHHHHHHHH
Q 005815 400 K--------KLD---KDVSLSVIATRTPG--FSGADLANLMNEAA 431 (676)
Q Consensus 400 ~--------~l~---~d~dl~~La~~t~G--~sgadL~~lv~~A~ 431 (676)
. ++. ++.....|+....+ +-.+.|.++++.-.
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 1 211 12224556665532 34566666655433
No 156
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.24 E-value=5.8e-11 Score=135.45 Aligned_cols=208 Identities=23% Similarity=0.324 Sum_probs=129.7
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFI 284 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~ 284 (676)
....+|++++|.....+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|+.+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3567899999999987777666654322 23459999999999999999986654 5799999998764
Q ss_pred HHH-----hhhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC---
Q 005815 285 EMF-----VGVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG--- 349 (676)
Q Consensus 285 ~~~-----~g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~--- 349 (676)
+.. .|... .....+|+.|. ...|||||||.+. ...+..+-.++..- .+..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~-~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS-----------PRMQAKLLRFLNDG-TFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC-----------HHHHHHHHHHHhcC-CcccCCC
Confidence 321 12111 11123455543 3589999999993 23333444444321 0111
Q ss_pred ----CCCeEEEEecCCcc-c------ccccccCCCccceEEecCCCCHHHHHH----HHHHH----hcCC-----CCCcc
Q 005815 350 ----NSGVIVIAATNRPE-I------LDSALHRPGRFDRQVSVGLPDIRGREQ----ILKVH----SNNK-----KLDKD 405 (676)
Q Consensus 350 ----~~~ViVIaaTN~~~-~------Ld~aLlrpGRfd~~I~v~~Pd~~~R~~----IL~~~----l~~~-----~l~~d 405 (676)
..++.||++|+.+- . +.+.|.. |+. .+.+..|+..+|.+ +++++ ..+. .++++
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 23578888887642 1 2223333 443 46777788888863 22222 2222 23333
Q ss_pred ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 005815 406 VSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEI 447 (676)
Q Consensus 406 ~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di 447 (676)
. +..|....+.-+.++|++++..|...+ ....|+.+|+
T Consensus 410 a-~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 410 L-NTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred H-HHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 2 667777767678899999999888654 4567888885
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=1.8e-10 Score=138.56 Aligned_cols=202 Identities=20% Similarity=0.270 Sum_probs=128.4
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH---
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF--- 287 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~--- 287 (676)
+.|+|++.+.+.+.+.+......-. ...++...+||+||||||||++|+++|..+ +.+++.++++++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4589999999988887765321100 001222358999999999999999999987 5689999998875432
Q ss_pred --hhhhh-----HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC--C-------CCC
Q 005815 288 --VGVGA-----SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--T-------GNS 351 (676)
Q Consensus 288 --~g~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~--~-------~~~ 351 (676)
.|... .....+....+.+.-+|||||||+.+. . .+.+.|+..++.- . .-.
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-----------~---~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-----------P---DVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-----------H---HHHHHHHHHHhcCceecCCCeEEecC
Confidence 11110 011223333444555799999999873 2 3455555555421 1 123
Q ss_pred CeEEEEecCCccc-------------------------ccccccCCCccceEEecCCCCHHHHHHHHHHHhcC-------
Q 005815 352 GVIVIAATNRPEI-------------------------LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN------- 399 (676)
Q Consensus 352 ~ViVIaaTN~~~~-------------------------Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~------- 399 (676)
+.+||+|||.... +.|.|+. |+|.++.|.+++.++..+|+...+..
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~ 785 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAE 785 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999997221 2345555 99999999999999999988766532
Q ss_pred CCCC---ccccHHHHHHhCC--CCcHHHHHHHHHHHHHHH
Q 005815 400 KKLD---KDVSLSVIATRTP--GFSGADLANLMNEAAILA 434 (676)
Q Consensus 400 ~~l~---~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A 434 (676)
..+. .+..+..|++... .+..+.|+++++......
T Consensus 786 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 786 RKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred CCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 1111 1222556666533 566777877777665433
No 158
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=7.1e-10 Score=115.46 Aligned_cols=190 Identities=17% Similarity=0.211 Sum_probs=118.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC-CEEE--E-----echhHHHHH---hhhh---h------HHHHHHH-HHHhhCCC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV-PFFS--L-----SGSEFIEMF---VGVG---A------SRVRDLF-NKAKANSP 307 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~-p~i~--i-----s~s~~~~~~---~g~~---~------~~vr~lF-~~A~~~~P 307 (676)
-++|+||+|+|||++++.+++++.. .+.. + +..++.... .|.. . ..+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 2221 1 112222111 1211 0 1122222 22345677
Q ss_pred eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC--Cccccc-c---cccCCCccceEEec
Q 005815 308 CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN--RPEILD-S---ALHRPGRFDRQVSV 381 (676)
Q Consensus 308 ~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN--~~~~Ld-~---aLlrpGRfd~~I~v 381 (676)
.+|+|||+|.+. ......+..+..... .....+.|+.+.. ..+.+. + .+.+ |+...+.+
T Consensus 125 ~vliiDe~~~l~-----------~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNLT-----------PELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccCC-----------HHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 899999999983 112222332222211 1122233333322 122221 1 2334 77778899
Q ss_pred CCCCHHHHHHHHHHHhcCCCC-----CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 382 GLPDIRGREQILKVHSNNKKL-----DKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 382 ~~Pd~~~R~~IL~~~l~~~~l-----~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
++.+.++..+++...+...+. -.+..+..|.+.+.|. ++.|..+++.+...|..++...|+.++++.++..+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999888754321 1234578899999986 56699999999999999999999999999999765
No 159
>PHA02244 ATPase-like protein
Probab=99.23 E-value=2.9e-10 Score=122.29 Aligned_cols=155 Identities=23% Similarity=0.269 Sum_probs=94.4
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhh-
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGV- 290 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~- 290 (676)
.+..+.+..........+..++.. ...|||+||||||||++|+++|..++.||+.++...-.....|.
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i 163 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI 163 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc
Confidence 333344444444555555444433 33599999999999999999999999999999843110011110
Q ss_pred -hhHHHH-HHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHH-----hc-cCCCCCCeEEEEecCCc
Q 005815 291 -GASRVR-DLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MD-GFTGNSGVIVIAATNRP 362 (676)
Q Consensus 291 -~~~~vr-~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~-----ld-~~~~~~~ViVIaaTN~~ 362 (676)
....+. .-|-.|. ....+|+|||++.+. ......++.++.. .+ .+....++.+|+|+|.+
T Consensus 164 ~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~-----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~ 231 (383)
T PHA02244 164 DANGKFHETPFYEAF-KKGGLFFIDEIDASI-----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTL 231 (383)
T ss_pred cccccccchHHHHHh-hcCCEEEEeCcCcCC-----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCC
Confidence 000111 1222332 335799999999883 2334445555432 11 11224578999999973
Q ss_pred -----------ccccccccCCCccceEEecCCCCHHHHHHHH
Q 005815 363 -----------EILDSALHRPGRFDRQVSVGLPDIRGREQIL 393 (676)
Q Consensus 363 -----------~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL 393 (676)
..++++++. || ..|+++.|+. ....|.
T Consensus 232 ~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 232 GKGADHIYVARNKIDGATLD--RF-APIEFDYDEK-IEHLIS 269 (383)
T ss_pred ccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH-HHHHHh
Confidence 467899999 99 5799999983 333444
No 160
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.21 E-value=4.3e-11 Score=137.22 Aligned_cols=208 Identities=24% Similarity=0.327 Sum_probs=131.6
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFI 284 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~ 284 (676)
....+|++++|...+.+.+.+.+..+... ...|||+|++||||+++|+++.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARS----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34568999999999988888877765432 3469999999999999999998875 5799999998764
Q ss_pred HHHh-----hhhhH-------HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc--CCC-
Q 005815 285 EMFV-----GVGAS-------RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FTG- 349 (676)
Q Consensus 285 ~~~~-----g~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~--~~~- 349 (676)
+... |.... .....|+.+ ...+|||||||.+. ...+ ..|+..++. +..
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-----------~~~Q---~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-----------PAFQ---AKLLRVLQEGEFERV 322 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-----------HHHH---HHHHHHHhcCcEEEC
Confidence 3211 11000 001123333 24599999999993 2233 344444432 111
Q ss_pred ------CCCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcC--------CCCCc
Q 005815 350 ------NSGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSNN--------KKLDK 404 (676)
Q Consensus 350 ------~~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~~--------~~l~~ 404 (676)
..++.+|++|+..- . .+...|+|.. .+.+..|...+|.+ ++++++.. ..+++
T Consensus 323 ~~~~~~~~~~riI~~s~~~l--~-~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~ 399 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDL--E-EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITP 399 (534)
T ss_pred CCCceEeecEEEEEeCCCCH--H-HHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 12478888887542 1 1222344422 44566677777643 34444332 12333
Q ss_pred cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 005815 405 DVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDD 449 (676)
Q Consensus 405 d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~ 449 (676)
+ .+..|....+.-|.++|+++++.|+..+ ....|+.+|+..
T Consensus 400 ~-a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 400 S-AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred H-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 3 3677888877779999999999988654 456888888754
No 161
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3.9e-10 Score=122.95 Aligned_cols=185 Identities=16% Similarity=0.162 Sum_probs=123.6
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCE-------E----
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F---- 276 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~-------i---- 276 (676)
..+.++++|+|++.+++.|.+.+.. .+.|.++||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4677999999999999999876653 35677899999999999999999999762210 0
Q ss_pred ----EEechhHHHH---------Hh-----h--------hhhHHHHHHHHHHh----hCCCeEEEEcCCccccccCCCCC
Q 005815 277 ----SLSGSEFIEM---------FV-----G--------VGASRVRDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGI 326 (676)
Q Consensus 277 ----~is~s~~~~~---------~~-----g--------~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~ 326 (676)
.-.|...... ++ + -..+.+|++.+.+. ...|.|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 0011110000 00 0 01234565554432 3467899999999983
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccc
Q 005815 327 GGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDV 406 (676)
Q Consensus 327 ~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~ 406 (676)
....|.||..++... .+.++|.+|+.++.+.+.+++ |+ ..+.+++|+.++-.+++...... ..+.
T Consensus 155 -------~~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~ 219 (365)
T PRK07471 155 -------ANAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDD 219 (365)
T ss_pred -------HHHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHH
Confidence 346778888887543 446777788888888888877 76 68999999999999988876422 1122
Q ss_pred cHHHHHHhCCCCcHHHHHHH
Q 005815 407 SLSVIATRTPGFSGADLANL 426 (676)
Q Consensus 407 dl~~La~~t~G~sgadL~~l 426 (676)
.+..++..+.| ++....++
T Consensus 220 ~~~~l~~~s~G-sp~~Al~l 238 (365)
T PRK07471 220 PRAALAALAEG-SVGRALRL 238 (365)
T ss_pred HHHHHHHHcCC-CHHHHHHH
Confidence 23566666766 44433333
No 162
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.20 E-value=1.1e-09 Score=109.94 Aligned_cols=167 Identities=23% Similarity=0.325 Sum_probs=121.5
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF 283 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~ 283 (676)
...++.+.+|+|++.+|+.|.+-...+... .+..+|||+|..|||||+|+||+-++. +..++.++-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 456699999999999999987766554322 234579999999999999999998877 677999998887
Q ss_pred HHHHhhhhhHHHHHHHHHHhhC-CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC--CCCeEEEEecC
Q 005815 284 IEMFVGVGASRVRDLFNKAKAN-SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG--NSGVIVIAATN 360 (676)
Q Consensus 284 ~~~~~g~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~--~~~ViVIaaTN 360 (676)
.. +-.+++..+.. ..-|||+|++-.= . . +.....|-..+||-.. ..+|++.+|+|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe---------~-g---d~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSFE---------E-G---DDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCCC---------C-C---chHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 53 44566665543 3469999997221 1 1 1223344455565432 45799999999
Q ss_pred Cccccccc--------------------ccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005815 361 RPEILDSA--------------------LHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD 403 (676)
Q Consensus 361 ~~~~Ld~a--------------------LlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~ 403 (676)
+.+.++.. +.-+.||...+.|.+++.++...|+.++++...++
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 87665421 11123999999999999999999999999877765
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.18 E-value=5.7e-10 Score=133.99 Aligned_cols=167 Identities=22% Similarity=0.306 Sum_probs=109.5
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH-
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF- 287 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~-gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~- 287 (676)
++.|+|++.+.+.+.+.+......-. ....|. .+||+||||||||++|+++|..+ +.+++.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 34589999999988888765431100 001233 48999999999999999999886 5689999999886532
Q ss_pred ----hhhhhH----HHHHHHHHH-hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC--C-------C
Q 005815 288 ----VGVGAS----RVRDLFNKA-KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--T-------G 349 (676)
Q Consensus 288 ----~g~~~~----~vr~lF~~A-~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~--~-------~ 349 (676)
+|.... .-...+..+ +....++|||||++.+. .. +.+.|+..++.- . .
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~-----------~~---v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH-----------PD---VFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----------HH---HHHHHHHHHhhCceecCCceEEe
Confidence 111000 001122333 33344899999999873 22 445555555421 1 1
Q ss_pred CCCeEEEEecCCcc-------------------------cccccccCCCccceEEecCCCCHHHHHHHHHHHhcC
Q 005815 350 NSGVIVIAATNRPE-------------------------ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN 399 (676)
Q Consensus 350 ~~~ViVIaaTN~~~-------------------------~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~ 399 (676)
-.+.++|+|||... .+.|+|+. |+|.++.+.+++.++..+|++.++..
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 12467899998621 13456776 99999999999999998888776643
No 164
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.18 E-value=9.1e-11 Score=129.65 Aligned_cols=207 Identities=25% Similarity=0.357 Sum_probs=137.7
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM 286 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~ 286 (676)
...+.+++|...+.+++.+.+..+...+ -.|||+|++||||-++||+|.... +.||+.+||..+.+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~----------a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSD----------ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCC----------CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 3568899999999999999998875543 369999999999999999998765 569999999866443
Q ss_pred -----Hhhhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc-----CCC
Q 005815 287 -----FVGVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FTG 349 (676)
Q Consensus 287 -----~~g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~-----~~~ 349 (676)
..|... .+-...|+.|.. ..||||||..+- -+ +...||.-++. .-+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mp-----------l~---~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMP-----------LE---LQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCC-----------HH---HHHHHHHHHHcCeeEecCC
Confidence 222211 112345666544 499999998883 22 33444444431 111
Q ss_pred ----CCCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhc----CCCC-C---ccc
Q 005815 350 ----NSGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSN----NKKL-D---KDV 406 (676)
Q Consensus 350 ----~~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~----~~~l-~---~d~ 406 (676)
+-+|.||++||.. |. .....|+|.. ++.+..|...+|.+ +++++++ ..+. . ...
T Consensus 270 ~~~i~vdvRiIaaT~~d--L~-~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~ 346 (464)
T COG2204 270 NKPIKVDVRIIAATNRD--LE-EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPE 346 (464)
T ss_pred CcccceeeEEEeecCcC--HH-HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 2258999999975 22 2333455532 78888999999975 3333332 2211 1 222
Q ss_pred cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 005815 407 SLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDD 449 (676)
Q Consensus 407 dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~ 449 (676)
.+..|....+--|.++|+|++.++...+ ....|+.+|+..
T Consensus 347 a~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~~ 386 (464)
T COG2204 347 ALAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLPL 386 (464)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhccc
Confidence 2566666666668889999988888766 456777777654
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.18 E-value=1.4e-10 Score=115.59 Aligned_cols=206 Identities=20% Similarity=0.288 Sum_probs=126.5
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-C----CCEEE
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G----VPFFS 277 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-~----~p~i~ 277 (676)
.|++++.+..++||+|+++..+.|+-+...-..| +++|.||||||||+-+.++|+++ | -.++.
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 3899999999999999999999887666532222 49999999999999999999987 3 24566
Q ss_pred EechhHHHHHhhhhhHHHH---HHHHHHhhCC----CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 278 LSGSEFIEMFVGVGASRVR---DLFNKAKANS----PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 278 is~s~~~~~~~g~~~~~vr---~lF~~A~~~~----P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
++.|+-. +-..+| ..|.+-+-.- ..||++||.|++- ...+|.+.. .|+-+...
T Consensus 84 LNASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRR---tMEiyS~t 143 (333)
T KOG0991|consen 84 LNASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRR---TMEIYSNT 143 (333)
T ss_pred ccCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHH---HHHHHccc
Confidence 7776532 122233 4565544332 2599999999993 223444433 34333333
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNE 429 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~ 429 (676)
..+..++|..+.+=+.+.+ |+. .+.+...+..+-..-+....+..++. .+.-++.+.-...| |+++.+|.
T Consensus 144 --tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 144 --TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred --chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHH
Confidence 3566777877776666666 553 33444444433333222233322222 22236666655554 77777776
Q ss_pred HHHHHHHcCCCCCCHHHHHHHH
Q 005815 430 AAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 430 A~~~A~r~~~~~It~~di~~Ai 451 (676)
.. +...+-..|+.+.+-..+
T Consensus 215 LQ--st~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 215 LQ--STVNGFGLVNQENVFKVC 234 (333)
T ss_pred HH--HHhccccccchhhhhhcc
Confidence 54 344566677777665544
No 166
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.17 E-value=2.1e-10 Score=123.56 Aligned_cols=194 Identities=22% Similarity=0.261 Sum_probs=121.5
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH--
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM-- 286 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~-- 286 (676)
-+++++|.....+.+.+.+..+.. .+..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 477899999988888887766532 23469999999999999999997654 579999999876322
Q ss_pred ---Hhhhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-------
Q 005815 287 ---FVGVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG------- 349 (676)
Q Consensus 287 ---~~g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~------- 349 (676)
+.|... ......|..|. ...|||||||.+. ...+..+..++..-. +..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~-~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP-----------MLVQEKLLRVIEYGE-LERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC-----------HHHHHHHHHHHhcCc-EEeCCCCcee
Confidence 112110 01122344432 3599999999993 233333333443211 111
Q ss_pred CCCeEEEEecCCcc-------cccccccCCCccceEEecCCCCHHHHHH----HHHHHh----cCC------CCCccccH
Q 005815 350 NSGVIVIAATNRPE-------ILDSALHRPGRFDRQVSVGLPDIRGREQ----ILKVHS----NNK------KLDKDVSL 408 (676)
Q Consensus 350 ~~~ViVIaaTN~~~-------~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~----IL~~~l----~~~------~l~~d~dl 408 (676)
..++.||++|+..- .+.+.|.. ||. .+.+..|+..+|.+ ++.+++ ... .++++ .+
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~-al 214 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTER-AR 214 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHH-HH
Confidence 12578888887631 23344444 553 34556688888854 333333 221 12233 36
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 409 SVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 409 ~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
..|....+--|.++|+++++.|...+
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 77778887779999999999988654
No 167
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.17 E-value=2.5e-10 Score=123.01 Aligned_cols=199 Identities=21% Similarity=0.264 Sum_probs=120.9
Q ss_pred cccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH-----
Q 005815 216 VAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF----- 287 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~----- 287 (676)
++|...+.+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 46777777777776665432 23469999999999999999997655 5799999997653321
Q ss_pred hhhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC-------CCCCe
Q 005815 288 VGVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-------GNSGV 353 (676)
Q Consensus 288 ~g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-------~~~~V 353 (676)
.|... ......|+.|. ..+|||||||.+. ...+..+..++..-. +. ...++
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~-----------~~~Q~~Ll~~l~~~~-~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATAS-----------LLVQEKLLRVIEYGE-FERVGGSQTLQVDV 135 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCC-----------HHHHHHHHHHHHcCc-EEecCCCceeccce
Confidence 11110 01122344443 4599999999993 233333333443211 11 12457
Q ss_pred EEEEecCCcc-------cccccccCCCccceEEecCCCCHHHHHH----HHHHHhc----C--C----CCCccccHHHHH
Q 005815 354 IVIAATNRPE-------ILDSALHRPGRFDRQVSVGLPDIRGREQ----ILKVHSN----N--K----KLDKDVSLSVIA 412 (676)
Q Consensus 354 iVIaaTN~~~-------~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~----IL~~~l~----~--~----~l~~d~dl~~La 412 (676)
.+|++||..- .+.+.|.. ||. .+.+..|+..+|.+ ++++++. . . .++++ .+..|.
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~~L~ 211 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-AREQLL 211 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHHHHH
Confidence 8999988541 12333433 442 45677788888854 3333322 1 1 23333 367788
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 005815 413 TRTPGFSGADLANLMNEAAILAGRRGKANITLKE 446 (676)
Q Consensus 413 ~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~d 446 (676)
...+.-|.++|++++..+...+ ....++.++
T Consensus 212 ~y~WPGNvrEL~n~i~~~~~~~---~~~~~~~~~ 242 (329)
T TIGR02974 212 EYHWPGNVRELKNVVERSVYRH---GLEEAPIDE 242 (329)
T ss_pred hCCCCchHHHHHHHHHHHHHhC---CCCccchhh
Confidence 8887778999999999888655 223455554
No 168
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.17 E-value=5.7e-10 Score=133.86 Aligned_cols=165 Identities=22% Similarity=0.280 Sum_probs=111.7
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH---
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM--- 286 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~-gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~--- 286 (676)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||+|+|||++|+++|..+ +.+++.+++++|.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4488999999988887754221100 012243 48999999999999999999987 468999999887532
Q ss_pred --Hhhhh-----hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC---------CC
Q 005815 287 --FVGVG-----ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT---------GN 350 (676)
Q Consensus 287 --~~g~~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~---------~~ 350 (676)
..|.. -.....+.+..+.+..+||+|||+|.+. ..+.+.|+..+|.-. .-
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~--------------~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH--------------PDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC--------------HHHHHHHHHHhccCceecCCCcEEec
Confidence 12211 0111234455555555899999999883 235666666666421 12
Q ss_pred CCeEEEEecCCccc-------------------------------------ccccccCCCccceEEecCCCCHHHHHHHH
Q 005815 351 SGVIVIAATNRPEI-------------------------------------LDSALHRPGRFDRQVSVGLPDIRGREQIL 393 (676)
Q Consensus 351 ~~ViVIaaTN~~~~-------------------------------------Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL 393 (676)
.+.++|+|||.... +.|.++. |+|.+|.|.+.+.++..+|+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHH
Confidence 46789999885321 1234555 99999999999999999998
Q ss_pred HHHhc
Q 005815 394 KVHSN 398 (676)
Q Consensus 394 ~~~l~ 398 (676)
+..+.
T Consensus 729 ~~~l~ 733 (821)
T CHL00095 729 EIMLK 733 (821)
T ss_pred HHHHH
Confidence 77664
No 169
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.17 E-value=1.4e-09 Score=111.41 Aligned_cols=130 Identities=23% Similarity=0.343 Sum_probs=89.1
Q ss_pred CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC-------------cccccccccCC
Q 005815 306 SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR-------------PEILDSALHRP 372 (676)
Q Consensus 306 ~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-------------~~~Ld~aLlrp 372 (676)
-|.+|||||++-|- -..+..|-..++.-- .-+||.+||+ |.-+++.|+.
T Consensus 296 vPGVLFIDEVhMLD--------------iEcFTyL~kalES~i---aPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD--------------IECFTYLHKALESPI---APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhhh--------------hHHHHHHHHHhcCCC---CceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 47899999988872 234444555554222 2356666665 3335566665
Q ss_pred CccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 373 GRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 373 GRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
|+ ..|..-+.+.++-++|++...+...+. .+..+..++.....-|-+-.-+++.-|..+|...++..|..+|+++.-
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 55 355666778888899999888766654 333467777766656667677888888899999999999999999886
Q ss_pred HHHH
Q 005815 452 DRIV 455 (676)
Q Consensus 452 ~~v~ 455 (676)
+-..
T Consensus 436 ~Lf~ 439 (456)
T KOG1942|consen 436 ELFL 439 (456)
T ss_pred HHHH
Confidence 5543
No 170
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.16 E-value=2.1e-10 Score=130.71 Aligned_cols=196 Identities=24% Similarity=0.301 Sum_probs=124.6
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH-
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF- 287 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~- 287 (676)
++.+++|.....+.+.+.+..+... +..|||+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6889999999998888887765332 3469999999999999999998864 5799999998764321
Q ss_pred ----hhhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc--cCC----CC
Q 005815 288 ----VGVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFT----GN 350 (676)
Q Consensus 288 ----~g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld--~~~----~~ 350 (676)
.|... ......|+.|. ...|||||||.+. ...+..+..++..-. ... ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 12100 00112344443 3589999999993 233333333333211 000 12
Q ss_pred CCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhc----C-----CCCCccccHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSN----N-----KKLDKDVSLSV 410 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~----~-----~~l~~d~dl~~ 410 (676)
.++.+|++||..-. .+...|+|.. .+.+..|+..+|.+ ++++++. + ..++++ .+..
T Consensus 321 ~~~RiI~~t~~~l~---~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~-a~~~ 396 (509)
T PRK05022 321 VDVRVIAATNRDLR---EEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA-AQAA 396 (509)
T ss_pred cceEEEEecCCCHH---HHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-HHHH
Confidence 35789999986421 1222233321 56677798888854 2233322 1 122333 3677
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHH
Q 005815 411 IATRTPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 411 La~~t~G~sgadL~~lv~~A~~~A~ 435 (676)
|....+.-|.++|+++++.|+..+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 8888887899999999999998773
No 171
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.15 E-value=5.8e-10 Score=120.25 Aligned_cols=133 Identities=32% Similarity=0.404 Sum_probs=87.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHH------HHHHh--hCCC--eEEEEcCCcc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDL------FNKAK--ANSP--CLVFIDEIDA 317 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~l------F~~A~--~~~P--~ILfIDEID~ 317 (676)
+.+||.||||||||++|+++|..++.+|+.+.|.......-..+....... |.... .... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 459999999999999999999999999999999765432211111111111 00000 0001 4999999988
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHhcc----------CCCCCCeEEEEecC-----CcccccccccCCCccceEEecC
Q 005815 318 VGRQRGTGIGGGNDEREQTLNQLLTEMDG----------FTGNSGVIVIAATN-----RPEILDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 318 l~~~r~~~~~~~~~~~~~~l~~LL~~ld~----------~~~~~~ViVIaaTN-----~~~~Ld~aLlrpGRfd~~I~v~ 382 (676)
.. .. +.+.|+..|+. +.-..+++||+|+| ....+++++++ ||-..+.++
T Consensus 124 a~-----------p~---~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~ 187 (329)
T COG0714 124 AP-----------PE---VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVD 187 (329)
T ss_pred CC-----------HH---HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecC
Confidence 73 23 45555555544 33346789999999 44458899999 998999999
Q ss_pred CCCHH-HHHHHHHHH
Q 005815 383 LPDIR-GREQILKVH 396 (676)
Q Consensus 383 ~Pd~~-~R~~IL~~~ 396 (676)
.|+.+ +...++...
T Consensus 188 yp~~~~e~~~i~~~~ 202 (329)
T COG0714 188 YPDSEEEERIILARV 202 (329)
T ss_pred CCCchHHHHHHHHhC
Confidence 99444 444444433
No 172
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.15 E-value=1.8e-09 Score=119.87 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=124.1
Q ss_pred cccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechh-HHHHHhhhh-
Q 005815 216 VAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGSE-FIEMFVGVG- 291 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s~-~~~~~~g~~- 291 (676)
|+|.+++.+.+...+ -....+||+||||||||++|++++..++. +|....+.- ......|..
T Consensus 22 i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 22 LYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 87 (498)
T ss_pred ccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHH
Confidence 567777666554332 11245999999999999999999997643 555444321 112222211
Q ss_pred hHHH--HHHHHHHhhC---CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC--CC------CCeEEEEe
Q 005815 292 ASRV--RDLFNKAKAN---SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT--GN------SGVIVIAA 358 (676)
Q Consensus 292 ~~~v--r~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~--~~------~~ViVIaa 358 (676)
-... ...|...... ...+||+|||..+. ..+.+.||..|+.-. .. ...++++|
T Consensus 88 i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 88 IQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred HhhhhhcCchhhhcCCccccccEEeecccccCC--------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 0010 1223222111 23499999997663 335667777773211 10 11355555
Q ss_pred cCCcc---cccccccCCCccceEEecCCCC-HHHHHHHHHHHhcC--CC------CC-----------------ccc-c-
Q 005815 359 TNRPE---ILDSALHRPGRFDRQVSVGLPD-IRGREQILKVHSNN--KK------LD-----------------KDV-S- 407 (676)
Q Consensus 359 TN~~~---~Ld~aLlrpGRfd~~I~v~~Pd-~~~R~~IL~~~l~~--~~------l~-----------------~d~-d- 407 (676)
||... ...+++.. ||-..+.+++|+ .++..+++...... .. +. +.+ +
T Consensus 154 TN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ey 231 (498)
T PRK13531 154 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFEL 231 (498)
T ss_pred CCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHH
Confidence 67422 12347888 998899999996 45557787653221 10 11 000 0
Q ss_pred HHHHHHh---C---CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcC
Q 005815 408 LSVIATR---T---PGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAG 457 (676)
Q Consensus 408 l~~La~~---t---~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g 457 (676)
+..|... + ...|++--..+++-|...|...|+..|+.+|+. .+..+++.
T Consensus 232 I~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 232 IFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 1223321 2 237888888999999999999999999999999 66666554
No 173
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.3e-10 Score=132.65 Aligned_cols=158 Identities=25% Similarity=0.355 Sum_probs=109.7
Q ss_pred ccccchhhHHHHHHHHHH----hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhHHHH-
Q 005815 215 DVAGVDEAKQDFQEIVQF----LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSLSGSEFIEM- 286 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~----l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~---~p~i~is~s~~~~~- 286 (676)
-|+|++++...+.+.+.. |.+|. ++-..+||.||+|+|||.||+++|..+. ..++.+++|+|.+.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 489999999998888765 33332 1223588899999999999999999985 89999999999876
Q ss_pred -----------HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC------
Q 005815 287 -----------FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG------ 349 (676)
Q Consensus 287 -----------~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~------ 349 (676)
|+|..+. ..+-+..+.+..|||++|||+.-. ..++|-||+-||.-.-
T Consensus 565 sVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH--------------pdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH--------------PDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC--------------HHHHHHHHHHhcCCeeecCCCC
Confidence 3444332 123344455556999999998873 3477888888874321
Q ss_pred ---CCCeEEEEecCCccc----------------------------ccccccCCCccceEEecCCCCHHHHHHHHHHHh
Q 005815 350 ---NSGVIVIAATNRPEI----------------------------LDSALHRPGRFDRQVSVGLPDIRGREQILKVHS 397 (676)
Q Consensus 350 ---~~~ViVIaaTN~~~~----------------------------Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l 397 (676)
-.+.++|+|+|--.. ..|+++. |+|.+|.|.+.+.+...+|+...+
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred EEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 124799999984211 2233444 677777777777766666666554
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.14 E-value=2.8e-10 Score=103.85 Aligned_cols=126 Identities=33% Similarity=0.491 Sum_probs=82.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCC---EEEEechhHHHH--------------HhhhhhHHHHHHHHHHhhCCCeE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSLSGSEFIEM--------------FVGVGASRVRDLFNKAKANSPCL 309 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p---~i~is~s~~~~~--------------~~g~~~~~vr~lF~~A~~~~P~I 309 (676)
+..++|+||||||||++++.+|..+..+ ++.++++..... .........+..++.++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3569999999999999999999999765 888887754332 11234456778888888887899
Q ss_pred EEEcCCccccccCCCCCCCCChHHHHHHHHH--HHHhccCCCCCCeEEEEecCC-cccccccccCCCccceEEecCCC
Q 005815 310 VFIDEIDAVGRQRGTGIGGGNDEREQTLNQL--LTEMDGFTGNSGVIVIAATNR-PEILDSALHRPGRFDRQVSVGLP 384 (676)
Q Consensus 310 LfIDEID~l~~~r~~~~~~~~~~~~~~l~~L--L~~ld~~~~~~~ViVIaaTN~-~~~Ld~aLlrpGRfd~~I~v~~P 384 (676)
|||||++.+..... ....... ...........+..+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999999953221 1111100 000111122445788888886 3334444444 88888887654
No 175
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.14 E-value=7.8e-10 Score=109.49 Aligned_cols=144 Identities=21% Similarity=0.294 Sum_probs=99.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEechhHHHHHhhhhhHHHHHHHH
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSLSGSEFIEMFVGVGASRVRDLFN 300 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------------------------~i~is~s~~~~~~~g~~~~~vr~lF~ 300 (676)
+.|..+||+||+|+|||++|++++..+... +..+.... . ..+.+.++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 457789999999999999999999987432 12221110 0 012245666666
Q ss_pred HHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccc
Q 005815 301 KAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFD 376 (676)
Q Consensus 301 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd 376 (676)
.+.. ....|++|||+|.+. ....+.|+..++... ...++|.+|+.+..+.+++.+ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~- 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC- 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc-
Confidence 6543 345699999999994 224677888887643 345566667777899999988 77
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCC
Q 005815 377 RQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPG 417 (676)
Q Consensus 377 ~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G 417 (676)
..+.+.+|+.++..++++.. ++++ ..+..++..+.|
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 58999999999999998876 2333 336677776665
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=8.5e-10 Score=127.23 Aligned_cols=226 Identities=12% Similarity=0.138 Sum_probs=130.8
Q ss_pred cccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEE-E
Q 005815 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-L 278 (676)
Q Consensus 200 ~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~-i 278 (676)
....|.+++.+.+++||+|+++..++++..+.....+ ....+.++|+||||+|||++++.+|++++..++. .
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 3457889999999999999999988877766543221 2223459999999999999999999998765433 1
Q ss_pred ech---h----------HHHHH--hhhhhHHHHHHHHHHhh----------CCCeEEEEcCCccccccCCCCCCCCChHH
Q 005815 279 SGS---E----------FIEMF--VGVGASRVRDLFNKAKA----------NSPCLVFIDEIDAVGRQRGTGIGGGNDER 333 (676)
Q Consensus 279 s~s---~----------~~~~~--~g~~~~~vr~lF~~A~~----------~~P~ILfIDEID~l~~~r~~~~~~~~~~~ 333 (676)
+.. . ....+ .....+.++.++..+.. ....||||||++.+... .
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~---------- 211 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D---------- 211 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----------
Confidence 110 0 00000 01122334455555431 34579999999988532 1
Q ss_pred HHHHHHHHH-HhccCCCCCCeEEEEecC-Ccc--------------cccccccCCCccceEEecCCCCHHHHHHHHHHHh
Q 005815 334 EQTLNQLLT-EMDGFTGNSGVIVIAATN-RPE--------------ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHS 397 (676)
Q Consensus 334 ~~~l~~LL~-~ld~~~~~~~ViVIaaTN-~~~--------------~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l 397 (676)
...+..+|. ... ..+.+.+|++++ .+. .|.++++..-|. .+|.|.+.......+.|+..+
T Consensus 212 ~~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 212 TRALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHH
Confidence 123444444 221 123333443333 221 133566642244 478999999988777666665
Q ss_pred cCCC--------CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc-------CCCCCCHHHHHHHH
Q 005815 398 NNKK--------LDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRR-------GKANITLKEIDDSI 451 (676)
Q Consensus 398 ~~~~--------l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~-------~~~~It~~di~~Ai 451 (676)
.... +.....+..|+... .+|++..++.-...+.+. +...++..+...+.
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQGC----SGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHhC----CChHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 5321 11123466676644 458888877776654332 23345555554443
No 177
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=8.7e-10 Score=118.07 Aligned_cols=170 Identities=17% Similarity=0.291 Sum_probs=116.9
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--------CEEEEechhH
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------PFFSLSGSEF 283 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~--------p~i~is~s~~ 283 (676)
+|+||+|++.+++.+.+.+. ..+.|..+||+||+|+|||++|+++|..+-+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 69999999999998877653 2355778999999999999999999997632 122232210
Q ss_pred HHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 284 IEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 284 ~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
.. ..+...+|++.+.+.. ....|++||++|.+. ....|.||..++... .++++|.+|
T Consensus 70 -~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEepp--~~t~~il~~ 130 (313)
T PRK05564 70 -KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEEPP--KGVFIILLC 130 (313)
T ss_pred -CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcCCC--CCeEEEEEe
Confidence 00 1122346666654432 334699999999983 335788999988643 445666666
Q ss_pred CCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCC
Q 005815 360 NRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGF 418 (676)
Q Consensus 360 N~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~ 418 (676)
+.++.+.|.+++ |+ ..+.+.+|+.++-...+..... ..+ +..+..++..+.|-
T Consensus 131 ~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~--~~~-~~~~~~l~~~~~g~ 183 (313)
T PRK05564 131 ENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN--DIK-EEEKKSAIAFSDGI 183 (313)
T ss_pred CChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc--CCC-HHHHHHHHHHcCCC
Confidence 778899999988 77 6999999999988888776543 222 22355566666553
No 178
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.11 E-value=7.6e-10 Score=126.06 Aligned_cols=219 Identities=19% Similarity=0.205 Sum_probs=128.8
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHhhhC--CCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-EEEE---echhHHHHHh
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFAAVG--AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-FFSL---SGSEFIEMFV 288 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~~~g--~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-~i~i---s~s~~~~~~~ 288 (676)
+|.|++.+|..+.-.+ +........-| .+-.-+|||+|+||||||++||++++..... |... ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l--~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLL--FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHH--hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 4688888876664222 22111111111 1222369999999999999999999976432 2221 1111111000
Q ss_pred hh---hhHHH-HHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC-----------CCCCe
Q 005815 289 GV---GASRV-RDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-----------GNSGV 353 (676)
Q Consensus 289 g~---~~~~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-----------~~~~V 353 (676)
.. +...+ ...+..| ...+++|||+|.+. .. ....|+..|+.-. -+..+
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~-----------~~---~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKMD-----------DS---DRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhCC-----------HH---HHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 00 00000 0011112 23599999999983 22 2334444443211 12457
Q ss_pred EEEEecCCcc-------------cccccccCCCccceEEec-CCCCHHHHHHHHHHHhcCCC-------------CC---
Q 005815 354 IVIAATNRPE-------------ILDSALHRPGRFDRQVSV-GLPDIRGREQILKVHSNNKK-------------LD--- 403 (676)
Q Consensus 354 iVIaaTN~~~-------------~Ld~aLlrpGRfd~~I~v-~~Pd~~~R~~IL~~~l~~~~-------------l~--- 403 (676)
.||||+|..+ .|++++++ |||..+.+ +.|+.+...+|.++.+.... ++
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEF 422 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHH
Confidence 8999999653 48999999 99986544 78999988888876432110 00
Q ss_pred -------------cccc---HHHHHH-----h----------CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 005815 404 -------------KDVS---LSVIAT-----R----------TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSID 452 (676)
Q Consensus 404 -------------~d~d---l~~La~-----~----------t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~ 452 (676)
+.+. .+.+.. + ..+.|.+.++.+++-|...|.-+.+..|+.+|++.|+.
T Consensus 423 l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~ 502 (509)
T smart00350 423 LRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIR 502 (509)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 0000 111100 1 12468899999999999999999999999999999986
Q ss_pred HH
Q 005815 453 RI 454 (676)
Q Consensus 453 ~v 454 (676)
-+
T Consensus 503 l~ 504 (509)
T smart00350 503 LL 504 (509)
T ss_pred HH
Confidence 54
No 179
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=3.7e-10 Score=123.43 Aligned_cols=197 Identities=27% Similarity=0.407 Sum_probs=130.4
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM 286 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~ 286 (676)
...+.+|+|...+..++.+.++.....+ ..|||.|.+||||-.+||+|.... +.||+++||..+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 5678899999999999998888765442 369999999999999999998765 679999999877654
Q ss_pred Hh-----hhhhH-------HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHH--hccCCCC--
Q 005815 287 FV-----GVGAS-------RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE--MDGFTGN-- 350 (676)
Q Consensus 287 ~~-----g~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~--ld~~~~~-- 350 (676)
.. |.-.. .-+.-|+.|.. .-||+|||..+- -..+.-+-..|++ ++..-++
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCC-----------HHHHHHHHHHHhhcceeecCCCce
Confidence 22 22111 01233444433 499999998883 2233333333333 2222121
Q ss_pred --CCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH---HH-HHHh----cCCC-----CCccccH
Q 005815 351 --SGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ---IL-KVHS----NNKK-----LDKDVSL 408 (676)
Q Consensus 351 --~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~---IL-~~~l----~~~~-----l~~d~dl 408 (676)
-.|.||+|||+. |. ...+.|+|.. ++.+..|...+|.+ +| .+++ ...+ ++++ .+
T Consensus 355 ikVDVRiIAATNRD--L~-~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~-Al 430 (550)
T COG3604 355 IKVDVRVIAATNRD--LE-EMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE-AL 430 (550)
T ss_pred eEEEEEEEeccchh--HH-HHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH-HH
Confidence 248999999974 22 2333455532 77788899999854 22 2222 2222 2233 26
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 409 SVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 409 ~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
+.|.+..+--|.++|++++++|+..|
T Consensus 431 ~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 431 ELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 77777777678999999999999988
No 180
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.09 E-value=4.6e-10 Score=122.10 Aligned_cols=199 Identities=25% Similarity=0.356 Sum_probs=123.3
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh----cCCCEEEEechhHHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSLSGSEFIE 285 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e----~~~p~i~is~s~~~~ 285 (676)
...+++++|.+..-+++.+-+..+. +....||++|++||||+++|+++... .+.||+.+||..+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 4569999999998887777665521 11235999999999999999999643 367999999998865
Q ss_pred HHhh-----h-------hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc--C----
Q 005815 286 MFVG-----V-------GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--F---- 347 (676)
Q Consensus 286 ~~~g-----~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~--~---- 347 (676)
.... . ....-..+|+.|... +||+|||+.+- .+.+..+-.++.+-.- .
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP-----------~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLP-----------PEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCC-----------HhHHHHHHHHHHcCceEecCCCC
Confidence 4221 1 122234566666444 99999999993 3334444444443110 1
Q ss_pred CCCCCeEEEEecCCc--ccccc--cccCCCccceEEecCCCCHHHHHH----HHH----HHhcCCCCC--cc--ccHHHH
Q 005815 348 TGNSGVIVIAATNRP--EILDS--ALHRPGRFDRQVSVGLPDIRGREQ----ILK----VHSNNKKLD--KD--VSLSVI 411 (676)
Q Consensus 348 ~~~~~ViVIaaTN~~--~~Ld~--aLlrpGRfd~~I~v~~Pd~~~R~~----IL~----~~l~~~~l~--~d--~dl~~L 411 (676)
....+|.+|+|||.. +.+-. .+.+ |. ..+.+.+|+.++|.. +++ .++++.... .. ..+..+
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~--rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTR--RL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhh--hh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 113468999998842 22222 3332 22 244556688888853 223 333333332 11 124455
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHH
Q 005815 412 ATRTPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 412 a~~t~G~sgadL~~lv~~A~~~A~ 435 (676)
-....--|.++|.|++..++..+.
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhc
Confidence 555544588999999999997773
No 181
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.09 E-value=1.3e-09 Score=128.55 Aligned_cols=197 Identities=22% Similarity=0.326 Sum_probs=124.8
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM 286 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~ 286 (676)
+.+|++++|...+.+.+.+.+..+... ...|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 467999999999998888777664332 3469999999999999999998754 679999999865322
Q ss_pred -----Hhhhh-------hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc--cCC----
Q 005815 287 -----FVGVG-------ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFT---- 348 (676)
Q Consensus 287 -----~~g~~-------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld--~~~---- 348 (676)
..|.. .......|+.|. ..+||||||+.+. ...+..+..++..-. ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCCc
Confidence 12210 011223454443 3699999999993 233333333333211 000
Q ss_pred CCCCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcC----CC-----CCccccH
Q 005815 349 GNSGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSNN----KK-----LDKDVSL 408 (676)
Q Consensus 349 ~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~~----~~-----l~~d~dl 408 (676)
...++.+|++|+..-. .+...|+|.. .+.+..|+..+|.+ ++++++.+ .. ++++ .+
T Consensus 508 ~~~~~RiI~~t~~~l~---~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~-al 583 (686)
T PRK15429 508 IQTDVRLIAATNRDLK---KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE-TL 583 (686)
T ss_pred ccceEEEEEeCCCCHH---HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH-HH
Confidence 1235789999886421 1112223322 56677899988865 33333321 11 2223 36
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 409 SVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 409 ~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
..|....+--|.++|++++++|...+
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 77888888789999999999998754
No 182
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=4.8e-09 Score=112.29 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=123.2
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-----------------
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------- 274 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p----------------- 274 (676)
.|++|+|++.+++.|.+.+.. .+.|..+||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999887753 2456789999999999999999999876221
Q ss_pred -EEEEechhHH------HHH---hh--------hhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChH
Q 005815 275 -FFSLSGSEFI------EMF---VG--------VGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDE 332 (676)
Q Consensus 275 -~i~is~s~~~------~~~---~g--------~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~ 332 (676)
++.+...... ..+ .| -..+.+|++.+.+.. ....|++||++|.+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 1222111000 000 00 011345666554432 334799999999993
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHH
Q 005815 333 REQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIA 412 (676)
Q Consensus 333 ~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La 412 (676)
....|.||..++... + .++|..|+.++.|-|.+++ |+ ..+.|++|+.++-.++|......... +.+...++
T Consensus 138 -~~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 346788999998765 3 3566677788999999998 87 78999999999999988876432221 22246777
Q ss_pred HhCCCCcHHHHHHHHH
Q 005815 413 TRTPGFSGADLANLMN 428 (676)
Q Consensus 413 ~~t~G~sgadL~~lv~ 428 (676)
....| +++...++++
T Consensus 209 ~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 209 ALAQG-SPGAAIANIE 223 (314)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 77776 4444444443
No 183
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.08 E-value=1.8e-09 Score=124.80 Aligned_cols=189 Identities=20% Similarity=0.268 Sum_probs=123.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhHHHHHhhhhhHHHHHHHHHH---------hhCCCeEEEEcCCc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSEFIEMFVGVGASRVRDLFNKA---------KANSPCLVFIDEID 316 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s~~~~~~~g~~~~~vr~lF~~A---------~~~~P~ILfIDEID 316 (676)
.+|||.|+||||||++|++++..+. .||+.+..+...+...|.. .+...+... ......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 4799999999999999999999874 4788887533333333321 011101000 01122599999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHhccCC-----------CCCCeEEEEecCCcc---cccccccCCCccceEEecC
Q 005815 317 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-----------GNSGVIVIAATNRPE---ILDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 317 ~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-----------~~~~ViVIaaTN~~~---~Ld~aLlrpGRfd~~I~v~ 382 (676)
.+. ..+++.|+..|+.-. ...++.||+++|..+ .+.++|+. ||+.++.+.
T Consensus 95 rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 994 234555666654221 123588999999765 68889999 999988776
Q ss_pred -CCCHHHHHHHHHHHhcCC-------------------------CCCccccHHHHHHhC--CCCc-HHHHHHHHHHHHHH
Q 005815 383 -LPDIRGREQILKVHSNNK-------------------------KLDKDVSLSVIATRT--PGFS-GADLANLMNEAAIL 433 (676)
Q Consensus 383 -~Pd~~~R~~IL~~~l~~~-------------------------~l~~d~dl~~La~~t--~G~s-gadL~~lv~~A~~~ 433 (676)
.|+.++|.+|++.+.... .++++ .+..++..+ .|.+ .+.-..+++.|...
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 567888889887754211 11111 122333222 2333 34445788999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHH
Q 005815 434 AGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 434 A~r~~~~~It~~di~~Ai~~v~ 455 (676)
|..+++..|+.+|+..|+.-++
T Consensus 238 Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 238 AALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHhCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999997765
No 184
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.08 E-value=1.5e-10 Score=115.32 Aligned_cols=120 Identities=28% Similarity=0.434 Sum_probs=69.5
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-------------------
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG------------------- 272 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~------------------- 272 (676)
.|+||+|++.+|..|.-... | ..++||+||||||||++|+++...+-
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 38999999999999875443 1 34799999999999999999998551
Q ss_pred ---------CCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHH
Q 005815 273 ---------VPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 343 (676)
Q Consensus 273 ---------~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ 343 (676)
.||.....+.-....+|.+....-..+..|.. .|||+||+-.+ ...+++.|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHHHHH
Confidence 23333333222222333322111122333322 49999999777 24577777777
Q ss_pred hccCC-----------CCCCeEEEEecCCc
Q 005815 344 MDGFT-----------GNSGVIVIAATNRP 362 (676)
Q Consensus 344 ld~~~-----------~~~~ViVIaaTN~~ 362 (676)
|+.-. -..++++|+|+|.-
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPc 159 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPC 159 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccc
Confidence 75321 12357899999853
No 185
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.08 E-value=2.4e-09 Score=120.64 Aligned_cols=209 Identities=25% Similarity=0.302 Sum_probs=126.4
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------------
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------------- 273 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~----------------- 273 (676)
..|.++.|+..+++.+.-. ......++|+||||+|||++++.+++.+.-
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4788999988777654311 122346999999999999999999875410
Q ss_pred -----------CEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHH
Q 005815 274 -----------PFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 342 (676)
Q Consensus 274 -----------p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~ 342 (676)
||..-..+.-....+|.+...-...+..|.. .+|||||++.+. . .++..|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~-----------~---~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE-----------R---RTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC-----------H---HHHHHHHH
Confidence 1111111100111233322222345555544 399999998873 2 34444554
Q ss_pred HhccCC-----------CCCCeEEEEecCCcc---------------------cccccccCCCccceEEecCCCCHHH--
Q 005815 343 EMDGFT-----------GNSGVIVIAATNRPE---------------------ILDSALHRPGRFDRQVSVGLPDIRG-- 388 (676)
Q Consensus 343 ~ld~~~-----------~~~~ViVIaaTN~~~---------------------~Ld~aLlrpGRfd~~I~v~~Pd~~~-- 388 (676)
.|+.-. -..++.+|+|+|... .+..+++. |||.++.++.|+.++
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILS 394 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHh
Confidence 442211 134689999999753 36667888 999999999885321
Q ss_pred --------HHHHHHHH--------hcCCCCCcccc-------------H-H--HHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005815 389 --------REQILKVH--------SNNKKLDKDVS-------------L-S--VIATRTPGFSGADLANLMNEAAILAGR 436 (676)
Q Consensus 389 --------R~~IL~~~--------l~~~~l~~d~d-------------l-~--~La~~t~G~sgadL~~lv~~A~~~A~r 436 (676)
..++-+.. .+...+...+. . . .-+....|.|.+....+++-|..+|.-
T Consensus 395 ~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL 474 (506)
T PRK09862 395 KTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADI 474 (506)
T ss_pred cccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 11111000 00000010100 0 1 112234578999999999999999999
Q ss_pred cCCCCCCHHHHHHHHH
Q 005815 437 RGKANITLKEIDDSID 452 (676)
Q Consensus 437 ~~~~~It~~di~~Ai~ 452 (676)
++++.|+.+|+.+|+.
T Consensus 475 ~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 475 DQSDIITRQHLQEAVS 490 (506)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 9999999999999985
No 186
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4e-09 Score=122.52 Aligned_cols=167 Identities=26% Similarity=0.385 Sum_probs=124.8
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEE
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 277 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~ 277 (676)
...-.++-|+|.++-++.+.+++.. +...+-+|.|+||+|||.++..+|... +..++.
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 3456788899999866665555432 123357899999999999999999876 456888
Q ss_pred EechhHHH--HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 278 LSGSEFIE--MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 278 is~s~~~~--~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
++.+.++. +|-|+.+++++.+.+......+.||||||||.+.+..++. +. ....-|-|.-.+ .++.+-+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~---G~--a~DAaNiLKPaL----ARGeL~~ 302 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE---GG--AMDAANLLKPAL----ARGELRC 302 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc---cc--ccchhhhhHHHH----hcCCeEE
Confidence 88888874 5889999999999999998889999999999997543321 11 111223232222 3566889
Q ss_pred EEecCCccc-----ccccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 005815 356 IAATNRPEI-----LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 356 IaaTN~~~~-----Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
|+||...+. -|+||-| || ..|.+.-|+.++-..||+-.-.
T Consensus 303 IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred EEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHH
Confidence 999885443 5899999 99 5889999999999999986543
No 187
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.06 E-value=3.8e-09 Score=122.39 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=66.9
Q ss_pred CeEEEEecCCc--ccccccccCCCccc---eEEecC--CCC-HHHHHHHHHHHh---cCCCCCcccc---HHHHHH----
Q 005815 352 GVIVIAATNRP--EILDSALHRPGRFD---RQVSVG--LPD-IRGREQILKVHS---NNKKLDKDVS---LSVIAT---- 413 (676)
Q Consensus 352 ~ViVIaaTN~~--~~Ld~aLlrpGRfd---~~I~v~--~Pd-~~~R~~IL~~~l---~~~~l~~d~d---l~~La~---- 413 (676)
++.||+++|.. ..++|.++. ||+ ..+.++ .|+ .+.|.++.+... +..+..+..+ +..+.+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57899999975 468999999 998 555553 344 555555544332 2221111222 333321
Q ss_pred hC-----CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 414 RT-----PGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 414 ~t-----~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
.. ...+.++|.+++++|...|..+++..|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 11 1245799999999999888888889999999999987543
No 188
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.06 E-value=2.6e-09 Score=114.01 Aligned_cols=67 Identities=43% Similarity=0.678 Sum_probs=53.0
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhHH
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSEFI 284 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s~~~ 284 (676)
...+.++|+.++.+..--+++.++..+. ..+++||.||||||||.||-++|.++| +||..++++++.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred eccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 3466899999999999999988876542 356899999999999999999999996 899999998875
No 189
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.4e-10 Score=116.59 Aligned_cols=130 Identities=28% Similarity=0.439 Sum_probs=88.0
Q ss_pred cccchhhHHHHHHHHHHhcChhHHhh----hCCCCCC-eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-HHhh
Q 005815 216 VAGVDEAKQDFQEIVQFLQTPEKFAA----VGAKIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-MFVG 289 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~l~~~~~~~~----~g~~~p~-gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-~~~g 289 (676)
|+|++.+|+.|.-.|. .+.++... -.....+ +|||.||.|+|||+||+.+|+.+++||...++..+.+ .|+|
T Consensus 63 VIGQe~AKKvLsVAVY--NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVY--NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeeh--hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 7999999998764332 11111111 1122333 5999999999999999999999999999999998876 4788
Q ss_pred hhhHHH-HHHHHHHh----hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC
Q 005815 290 VGASRV-RDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 347 (676)
Q Consensus 290 ~~~~~v-r~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~ 347 (676)
+.-+++ ..+++.|. .....||+|||||.+.++..+..-..+-..+.+...||..++|-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 766654 34443321 12346999999999988765432222333455667788888764
No 190
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.05 E-value=4e-09 Score=112.51 Aligned_cols=150 Identities=25% Similarity=0.332 Sum_probs=101.6
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---------------------
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--------------------- 272 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~--------------------- 272 (676)
++++|.+++...+...+.. ..+.|..+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3567777776666554432 114455799999999999999999999886
Q ss_pred ---CCEEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc
Q 005815 273 ---VPFFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 345 (676)
Q Consensus 273 ---~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld 345 (676)
-.++.++.++-...- .....++++-+.... ....|++|||+|.+. ....|.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------------~~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------------EDAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------------HHHHHHHHHHhc
Confidence 356777766543211 123345554443322 235799999999994 256788888887
Q ss_pred cCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHH
Q 005815 346 GFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILK 394 (676)
Q Consensus 346 ~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~ 394 (676)
... .+..+|.+||.+..+-+.+.+ |+ ..+.|++|+...+....+
T Consensus 135 ep~--~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 EPP--KNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred cCC--CCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 544 456888888999988888887 76 688887755544443333
No 191
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.04 E-value=1.9e-09 Score=118.91 Aligned_cols=141 Identities=25% Similarity=0.427 Sum_probs=88.2
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------CEEEEe----ch
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSLS----GS 281 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------p~i~is----~s 281 (676)
++++.+.++..+.+ +..+.. .++++|+||||||||++|+.+|..+.. .++.++ ..
T Consensus 174 l~d~~i~e~~le~l---~~~L~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETI---LKRLTI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHH---HHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 66777766655544 333322 356999999999999999999988742 122332 23
Q ss_pred hHHHHHh--hhhhH----HHHHHHHHHhh--CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHh---------
Q 005815 282 EFIEMFV--GVGAS----RVRDLFNKAKA--NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--------- 344 (676)
Q Consensus 282 ~~~~~~~--g~~~~----~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~l--------- 344 (676)
+|+..+. +.+-. .+..+...|+. ..|++||||||+.....+ ++..++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------------hhhhhhhhcccccccccc
Confidence 4443321 11111 23344566654 358999999998874322 111222211
Q ss_pred -----------ccCCCCCCeEEEEecCCcc----cccccccCCCccceEEecCC
Q 005815 345 -----------DGFTGNSGVIVIAATNRPE----ILDSALHRPGRFDRQVSVGL 383 (676)
Q Consensus 345 -----------d~~~~~~~ViVIaaTN~~~----~Ld~aLlrpGRfd~~I~v~~ 383 (676)
+.|.-..++.||||+|..+ .+|.|++| ||. .|++.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 2344567899999999887 69999999 995 566654
No 192
>PRK04132 replication factor C small subunit; Provisional
Probab=99.04 E-value=3.9e-09 Score=124.76 Aligned_cols=170 Identities=21% Similarity=0.206 Sum_probs=123.6
Q ss_pred EEEEc--CCCChHHHHHHHHHHhc-----CCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCC------CeEEEEcCCc
Q 005815 250 VLLVG--PPGTGKTLLAKAIAGEA-----GVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANS------PCLVFIDEID 316 (676)
Q Consensus 250 vLL~G--PpGTGKT~LArAlA~e~-----~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~------P~ILfIDEID 316 (676)
-+..| |++.|||++|+++|+++ +.+++.+|+++... ...+|++...+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 35568 99999999999999997 56899999998532 235666665543322 2699999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHH
Q 005815 317 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVH 396 (676)
Q Consensus 317 ~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~ 396 (676)
.+. ....+.|+..|+.+. .++.+|.+||.+..+.+++++ |+ ..+.|++|+.++-...++..
T Consensus 641 ~Lt--------------~~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALT--------------QDAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCC--------------HHHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 993 235677888887544 457889999999999999988 86 78999999999988888887
Q ss_pred hcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 005815 397 SNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDS 450 (676)
Q Consensus 397 l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~A 450 (676)
+.+.++. ++..+..++..+.| +.+..-++++.+.. . ...|+.+++...
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~---~--~~~It~~~V~~~ 750 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA---L--DDKITDENVFLV 750 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH---h--cCCCCHHHHHHH
Confidence 7654443 34458889988887 44444455554432 1 245777776554
No 193
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.03 E-value=2.1e-10 Score=107.65 Aligned_cols=113 Identities=32% Similarity=0.394 Sum_probs=69.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH--HhhhhhHH------HHHHHHHHhhCCCeEEEEcCCccccc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM--FVGVGASR------VRDLFNKAKANSPCLVFIDEIDAVGR 320 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~--~~g~~~~~------vr~lF~~A~~~~P~ILfIDEID~l~~ 320 (676)
+|+|+||||||||++++.+|..++.+++.++++..... ..|.-.-. ....+..+. ..++|+||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 48999999999999999999999999999988764322 11110000 000000011 15689999999887
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhccC-------C-CCC------CeEEEEecCCcc----cccccccCCCcc
Q 005815 321 QRGTGIGGGNDEREQTLNQLLTEMDGF-------T-GNS------GVIVIAATNRPE----ILDSALHRPGRF 375 (676)
Q Consensus 321 ~r~~~~~~~~~~~~~~l~~LL~~ld~~-------~-~~~------~ViVIaaTN~~~----~Ld~aLlrpGRf 375 (676)
+.+....++.++..-.-. . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 233334444444331100 0 111 489999999988 79999999 87
No 194
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.01 E-value=7.2e-10 Score=124.12 Aligned_cols=258 Identities=20% Similarity=0.259 Sum_probs=147.2
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHh
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFV 288 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~ 288 (676)
.+.+++|.....+.+.+.+..+.. ....++|+|++||||+++|+++.... +.||+.++|..+.+..+
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 466788888877777665544322 23469999999999999999998765 57999999987643321
Q ss_pred -----hhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc--cCCC----C
Q 005815 289 -----GVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFTG----N 350 (676)
Q Consensus 289 -----g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld--~~~~----~ 350 (676)
|... ......|..| ...+||||||+.+. ...+..+..++..-. .... .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCceee
Confidence 1000 0011122222 34699999999993 233333444443211 0000 1
Q ss_pred CCeEEEEecCCcc-------cccccccCCCccceEEecCCCCHHHHHH----HHHHHhcC----C-----CCCccccHHH
Q 005815 351 SGVIVIAATNRPE-------ILDSALHRPGRFDRQVSVGLPDIRGREQ----ILKVHSNN----K-----KLDKDVSLSV 410 (676)
Q Consensus 351 ~~ViVIaaTN~~~-------~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~----IL~~~l~~----~-----~l~~d~dl~~ 410 (676)
.++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ ++++++.. . .++++ .+..
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~ 348 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD-ALRA 348 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH-HHHH
Confidence 2578888887642 12222322 332 45677788888865 33333321 1 12222 3777
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCC-Ccc---c--cccchhhhHHHHHH--HHHH
Q 005815 411 IATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEG-TKM---T--DGKNKILVAYHEIG--HAVC 482 (676)
Q Consensus 411 La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~-~~~---~--~~~~~~~~A~hEag--hal~ 482 (676)
|....+..|.++|+++++.|...+ ....|+.+++.... ........ .++ . .+++...-|+++.+ ..-+
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~~~~-~~~~~~~~~~~l~~~~~~~E~~~i~~al~~~~gn~~~a 424 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLGLDA-RERAETPLEVNLREVRERAEREAVRKAIARVDGNIARA 424 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcCCcc-ccccccccccCHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 888887779999999999998654 34678888874110 00000000 011 0 11222334555554 4445
Q ss_pred HHhCCCCCCCceeeeccCCCccc
Q 005815 483 ATLTPGHDPVQKVTLIPRGQARG 505 (676)
Q Consensus 483 a~~l~~~~~v~~vti~~r~~~~G 505 (676)
|..|+ |.+.|++.+.+.+|
T Consensus 425 A~~Lg----isr~tl~rkl~~~~ 443 (445)
T TIGR02915 425 AELLG----ITRPTLYDLMKKHG 443 (445)
T ss_pred HHHhC----CCHHHHHHHHHHhC
Confidence 66666 67778877765554
No 195
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7e-09 Score=113.57 Aligned_cols=141 Identities=23% Similarity=0.380 Sum_probs=102.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEec-hhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG-SEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGI 326 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~-s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 326 (676)
..+||+||||+|||.||-.+|...+.||+.+-. .+.+...-......++..|+.|.+..-+||++|+|+.|..- .
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~----v 614 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY----V 614 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc----c
Confidence 469999999999999999999999999998744 44433322334456889999999988899999999998632 2
Q ss_pred CCCChHHHHHHHHHHHHhccCCCCC-CeEEEEecCCcccccc-cccCCCccceEEecCCCCH-HHHHHHHH
Q 005815 327 GGGNDEREQTLNQLLTEMDGFTGNS-GVIVIAATNRPEILDS-ALHRPGRFDRQVSVGLPDI-RGREQILK 394 (676)
Q Consensus 327 ~~~~~~~~~~l~~LL~~ld~~~~~~-~ViVIaaTN~~~~Ld~-aLlrpGRfd~~I~v~~Pd~-~~R~~IL~ 394 (676)
.-+......++..|+..+....+.+ ..+|++||.+.+.|.. .++. .|+..+.+|.-.. ++..+++.
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 3456667778888888887666554 4677888887766543 3444 7888998865433 44444443
No 196
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.98 E-value=4.3e-09 Score=118.16 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=127.0
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH-
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF- 287 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~- 287 (676)
.+.+++|.......+.+.+..+... ...++++|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALS----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCC----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 4567888877766665554443322 3469999999999999999997764 5799999998764332
Q ss_pred ----hhhhhH-------HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc--CC---C--
Q 005815 288 ----VGVGAS-------RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FT---G-- 349 (676)
Q Consensus 288 ----~g~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~--~~---~-- 349 (676)
.|.... .....|..| ...+|||||||.+. ...+ ..|+..++. +. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~-----------~~~q---~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP-----------LVLQ---AKLLRILQEREFERIGGHQ 273 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC-----------HHHH---HHHHHHHhcCcEEeCCCCc
Confidence 111000 001122222 23599999999993 2223 334444332 11 1
Q ss_pred --CCCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcC------C---CCCcccc
Q 005815 350 --NSGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSNN------K---KLDKDVS 407 (676)
Q Consensus 350 --~~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~~------~---~l~~d~d 407 (676)
..++.+|++||..-. .+.+.|+|.. .+.+..|+..+|.+ ++.+++.. . .+++ ..
T Consensus 274 ~~~~~~rii~~t~~~l~---~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~-~a 349 (457)
T PRK11361 274 TIKVDIRIIAATNRDLQ---AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDP-MA 349 (457)
T ss_pred eeeeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCH-HH
Confidence 134789999986421 2333344433 56777898888854 22333221 1 2222 23
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 408 LSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 408 l~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+..|....+.-+.++|+++++.|...+ ....|+.+|+...+
T Consensus 350 ~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 350 MSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 677788777779999999999988654 45679999987654
No 197
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.4e-09 Score=110.75 Aligned_cols=83 Identities=33% Similarity=0.496 Sum_probs=63.3
Q ss_pred eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC--------CCCCeEEEEecC----CcccccccccCCCcc
Q 005815 308 CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT--------GNSGVIVIAATN----RPEILDSALHRPGRF 375 (676)
Q Consensus 308 ~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~--------~~~~ViVIaaTN----~~~~Ld~aLlrpGRf 375 (676)
.||||||||.++.+.+. ++.+-.++.+...||-.++|.. .++.+++|++.- .|..|-|.|.- ||
T Consensus 252 GIvFIDEIDKIa~~~~~--g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--Rf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGS--GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RF 327 (444)
T ss_pred CeEEEehhhHHHhcCCC--CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CC
Confidence 59999999999866542 2224556778888888877642 345688888753 57778888865 99
Q ss_pred ceEEecCCCCHHHHHHHHH
Q 005815 376 DRQVSVGLPDIRGREQILK 394 (676)
Q Consensus 376 d~~I~v~~Pd~~~R~~IL~ 394 (676)
--.+++...+.++-.+||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999888874
No 198
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.7e-09 Score=118.45 Aligned_cols=210 Identities=25% Similarity=0.340 Sum_probs=119.6
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----------------
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG----------------- 272 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~----------------- 272 (676)
...|.||+|++.+|..+..... -.+++|++||||||||++|+-+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 4689999999999999975442 234699999999999999999877541
Q ss_pred ------------CCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHH
Q 005815 273 ------------VPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQL 340 (676)
Q Consensus 273 ------------~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~L 340 (676)
.||..-..+.-....+|.+..---.-...| ...||||||+-.+ ..++++.|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA---H~GVLFLDElpef--------------~~~iLe~L 303 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA---HNGVLFLDELPEF--------------KRSILEAL 303 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee---cCCEEEeeccchh--------------hHHHHHHH
Confidence 011110000000111111100000001111 1249999998665 34677777
Q ss_pred HHHhccCCC-----------CCCeEEEEecCCccc-----------------------ccccccCCCccceEEecCCCCH
Q 005815 341 LTEMDGFTG-----------NSGVIVIAATNRPEI-----------------------LDSALHRPGRFDRQVSVGLPDI 386 (676)
Q Consensus 341 L~~ld~~~~-----------~~~ViVIaaTN~~~~-----------------------Ld~aLlrpGRfd~~I~v~~Pd~ 386 (676)
.+-|+.-.- ..++.+|+++|..-. |...+++ |+|..++++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 776653210 124678888885322 3334555 9999999988764
Q ss_pred HHH--------------HHHHHHH----hcCCCC--Cc----------------cccHHHHHHhCCCCcHHHHHHHHHHH
Q 005815 387 RGR--------------EQILKVH----SNNKKL--DK----------------DVSLSVIATRTPGFSGADLANLMNEA 430 (676)
Q Consensus 387 ~~R--------------~~IL~~~----l~~~~l--~~----------------d~dl~~La~~t~G~sgadL~~lv~~A 430 (676)
.++ .++.+.+ .+..+. .. +.++...+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 333 1122111 111111 11 11222223334466777777777777
Q ss_pred HHHHHHcCCCCCCHHHHHHHHH
Q 005815 431 AILAGRRGKANITLKEIDDSID 452 (676)
Q Consensus 431 ~~~A~r~~~~~It~~di~~Ai~ 452 (676)
..+|-..+...|...|+.+|+.
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHh
Confidence 7777777777777777777764
No 199
>PRK15115 response regulator GlrR; Provisional
Probab=98.95 E-value=1.3e-09 Score=121.97 Aligned_cols=232 Identities=21% Similarity=0.286 Sum_probs=138.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHh-----hhhh-------HHHHHHHHHHhhCCCeEEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFV-----GVGA-------SRVRDLFNKAKANSPCLVFI 312 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~-----g~~~-------~~vr~lF~~A~~~~P~ILfI 312 (676)
..++|+|++|||||++|+++.... +.||+.++|..+.+... |... ......|..+ ....|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 359999999999999999998765 57999999987643221 1100 0001122222 2459999
Q ss_pred cCCccccccCCCCCCCCChHHHHHHHHHHHHhc--cCCC----CCCeEEEEecCCcccccccccCCCccce-------EE
Q 005815 313 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFTG----NSGVIVIAATNRPEILDSALHRPGRFDR-------QV 379 (676)
Q Consensus 313 DEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld--~~~~----~~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I 379 (676)
||||.+. ...+..+-.++..-. .... ..++.+|++|+.. ++..+ ..|+|.. .+
T Consensus 235 ~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~ 300 (444)
T PRK15115 235 DEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYRLNVV 300 (444)
T ss_pred EccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHhhcee
Confidence 9999993 223333333333211 0111 1257889988863 33322 3345521 56
Q ss_pred ecCCCCHHHHHH----HHHHHhcC----C-----CCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 005815 380 SVGLPDIRGREQ----ILKVHSNN----K-----KLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKE 446 (676)
Q Consensus 380 ~v~~Pd~~~R~~----IL~~~l~~----~-----~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~d 446 (676)
.+..|...+|.+ ++++++.. . .++++ .+..|....+.-+.++|+++++.|...+ ....|+.++
T Consensus 301 ~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~ 376 (444)
T PRK15115 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDAL 376 (444)
T ss_pred eecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhh
Confidence 677799988854 33333321 1 13333 3788888887779999999999988654 456788888
Q ss_pred HHHHHHHHHcCcCC-Ccc----c-cccchhhhHHHHHH--HHHHHHhCCCCCCCceeeeccCCCcccee
Q 005815 447 IDDSIDRIVAGMEG-TKM----T-DGKNKILVAYHEIG--HAVCATLTPGHDPVQKVTLIPRGQARGLT 507 (676)
Q Consensus 447 i~~Ai~~v~~g~~~-~~~----~-~~~~~~~~A~hEag--hal~a~~l~~~~~v~~vti~~r~~~~G~~ 507 (676)
+...+.. .... ... . .++....-|+++.+ ..-+|..|+ |++.|++.+...+|..
T Consensus 377 l~~~~~~---~~~~~~~~~~~~~~~E~~~i~~al~~~~gn~~~aA~~Lg----isr~tL~rkl~~~~~~ 438 (444)
T PRK15115 377 VEQALEG---ENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAG----RNRTEFYKLLSRHELD 438 (444)
T ss_pred hhhhhcc---cccccccHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhC----CCHHHHHHHHHHhCCC
Confidence 8655421 0000 011 0 12223344556554 455666776 7899999888777764
No 200
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=1.2e-08 Score=109.85 Aligned_cols=150 Identities=22% Similarity=0.308 Sum_probs=104.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEechhHHHHHhhhhhHHHHHHH
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSLSGSEFIEMFVGVGASRVRDLF 299 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------------------------~i~is~s~~~~~~~g~~~~~vr~lF 299 (676)
.+.|.++||+||+|+|||++|+++|..+.+. ++.+...+- . ..-+-+.+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 4567889999999999999999999987431 222211100 0 011234667766
Q ss_pred HHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCcc
Q 005815 300 NKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRF 375 (676)
Q Consensus 300 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRf 375 (676)
+.+.. ....|++||++|.+. ....|.||..+++.. .++++|.+|+.++.|.|.+++ |+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc
Confidence 55543 345699999999994 357789999998643 567888999999999999998 88
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCC
Q 005815 376 DRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGF 418 (676)
Q Consensus 376 d~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~ 418 (676)
..+.|++|+.++-.+.|...... ..+.+...++....|-
T Consensus 158 -~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 158 -QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred -eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 56999999999888888765421 1222344556666653
No 201
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.93 E-value=2e-09 Score=105.37 Aligned_cols=109 Identities=36% Similarity=0.443 Sum_probs=74.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CEEEEechhHHHHHhhhhhHHHHHHHHH------HhhCCCeEEEEcCCccc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSLSGSEFIEMFVGVGASRVRDLFNK------AKANSPCLVFIDEIDAV 318 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~----p~i~is~s~~~~~~~g~~~~~vr~lF~~------A~~~~P~ILfIDEID~l 318 (676)
.+||+||+|+|||.+|+++|..+.. +++.++++++... ......+..++.. +... .||||||||..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEidKa 80 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEIDKA 80 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHHhhc
Confidence 4899999999999999999999996 9999999998761 1111112222211 1111 29999999999
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhccCC---------CCCCeEEEEecCCccc
Q 005815 319 GRQRGTGIGGGNDEREQTLNQLLTEMDGFT---------GNSGVIVIAATNRPEI 364 (676)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~---------~~~~ViVIaaTN~~~~ 364 (676)
.+.. ..+.+-....+.+.||..+|+-. ..+++++|+|+|.-..
T Consensus 81 ~~~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 81 HPSN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp SHTT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 7641 12334445677888888776421 1246899999996543
No 202
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.92 E-value=8.8e-09 Score=111.41 Aligned_cols=160 Identities=24% Similarity=0.389 Sum_probs=102.7
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCEEEE----
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSL---- 278 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~p~i~i---- 278 (676)
.+.|.-++|++..|..|--- .-+|. -.|+||.|+.|||||+++||+|.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 57799999999998876421 11222 2579999999999999999999976 3322110
Q ss_pred --echhHHHH-------------------HhhhhhHHHH------HHHHH----------HhhCCCeEEEEcCCcccccc
Q 005815 279 --SGSEFIEM-------------------FVGVGASRVR------DLFNK----------AKANSPCLVFIDEIDAVGRQ 321 (676)
Q Consensus 279 --s~s~~~~~-------------------~~g~~~~~vr------~lF~~----------A~~~~P~ILfIDEID~l~~~ 321 (676)
.|.+...+ -.+.++.++- ...+. |+. ...||++||+..|-
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEecccccc--
Confidence 11111111 1122333221 11110 111 22599999998883
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcc---------C--CCCCCeEEEEecCCcc-cccccccCCCccceEEecCCC-CHHH
Q 005815 322 RGTGIGGGNDEREQTLNQLLTEMDG---------F--TGNSGVIVIAATNRPE-ILDSALHRPGRFDRQVSVGLP-DIRG 388 (676)
Q Consensus 322 r~~~~~~~~~~~~~~l~~LL~~ld~---------~--~~~~~ViVIaaTN~~~-~Ld~aLlrpGRfd~~I~v~~P-d~~~ 388 (676)
.++++.||..+.. + ....++++|+|+|..+ .|-|.|+. ||...+.+..| +.++
T Consensus 158 ------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 158 ------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred ------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 4466777766543 1 2234689999999764 58888988 99999999876 7889
Q ss_pred HHHHHHHHhc
Q 005815 389 REQILKVHSN 398 (676)
Q Consensus 389 R~~IL~~~l~ 398 (676)
|.+|.+..+.
T Consensus 224 rv~Ii~r~~~ 233 (423)
T COG1239 224 RVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHH
Confidence 9888876543
No 203
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.92 E-value=5.7e-09 Score=101.84 Aligned_cols=123 Identities=28% Similarity=0.408 Sum_probs=77.6
Q ss_pred cccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH-----H
Q 005815 216 VAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM-----F 287 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~-----~ 287 (676)
|+|.+.+.+.+.+.+..+... +..|||+|++||||+++|+++.+.. +.||+.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578888878777777654332 3569999999999999999998865 579999999876533 2
Q ss_pred hhhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc--CCC----CCCeE
Q 005815 288 VGVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FTG----NSGVI 354 (676)
Q Consensus 288 ~g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~--~~~----~~~Vi 354 (676)
.|... .....+|+.|... +||||||+.|. ...+..+.+++..-.- ... ..++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhH-----------HHHHHHHHHHHhhchhccccccccccccce
Confidence 23211 1123677777554 99999999993 3344444445543210 111 23689
Q ss_pred EEEecCCc
Q 005815 355 VIAATNRP 362 (676)
Q Consensus 355 VIaaTN~~ 362 (676)
||++|+.+
T Consensus 137 iI~st~~~ 144 (168)
T PF00158_consen 137 IIASTSKD 144 (168)
T ss_dssp EEEEESS-
T ss_pred EEeecCcC
Confidence 99999864
No 204
>PRK08116 hypothetical protein; Validated
Probab=98.92 E-value=1e-08 Score=107.47 Aligned_cols=123 Identities=23% Similarity=0.313 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhh----hhHHHHHHHHHHhhCCCeEEEEcCCcccc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGV----GASRVRDLFNKAKANSPCLVFIDEIDAVG 319 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 319 (676)
+.|++|+|+||||||+||.++|+++ +.++++++.+++...+... ......++++... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 7899999999887654321 1112223343332 34599999995431
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc-cc----ccccccCCCcc---ceEEecCCCCH
Q 005815 320 RQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP-EI----LDSALHRPGRF---DRQVSVGLPDI 386 (676)
Q Consensus 320 ~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~-~~----Ld~aLlrpGRf---d~~I~v~~Pd~ 386 (676)
..++....+..++... .. .+..+|.|||.+ +. ++..+.+ |+ ...|.+..||.
T Consensus 192 ---------~t~~~~~~l~~iin~r---~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSR---YR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHH---HH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1333444444444432 22 233577777754 33 3555555 53 34577777775
No 205
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.91 E-value=1e-08 Score=106.79 Aligned_cols=201 Identities=19% Similarity=0.219 Sum_probs=128.8
Q ss_pred ccccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 199 SKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 199 s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
....-|++++++-+++|++++++....+.+..+.- ..| +.|+|||||||||+...+.|..+..|.-.
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~- 92 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPT- 92 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCc-
Confidence 33445788999999999999999988777663221 222 69999999999999999999998665111
Q ss_pred echhHHHHHh----hhhhHH-HHHHHHHHhh-------CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc
Q 005815 279 SGSEFIEMFV----GVGASR-VRDLFNKAKA-------NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 346 (676)
Q Consensus 279 s~s~~~~~~~----g~~~~~-vr~lF~~A~~-------~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~ 346 (676)
.+-+.+.-. |-+.-+ --..|..++. ..+..+++||.|++. ....|+|-+.++.
T Consensus 93 -~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------~~AQnALRRviek 157 (360)
T KOG0990|consen 93 -TSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------RDAQNALRRVIEK 157 (360)
T ss_pred -hhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------------HHHHHHHHHHHHH
Confidence 111111111 111111 1234555542 367899999999994 2345666666666
Q ss_pred CCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCcccc-HHHHHHhCCCCcHHHHHH
Q 005815 347 FTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVS-LSVIATRTPGFSGADLAN 425 (676)
Q Consensus 347 ~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~d-l~~La~~t~G~sgadL~~ 425 (676)
+..+. .++..+|++..+.|++++ ||. .+.+.+-+...-...+.++..........+ ...+++. +-.|++.
T Consensus 158 ~t~n~--rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr~ 228 (360)
T KOG0990|consen 158 YTANT--RFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMRV 228 (360)
T ss_pred hccce--EEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHHH
Confidence 65554 444667999999999988 774 456666677777777888776555432221 2334443 4457777
Q ss_pred HHHHHHHHHHH
Q 005815 426 LMNEAAILAGR 436 (676)
Q Consensus 426 lv~~A~~~A~r 436 (676)
.+|.....+..
T Consensus 229 a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 229 ALNYLQSILKK 239 (360)
T ss_pred HHHHHHHHHHH
Confidence 76666555543
No 206
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=9.5e-09 Score=110.89 Aligned_cols=149 Identities=16% Similarity=0.165 Sum_probs=105.8
Q ss_pred ccccccc-chhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC----------------
Q 005815 212 TFDDVAG-VDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------------- 274 (676)
Q Consensus 212 ~f~dv~G-~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---------------- 274 (676)
.|+.|+| ++.+++.|.+.+. ..+.|..+||+||+|+||+++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 8888888877664 23567789999999999999999999886321
Q ss_pred --------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHH
Q 005815 275 --------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 342 (676)
Q Consensus 275 --------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~ 342 (676)
+..+... .. ....+.+|++.+.+.. ....|++|||+|.+. ....|.||.
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLLK 132 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLLK 132 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHHH
Confidence 1111110 00 0122456666555432 234699999999983 346788999
Q ss_pred HhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHH
Q 005815 343 EMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKV 395 (676)
Q Consensus 343 ~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~ 395 (676)
.++... .++++|.+|+.+..+.|.+++ |+ ..+++.+|+.++-.++++.
T Consensus 133 ~LEEPp--~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEPS--GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCCC--CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 998643 456777788888899999988 77 6899999999887777754
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.84 E-value=6.6e-08 Score=109.51 Aligned_cols=193 Identities=18% Similarity=0.288 Sum_probs=126.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEechhHHHH---Hh-------hh------hhHHHHHHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSLSGSEFIEM---FV-------GV------GASRVRDLFNKA 302 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~is~s~~~~~---~~-------g~------~~~~vr~lF~~A 302 (676)
.++++|-||||||.+++.+..++ ..+++.+++-.+.+. |. |. +.+.+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 58999999999999999998865 356888887655432 11 11 112233333321
Q ss_pred -hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc----ccccCCCccce
Q 005815 303 -KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD----SALHRPGRFDR 377 (676)
Q Consensus 303 -~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld----~aLlrpGRfd~ 377 (676)
....++||+|||+|.|..+. +.++..|+.+-. ..++.++||+..|..+... ....+ |++.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~ 568 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGL 568 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccc
Confidence 23457999999999997432 346666665532 2356788888888765422 22222 5554
Q ss_pred -EEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcH--HHHHHHHHHHHHHHHHcCC-------CCCCHHHH
Q 005815 378 -QVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSG--ADLANLMNEAAILAGRRGK-------ANITLKEI 447 (676)
Q Consensus 378 -~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sg--adL~~lv~~A~~~A~r~~~-------~~It~~di 447 (676)
.+.|.+.+..+.++|+...+.....-..-..+-+|+.....|| +..-.+|++|...|..+.. ..|++-|+
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v 648 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHV 648 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHH
Confidence 8899999999999999998877632222224445555444444 3344688999988876655 45788888
Q ss_pred HHHHHHHHc
Q 005815 448 DDSIDRIVA 456 (676)
Q Consensus 448 ~~Ai~~v~~ 456 (676)
.+|+..+..
T Consensus 649 ~~Ai~em~~ 657 (767)
T KOG1514|consen 649 MEAINEMLA 657 (767)
T ss_pred HHHHHHHhh
Confidence 888877654
No 208
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.83 E-value=3e-08 Score=111.86 Aligned_cols=209 Identities=22% Similarity=0.311 Sum_probs=128.6
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH-
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF- 287 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~- 287 (676)
.+.+++|.....+.+.+.+..+... ...++++|++|||||++|+++.... +.||+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678999988877777666543322 3459999999999999999998875 5799999998764321
Q ss_pred ----hhhhhH------H-HHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc--cCCC----C
Q 005815 288 ----VGVGAS------R-VRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFTG----N 350 (676)
Q Consensus 288 ----~g~~~~------~-vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld--~~~~----~ 350 (676)
.|.... . ....|+.+ ....|||||||.+. ...+..+..++..-. .... .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 111000 0 01112222 24589999999993 223333333333211 0001 1
Q ss_pred CCeEEEEecCCcc-------cccccccCCCccceEEecCCCCHHHHHH----HHHHHhc----CC-----CCCccccHHH
Q 005815 351 SGVIVIAATNRPE-------ILDSALHRPGRFDRQVSVGLPDIRGREQ----ILKVHSN----NK-----KLDKDVSLSV 410 (676)
Q Consensus 351 ~~ViVIaaTN~~~-------~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~----IL~~~l~----~~-----~l~~d~dl~~ 410 (676)
.++.+|++|+..- .+.+.|.. ||. .+.+..|...+|.+ ++++++. .. .+++ ..+..
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~~ 347 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHP-ETEAA 347 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCH-HHHHH
Confidence 2468888887542 23333443 442 45666688777754 4444432 11 1223 33778
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 411 IATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 411 La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
|....+.-|.++|+++++.+...+ ....|+.+|+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 888888889999999999998665 45678888886544
No 209
>PRK12377 putative replication protein; Provisional
Probab=98.81 E-value=5e-08 Score=100.98 Aligned_cols=101 Identities=22% Similarity=0.239 Sum_probs=67.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhhhh--HHHHHHHHHHhhCCCeEEEEcCCcccccc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGVGA--SRVRDLFNKAKANSPCLVFIDEIDAVGRQ 321 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~~~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 321 (676)
..+++|+||||||||+||.|+|+++ +..+++++..++.......-. ....++++.. ....+|+|||+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 3589999999999999999999987 788899999888765432111 1122334333 455799999997652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 322 RGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 322 r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
..+....++.+++..-. ....-+|.|||..
T Consensus 177 -------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 177 -------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred -------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 23345556666666532 1223467778854
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.81 E-value=5.4e-08 Score=104.82 Aligned_cols=82 Identities=22% Similarity=0.363 Sum_probs=58.0
Q ss_pred ccc-ccccchhhHHHHHHHHHHhcChhHHhhhCCC-CCCeEEEEcCCCChHHHHHHHHHHhcCC-------CEEEEec--
Q 005815 212 TFD-DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSLSG-- 280 (676)
Q Consensus 212 ~f~-dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~-~p~gvLL~GPpGTGKT~LArAlA~e~~~-------p~i~is~-- 280 (676)
-|+ ++.|++++++++- ++++.... |.. ..+.++|+||||+|||+||+++++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv---~~l~~~a~----g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFV---NYFKSAAQ----GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHH---HHHHHHHh----cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 366 8999999966554 45444331 222 3467899999999999999999999976 8999988
Q ss_pred --hhHHHHHhhhhhHHHHHHHH
Q 005815 281 --SEFIEMFVGVGASRVRDLFN 300 (676)
Q Consensus 281 --s~~~~~~~g~~~~~vr~lF~ 300 (676)
+.+.+..++.....+|..|.
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLE 142 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHH
Confidence 66665555555555544443
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.79 E-value=7.4e-08 Score=99.44 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=82.9
Q ss_pred CCCcccccc-cchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHH
Q 005815 209 TGVTFDDVA-GVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFI 284 (676)
Q Consensus 209 ~~~~f~dv~-G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~ 284 (676)
...+|++.. +.+..+..+..+..+..+.. ....+++|+|+||||||+|+.++|.++ +.+++.++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 355787764 33444444444444443211 113489999999999999999999987 7889999999988
Q ss_pred HHHhhhh---hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 285 EMFVGVG---ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 285 ~~~~g~~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
..+.... ......+++... ..++|+|||++... ..+....++.+++..-- .....+|.+||.
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl 204 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT---------ESRYEKVIINQIVDRRS----SSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCC
Confidence 6543321 112234444433 46799999998763 23445557777776521 122357777785
Q ss_pred c
Q 005815 362 P 362 (676)
Q Consensus 362 ~ 362 (676)
.
T Consensus 205 ~ 205 (244)
T PRK07952 205 N 205 (244)
T ss_pred C
Confidence 3
No 212
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.77 E-value=4.6e-08 Score=94.92 Aligned_cols=133 Identities=21% Similarity=0.359 Sum_probs=87.4
Q ss_pred cchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------------------C
Q 005815 218 GVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------------------P 274 (676)
Q Consensus 218 G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-----------------------p 274 (676)
|++++.+.|.+.+.. .+.|..+||+||+|+||+++|+++|..+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 677777777766642 356778999999999999999999997622 1
Q ss_pred EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 275 FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 275 ~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
++.++...... .-..+.++++...+.. ....|++|||+|.+. ....|.||..|+...
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEepp-- 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEEPP-- 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHSTT--
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcCCC--
Confidence 22222221100 0123556666655432 345699999999993 457889999998654
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCC
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGL 383 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~ 383 (676)
.++++|.+|+.++.+-|.+++ |+ ..+.+++
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 567888888999999999988 77 5666654
No 213
>PRK08181 transposase; Validated
Probab=98.77 E-value=1.2e-07 Score=99.19 Aligned_cols=100 Identities=21% Similarity=0.339 Sum_probs=67.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhhh-hHHHHHHHHHHhhCCCeEEEEcCCccccccC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGVG-ASRVRDLFNKAKANSPCLVFIDEIDAVGRQR 322 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 322 (676)
..+++|+||||||||+|+.|++.++ |..+++++..++.+.+.... .......+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~--- 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT--- 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc---
Confidence 3579999999999999999999765 78899999999887653221 11233344443 345799999998773
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 323 GTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 323 ~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
.++.....+.+++....+ + + -+|.|||.+
T Consensus 181 ------~~~~~~~~Lf~lin~R~~---~-~-s~IiTSN~~ 209 (269)
T PRK08181 181 ------KDQAETSVLFELISARYE---R-R-SILITANQP 209 (269)
T ss_pred ------CCHHHHHHHHHHHHHHHh---C-C-CEEEEcCCC
Confidence 123344566666665422 1 1 366677754
No 214
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=6.6e-08 Score=104.38 Aligned_cols=135 Identities=20% Similarity=0.283 Sum_probs=96.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------------------------EEEEechhHH-------------
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------------------------FFSLSGSEFI------------- 284 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------------------------~i~is~s~~~------------- 284 (676)
..+.|.++||+||+|+||+++|+++|..+.+. ++.+......
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 34788999999999999999999999877432 1111111000
Q ss_pred ---HH------H-hhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 285 ---EM------F-VGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 285 ---~~------~-~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
+. . ..-..+.+|++.+.+.. ..-.|++||++|.+. ....|.||..+++ +.
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp 160 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLEE--PP 160 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CC
Confidence 00 0 00123456666655432 233599999999994 4577999999985 45
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVH 396 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~ 396 (676)
.++++|.+|+.++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 567899999999999999998 88 79999999999888888654
No 215
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.75 E-value=2.2e-07 Score=95.18 Aligned_cols=179 Identities=17% Similarity=0.249 Sum_probs=126.4
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-C--CC-----
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G--VP----- 274 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-~--~p----- 274 (676)
+|++++.+.+|+.+.+.++....|..+...- +. .++++|||+|+||-|.+.++-+++ | ++
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~-----------d~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTG-----------DF-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccC-----------CC-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 5788899999999999999988887765411 11 249999999999999999999887 2 21
Q ss_pred ---------------------EEEEechhHHHHHhhh-hhHHHHHHHHHHhhCCC---------eEEEEcCCccccccCC
Q 005815 275 ---------------------FFSLSGSEFIEMFVGV-GASRVRDLFNKAKANSP---------CLVFIDEIDAVGRQRG 323 (676)
Q Consensus 275 ---------------------~i~is~s~~~~~~~g~-~~~~vr~lF~~A~~~~P---------~ILfIDEID~l~~~r~ 323 (676)
.+.++.|+. |. ..--++++++...+.+| .+++|-|.|.+-
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT---- 140 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT---- 140 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh----
Confidence 112222221 11 11224566655444332 599999999994
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC
Q 005815 324 TGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD 403 (676)
Q Consensus 324 ~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~ 403 (676)
......|-..|+.+..+ +.+|..+|....+-+++.+ |+ ..|.++.|+.++-..++...+.+.++.
T Consensus 141 ----------~dAQ~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 141 ----------RDAQHALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred ----------HHHHHHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 22445566777766554 5677777888888888888 76 688999999999999999998877765
Q ss_pred -ccccHHHHHHhCCC
Q 005815 404 -KDVSLSVIATRTPG 417 (676)
Q Consensus 404 -~d~dl~~La~~t~G 417 (676)
+..-+..+++.+.|
T Consensus 206 lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 206 LPKELLKRIAEKSNR 220 (351)
T ss_pred CcHHHHHHHHHHhcc
Confidence 33336778877665
No 216
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.75 E-value=1.6e-07 Score=110.99 Aligned_cols=157 Identities=20% Similarity=0.185 Sum_probs=87.3
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHh-----------hhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCEE
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFA-----------AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFF 276 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~-----------~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~p~i 276 (676)
.|.|++.+|+.+. +..+....+.. ....+-.-.|||+|+||||||.+|++++... |.++.
T Consensus 451 ~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 3788888887662 22232221100 0112233369999999999999999999854 23455
Q ss_pred EEechhHHHHHh-hhhhHHH-HHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC------
Q 005815 277 SLSGSEFIEMFV-GVGASRV-RDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT------ 348 (676)
Q Consensus 277 ~is~s~~~~~~~-g~~~~~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~------ 348 (676)
.+.+..+....- ..+.-.+ ...+..| ...+++|||+|.+. ...+ ..|+..|+.-.
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkms-----------~~~Q---~aLlEaMEqqtIsI~Ka 591 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDKCH-----------NESR---LSLYEVMEQQTVTIAKA 591 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhhCC-----------HHHH---HHHHHHHhCCEEEEecC
Confidence 544443321000 0000000 0111112 23599999999983 2223 33444443211
Q ss_pred -----CCCCeEEEEecCCcc-------------cccccccCCCccceEEe-cCCCCHHHHHHH
Q 005815 349 -----GNSGVIVIAATNRPE-------------ILDSALHRPGRFDRQVS-VGLPDIRGREQI 392 (676)
Q Consensus 349 -----~~~~ViVIaaTN~~~-------------~Ld~aLlrpGRfd~~I~-v~~Pd~~~R~~I 392 (676)
-+..+.||||+|... .|+++|++ |||..+. ++.|+.+.=..|
T Consensus 592 Gi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 592 GIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred CcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 134689999999742 27789999 9998654 456765544444
No 217
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.73 E-value=6.8e-08 Score=111.89 Aligned_cols=99 Identities=21% Similarity=0.305 Sum_probs=63.6
Q ss_pred CeEEEEecCCc--ccccccccCCCccc---eEEecC--CC-CHHHHHHHHHHHhcCC-------CCCccccHHHHHHh--
Q 005815 352 GVIVIAATNRP--EILDSALHRPGRFD---RQVSVG--LP-DIRGREQILKVHSNNK-------KLDKDVSLSVIATR-- 414 (676)
Q Consensus 352 ~ViVIaaTN~~--~~Ld~aLlrpGRfd---~~I~v~--~P-d~~~R~~IL~~~l~~~-------~l~~d~dl~~La~~-- 414 (676)
++.||+++|+. ..+||+|.. ||. ..+.++ .+ +.+.+..+++...+.. .++.+. +..|.+.
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eA-Va~LI~~~~ 353 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDA-VEEIIREAK 353 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHHH
Confidence 57889999875 457888888 875 445554 22 2455555655433221 122221 2222221
Q ss_pred -CCC------CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 005815 415 -TPG------FSGADLANLMNEAAILAGRRGKANITLKEIDDSIDR 453 (676)
Q Consensus 415 -t~G------~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~ 453 (676)
..| +..++|.+++++|...|...++..|+.+|+.+|+.+
T Consensus 354 R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 354 RRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 112 346899999999999999999999999999988754
No 218
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.6e-08 Score=105.26 Aligned_cols=98 Identities=30% Similarity=0.499 Sum_probs=70.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-HHhhhhhH-HHHHHHHHHh----hCCCeEEEEcCCccccccC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-MFVGVGAS-RVRDLFNKAK----ANSPCLVFIDEIDAVGRQR 322 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-~~~g~~~~-~vr~lF~~A~----~~~P~ILfIDEID~l~~~r 322 (676)
+|||.||+|+|||+||+.+|+-+++||..++|..+.. .|+|+.-+ -+..++..|. +.+..|+||||+|.+..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 5999999999999999999999999999999998864 57877544 3455655542 2344699999999998543
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcc
Q 005815 323 GTGIGGGNDEREQTLNQLLTEMDG 346 (676)
Q Consensus 323 ~~~~~~~~~~~~~~l~~LL~~ld~ 346 (676)
.......+-..+.+...||..++|
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred ccccccccccchhHHHHHHHHhcc
Confidence 221111122234566667777765
No 219
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.71 E-value=8e-08 Score=108.14 Aligned_cols=208 Identities=22% Similarity=0.303 Sum_probs=124.9
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHh-
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFV- 288 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~- 288 (676)
..+++|...+..++.+.+..+... ...+++.|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 346888888777776665543322 3469999999999999999998764 57999999976643221
Q ss_pred ----hhhhH-------HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc--CC----CCC
Q 005815 289 ----GVGAS-------RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FT----GNS 351 (676)
Q Consensus 289 ----g~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~--~~----~~~ 351 (676)
|.... .....|. ......|||||||.+. ...+..+..++..-.. .. ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC-----------HHHHHHHHHHHhcCcEEECCCCceeee
Confidence 11000 0001122 2235689999999993 2333344444432110 00 112
Q ss_pred CeEEEEecCCcccccccccCCCccc-------eEEecCCCCHHHHHH----HHHHHhc----CC-----CCCccccHHHH
Q 005815 352 GVIVIAATNRPEILDSALHRPGRFD-------RQVSVGLPDIRGREQ----ILKVHSN----NK-----KLDKDVSLSVI 411 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlrpGRfd-------~~I~v~~Pd~~~R~~----IL~~~l~----~~-----~l~~d~dl~~L 411 (676)
++.+|++|+..-. .+...|+|. ..+.+..|+..+|.+ ++++++. .. .+++ ..+..|
T Consensus 269 ~~rii~~~~~~l~---~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~~L 344 (463)
T TIGR01818 269 DVRIVAATHQNLE---ALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDP-EALERL 344 (463)
T ss_pred eeEEEEeCCCCHH---HHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCH-HHHHHH
Confidence 5678888875421 222233333 134666677766643 3333332 11 1222 236777
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 412 ATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 412 a~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
....+.-|.++|+++++.|...+ ....|+.+|+...+
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 77777778899999999998665 34678899887655
No 220
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.69 E-value=3.3e-07 Score=104.12 Aligned_cols=212 Identities=17% Similarity=0.216 Sum_probs=118.0
Q ss_pred cccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 200 KAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 200 ~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
....|++++.+.+.+||+-...-.++++..+.... .+....+-+||+||||||||++++.+|++++..+.+..
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 44678999999999999988665554444433211 12222345888999999999999999999988776642
Q ss_pred -chhHH------HHHhhhh------hH---HHHHH-HHHHhh-----------CCCeEEEEcCCccccccCCCCCCCCCh
Q 005815 280 -GSEFI------EMFVGVG------AS---RVRDL-FNKAKA-----------NSPCLVFIDEIDAVGRQRGTGIGGGND 331 (676)
Q Consensus 280 -~s~~~------~~~~g~~------~~---~vr~l-F~~A~~-----------~~P~ILfIDEID~l~~~r~~~~~~~~~ 331 (676)
...+. ..+.+.. .. ...++ +..++. ..+.||+|||+-.++.. ...
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-------~~~ 150 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-------DTS 150 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch-------hHH
Confidence 21110 0111110 01 11111 111111 24679999999877521 112
Q ss_pred HHHHHHHHHHHHhccCCCCC-CeEEEEe-cC------Cc--------ccccccccCCCccceEEecCCCCHHHHHHHHHH
Q 005815 332 EREQTLNQLLTEMDGFTGNS-GVIVIAA-TN------RP--------EILDSALHRPGRFDRQVSVGLPDIRGREQILKV 395 (676)
Q Consensus 332 ~~~~~l~~LL~~ld~~~~~~-~ViVIaa-TN------~~--------~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~ 395 (676)
.....+.+++.. ... ++|+|.+ ++ .. ..+++.++...++ .+|.|.+-...-..+-|+.
T Consensus 151 ~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 151 RFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHH
Confidence 333344443332 222 6666666 11 11 1345555543334 4778876665444444443
Q ss_pred HhcCC--------CCCcccc-HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005815 396 HSNNK--------KLDKDVS-LSVIATRTPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 396 ~l~~~--------~l~~d~d-l~~La~~t~G~sgadL~~lv~~A~~~A~ 435 (676)
.+... ......+ ++.|+..+. +||+..++.-...+.
T Consensus 225 I~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 225 ILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 33221 1222222 667776654 599999998888886
No 221
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.67 E-value=1.8e-07 Score=99.88 Aligned_cols=101 Identities=27% Similarity=0.334 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhh-hhHHHHHHHHHHhhCCCeEEEEcCCcccccc
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGV-GASRVRDLFNKAKANSPCLVFIDEIDAVGRQ 321 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 321 (676)
..+|++|+||+|||||+|+.|+|+++ |.++..++.++|...+... ....+...++.. ....+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCcc--
Confidence 35799999999999999999999988 8889999998887654322 111233444443 345699999996652
Q ss_pred CCCCCCCCChH-HHHHHHHHHHH-hccCCCCCCeEEEEecCCc
Q 005815 322 RGTGIGGGNDE-REQTLNQLLTE-MDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 322 r~~~~~~~~~~-~~~~l~~LL~~-ld~~~~~~~ViVIaaTN~~ 362 (676)
..++ ...++..++.. +. .+..+|.|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 1222 22455555542 21 234678888864
No 222
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.65 E-value=1.8e-07 Score=107.65 Aligned_cols=188 Identities=14% Similarity=0.136 Sum_probs=127.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhHHHHHhhhhh--HHH--------HHHHHHHhhCCCeEEEEcCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSEFIEMFVGVGA--SRV--------RDLFNKAKANSPCLVFIDEI 315 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s~~~~~~~g~~~--~~v--------r~lF~~A~~~~P~ILfIDEI 315 (676)
.||+|.|++|||||+++++++.-+. .||..+..+--.+..+|... ..+ ..++..|. ..||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 5899999999999999999999874 58887765544444444421 111 12233222 259999999
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHhccC-----------CCCCCeEEEEecCCc---ccccccccCCCccceEEec
Q 005815 316 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------TGNSGVIVIAATNRP---EILDSALHRPGRFDRQVSV 381 (676)
Q Consensus 316 D~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~-----------~~~~~ViVIaaTN~~---~~Ld~aLlrpGRfd~~I~v 381 (676)
..+- ..+++.|++-|+.- .-...+++|++-|.. ..|.++++. ||+.++.+
T Consensus 103 n~~~--------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERLE--------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccCC--------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 8873 35778888887632 112357888874432 348888999 99999999
Q ss_pred CCCCHHHH-------HHHHHH--HhcCCCCCccccHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 005815 382 GLPDIRGR-------EQILKV--HSNNKKLDKDVSLSVIATRT--PGF-SGADLANLMNEAAILAGRRGKANITLKEIDD 449 (676)
Q Consensus 382 ~~Pd~~~R-------~~IL~~--~l~~~~l~~d~dl~~La~~t--~G~-sgadL~~lv~~A~~~A~r~~~~~It~~di~~ 449 (676)
..|+..+. .+|... .+.+..+++. .+..++..+ .|. |.+--..+++-|..+|..+++..|+.+|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 98875542 123322 2233333322 234433322 354 6666778999999999999999999999999
Q ss_pred HHHHHH
Q 005815 450 SIDRIV 455 (676)
Q Consensus 450 Ai~~v~ 455 (676)
|+.-++
T Consensus 246 Aa~lvL 251 (584)
T PRK13406 246 AARLVL 251 (584)
T ss_pred HHHHHH
Confidence 997765
No 223
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=8e-07 Score=95.22 Aligned_cols=153 Identities=21% Similarity=0.335 Sum_probs=100.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCE----EEEechhHHHH-------Hh-------h------hhhHHHHHHH
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF----FSLSGSEFIEM-------FV-------G------VGASRVRDLF 299 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~----i~is~s~~~~~-------~~-------g------~~~~~vr~lF 299 (676)
.+.|.++||+||+|+||+++|.++|..+-+.= -.+.+..+... ++ | .+.+.+|++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 36688899999999999999999998763210 00011001000 00 0 1234566666
Q ss_pred HHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCcc
Q 005815 300 NKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRF 375 (676)
Q Consensus 300 ~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRf 375 (676)
+.+... .-.|++||++|.+. ....|.||+.++... .++++|..|+.++.|.|.+++ |+
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEPp--~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEEPS--PGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhCCC--CCCeEEEEECChhhCchHHHh--hh
Confidence 654432 23699999999994 457789999998654 456777788889999999998 87
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcH
Q 005815 376 DRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSG 420 (676)
Q Consensus 376 d~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sg 420 (676)
..+.|+.|+.++-.+.|... ..+ ..+...++..+.|-.+
T Consensus 165 -q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 165 -QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred -eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 68899999988777777542 222 2224455666666443
No 224
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.64 E-value=1e-07 Score=106.49 Aligned_cols=203 Identities=24% Similarity=0.324 Sum_probs=122.2
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHh---
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFV--- 288 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~--- 288 (676)
.++|.......+.+-+..+.. ....++++|.+||||+++|+++.... +.||+.++|........
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 466666665555444433321 23469999999999999999997654 57999999986543221
Q ss_pred --hhhhH-------HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC-----C----C
Q 005815 289 --GVGAS-------RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-----G----N 350 (676)
Q Consensus 289 --g~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-----~----~ 350 (676)
|.... .....|.. ....+|||||||.+.. . ....|+..++.-. . .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~~-----------~---~q~~l~~~l~~~~~~~~~~~~~~~ 272 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISP-----------M---MQVRLLRAIQEREVQRVGSNQTIS 272 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCCH-----------H---HHHHHHHHHccCcEEeCCCCceee
Confidence 11000 00011222 2357999999999942 2 2334444443211 0 1
Q ss_pred CCeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcC------C---CCCccccHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSNN------K---KLDKDVSLSV 410 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~~------~---~l~~d~dl~~ 410 (676)
.++.+|++|+.+-. .+..+|+|.. .+.+..|+..+|.+ ++++++.. . .+++ ..+..
T Consensus 273 ~~~rii~~t~~~~~---~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~-~a~~~ 348 (441)
T PRK10365 273 VDVRLIAATHRDLA---AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP-QAMDL 348 (441)
T ss_pred eceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCH-HHHHH
Confidence 24678888876421 3334455543 56777788888854 33333322 1 1233 33677
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 411 IATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 411 La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
|....+.-+.++|+++++.|...+ ....|+.+|+...+
T Consensus 349 L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 349 LIHYDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 777777678899999999987653 45678888886554
No 225
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=4.5e-07 Score=97.34 Aligned_cols=130 Identities=17% Similarity=0.235 Sum_probs=94.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEechhHHHHHhhhhhHHHHHHH
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSLSGSEFIEMFVGVGASRVRDLF 299 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------------------------~i~is~s~~~~~~~g~~~~~vr~lF 299 (676)
.+.|.++||+||+|+||+++|+++|..+-+. |+.+...+ . ..-+.+.+|++.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~--~~I~id~iR~l~ 96 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--N--KDIGVDQVREIN 96 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--C--CCCCHHHHHHHH
Confidence 3567889999999999999999999976321 12221100 0 011345667665
Q ss_pred HHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCcc
Q 005815 300 NKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRF 375 (676)
Q Consensus 300 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRf 375 (676)
+.+.. ..-.|++||++|.+. ....|.||..+++- ..++++|.+|+.++.|.|.+++ |+
T Consensus 97 ~~~~~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEEP--p~~~~fiL~t~~~~~llpTI~S--RC 158 (325)
T PRK06871 97 EKVSQHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEEP--RPNTYFLLQADLSAALLPTIYS--RC 158 (325)
T ss_pred HHHhhccccCCceEEEEechhhhC--------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhCchHHHh--hc
Confidence 55433 334699999999994 45779999999864 4567888888889999999988 87
Q ss_pred ceEEecCCCCHHHHHHHHHHH
Q 005815 376 DRQVSVGLPDIRGREQILKVH 396 (676)
Q Consensus 376 d~~I~v~~Pd~~~R~~IL~~~ 396 (676)
..+.|++|+.++-.+.|...
T Consensus 159 -~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 159 -QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -eEEeCCCCCHHHHHHHHHHH
Confidence 68899999998888777754
No 226
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.64 E-value=8.3e-07 Score=91.77 Aligned_cols=129 Identities=21% Similarity=0.302 Sum_probs=85.0
Q ss_pred CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC------------cccccccccCCCc
Q 005815 307 PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR------------PEILDSALHRPGR 374 (676)
Q Consensus 307 P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~------------~~~Ld~aLlrpGR 374 (676)
|.||||||+|-| +-+.-..+|.-|.. .+ .+ ++|.+||+ |.-++-.++. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~--d~---~P-iiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN--DM---AP-IIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh--cc---Cc-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 667777777666 23333445544432 11 12 55555664 3345555655 5
Q ss_pred cceEEecCCCCHHHHHHHHHHHhcCCCCCccc-cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 005815 375 FDRQVSVGLPDIRGREQILKVHSNNKKLDKDV-SLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDR 453 (676)
Q Consensus 375 fd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~-dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~ 453 (676)
. ..|...+...++.++||+..+....+.-+. .+..|......-+-+---+|+..|...+.++....+..+|++.+..-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 4 467777889999999999998776544222 24555555454556666689999999999999999999999999765
Q ss_pred HH
Q 005815 454 IV 455 (676)
Q Consensus 454 v~ 455 (676)
.+
T Consensus 429 Fl 430 (454)
T KOG2680|consen 429 FL 430 (454)
T ss_pred Hh
Confidence 54
No 227
>PRK06526 transposase; Provisional
Probab=98.63 E-value=1.6e-07 Score=97.67 Aligned_cols=100 Identities=25% Similarity=0.394 Sum_probs=65.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhhh-hHHHHHHHHHHhhCCCeEEEEcCCccccccC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGVG-ASRVRDLFNKAKANSPCLVFIDEIDAVGRQR 322 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 322 (676)
+.+++|+||||||||+||.+++.++ |..+..++..++.+...... .......+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~--- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP--- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---
Confidence 4679999999999999999998875 77888888888876643211 11222333322 346799999998873
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 323 GTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 323 ~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
.+......+.+++..... +. .+|.+||.+
T Consensus 173 ------~~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 173 ------FEPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ------CCHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 123344556666654321 12 366677764
No 228
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=5e-07 Score=97.61 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=101.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEechhHHHHHhhhhhHHHHHHH
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSLSGSEFIEMFVGVGASRVRDLF 299 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------------------------~i~is~s~~~~~~~g~~~~~vr~lF 299 (676)
.+.|.++||+||+|+||+++|+++|..+-+. ++.+....- . ..-+.+.+|++.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHH
Confidence 4678899999999999999999999876321 112211000 0 011234566665
Q ss_pred HHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCcc
Q 005815 300 NKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRF 375 (676)
Q Consensus 300 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRf 375 (676)
+.+.. ..-.|++||++|.+. .+..|.||+.+++- ..+.++|..|+.++.|.|.+++ |+
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RC 159 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RC 159 (334)
T ss_pred HHHhhccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--cc
Confidence 55432 334699999999994 45789999999864 4567888888999999999998 88
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCC
Q 005815 376 DRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGF 418 (676)
Q Consensus 376 d~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~ 418 (676)
. .+.+++|+.++..+.|.... ..+.+ +...++..+.|-
T Consensus 160 q-~~~~~~~~~~~~~~~L~~~~---~~~~~-~a~~~~~la~G~ 197 (334)
T PRK07993 160 R-LHYLAPPPEQYALTWLSREV---TMSQD-ALLAALRLSAGA 197 (334)
T ss_pred c-cccCCCCCHHHHHHHHHHcc---CCCHH-HHHHHHHHcCCC
Confidence 5 68999999888777765421 22222 244556666663
No 229
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.58 E-value=8.9e-08 Score=108.01 Aligned_cols=229 Identities=26% Similarity=0.343 Sum_probs=135.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--CCCEEEEechhHHHH-----Hhhhh--------hHHHHHHHHHHhhCCCeEEEEc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA--GVPFFSLSGSEFIEM-----FVGVG--------ASRVRDLFNKAKANSPCLVFID 313 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~--~~p~i~is~s~~~~~-----~~g~~--------~~~vr~lF~~A~~~~P~ILfID 313 (676)
.+|+.|.+||||-.|+|++-... ..||+.++|..+.+. ++|.. .+..+..+++|.. ..+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHHH
Confidence 49999999999999999996654 679999999765543 22221 1222333444433 399999
Q ss_pred CCccccccCCCCCCCCChHHHHHHHHHHHH-----hccCCCCCCeEEEEecCCcccccccccCCCccce-------EEec
Q 005815 314 EIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MDGFTGNSGVIVIAATNRPEILDSALHRPGRFDR-------QVSV 381 (676)
Q Consensus 314 EID~l~~~r~~~~~~~~~~~~~~l~~LL~~-----ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v 381 (676)
||..+. -..+..+-+.|.+ +.+-...-.|-||+||+++-. .|.+-|||.+ ...+
T Consensus 415 eIgd~p-----------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~~~~i 480 (606)
T COG3284 415 EIGDMP-----------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLNAFVI 480 (606)
T ss_pred Hhhhch-----------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhcCeee
Confidence 998872 2233334444443 122222225789999998633 6777888865 4566
Q ss_pred CCCCHHHHHH---HHHHHhcCC-----CCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 005815 382 GLPDIRGREQ---ILKVHSNNK-----KLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDR 453 (676)
Q Consensus 382 ~~Pd~~~R~~---IL~~~l~~~-----~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~ 453 (676)
.+|...+|.+ .|.+++... .++++. +..|...-+.-|.++|.++++.++..+ ....|...|+...+..
T Consensus 481 ~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~-~~~l~~~~WPGNirel~~v~~~~~~l~---~~g~~~~~dlp~~l~~ 556 (606)
T COG3284 481 TLPPLRERSDRIPLLDRILKRENDWRLQLDDDA-LARLLAYRWPGNIRELDNVIERLAALS---DGGRIRVSDLPPELLE 556 (606)
T ss_pred ccCchhcccccHHHHHHHHHHccCCCccCCHHH-HHHHHhCCCCCcHHHHHHHHHHHHHcC---CCCeeEcccCCHHHHh
Confidence 6788888754 333333222 233333 344444444447889999988887655 5566777777766654
Q ss_pred HHcCcCCCcccc-ccchhhhHHHHHH--HHHHHHhCCCCCCCceeeeccCCCccce
Q 005815 454 IVAGMEGTKMTD-GKNKILVAYHEIG--HAVCATLTPGHDPVQKVTLIPRGQARGL 506 (676)
Q Consensus 454 v~~g~~~~~~~~-~~~~~~~A~hEag--hal~a~~l~~~~~v~~vti~~r~~~~G~ 506 (676)
...+. ..+ +++..+-|+.-.+ .--++..++ +.+.|++.+.+..|.
T Consensus 557 ~~~~~----~~~~~~~~l~~al~~~~~~is~aa~~lg----i~R~T~yrklk~~gi 604 (606)
T COG3284 557 EQATP----REDIEKAALLAALQATNGNISEAARLLG----ISRSTLYRKLKRHGI 604 (606)
T ss_pred hhccc----ccchHHHHHHHHHHHcCCCHHHHHHHhC----CCHHHHHHHHHHhCC
Confidence 32222 222 2223333333222 223455665 778888888776664
No 230
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.56 E-value=1.5e-08 Score=93.55 Aligned_cols=111 Identities=31% Similarity=0.363 Sum_probs=57.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEech-hHH-HHHhhhhhHHH-HHHHHHHhh-CCCeEEEEcCCccccccCCC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS-EFI-EMFVGVGASRV-RDLFNKAKA-NSPCLVFIDEIDAVGRQRGT 324 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s-~~~-~~~~g~~~~~v-r~lF~~A~~-~~P~ILfIDEID~l~~~r~~ 324 (676)
+|||.|+||+|||++|+++|+.++..|..+.+. ++. ....|..--.. ...|...+. --..|+++|||...-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 489999999999999999999999999988764 332 12222100000 000000000 001499999997763
Q ss_pred CCCCCChHHHHHHHHHHHHhccC---------CCCCCeEEEEecCCcc-----cccccccCCCcc
Q 005815 325 GIGGGNDEREQTLNQLLTEMDGF---------TGNSGVIVIAATNRPE-----ILDSALHRPGRF 375 (676)
Q Consensus 325 ~~~~~~~~~~~~l~~LL~~ld~~---------~~~~~ViVIaaTN~~~-----~Ld~aLlrpGRf 375 (676)
.++...||+.|.+- .-..+++||||-|..+ .|+++++. ||
T Consensus 76 ---------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 ---------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ---------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 33556666666432 2234689999999876 47777776 76
No 231
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.54 E-value=1.1e-06 Score=92.95 Aligned_cols=208 Identities=26% Similarity=0.385 Sum_probs=129.7
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFI 284 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~ 284 (676)
+....|+.+++.....+.+.+-...+.. ....+||.|..||||-++||+..... ..||+.+||..+-
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~Am----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAM----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhc----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 4556788888887766655443332211 12249999999999999999986654 7899999998765
Q ss_pred HH-----Hhhhh--hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc-CCC-------
Q 005815 285 EM-----FVGVG--ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-FTG------- 349 (676)
Q Consensus 285 ~~-----~~g~~--~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~-~~~------- 349 (676)
+. ..|.. .+.-..+|+.|... .+|+|||..+. ...+.-+-.||+ || |..
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmS-----------p~lQaKLLRFL~--DGtFRRVGee~Ev 331 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMS-----------PRLQAKLLRFLN--DGTFRRVGEDHEV 331 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcC-----------HHHHHHHHHHhc--CCceeecCCcceE
Confidence 43 22322 24456788887655 89999998883 333334444443 22 111
Q ss_pred CCCeEEEEecCCcccccccccCCCccc-------eEEecCCCCHHHHHH--------HHHHHhcCCC-----CCccccHH
Q 005815 350 NSGVIVIAATNRPEILDSALHRPGRFD-------RQVSVGLPDIRGREQ--------ILKVHSNNKK-----LDKDVSLS 409 (676)
Q Consensus 350 ~~~ViVIaaTN~~~~Ld~aLlrpGRfd-------~~I~v~~Pd~~~R~~--------IL~~~l~~~~-----l~~d~dl~ 409 (676)
.-+|.|||||..+-. .+...|+|. .++.+..|...+|.. ++..+..+.. ++++. +.
T Consensus 332 ~vdVRVIcatq~nL~---~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~-~~ 407 (511)
T COG3283 332 HVDVRVICATQVNLV---ELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADL-LT 407 (511)
T ss_pred EEEEEEEecccccHH---HHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHH-HH
Confidence 124899999987522 222233332 277788898888843 2333443333 22232 56
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 005815 410 VIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEID 448 (676)
Q Consensus 410 ~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~ 448 (676)
.+.+..+.-+.++|.|.+-+|.... ....++.+||.
T Consensus 408 ~L~~y~WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 408 VLTRYAWPGNVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 6667666668899999888887655 34556666654
No 232
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.53 E-value=9.1e-07 Score=89.03 Aligned_cols=164 Identities=23% Similarity=0.304 Sum_probs=86.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC---CEEEEec-h----hHHHHH-------------h-----------------
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSLSG-S----EFIEMF-------------V----------------- 288 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~---p~i~is~-s----~~~~~~-------------~----------------- 288 (676)
...++|+||.|+|||+|++.+.....- ..++++. . +....+ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 356999999999999999999998732 1222211 0 000000 0
Q ss_pred hhhhHHHHHHHHHHhhCC-CeEEEEcCCcccc-ccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 289 GVGASRVRDLFNKAKANS-PCLVFIDEIDAVG-RQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 289 g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~-~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
......+..+++...... ..||+|||++.+. ... .....+..|...++......++.+|.++.......
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 011234556666655443 4899999999996 211 12334455555555444445554444433322211
Q ss_pred ------ccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC-C-CccccHHHHHHhCCCCcHHHH
Q 005815 367 ------SALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK-L-DKDVSLSVIATRTPGFSGADL 423 (676)
Q Consensus 367 ------~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~-l-~~d~dl~~La~~t~G~sgadL 423 (676)
..+. +|+.. +.+++-+.++..++++..+.... + .++.+++.+...+.|. |+-|
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRYL 231 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHH
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHHH
Confidence 1222 47766 99999999999999998776551 1 2455678888888774 4444
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.52 E-value=7.4e-07 Score=96.00 Aligned_cols=99 Identities=23% Similarity=0.325 Sum_probs=63.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhhh---hHHHHHHHHHHhhCCCeEEEEcCCcccccc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGVG---ASRVRDLFNKAKANSPCLVFIDEIDAVGRQ 321 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 321 (676)
.+++|+||+|||||+|+.|+|+++ |..+++++..++...+.... .......++.. ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999987 78899999999877543210 11112223333 344699999997763
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 322 RGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 322 r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
..+.....+..++...- .+ +-.+|.|||.
T Consensus 260 -------~t~~~~~~Lf~iin~R~---~~-~k~tIiTSNl 288 (329)
T PRK06835 260 -------ITEFSKSELFNLINKRL---LR-QKKMIISTNL 288 (329)
T ss_pred -------CCHHHHHHHHHHHHHHH---HC-CCCEEEECCC
Confidence 23344445555555431 11 1236666674
No 234
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.51 E-value=1.9e-07 Score=87.92 Aligned_cols=106 Identities=28% Similarity=0.482 Sum_probs=68.1
Q ss_pred ccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhHHHHHhhhhhH
Q 005815 217 AGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSLSGSEFIEMFVGVGAS 293 (676)
Q Consensus 217 ~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~---~p~i~is~s~~~~~~~g~~~~ 293 (676)
+|...+.+.+++-+..+... ...|+|+|++||||+++|+++....+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46667777777766655432 34699999999999999999998764 477777776533
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
.++++.+ ....|||+|+|.+. .+.+..+.+++... . ..++.+|+++..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~-----------~~~Q~~L~~~l~~~---~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLS-----------PEAQRRLLDLLKRQ---E-RSNVRLIASSSQ 109 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHC---T-TTTSEEEEEECC
T ss_pred --HHHHHHc---CCCEEEECChHHCC-----------HHHHHHHHHHHHhc---C-CCCeEEEEEeCC
Confidence 3355554 45699999999993 33444444444442 2 344566666654
No 235
>PF13173 AAA_14: AAA domain
Probab=98.50 E-value=1.1e-06 Score=81.73 Aligned_cols=120 Identities=22% Similarity=0.273 Sum_probs=72.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTG 325 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~ 325 (676)
+.++|+||.|+|||++++.++.... ..+++++..+......... + +.+.+.......+.+|||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4589999999999999999998876 7788888877654321111 0 2233333222356899999998882
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccc--cccCCCccceEEecCCCCHHH
Q 005815 326 IGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDS--ALHRPGRFDRQVSVGLPDIRG 388 (676)
Q Consensus 326 ~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~--aLlrpGRfd~~I~v~~Pd~~~ 388 (676)
.....+..+...- .++-+|.|+.....+.. +-.-+||.. .+++.+.+..|
T Consensus 75 ------~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 2444555555521 22334444333322211 122246774 67777777654
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=98.49 E-value=9e-07 Score=92.41 Aligned_cols=71 Identities=28% Similarity=0.475 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhh-hhHHHHHHHHHHhhCCCeEEEEcCCccc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGV-GASRVRDLFNKAKANSPCLVFIDEIDAV 318 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~-~~~~vr~lF~~A~~~~P~ILfIDEID~l 318 (676)
..+++|+||||||||+|+.+++.++ |..+.++++.++...+... ....+...|... ...+++++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3569999999999999999997764 7788888888877554221 112244455443 345689999999876
No 237
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=7.2e-07 Score=96.04 Aligned_cols=133 Identities=17% Similarity=0.270 Sum_probs=91.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-------------------------CEEEEechhH---HHH-HhhhhhHH
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------------------------PFFSLSGSEF---IEM-FVGVGASR 294 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------------------------p~i~is~s~~---~~~-~~g~~~~~ 294 (676)
.+.|.++||+||+|+|||++|+++|+.+.+ .|+.++...- ... ...-+-+.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 377889999999999999999999997632 1333322100 000 00013456
Q ss_pred HHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccccccc
Q 005815 295 VRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALH 370 (676)
Q Consensus 295 vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLl 370 (676)
+|++.+.+.. ....|++||++|.+. ....+.|+..++... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 7777766643 234699999999993 235566777776654 34667778888888888888
Q ss_pred CCCccceEEecCCCCHHHHHHHHHH
Q 005815 371 RPGRFDRQVSVGLPDIRGREQILKV 395 (676)
Q Consensus 371 rpGRfd~~I~v~~Pd~~~R~~IL~~ 395 (676)
+ |+ ..+.|++|+.++..+.|..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 7 76 6889999998887777754
No 238
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=2e-06 Score=92.16 Aligned_cols=130 Identities=21% Similarity=0.238 Sum_probs=92.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------------------CEEEEechhHHHHHhhhhhHHHHHHHH
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------------------PFFSLSGSEFIEMFVGVGASRVRDLFN 300 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-----------------------p~i~is~s~~~~~~~g~~~~~vr~lF~ 300 (676)
.+.|.++||+||.|+||+.+|+++|..+-+ .|+.+.... ... .-+.+.+|++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHH
Confidence 467889999999999999999999987622 122222110 000 012345666554
Q ss_pred HHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccc
Q 005815 301 KAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFD 376 (676)
Q Consensus 301 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd 376 (676)
.+.. ..-.|++||++|.+. ....|.||+.+++. ..++++|..|+.++.|-|.+++ |+
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTI~S--RC- 159 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEEP--APNCLFLLVTHNQKRLLPTIVS--RC- 159 (319)
T ss_pred HHhhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--cc-
Confidence 4432 234699999999994 45778999999864 4557888888889999999988 87
Q ss_pred eEEecCCCCHHHHHHHHHH
Q 005815 377 RQVSVGLPDIRGREQILKV 395 (676)
Q Consensus 377 ~~I~v~~Pd~~~R~~IL~~ 395 (676)
..+.|++|+.++..+.+..
T Consensus 160 q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eeEeCCCCCHHHHHHHHHH
Confidence 6889999998887777754
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.46 E-value=1.6e-06 Score=90.20 Aligned_cols=71 Identities=27% Similarity=0.474 Sum_probs=51.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhhhhH-HHHHHHHHHhhCCCeEEEEcCCccc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGVGAS-RVRDLFNKAKANSPCLVFIDEIDAV 318 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~~~~-~vr~lF~~A~~~~P~ILfIDEID~l 318 (676)
..+++|+||||||||+||-|+++++ |.+++.++..+++......-.. ....-+... -....+|+|||+-..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 5689999999999999999999987 8999999999998764322111 111111110 233469999999775
No 240
>PRK06921 hypothetical protein; Provisional
Probab=98.44 E-value=1.6e-06 Score=90.80 Aligned_cols=68 Identities=28% Similarity=0.365 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCcc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDA 317 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 317 (676)
..+++|+||||+|||+|+.|+|+++ +..+++++..++........ ......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 4679999999999999999999976 67888888877665432211 1122223332 3457999999954
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.42 E-value=5.9e-07 Score=88.54 Aligned_cols=101 Identities=26% Similarity=0.375 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhhh-hHHHHHHHHHHhhCCCeEEEEcCCcccccc
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGVG-ASRVRDLFNKAKANSPCLVFIDEIDAVGRQ 321 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 321 (676)
...|++|+||||||||+||.+++.++ |.++.+++.+++.+...... .......++... ...+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee--
Confidence 35689999999999999999999876 88999999999987653221 112334444443 34699999985431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 322 RGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 322 r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
..++....+.+++..-. .+. -+|.|||..
T Consensus 122 -------~~~~~~~~l~~ii~~R~---~~~--~tIiTSN~~ 150 (178)
T PF01695_consen 122 -------LSEWEAELLFEIIDERY---ERK--PTIITSNLS 150 (178)
T ss_dssp ---------HHHHHCTHHHHHHHH---HT---EEEEEESS-
T ss_pred -------ecccccccchhhhhHhh---ccc--CeEeeCCCc
Confidence 23334444555555432 122 355588854
No 242
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=7.1e-06 Score=89.75 Aligned_cols=202 Identities=19% Similarity=0.240 Sum_probs=125.0
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhHHHH--
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSGSEFIEM-- 286 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~s~~~~~-- 286 (676)
..+.|.+.-+..+++++.. + +...-+..+++.|-||||||.+..-+-... ....++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~---h-----le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSL---H-----LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHh---h-----hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 4466777766666655443 2 122335679999999999999998775544 223477887653211
Q ss_pred --------H----hhhhh-HHHHHHHHH-HhhC-CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCC
Q 005815 287 --------F----VGVGA-SRVRDLFNK-AKAN-SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNS 351 (676)
Q Consensus 287 --------~----~g~~~-~~vr~lF~~-A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~ 351 (676)
+ .+.+. ......|.. .... .+-++++||+|.|..+. +.++..+.. +..+ .+.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFe-wp~l-p~s 288 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFE-WPKL-PNS 288 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehh-cccC-Ccc
Confidence 1 11111 112233332 2222 36799999999997332 123333332 2222 256
Q ss_pred CeEEEEecCCcccccccccC----CCccceEEecCCCCHHHHHHHHHHHhcCCCCCc--cccHHHHHHhCCCCcHHHHHH
Q 005815 352 GVIVIAATNRPEILDSALHR----PGRFDRQVSVGLPDIRGREQILKVHSNNKKLDK--DVSLSVIATRTPGFSGADLAN 425 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlr----pGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~--d~dl~~La~~t~G~sgadL~~ 425 (676)
.+++|+.+|..|.-|-.|-| .+--...+.|++++.++..+||...+....... +..++..|+...|.|| |++.
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRk 367 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRK 367 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHH
Confidence 78999999988765544422 122335889999999999999999988766443 3346788888888776 6664
Q ss_pred ---HHHHHHHHHHHc
Q 005815 426 ---LMNEAAILAGRR 437 (676)
Q Consensus 426 ---lv~~A~~~A~r~ 437 (676)
+|+.|.-++...
T Consensus 368 aLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 368 ALDVCRRAIEIAEIE 382 (529)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666444
No 243
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.1e-06 Score=101.51 Aligned_cols=128 Identities=30% Similarity=0.334 Sum_probs=88.7
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH-----
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM----- 286 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~----- 286 (676)
.|+|++++...+.+.+..-+..-. +. +++-.++|.||.|+|||-||+++|..+ .-.++.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~--~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLK--DP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccC--CC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 389999998888888766432110 00 234459999999999999999999987 457999999987762
Q ss_pred ----HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC---------CCCe
Q 005815 287 ----FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG---------NSGV 353 (676)
Q Consensus 287 ----~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~---------~~~V 353 (676)
|+|. .....+.+..+...-+||++||||.-- ..+++.|+..+|...- -.++
T Consensus 639 sp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh--------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 639 SPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH--------------PDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred CCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC--------------HHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 2222 223345555566666999999998872 3356666666664422 2358
Q ss_pred EEEEecCCc
Q 005815 354 IVIAATNRP 362 (676)
Q Consensus 354 iVIaaTN~~ 362 (676)
|||+|+|.-
T Consensus 703 I~IMTsn~~ 711 (898)
T KOG1051|consen 703 IFIMTSNVG 711 (898)
T ss_pred EEEEecccc
Confidence 999999863
No 244
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.37 E-value=4.7e-06 Score=92.54 Aligned_cols=211 Identities=17% Similarity=0.201 Sum_probs=109.8
Q ss_pred cccccccCCCCCcccccccch----hhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCE
Q 005815 200 KAKFEMEPNTGVTFDDVAGVD----EAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 275 (676)
Q Consensus 200 ~~~~~~~~~~~~~f~dv~G~~----~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~ 275 (676)
....|++++.+-+.++|+-.. +++++|+ .+..+. +. -..+-+||+||+|||||+.++.++.++|..+
T Consensus 68 ~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~-~~~~~~-~~-------l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 68 EFELWVEKYKPRTLEELAVHKKKISEVKQWLK-QVAEFT-PK-------LGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred ccchhHHhcCcccHHHHhhhHHhHHHHHHHHH-HHHHhc-cC-------CCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 346788899999999987543 3444444 222211 11 1123488999999999999999999999877
Q ss_pred EEEec-------h------hHHHHHhhhhhHHHHHHHHHH------------hhCCCeEEEEcCCccccccCCCCCCCCC
Q 005815 276 FSLSG-------S------EFIEMFVGVGASRVRDLFNKA------------KANSPCLVFIDEIDAVGRQRGTGIGGGN 330 (676)
Q Consensus 276 i~is~-------s------~~~~~~~g~~~~~vr~lF~~A------------~~~~P~ILfIDEID~l~~~r~~~~~~~~ 330 (676)
+.-+. + .+........-.........+ ....|.+|+|||+-..+...
T Consensus 139 ~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------- 210 (634)
T KOG1970|consen 139 IEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------- 210 (634)
T ss_pred eeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh--------
Confidence 76641 1 111100111011111122222 12356799999998775321
Q ss_pred hHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCC------CccceEEecCCCCHHHHHHHHHHHhcCCC---
Q 005815 331 DEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRP------GRFDRQVSVGLPDIRGREQILKVHSNNKK--- 401 (676)
Q Consensus 331 ~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrp------GRfd~~I~v~~Pd~~~R~~IL~~~l~~~~--- 401 (676)
....+..+|.+.-......-|++|.-++.++..++..+.+ .|+ .+|.|.+-...--++.|+..+....
T Consensus 211 --~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~ 287 (634)
T KOG1970|consen 211 --DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKK 287 (634)
T ss_pred --hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccc
Confidence 1222333333222111222233333333334433332222 144 2667766555445555554443221
Q ss_pred ----CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 402 ----LDKDVSLSVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 402 ----l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
+.....++.++.. +++||+..++...+.+
T Consensus 288 s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 288 SGIKVPDTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred cCCcCchhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 1223334555554 4569999999988876
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=3.2e-06 Score=77.84 Aligned_cols=85 Identities=24% Similarity=0.368 Sum_probs=53.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEechhHH------HHHh---h------hhhHHHHH-HHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSLSGSEFI------EMFV---G------VGASRVRD-LFNKAK 303 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~--------~~p~i~is~s~~~------~~~~---g------~~~~~vr~-lF~~A~ 303 (676)
+.++++||||+|||++++.++... ..+++.+++.... .... + .....+.+ +.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 459999999999999999999987 7788888776543 1111 0 11222223 333344
Q ss_pred hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc
Q 005815 304 ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 345 (676)
Q Consensus 304 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld 345 (676)
.....+|+|||+|.+. ....++.|...++
T Consensus 85 ~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN 113 (131)
T ss_dssp HCTEEEEEEETTHHHH-------------THHHHHHHHHHTC
T ss_pred hcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh
Confidence 4444699999999983 1346666655555
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=3.3e-06 Score=79.93 Aligned_cols=110 Identities=26% Similarity=0.302 Sum_probs=64.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHh----------------------hh--hhHHHHHHHHHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFV----------------------GV--GASRVRDLFNKA 302 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~----------------------g~--~~~~vr~lF~~A 302 (676)
++|+||||+|||++++.++..+ +.++++++......... .. .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 56777776643322110 00 001112234556
Q ss_pred hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc
Q 005815 303 KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363 (676)
Q Consensus 303 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~ 363 (676)
....|.+|+|||+..+..................+..++..+. ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6678899999999998643211001122233445555555442 34566666666544
No 247
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.24 E-value=3.6e-05 Score=78.73 Aligned_cols=183 Identities=20% Similarity=0.247 Sum_probs=116.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC---CCEEEEec-----hhHHHHHhhhhh------------HHHHHHHHHHh-hCCCe
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAG---VPFFSLSG-----SEFIEMFVGVGA------------SRVRDLFNKAK-ANSPC 308 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~---~p~i~is~-----s~~~~~~~g~~~------------~~vr~lF~~A~-~~~P~ 308 (676)
+.++|+.|+|||.+.||+....+ +..++++. +.+.+.++.... ..-+.+.+..+ ...|.
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 78899999999999997776653 22334432 333333322211 11223333333 35568
Q ss_pred EEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCC------CccceEEecC
Q 005815 309 LVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRP------GRFDRQVSVG 382 (676)
Q Consensus 309 ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrp------GRfd~~I~v~ 382 (676)
++++||.+.+.. .....+.-|.+.-+++...-.|+.|+-.. |.+.+++| -|++..|+++
T Consensus 134 ~l~vdEah~L~~-----------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 134 VLMVDEAHDLND-----------SALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred EEeehhHhhhCh-----------hHHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEecC
Confidence 999999999942 12233333333333333333466666432 33322222 2787778888
Q ss_pred CCCHHHHHHHHHHHhcCCCC----CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 005815 383 LPDIRGREQILKVHSNNKKL----DKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEID 448 (676)
Q Consensus 383 ~Pd~~~R~~IL~~~l~~~~l----~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~ 448 (676)
+.+.++-..+++++++.-.. -.+..+..+...+.| .+.-|.+++..|...|...+...|+...++
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 88988888999988876543 234446778888888 578899999999999998898888877654
No 248
>PF05729 NACHT: NACHT domain
Probab=98.24 E-value=1.3e-05 Score=76.24 Aligned_cols=142 Identities=18% Similarity=0.249 Sum_probs=74.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc------C--CC-EEEEechhHHHH---------H---hhhhhHHHHHH-HHHHhhCC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA------G--VP-FFSLSGSEFIEM---------F---VGVGASRVRDL-FNKAKANS 306 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~------~--~p-~i~is~s~~~~~---------~---~g~~~~~vr~l-F~~A~~~~ 306 (676)
-++|+|+||+|||++++.++..+ . .+ ++.+++.+.... . ........... ...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48899999999999999999766 1 12 233343333221 0 01111111221 22234456
Q ss_pred CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCH
Q 005815 307 PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDI 386 (676)
Q Consensus 307 P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~ 386 (676)
+.+|+||.+|.+...... .........+.+++.. ....+..++|.+.+.....+...+.. ...+.+..-+.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCCH
Confidence 789999999999642211 0011122233333332 01222233333322222223323322 15788888899
Q ss_pred HHHHHHHHHHhcC
Q 005815 387 RGREQILKVHSNN 399 (676)
Q Consensus 387 ~~R~~IL~~~l~~ 399 (676)
++..++++.++++
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988764
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.16 E-value=5.3e-06 Score=87.26 Aligned_cols=137 Identities=20% Similarity=0.312 Sum_probs=73.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC-C--EEEEechhHHHHHhhhhhHHHHHHHHHH-----------hhCCCeEEEEc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGV-P--FFSLSGSEFIEMFVGVGASRVRDLFNKA-----------KANSPCLVFID 313 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~-p--~i~is~s~~~~~~~g~~~~~vr~lF~~A-----------~~~~P~ILfID 313 (676)
+.+||+||+|||||.+++..-....- . ...++.+.... +..++.+.+.. .....+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 46999999999999999988776532 2 22344433221 12222222211 11344799999
Q ss_pred CCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC-------CCeEEEEecCCcc---cccccccCCCccceEEecCC
Q 005815 314 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN-------SGVIVIAATNRPE---ILDSALHRPGRFDRQVSVGL 383 (676)
Q Consensus 314 EID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~-------~~ViVIaaTN~~~---~Ld~aLlrpGRfd~~I~v~~ 383 (676)
|+..-....- +....-+.+.|++..---+... .++.+|||++... .+++.++| .| ..+.++.
T Consensus 108 DlN~p~~d~y-----gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~ 179 (272)
T PF12775_consen 108 DLNMPQPDKY-----GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPY 179 (272)
T ss_dssp TTT-S---TT-----S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE---
T ss_pred ccCCCCCCCC-----CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecC
Confidence 9976532211 1111223444444332111111 2578889888542 37788887 66 5889999
Q ss_pred CCHHHHHHHHHHHhc
Q 005815 384 PDIRGREQILKVHSN 398 (676)
Q Consensus 384 Pd~~~R~~IL~~~l~ 398 (676)
|+.+....|+..++.
T Consensus 180 p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 180 PSDESLNTIFSSILQ 194 (272)
T ss_dssp -TCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 999988887766554
No 250
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.16 E-value=9.4e-06 Score=81.52 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=65.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH-Hhhh----------------------hhHHHHHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM-FVGV----------------------GASRVRDLFNK 301 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~-~~g~----------------------~~~~vr~lF~~ 301 (676)
.-++++||||+|||+++..++... +.++++++..++... +... ....+..+.+.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 92 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKF 92 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHH
Confidence 348999999999999999988644 667888887642111 1000 01113333444
Q ss_pred HhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 302 AKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 302 A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
+....|++|+||-+..+...... .......+.+..++..+..+....++.+|.+....
T Consensus 93 ~~~~~~~lvVIDSis~l~~~~~~---~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~ 150 (209)
T TIGR02237 93 IDRDSASLVVVDSFTALYRLELS---DDRISRNRELARQLTLLLSLARKKNLAVVITNQVY 150 (209)
T ss_pred HhhcCccEEEEeCcHHHhHHHhC---CccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccE
Confidence 55567899999999998642111 01112233344444444444445667777765433
No 251
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.15 E-value=2e-05 Score=80.91 Aligned_cols=126 Identities=22% Similarity=0.280 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGI 326 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 326 (676)
..|..++||+|||||..+|++|..+|.+++.++|++-.+. ..+..+|.-+... -+.+.+||++.+-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~------- 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLS------- 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSS-------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhhh-------
Confidence 3577899999999999999999999999999999985543 4566666554443 3699999999983
Q ss_pred CCCChHHHHHHHHHHHHh----ccC-----------CCCCCeEEEEecCC----cccccccccCCCccceEEecCCCCHH
Q 005815 327 GGGNDEREQTLNQLLTEM----DGF-----------TGNSGVIVIAATNR----PEILDSALHRPGRFDRQVSVGLPDIR 387 (676)
Q Consensus 327 ~~~~~~~~~~l~~LL~~l----d~~-----------~~~~~ViVIaaTN~----~~~Ld~aLlrpGRfd~~I~v~~Pd~~ 387 (676)
.+.-.++.+.+..+ ..- .-+.+.-++.|.|. ...|++.|+. +-|.+.+..||..
T Consensus 98 ----~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~ 170 (231)
T PF12774_consen 98 ----EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLS 170 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HH
T ss_pred ----HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHH
Confidence 23333333333332 110 00122345555552 2457777766 4489999999987
Q ss_pred HHHHHH
Q 005815 388 GREQIL 393 (676)
Q Consensus 388 ~R~~IL 393 (676)
.-.+++
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 252
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.13 E-value=5.9e-06 Score=95.69 Aligned_cols=219 Identities=26% Similarity=0.315 Sum_probs=119.0
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCC--CCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEE-echhHHHHHhhh
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGA--KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL-SGSEFIEMFVGV 290 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~--~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i-s~s~~~~~~~g~ 290 (676)
-.|.|++.+|+.+. +..+....+...-|. +-.-+|||.|-||||||.|.|.+++-+-..++.- .++. -+|.
T Consensus 286 PsIyG~e~VKkAil--LqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAIL--LQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGL 359 (682)
T ss_pred ccccCcHHHHHHHH--HHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCc
Confidence 34678888777663 222222222111111 2223599999999999999999998874433321 1111 1223
Q ss_pred hhHHHHHHH--H---HH---hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC----C-------CC
Q 005815 291 GASRVRDLF--N---KA---KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT----G-------NS 351 (676)
Q Consensus 291 ~~~~vr~lF--~---~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~----~-------~~ 351 (676)
++..+++-+ + .| ....+.|..|||+|.+- ++ -.+.+...|+... + +.
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~-----------~~---dr~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN-----------EE---DRVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC-----------hH---HHHHHHHHHHhcEeeecccceeeecch
Confidence 332223222 1 00 11345699999999983 11 2233444444211 0 22
Q ss_pred CeEEEEecCCcc-------------cccccccCCCccceEEec-CCCCHHHHHH----HHHHHhcCCC------------
Q 005815 352 GVIVIAATNRPE-------------ILDSALHRPGRFDRQVSV-GLPDIRGREQ----ILKVHSNNKK------------ 401 (676)
Q Consensus 352 ~ViVIaaTN~~~-------------~Ld~aLlrpGRfd~~I~v-~~Pd~~~R~~----IL~~~l~~~~------------ 401 (676)
..-|+||+|... .|++.|++ |||..+.+ +.||.+.=+. ++..|.....
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 356888999754 27788999 99986655 4566543222 4444421110
Q ss_pred ------------------CC---ccccHHHHHH---------------hCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 005815 402 ------------------LD---KDVSLSVIAT---------------RTPGFSGADLANLMNEAAILAGRRGKANITLK 445 (676)
Q Consensus 402 ------------------l~---~d~dl~~La~---------------~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~ 445 (676)
.. .+...+.|.+ .+...+.++|+.+++-|-..|.-+-+..|+.+
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEE 583 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHH
Confidence 00 0000111110 11225677888888888878877777888888
Q ss_pred HHHHHHHHH
Q 005815 446 EIDDSIDRI 454 (676)
Q Consensus 446 di~~Ai~~v 454 (676)
|+++|++-+
T Consensus 584 D~~eAi~lv 592 (682)
T COG1241 584 DVDEAIRLV 592 (682)
T ss_pred HHHHHHHHH
Confidence 888887544
No 253
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.12 E-value=9.9e-06 Score=88.40 Aligned_cols=140 Identities=24% Similarity=0.330 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCC-CEEEEechhHHHHHhhh------hhHHHHHHHHHHhhCCCeEEEEcCCc
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSLSGSEFIEMFVGV------GASRVRDLFNKAKANSPCLVFIDEID 316 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-p~i~is~s~~~~~~~g~------~~~~vr~lF~~A~~~~P~ILfIDEID 316 (676)
...|+|++||||+|+|||+|.-.+...+.. .=..+.-.+|....-.. ....+..+-+.. ...-.+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l-~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL-AKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH-HhcCCEEEEeeee
Confidence 457899999999999999999999887643 11222222332211000 111122222222 2233499999986
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc-ccccccccCCCccceEEecCCCCHHHHHHHHHH
Q 005815 317 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP-EILDSALHRPGRFDRQVSVGLPDIRGREQILKV 395 (676)
Q Consensus 317 ~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~-~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~ 395 (676)
.- +-....++..|+..+- ..++++|+|+|++ +.|- ++.+.+...+ | -.++|+.
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly-----~~gl~r~~Fl--p----~I~~l~~ 191 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLY-----KNGLQRERFL--P----FIDLLKR 191 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHc-----CCcccHHHHH--H----HHHHHHh
Confidence 54 1222446667777662 3678999999964 3332 2223222111 2 2456777
Q ss_pred HhcCCCCCccccHHH
Q 005815 396 HSNNKKLDKDVSLSV 410 (676)
Q Consensus 396 ~l~~~~l~~d~dl~~ 410 (676)
++.-..++...|...
T Consensus 192 ~~~vv~ld~~~DyR~ 206 (362)
T PF03969_consen 192 RCDVVELDGGVDYRR 206 (362)
T ss_pred ceEEEEecCCCchhh
Confidence 776666766666654
No 254
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.08 E-value=5.7e-05 Score=94.52 Aligned_cols=179 Identities=20% Similarity=0.289 Sum_probs=102.1
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCE---EEEech----
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSLSGS---- 281 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~---i~is~s---- 281 (676)
+...+++++|.+...+++..++.. .....+-+-|+||+|+||||||+++++.....| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345688999999988888766532 122245589999999999999999988764332 111110
Q ss_pred ---hHH-------HHHhhhhhHHHH-------------HHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHH
Q 005815 282 ---EFI-------EMFVGVGASRVR-------------DLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLN 338 (676)
Q Consensus 282 ---~~~-------~~~~g~~~~~vr-------------~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~ 338 (676)
.+. ..........+. ..+......++.+|+||++|.. ..+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------~~l~ 312 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------DVLD 312 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------HHHH
Confidence 000 000000000000 1122223456789999998654 1234
Q ss_pred HHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--c-HHHHHHhC
Q 005815 339 QLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDV--S-LSVIATRT 415 (676)
Q Consensus 339 ~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~--d-l~~La~~t 415 (676)
.+....+.+. .+-.||.||+..+.+ +....++.+.++.|+.++..+++..++.+....++. + ...+++.+
T Consensus 313 ~L~~~~~~~~--~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 313 ALAGQTQWFG--SGSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRA 385 (1153)
T ss_pred HHHhhCccCC--CCcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 4443333332 233455566654433 222467889999999999999998887544322211 1 24566777
Q ss_pred CCCcH
Q 005815 416 PGFSG 420 (676)
Q Consensus 416 ~G~sg 420 (676)
.|..-
T Consensus 386 ~GLPL 390 (1153)
T PLN03210 386 GNLPL 390 (1153)
T ss_pred CCCcH
Confidence 77653
No 255
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.07 E-value=3.2e-05 Score=74.44 Aligned_cols=62 Identities=16% Similarity=0.333 Sum_probs=38.5
Q ss_pred hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecC
Q 005815 303 KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 303 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~ 382 (676)
....|.||++||+-+-. +....+.++.++... ....++-|+..|+.++. ++ | -+++.|.+.
T Consensus 148 Lq~~P~ILLLDE~TsAL----------D~~nkr~ie~mi~~~---v~~q~vAv~WiTHd~dq---a~-r--ha~k~itl~ 208 (223)
T COG4619 148 LQFMPKILLLDEITSAL----------DESNKRNIEEMIHRY---VREQNVAVLWITHDKDQ---AI-R--HADKVITLQ 208 (223)
T ss_pred hhcCCceEEecCchhhc----------ChhhHHHHHHHHHHH---hhhhceEEEEEecChHH---Hh-h--hhheEEEec
Confidence 34679999999998765 222344455544433 12456888888888654 23 2 467777664
Q ss_pred C
Q 005815 383 L 383 (676)
Q Consensus 383 ~ 383 (676)
+
T Consensus 209 ~ 209 (223)
T COG4619 209 P 209 (223)
T ss_pred c
Confidence 3
No 256
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.04 E-value=3.8e-05 Score=86.57 Aligned_cols=221 Identities=19% Similarity=0.232 Sum_probs=119.3
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhh--hCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhh
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAA--VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGV 290 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~--~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~ 290 (676)
|-.|.|.+.+|.-+. +..+..-.++.. ...+-.-+|+++|.||||||-+.+++++-+-..++ +++..-. -.|.
T Consensus 344 ~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSS--aAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGIL--LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASS--AAGL 418 (764)
T ss_pred CccccchHHHHhhHH--HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccc--cccc
Confidence 566899999988664 222322222222 22222345999999999999999999987654433 3222110 1122
Q ss_pred hhHHHHH--HHH---HHh---hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC---C--------CC
Q 005815 291 GASRVRD--LFN---KAK---ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT---G--------NS 351 (676)
Q Consensus 291 ~~~~vr~--lF~---~A~---~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~---~--------~~ 351 (676)
++.-+++ .++ +|- .....|=.|||+|.+..+ .+ ..+++.|+.-. . +.
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~-----------dq---vAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK-----------DQ---VAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChH-----------hH---HHHHHHHHhheehheecceEEeecc
Confidence 1111111 000 010 112348899999999421 11 23444444211 0 12
Q ss_pred CeEEEEecCCcc-------------cccccccCCCccceE-EecCCCCHHHHHHHHHHHhcCCCC-Cccc------c---
Q 005815 352 GVIVIAATNRPE-------------ILDSALHRPGRFDRQ-VSVGLPDIRGREQILKVHSNNKKL-DKDV------S--- 407 (676)
Q Consensus 352 ~ViVIaaTN~~~-------------~Ld~aLlrpGRfd~~-I~v~~Pd~~~R~~IL~~~l~~~~l-~~d~------d--- 407 (676)
.--||||+|+.. .+++++++ |||.. |-++-|+...-..|-++.+..... ++.. .
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~ 562 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQ 562 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHH
Confidence 235788888642 27788888 99984 456777765555444433322110 0000 0
Q ss_pred --------------------------HHHH--------HHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 005815 408 --------------------------LSVI--------ATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDR 453 (676)
Q Consensus 408 --------------------------l~~L--------a~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~ 453 (676)
+..| .+.+++.+.++|+.+++-+-.+|.-.-++.||.+|+++|++-
T Consensus 563 vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eL 642 (764)
T KOG0480|consen 563 VRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVEL 642 (764)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHH
Confidence 0000 011235667778777777777777666777777777777654
Q ss_pred H
Q 005815 454 I 454 (676)
Q Consensus 454 v 454 (676)
+
T Consensus 643 l 643 (764)
T KOG0480|consen 643 L 643 (764)
T ss_pred H
Confidence 3
No 257
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.03 E-value=8.5e-05 Score=77.93 Aligned_cols=173 Identities=19% Similarity=0.298 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh--cCCC---EEEEech------hHHHHH---hh
Q 005815 224 QDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AGVP---FFSLSGS------EFIEMF---VG 289 (676)
Q Consensus 224 ~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e--~~~p---~i~is~s------~~~~~~---~g 289 (676)
.+++++.+.|.... ...+-|.|+|++|+|||+||+.+++. .... ++.++.+ ++.... .+
T Consensus 3 ~~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 3 KEIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 35566666655422 22345999999999999999999987 3222 1222221 122111 11
Q ss_pred h---------hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 290 V---------GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 290 ~---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
. ........+.......+++|++|+++... .+..+...+... ..+..||.||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR 137 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTR 137 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEES
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccc----------------cccccccccccc--ccccccccccc
Confidence 1 11223344444445569999999987662 222232222211 12345666666
Q ss_pred CcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC----CCccccHHHHHHhCCCCcHHHHHHH
Q 005815 361 RPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK----LDKDVSLSVIATRTPGFSGADLANL 426 (676)
Q Consensus 361 ~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~----l~~d~dl~~La~~t~G~sgadL~~l 426 (676)
...... ... .-+..+.++..+.++-.+++........ ...+.....+++.+.|. +-.|.-+
T Consensus 138 ~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 138 DRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp CGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccc-ccc---ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 543321 111 1156899999999999999998876544 11122367899999875 4444444
No 258
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.96 E-value=0.00016 Score=82.30 Aligned_cols=153 Identities=27% Similarity=0.351 Sum_probs=81.4
Q ss_pred ccccchhhHHHHHHHHHHh-cChhHHhhhC-CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEec--hhHHHHHhhh
Q 005815 215 DVAGVDEAKQDFQEIVQFL-QTPEKFAAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG--SEFIEMFVGV 290 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l-~~~~~~~~~g-~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~--s~~~~~~~g~ 290 (676)
.|.|+|++|+-+. +..+ ...+.+...| .+-.-+|||+|-||||||.+.+.+++.+..-.+ .|+ +.- +|.
T Consensus 430 sIye~edvKkglL--LqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSa----vGL 502 (804)
T KOG0478|consen 430 SIYELEDVKKGLL--LQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSA----VGL 502 (804)
T ss_pred hhhcccchhhhHH--HHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccch----hcc
Confidence 3677777777553 1212 1122233322 222235999999999999999999987643222 222 111 111
Q ss_pred hhHH-----HHHHHHHH---hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHh------ccCC--CCCCeE
Q 005815 291 GASR-----VRDLFNKA---KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DGFT--GNSGVI 354 (676)
Q Consensus 291 ~~~~-----vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~l------d~~~--~~~~Vi 354 (676)
.+-- -+++.-+. -.....|=.|||+|.+. +..+.++.+.+++- .|+- -+...-
T Consensus 503 TayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~-----------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 503 TAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS-----------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred eeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh-----------HHHHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 1100 01111110 01223478899999993 12233444333321 1111 123456
Q ss_pred EEEecCCccc-------------ccccccCCCccceEE-ecCCCCHH
Q 005815 355 VIAATNRPEI-------------LDSALHRPGRFDRQV-SVGLPDIR 387 (676)
Q Consensus 355 VIaaTN~~~~-------------Ld~aLlrpGRfd~~I-~v~~Pd~~ 387 (676)
|+|++|.... |+|.|++ |||.++ -++.||..
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 8999995322 7899999 999865 45677776
No 259
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.96 E-value=6.2e-05 Score=73.80 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=59.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHh------hh-----------------------hhH----
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFV------GV-----------------------GAS---- 293 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~------g~-----------------------~~~---- 293 (676)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |. +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887654 77888877542221110 10 000
Q ss_pred -HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 294 -RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 294 -~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
....+...+....|.+|+||++..+... ........+..++..+.. .++.+|.+++..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 0133344445678999999999988531 112223344455555432 245555555543
No 260
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=5.6e-05 Score=79.81 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=81.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH--------H-hh----hhhHHHHHHHHHHhh----CC
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM--------F-VG----VGASRVRDLFNKAKA----NS 306 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~--------~-~g----~~~~~vr~lF~~A~~----~~ 306 (676)
.+.|.++||+||+|+||+.+|.++|..+-+.--.-+|..+... . .+ -+.+.+|++.+.+.. ..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 3567889999999999999999999977432000011000000 0 00 123455666555432 22
Q ss_pred CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCC
Q 005815 307 PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLP 384 (676)
Q Consensus 307 P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~P 384 (676)
-.|++||++|.+. .+..|.||..++.. ..++++|..|+.++.+.|.+++ |+ ..+.|+++
T Consensus 96 ~kv~ii~~ad~mt--------------~~AaNaLLK~LEEP--p~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMT--------------LDAISAFLKVLEDP--PQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhcC--CCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 3699999999994 44678899999864 4567888888888999989888 77 56677654
No 261
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.95 E-value=1.5e-05 Score=94.94 Aligned_cols=209 Identities=16% Similarity=0.205 Sum_probs=131.2
Q ss_pred ccccccCCCCCcccccccchhhHHHHHHHHHHhcChhH-----HhhhCCCCC-C-eEEEEcCCCChHHHHHHHHHHhcCC
Q 005815 201 AKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEK-----FAAVGAKIP-K-GVLLVGPPGTGKTLLAKAIAGEAGV 273 (676)
Q Consensus 201 ~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~-----~~~~g~~~p-~-gvLL~GPpGTGKT~LArAlA~e~~~ 273 (676)
...|.+++.+.+..++.|....-. .+..++.+++. |...+.... . .++++||||.|||+.+.++|.+.|.
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~---~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~ 383 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSK---KASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF 383 (871)
T ss_pred ccccccccccccHHhhhcccchhh---hhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc
Confidence 356788888888899988877655 33344443322 211111111 1 2699999999999999999999999
Q ss_pred CEEEEechhHHHHHhhh-------hhHHHHHHHH---HH--hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHH
Q 005815 274 PFFSLSGSEFIEMFVGV-------GASRVRDLFN---KA--KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLL 341 (676)
Q Consensus 274 p~i~is~s~~~~~~~g~-------~~~~vr~lF~---~A--~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL 341 (676)
.++..+.++........ +...+...|. .. ....--||++||+|.+.. .+...-..+.+++
T Consensus 384 ~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~ 455 (871)
T KOG1968|consen 384 KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLC 455 (871)
T ss_pred ceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHH
Confidence 99999988765432211 1122333331 00 011123999999999963 1222233344444
Q ss_pred HHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 005815 342 TEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSG 420 (676)
Q Consensus 342 ~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sg 420 (676)
. ...+-+|+++|..+......+. |-+.-+.|+.|+...+..-+...+....+. .+..++.+...+ +
T Consensus 456 ~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~ 522 (871)
T KOG1968|consen 456 K-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----G 522 (871)
T ss_pred H-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----c
Confidence 4 2334688888876665543443 555788999999999888777776654432 333477777765 5
Q ss_pred HHHHHHHHHHHHH
Q 005815 421 ADLANLMNEAAIL 433 (676)
Q Consensus 421 adL~~lv~~A~~~ 433 (676)
+||++.++.-...
T Consensus 523 ~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 523 GDIRQIIMQLQFW 535 (871)
T ss_pred cCHHHHHHHHhhh
Confidence 6888887776655
No 262
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.91 E-value=9.9e-06 Score=87.62 Aligned_cols=184 Identities=25% Similarity=0.299 Sum_probs=100.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhH----------HH-HHHHHHHhhCCCeEEEEcCCcc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGAS----------RV-RDLFNKAKANSPCLVFIDEIDA 317 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~----------~v-r~lF~~A~~~~P~ILfIDEID~ 317 (676)
++||.|.||||||.|.+.++.-+... +++++..... .|.++. .+ ...+-.| ...|.+|||+|.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~--~gLta~~~~d~~~~~~~leaGalvla---d~GiccIDe~dk 132 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSA--AGLTASVSRDPVTGEWVLEAGALVLA---DGGICCIDEFDK 132 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTC--CCCCEEECCCGGTSSECEEE-HHHHC---TTSEEEECTTTT
T ss_pred ceeeccchhhhHHHHHHHHHhhCCce-EEECCCCccc--CCccceeccccccceeEEeCCchhcc---cCceeeeccccc
Confidence 59999999999999999887654332 3333322100 000000 00 0123233 235999999999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHhccC----CC-------CCCeEEEEecCCcc-------------cccccccCCC
Q 005815 318 VGRQRGTGIGGGNDEREQTLNQLLTEMDGF----TG-------NSGVIVIAATNRPE-------------ILDSALHRPG 373 (676)
Q Consensus 318 l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~----~~-------~~~ViVIaaTN~~~-------------~Ld~aLlrpG 373 (676)
+-. . ....|++.|+.- .. +...-|+|++|... .+++.|++
T Consensus 133 ~~~-----------~---~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS-- 196 (331)
T PF00493_consen 133 MKE-----------D---DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS-- 196 (331)
T ss_dssp --C-----------H---HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--
T ss_pred ccc-----------h---HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--
Confidence 831 1 234455555531 11 23468999999765 37788888
Q ss_pred ccceEEec-CCCCHHHHHHHHHHHhcCCC----------------CCccc--cHHHHHHh--------------------
Q 005815 374 RFDRQVSV-GLPDIRGREQILKVHSNNKK----------------LDKDV--SLSVIATR-------------------- 414 (676)
Q Consensus 374 Rfd~~I~v-~~Pd~~~R~~IL~~~l~~~~----------------l~~d~--dl~~La~~-------------------- 414 (676)
|||..+.+ +.|+.+.-..+.++.++... ++.+. .+-..++.
T Consensus 197 RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~ 276 (331)
T PF00493_consen 197 RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVE 276 (331)
T ss_dssp C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCC
T ss_pred hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHH
Confidence 99998765 56775555455444333211 11000 01111220
Q ss_pred ----------CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 415 ----------TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 415 ----------t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
....+.+.|+.+++-|...|.-+-+..|+.+|+..|+.=+
T Consensus 277 lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 277 LRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp CCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred hcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 1134567788999999999998999999999999998643
No 263
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.88 E-value=7.2e-05 Score=84.10 Aligned_cols=78 Identities=26% Similarity=0.369 Sum_probs=55.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHh------hh--------hhHHHHHHHHHHhhCC
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFV------GV--------GASRVRDLFNKAKANS 306 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~------g~--------~~~~vr~lF~~A~~~~ 306 (676)
.....-++|+||||+|||+|+..+|... +.++++++..+..+... +. ....+..+++......
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 3333448999999999999999998765 67888988766444321 11 1123456666667778
Q ss_pred CeEEEEcCCcccccc
Q 005815 307 PCLVFIDEIDAVGRQ 321 (676)
Q Consensus 307 P~ILfIDEID~l~~~ 321 (676)
|.+|+||++..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 999999999998643
No 264
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.86 E-value=7.1e-05 Score=82.10 Aligned_cols=74 Identities=30% Similarity=0.443 Sum_probs=52.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHh------hh--------hhHHHHHHHHHHhhCCCeE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFV------GV--------GASRVRDLFNKAKANSPCL 309 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~------g~--------~~~~vr~lF~~A~~~~P~I 309 (676)
..-++|+|+||+|||+|+..+|... +.++++++..+-.+... +. ....+..+++......|.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~l 161 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDL 161 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcE
Confidence 3448999999999999999998765 46788887754332211 11 1123455666667788999
Q ss_pred EEEcCCccccc
Q 005815 310 VFIDEIDAVGR 320 (676)
Q Consensus 310 LfIDEID~l~~ 320 (676)
|+||+|..+..
T Consensus 162 VVIDSIq~l~~ 172 (372)
T cd01121 162 VIIDSIQTVYS 172 (372)
T ss_pred EEEcchHHhhc
Confidence 99999999864
No 265
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.81 E-value=3.2e-05 Score=74.91 Aligned_cols=103 Identities=22% Similarity=0.233 Sum_probs=63.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechh--------HHHHHhh-----hhhHHHHHHHHHHhhCCCeEEEEc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGSE--------FIEMFVG-----VGASRVRDLFNKAKANSPCLVFID 313 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s~--------~~~~~~g-----~~~~~vr~lF~~A~~~~P~ILfID 313 (676)
.+.|.||+|+|||+|.+.+++.... --+.+++.+ .....++ .+..+.+-.+..|....|.+|++|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlD 107 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILD 107 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4889999999999999999987521 112222211 1111111 123345667777888899999999
Q ss_pred CCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 314 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 314 EID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
|...-. +....+.+.+++.++. .+ +..+|.+|+.++.+
T Consensus 108 EP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 108 EPTAAL----------TPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDEV 145 (163)
T ss_pred CCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 975543 4445556666666652 22 34566677776543
No 266
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.81 E-value=0.00011 Score=74.74 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH----HHHHhhh-------------------hhHHHHH
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF----IEMFVGV-------------------GASRVRD 297 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~----~~~~~g~-------------------~~~~vr~ 297 (676)
.....-++++||||+|||+++..+|.+. +.++++++...+ ....... ....+..
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 3333348999999999999999998754 778888887622 1111110 0011122
Q ss_pred HHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 298 LFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 298 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
+..... ..+++|+||.+.++....... ........+.+.+++..+..+....++.||.+...
T Consensus 100 ~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~ 161 (225)
T PRK09361 100 AEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQV 161 (225)
T ss_pred HHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccc
Confidence 221122 578999999999986432110 01122233444554444444434456666665443
No 267
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.79 E-value=4.8e-05 Score=83.72 Aligned_cols=222 Identities=20% Similarity=0.290 Sum_probs=125.5
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHhhhCCCCC--CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe-chhHHHHHhhhh
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIP--KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS-GSEFIEMFVGVG 291 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p--~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is-~s~~~~~~~g~~ 291 (676)
+|.|.+++|+.|.-++-- .+.+-..-|.++. -+|+|.|.||+-||-|.+.+.+-+-...+..- +|. -+|.+
T Consensus 343 EIyGheDVKKaLLLlLVG--gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG--GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhC--CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 588999999988654432 2222222233433 35999999999999999999987654444331 221 13333
Q ss_pred hHHHHHHHHH-------H-hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHH----h--ccCCC--CCCeEE
Q 005815 292 ASRVRDLFNK-------A-KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE----M--DGFTG--NSGVIV 355 (676)
Q Consensus 292 ~~~vr~lF~~-------A-~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~----l--d~~~~--~~~ViV 355 (676)
+.-+++-... | -.....|-.|||+|.+.... .-.+.+..++ + .|+.. +...-|
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D-----------RtAIHEVMEQQTISIaKAGI~TtLNAR~sI 485 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD-----------RTAIHEVMEQQTISIAKAGINTTLNARTSI 485 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh-----------hHHHHHHHHhhhhhhhhhccccchhhhHHh
Confidence 3333221100 0 00123488899999995221 1122222221 1 11111 234578
Q ss_pred EEecCCcc-------------cccccccCCCccceEEec-CCCCHHHHHHHHHHH----hcCCCCC---ccccHHH----
Q 005815 356 IAATNRPE-------------ILDSALHRPGRFDRQVSV-GLPDIRGREQILKVH----SNNKKLD---KDVSLSV---- 410 (676)
Q Consensus 356 IaaTN~~~-------------~Ld~aLlrpGRfd~~I~v-~~Pd~~~R~~IL~~~----l~~~~l~---~d~dl~~---- 410 (676)
+||.|... .|+.||++ |||...-+ +.||.+.-..+.++. ..+.... ..++...
T Consensus 486 LaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~y 563 (721)
T KOG0482|consen 486 LAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRY 563 (721)
T ss_pred hhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHH
Confidence 88888532 28899999 99985444 577765554444332 2111111 1111110
Q ss_pred --HHHh----------------------------C-CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 411 --IATR----------------------------T-PGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 411 --La~~----------------------------t-~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
+++. . .-.|++-|-.+++-+...|..|-...|..+|+.+|+.-+.
T Consensus 564 I~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 564 ISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 0111 0 1236778888888888888888888999999999987553
No 268
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.79 E-value=0.00015 Score=71.47 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=69.5
Q ss_pred hhCCCCCCe--EEEEcCCCChHHHHHHHHHHhcCC-------------CEEEEechhHHHHHh-h-----------hhhH
Q 005815 241 AVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEAGV-------------PFFSLSGSEFIEMFV-G-----------VGAS 293 (676)
Q Consensus 241 ~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~~~-------------p~i~is~s~~~~~~~-g-----------~~~~ 293 (676)
......++| +.|.||+|+|||||.+++....|. ++.++...++.+.+- + .+..
T Consensus 13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHH
Confidence 334455555 889999999999999999743321 122222222222211 0 0123
Q ss_pred HHHHHHHHHhhCC--CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccC
Q 005815 294 RVRDLFNKAKANS--PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHR 371 (676)
Q Consensus 294 ~vr~lF~~A~~~~--P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlr 371 (676)
+.+-.+..|.... |.++++||...-. +....+.+.+++..+. . .+..||.+|+.++.+ +
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~L----------D~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~ 153 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGL----------HQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S 153 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H
Confidence 4455666777788 9999999985543 3344445555555442 2 244677777776543 2
Q ss_pred CCccceEEecC
Q 005815 372 PGRFDRQVSVG 382 (676)
Q Consensus 372 pGRfd~~I~v~ 382 (676)
.+|+.+.+.
T Consensus 154 --~~d~i~~l~ 162 (176)
T cd03238 154 --SADWIIDFG 162 (176)
T ss_pred --hCCEEEEEC
Confidence 356666664
No 269
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00056 Score=72.49 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCC-------EEEE-ec--------hhHHHHH-hh--hhhHHHHHHHHHHhh-
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSL-SG--------SEFIEMF-VG--VGASRVRDLFNKAKA- 304 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------~i~i-s~--------s~~~~~~-~g--~~~~~vr~lF~~A~~- 304 (676)
+.+.++||+|| +||+++|+++|..+-+. .-.+ +| .|+..-. .| -..+.+|++...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56788999996 68999999999866321 1000 11 1110000 01 123567776655433
Q ss_pred ---CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEec
Q 005815 305 ---NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSV 381 (676)
Q Consensus 305 ---~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v 381 (676)
....|++||++|.+. ....|.||..++... .++++|..|+.++.+-|.+++ |+ ..+.|
T Consensus 100 p~~~~~kV~II~~ad~m~--------------~~AaNaLLKtLEEPp--~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH--------------VNAANSLLKVIEEPQ--SEIYIFLLTNDENKVLPTIKS--RT-QIFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcC--------------HHHHHHHHHHhcCCC--CCeEEEEEECChhhCchHHHH--cc-eeeeC
Confidence 233699999999994 456799999998643 456888888888888889988 87 68888
Q ss_pred CCCCHHHHHHHHH
Q 005815 382 GLPDIRGREQILK 394 (676)
Q Consensus 382 ~~Pd~~~R~~IL~ 394 (676)
+. +.+.-.+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 65 5454445554
No 270
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00044 Score=71.76 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCC-----EEEE-echhHHHH------Hh-----hhhhHHHHHHHHHHhh----
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSL-SGSEFIEM------FV-----GVGASRVRDLFNKAKA---- 304 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p-----~i~i-s~s~~~~~------~~-----g~~~~~vr~lF~~A~~---- 304 (676)
.|.++||+||+|+||..+|.++|..+-+. .-.+ +|..+... ++ .-+.+.+|++.+....
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 46789999999999999999999876221 0000 11111100 00 1123445555544321
Q ss_pred -CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCC
Q 005815 305 -NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGL 383 (676)
Q Consensus 305 -~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~ 383 (676)
....|++||++|.+. ....|.||..+++- ..++++|..|+.++.+.|.+++ |+ ..+.++.
T Consensus 86 ~~~~KV~II~~ae~m~--------------~~AaNaLLK~LEEP--p~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~~ 146 (261)
T PRK05818 86 SNGKKIYIIYGIEKLN--------------KQSANSLLKLIEEP--PKNTYGIFTTRNENNILNTILS--RC-VQYVVLS 146 (261)
T ss_pred cCCCEEEEeccHhhhC--------------HHHHHHHHHhhcCC--CCCeEEEEEECChHhCchHhhh--he-eeeecCC
Confidence 234699999999994 45789999999863 4567888888889999999998 87 4566665
Q ss_pred C
Q 005815 384 P 384 (676)
Q Consensus 384 P 384 (676)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 5
No 271
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.00012 Score=74.84 Aligned_cols=32 Identities=38% Similarity=0.693 Sum_probs=26.1
Q ss_pred hhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 240 AAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 240 ~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++....+.+| +-|.||+|||||||.+.+|+-.
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445566666 8999999999999999999854
No 272
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.74 E-value=0.00015 Score=72.72 Aligned_cols=106 Identities=25% Similarity=0.398 Sum_probs=61.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc-----CCCE-------------EEEechhHHHH---HhhhhhHHHHHHHHHHhhCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPF-------------FSLSGSEFIEM---FVGVGASRVRDLFNKAKANS 306 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~-----~~p~-------------i~is~s~~~~~---~~g~~~~~vr~lF~~A~~~~ 306 (676)
+-++|.||+|+|||+|+|.++... |.++ ..++..+-... .......++..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 458999999999999999998633 4432 11111111100 01112245677777766568
Q ss_pred CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 307 PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 307 P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
|.+|++||.-.-. ...........++..+.. .+..+|.+|+.++.+.
T Consensus 106 p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~~ 152 (199)
T cd03283 106 PVLFLLDEIFKGT---------NSRERQAASAAVLKFLKN----KNTIGIISTHDLELAD 152 (199)
T ss_pred CeEEEEecccCCC---------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHHH
Confidence 9999999974321 112223344455665531 2457788888776543
No 273
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.74 E-value=0.00021 Score=76.69 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=68.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH----hhh------------hhHHHHHHHHHHhh
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF----VGV------------GASRVRDLFNKAKA 304 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~----~g~------------~~~~vr~lF~~A~~ 304 (676)
.+..+-++|+||||||||+|+..++.++ +.++++++..+..+.. .|. .++.+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3333448999999999999988876654 6778888765433210 111 11122222233455
Q ss_pred CCCeEEEEcCCccccccCCC-C-CCCC-ChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 305 NSPCLVFIDEIDAVGRQRGT-G-IGGG-NDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 305 ~~P~ILfIDEID~l~~~r~~-~-~~~~-~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
..+++|+||-+.++.++..- + .+.. .....+.+.+++..+.......++.+|.+..
T Consensus 132 ~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred cCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 77899999999999754211 0 0111 1122234556666666555566777777644
No 274
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.74 E-value=0.00011 Score=77.12 Aligned_cols=113 Identities=25% Similarity=0.410 Sum_probs=68.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC----------CCEEEEe-chhHHHHHhh-------------hhhHHHHHHHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSLS-GSEFIEMFVG-------------VGASRVRDLFNKAK 303 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~----------~p~i~is-~s~~~~~~~g-------------~~~~~vr~lF~~A~ 303 (676)
++++|.||||+|||+|.+++++... .++..++ ..++...+.+ ....+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5799999999999999999999863 2232222 1233221111 11222345666777
Q ss_pred hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccccc--------ccCCCcc
Q 005815 304 ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSA--------LHRPGRF 375 (676)
Q Consensus 304 ~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~a--------LlrpGRf 375 (676)
.+.|.+|++||+.. ...+..++..+. .+..+|++++.++. ... |+..+-|
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCce
Confidence 78999999999621 123444555542 35678888886443 222 2334567
Q ss_pred ceEEecC
Q 005815 376 DRQVSVG 382 (676)
Q Consensus 376 d~~I~v~ 382 (676)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 7766663
No 275
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.71 E-value=8.7e-05 Score=79.20 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=89.4
Q ss_pred cchhhHHHHHHHHHHhcChhHH----hhhC---CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCE-EEEechhHHHH---
Q 005815 218 GVDEAKQDFQEIVQFLQTPEKF----AAVG---AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-FSLSGSEFIEM--- 286 (676)
Q Consensus 218 G~~~~k~~L~elv~~l~~~~~~----~~~g---~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~-i~is~s~~~~~--- 286 (676)
-+..+.+.|.++.+.+..+..- ..+. ..+++|++|||+-|.|||+|.-.+...+..+- ..+.-..|...
T Consensus 29 aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~ 108 (367)
T COG1485 29 AQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQ 108 (367)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHH
Confidence 3455666677776654333211 1122 34779999999999999999999988764322 22222233221
Q ss_pred ----HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC-
Q 005815 287 ----FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR- 361 (676)
Q Consensus 287 ----~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~- 361 (676)
..|.. .-+..+-.. ....-.+|++||+..- +-...-++..|+.++- ..||++++|+|.
T Consensus 109 ~l~~l~g~~-dpl~~iA~~-~~~~~~vLCfDEF~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 109 RLHTLQGQT-DPLPPIADE-LAAETRVLCFDEFEVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHHcCCC-CccHHHHHH-HHhcCCEEEeeeeeec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 11111 001111111 1112249999997542 2223446777777763 358999999995
Q ss_pred cccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccH
Q 005815 362 PEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSL 408 (676)
Q Consensus 362 ~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl 408 (676)
|+.|-+ +++.+.-.+ |- .++++.++.-..++...|.
T Consensus 172 P~~LY~-----dGlqR~~FL--P~----I~li~~~~~v~~vD~~~DY 207 (367)
T COG1485 172 PDNLYK-----DGLQRERFL--PA----IDLIKSHFEVVNVDGPVDY 207 (367)
T ss_pred hHHhcc-----cchhHHhhH--HH----HHHHHHheEEEEecCCccc
Confidence 344332 233332222 22 4577777776666665554
No 276
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00045 Score=73.60 Aligned_cols=125 Identities=16% Similarity=0.149 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCC-----------C--EEEEe--chhHHHHHhhhhhHHHHHHHHHHhh-----
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------P--FFSLS--GSEFIEMFVGVGASRVRDLFNKAKA----- 304 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~-----------p--~i~is--~s~~~~~~~g~~~~~vr~lF~~A~~----- 304 (676)
+.+...||+|+.|.||+.++++++..+-+ | ++.++ +.. ...+.++++.+....
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCccc
Confidence 45667999999999999999999988622 2 22232 111 122345665555422
Q ss_pred CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCC
Q 005815 305 NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLP 384 (676)
Q Consensus 305 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~P 384 (676)
....|++||++|.+. ....|.||..++... ..+++|..|+.++.+-|.+++ |+ ..+++.+|
T Consensus 89 ~~~KvvII~~~e~m~--------------~~a~NaLLK~LEEPp--~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l 149 (299)
T PRK07132 89 SQKKILIIKNIEKTS--------------NSLLNALLKTIEEPP--KDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEP 149 (299)
T ss_pred CCceEEEEecccccC--------------HHHHHHHHHHhhCCC--CCeEEEEEeCChHhChHHHHh--Ce-EEEECCCC
Confidence 245799999998883 346788999988644 445666666677888888887 76 68999999
Q ss_pred CHHHHHHHHHH
Q 005815 385 DIRGREQILKV 395 (676)
Q Consensus 385 d~~~R~~IL~~ 395 (676)
+.++..+.|..
T Consensus 150 ~~~~l~~~l~~ 160 (299)
T PRK07132 150 DQQKILAKLLS 160 (299)
T ss_pred CHHHHHHHHHH
Confidence 88877766654
No 277
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.68 E-value=8.8e-05 Score=75.47 Aligned_cols=72 Identities=25% Similarity=0.277 Sum_probs=40.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH----------HHHhhhhhHHHHHHHHHHh--hCCCeEEEEcC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI----------EMFVGVGASRVRDLFNKAK--ANSPCLVFIDE 314 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~----------~~~~g~~~~~vr~lF~~A~--~~~P~ILfIDE 314 (676)
|.-+||||+||+|||++|+.+++. ..++..+.+.-. ..-.....+.+.+.+..+. .....+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 556999999999999999999743 222222221100 0000001122333333332 24457999999
Q ss_pred Cccccc
Q 005815 315 IDAVGR 320 (676)
Q Consensus 315 ID~l~~ 320 (676)
|+.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 999854
No 278
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.67 E-value=9.1e-05 Score=76.80 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc
Q 005815 291 GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363 (676)
Q Consensus 291 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~ 363 (676)
+.++.+-++..|....|.||++||--+.. +-..+--+.+++..+ ....+..+|++.++++
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~L----------Di~~Q~evl~ll~~l---~~~~~~tvv~vlHDlN 200 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHL----------DIAHQIEVLELLRDL---NREKGLTVVMVLHDLN 200 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCcccc----------CHHHHHHHHHHHHHH---HHhcCCEEEEEecCHH
Confidence 34556777888888999999999987664 222333344444444 4445677888888754
No 279
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.66 E-value=0.00014 Score=65.54 Aligned_cols=22 Identities=45% Similarity=0.865 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
|.|+||||+|||++++.+|..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998876
No 280
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.66 E-value=0.00034 Score=71.81 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=44.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHH----HHHh--hh-------------------------hhH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFI----EMFV--GV-------------------------GAS 293 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~----~~~~--g~-------------------------~~~ 293 (676)
.-+++.||||||||+++..++... |.+.++++..+-. .... |. ...
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRK 104 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHHH
Confidence 349999999999999976554433 6677777654221 1110 00 012
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCcccc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVG 319 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~ 319 (676)
.+..+........|.+++|||+-.+.
T Consensus 105 ~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 105 FLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHhcCCCEEEEECccHHh
Confidence 23344444555678999999998874
No 281
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.66 E-value=0.00037 Score=70.52 Aligned_cols=114 Identities=21% Similarity=0.197 Sum_probs=62.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH----HHHHhhh-------------------hhHHHHHHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF----IEMFVGV-------------------GASRVRDLFN 300 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~----~~~~~g~-------------------~~~~vr~lF~ 300 (676)
..-++++|+||+|||+++..+|.+. +.++++++.... .....+. ....+..+..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETET 98 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHHHHH
Confidence 3349999999999999999998765 567777765421 1111110 0111122222
Q ss_pred HHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 301 KAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 301 ~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
... ..+++|+||-+..+....... ..........+..++..+..+....++.||.+....
T Consensus 99 ~~~-~~~~lvvIDsi~~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~ 158 (218)
T cd01394 99 FAD-EKVDLVVVDSATALYRLELGD-DDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVY 158 (218)
T ss_pred HHh-cCCcEEEEechHHhhhHHhcC-ccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCE
Confidence 222 348899999999985321110 001112223344444444444445567777765543
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.00026 Score=72.52 Aligned_cols=39 Identities=28% Similarity=0.526 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS 281 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s 281 (676)
|.+....++++|+||+|||+|+..++.+. +.++++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 44444559999999999999999997653 6777777654
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00024 Score=68.08 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+--+.++|+||+|||+++.-+++.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3459999999999999999999876
No 284
>PHA00729 NTP-binding motif containing protein
Probab=97.63 E-value=0.00011 Score=74.97 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
.++|+|+||||||+||.+++.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999865
No 285
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=0.00015 Score=70.75 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=60.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhH--------HHH----------H---h----hhhhHHHHHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGSEF--------IEM----------F---V----GVGASRVRDLFNK 301 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s~~--------~~~----------~---~----g~~~~~vr~lF~~ 301 (676)
-+.|.||+|+|||+|.+.+++.... --+.+++... ... + + -.+..+.+-.+..
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~ 109 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIAR 109 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHHH
Confidence 3999999999999999999997521 0111221110 000 0 0 0112234445666
Q ss_pred HhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 302 AKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 302 A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
|....|.+|++||..+-. +......+.+++..+. . +..+|.+|+.++.+
T Consensus 110 al~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 110 ALLRDPPILILDEATSAL----------DPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 777899999999975543 3344555566666552 2 25677778876654
No 286
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.59 E-value=0.00028 Score=68.57 Aligned_cols=98 Identities=34% Similarity=0.525 Sum_probs=59.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC-----------CEEEEech------hHHHHHh------hhhhHHHHHHHHHHhhC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV-----------PFFSLSGS------EFIEMFV------GVGASRVRDLFNKAKAN 305 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~-----------p~i~is~s------~~~~~~~------g~~~~~vr~lF~~A~~~ 305 (676)
-+.|.||+|+|||+|++.+++.... .+.++... ...+... -.+..+.|-.+..|...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHc
Confidence 3899999999999999999997521 01111110 0111110 01223455667777788
Q ss_pred CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc
Q 005815 306 SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363 (676)
Q Consensus 306 ~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~ 363 (676)
.|.++++||..+-. +....+.+.+++..+ +..+|.+|++++
T Consensus 109 ~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 109 KPKFVFLDEATSAL----------DEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred CCCEEEEECCcccc----------CHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 99999999986653 344455555666554 135666777654
No 287
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.59 E-value=0.0014 Score=72.33 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=38.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCcccc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVG 319 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 319 (676)
.++++.||+|||||+++.+++... | -.++...+..... . ..+.. -....+|+|||+..+-
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCc
Confidence 469999999999999999988762 3 2233444332211 1 11111 2345799999998863
No 288
>PRK08118 topology modulation protein; Reviewed
Probab=97.59 E-value=0.00011 Score=71.58 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=30.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
.|+++||||+||||+|+.++..++.|++.++.--
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~ 36 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALF 36 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 4899999999999999999999999999887543
No 289
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.57 E-value=0.00045 Score=70.34 Aligned_cols=69 Identities=23% Similarity=0.384 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCC
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPG 373 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpG 373 (676)
+.|-.+.+|..+.|.||+-||.-.=. +.+....+-.++.++. ...+..||..|+.++. -.
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnL----------D~~t~~~V~~ll~~~~---~~~g~tii~VTHd~~l-----A~-- 207 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNL----------DSKTAKEVLELLRELN---KERGKTIIMVTHDPEL-----AK-- 207 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccC----------ChHHHHHHHHHHHHHH---HhcCCEEEEEcCCHHH-----HH--
Confidence 44556677777899999999964322 3344445555555552 3345678888887654 22
Q ss_pred ccceEEecC
Q 005815 374 RFDRQVSVG 382 (676)
Q Consensus 374 Rfd~~I~v~ 382 (676)
++|++|.+.
T Consensus 208 ~~dr~i~l~ 216 (226)
T COG1136 208 YADRVIELK 216 (226)
T ss_pred hCCEEEEEe
Confidence 677777663
No 290
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.55 E-value=0.0002 Score=84.44 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccccccc
Q 005815 291 GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALH 370 (676)
Q Consensus 291 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLl 370 (676)
+.++.|-.+.+|..+.|.||++||.-+-. +.+.++.+.+-|.++. .+..+|..|+++..+
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaL----------D~~sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti----- 671 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSAL----------DPETEAIILQNLLQIL-----QGRTVIIIAHRLSTI----- 671 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCccccc----------CHhHHHHHHHHHHHHh-----cCCeEEEEEccchHh-----
Confidence 34566777778888999999999985543 5556667776666653 223566677876543
Q ss_pred CCCccceEEecCC
Q 005815 371 RPGRFDRQVSVGL 383 (676)
Q Consensus 371 rpGRfd~~I~v~~ 383 (676)
+ ++|+.+.++.
T Consensus 672 ~--~adrIiVl~~ 682 (709)
T COG2274 672 R--SADRIIVLDQ 682 (709)
T ss_pred h--hccEEEEccC
Confidence 3 6777776643
No 291
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.55 E-value=0.00043 Score=78.05 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHh------hh--------hhHHHHHHHHHHhhCCCeE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFV------GV--------GASRVRDLFNKAKANSPCL 309 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~------g~--------~~~~vr~lF~~A~~~~P~I 309 (676)
..-++|.|+||+|||+|+..++... +.++++++..+-.+... +. .+..+..+.+.+....|.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~ 173 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQA 173 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcE
Confidence 3348999999999999999997755 46788888754433211 11 1122445555666778999
Q ss_pred EEEcCCccccc
Q 005815 310 VFIDEIDAVGR 320 (676)
Q Consensus 310 LfIDEID~l~~ 320 (676)
|+||.|..+..
T Consensus 174 vVIDSIq~l~~ 184 (454)
T TIGR00416 174 CVIDSIQTLYS 184 (454)
T ss_pred EEEecchhhcc
Confidence 99999999853
No 292
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.55 E-value=0.00037 Score=74.89 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=65.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH-H---hhh------------hhHHHHHHHHHHhhCCCe
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM-F---VGV------------GASRVRDLFNKAKANSPC 308 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~-~---~g~------------~~~~vr~lF~~A~~~~P~ 308 (676)
+-+.++||||+|||+|+-.++.++ +.++++++..+-.+. + .|. .++.+..+-...+...++
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 348899999999999999887554 677888876442211 1 011 111122222234557789
Q ss_pred EEEEcCCccccccCCC-CCCC-CC-hHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 309 LVFIDEIDAVGRQRGT-GIGG-GN-DEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 309 ILfIDEID~l~~~r~~-~~~~-~~-~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
+|+||-+-++.++..- +..+ .. ....+.+.+.+..+.......++.+|.+..
T Consensus 136 lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 136 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred EEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 9999999999753211 1011 11 112234455566555554556677777644
No 293
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.54 E-value=6.4e-05 Score=68.40 Aligned_cols=30 Identities=43% Similarity=0.907 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
|+|.||||+||||+|+.+|..+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998776554
No 294
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.53 E-value=0.00027 Score=68.97 Aligned_cols=109 Identities=28% Similarity=0.452 Sum_probs=64.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhcCC--CEEEEechh--------HHHH--Hh---------------hhhhH
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGSE--------FIEM--FV---------------GVGAS 293 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s~--------~~~~--~~---------------g~~~~ 293 (676)
....+.| +.|.||+|+|||+|++.+++.... --+.+++.+ +... |+ -.+..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence 3444444 899999999999999999986521 011121111 1000 00 01223
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+.|-.+..|....|.++++||.-.-. +......+.+++..+. . .+..+|.+|+..+.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~---~-~~~tii~~sh~~~~~ 159 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALK---A-AGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH
Confidence 45566777788899999999976543 4444555666666552 2 244677777766543
No 295
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.52 E-value=0.00017 Score=82.59 Aligned_cols=57 Identities=32% Similarity=0.444 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 293 SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 293 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
+..|-.|.+..-++|.++||||.-+-. +++.+..+.++++.. -.++.||..++++..
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsAL----------De~~e~~l~q~l~~~-----lp~~tvISV~Hr~tl 576 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSAL----------DEETEDRLYQLLKEE-----LPDATVISVGHRPTL 576 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhcc----------ChHHHHHHHHHHHhh-----CCCCEEEEeccchhh
Confidence 345667888888999999999986553 455566666666541 145678888887643
No 296
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.52 E-value=0.00033 Score=67.55 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
.+..|+|+|+||||||++|+++|..++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3567999999999999999999999999888543
No 297
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.51 E-value=0.00033 Score=68.71 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=64.6
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhHH------HH---H----------------hh--h
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGSEFI------EM---F----------------VG--V 290 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s~~~------~~---~----------------~g--~ 290 (676)
.....++| +.|.||+|+|||+|++.+++.... --+.+++.+.. .. | .. .
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 33444444 889999999999999999997521 11222221110 00 0 00 0
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 291 GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 291 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+..+.+-.+..|....|.++++||..+-. +......+.+++..+. . +..+|.+|+.++.+
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 160 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL---K--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 12344556677777899999999986543 3444556666666652 1 34566667766544
No 298
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.51 E-value=0.0027 Score=66.51 Aligned_cols=91 Identities=26% Similarity=0.289 Sum_probs=58.9
Q ss_pred cccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH--------
Q 005815 216 VAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-------- 286 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~-------- 286 (676)
+.|+.-+++.+-..+.. +.++. .+.|--+=|||++||||.+.++.||+.+-.. -..|.++..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~---Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRG---GLRSPFVHHFVATLHFP 154 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhc---cccchhHHHhhhhccCC
Confidence 78999999888777755 44432 2334456689999999999999999976210 111233332
Q ss_pred -------HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccc
Q 005815 287 -------FVGVGASRVRDLFNKAKANSPCLVFIDEIDAV 318 (676)
Q Consensus 287 -------~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 318 (676)
|-.+-...+++ .+...+.+|.++||+|.+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ChHHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhc
Confidence 22223333333 344566679999999999
No 299
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.50 E-value=0.00035 Score=69.97 Aligned_cols=66 Identities=23% Similarity=0.441 Sum_probs=42.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCC----EEEEec-hhHHH---------HHhhhhhHHHHHHHHHHhhCCCeEEEEcCC
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVP----FFSLSG-SEFIE---------MFVGVGASRVRDLFNKAKANSPCLVFIDEI 315 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p----~i~is~-s~~~~---------~~~g~~~~~vr~lF~~A~~~~P~ILfIDEI 315 (676)
+++.||+|+|||++++++++....+ ++.+.. .++.. .-++.....+.+.+..+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 8899999999999999998877421 222211 11110 001222233555666777788999999998
No 300
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.50 E-value=0.0007 Score=68.71 Aligned_cols=113 Identities=20% Similarity=0.219 Sum_probs=59.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH-----hcCCCEEE--------------EechhHHHHHhhhhhHHHHHH-HHHHhhCC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAG-----EAGVPFFS--------------LSGSEFIEMFVGVGASRVRDL-FNKAKANS 306 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~-----e~~~p~i~--------------is~s~~~~~~~g~~~~~vr~l-F~~A~~~~ 306 (676)
++.++|+||+|+|||++.|.++. ..|.++.. +...+-...........++.+ +..+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 35699999999999999999983 23432211 111111111111111122222 12233467
Q ss_pred CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccc
Q 005815 307 PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSAL 369 (676)
Q Consensus 307 P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aL 369 (676)
|++++|||+..-. ...+....+..++..+-. ....+..+|.+|+..+.+....
T Consensus 109 ~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 8999999985532 112233444455555421 1112346788888877655443
No 301
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00041 Score=71.74 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 292 ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 292 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
.+..|-++++|....|.++++||.-.- -+...+..+..||.++. .. +..|+..|+....+
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~g----------vD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~v 202 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTG----------VDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCccc----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHHh
Confidence 345567788888899999999996332 35556777788888774 33 67888888876553
No 302
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.47 E-value=0.00041 Score=75.83 Aligned_cols=109 Identities=24% Similarity=0.345 Sum_probs=58.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC-----CCEEEEechh-------HHHHHhh---------hhhHHHH---HHHHHHh--
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAG-----VPFFSLSGSE-------FIEMFVG---------VGASRVR---DLFNKAK-- 303 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~-----~p~i~is~s~-------~~~~~~g---------~~~~~vr---~lF~~A~-- 303 (676)
.+|+||||+|||+|++.|++... +.++.+-..+ +.....| ....+++ ..++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998763 2222222222 2221111 1112222 3333333
Q ss_pred --hCCCeEEEEcCCccccccCCC--------CCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEe
Q 005815 304 --ANSPCLVFIDEIDAVGRQRGT--------GIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAA 358 (676)
Q Consensus 304 --~~~P~ILfIDEID~l~~~r~~--------~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 358 (676)
.....+||||||+.+.+.... ..++-+...-.....|+..-......+.+.+|+|
T Consensus 252 ~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T 316 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIAT 316 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEE
Confidence 245689999999998753211 1122222233344455554433333445666665
No 303
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.46 E-value=0.00014 Score=73.84 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=29.4
Q ss_pred ChhHHhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 235 TPEKFAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 235 ~~~~~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+...+.++..++++| +-+.||+|||||+|.|.+.+..
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 334455566777877 7789999999999999999855
No 304
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.45 E-value=0.0012 Score=73.29 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=75.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGG 328 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 328 (676)
-++|+||.++|||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 699999999999999988888775556666665544332211 111222222222245799999998882
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHH
Q 005815 329 GNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQ 391 (676)
Q Consensus 329 ~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~ 391 (676)
.....+..+..... . .+++.+++...-....+-.-+||. ..+.+.+-+..+...
T Consensus 108 ---~W~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 ---DWERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---hHHHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 35666666665321 1 344444444333333344447895 677787888888765
No 305
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.45 E-value=0.00058 Score=67.34 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=59.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechh---HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGSE---FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRG 323 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s~---~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~ 323 (676)
-+.|.||+|+|||||++.+++.... --+.+++.. ......-.+..+.+-.+..+....|.++++||...-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L---- 102 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL---- 102 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC----
Confidence 4889999999999999999986521 111121110 0000001122345556677777899999999985543
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 324 TGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 324 ~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+....+.+..++.++. ...+..+|.+|+..+.+
T Consensus 103 ------D~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 103 ------DIEQRLNAARAIRRLS---EEGKKTALVVEHDLAVL 135 (177)
T ss_pred ------CHHHHHHHHHHHHHHH---HcCCCEEEEEECCHHHH
Confidence 3344444444554432 22224566677765543
No 306
>PRK13949 shikimate kinase; Provisional
Probab=97.45 E-value=0.00078 Score=65.82 Aligned_cols=31 Identities=48% Similarity=0.745 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
.|+|+||||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999988876
No 307
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.45 E-value=0.001 Score=69.17 Aligned_cols=111 Identities=20% Similarity=0.309 Sum_probs=59.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCC------EEEEec------hhHHHHH--------hhhh-hHHH---HHHHHHHh-
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVP------FFSLSG------SEFIEMF--------VGVG-ASRV---RDLFNKAK- 303 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p------~i~is~------s~~~~~~--------~g~~-~~~v---r~lF~~A~- 303 (676)
-++|.||+|+|||+|++.+++..... ++.+.. .+|.... .+.. ..++ +.....|.
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999877432 333222 2333332 1111 1111 12222222
Q ss_pred ---hCCCeEEEEcCCccccccC-------CCCCC-CCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 304 ---ANSPCLVFIDEIDAVGRQR-------GTGIG-GGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 304 ---~~~P~ILfIDEID~l~~~r-------~~~~~-~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
.....+|||||+..+.... +...+ +.....-..+.+++..-..+..++.+.++.|.
T Consensus 98 ~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 98 LVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 3567899999999885432 11111 22222333445666543333345567667443
No 308
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0004 Score=75.97 Aligned_cols=108 Identities=20% Similarity=0.372 Sum_probs=60.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc----C-CCEEEEechhHH-------HH---Hhhh------hhHHHHHHHHHHhhC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSLSGSEFI-------EM---FVGV------GASRVRDLFNKAKAN 305 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~----~-~p~i~is~s~~~-------~~---~~g~------~~~~vr~lF~~A~~~ 305 (676)
...++|+||+|+|||+++..+|..+ | ..+..++...+. .. ..|. ....+...+.. ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~--l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE--LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--hc
Confidence 4459999999999999999999864 3 244444443331 11 1111 11122223332 23
Q ss_pred CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-CCCeEEEEecCCcccccccc
Q 005815 306 SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-NSGVIVIAATNRPEILDSAL 369 (676)
Q Consensus 306 ~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~~~~Ld~aL 369 (676)
...+|+||...... ....+.+.+..+..... ...++|+.+|+..+.++..+
T Consensus 215 ~~DlVLIDTaG~~~-------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 215 NKHMVLIDTIGMSQ-------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCCEEEEcCCCCCc-------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 45799999984331 11234445555544332 23477888888877766544
No 309
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00017 Score=72.38 Aligned_cols=32 Identities=31% Similarity=0.772 Sum_probs=25.3
Q ss_pred HHhhhCCCCCCe--EEEEcCCCChHHHHHHHHHH
Q 005815 238 KFAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAG 269 (676)
Q Consensus 238 ~~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~ 269 (676)
.++.....+.+| +.++||+|+|||||.|++..
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 344445556666 89999999999999999975
No 310
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.45 E-value=0.00066 Score=64.44 Aligned_cols=98 Identities=28% Similarity=0.364 Sum_probs=58.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEEech---hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGS---EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRG 323 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s---~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~ 323 (676)
.+.|.||+|+|||+|++++++.... --+.++.. .+... .. +..+.+-.+..|....|.++++||...-.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS-~G~~~rv~laral~~~p~illlDEP~~~L---- 101 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LS-GGEKMRLALAKLLLENPNLLLLDEPTNHL---- 101 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CC-HHHHHHHHHHHHHhcCCCEEEEeCCccCC----
Confidence 4889999999999999999997521 00111110 00000 11 12234455677777899999999986543
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 324 TGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 324 ~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+......+.+++.++ . ..+|.+|+.++.+
T Consensus 102 ------D~~~~~~l~~~l~~~---~----~til~~th~~~~~ 130 (144)
T cd03221 102 ------DLESIEALEEALKEY---P----GTVILVSHDRYFL 130 (144)
T ss_pred ------CHHHHHHHHHHHHHc---C----CEEEEEECCHHHH
Confidence 333444555555554 1 2566677776543
No 311
>PRK07261 topology modulation protein; Provisional
Probab=97.44 E-value=0.00019 Score=70.29 Aligned_cols=34 Identities=26% Similarity=0.571 Sum_probs=29.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
|+++|+||+||||||+.++...+.|++..+.-.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 8999999999999999999999999887765433
No 312
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.44 E-value=0.00017 Score=71.99 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=59.1
Q ss_pred EEEEcCCCChHHHHHHHH-HHh---cCCCEEEEechhHH-HHHhh---hhhH-------------HHHHHHHHHhhCCCe
Q 005815 250 VLLVGPPGTGKTLLAKAI-AGE---AGVPFFSLSGSEFI-EMFVG---VGAS-------------RVRDLFNKAKANSPC 308 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAl-A~e---~~~p~i~is~s~~~-~~~~g---~~~~-------------~vr~lF~~A~~~~P~ 308 (676)
.+++|.||+|||+.|-.. ... .|.+++. +...+. +.... .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988665 433 2666555 443221 11000 0000 001111111111457
Q ss_pred EEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCC
Q 005815 309 LVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLP 384 (676)
Q Consensus 309 ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~P 384 (676)
+|+|||++.+.+.+... .......+ +++.+. ...++-||.+|..+..+|+.+++ ..+.++.+..+
T Consensus 82 liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-----T----HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccc----cccchHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 99999999998776531 11122233 333332 34578899999999999998877 77777776554
No 313
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.43 E-value=0.0011 Score=70.22 Aligned_cols=160 Identities=19% Similarity=0.364 Sum_probs=93.2
Q ss_pred ccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHH---HhcCCCEEEEechhHH--HH--
Q 005815 215 DVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIA---GEAGVPFFSLSGSEFI--EM-- 286 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA---~e~~~p~i~is~s~~~--~~-- 286 (676)
.+.|..+..+.+.+++.. +...+ ...+++.||.|+|||.+....- .+.|-.|+.+....+. ++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456777777777777765 22221 3469999999999999866543 3567777766443222 11
Q ss_pred -----------------HhhhhhHHHHHHHHHHhh-----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHh
Q 005815 287 -----------------FVGVGASRVRDLFNKAKA-----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 344 (676)
Q Consensus 287 -----------------~~g~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~l 344 (676)
..|.....+..++...+. ..+.|.++||+|.+.+. .++-.+..++..-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHH
Confidence 011122223333333322 12334455799998632 1233444444332
Q ss_pred ccCCCCCCeEEEEecCCcccc---cccccCCCccceE-EecCCC-CHHHHHHHHHHHh
Q 005815 345 DGFTGNSGVIVIAATNRPEIL---DSALHRPGRFDRQ-VSVGLP-DIRGREQILKVHS 397 (676)
Q Consensus 345 d~~~~~~~ViVIaaTN~~~~L---d~aLlrpGRfd~~-I~v~~P-d~~~R~~IL~~~l 397 (676)
. ..+.+|.||+.|.+.+.+ .....+ ||... |.+.+| +..+-.++++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2 235679999999887764 455566 88865 665544 6778888888776
No 314
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.41 E-value=0.00048 Score=69.89 Aligned_cols=117 Identities=23% Similarity=0.273 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---C------CCEEEEechhHH-H-HHh------h---------------h
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---G------VPFFSLSGSEFI-E-MFV------G---------------V 290 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~------~p~i~is~s~~~-~-~~~------g---------------~ 290 (676)
|.....-+.|+||||+|||+++..+|... + ..+++++..+-. . .+. + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 33333448999999999999999998754 3 566777664310 0 000 0 0
Q ss_pred hhHHHHHHHHHH----hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 291 GASRVRDLFNKA----KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 291 ~~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
....+...+... ....+++|+||-+..+....... .....++.+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 111122222222 24577899999999886432110 0012344456677777776665556666666654
No 315
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00028 Score=67.67 Aligned_cols=104 Identities=32% Similarity=0.446 Sum_probs=61.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCC--EEEEechhHH-------HHHhh-----hhhHHHHHHHHHHhhCCCeEEEEcC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVP--FFSLSGSEFI-------EMFVG-----VGASRVRDLFNKAKANSPCLVFIDE 314 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p--~i~is~s~~~-------~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDE 314 (676)
-+.|.||+|+|||+|++++++..... -+.+++.... ...++ .+....+-.+..+-...|.++++||
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 48999999999999999999976321 1223222110 01011 1123344556667777899999999
Q ss_pred CccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 315 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 315 ID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
...-. +......+.+++.++- .. +..+|.+|+..+.+.
T Consensus 107 p~~~l----------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 107 PTSGL----------DPASRERLLELLRELA---EE-GRTVIIVTHDPELAE 144 (157)
T ss_pred CCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 86653 3333445555555542 22 345677777766544
No 316
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.40 E-value=0.00044 Score=70.60 Aligned_cols=116 Identities=21% Similarity=0.238 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhH------HHHH--hh---------------hh
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSEF------IEMF--VG---------------VG 291 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~~------~~~~--~g---------------~~ 291 (676)
.+...-+.|+||||+|||+++..++... +..+++++..+- .+.. .+ ..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 3333448999999999999999998543 256777776441 1100 00 00
Q ss_pred hHHH----HHHHHHHhhC-CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 292 ASRV----RDLFNKAKAN-SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 292 ~~~v----r~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
...+ ..+-...... .+++|+||-+..+......+ .....+..+.+.+++..+..+....++.||.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0111 1222223344 78999999999886421110 0112345556677777776665556677776644
No 317
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.40 E-value=0.00044 Score=84.44 Aligned_cols=135 Identities=28% Similarity=0.355 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH--Hhhh-------hhHHHHH-HHHHHhhCCCeEEEEcCC
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM--FVGV-------GASRVRD-LFNKAKANSPCLVFIDEI 315 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~--~~g~-------~~~~vr~-lF~~A~~~~P~ILfIDEI 315 (676)
+.+++||.|.||+|||+|+.|+|++.|-.++.++.++-.+. .+|. ++-++++ -|-.|.+ ....+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehh
Confidence 35679999999999999999999999999999998864432 1111 1112221 1222222 2348999998
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHhcc------------CCCCCCeEEEEecCCccc------ccccccCCCccce
Q 005815 316 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDG------------FTGNSGVIVIAATNRPEI------LDSALHRPGRFDR 377 (676)
Q Consensus 316 D~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~------------~~~~~~ViVIaaTN~~~~------Ld~aLlrpGRfd~ 377 (676)
... .+.++..|-.++|. |.-+.+..|+||-|+.+. |+..++. ||.
T Consensus 1621 NLa--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs- 1683 (4600)
T COG5271 1621 NLA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS- 1683 (4600)
T ss_pred hhh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-
Confidence 654 23344444444442 333567899999886543 7888887 894
Q ss_pred EEecCCCCHHHHHHHHHHHhc
Q 005815 378 QVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 378 ~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
+|.+.....++...|......
T Consensus 1684 vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1684 VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred eEEecccccchHHHHHHhhCC
Confidence 777887877777777766554
No 318
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.00057 Score=63.85 Aligned_cols=37 Identities=38% Similarity=0.658 Sum_probs=30.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHh
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFV 288 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~ 288 (676)
|+++||||+|||++|+.++...+ ...++..++.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999988 55577666665433
No 319
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00083 Score=65.59 Aligned_cols=109 Identities=27% Similarity=0.325 Sum_probs=63.3
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhcCC--CEEEEech-------h-------------H------HHHHhhhhh
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGS-------E-------------F------IEMFVGVGA 292 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s-------~-------------~------~~~~~g~~~ 292 (676)
......| +.|.||+|+|||+|++.+++.... --+.+++. . + .+...-.+.
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3344444 899999999999999999986410 00111110 0 0 000001122
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 293 SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 293 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
++.|-.+..|....|.++++||..+-. +......+.+++..+. .+ +..+|.+|+.++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~~~ 158 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELK---KE-GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 344556777778899999999986653 3444555556666552 22 34567777766543
No 320
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.37 E-value=0.00053 Score=67.52 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=59.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----------C-------------EEEEech----hHH------HHH-h---hhh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV----------P-------------FFSLSGS----EFI------EMF-V---GVG 291 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~----------p-------------~i~is~s----~~~------~~~-~---g~~ 291 (676)
.+.|.||+|+|||+|++.+++.... + +.++... .+. +.. . -.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~ 107 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLSG 107 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhcCH
Confidence 3899999999999999999986510 0 1111100 000 000 0 011
Q ss_pred hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 292 ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 292 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
..+.+-.+..|....|.+|++||..+-. +....+.+.+++..+.. . +..+|.+|+..+.+
T Consensus 108 G~~qrl~la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~~~ 167 (182)
T cd03215 108 GNQQKVVLARWLARDPRVLILDEPTRGV----------DVGAKAEIYRLIRELAD---A-GKAVLLISSELDEL 167 (182)
T ss_pred HHHHHHHHHHHHccCCCEEEECCCCcCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 2223445666777889999999975543 44455566666666531 2 34567777765443
No 321
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.37 E-value=0.00045 Score=80.32 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=27.0
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++......++| +.|.||+|+|||||++.+++..
T Consensus 359 l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred ccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44555566555 9999999999999999999965
No 322
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.35 E-value=0.00017 Score=64.26 Aligned_cols=33 Identities=33% Similarity=0.525 Sum_probs=23.7
Q ss_pred CCCCCcceeHHHHHHHHhcCCccEEEEeeCceE
Q 005815 77 IEYTSNRMTYSRFLQYLDEGSVKKVDLFENGNV 109 (676)
Q Consensus 77 ~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 109 (676)
.+.+..+++||+|+++|++|+|++|.+.++...
T Consensus 23 ~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~ 55 (110)
T PF06480_consen 23 NNSQTKEISYSEFLQMLEKGNVKKVVIQNDKIT 55 (110)
T ss_dssp ---SSEE--HHHHHHTGGGT-EEEEEEETTTEE
T ss_pred ccCCCcEECHHHHHHHHHcCCEEEEEEECCEEE
Confidence 345677899999999999999999999876554
No 323
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.35 E-value=0.00047 Score=67.76 Aligned_cols=104 Identities=27% Similarity=0.402 Sum_probs=61.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEEech--------hHHHH--H-------hhh------------hhHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGS--------EFIEM--F-------VGV------------GASRVRD 297 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s--------~~~~~--~-------~g~------------~~~~vr~ 297 (676)
-+.|.||+|+|||+|++.+++.... --+.+++. .+... | ++. +..+.+-
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl 106 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRV 106 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 3899999999999999999997521 11222221 11100 0 000 1223445
Q ss_pred HHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 298 LFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 298 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
.+..|....|.++++||...-. +....+.+.+++.++. .+.+..+|.+|+.++.+
T Consensus 107 ~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 107 LLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLA---RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 5666777899999999976543 3344555666666552 22134667777776543
No 324
>PF14516 AAA_35: AAA-like domain
Probab=97.34 E-value=0.009 Score=64.72 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=86.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH-------HHhhh------------------------hhHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE-------MFVGV------------------------GASR 294 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~-------~~~g~------------------------~~~~ 294 (676)
-+.++||..+|||++...+...+ |...+++++..+.. .+... ....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 48999999999999999987665 67777777654311 11000 1112
Q ss_pred HHHHHHHH---hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC---CCCeEEEEec-CCcccccc
Q 005815 295 VRDLFNKA---KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG---NSGVIVIAAT-NRPEILDS 367 (676)
Q Consensus 295 vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~---~~~ViVIaaT-N~~~~Ld~ 367 (676)
....|+.. ....|-||+|||+|.+.... ......+..|-...+.-.. -..+.+|.+. ..+.....
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccCc--------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 23344431 23578899999999996321 1112233222222221111 1123233222 22222222
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCc
Q 005815 368 ALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFS 419 (676)
Q Consensus 368 aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~s 419 (676)
.-.+|=.+...|.++.-+.++-..+++.|-.. ..... ++.+-..|.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCCCH
Confidence 22344344456777777888888888776422 33333 788888888864
No 325
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0014 Score=78.22 Aligned_cols=163 Identities=22% Similarity=0.349 Sum_probs=107.1
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEechh
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSLSGSE 282 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~is~s~ 282 (676)
++-++|. .-++++.+++-|.... .++-+|.|.||+|||.++.-+|... +..++.++...
T Consensus 185 ldPvigr--~deeirRvi~iL~Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 185 LDPVIGR--HDEEIRRVIEILSRKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCCccCC--chHHHHHHHHHHhccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 5556675 2234455555543332 2568999999999999999999876 33466666654
Q ss_pred HH--HHHhhhhhHHHHHHHHHHh-hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 283 FI--EMFVGVGASRVRDLFNKAK-ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 283 ~~--~~~~g~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
+. .++.|..+.+++++.+.+. .....||||||++.+...... .......|-|--.+ .++++-+|+||
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~nlLkp~L----~rg~l~~IGat 323 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAANLLKPLL----ARGGLWCIGAT 323 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHHhhHHHH----hcCCeEEEecc
Confidence 33 3456778889999998887 445679999999999754322 11233333332222 34558899988
Q ss_pred CCccc-----ccccccCCCccceEEecCCCCHHHHHHHHHHHhcC
Q 005815 360 NRPEI-----LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN 399 (676)
Q Consensus 360 N~~~~-----Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~ 399 (676)
...+. -||++-| ||+ .+.++.|+...-..||+.....
T Consensus 324 T~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 324 TLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 74332 5899999 997 5577888877766676654433
No 326
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.34 E-value=0.00021 Score=81.15 Aligned_cols=63 Identities=24% Similarity=0.459 Sum_probs=44.0
Q ss_pred cccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-CCCEEEEec
Q 005815 212 TFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSLSG 280 (676)
Q Consensus 212 ~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-~~p~i~is~ 280 (676)
-|+|+.|++++++.+-+.+.. .- ..++ ...+-++|.||||+|||+|++++|..+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~---Aa--~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRH---AA--QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHH---HH--HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 588999999998877655522 10 1111 122468999999999999999999876 346665543
No 327
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.34 E-value=0.00054 Score=67.45 Aligned_cols=35 Identities=51% Similarity=0.817 Sum_probs=29.1
Q ss_pred hHHhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 237 EKFAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 237 ~~~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+....+++| ++|+||+|.|||+|.|.+..+.
T Consensus 16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3555666777777 8999999999999999998865
No 328
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.00063 Score=78.55 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=27.4
Q ss_pred HHhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 238 KFAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 238 ~~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.++++...++.| +-|+||+|.|||++|.-+-+-.
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 456666666665 9999999999999999987744
No 329
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.32 E-value=0.0021 Score=66.21 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechh
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSLSGSE 282 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~p~i~is~s~ 282 (676)
|......+|++||||+|||+++..++.+ .|.+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4444455999999999999999877654 377888876543
No 330
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.32 E-value=0.00051 Score=80.00 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccC
Q 005815 292 ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHR 371 (676)
Q Consensus 292 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlr 371 (676)
.++.|-.+.+|-...|.|+++||.-+-. +.+.++.+.+.+..+. .+..+|..|++++.+ +
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaL----------D~~te~~i~~~l~~~~-----~~~TvIiItHrl~~i-----~ 548 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASL----------DAHSEQLVMQALNAAS-----RRQTTLMVTHQLEDL-----A 548 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHh-----CCCEEEEEecChHHH-----H
Confidence 3445566677777889999999986653 3444444444444431 223567777876543 3
Q ss_pred CCccceEEecC
Q 005815 372 PGRFDRQVSVG 382 (676)
Q Consensus 372 pGRfd~~I~v~ 382 (676)
.+|+++.++
T Consensus 549 --~aD~Iivl~ 557 (588)
T PRK11174 549 --QWDQIWVMQ 557 (588)
T ss_pred --hCCEEEEEe
Confidence 577777774
No 331
>PRK04296 thymidine kinase; Provisional
Probab=97.30 E-value=0.0006 Score=67.85 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=41.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEech----hHHH---HHhhhh-----hHHHHHHHHHHh--hCCCeEEEE
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS----EFIE---MFVGVG-----ASRVRDLFNKAK--ANSPCLVFI 312 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s----~~~~---~~~g~~-----~~~vr~lF~~A~--~~~P~ILfI 312 (676)
++++||||+|||+++..++.++ +..++.+..+ .... ...|.. .....+++..+. ...+.+|+|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviI 84 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLI 84 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEE
Confidence 7899999999999998888765 5555555331 1100 001110 112234444432 345679999
Q ss_pred cCCccc
Q 005815 313 DEIDAV 318 (676)
Q Consensus 313 DEID~l 318 (676)
||++.+
T Consensus 85 DEaq~l 90 (190)
T PRK04296 85 DEAQFL 90 (190)
T ss_pred EccccC
Confidence 999766
No 332
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00048 Score=67.61 Aligned_cols=111 Identities=25% Similarity=0.396 Sum_probs=64.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhcCCC--EEEEech----------hHHH----------HHh---------
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEAGVP--FFSLSGS----------EFIE----------MFV--------- 288 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~~~p--~i~is~s----------~~~~----------~~~--------- 288 (676)
.....++| +.|.||+|+|||+|++++++..... -+.+++. .+.. .+.
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHhee
Confidence 33444444 8899999999999999999864210 0111110 0000 000
Q ss_pred --hhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 289 --GVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 289 --g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
-.+..+.|-.+..|....|.++++||..+-. +......+.+++.++. ...+..+|.+|+.++.+
T Consensus 99 ~~lS~G~~qr~~la~al~~~p~llilDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 99 LGLSGGQQQRVALARALAMDPDVLLLDEPTSAL----------DPITRREVRALLKSLQ---AQLGITVVLVTHDLDEA 164 (178)
T ss_pred ecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 0112344556677778899999999975543 4445556666666553 22234566667766544
No 333
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.30 E-value=0.0014 Score=64.94 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=53.9
Q ss_pred EEEEcCCCChHHHHHHHHHH-----hcCCCE--------------EEEechhHHHHHhhhhhHHHHHHHHHHh-hCCCeE
Q 005815 250 VLLVGPPGTGKTLLAKAIAG-----EAGVPF--------------FSLSGSEFIEMFVGVGASRVRDLFNKAK-ANSPCL 309 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~-----e~~~p~--------------i~is~s~~~~~~~g~~~~~vr~lF~~A~-~~~P~I 309 (676)
++|+||.|.|||++.|.++- .+|.++ ..+...+......+.....++.+-..+. ...|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 78999999999999999983 334322 1122222221111111122222211111 247899
Q ss_pred EEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 310 VFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 310 LfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
+++||+..-. ...........++..+.. ..+..+|.+|+..+.
T Consensus 82 lllDEp~~g~---------d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~l 124 (185)
T smart00534 82 VLLDELGRGT---------STYDGVAIAAAVLEYLLE---KIGALTLFATHYHEL 124 (185)
T ss_pred EEEecCCCCC---------CHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHHH
Confidence 9999985542 122233444555555432 123467777887653
No 334
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.30 E-value=0.0047 Score=66.71 Aligned_cols=160 Identities=17% Similarity=0.219 Sum_probs=91.2
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH------HH
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE------MF 287 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~------~~ 287 (676)
..+.+.+.+...|..++ .+. ....|..+.|+|-.|||||.+.|.+-+..+.+.+.+++-+... ..
T Consensus 6 ~~v~~Re~qi~~L~~Ll---g~~------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLL---GNN------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHh---CCC------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 34556666666555443 222 1256778999999999999999999999999999998765432 11
Q ss_pred h-------------hhhhHHHH---HHHHH--Hhh-C-CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC
Q 005815 288 V-------------GVGASRVR---DLFNK--AKA-N-SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 347 (676)
Q Consensus 288 ~-------------g~~~~~vr---~lF~~--A~~-~-~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~ 347 (676)
. ......+. ..|.+ +.. . ..-.|++|.+|.+-.. ....+..|+.. ...
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~-----------~a~ll~~l~~L-~el 144 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM-----------DAILLQCLFRL-YEL 144 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc-----------chHHHHHHHHH-HHH
Confidence 1 01112222 23333 222 2 2458889999999411 11233333332 222
Q ss_pred CCCCCeEEEEecCCcccccccccCCCccc-eEEecCCCCHHHHHHHHHHH
Q 005815 348 TGNSGVIVIAATNRPEILDSALHRPGRFD-RQVSVGLPDIRGREQILKVH 396 (676)
Q Consensus 348 ~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd-~~I~v~~Pd~~~R~~IL~~~ 396 (676)
.....+.+|.+....+. --+.+-|-++ ..++||.|+.++-+.|+..-
T Consensus 145 ~~~~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 145 LNEPTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred hCCCceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22233444443332222 1222234444 37889999999999998654
No 335
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.28 E-value=0.0061 Score=65.21 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCC---------C--
Q 005815 305 NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRP---------G-- 373 (676)
Q Consensus 305 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrp---------G-- 373 (676)
..+-||||||+|.+. .++ +.+++..+.-+-...++++|.+.+.. .+..++... |
T Consensus 171 ~~~iViiIDdLDR~~----------~~~----i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCS----------PEE----IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCC----------cHH----HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 456799999999993 222 33344444334444678888777642 222222110 0
Q ss_pred ----ccceEEecCCCCHHHHHHHHHHHhc
Q 005815 374 ----RFDRQVSVGLPDIRGREQILKVHSN 398 (676)
Q Consensus 374 ----Rfd~~I~v~~Pd~~~R~~IL~~~l~ 398 (676)
-|+..+.+|.|+..+...++...+.
T Consensus 236 yLeKiiq~~~~lP~~~~~~~~~~~~~~~~ 264 (325)
T PF07693_consen 236 YLEKIIQVPFSLPPPSPSDLERYLNELLE 264 (325)
T ss_pred HHHhhcCeEEEeCCCCHHHHHHHHHHHHH
Confidence 4667889999999888888776643
No 336
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.27 E-value=0.0012 Score=67.08 Aligned_cols=108 Identities=24% Similarity=0.278 Sum_probs=60.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhHHHHHhhh----------------------------
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSEFIEMFVGV---------------------------- 290 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~~~~~~~g~---------------------------- 290 (676)
|.+....+|+.||||||||+|+..++.+. |-++++++..+-.+.+...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44444559999999999999999876433 7888888754322211000
Q ss_pred -----hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 291 -----GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 291 -----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
...-...+.+..+...+++++||-+..+. ... ........+..+...+. ..++.++.+.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~-----~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD-----DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS-----SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC-----CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 01112233333445567899999999992 211 23334455666666653 23444444444
No 337
>PRK09354 recA recombinase A; Provisional
Probab=97.26 E-value=0.0016 Score=70.69 Aligned_cols=112 Identities=22% Similarity=0.291 Sum_probs=62.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH-H---hhh------------hhHHHHHHHHHHhhCCCe
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM-F---VGV------------GASRVRDLFNKAKANSPC 308 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~-~---~g~------------~~~~vr~lF~~A~~~~P~ 308 (676)
+-++|+||||||||+|+-.++.++ |..+++++..+-.+. + .|. .++.+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 348899999999999999886544 777788776542221 1 011 111111122233556789
Q ss_pred EEEEcCCccccccCC-CCCCCC--ChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 309 LVFIDEIDAVGRQRG-TGIGGG--NDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 309 ILfIDEID~l~~~r~-~~~~~~--~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
+|+||-+-++.++.. .+..+. .....+.+.+.|..+-......++.+|.+.
T Consensus 141 lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 141 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred EEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 999999999975311 110010 112223444545544444445566676663
No 338
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.25 E-value=0.00078 Score=68.05 Aligned_cols=30 Identities=43% Similarity=0.741 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.....+.| +.|.||+|+|||||++++++..
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 33444444 8999999999999999999865
No 339
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.25 E-value=0.0013 Score=75.55 Aligned_cols=33 Identities=33% Similarity=0.681 Sum_probs=27.0
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.|.||+|+|||||++.+++..
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44455566665 9999999999999999999865
No 340
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.0013 Score=65.41 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=58.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC----CCEEEEec--------------------------hhHHHHH----hhhhhHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSLSG--------------------------SEFIEMF----VGVGASR 294 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~----~p~i~is~--------------------------s~~~~~~----~g~~~~~ 294 (676)
-+.|.||+|+|||+|++.+++... .--+.+++ .+..... .-.+..+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~ 114 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR 114 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHHh
Confidence 388999999999999999997421 00011111 0111000 0011223
Q ss_pred HHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc
Q 005815 295 VRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363 (676)
Q Consensus 295 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~ 363 (676)
.+-.+..|....|.++++||..+-. +....+.+.+++.++. .. +..+|.+|+.++
T Consensus 115 qrv~la~al~~~p~vlllDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiiivtH~~~ 169 (192)
T cd03232 115 KRLTIGVELAAKPSILFLDEPTSGL----------DSQAAYNIVRFLKKLA---DS-GQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---Hc-CCEEEEEEcCCh
Confidence 3445666777889999999986653 4445556666666553 22 345666677654
No 341
>PRK05973 replicative DNA helicase; Provisional
Probab=97.25 E-value=0.0021 Score=66.29 Aligned_cols=34 Identities=41% Similarity=0.397 Sum_probs=27.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS 281 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s 281 (676)
.-++|.|+||+|||+++-.++.+. |.++++++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 348999999999999999887654 7787777754
No 342
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.24 E-value=0.00065 Score=71.14 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=62.7
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC---CEEEEe-chh
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSLS-GSE 282 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~---p~i~is-~s~ 282 (676)
.....+++++.-.+...+.+.+++...- +..+.+++.||+|+|||++++++..+... .++.+. ..+
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred ccccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 3456789999877777666666655421 11246999999999999999999988733 333332 111
Q ss_pred HHHH------Hh-hhhhHHHHHHHHHHhhCCCeEEEEcCCcc
Q 005815 283 FIEM------FV-GVGASRVRDLFNKAKANSPCLVFIDEIDA 317 (676)
Q Consensus 283 ~~~~------~~-g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 317 (676)
+.-. +. ........+++..+....|++|+|+|+-.
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1100 00 01233567788888889999999999843
No 343
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.24 E-value=0.0016 Score=65.16 Aligned_cols=97 Identities=25% Similarity=0.377 Sum_probs=52.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH----hhhhhHHHHHHHHHHh---------hCCCeEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF----VGVGASRVRDLFNKAK---------ANSPCLVF 311 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~----~g~~~~~vr~lF~~A~---------~~~P~ILf 311 (676)
+-++|.||||||||++++.+...+ +..++.+..+.-...- .+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 358889999999999999987654 6677777665432211 1111222333222211 12336999
Q ss_pred EcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 312 IDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 312 IDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
|||+.-+. ...+..|+..... ....+++++=.+
T Consensus 99 VDEasmv~--------------~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 99 VDEASMVD--------------SRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ESSGGG-B--------------HHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred EecccccC--------------HHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 99997773 2345666666543 234566666544
No 344
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.0017 Score=65.69 Aligned_cols=70 Identities=27% Similarity=0.441 Sum_probs=45.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--C------CCEEEEech-hHHHHHhhh-------------hhHHHHHHHHHHhhCC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA--G------VPFFSLSGS-EFIEMFVGV-------------GASRVRDLFNKAKANS 306 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~--~------~p~i~is~s-~~~~~~~g~-------------~~~~vr~lF~~A~~~~ 306 (676)
+.|+.||||+|||++.|-+|.-+ | ..+..++-+ +......|. .+-+-..++...+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 58999999999999999999865 2 233344332 222111111 2222345566678899
Q ss_pred CeEEEEcCCccc
Q 005815 307 PCLVFIDEIDAV 318 (676)
Q Consensus 307 P~ILfIDEID~l 318 (676)
|.|+++|||...
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999999544
No 345
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.24 E-value=0.00076 Score=76.14 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=38.2
Q ss_pred cccchhhHHHHHHHHHH--hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 216 VAGVDEAKQDFQEIVQF--LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~--l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
|.|.+.+|..+.-.+-. -+++.. +...+-.-+|||+|-||||||-+.|.+++-....++..
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 67888888766432211 112210 00111122499999999999999999999876655544
No 346
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.23 E-value=0.00082 Score=77.24 Aligned_cols=33 Identities=39% Similarity=0.689 Sum_probs=26.9
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++...+.++| +.|.||+|+|||+|++.+++..
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555566665 9999999999999999999865
No 347
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.23 E-value=0.0018 Score=67.76 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGS 281 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s 281 (676)
....-++|.||||+|||+++..+|..+ +.++++++..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 333458999999999999999887654 6777777753
No 348
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.23 E-value=0.00069 Score=69.11 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999854
No 349
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.23 E-value=0.0058 Score=61.32 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
+.-++++|+||+|||++++.+|.+++.++ +..+++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~ 38 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYL 38 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHH
Confidence 34589999999999999999999988755 4445543
No 350
>PRK06762 hypothetical protein; Provisional
Probab=97.23 E-value=0.0012 Score=63.64 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
|.-++|+|+||+|||++|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 4568999999999999999999998766777777666654
No 351
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.22 E-value=0.00083 Score=67.99 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||||++.+++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999864
No 352
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.0014 Score=65.95 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||||++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999864
No 353
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.22 E-value=0.00062 Score=81.13 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=27.1
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.+.||+|+|||||++.+++..
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555566665 9999999999999999999865
No 354
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.21 E-value=0.0014 Score=65.92 Aligned_cols=29 Identities=41% Similarity=0.699 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+++| +.|.||+|+|||+|++.+++..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444 8899999999999999999864
No 355
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.20 E-value=0.0015 Score=65.19 Aligned_cols=101 Identities=24% Similarity=0.336 Sum_probs=58.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--CCC--EEEEec---------------------------hhHHHHH----hhhhhH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA--GVP--FFSLSG---------------------------SEFIEMF----VGVGAS 293 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~--~~p--~i~is~---------------------------s~~~~~~----~g~~~~ 293 (676)
.+.|.||+|+|||+|.+.+++.. ... -+.+++ .+..... .-.+.+
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~ 116 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGE 116 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHH
Confidence 48999999999999999999975 210 011110 0000000 001122
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~ 363 (676)
+.+-.+..|....|.++++||...-. +....+.+.+++.++. .. +..+|.+|+.++
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 172 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGL----------DSSSALQVMSLLRRLA---DT-GRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEecCch
Confidence 34455666777889999999986553 3344455556665542 22 345666666653
No 356
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.20 E-value=0.00067 Score=80.63 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=26.5
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.|+||+|+|||||++.+++..
T Consensus 481 L~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445555555 9999999999999999999865
No 357
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.20 E-value=0.0029 Score=57.28 Aligned_cols=24 Identities=46% Similarity=0.548 Sum_probs=21.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
++++++||+|+|||+.+-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998887766
No 358
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.18 E-value=0.0014 Score=66.26 Aligned_cols=29 Identities=45% Similarity=0.667 Sum_probs=23.6
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+.| +.|.||+|+|||||++.+++..
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444 8899999999999999999864
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0025 Score=62.77 Aligned_cols=53 Identities=26% Similarity=0.267 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccC
Q 005815 305 NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHR 371 (676)
Q Consensus 305 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlr 371 (676)
....+.++||...-. +.+....++.++..- -..+-+||+||+.|-.++++-.+
T Consensus 147 s~~pLWiLDEP~taL----------Dk~g~a~l~~l~~~H----~~~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 147 SPAPLWILDEPFTAL----------DKEGVALLTALMAAH----AAQGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred CCCCceeecCccccc----------CHHHHHHHHHHHHHH----hcCCCEEEEecCCccCCCccceE
Confidence 445688999986654 444566777777653 23455899999998888777766
No 360
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.17 E-value=0.00078 Score=79.98 Aligned_cols=33 Identities=36% Similarity=0.654 Sum_probs=26.4
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++...+.++| +.+.||+|+|||||++.+++..
T Consensus 469 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44445555555 9999999999999999999865
No 361
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.17 E-value=0.0011 Score=66.70 Aligned_cols=29 Identities=45% Similarity=0.737 Sum_probs=23.6
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+..| +.|.||+|+|||+|++.+++..
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444 8899999999999999999864
No 362
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.17 E-value=0.0033 Score=68.21 Aligned_cols=157 Identities=23% Similarity=0.303 Sum_probs=87.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEE---EechhHHHHHhhhhhHHHHHHHHH-------------------
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS---LSGSEFIEMFVGVGASRVRDLFNK------------------- 301 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~---is~s~~~~~~~g~~~~~vr~lF~~------------------- 301 (676)
..+|+|++|||.-|||||+|.-.+-..+.. ... +.-.+|... .-+++.++-.+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~----VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~ 185 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLS----VHKRMHELKQEQGAEKPGYAKSWEIDPLPV 185 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHH----HHHHHHHHHHhccccCccccccccCCccHH
Confidence 456999999999999999999888755421 111 111222211 11111111110
Q ss_pred ---HhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc-ccccccccCCCccce
Q 005815 302 ---AKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP-EILDSALHRPGRFDR 377 (676)
Q Consensus 302 ---A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~-~~Ld~aLlrpGRfd~ 377 (676)
--....++|.+||+..- +-...-++++|...+- +.||+++||+|+. +.|-..=+ .+
T Consensus 186 vA~eIa~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGl-----QR 245 (467)
T KOG2383|consen 186 VADEIAEEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGL-----QR 245 (467)
T ss_pred HHHHHhhhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcch-----hh
Confidence 01122369999998543 1122346777776652 3589999999964 44432212 12
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCC---CCcH-HHHHHHHHHHH
Q 005815 378 QVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTP---GFSG-ADLANLMNEAA 431 (676)
Q Consensus 378 ~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~---G~sg-adL~~lv~~A~ 431 (676)
...+ | -..+|+.++.-..+...+|....+.... .|.+ .|.+.++++-.
T Consensus 246 ~~F~--P----fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 246 ENFI--P----FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hhhh--h----HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 2222 2 2567888888888888888883333221 1233 37777777665
No 363
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.001 Score=68.04 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...++.| +.|.||+|+|||||++.+++..
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444 8999999999999999999864
No 364
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.16 E-value=0.002 Score=59.72 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=39.6
Q ss_pred cccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 214 DDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
..|.|++-|++.+.+.+.. +.++ ..+.|--+-|+||||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3589999999988887765 4433 12223346689999999999999999985
No 365
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.16 E-value=0.0072 Score=73.72 Aligned_cols=151 Identities=19% Similarity=0.289 Sum_probs=82.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEech-------hHHHHHhhh------h-----------------hHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS-------EFIEMFVGV------G-----------------ASRVRD 297 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s-------~~~~~~~g~------~-----------------~~~vr~ 297 (676)
+-++++||+|.|||+++...+...+ ++.-++.. .|...+... . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3499999999999999999987766 66555442 121111000 0 001222
Q ss_pred HHHHHhh-CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccc-cccCCCcc
Q 005815 298 LFNKAKA-NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDS-ALHRPGRF 375 (676)
Q Consensus 298 lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~-aLlrpGRf 375 (676)
++..... ..|.+|+|||++.+- +......+..|+..+ ..++.+|.++.....++- .+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~--- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR--- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc---
Confidence 3333222 678999999999982 223344566666553 233333334443111211 11111
Q ss_pred ceEEecC----CCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCc
Q 005815 376 DRQVSVG----LPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFS 419 (676)
Q Consensus 376 d~~I~v~----~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~s 419 (676)
+..+.+. .-+.++-.+++...+.. .++ ..+...+.+.|.|+.
T Consensus 174 ~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~~-~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 174 DQLLEIGSQQLAFDHQEAQQFFDQRLSS-PIE-AAESSRLCDDVEGWA 219 (903)
T ss_pred CcceecCHHhCCCCHHHHHHHHHhccCC-CCC-HHHHHHHHHHhCChH
Confidence 2234444 45778888888765443 232 334678888888853
No 366
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.16 E-value=0.0025 Score=65.36 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEec
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSG 280 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~ 280 (676)
|.....-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 44444458999999999999999887654 788888874
No 367
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.16 E-value=0.0016 Score=69.33 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 297 DLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 297 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
-.+..|..+.|.++|+||.-+= -+......+.+++..+ ....+..|+.+|+.++.+.
T Consensus 145 l~ia~aL~~~P~lliLDEPt~G----------LDp~~~~~~~~~l~~l---~~~g~~tvlissH~l~e~~ 201 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSG----------LDPESRREIWELLREL---AKEGGVTILLSTHILEEAE 201 (293)
T ss_pred HHHHHHHhcCCCEEEECCCCcC----------CCHHHHHHHHHHHHHH---HhCCCcEEEEeCCcHHHHH
Confidence 3445566688999999997443 3455555666666665 3344478888999876644
No 368
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.15 E-value=0.0015 Score=65.41 Aligned_cols=23 Identities=48% Similarity=0.605 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999999864
No 369
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.15 E-value=0.0013 Score=65.83 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAG 269 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~ 269 (676)
-++|+||+|+|||++.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 499999999999999999983
No 370
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.15 E-value=0.0032 Score=65.51 Aligned_cols=77 Identities=25% Similarity=0.411 Sum_probs=49.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHH------hcCCCEEEEechhHHHHHh-hhhhHHHHHHHHHH--------hhCCC
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAG------EAGVPFFSLSGSEFIEMFV-GVGASRVRDLFNKA--------KANSP 307 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~------e~~~p~i~is~s~~~~~~~-g~~~~~vr~lF~~A--------~~~~P 307 (676)
..+....+||.||.|.||++||+-+-. ++.-+|+.++|..+..... ...-..++..|.-| +....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 334445699999999999999999853 4578999999987642200 00001122222222 12334
Q ss_pred eEEEEcCCcccc
Q 005815 308 CLVFIDEIDAVG 319 (676)
Q Consensus 308 ~ILfIDEID~l~ 319 (676)
..+|+|||..++
T Consensus 284 gmlfldeigelg 295 (531)
T COG4650 284 GMLFLDEIGELG 295 (531)
T ss_pred ceEehHhhhhcC
Confidence 699999999996
No 371
>PRK10536 hypothetical protein; Provisional
Probab=97.14 E-value=0.0012 Score=68.56 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-+++.||+|||||+||.+++.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999885
No 372
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.14 E-value=0.0015 Score=66.01 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+.| +.|.||+|+|||||++.+++..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3344444 8899999999999999999864
No 373
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.14 E-value=0.00087 Score=78.13 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=26.5
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.|.|++|+|||||++.+++..
T Consensus 357 l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34445555555 9999999999999999999865
No 374
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.0012 Score=67.39 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+.|.||+|+|||+|++.+++..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999865
No 375
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.13 E-value=0.0015 Score=70.23 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=66.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh-HH-HHH------hhhh---------------
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSE-FI-EMF------VGVG--------------- 291 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~-~~-~~~------~g~~--------------- 291 (676)
.....-+.|+||||+|||.|+..+|-.. +..+++++..+ |. +.. .+..
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 3333448899999999999999887422 45677776543 11 100 0110
Q ss_pred h----HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 292 A----SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 292 ~----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
. ..+..+-.......+.+|+||-|-++.+....+ .+...++++.+.+++..|..+....++.||.+..
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNq 244 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQ 244 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECc
Confidence 0 111122222234568899999999987542221 1223344556777777666665566666666533
No 376
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.0016 Score=64.27 Aligned_cols=35 Identities=34% Similarity=0.696 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
.|+|.||||+||||+|+.+|+. .++..++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 3899999999999999999999 5556666555443
No 377
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.0013 Score=66.56 Aligned_cols=30 Identities=43% Similarity=0.756 Sum_probs=24.0
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+++| +.|.||+|+|||+|++.+++..
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444 8899999999999999999864
No 378
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.12 E-value=0.00085 Score=67.14 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=59.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC----CCEEEEechh--------H-----------------------HHHHhh--hh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSLSGSE--------F-----------------------IEMFVG--VG 291 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~----~p~i~is~s~--------~-----------------------~~~~~g--~~ 291 (676)
-+.|.||+|+|||+|.+.+++... .--+.+++.+ . ...+.. .+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~ 107 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSG 107 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhccccCCH
Confidence 499999999999999999999721 0011111110 0 000000 01
Q ss_pred hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 292 ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 292 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
..+.+-.+..|....|.++++||...-. +......+.+++..+. .. +..+|.+|+.++.
T Consensus 108 G~~qrv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~L~~~~---~~-~~tiii~sh~~~~ 166 (200)
T cd03217 108 GEKKRNEILQLLLLEPDLAILDEPDSGL----------DIDALRLVAEVINKLR---EE-GKSVLIITHYQRL 166 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHH
Confidence 2234455666777889999999975442 3444555666666552 12 3456667776654
No 379
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.11 E-value=0.0012 Score=78.52 Aligned_cols=33 Identities=30% Similarity=0.551 Sum_probs=26.3
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.+.....++| +.|.||+|+|||||++.+++..
T Consensus 473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44445555555 9999999999999999999865
No 380
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.11 E-value=0.00044 Score=73.82 Aligned_cols=69 Identities=25% Similarity=0.349 Sum_probs=46.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC-----CCEEEEe-chhHH-------HHHhhhhhHHHHHHHHHHhhCCCeEEEEc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSLS-GSEFI-------EMFVGVGASRVRDLFNKAKANSPCLVFID 313 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~-----~p~i~is-~s~~~-------~~~~g~~~~~vr~lF~~A~~~~P~ILfID 313 (676)
.++++++||+|+|||++++++++... ..++.+. ..++. ..........+.+++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 35799999999999999999998762 2233331 11111 00011122256788888889999999999
Q ss_pred CC
Q 005815 314 EI 315 (676)
Q Consensus 314 EI 315 (676)
|+
T Consensus 212 Ei 213 (299)
T TIGR02782 212 EV 213 (299)
T ss_pred cc
Confidence 98
No 381
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.0027 Score=70.03 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEechhHHH-------HHh---h------hhhHHHHHHHHHH
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSLSGSEFIE-------MFV---G------VGASRVRDLFNKA 302 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~-------~~p~i~is~s~~~~-------~~~---g------~~~~~vr~lF~~A 302 (676)
.|+-++|+||+|+||||++..+|..+ +..+..+++..+.. .|. + .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35679999999999999999998764 23444444433211 111 1 1222333333333
Q ss_pred hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC-CCeEEEEecCCcccccccc
Q 005815 303 KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN-SGVIVIAATNRPEILDSAL 369 (676)
Q Consensus 303 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~~~~Ld~aL 369 (676)
..-.+|+||++.... .+.. .+.++...++..... ..++|+.+|.....+...+
T Consensus 253 --~~~DlVLIDTaGr~~---------~~~~---~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 253 --KDFDLVLVDTIGKSP---------KDFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --CCCCEEEEcCCCCCc---------cCHH---HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 345799999986652 1111 244444444433322 3567777777776666444
No 382
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.10 E-value=0.00031 Score=68.35 Aligned_cols=59 Identities=22% Similarity=0.419 Sum_probs=35.9
Q ss_pred cccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---EEEEechhH
Q 005815 216 VAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSLSGSEF 283 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---~i~is~s~~ 283 (676)
++|.++..+++...+.. . ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 56777777766665541 1 12235679999999999999999998776332 777777665
No 383
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.10 E-value=0.0013 Score=66.17 Aligned_cols=23 Identities=52% Similarity=0.703 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38899999999999999999865
No 384
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.10 E-value=0.0025 Score=63.76 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIA 268 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA 268 (676)
.++|+||+|+|||+|.|.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 385
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.10 E-value=0.0011 Score=76.78 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=26.0
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++......++| +.+.|++|+|||||++.+++..
T Consensus 348 l~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred ccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33444555544 9999999999999999999865
No 386
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0013 Score=69.08 Aligned_cols=30 Identities=43% Similarity=0.751 Sum_probs=24.0
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+...++.| +-|.||+|+|||||.|.||+-.
T Consensus 21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 21 ISLDIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred ceeeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 34444555 8899999999999999999843
No 387
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.09 E-value=0.0011 Score=77.41 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=25.9
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.+.||+|+|||||++.+++..
T Consensus 351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 33444455554 9999999999999999999865
No 388
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.09 E-value=0.0011 Score=76.84 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=25.2
Q ss_pred hhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 241 AVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 241 ~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++....++| +.+.||+|+|||+|++.+++..
T Consensus 358 ~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 358 GLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344455554 9999999999999999999865
No 389
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.08 E-value=0.0023 Score=64.74 Aligned_cols=30 Identities=37% Similarity=0.537 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.......| +.|.||+|+|||+|++.+++..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444444 8899999999999999999864
No 390
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.08 E-value=0.001 Score=67.76 Aligned_cols=29 Identities=38% Similarity=0.652 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.....+| +.|.||+|+|||+|++++++..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444 9999999999999999999864
No 391
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.07 E-value=0.00068 Score=67.13 Aligned_cols=69 Identities=26% Similarity=0.413 Sum_probs=44.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEech-hHHH---HHh----------hhhhHHHHHHHHHHhhCCCeEE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGS-EFIE---MFV----------GVGASRVRDLFNKAKANSPCLV 310 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s-~~~~---~~~----------g~~~~~vr~lF~~A~~~~P~IL 310 (676)
...++|.||+|+|||++++++++... ...+.+... ++.. ... +.....+.+++..+....|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 34699999999999999999998762 122222111 1100 000 1112345677777778889999
Q ss_pred EEcCC
Q 005815 311 FIDEI 315 (676)
Q Consensus 311 fIDEI 315 (676)
+++|+
T Consensus 105 ~igEi 109 (186)
T cd01130 105 IVGEV 109 (186)
T ss_pred EEEcc
Confidence 99998
No 392
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.06 E-value=0.0022 Score=64.22 Aligned_cols=29 Identities=41% Similarity=0.642 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....++| +.|.||+|+|||+|++.+++..
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred eEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444 8999999999999999999864
No 393
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.05 E-value=0.0011 Score=62.85 Aligned_cols=36 Identities=39% Similarity=0.702 Sum_probs=30.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMF 287 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~ 287 (676)
|+|+|+||+|||++++.+|..++.+++..+ .+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~ 37 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQR 37 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHH
Confidence 799999999999999999999999887554 444433
No 394
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.05 E-value=0.0013 Score=71.71 Aligned_cols=67 Identities=19% Similarity=0.379 Sum_probs=44.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CEEEEe-chhHHH---------HHhhhhhHHHHHHHHHHhhCCCeEEEEcC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSLS-GSEFIE---------MFVGVGASRVRDLFNKAKANSPCLVFIDE 314 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~----p~i~is-~s~~~~---------~~~g~~~~~vr~lF~~A~~~~P~ILfIDE 314 (676)
.++++||+|+||||+++++.+...- .++.+. ..++.. .-+|.......+.+..+....|.+|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 4899999999999999999987642 233321 112110 01122222356667777889999999999
Q ss_pred C
Q 005815 315 I 315 (676)
Q Consensus 315 I 315 (676)
+
T Consensus 204 i 204 (343)
T TIGR01420 204 M 204 (343)
T ss_pred C
Confidence 8
No 395
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.05 E-value=0.0019 Score=69.20 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 298 LFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 298 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
.+..|..+.|.+||+||...-. +......+.+++.++. . .+..||.+|+..+.+
T Consensus 148 ~la~aL~~~P~lllLDEPt~gL----------D~~~~~~l~~~l~~l~---~-~g~till~sH~l~e~ 201 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGL----------DPQARHLMWERLRSLL---A-RGKTILLTTHFMEEA 201 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---h-CCCEEEEECCCHHHH
Confidence 3444566889999999975542 4455566666776652 2 256788888877654
No 396
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.05 E-value=0.0023 Score=64.75 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999864
No 397
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.05 E-value=0.00031 Score=68.62 Aligned_cols=22 Identities=45% Similarity=0.860 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++|+|+||+||||+++.+...+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999887
No 398
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0027 Score=72.00 Aligned_cols=68 Identities=28% Similarity=0.258 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCC
Q 005815 293 SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRP 372 (676)
Q Consensus 293 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrp 372 (676)
++.|-...+|-.+.+.++++||.-+=. +.+.++.+.+.+.++-. +-.||..|++...+-
T Consensus 461 Q~QRlaLARAll~~~~l~llDEpTA~L----------D~etE~~i~~~l~~l~~-----~ktvl~itHrl~~~~------ 519 (559)
T COG4988 461 QAQRLALARALLSPASLLLLDEPTAHL----------DAETEQIILQALQELAK-----QKTVLVITHRLEDAA------ 519 (559)
T ss_pred HHHHHHHHHHhcCCCCEEEecCCccCC----------CHhHHHHHHHHHHHHHh-----CCeEEEEEcChHHHh------
Confidence 345666777777778899999975542 55666777766666531 236777778765432
Q ss_pred CccceEEecC
Q 005815 373 GRFDRQVSVG 382 (676)
Q Consensus 373 GRfd~~I~v~ 382 (676)
..|+++.++
T Consensus 520 -~~D~I~vld 528 (559)
T COG4988 520 -DADRIVVLD 528 (559)
T ss_pred -cCCEEEEec
Confidence 456655553
No 399
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.05 E-value=0.0019 Score=71.89 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCC
Q 005815 293 SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRP 372 (676)
Q Consensus 293 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrp 372 (676)
++.|-.+.+|....|.+|++||-.+=. +.+.++.+..-+..+ +..++++|..|++|..|.
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNL----------D~~GE~AL~~Ai~~~----k~rG~~vvviaHRPs~L~------ 536 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNL----------DSEGEAALAAAILAA----KARGGTVVVIAHRPSALA------ 536 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCc----------chhHHHHHHHHHHHH----HHcCCEEEEEecCHHHHh------
Confidence 445556666777899999999975543 445566666555554 235667888889886542
Q ss_pred CccceEEecCC---CCHHHHHHHHHHHhcC
Q 005815 373 GRFDRQVSVGL---PDIRGREQILKVHSNN 399 (676)
Q Consensus 373 GRfd~~I~v~~---Pd~~~R~~IL~~~l~~ 399 (676)
-.|+...+.- -..-.|.+++.+..+.
T Consensus 537 -~~Dkilvl~~G~~~~FG~r~eVLa~~~~~ 565 (580)
T COG4618 537 -SVDKILVLQDGRIAAFGPREEVLAKVLRP 565 (580)
T ss_pred -hcceeeeecCChHHhcCCHHHHHHHhcCC
Confidence 2333332221 1223456677766653
No 400
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.04 E-value=0.0044 Score=62.17 Aligned_cols=126 Identities=24% Similarity=0.325 Sum_probs=76.9
Q ss_pred cChhHHhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc---CCCEEEEech----hHHHH-----------H------
Q 005815 234 QTPEKFAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS----EFIEM-----------F------ 287 (676)
Q Consensus 234 ~~~~~~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s----~~~~~-----------~------ 287 (676)
.+.+.-+++|.-+|-| +++.|+.|||||.|.+.++--+ +....+++.. +|..+ +
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 4455566777766666 8899999999999999997643 4444444432 22111 0
Q ss_pred ------------hhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 288 ------------VGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 288 ------------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
.....+.+..+.+.-+.....+|+||-+..+.... ....+.+++..+..+...+.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCCEEE
Confidence 00112233444444555666799999999886321 23456667777777776665544
Q ss_pred EEecCCcccccccccC
Q 005815 356 IAATNRPEILDSALHR 371 (676)
Q Consensus 356 IaaTN~~~~Ld~aLlr 371 (676)
+. -+|+.++.+.+-
T Consensus 163 lT--vhp~~l~e~~~~ 176 (235)
T COG2874 163 LT--VHPSALDEDVLT 176 (235)
T ss_pred EE--eChhhcCHHHHH
Confidence 43 356777777654
No 401
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.04 E-value=0.0025 Score=63.74 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999999865
No 402
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.04 E-value=0.0027 Score=63.47 Aligned_cols=23 Identities=48% Similarity=0.521 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999999865
No 403
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.04 E-value=0.0056 Score=60.91 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++++++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999964
No 404
>PRK03839 putative kinase; Provisional
Probab=97.03 E-value=0.00052 Score=67.31 Aligned_cols=30 Identities=33% Similarity=0.690 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 899999999999999999999999987654
No 405
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.03 E-value=0.0012 Score=66.32 Aligned_cols=23 Identities=48% Similarity=0.684 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999865
No 406
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.03 E-value=0.0019 Score=78.63 Aligned_cols=179 Identities=19% Similarity=0.202 Sum_probs=97.3
Q ss_pred CCCCeEEEEcCCCChHHHH-HHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCC---------C------e
Q 005815 245 KIPKGVLLVGPPGTGKTLL-AKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANS---------P------C 308 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~L-ArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~---------P------~ 308 (676)
.-.++++++||||+|||+| .-++-++.-..++.++-+.-.. + ..+-..+++-...- | -
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T-~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----T-PSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----C-HHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 3457899999999999996 4566677777777776543110 1 11112222211111 1 3
Q ss_pred EEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC--------CCCeEEEEecCCcccccccccCCCccce---
Q 005815 309 LVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG--------NSGVIVIAATNRPEILDSALHRPGRFDR--- 377 (676)
Q Consensus 309 ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~--------~~~ViVIaaTN~~~~Ld~aLlrpGRfd~--- 377 (676)
|||.|||. +-..+.-. .+..--.+.+|+. -+||-. =.++++.+++|.+..... .-=+-||-+
T Consensus 1566 VLFcDeIn-Lp~~~~y~----~~~vI~FlR~l~e-~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v 1638 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYY----PPTVIVFLRPLVE-RQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPV 1638 (3164)
T ss_pred EEEeeccC-CccccccC----CCceEEeeHHHHH-hcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcCce
Confidence 99999998 43222110 1111111222222 233432 236899999998865320 101113332
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCc-c------------ccH--------HHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005815 378 QVSVGLPDIRGREQILKVHSNNKKLDK-D------------VSL--------SVIATRTPGFSGADLANLMNEAAILAGR 436 (676)
Q Consensus 378 ~I~v~~Pd~~~R~~IL~~~l~~~~l~~-d------------~dl--------~~La~~t~G~sgadL~~lv~~A~~~A~r 436 (676)
.+.+..|.......|.+.++...-+-- + +.+ ....+..-||+|+||-..++.....|..
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT 1718 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAET 1718 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhc
Confidence 677789999999888887765432211 1 000 1111122589999999998877666643
No 407
>PRK13947 shikimate kinase; Provisional
Probab=97.03 E-value=0.0006 Score=66.04 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
.|+|.|+||+|||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 408
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.03 E-value=0.002 Score=69.97 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=64.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh------HHHHH--hhhh---------------h---
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSE------FIEMF--VGVG---------------A--- 292 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~------~~~~~--~g~~---------------~--- 292 (676)
.-+.|+||||||||.|+..+|-.. +..+++++... +.+.. .|.. .
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~ 206 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQ 206 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHH
Confidence 348899999999999999887432 24667776533 11110 0110 0
Q ss_pred -HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 293 -SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 293 -~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
..+..+-.......+.+|+||-|-++.+....+ .+...++++.+.+++..|..+....++.||.+.
T Consensus 207 ~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 207 YNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 111122222334568899999999987542221 112335566677777777665555666666653
No 409
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.03 E-value=0.004 Score=65.32 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=56.6
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCChHHHHHHHHHHhcC---CCEEEEe-chhHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEAG---VPFFSLS-GSEFI 284 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~g-vLL~GPpGTGKT~LArAlA~e~~---~p~i~is-~s~~~ 284 (676)
..+++++.-.++..+.+++++. .++| +++.||+|+|||++++++..... ..++.+. ..++.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 3467777555555555544332 1233 89999999999999999987663 2234331 11111
Q ss_pred HH-----Hh-hhhhHHHHHHHHHHhhCCCeEEEEcCCcc
Q 005815 285 EM-----FV-GVGASRVRDLFNKAKANSPCLVFIDEIDA 317 (676)
Q Consensus 285 ~~-----~~-g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 317 (676)
-. .+ ........+.+..+....|++|+++|+..
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 00 00 01112356677777888999999999843
No 410
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.002 Score=64.61 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 38899999999999999999864
No 411
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0044 Score=67.60 Aligned_cols=147 Identities=20% Similarity=0.293 Sum_probs=91.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--CCCEEEEechhHHHHHh------h--------hhhHHHHHHHHHHhhCCCeEEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA--GVPFFSLSGSEFIEMFV------G--------VGASRVRDLFNKAKANSPCLVFI 312 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~--~~p~i~is~s~~~~~~~------g--------~~~~~vr~lF~~A~~~~P~ILfI 312 (676)
-+|+-|.||.|||||.-.++..+ ..+++|+++.+-..+.. + ..+.++.++++......|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 38889999999999988887765 33899999877554421 1 12345678888888899999999
Q ss_pred cCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCe--EEEEecCCc-ccccccccCCCccceEEecCCCCHHHH
Q 005815 313 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGV--IVIAATNRP-EILDSALHRPGRFDRQVSVGLPDIRGR 389 (676)
Q Consensus 313 DEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~V--iVIaaTN~~-~~Ld~aLlrpGRfd~~I~v~~Pd~~~R 389 (676)
|-|..+....-++..++-....+...+|.+.- +..++ ++++--... ..--|.++- +-.|.+++|.- |....
T Consensus 175 DSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A----K~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFEG-d~~~~ 248 (456)
T COG1066 175 DSIQTLYSEEITSAPGSVSQVREVAAELMRLA----KTKNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFEG-DRHSR 248 (456)
T ss_pred eccceeecccccCCCCcHHHHHHHHHHHHHHH----HHcCCeEEEEEEEcccccccCchhee-eeeeEEEEEec-cCCCc
Confidence 99999987654444444444444555554432 33343 334322222 223344443 25666777753 44455
Q ss_pred HHHHHHHhcCCC
Q 005815 390 EQILKVHSNNKK 401 (676)
Q Consensus 390 ~~IL~~~l~~~~ 401 (676)
.+||+.+-....
T Consensus 249 ~RiLR~vKNRFG 260 (456)
T COG1066 249 YRILRSVKNRFG 260 (456)
T ss_pred eeeeehhcccCC
Confidence 667766544333
No 412
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.0015 Score=65.87 Aligned_cols=30 Identities=40% Similarity=0.692 Sum_probs=24.0
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.......| +.|.||+|+|||+|++.+++..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444444 8899999999999999999854
No 413
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.02 E-value=0.0053 Score=64.16 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=28.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS 281 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s 281 (676)
.....-++++||||||||+++-.+|.+. |-++++++..
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3333449999999999999999886643 6677777654
No 414
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.02 E-value=0.0016 Score=75.71 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=26.5
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.......++| +.|.||+|+|||||++.+++..
T Consensus 331 l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred ccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44455555555 9999999999999999999865
No 415
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.01 E-value=0.0011 Score=78.93 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=26.9
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.|.||+|+|||||++.+++..
T Consensus 497 L~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred ccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44455556665 9999999999999999999865
No 416
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.01 E-value=0.0029 Score=67.70 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=65.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh-HH-----HH--Hhhhhh-------------
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSE-FI-----EM--FVGVGA------------- 292 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~-~~-----~~--~~g~~~------------- 292 (676)
|.....-++++||||+|||+++-.+|..+ +..+++++..+ |. +. ..+...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 33434448899999999999999998663 23677887654 11 10 001100
Q ss_pred ---H---HHHHHHHHHhhC--CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 293 ---S---RVRDLFNKAKAN--SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 293 ---~---~vr~lF~~A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
. .+..+.+..... .+++|+||-|-.+.+....+ .+...++++.+++++..+..+....++.|+.+..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~-~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG-RGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC-chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0 011222233333 36799999998875432111 1112334455666666665555556666766644
No 417
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.01 E-value=0.0064 Score=61.81 Aligned_cols=109 Identities=23% Similarity=0.279 Sum_probs=61.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhh---------------------h-------
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGV---------------------G------- 291 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~---------------------~------- 291 (676)
|.....-+++.|+||+|||+++..++.+. +.++++++..+-.+..... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 33333458999999999999999887643 7777777764332221100 0
Q ss_pred hHHHH-HHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 292 ASRVR-DLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 292 ~~~vr-~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
...+. .+........++.++||-+..+-.. .+...+....+..++..+. ..++.++.+++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~ 152 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLR----ETGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEc
Confidence 00111 1122234456789999998877211 1123344556666777663 23445555554
No 418
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.00 E-value=0.007 Score=61.64 Aligned_cols=38 Identities=32% Similarity=0.422 Sum_probs=28.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
|......+++.||||+|||+|+..++.+. +.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34444459999999999999999876532 566777764
No 419
>PRK13695 putative NTPase; Provisional
Probab=97.00 E-value=0.0038 Score=60.93 Aligned_cols=22 Identities=45% Similarity=0.668 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++|.|++|+|||+|++.+++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988765
No 420
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.00 E-value=0.0028 Score=68.20 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=66.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhH------HHHH--hhhhh-------------
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSEF------IEMF--VGVGA------------- 292 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~~------~~~~--~g~~~------------- 292 (676)
|.....-++|+||||+|||.++-.+|..+ +..+++++..+- .+.. .+...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34444458899999999999999998653 336777776441 1100 01000
Q ss_pred ------HHHHHHHHHHhh-CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 293 ------SRVRDLFNKAKA-NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 293 ------~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
..+..+...... ..+++|+||-|-++......+ .+...++++.+.+++..+..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG-RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 001111122223 466899999999986432111 1122234555666666665555556677777654
No 421
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.00 E-value=0.0023 Score=68.35 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 298 LFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 298 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
.+..|....|.+|++||.-.-. +......+.+++..+. . .+..||.+|+..+.+
T Consensus 134 ~la~al~~~p~lllLDEPt~gL----------D~~~~~~l~~~l~~~~---~-~g~tvi~~sH~~~~~ 187 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTTGL----------DPRTRRAIWDYIRALK---E-EGVTILLTTHYMEEA 187 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---h-CCCEEEEECCCHHHH
Confidence 3444556889999999975543 4555566666666653 2 245678888876544
No 422
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.99 E-value=0.002 Score=65.69 Aligned_cols=33 Identities=33% Similarity=0.637 Sum_probs=25.8
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++.....+.+| +.|.||+|+|||+|++++++..
T Consensus 38 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444455544 8899999999999999999864
No 423
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00081 Score=72.83 Aligned_cols=30 Identities=50% Similarity=0.769 Sum_probs=24.8
Q ss_pred hhCCCCCCe--EEEEcCCCChHHHHHHHHHHh
Q 005815 241 AVGAKIPKG--VLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 241 ~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e 270 (676)
++...+.+| +-|.||+||||||+.|.||+-
T Consensus 23 ~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred cceeeecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566666 779999999999999999984
No 424
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.004 Score=62.50 Aligned_cols=33 Identities=30% Similarity=0.641 Sum_probs=25.1
Q ss_pred hHHhhhCCCCCCe--EEEEcCCCChHHHHHHHHHH
Q 005815 237 EKFAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAG 269 (676)
Q Consensus 237 ~~~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~ 269 (676)
+..+....++|++ .-|.||+|||||||.|++-.
T Consensus 21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred hhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 3344455566655 77999999999999999965
No 425
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.99 E-value=0.0013 Score=66.50 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999754
No 426
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.99 E-value=0.0019 Score=75.07 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=26.1
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.|.||+|+|||||++.+++..
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444555555 9999999999999999999865
No 427
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.98 E-value=0.0016 Score=65.46 Aligned_cols=29 Identities=45% Similarity=0.769 Sum_probs=23.4
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+.| +.|.||+|+|||||++.+++..
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444 8899999999999999999864
No 428
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.98 E-value=0.0017 Score=61.47 Aligned_cols=32 Identities=38% Similarity=0.776 Sum_probs=28.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
.+||++|-||||||+++..+|...+.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 35999999999999999999999898877664
No 429
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.98 E-value=0.0018 Score=75.48 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCC
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPG 373 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpG 373 (676)
+.|-.+.+|....|.|+++||..+-. +.+.++.+.+.+..+. .+..+|..|++++.+.
T Consensus 477 ~qrl~lARall~~p~ililDEpts~L----------D~~~~~~i~~~l~~~~-----~~~tvI~isH~~~~~~------- 534 (585)
T TIGR01192 477 RQRLAIARAILKNAPILVLDEATSAL----------DVETEARVKNAIDALR-----KNRTTFIIAHRLSTVR------- 534 (585)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCC----------CHHHHHHHHHHHHHHh-----CCCEEEEEEcChHHHH-------
Confidence 33445556666889999999986543 4455555666665542 1346777778875542
Q ss_pred ccceEEecC
Q 005815 374 RFDRQVSVG 382 (676)
Q Consensus 374 Rfd~~I~v~ 382 (676)
.+|+++.+.
T Consensus 535 ~~d~i~~l~ 543 (585)
T TIGR01192 535 NADLVLFLD 543 (585)
T ss_pred cCCEEEEEE
Confidence 467777663
No 430
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0021 Score=67.40 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=26.8
Q ss_pred HHhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 238 KFAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 238 ~~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+......+..| +.|.||+|+|||+|++++++..
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344455555555 8999999999999999999865
No 431
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.97 E-value=0.0013 Score=78.27 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=26.1
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.|.||+|+|||||++.+++..
T Consensus 490 L~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 490 LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33444555555 9999999999999999999865
No 432
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.97 E-value=0.0028 Score=64.94 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 38899999999999999999854
No 433
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.97 E-value=0.0016 Score=67.69 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 39999999999999999999864
No 434
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.97 E-value=0.0046 Score=61.92 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=22.5
Q ss_pred hCCCCCCe-EEEEcCCCChHHHHHHHHHHh
Q 005815 242 VGAKIPKG-VLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 242 ~g~~~p~g-vLL~GPpGTGKT~LArAlA~e 270 (676)
.......| ++|+||+|+|||+|+++++.-
T Consensus 16 ~~l~~~~g~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 16 TTIPFPPGLTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred eeeecCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34444444 789999999999999999854
No 435
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.97 E-value=0.0043 Score=73.62 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhHHH-H---Hhhh------------hhHHHHHHHHHHhhC
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSLSGSEFIE-M---FVGV------------GASRVRDLFNKAKAN 305 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e---~~~p~i~is~s~~~~-~---~~g~------------~~~~vr~lF~~A~~~ 305 (676)
...+-++++||||||||+|+..++.. .|.++++++..+-.. . -.|. .+..+..+-...+..
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~ 137 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSG 137 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcC
Confidence 33344899999999999999766543 366777776544222 1 0111 111111112223456
Q ss_pred CCeEEEEcCCccccccCC-CCCCCCC--hHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 306 SPCLVFIDEIDAVGRQRG-TGIGGGN--DEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 306 ~P~ILfIDEID~l~~~r~-~~~~~~~--~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
.+.+|+||-+.++..+.. .+..+.. ....+.++++|..|..+....++.+|.+-
T Consensus 138 ~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 138 ALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred CCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 789999999999985221 1111111 12334456677766666566677777664
No 436
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.97 E-value=0.0038 Score=61.16 Aligned_cols=95 Identities=15% Similarity=0.240 Sum_probs=54.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-----HHhhh------------hhHHHHHHHHHHhhCCCeEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-----MFVGV------------GASRVRDLFNKAKANSPCLVF 311 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-----~~~g~------------~~~~vr~lF~~A~~~~P~ILf 311 (676)
-+++.||||+|||++|..++.+.+.+++++....... ....+ ....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 3899999999999999999999888877776543211 10000 001122333221 13356899
Q ss_pred EcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc
Q 005815 312 IDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 346 (676)
Q Consensus 312 IDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~ 346 (676)
||-+..+..+.-.. .........+.+++..+..
T Consensus 82 ID~Lt~~~~n~l~~--~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE--EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc--cchHHHHHHHHHHHHHHHc
Confidence 99998886433210 0002234455566666643
No 437
>PRK13946 shikimate kinase; Provisional
Probab=96.96 E-value=0.0022 Score=63.43 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~ 280 (676)
.++.|+|.|+||+|||++++.+|..+|.||+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 34679999999999999999999999999987663
No 438
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.96 E-value=0.0032 Score=63.04 Aligned_cols=30 Identities=33% Similarity=0.650 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+++| +.|.||+|+|||+|.+.+++..
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444 8999999999999999999864
No 439
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0021 Score=62.73 Aligned_cols=32 Identities=28% Similarity=0.598 Sum_probs=29.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
+.++|.|++|+||||+.|++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 45999999999999999999999999998664
No 440
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0012 Score=68.00 Aligned_cols=23 Identities=48% Similarity=0.794 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.++|.||+|+|||||++.+++-+
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcC
Confidence 49999999999999999999865
No 441
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.94 E-value=0.0029 Score=64.20 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999864
No 442
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.93 E-value=0.0021 Score=74.19 Aligned_cols=33 Identities=30% Similarity=0.668 Sum_probs=26.5
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.|.||+|+|||+|++.+++..
T Consensus 334 l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 334 LRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445555555 9999999999999999999875
No 443
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.93 E-value=0.0042 Score=65.21 Aligned_cols=140 Identities=19% Similarity=0.345 Sum_probs=84.4
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCChHHHHHHHHHHhcCC----CEEE
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEAGV----PFFS 277 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~g-vLL~GPpGTGKT~LArAlA~e~~~----p~i~ 277 (676)
+...+..-.+|+++.- .++..++- ..|+| ||++||.|+|||+..-++-+..+. .++.
T Consensus 98 lR~Ip~~i~~~e~Lgl-P~i~~~~~-----------------~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlT 159 (353)
T COG2805 98 LRLIPSKIPTLEELGL-PPIVRELA-----------------ESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILT 159 (353)
T ss_pred EeccCccCCCHHHcCC-CHHHHHHH-----------------hCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEE
Confidence 4445556677888643 44322221 23556 888999999999999999887743 2222
Q ss_pred E---------echhHH-HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC
Q 005815 278 L---------SGSEFI-EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 347 (676)
Q Consensus 278 i---------s~s~~~-~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~ 347 (676)
+ |-..++ ..-+|.........++.|....|+||++-|+-.. +++..-|..-
T Consensus 160 IEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD~----------------ETi~~ALtAA--- 220 (353)
T COG2805 160 IEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEMRDL----------------ETIRLALTAA--- 220 (353)
T ss_pred ecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEeccccH----------------HHHHHHHHHH---
Confidence 2 222222 2234555555666677778889999999998443 3555555543
Q ss_pred CCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHH
Q 005815 348 TGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRG 388 (676)
Q Consensus 348 ~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~ 388 (676)
..+-+|++|-+..+. .. -.||.|.+-++..++
T Consensus 221 --ETGHLV~~TLHT~sA----~~---ti~RiidvFp~~ek~ 252 (353)
T COG2805 221 --ETGHLVFGTLHTNSA----AK---TIDRIIDVFPAEEKD 252 (353)
T ss_pred --hcCCEEEEecccccH----HH---HHHHHHHhCChhhhH
Confidence 345688888654332 22 345666676665443
No 444
>PTZ00035 Rad51 protein; Provisional
Probab=96.93 E-value=0.0039 Score=67.70 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=65.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh------HHHHH--hhhh--------------
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSE------FIEMF--VGVG-------------- 291 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~------~~~~~--~g~~-------------- 291 (676)
|.....-+.|+||||+|||+|+..++... +..+++++... +.... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 33333448899999999999999997543 23456666543 11110 0000
Q ss_pred -----hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEe
Q 005815 292 -----ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAA 358 (676)
Q Consensus 292 -----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 358 (676)
...+..+........+.+|+||-|-++++....+ .+...++++.+.+++..+..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG-RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC-cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 0111112222234567899999999987532111 11233456667777777766555566666655
No 445
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.93 E-value=0.0039 Score=64.68 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||||++.+++..
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999865
No 446
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.93 E-value=0.0043 Score=61.37 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=23.8
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+..| +.|.||+|+|||+|++++++..
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444 8999999999999999999854
No 447
>PRK00625 shikimate kinase; Provisional
Probab=96.93 E-value=0.00076 Score=66.23 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998775
No 448
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.93 E-value=0.0056 Score=63.41 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=29.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE 285 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~ 285 (676)
|+|+|+||+|||++|++++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999877 56777777655533
No 449
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.93 E-value=0.0031 Score=63.29 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 38899999999999999999854
No 450
>PRK14974 cell division protein FtsY; Provisional
Probab=96.93 E-value=0.0071 Score=65.55 Aligned_cols=72 Identities=31% Similarity=0.369 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH-------HHh---hh----------hhHHHHHHHHHHh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE-------MFV---GV----------GASRVRDLFNKAK 303 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~-------~~~---g~----------~~~~vr~lF~~A~ 303 (676)
|.-++|+||||+|||+++..+|..+ +..+..+++..+.. .+. |. ....+.+..+.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 5679999999999999888888765 55555555432211 110 10 0122334444455
Q ss_pred hCCCeEEEEcCCccc
Q 005815 304 ANSPCLVFIDEIDAV 318 (676)
Q Consensus 304 ~~~P~ILfIDEID~l 318 (676)
...-.+|+||....+
T Consensus 220 ~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 220 ARGIDVVLIDTAGRM 234 (336)
T ss_pred hCCCCEEEEECCCcc
Confidence 555568999987555
No 451
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.92 E-value=0.0022 Score=66.43 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=29.7
Q ss_pred HHhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 238 KFAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 238 ~~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
..+++..++|+| +.+.||+|.||||+.|.+.+.+
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc
Confidence 456778889988 8899999999999999998765
No 452
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.92 E-value=0.0025 Score=64.03 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 453
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.92 E-value=0.0038 Score=68.52 Aligned_cols=68 Identities=24% Similarity=0.334 Sum_probs=45.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC-----CCEEEEe-chhHH-----------HHHhhhhhHHHHHHHHHHhhCCCeEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSLS-GSEFI-----------EMFVGVGASRVRDLFNKAKANSPCLVF 311 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~-----~p~i~is-~s~~~-----------~~~~g~~~~~vr~lF~~A~~~~P~ILf 311 (676)
.+|++||+|+||||+++++..+.. ..++.+. ..++. ..-+|.........+..+....|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999988762 2344332 11211 111222222355667777888999999
Q ss_pred EcCCc
Q 005815 312 IDEID 316 (676)
Q Consensus 312 IDEID 316 (676)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 454
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.0016 Score=70.82 Aligned_cols=30 Identities=33% Similarity=0.545 Sum_probs=24.2
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+++| +.|.||+|+|||||++.+++..
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444555 8899999999999999999864
No 455
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.91 E-value=0.00077 Score=66.04 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=28.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
|+++||||+|||++++.+|...++ ..++.+++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHH
Confidence 789999999999999999999875 55566665543
No 456
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.91 E-value=0.0028 Score=64.85 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999865
No 457
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.91 E-value=0.0028 Score=59.33 Aligned_cols=30 Identities=33% Similarity=0.749 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
|.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998876
No 458
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.0025 Score=67.14 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=24.0
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+.+| +.|.||+|+|||+|.+++++..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444444 8999999999999999999864
No 459
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.90 E-value=0.0036 Score=62.83 Aligned_cols=125 Identities=26% Similarity=0.380 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHH
Q 005815 223 KQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKA 302 (676)
Q Consensus 223 k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A 302 (676)
+..+...|.....| |.+....++|.|+.|+|||++.+.|+.+. +.-+..... ..+.... .
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~------~kd~~~~----l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD------DKDFLEQ----L 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCC------CcHHHHH----H
Confidence 44444444443333 55556678999999999999999997662 111111100 0111111 1
Q ss_pred hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHh-ccCCC---------CCCeEEEEecCCcccc-cccccC
Q 005815 303 KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGFTG---------NSGVIVIAATNRPEIL-DSALHR 371 (676)
Q Consensus 303 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~l-d~~~~---------~~~ViVIaaTN~~~~L-d~aLlr 371 (676)
..+ -|+.|||++.+.++ ....+..+++.- +.+.. ....++|+|||..+-| |+.=-|
T Consensus 94 ~~~--~iveldEl~~~~k~-----------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR 160 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK-----------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR 160 (198)
T ss_pred HHh--HheeHHHHhhcchh-----------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe
Confidence 111 39999999998521 123555555542 22221 1136889999998755 344455
Q ss_pred CCccceEEecCC
Q 005815 372 PGRFDRQVSVGL 383 (676)
Q Consensus 372 pGRfd~~I~v~~ 383 (676)
|| ..|.+..
T Consensus 161 --Rf-~~v~v~~ 169 (198)
T PF05272_consen 161 --RF-WPVEVSK 169 (198)
T ss_pred --EE-EEEEEcC
Confidence 66 4555543
No 460
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.0017 Score=66.71 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999864
No 461
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.90 E-value=0.0038 Score=63.58 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+++| +.|.||+|+|||+|++.+++..
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3344444 8999999999999999999854
No 462
>PRK04328 hypothetical protein; Provisional
Probab=96.90 E-value=0.0096 Score=61.85 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=28.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHh---cCCCEEEEec
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSLSG 280 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e---~~~p~i~is~ 280 (676)
|......+|++||||||||+|+..++.+ .|.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3433445999999999999999887654 3677777765
No 463
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.0046 Score=63.12 Aligned_cols=30 Identities=43% Similarity=0.709 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.....++| +.|.||+|+|||+|++.+++..
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33444444 8899999999999999999865
No 464
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.88 E-value=0.0056 Score=62.71 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=23.8
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....++| +.|.||+|+|||+|++.+++..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3444444 9999999999999999999864
No 465
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0031 Score=63.87 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999864
No 466
>PRK13948 shikimate kinase; Provisional
Probab=96.88 E-value=0.0023 Score=63.38 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhh
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVG 289 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g 289 (676)
.+..|+|.|.+|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 4567999999999999999999999999998555 44444443
No 467
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.88 E-value=0.001 Score=65.01 Aligned_cols=38 Identities=26% Similarity=0.507 Sum_probs=32.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+-++|.|+||+|||++|++++..++.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 35899999999999999999999988888776665543
No 468
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.0042 Score=63.90 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999864
No 469
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.87 E-value=0.0019 Score=70.28 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=35.3
Q ss_pred HHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 297 DLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 297 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
-.+..|....|.+|++||.-+-. +......+.+++..+. ...++.||.+|+..+.+
T Consensus 149 V~IARAL~~~P~iLLlDEPts~L----------D~~t~~~i~~lL~~l~---~~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSAL----------DPATTQSILELLKEIN---RRLGLTILLITHEMDVV 204 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 34444556789999999986553 4444555555666552 22356778888876543
No 470
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0019 Score=67.31 Aligned_cols=30 Identities=37% Similarity=0.688 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+++| +.|.||+|+|||||++.+++..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444444 8999999999999999999864
No 471
>PLN02200 adenylate kinase family protein
Probab=96.86 E-value=0.0012 Score=67.88 Aligned_cols=42 Identities=26% Similarity=0.436 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
+.+.|.-+++.||||+|||++++.+|.++|++ .++.+++...
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34455668999999999999999999998865 5777776644
No 472
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.86 E-value=0.016 Score=59.76 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=73.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhHHH---HH-----hhh---------h----hHHHHHHHHHHh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGSEFIE---MF-----VGV---------G----ASRVRDLFNKAK 303 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s~~~~---~~-----~g~---------~----~~~vr~lF~~A~ 303 (676)
|-.+++.|++|||||++++.+.....- ..+.+-...... .+ +.. . ...+........
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 446999999999999999999776532 222221111111 01 100 0 011111221111
Q ss_pred h---CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEe
Q 005815 304 A---NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVS 380 (676)
Q Consensus 304 ~---~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~ 380 (676)
. ..+++|++|++-. .....+.+.+++.. ...-++-+|..+.....+++.++. -.+..+-
T Consensus 93 ~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~ 154 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGD------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFII 154 (241)
T ss_pred ccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEE
Confidence 1 3368999999632 11223455666653 234467888888888889988866 6777776
Q ss_pred cCCCCHHHHHHHHHHHh
Q 005815 381 VGLPDIRGREQILKVHS 397 (676)
Q Consensus 381 v~~Pd~~~R~~IL~~~l 397 (676)
+. -+..+..-|++.+.
T Consensus 155 ~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 155 FN-NSKRDLENIYRNMN 170 (241)
T ss_pred ec-CcHHHHHHHHHhcc
Confidence 64 46666666665543
No 473
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0017 Score=66.63 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++++++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 38899999999999999999754
No 474
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.86 E-value=0.0043 Score=59.98 Aligned_cols=104 Identities=24% Similarity=0.326 Sum_probs=54.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh---------------cCCCEEEEechh-HHHHHhhhhhHHHHHHHHHHhh----CCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE---------------AGVPFFSLSGSE-FIEMFVGVGASRVRDLFNKAKA----NSP 307 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e---------------~~~p~i~is~s~-~~~~~~g~~~~~vr~lF~~A~~----~~P 307 (676)
+..+++||.|+|||++.++++-- .+.+.-..+..- +...-...+. +.+..+..+.. ..|
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~-~~~~~la~~L~~~~~~~~ 100 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGE-KELSALALILALASLKPR 100 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccH-HHHHHHHHHHHhcCCCCC
Confidence 46999999999999999998432 222222222000 0000011111 12222222222 378
Q ss_pred eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 308 CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 308 ~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
+++++||+..-. ...+.......+...... +..+|.+|+.++...
T Consensus 101 ~llllDEp~~gl---------d~~~~~~l~~~l~~~~~~-----~~~vii~TH~~~~~~ 145 (162)
T cd03227 101 PLYILDEIDRGL---------DPRDGQALAEAILEHLVK-----GAQVIVITHLPELAE 145 (162)
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHHHHHHHhc-----CCEEEEEcCCHHHHH
Confidence 999999986653 122334444444444332 346778888876543
No 475
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.85 E-value=0.0042 Score=62.32 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+++| +.|.||+|+|||+|++++++..
T Consensus 27 isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34444444 8999999999999999999864
No 476
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0025 Score=65.25 Aligned_cols=30 Identities=33% Similarity=0.717 Sum_probs=24.0
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+..| +.|.||+|+|||||++++++..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444 8999999999999999999865
No 477
>PRK10908 cell division protein FtsE; Provisional
Probab=96.84 E-value=0.0033 Score=63.80 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||+|++.+++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999865
No 478
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.84 E-value=0.003 Score=68.67 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=35.2
Q ss_pred HHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 299 FNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 299 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
+..|..+.|.+|++||..+-. +......+.+++.++. . .+..||.+|+..+.+.
T Consensus 183 lA~aL~~~P~lLiLDEPt~gL----------D~~~r~~l~~~l~~l~---~-~g~tilisSH~l~e~~ 236 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGL----------DPHARHLIWERLRSLL---A-RGKTILLTTHFMEEAE 236 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHH---h-CCCEEEEECCCHHHHH
Confidence 344555789999999975543 4555666667776653 2 2456788888766543
No 479
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.84 E-value=0.0044 Score=59.16 Aligned_cols=36 Identities=31% Similarity=0.635 Sum_probs=30.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE 285 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~ 285 (676)
++|+|+||+|||++++.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 7899999999999999999988 66777787766554
No 480
>PRK06217 hypothetical protein; Validated
Probab=96.83 E-value=0.0011 Score=65.49 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
.|+|.|+||+|||+++++++..++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3899999999999999999999999887665
No 481
>PRK14531 adenylate kinase; Provisional
Probab=96.82 E-value=0.0012 Score=65.07 Aligned_cols=35 Identities=29% Similarity=0.645 Sum_probs=29.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
+-++++||||+|||++++.+|...|++++. ..++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999877654 44444
No 482
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0029 Score=64.73 Aligned_cols=31 Identities=42% Similarity=0.567 Sum_probs=24.5
Q ss_pred hhCCCCCC--eEEEEcCCCChHHHHHHHHHHhc
Q 005815 241 AVGAKIPK--GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 241 ~~g~~~p~--gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+.....+ .+.|.||+|+|||+|.+.+++..
T Consensus 18 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33344444 49999999999999999999875
No 483
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.81 E-value=0.0044 Score=63.66 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=24.9
Q ss_pred hhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 240 AAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 240 ~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
......+..| +.|.||+|+|||+|++.+++..
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3344444444 8899999999999999999864
No 484
>PRK14532 adenylate kinase; Provisional
Probab=96.81 E-value=0.001 Score=65.62 Aligned_cols=36 Identities=33% Similarity=0.593 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
.++|.||||+|||++++.+|...|+++ ++..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 389999999999999999999988655 555565544
No 485
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.004 Score=65.25 Aligned_cols=29 Identities=41% Similarity=0.689 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+.+| +.|.||+|+|||+|++++++..
T Consensus 29 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444 8899999999999999999864
No 486
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.81 E-value=0.0041 Score=66.96 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=65.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc------C---CCEEEEechhH------HHHH--hhhh---------------
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA------G---VPFFSLSGSEF------IEMF--VGVG--------------- 291 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~------~---~p~i~is~s~~------~~~~--~g~~--------------- 291 (676)
.....-+.++||||+|||+|+..+|..+ | ..+++++..+- .... .+..
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCC
Confidence 3333448899999999999999988632 1 25677766541 1100 0110
Q ss_pred hH----HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 292 AS----RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 292 ~~----~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
.. .+..+........+++|+||-|-++++....+. +....++..+.+++..+..+....++.||.+..
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNq 244 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITNQ 244 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 01 111122222345688999999999864322111 111234455677777776665556666666543
No 487
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0022 Score=66.88 Aligned_cols=29 Identities=41% Similarity=0.692 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+.+| +.|.||+|+|||+|++.+++..
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444 8999999999999999999864
No 488
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.81 E-value=0.0021 Score=69.18 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=46.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEe-chhHHHH------HhhhhhHHHHHHHHHHhhCCCeEEEEcC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLS-GSEFIEM------FVGVGASRVRDLFNKAKANSPCLVFIDE 314 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is-~s~~~~~------~~g~~~~~vr~lF~~A~~~~P~ILfIDE 314 (676)
.+++|++|++|+|||+++++++... +..++.+. ..++.-. +.....-...+++..+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 3579999999999999999999875 22233321 1121100 0011122366788888889999999999
Q ss_pred C
Q 005815 315 I 315 (676)
Q Consensus 315 I 315 (676)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 489
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.02 Score=63.64 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSE 282 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~ 282 (676)
+.-++|.||+|+||||++..+|... |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3458899999999999999999754 44454454443
No 490
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0081 Score=61.54 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSAL 369 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aL 369 (676)
+-+-+|.+|.-..|.+|++||.-.-. ....++..++.|-..... .+.--+|.-|++++.++|-+
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GL---------Dl~~re~ll~~l~~~~~~---~~~~~ll~VtHh~eEi~~~~ 240 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGL---------DLIAREQLLNRLEELAAS---PGAPALLFVTHHAEEIPPCF 240 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccC---------ChHHHHHHHHHHHHHhcC---CCCceEEEEEcchhhccccc
Confidence 34667888888999999999963321 112233444444433322 12334666678888877644
No 491
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.80 E-value=0.0088 Score=67.06 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSE 282 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~ 282 (676)
..|.-++|+|++|+|||+++..+|..+ |..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 346779999999999999999999866 55666665543
No 492
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0055 Score=62.63 Aligned_cols=29 Identities=34% Similarity=0.617 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+++| +.|.||+|+|||+|++.+++..
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3344444 8899999999999999999865
No 493
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0023 Score=66.44 Aligned_cols=71 Identities=31% Similarity=0.307 Sum_probs=47.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechh--------HHHH------Hhh-------------hhhHHHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGSE--------FIEM------FVG-------------VGASRVRDLF 299 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s~--------~~~~------~~g-------------~~~~~vr~lF 299 (676)
.+-|.|++||||||++|.+.+-..- --+.+.+.+ ..+. .+| .+.++.|-.+
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I 120 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence 4889999999999999999986521 112222211 1111 011 1344556677
Q ss_pred HHHhhCCCeEEEEcCCcccc
Q 005815 300 NKAKANSPCLVFIDEIDAVG 319 (676)
Q Consensus 300 ~~A~~~~P~ILfIDEID~l~ 319 (676)
..|....|.+|+.||..+..
T Consensus 121 ARALal~P~liV~DEpvSaL 140 (268)
T COG4608 121 ARALALNPKLIVADEPVSAL 140 (268)
T ss_pred HHHHhhCCcEEEecCchhhc
Confidence 77888899999999998875
No 494
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.80 E-value=0.0071 Score=59.18 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=54.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH-----HHHHh------------hhhhHHHHHHHHHHhhCCCeEEEE
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF-----IEMFV------------GVGASRVRDLFNKAKANSPCLVFI 312 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~-----~~~~~------------g~~~~~vr~lF~~A~~~~P~ILfI 312 (676)
+|+.|++|+|||++|..++...+.+++++....- .+... .+....+.+.+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887778888754422 11100 01112233333222 24679999
Q ss_pred cCCccccccCCCCCCCC-ChHHHHHHHHHHHHhc
Q 005815 313 DEIDAVGRQRGTGIGGG-NDEREQTLNQLLTEMD 345 (676)
Q Consensus 313 DEID~l~~~r~~~~~~~-~~~~~~~l~~LL~~ld 345 (676)
|-+..+..+--...... .......+..|+..+.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH
Confidence 99988865432210000 0122345555666664
No 495
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.011 Score=65.02 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=43.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHH----HH---H---------hhhhhHHHHHHHHHHhh-CC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFI----EM---F---------VGVGASRVRDLFNKAKA-NS 306 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~----~~---~---------~g~~~~~vr~lF~~A~~-~~ 306 (676)
|+-++|.||+|+||||++..+|..+ +..+..+++..+. +. | .......+.+.+..++. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 5679999999999999999999866 4445555543221 11 1 01233445555555543 23
Q ss_pred CeEEEEcCCcc
Q 005815 307 PCLVFIDEIDA 317 (676)
Q Consensus 307 P~ILfIDEID~ 317 (676)
-.+||||-.-.
T Consensus 321 ~DvVLIDTaGR 331 (436)
T PRK11889 321 VDYILIDTAGK 331 (436)
T ss_pred CCEEEEeCccc
Confidence 46888887533
No 496
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.0025 Score=69.76 Aligned_cols=22 Identities=45% Similarity=0.865 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|.||+|+|||+|.+.+|+..
T Consensus 33 ~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 33 IVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EEEECCCCCcHHHHHHHHHCCC
Confidence 7899999999999999999964
No 497
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.78 E-value=0.0043 Score=66.27 Aligned_cols=30 Identities=33% Similarity=0.647 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....++.| +.|.||+|+|||||++.+++..
T Consensus 23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 23 LSFTIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444 8999999999999999999854
No 498
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.77 E-value=0.0054 Score=63.31 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=23.4
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.....+| +.|.||+|+|||+|++.+++..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444 8899999999999999999864
No 499
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0024 Score=66.94 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=25.6
Q ss_pred hhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 240 AAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 240 ~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
......++.| +.|.||+|+|||||++.+++..
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3444455555 8899999999999999999975
No 500
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.77 E-value=0.0012 Score=62.66 Aligned_cols=33 Identities=33% Similarity=0.763 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
++|+|+||+|||++|+.++...+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
Done!