Query 005815
Match_columns 676
No_of_seqs 592 out of 3697
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 6.3E-85 2.1E-89 728.0 47.3 450 203-656 4-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 2.5E-83 8.6E-88 718.9 43.7 463 188-659 6-471 (499)
3 4b4t_J 26S protease regulatory 100.0 1.8E-52 6.2E-57 454.2 28.4 260 201-460 135-395 (405)
4 4b4t_I 26S protease regulatory 100.0 6.3E-53 2.2E-57 459.0 19.9 300 159-459 128-428 (437)
5 4b4t_H 26S protease regulatory 100.0 6E-51 2E-55 447.4 28.3 264 198-461 193-457 (467)
6 4b4t_L 26S protease subunit RP 100.0 7.1E-50 2.4E-54 439.9 29.8 257 201-457 168-425 (437)
7 4b4t_M 26S protease regulatory 100.0 2.8E-50 9.7E-55 442.7 25.5 257 201-457 168-425 (434)
8 4b4t_K 26S protease regulatory 100.0 3.8E-49 1.3E-53 433.5 29.5 256 201-456 159-416 (428)
9 2di4_A Zinc protease, cell div 100.0 1.5E-48 5.3E-53 395.0 17.3 201 456-659 2-204 (238)
10 3cf2_A TER ATPase, transitiona 100.0 7.5E-44 2.6E-48 416.8 9.7 231 207-437 470-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 3E-41 1E-45 394.8 25.5 247 207-456 197-461 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 5.8E-39 2E-43 329.9 27.1 255 204-458 2-256 (257)
13 3cf0_A Transitional endoplasmi 100.0 2.5E-37 8.4E-42 326.3 25.1 248 207-454 8-281 (301)
14 2x8a_A Nuclear valosin-contain 100.0 1.9E-37 6.6E-42 323.3 20.9 246 208-456 4-266 (274)
15 3h4m_A Proteasome-activating n 100.0 2.7E-36 9.2E-41 314.0 27.2 254 204-457 7-261 (285)
16 1ixz_A ATP-dependent metallopr 100.0 1.4E-35 4.7E-40 304.2 28.7 246 206-451 8-253 (254)
17 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.9E-36 6.4E-41 310.5 20.7 252 209-460 1-255 (262)
18 1iy2_A ATP-dependent metallopr 100.0 9.9E-35 3.4E-39 302.4 28.5 258 193-451 20-277 (278)
19 3eie_A Vacuolar protein sortin 100.0 2.5E-35 8.4E-40 313.8 21.4 229 204-438 8-239 (322)
20 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.4E-35 1.8E-39 311.6 23.9 225 207-437 5-233 (322)
21 2qp9_X Vacuolar protein sortin 100.0 5E-34 1.7E-38 308.1 24.4 227 205-437 42-271 (355)
22 3hu3_A Transitional endoplasmi 100.0 1.8E-33 6.1E-38 315.5 27.4 244 209-455 199-460 (489)
23 2r62_A Cell division protease 100.0 2.4E-36 8.3E-41 311.8 2.4 249 207-455 4-254 (268)
24 2zan_A Vacuolar protein sortin 100.0 1.2E-32 4.1E-37 305.8 22.2 227 205-437 125-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 9.2E-31 3.1E-35 282.7 24.8 244 207-456 77-336 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 5.1E-31 1.7E-35 276.0 21.0 244 205-454 12-272 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 3.4E-30 1.2E-34 281.1 23.5 245 204-454 105-365 (389)
28 1ypw_A Transitional endoplasmi 100.0 2.6E-33 9E-38 331.8 -4.1 233 206-438 469-702 (806)
29 3t15_A Ribulose bisphosphate c 100.0 1.6E-30 5.6E-35 273.3 10.1 229 242-484 31-281 (293)
30 1ypw_A Transitional endoplasmi 100.0 2.2E-27 7.6E-32 281.1 23.8 245 207-454 197-459 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.4E-25 4.8E-30 249.8 -0.2 205 208-429 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 2.8E-22 9.7E-27 210.3 16.6 224 213-448 29-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 5.9E-22 2E-26 213.0 16.5 253 209-488 39-363 (368)
34 3pfi_A Holliday junction ATP-d 99.9 2.1E-20 7.2E-25 198.9 23.8 221 202-454 17-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 5.9E-20 2E-24 193.7 19.7 221 206-454 4-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 7.5E-20 2.6E-24 191.1 14.8 235 214-453 15-298 (310)
37 1d2n_A N-ethylmaleimide-sensit 99.8 2E-19 6.7E-24 186.0 16.2 224 213-452 32-262 (272)
38 3m6a_A ATP-dependent protease 99.8 1E-19 3.6E-24 206.7 11.2 223 210-453 77-340 (543)
39 2z4s_A Chromosomal replication 99.8 1.3E-18 4.3E-23 192.9 19.1 222 208-455 99-333 (440)
40 3hws_A ATP-dependent CLP prote 99.8 7.7E-19 2.6E-23 189.4 16.3 221 216-438 17-326 (363)
41 3u61_B DNA polymerase accessor 99.8 1.7E-18 5.8E-23 183.2 17.5 209 201-452 13-235 (324)
42 1g41_A Heat shock protein HSLU 99.8 5.2E-20 1.8E-24 202.8 5.4 170 214-395 15-190 (444)
43 2v1u_A Cell division control p 99.8 3.3E-18 1.1E-22 183.5 18.6 224 211-455 16-277 (387)
44 1l8q_A Chromosomal replication 99.8 8.1E-18 2.8E-22 178.2 19.8 219 208-455 5-241 (324)
45 2chg_A Replication factor C sm 99.8 1.4E-17 4.6E-22 163.8 19.6 207 203-452 6-224 (226)
46 1sxj_A Activator 1 95 kDa subu 99.8 3.2E-18 1.1E-22 193.3 15.1 233 198-454 23-274 (516)
47 3pvs_A Replication-associated 99.8 5.6E-18 1.9E-22 187.9 15.9 207 206-453 18-243 (447)
48 1njg_A DNA polymerase III subu 99.7 6.8E-17 2.3E-21 160.4 20.2 208 203-451 12-248 (250)
49 3bos_A Putative DNA replicatio 99.7 2.8E-17 9.4E-22 164.5 16.5 209 209-452 23-241 (242)
50 1in4_A RUVB, holliday junction 99.7 2E-16 6.8E-21 168.9 24.1 218 205-454 16-250 (334)
51 2r44_A Uncharacterized protein 99.7 2.8E-17 9.4E-22 174.5 17.1 214 211-457 24-300 (331)
52 2qby_B CDC6 homolog 3, cell di 99.7 5.2E-17 1.8E-21 174.8 19.0 212 213-455 19-271 (384)
53 1g8p_A Magnesium-chelatase 38 99.7 7.2E-17 2.5E-21 171.7 19.4 219 208-457 18-325 (350)
54 1um8_A ATP-dependent CLP prote 99.7 2.6E-17 8.8E-22 178.2 15.5 233 215-450 22-361 (376)
55 2qby_A CDC6 homolog 1, cell di 99.7 1.9E-16 6.4E-21 169.6 20.1 223 210-455 16-273 (386)
56 1sxj_D Activator 1 41 kDa subu 99.7 1.4E-16 4.8E-21 169.5 18.6 214 201-452 24-261 (353)
57 1jbk_A CLPB protein; beta barr 99.7 5.1E-17 1.7E-21 155.9 10.5 160 209-393 17-194 (195)
58 2chq_A Replication factor C sm 99.7 1.9E-16 6.3E-21 165.8 15.4 207 202-451 5-223 (319)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 5.2E-16 1.8E-20 182.9 20.0 223 208-455 180-434 (758)
60 4fcw_A Chaperone protein CLPB; 99.7 2.4E-16 8.3E-21 165.0 14.7 203 214-435 17-279 (311)
61 1fnn_A CDC6P, cell division co 99.7 1.5E-15 5.2E-20 163.3 20.2 220 211-455 14-275 (389)
62 3pxg_A Negative regulator of g 99.7 2.5E-16 8.4E-21 175.8 13.8 209 206-454 172-406 (468)
63 1jr3_A DNA polymerase III subu 99.7 2.2E-15 7.4E-20 161.5 19.3 207 204-451 6-241 (373)
64 1sxj_B Activator 1 37 kDa subu 99.7 2.5E-15 8.7E-20 157.4 19.1 206 203-451 10-228 (323)
65 1iqp_A RFCS; clamp loader, ext 99.6 4.1E-15 1.4E-19 156.1 19.6 207 202-451 13-231 (327)
66 3pxi_A Negative regulator of g 99.6 1.6E-15 5.4E-20 178.9 15.8 197 214-434 491-724 (758)
67 3te6_A Regulatory protein SIR3 99.6 9.9E-16 3.4E-20 162.2 12.0 138 245-399 43-213 (318)
68 3pxi_A Negative regulator of g 99.6 1.8E-15 6E-20 178.5 15.2 192 207-438 173-389 (758)
69 1qvr_A CLPB protein; coiled co 99.6 3.3E-15 1.1E-19 178.3 17.4 205 207-437 163-395 (854)
70 2bjv_A PSP operon transcriptio 99.6 4.2E-15 1.4E-19 152.7 15.2 204 211-448 3-251 (265)
71 1r6b_X CLPA protein; AAA+, N-t 99.6 2.6E-15 8.8E-20 177.0 14.9 194 214-433 458-714 (758)
72 2p65_A Hypothetical protein PF 99.6 1.8E-15 6.1E-20 145.0 11.0 155 207-385 15-187 (187)
73 1sxj_E Activator 1 40 kDa subu 99.6 8.2E-15 2.8E-19 156.3 15.5 195 203-432 3-242 (354)
74 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.8E-15 1.3E-19 167.0 12.5 208 214-453 22-284 (500)
75 1sxj_C Activator 1 40 kDa subu 99.6 2.2E-14 7.4E-19 153.1 17.2 211 202-451 13-236 (340)
76 1ojl_A Transcriptional regulat 99.6 3.1E-15 1.1E-19 157.7 10.0 202 214-449 2-247 (304)
77 3f9v_A Minichromosome maintena 99.5 1.6E-15 5.3E-20 174.0 2.5 219 214-455 295-588 (595)
78 1qvr_A CLPB protein; coiled co 99.5 3E-14 1E-18 170.1 12.3 199 213-434 557-819 (854)
79 1w5s_A Origin recognition comp 99.5 1.6E-12 5.4E-17 140.9 21.0 228 211-455 19-294 (412)
80 3co5_A Putative two-component 99.4 2.5E-13 8.6E-18 127.0 7.3 112 215-362 5-116 (143)
81 3k1j_A LON protease, ATP-depen 99.4 4.5E-12 1.5E-16 145.7 19.3 220 206-453 33-374 (604)
82 3cmw_A Protein RECA, recombina 99.4 6.5E-13 2.2E-17 165.5 8.9 153 209-362 1015-1218(1706)
83 3n70_A Transport activator; si 99.3 2E-12 6.9E-17 121.0 9.6 112 215-362 2-116 (145)
84 1a5t_A Delta prime, HOLB; zinc 99.3 2.1E-11 7.3E-16 129.8 18.2 159 245-430 22-208 (334)
85 3kw6_A 26S protease regulatory 99.3 7.5E-12 2.6E-16 105.1 9.6 75 382-456 1-75 (78)
86 2krk_A 26S protease regulatory 99.3 8.1E-12 2.8E-16 107.0 9.0 77 381-457 8-84 (86)
87 3vlf_B 26S protease regulatory 99.2 1.9E-11 6.5E-16 105.2 8.6 78 385-462 2-79 (88)
88 1ny5_A Transcriptional regulat 99.2 3.7E-11 1.3E-15 130.7 11.5 208 213-451 136-384 (387)
89 3ec2_A DNA replication protein 99.2 5.9E-11 2E-15 114.5 11.0 135 207-362 3-143 (180)
90 2gno_A DNA polymerase III, gam 99.2 1.4E-10 4.8E-15 122.2 14.1 142 218-397 1-152 (305)
91 4akg_A Glutathione S-transfera 99.1 2.2E-10 7.4E-15 148.7 13.1 138 247-399 1267-1433(2695)
92 3aji_B S6C, proteasome (prosom 99.0 3.5E-10 1.2E-14 95.9 7.3 73 385-457 2-74 (83)
93 2w58_A DNAI, primosome compone 99.0 8.5E-10 2.9E-14 108.1 9.2 104 209-319 20-128 (202)
94 2dzn_B 26S protease regulatory 98.9 2.8E-10 9.5E-15 96.5 2.2 73 387-459 1-73 (82)
95 2fna_A Conserved hypothetical 98.9 6.5E-08 2.2E-12 101.8 20.0 191 208-429 7-252 (357)
96 3f8t_A Predicted ATPase involv 98.9 2E-08 6.8E-13 110.6 14.6 209 216-455 215-484 (506)
97 3dzd_A Transcriptional regulat 98.9 4.6E-09 1.6E-13 113.5 9.5 193 214-434 129-361 (368)
98 2qen_A Walker-type ATPase; unk 98.8 2.5E-07 8.5E-12 97.2 22.3 193 209-428 7-247 (350)
99 2kjq_A DNAA-related protein; s 98.8 3.9E-09 1.3E-13 99.4 6.8 103 247-380 36-144 (149)
100 2vhj_A Ntpase P4, P4; non- hyd 98.7 2.2E-09 7.6E-14 113.2 2.2 117 248-369 124-242 (331)
101 2qgz_A Helicase loader, putati 98.7 1.1E-08 3.7E-13 107.9 7.3 101 210-318 120-226 (308)
102 2r2a_A Uncharacterized protein 98.6 4E-08 1.4E-12 97.1 5.3 129 247-388 5-157 (199)
103 4akg_A Glutathione S-transfera 98.5 1.2E-06 4.1E-11 114.2 19.8 167 247-435 645-841 (2695)
104 1svm_A Large T antigen; AAA+ f 98.5 5.9E-08 2E-12 105.0 6.6 119 243-383 165-284 (377)
105 3cmu_A Protein RECA, recombina 98.5 2.8E-07 9.6E-12 116.5 11.8 118 243-360 1423-1562(2050)
106 1jr3_D DNA polymerase III, del 98.2 7.7E-06 2.6E-10 86.7 13.8 179 245-454 16-209 (343)
107 2c9o_A RUVB-like 1; hexameric 98.2 4.8E-06 1.6E-10 92.2 10.7 127 307-454 296-437 (456)
108 1tue_A Replication protein E1; 98.1 8.4E-07 2.9E-11 87.7 3.1 30 247-276 58-87 (212)
109 3vkg_A Dynein heavy chain, cyt 98.1 7.8E-06 2.7E-10 107.4 12.6 137 247-397 1304-1469(3245)
110 1ye8_A Protein THEP1, hypothet 98.1 1.1E-05 3.9E-10 77.9 9.7 28 249-276 2-29 (178)
111 2cvh_A DNA repair and recombin 97.9 1.6E-05 5.4E-10 78.0 7.6 36 247-282 20-55 (220)
112 2w0m_A SSO2452; RECA, SSPF, un 97.9 2.2E-05 7.7E-10 77.2 8.4 34 247-280 23-59 (235)
113 1u0j_A DNA replication protein 97.9 1.8E-05 6.1E-10 81.4 7.7 27 247-273 104-130 (267)
114 1n0w_A DNA repair protein RAD5 97.9 3.2E-05 1.1E-09 77.0 8.8 118 245-363 22-175 (243)
115 3vkg_A Dynein heavy chain, cyt 97.8 5.8E-05 2E-09 99.3 13.3 126 248-394 605-750 (3245)
116 2ehv_A Hypothetical protein PH 97.8 7.2E-05 2.5E-09 74.7 10.9 110 247-365 30-185 (251)
117 1z6t_A APAF-1, apoptotic prote 97.8 0.00031 1.1E-08 79.6 16.2 178 210-426 120-327 (591)
118 1xp8_A RECA protein, recombina 97.8 6.2E-05 2.1E-09 81.0 9.8 117 244-360 71-209 (366)
119 2zr9_A Protein RECA, recombina 97.8 2.6E-05 8.8E-10 83.5 6.6 76 245-320 59-153 (349)
120 3upu_A ATP-dependent DNA helic 97.7 8.8E-05 3E-09 82.1 11.0 69 201-281 11-83 (459)
121 3hr8_A Protein RECA; alpha and 97.7 4.7E-05 1.6E-09 81.6 8.4 112 248-359 62-195 (356)
122 2z43_A DNA repair and recombin 97.7 4.6E-05 1.6E-09 80.4 8.0 116 244-360 104-256 (324)
123 4a74_A DNA repair and recombin 97.7 5.6E-05 1.9E-09 74.5 7.2 24 248-271 26-49 (231)
124 3cmu_A Protein RECA, recombina 97.6 7.7E-05 2.6E-09 94.7 9.2 123 243-365 728-872 (2050)
125 3sfz_A APAF-1, apoptotic pepti 97.6 0.00092 3.2E-08 81.8 18.6 172 210-420 120-322 (1249)
126 1qhx_A CPT, protein (chloramph 97.6 0.00016 5.6E-09 68.4 9.1 40 247-286 3-42 (178)
127 1u94_A RECA protein, recombina 97.6 0.00012 4E-09 78.5 8.8 117 244-360 60-198 (356)
128 1pzn_A RAD51, DNA repair and r 97.6 0.00011 3.7E-09 78.5 8.3 114 249-363 133-287 (349)
129 1v5w_A DMC1, meiotic recombina 97.6 0.00013 4.3E-09 77.8 8.3 112 249-361 124-273 (343)
130 3lda_A DNA repair protein RAD5 97.5 0.0001 3.5E-09 80.2 7.2 118 243-361 174-327 (400)
131 4gp7_A Metallophosphoesterase; 97.4 5.4E-05 1.8E-09 72.2 3.0 69 296-365 91-162 (171)
132 1g41_A Heat shock protein HSLU 97.4 0.0014 4.8E-08 72.1 14.0 152 294-451 240-430 (444)
133 2dr3_A UPF0273 protein PH0284; 97.4 0.00056 1.9E-08 67.9 9.9 38 244-281 20-60 (247)
134 3io5_A Recombination and repai 97.3 0.00032 1.1E-08 73.7 7.9 113 247-359 27-169 (333)
135 2i1q_A DNA repair and recombin 97.3 0.00018 6.1E-09 75.6 6.0 113 247-360 98-257 (322)
136 3cmw_A Protein RECA, recombina 97.3 0.00014 4.9E-09 91.3 5.9 78 243-320 728-824 (1706)
137 2a5y_B CED-4; apoptosis; HET: 97.3 0.0031 1.1E-07 71.2 16.2 166 217-419 131-330 (549)
138 1nlf_A Regulatory protein REPA 97.3 0.00038 1.3E-08 71.5 8.0 24 248-271 31-54 (279)
139 2r8r_A Sensor protein; KDPD, P 97.3 0.004 1.4E-07 62.3 14.9 161 249-435 8-209 (228)
140 1gvn_B Zeta; postsegregational 97.3 0.00055 1.9E-08 71.0 8.9 60 220-283 10-69 (287)
141 2orw_A Thymidine kinase; TMTK, 97.2 0.00015 5E-09 70.3 3.8 30 249-278 5-37 (184)
142 2b8t_A Thymidine kinase; deoxy 97.2 0.00022 7.4E-09 71.5 5.0 69 250-318 15-101 (223)
143 2zts_A Putative uncharacterize 97.2 0.00055 1.9E-08 68.1 7.7 38 244-281 27-68 (251)
144 3vaa_A Shikimate kinase, SK; s 97.2 0.00067 2.3E-08 65.9 7.8 32 247-278 25-56 (199)
145 2eyu_A Twitching motility prot 97.2 0.00025 8.4E-09 72.7 4.6 67 249-316 27-108 (261)
146 3trf_A Shikimate kinase, SK; a 97.2 0.00021 7.1E-09 68.3 3.8 38 247-286 5-42 (185)
147 2p5t_B PEZT; postsegregational 97.2 0.00086 2.9E-08 67.9 8.5 39 245-283 30-68 (253)
148 2cbz_A Multidrug resistance-as 97.1 0.00063 2.2E-08 68.6 7.0 29 243-271 25-55 (237)
149 1cr0_A DNA primase/helicase; R 97.1 0.00055 1.9E-08 70.8 6.7 34 247-280 35-72 (296)
150 3jvv_A Twitching mobility prot 97.1 0.00054 1.9E-08 73.4 6.8 95 250-365 126-234 (356)
151 2r6a_A DNAB helicase, replicat 97.1 0.00088 3E-08 74.0 8.6 38 243-280 199-240 (454)
152 3tui_C Methionine import ATP-b 97.1 0.00035 1.2E-08 75.0 4.6 57 295-364 170-226 (366)
153 3nh6_A ATP-binding cassette SU 97.0 0.00022 7.6E-09 74.8 3.0 31 241-271 72-104 (306)
154 3gfo_A Cobalt import ATP-bindi 97.0 0.00048 1.6E-08 71.2 5.3 57 296-365 151-207 (275)
155 2rhm_A Putative kinase; P-loop 97.0 0.00044 1.5E-08 66.2 4.7 32 246-277 4-35 (193)
156 3tif_A Uncharacterized ABC tra 97.0 0.00034 1.2E-08 70.5 4.0 55 296-363 153-207 (235)
157 2ixe_A Antigen peptide transpo 97.0 0.001 3.6E-08 68.4 7.7 56 296-364 164-219 (271)
158 4g1u_C Hemin import ATP-bindin 97.0 0.00095 3.2E-08 68.5 7.0 57 295-364 148-210 (266)
159 1zp6_A Hypothetical protein AT 97.0 0.00054 1.9E-08 65.6 4.8 37 248-284 10-46 (191)
160 1vpl_A ABC transporter, ATP-bi 96.9 0.00071 2.4E-08 69.1 5.6 29 243-271 35-65 (256)
161 2ff7_A Alpha-hemolysin translo 96.9 0.00087 3E-08 68.0 6.2 54 296-364 153-206 (247)
162 3kb2_A SPBC2 prophage-derived 96.9 0.00049 1.7E-08 64.4 4.0 31 249-279 3-33 (173)
163 2olj_A Amino acid ABC transpor 96.9 0.00098 3.4E-08 68.3 6.5 30 242-271 43-74 (263)
164 2q6t_A DNAB replication FORK h 96.9 0.0017 5.9E-08 71.4 8.8 39 243-281 196-238 (444)
165 2nq2_C Hypothetical ABC transp 96.9 0.00084 2.9E-08 68.4 5.7 56 296-364 136-191 (253)
166 2ewv_A Twitching motility prot 96.9 0.0013 4.5E-08 70.7 7.6 69 248-316 137-219 (372)
167 2iyv_A Shikimate kinase, SK; t 96.9 0.0005 1.7E-08 65.6 3.5 35 249-285 4-38 (184)
168 2ghi_A Transport protein; mult 96.9 0.0021 7.1E-08 65.7 8.4 30 242-271 39-70 (260)
169 3iij_A Coilin-interacting nucl 96.9 0.00055 1.9E-08 65.1 3.7 32 247-278 11-42 (180)
170 2pcj_A ABC transporter, lipopr 96.9 0.0012 4.2E-08 65.8 6.4 29 243-271 24-54 (224)
171 3bh0_A DNAB-like replicative h 96.9 0.004 1.4E-07 65.3 10.5 38 243-280 64-104 (315)
172 1kag_A SKI, shikimate kinase I 96.8 0.00072 2.5E-08 63.6 4.4 35 248-284 5-39 (173)
173 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0018 6.2E-08 65.8 7.6 38 248-285 5-45 (260)
174 1via_A Shikimate kinase; struc 96.8 0.00063 2.2E-08 64.5 3.9 34 249-284 6-39 (175)
175 1ji0_A ABC transporter; ATP bi 96.8 0.00038 1.3E-08 70.3 2.2 29 243-271 26-56 (240)
176 1y63_A LMAJ004144AAA protein; 96.8 0.00064 2.2E-08 65.2 3.4 30 248-277 11-41 (184)
177 1s96_A Guanylate kinase, GMP k 96.8 0.0028 9.5E-08 63.1 8.1 24 249-272 18-41 (219)
178 3rlf_A Maltose/maltodextrin im 96.8 0.00054 1.8E-08 74.0 3.1 29 243-271 23-53 (381)
179 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00051 1.8E-08 72.8 2.8 70 248-317 172-251 (330)
180 2ze6_A Isopentenyl transferase 96.7 0.00081 2.8E-08 68.3 4.1 33 249-281 3-35 (253)
181 2cdn_A Adenylate kinase; phosp 96.7 0.0013 4.3E-08 63.8 5.3 33 246-278 19-51 (201)
182 2iut_A DNA translocase FTSK; n 96.7 0.01 3.5E-07 67.0 13.3 74 308-394 345-420 (574)
183 3e1s_A Exodeoxyribonuclease V, 96.7 0.0015 5E-08 74.4 6.6 96 248-360 205-316 (574)
184 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.7E-08 62.3 4.6 31 248-278 8-38 (168)
185 2it1_A 362AA long hypothetical 96.7 0.00097 3.3E-08 71.5 4.7 29 243-271 23-53 (362)
186 3b5x_A Lipid A export ATP-bind 96.7 0.004 1.4E-07 70.8 10.1 33 239-271 359-393 (582)
187 1v43_A Sugar-binding transport 96.7 0.00088 3E-08 72.1 4.4 30 242-271 30-61 (372)
188 3fvq_A Fe(3+) IONS import ATP- 96.7 0.0011 3.7E-08 71.0 4.9 30 242-271 23-54 (359)
189 3lw7_A Adenylate kinase relate 96.7 0.00069 2.4E-08 63.1 2.9 29 249-278 3-31 (179)
190 2yyz_A Sugar ABC transporter, 96.7 0.001 3.6E-08 71.2 4.6 30 242-271 22-53 (359)
191 2fz4_A DNA repair protein RAD2 96.7 0.0069 2.4E-07 60.7 10.4 37 249-285 110-147 (237)
192 1qf9_A UMP/CMP kinase, protein 96.7 0.0011 3.7E-08 63.1 4.3 38 246-285 5-42 (194)
193 1ly1_A Polynucleotide kinase; 96.7 0.00083 2.9E-08 63.3 3.3 35 247-283 2-37 (181)
194 1tev_A UMP-CMP kinase; ploop, 96.7 0.0011 3.6E-08 63.3 4.0 37 247-285 3-39 (196)
195 1tf7_A KAIC; homohexamer, hexa 96.7 0.0057 2E-07 68.7 10.6 104 249-362 283-417 (525)
196 1g6h_A High-affinity branched- 96.7 0.0026 8.9E-08 64.8 7.2 31 241-271 25-57 (257)
197 3t61_A Gluconokinase; PSI-biol 96.6 0.0013 4.5E-08 63.8 4.7 31 247-277 18-48 (202)
198 2i3b_A HCR-ntpase, human cance 96.6 0.002 7E-08 62.6 6.0 22 250-271 4-25 (189)
199 3qf4_A ABC transporter, ATP-bi 96.6 0.0013 4.3E-08 75.2 5.1 56 294-364 485-540 (587)
200 3qf4_B Uncharacterized ABC tra 96.6 0.0022 7.4E-08 73.4 6.9 58 293-365 496-553 (598)
201 1vma_A Cell division protein F 96.6 0.0055 1.9E-07 64.2 9.4 72 245-316 102-196 (306)
202 4a82_A Cystic fibrosis transme 96.6 0.0019 6.4E-08 73.6 6.3 32 240-271 358-391 (578)
203 1e6c_A Shikimate kinase; phosp 96.6 0.0012 4.2E-08 61.9 3.9 30 248-277 3-32 (173)
204 2vli_A Antibiotic resistance p 96.6 0.0011 3.7E-08 62.9 3.5 30 247-276 5-34 (183)
205 1mv5_A LMRA, multidrug resista 96.6 0.00073 2.5E-08 68.3 2.3 29 243-271 22-52 (243)
206 2pez_A Bifunctional 3'-phospho 96.6 0.0019 6.6E-08 61.3 5.2 36 248-283 6-44 (179)
207 1b0u_A Histidine permease; ABC 96.6 0.0019 6.4E-08 66.1 5.3 30 242-271 25-56 (262)
208 1ex7_A Guanylate kinase; subst 96.5 0.0026 8.8E-08 61.8 5.9 24 248-271 2-25 (186)
209 2c95_A Adenylate kinase 1; tra 96.5 0.0016 5.4E-08 62.4 4.4 37 247-285 9-45 (196)
210 3d31_A Sulfate/molybdate ABC t 96.5 0.0012 4.1E-08 70.4 3.9 29 243-271 20-50 (348)
211 2pze_A Cystic fibrosis transme 96.5 0.0015 5.3E-08 65.3 4.4 28 244-271 29-58 (229)
212 1aky_A Adenylate kinase; ATP:A 96.5 0.0017 5.7E-08 64.0 4.5 37 247-285 4-40 (220)
213 3dl0_A Adenylate kinase; phosp 96.5 0.0016 5.4E-08 63.8 4.3 29 250-278 3-31 (216)
214 3cm0_A Adenylate kinase; ATP-b 96.5 0.0013 4.6E-08 62.5 3.7 34 249-284 6-39 (186)
215 3fb4_A Adenylate kinase; psych 96.5 0.0017 5.8E-08 63.5 4.3 29 250-278 3-31 (216)
216 1z47_A CYSA, putative ABC-tran 96.5 0.0022 7.6E-08 68.5 5.5 22 250-271 44-65 (355)
217 2pt5_A Shikimate kinase, SK; a 96.5 0.0018 6.2E-08 60.5 4.3 29 249-277 2-30 (168)
218 2bwj_A Adenylate kinase 5; pho 96.5 0.0017 5.8E-08 62.3 4.1 37 247-285 12-48 (199)
219 1zd8_A GTP:AMP phosphotransfer 96.5 0.0017 5.8E-08 64.3 4.2 37 247-285 7-43 (227)
220 2qi9_C Vitamin B12 import ATP- 96.5 0.0013 4.5E-08 66.8 3.4 29 243-271 20-50 (249)
221 1tf7_A KAIC; homohexamer, hexa 96.5 0.0095 3.3E-07 66.9 10.7 109 248-365 40-188 (525)
222 4eun_A Thermoresistant glucoki 96.4 0.002 6.8E-08 62.6 4.5 35 247-283 29-63 (200)
223 1kht_A Adenylate kinase; phosp 96.4 0.0015 5.3E-08 62.0 3.6 25 248-272 4-28 (192)
224 3be4_A Adenylate kinase; malar 96.4 0.0017 5.9E-08 63.9 4.1 36 248-285 6-41 (217)
225 2ius_A DNA translocase FTSK; n 96.4 0.009 3.1E-07 66.8 10.3 76 306-394 296-374 (512)
226 2onk_A Molybdate/tungstate ABC 96.4 0.0018 6E-08 65.5 4.0 24 248-271 25-48 (240)
227 1knq_A Gluconate kinase; ALFA/ 96.4 0.0018 6.3E-08 61.1 3.9 33 249-283 10-42 (175)
228 3gd7_A Fusion complex of cysti 96.4 0.004 1.4E-07 67.4 7.0 29 242-270 40-70 (390)
229 1g29_1 MALK, maltose transport 96.4 0.0029 9.8E-08 68.1 5.8 22 250-271 32-53 (372)
230 1nks_A Adenylate kinase; therm 96.4 0.0026 9E-08 60.4 5.0 36 249-284 3-41 (194)
231 1ukz_A Uridylate kinase; trans 96.4 0.0015 5.2E-08 63.2 3.3 37 247-285 15-51 (203)
232 2d2e_A SUFC protein; ABC-ATPas 96.4 0.0025 8.4E-08 64.7 4.9 28 243-270 23-52 (250)
233 4f4c_A Multidrug resistance pr 96.4 0.0016 5.6E-08 81.0 4.3 32 240-271 435-468 (1321)
234 1ak2_A Adenylate kinase isoenz 96.4 0.0023 7.8E-08 63.8 4.6 36 248-285 17-52 (233)
235 3umf_A Adenylate kinase; rossm 96.4 0.0018 6.3E-08 64.4 3.8 40 245-286 27-66 (217)
236 1oxx_K GLCV, glucose, ABC tran 96.4 0.001 3.5E-08 71.2 2.1 30 242-271 24-55 (353)
237 3tlx_A Adenylate kinase 2; str 96.4 0.0016 5.4E-08 65.7 3.3 38 246-285 28-65 (243)
238 1jjv_A Dephospho-COA kinase; P 96.4 0.0035 1.2E-07 60.8 5.7 33 249-284 4-36 (206)
239 3thx_B DNA mismatch repair pro 96.3 0.0085 2.9E-07 71.6 9.9 107 248-366 674-800 (918)
240 1g5t_A COB(I)alamin adenosyltr 96.3 0.015 5.2E-07 56.8 10.0 116 249-382 30-178 (196)
241 1zak_A Adenylate kinase; ATP:A 96.3 0.0019 6.4E-08 63.7 3.4 36 247-284 5-40 (222)
242 3b60_A Lipid A export ATP-bind 96.3 0.0044 1.5E-07 70.5 6.9 32 240-271 360-393 (582)
243 3dm5_A SRP54, signal recogniti 96.3 0.027 9.1E-07 61.9 12.7 71 247-317 100-193 (443)
244 2pbr_A DTMP kinase, thymidylat 96.3 0.0031 1.1E-07 60.0 4.7 30 250-279 3-35 (195)
245 3crm_A TRNA delta(2)-isopenten 96.2 0.0025 8.5E-08 67.2 4.0 36 247-282 5-40 (323)
246 3uie_A Adenylyl-sulfate kinase 96.2 0.0041 1.4E-07 60.3 5.3 37 247-283 25-64 (200)
247 3sr0_A Adenylate kinase; phosp 96.2 0.0027 9.2E-08 62.6 3.9 34 250-285 3-36 (206)
248 3kl4_A SRP54, signal recogniti 96.2 0.024 8.4E-07 62.0 11.9 72 247-318 97-191 (433)
249 1q57_A DNA primase/helicase; d 96.2 0.01 3.4E-07 66.2 9.0 39 243-281 238-280 (503)
250 1e4v_A Adenylate kinase; trans 96.2 0.0029 1E-07 62.0 4.1 29 250-278 3-31 (214)
251 1cke_A CK, MSSA, protein (cyti 96.2 0.0033 1.1E-07 61.8 4.3 35 248-284 6-40 (227)
252 2px0_A Flagellar biosynthesis 96.1 0.016 5.4E-07 60.3 9.6 35 247-281 105-143 (296)
253 2if2_A Dephospho-COA kinase; a 96.1 0.0022 7.6E-08 62.1 2.8 34 249-285 3-36 (204)
254 2jaq_A Deoxyguanosine kinase; 96.1 0.0031 1.1E-07 60.5 3.7 28 250-277 3-30 (205)
255 3bgw_A DNAB-like replicative h 96.1 0.017 5.7E-07 63.6 9.8 39 243-281 193-234 (444)
256 2z0h_A DTMP kinase, thymidylat 96.1 0.0045 1.5E-07 59.2 4.6 30 250-279 3-35 (197)
257 2v54_A DTMP kinase, thymidylat 96.0 0.0042 1.4E-07 59.8 4.3 33 247-279 4-37 (204)
258 2pjz_A Hypothetical protein ST 96.0 0.028 9.6E-07 57.4 10.7 29 243-271 25-54 (263)
259 2xb4_A Adenylate kinase; ATP-b 96.0 0.0037 1.3E-07 61.9 3.9 34 250-285 3-36 (223)
260 3ake_A Cytidylate kinase; CMP 96.0 0.0054 1.8E-07 59.2 4.8 30 249-278 4-33 (208)
261 1vt4_I APAF-1 related killer D 96.0 0.017 5.9E-07 69.5 9.8 43 217-270 131-173 (1221)
262 4aby_A DNA repair protein RECN 95.9 0.01 3.6E-07 64.0 7.2 31 241-271 53-84 (415)
263 4f4c_A Multidrug resistance pr 95.9 0.0033 1.1E-07 78.3 3.5 58 293-365 1222-1279(1321)
264 3ozx_A RNAse L inhibitor; ATP 95.9 0.01 3.5E-07 67.0 7.2 59 293-364 390-448 (538)
265 2bbw_A Adenylate kinase 4, AK4 95.9 0.0054 1.8E-07 61.5 4.5 30 247-276 27-56 (246)
266 3thx_A DNA mismatch repair pro 95.9 0.018 6.1E-07 69.0 9.5 106 248-365 663-788 (934)
267 2grj_A Dephospho-COA kinase; T 95.8 0.012 4E-07 57.3 6.4 49 249-299 14-62 (192)
268 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0016 5.4E-08 69.5 0.2 30 249-278 26-55 (359)
269 3ney_A 55 kDa erythrocyte memb 95.8 0.011 3.7E-07 57.9 6.1 25 247-271 19-43 (197)
270 1uj2_A Uridine-cytidine kinase 95.8 0.007 2.4E-07 61.0 4.8 38 247-284 22-67 (252)
271 3tau_A Guanylate kinase, GMP k 95.8 0.0081 2.8E-07 58.7 5.1 25 248-272 9-33 (208)
272 1uf9_A TT1252 protein; P-loop, 95.8 0.0065 2.2E-07 58.3 4.4 36 247-285 8-43 (203)
273 3r20_A Cytidylate kinase; stru 95.8 0.0063 2.1E-07 61.2 4.4 35 247-283 9-43 (233)
274 2qor_A Guanylate kinase; phosp 95.8 0.0092 3.2E-07 58.0 5.5 27 246-272 11-37 (204)
275 4a1f_A DNAB helicase, replicat 95.8 0.023 7.8E-07 60.3 8.9 38 243-280 42-82 (338)
276 3j16_B RLI1P; ribosome recycli 95.8 0.0086 3E-07 68.5 6.0 102 250-364 381-530 (608)
277 3llm_A ATP-dependent RNA helic 95.7 0.057 1.9E-06 53.6 11.3 22 248-269 77-98 (235)
278 2yl4_A ATP-binding cassette SU 95.7 0.003 1E-07 72.1 2.1 33 239-271 360-394 (595)
279 2plr_A DTMP kinase, probable t 95.7 0.0085 2.9E-07 57.8 4.8 31 248-278 5-37 (213)
280 3b6e_A Interferon-induced heli 95.6 0.062 2.1E-06 51.6 10.9 24 248-271 49-72 (216)
281 3nwj_A ATSK2; P loop, shikimat 95.6 0.0063 2.2E-07 61.8 3.9 31 248-278 49-79 (250)
282 3ozx_A RNAse L inhibitor; ATP 95.6 0.018 6.3E-07 64.9 7.9 58 294-366 144-201 (538)
283 2wwf_A Thymidilate kinase, put 95.6 0.0035 1.2E-07 60.8 1.8 28 247-274 10-37 (212)
284 2yvu_A Probable adenylyl-sulfa 95.6 0.012 4.1E-07 56.1 5.5 36 248-283 14-52 (186)
285 1wb9_A DNA mismatch repair pro 95.6 0.044 1.5E-06 64.6 11.3 23 248-270 608-630 (800)
286 3c8u_A Fructokinase; YP_612366 95.6 0.011 3.9E-07 57.6 5.4 25 248-272 23-47 (208)
287 3g5u_A MCG1178, multidrug resi 95.5 0.0056 1.9E-07 76.0 3.6 57 294-365 532-588 (1284)
288 1w4r_A Thymidine kinase; type 95.5 0.009 3.1E-07 58.4 4.3 67 250-318 23-103 (195)
289 3bk7_A ABC transporter ATP-bin 95.5 0.022 7.6E-07 65.1 8.2 103 249-364 384-534 (607)
290 3gmt_A Adenylate kinase; ssgci 95.5 0.032 1.1E-06 55.9 8.1 34 250-285 11-44 (230)
291 1nn5_A Similar to deoxythymidy 95.5 0.0044 1.5E-07 60.1 1.8 26 247-272 9-34 (215)
292 3a8t_A Adenylate isopentenyltr 95.4 0.0065 2.2E-07 64.4 3.1 35 248-282 41-75 (339)
293 1kgd_A CASK, peripheral plasma 95.4 0.0093 3.2E-07 56.9 4.0 24 248-271 6-29 (180)
294 1m7g_A Adenylylsulfate kinase; 95.4 0.011 3.6E-07 57.8 4.5 38 247-284 25-66 (211)
295 3foz_A TRNA delta(2)-isopenten 95.4 0.0078 2.7E-07 63.0 3.6 37 246-282 9-45 (316)
296 1z6g_A Guanylate kinase; struc 95.3 0.0079 2.7E-07 59.4 3.3 33 239-271 13-47 (218)
297 1rz3_A Hypothetical protein rb 95.3 0.027 9.1E-07 54.6 7.0 35 248-282 23-60 (201)
298 2bdt_A BH3686; alpha-beta prot 95.3 0.013 4.6E-07 55.8 4.8 35 249-284 4-38 (189)
299 4e22_A Cytidylate kinase; P-lo 95.3 0.01 3.4E-07 60.0 4.0 28 249-276 29-56 (252)
300 3zvl_A Bifunctional polynucleo 95.3 0.014 4.8E-07 63.6 5.4 35 247-283 258-292 (416)
301 2gxq_A Heat resistant RNA depe 95.3 0.044 1.5E-06 52.6 8.4 17 248-264 39-55 (207)
302 2h92_A Cytidylate kinase; ross 95.3 0.012 3.9E-07 57.6 4.3 31 248-278 4-34 (219)
303 3j16_B RLI1P; ribosome recycli 95.3 0.025 8.4E-07 64.7 7.5 57 296-366 229-285 (608)
304 1ltq_A Polynucleotide kinase; 95.3 0.0086 2.9E-07 61.6 3.4 36 247-284 2-38 (301)
305 2j41_A Guanylate kinase; GMP, 95.3 0.0099 3.4E-07 57.2 3.7 25 247-271 6-30 (207)
306 1vht_A Dephospho-COA kinase; s 95.3 0.011 3.7E-07 57.9 4.0 34 248-284 5-38 (218)
307 2qt1_A Nicotinamide riboside k 95.3 0.0072 2.4E-07 58.7 2.6 29 249-277 23-52 (207)
308 1q3t_A Cytidylate kinase; nucl 95.3 0.013 4.4E-07 58.3 4.6 36 247-284 16-51 (236)
309 1yqt_A RNAse L inhibitor; ATP- 95.2 0.024 8.2E-07 63.9 7.1 58 294-365 164-221 (538)
310 1htw_A HI0065; nucleotide-bind 95.2 0.011 3.9E-07 55.6 3.7 22 250-271 36-57 (158)
311 2oap_1 GSPE-2, type II secreti 95.2 0.011 3.9E-07 66.1 4.2 69 248-316 261-343 (511)
312 1yqt_A RNAse L inhibitor; ATP- 95.2 0.029 9.8E-07 63.3 7.5 103 249-364 314-464 (538)
313 1xx6_A Thymidine kinase; NESG, 95.1 0.048 1.7E-06 52.9 8.0 69 249-318 10-93 (191)
314 2axn_A 6-phosphofructo-2-kinas 95.1 0.049 1.7E-06 61.1 9.2 40 248-287 36-78 (520)
315 2xau_A PRE-mRNA-splicing facto 95.1 0.053 1.8E-06 63.8 9.7 23 248-270 110-132 (773)
316 1w36_D RECD, exodeoxyribonucle 95.0 0.044 1.5E-06 62.7 8.7 23 248-270 165-187 (608)
317 1lvg_A Guanylate kinase, GMP k 95.0 0.017 5.9E-07 56.0 4.6 24 248-271 5-28 (198)
318 1ewq_A DNA mismatch repair pro 95.0 0.056 1.9E-06 63.4 9.5 24 247-270 576-599 (765)
319 3a00_A Guanylate kinase, GMP k 95.0 0.013 4.5E-07 56.0 3.5 24 248-271 2-25 (186)
320 2iw3_A Elongation factor 3A; a 94.9 0.018 6.3E-07 69.0 5.3 56 294-366 554-609 (986)
321 3g5u_A MCG1178, multidrug resi 94.9 0.016 5.4E-07 72.0 5.0 58 293-365 1176-1233(1284)
322 3d3q_A TRNA delta(2)-isopenten 94.9 0.012 4E-07 62.5 3.2 33 248-280 8-40 (340)
323 3asz_A Uridine kinase; cytidin 94.9 0.012 4E-07 57.2 3.1 25 248-272 7-31 (211)
324 3bk7_A ABC transporter ATP-bin 94.9 0.031 1.1E-06 63.9 6.9 58 294-365 234-291 (607)
325 2qmh_A HPR kinase/phosphorylas 94.9 0.012 4E-07 57.8 2.9 32 247-279 34-65 (205)
326 2f6r_A COA synthase, bifunctio 94.9 0.015 5.1E-07 59.9 3.8 35 248-285 76-110 (281)
327 3exa_A TRNA delta(2)-isopenten 94.9 0.014 4.8E-07 61.2 3.6 35 248-282 4-38 (322)
328 2yhs_A FTSY, cell division pro 94.9 0.17 5.8E-06 56.2 12.5 23 249-271 295-317 (503)
329 3tr0_A Guanylate kinase, GMP k 94.8 0.016 5.6E-07 55.6 3.8 23 249-271 9-31 (205)
330 3ux8_A Excinuclease ABC, A sub 94.8 0.014 4.9E-07 67.5 3.7 67 294-381 549-618 (670)
331 2jeo_A Uridine-cytidine kinase 94.8 0.015 5.2E-07 58.2 3.5 33 242-274 18-52 (245)
332 3fdi_A Uncharacterized protein 94.7 0.019 6.5E-07 56.1 4.0 29 249-277 8-36 (201)
333 2v9p_A Replication protein E1; 94.7 0.013 4.6E-07 61.2 2.9 33 239-271 116-150 (305)
334 1znw_A Guanylate kinase, GMP k 94.6 0.017 5.7E-07 56.3 3.4 24 249-272 22-45 (207)
335 1hv8_A Putative ATP-dependent 94.6 0.13 4.5E-06 53.3 10.4 68 211-280 6-82 (367)
336 4b3f_X DNA-binding protein smu 94.6 0.048 1.6E-06 62.7 7.5 33 250-282 208-243 (646)
337 1t6n_A Probable ATP-dependent 94.5 0.2 6.9E-06 48.5 10.8 58 211-270 14-74 (220)
338 2o8b_B DNA mismatch repair pro 94.5 0.086 2.9E-06 63.8 9.6 104 248-366 790-916 (1022)
339 3lnc_A Guanylate kinase, GMP k 94.4 0.021 7.1E-07 56.5 3.4 23 249-271 29-52 (231)
340 3iuy_A Probable ATP-dependent 94.2 0.079 2.7E-06 51.9 7.3 57 207-265 15-75 (228)
341 3e70_C DPA, signal recognition 94.2 0.061 2.1E-06 56.7 6.8 26 246-271 128-153 (328)
342 1qde_A EIF4A, translation init 94.2 0.11 3.8E-06 50.5 8.3 52 210-263 13-67 (224)
343 2gza_A Type IV secretion syste 94.2 0.044 1.5E-06 58.5 5.6 69 248-316 176-262 (361)
344 1c9k_A COBU, adenosylcobinamid 94.2 0.03 1E-06 54.0 3.9 32 250-282 2-33 (180)
345 3b9q_A Chloroplast SRP recepto 94.1 0.041 1.4E-06 57.3 5.1 25 247-271 100-124 (302)
346 1x6v_B Bifunctional 3'-phospho 94.1 0.038 1.3E-06 63.3 5.2 37 247-283 52-91 (630)
347 1zu4_A FTSY; GTPase, signal re 94.0 0.064 2.2E-06 56.3 6.4 35 246-280 104-141 (320)
348 2pl3_A Probable ATP-dependent 94.0 0.15 5.2E-06 50.1 8.8 53 210-264 24-79 (236)
349 3eph_A TRNA isopentenyltransfe 94.0 0.024 8.3E-07 61.4 3.1 33 248-280 3-35 (409)
350 1ls1_A Signal recognition part 93.9 0.095 3.3E-06 54.3 7.4 72 247-318 98-192 (295)
351 1odf_A YGR205W, hypothetical 3 93.9 0.032 1.1E-06 57.8 3.7 38 246-283 30-73 (290)
352 3kta_A Chromosome segregation 93.8 0.025 8.6E-07 53.4 2.6 24 249-272 28-51 (182)
353 3bor_A Human initiation factor 93.7 0.091 3.1E-06 52.0 6.6 55 209-265 28-85 (237)
354 2orv_A Thymidine kinase; TP4A 93.7 0.23 7.7E-06 49.7 9.4 89 250-361 22-125 (234)
355 2xxa_A Signal recognition part 93.6 0.15 5.2E-06 55.8 8.6 72 245-316 98-193 (433)
356 3ux8_A Excinuclease ABC, A sub 93.6 0.067 2.3E-06 61.8 6.1 57 294-364 208-266 (670)
357 2lna_A AFG3-like protein 2; st 93.6 0.13 4.4E-06 44.6 6.4 61 80-142 14-76 (99)
358 2oxc_A Probable ATP-dependent 93.6 0.21 7.1E-06 49.0 8.9 55 208-264 21-78 (230)
359 2j9r_A Thymidine kinase; TK1, 93.6 0.14 4.9E-06 50.6 7.5 30 250-279 31-63 (214)
360 2qm8_A GTPase/ATPase; G protei 93.5 0.096 3.3E-06 55.3 6.8 22 250-271 58-79 (337)
361 3p32_A Probable GTPase RV1496/ 93.5 0.27 9.1E-06 52.1 10.3 32 248-279 80-114 (355)
362 1gtv_A TMK, thymidylate kinase 93.5 0.018 6.2E-07 55.7 1.0 23 250-272 3-25 (214)
363 1a7j_A Phosphoribulokinase; tr 93.5 0.028 9.6E-07 58.2 2.4 36 249-284 7-45 (290)
364 2og2_A Putative signal recogni 93.4 0.058 2E-06 57.6 4.8 25 247-271 157-181 (359)
365 1j8m_F SRP54, signal recogniti 93.4 0.13 4.5E-06 53.3 7.4 72 247-318 98-192 (297)
366 1vec_A ATP-dependent RNA helic 93.4 0.34 1.1E-05 46.3 9.8 18 248-265 41-58 (206)
367 2j37_W Signal recognition part 93.4 0.092 3.1E-06 58.6 6.5 35 246-280 100-137 (504)
368 3hdt_A Putative kinase; struct 93.3 0.044 1.5E-06 54.6 3.5 29 249-277 16-44 (223)
369 3tqf_A HPR(Ser) kinase; transf 93.3 0.048 1.6E-06 52.3 3.6 23 248-270 17-39 (181)
370 1s2m_A Putative ATP-dependent 93.3 0.25 8.6E-06 52.2 9.7 58 209-268 19-79 (400)
371 1bif_A 6-phosphofructo-2-kinas 93.3 0.19 6.6E-06 55.3 9.0 40 247-286 39-81 (469)
372 2zu0_C Probable ATP-dependent 93.3 0.021 7.1E-07 58.5 1.0 29 242-270 39-69 (267)
373 2ffh_A Protein (FFH); SRP54, s 93.1 0.27 9.3E-06 53.6 9.7 72 246-317 97-191 (425)
374 4eaq_A DTMP kinase, thymidylat 93.1 0.067 2.3E-06 53.2 4.5 30 249-278 28-59 (229)
375 1p9r_A General secretion pathw 93.0 0.11 3.7E-06 56.7 6.2 93 210-316 143-246 (418)
376 2ged_A SR-beta, signal recogni 92.9 0.093 3.2E-06 49.5 5.0 25 247-271 48-72 (193)
377 3tqc_A Pantothenate kinase; bi 92.9 0.17 5.8E-06 53.2 7.4 38 246-283 91-133 (321)
378 1wp9_A ATP-dependent RNA helic 92.9 0.3 1E-05 52.2 9.6 33 249-281 25-61 (494)
379 2p6r_A Afuhel308 helicase; pro 92.8 0.19 6.5E-06 58.1 8.4 33 248-280 41-76 (702)
380 1sq5_A Pantothenate kinase; P- 92.8 0.044 1.5E-06 57.1 2.7 24 249-272 82-105 (308)
381 3fe2_A Probable ATP-dependent 92.8 0.32 1.1E-05 48.1 8.9 18 248-265 67-84 (242)
382 2va8_A SSO2462, SKI2-type heli 92.7 0.31 1.1E-05 56.4 10.0 33 247-279 46-82 (715)
383 2yz2_A Putative ABC transporte 92.7 0.023 7.9E-07 58.0 0.4 30 242-271 26-57 (266)
384 1np6_A Molybdopterin-guanine d 92.7 0.07 2.4E-06 51.0 3.7 25 247-271 6-30 (174)
385 3b85_A Phosphate starvation-in 92.7 0.044 1.5E-06 53.9 2.3 22 249-270 24-45 (208)
386 2zj8_A DNA helicase, putative 92.7 0.24 8.4E-06 57.4 9.1 33 247-279 39-75 (720)
387 1m8p_A Sulfate adenylyltransfe 92.7 0.081 2.8E-06 60.1 4.8 36 248-283 397-436 (573)
388 2ihy_A ABC transporter, ATP-bi 92.6 0.021 7.3E-07 58.8 -0.1 29 243-271 41-71 (279)
389 3lxx_A GTPase IMAP family memb 92.6 0.21 7.1E-06 49.3 7.2 23 249-271 31-53 (239)
390 3aez_A Pantothenate kinase; tr 92.4 0.071 2.4E-06 55.8 3.7 23 249-271 92-114 (312)
391 3cr8_A Sulfate adenylyltranfer 92.4 0.19 6.4E-06 56.7 7.3 37 249-285 371-411 (552)
392 1xti_A Probable ATP-dependent 92.3 0.52 1.8E-05 49.4 10.4 57 211-269 8-67 (391)
393 1rj9_A FTSY, signal recognitio 92.3 0.084 2.9E-06 55.0 4.1 25 247-271 102-126 (304)
394 1sgw_A Putative ABC transporte 92.3 0.053 1.8E-06 53.6 2.3 22 250-271 38-59 (214)
395 2z0m_A 337AA long hypothetical 92.2 0.27 9.1E-06 50.4 7.8 33 248-280 32-64 (337)
396 3ber_A Probable ATP-dependent 92.1 0.31 1.1E-05 48.7 7.9 54 210-265 42-98 (249)
397 3ice_A Transcription terminati 92.1 0.24 8.3E-06 53.4 7.3 23 249-271 176-198 (422)
398 4i1u_A Dephospho-COA kinase; s 92.1 0.16 5.5E-06 50.0 5.6 38 248-288 10-47 (210)
399 2j0s_A ATP-dependent RNA helic 92.0 0.41 1.4E-05 50.8 9.2 58 209-268 35-95 (410)
400 3pey_A ATP-dependent RNA helic 92.0 0.42 1.4E-05 50.0 9.1 21 247-267 44-64 (395)
401 3dz8_A RAS-related protein RAB 92.0 0.51 1.7E-05 44.4 8.8 23 249-271 25-47 (191)
402 3lxw_A GTPase IMAP family memb 92.0 0.24 8.1E-06 49.6 6.8 23 249-271 23-45 (247)
403 4a2p_A RIG-I, retinoic acid in 91.9 0.68 2.3E-05 51.1 11.1 33 248-280 23-63 (556)
404 2bbs_A Cystic fibrosis transme 91.9 0.032 1.1E-06 57.8 0.2 32 240-271 55-88 (290)
405 1q0u_A Bstdead; DEAD protein, 91.9 0.28 9.4E-06 47.6 7.0 18 248-265 42-59 (219)
406 1sky_E F1-ATPase, F1-ATP synth 91.8 0.13 4.4E-06 56.8 5.0 23 249-271 153-175 (473)
407 2ocp_A DGK, deoxyguanosine kin 91.8 0.093 3.2E-06 52.1 3.6 26 247-272 2-27 (241)
408 1p5z_B DCK, deoxycytidine kina 91.7 0.048 1.6E-06 55.1 1.3 29 248-276 25-54 (263)
409 1xjc_A MOBB protein homolog; s 91.6 0.11 3.7E-06 49.5 3.6 33 247-279 4-39 (169)
410 3i5x_A ATP-dependent RNA helic 91.6 0.56 1.9E-05 52.3 10.1 17 247-263 111-127 (563)
411 2f9l_A RAB11B, member RAS onco 91.6 0.093 3.2E-06 50.1 3.1 23 249-271 7-29 (199)
412 3ly5_A ATP-dependent RNA helic 91.6 0.32 1.1E-05 49.0 7.3 18 248-265 92-109 (262)
413 3sqw_A ATP-dependent RNA helic 91.5 0.56 1.9E-05 52.8 10.1 56 208-263 14-76 (579)
414 1oix_A RAS-related protein RAB 91.5 0.091 3.1E-06 50.0 3.0 22 250-271 32-53 (191)
415 2npi_A Protein CLP1; CLP1-PCF1 91.5 0.074 2.5E-06 58.7 2.6 23 249-271 140-162 (460)
416 3sop_A Neuronal-specific septi 91.5 0.09 3.1E-06 53.7 3.1 23 249-271 4-26 (270)
417 3tbk_A RIG-I helicase domain; 91.4 0.95 3.3E-05 49.7 11.6 34 248-281 20-61 (555)
418 1lw7_A Transcriptional regulat 91.4 0.1 3.5E-06 55.5 3.5 25 249-273 172-196 (365)
419 4edh_A DTMP kinase, thymidylat 91.4 0.16 5.5E-06 50.0 4.7 31 249-279 8-41 (213)
420 1fuu_A Yeast initiation factor 91.4 0.39 1.3E-05 50.4 8.0 54 209-264 19-75 (394)
421 2iw3_A Elongation factor 3A; a 91.3 0.48 1.6E-05 56.9 9.4 22 250-271 702-723 (986)
422 2v6i_A RNA helicase; membrane, 91.1 0.59 2E-05 50.8 9.3 33 248-280 3-39 (431)
423 3e2i_A Thymidine kinase; Zn-bi 91.1 0.24 8.3E-06 49.0 5.6 68 250-318 31-113 (219)
424 1f2t_A RAD50 ABC-ATPase; DNA d 91.1 0.077 2.6E-06 49.1 1.9 22 250-271 26-47 (149)
425 2dpy_A FLII, flagellum-specifi 91.0 0.18 6E-06 55.3 5.0 25 250-274 160-184 (438)
426 3vkw_A Replicase large subunit 91.0 0.16 5.6E-06 55.6 4.7 23 248-270 162-184 (446)
427 2gk6_A Regulator of nonsense t 91.0 0.34 1.2E-05 55.4 7.5 34 249-282 197-234 (624)
428 1gm5_A RECG; helicase, replica 90.9 1.1 3.7E-05 52.7 11.9 34 247-280 389-425 (780)
429 2gks_A Bifunctional SAT/APS ki 90.9 0.46 1.6E-05 53.5 8.4 38 248-285 373-413 (546)
430 2f1r_A Molybdopterin-guanine d 90.8 0.086 2.9E-06 50.2 2.0 24 248-271 3-26 (171)
431 2fwr_A DNA repair protein RAD2 90.8 0.53 1.8E-05 51.3 8.6 37 249-285 110-147 (472)
432 1wrb_A DJVLGB; RNA helicase, D 90.7 0.43 1.5E-05 47.3 7.2 18 248-265 61-78 (253)
433 2dyk_A GTP-binding protein; GT 90.7 0.14 4.6E-06 46.4 3.2 23 249-271 3-25 (161)
434 2obl_A ESCN; ATPase, hydrolase 90.7 0.19 6.3E-06 53.4 4.7 25 250-274 74-98 (347)
435 3v9p_A DTMP kinase, thymidylat 90.6 0.17 5.8E-06 50.5 4.1 31 249-279 27-64 (227)
436 2p67_A LAO/AO transport system 90.4 0.41 1.4E-05 50.4 7.0 24 248-271 57-80 (341)
437 1z2a_A RAS-related protein RAB 90.4 0.15 5E-06 46.4 3.1 22 249-270 7-28 (168)
438 2wji_A Ferrous iron transport 90.3 0.12 4.2E-06 47.6 2.6 22 249-270 5-26 (165)
439 1kao_A RAP2A; GTP-binding prot 90.2 0.16 5.4E-06 46.0 3.2 23 249-271 5-27 (167)
440 3dkp_A Probable ATP-dependent 90.2 0.53 1.8E-05 46.3 7.3 17 248-264 67-83 (245)
441 2i4i_A ATP-dependent RNA helic 90.1 0.57 1.9E-05 49.7 8.0 54 208-263 12-68 (417)
442 2v3c_C SRP54, signal recogniti 90.1 0.14 4.8E-06 56.0 3.2 35 247-281 99-136 (432)
443 2zej_A Dardarin, leucine-rich 90.1 0.11 3.8E-06 48.8 2.1 21 250-270 5-25 (184)
444 1nrj_B SR-beta, signal recogni 90.0 0.19 6.5E-06 48.4 3.8 24 248-271 13-36 (218)
445 3h1t_A Type I site-specific re 90.0 0.46 1.6E-05 53.6 7.5 45 217-271 178-222 (590)
446 2ce2_X GTPase HRAS; signaling 90.0 0.16 5.3E-06 45.9 3.0 23 249-271 5-27 (166)
447 2wsm_A Hydrogenase expression/ 90.0 0.23 7.7E-06 48.1 4.3 24 248-271 31-54 (221)
448 3eiq_A Eukaryotic initiation f 90.0 0.55 1.9E-05 49.6 7.7 19 248-266 78-96 (414)
449 1ek0_A Protein (GTP-binding pr 89.8 0.17 5.9E-06 46.0 3.1 23 249-271 5-27 (170)
450 3fmo_B ATP-dependent RNA helic 89.8 0.65 2.2E-05 47.8 7.8 18 247-264 131-148 (300)
451 1u8z_A RAS-related protein RAL 89.8 0.17 6E-06 45.7 3.1 22 249-270 6-27 (168)
452 3tmk_A Thymidylate kinase; pho 89.8 0.25 8.7E-06 48.8 4.5 29 248-276 6-34 (216)
453 1z0j_A RAB-22, RAS-related pro 89.8 0.18 6.1E-06 46.0 3.2 23 249-271 8-30 (170)
454 2nzj_A GTP-binding protein REM 89.7 0.15 5.1E-06 46.8 2.7 22 249-270 6-27 (175)
455 2wjg_A FEOB, ferrous iron tran 89.6 0.16 5.5E-06 47.5 2.8 22 249-270 9-30 (188)
456 1wms_A RAB-9, RAB9, RAS-relate 89.6 0.19 6.3E-06 46.4 3.2 22 249-270 9-30 (177)
457 1z08_A RAS-related protein RAB 89.5 0.19 6.5E-06 45.9 3.2 22 249-270 8-29 (170)
458 1g16_A RAS-related protein SEC 89.5 0.18 6.1E-06 46.0 3.0 22 249-270 5-26 (170)
459 1ky3_A GTP-binding protein YPT 89.4 0.19 6.6E-06 46.3 3.2 23 249-271 10-32 (182)
460 3def_A T7I23.11 protein; chlor 89.4 0.65 2.2E-05 46.6 7.4 23 249-271 38-60 (262)
461 1g8f_A Sulfate adenylyltransfe 89.4 0.16 5.3E-06 56.8 2.9 26 248-273 396-421 (511)
462 2erx_A GTP-binding protein DI- 89.4 0.18 6.1E-06 46.0 2.9 22 249-270 5-26 (172)
463 1r2q_A RAS-related protein RAB 89.2 0.2 6.9E-06 45.5 3.1 22 249-270 8-29 (170)
464 2hxs_A RAB-26, RAS-related pro 89.2 0.21 7.1E-06 46.1 3.2 22 249-270 8-29 (178)
465 1c1y_A RAS-related protein RAP 89.2 0.21 7.1E-06 45.4 3.1 22 249-270 5-26 (167)
466 3q85_A GTP-binding protein REM 89.1 0.18 6.1E-06 46.1 2.6 20 250-269 5-24 (169)
467 3bc1_A RAS-related protein RAB 89.0 0.21 7.2E-06 46.5 3.1 22 249-270 13-34 (195)
468 3l9o_A ATP-dependent RNA helic 89.0 1.5 5.3E-05 53.4 11.5 33 248-280 200-235 (1108)
469 1svi_A GTP-binding protein YSX 89.0 0.15 5E-06 48.1 2.0 24 247-270 23-46 (195)
470 1r8s_A ADP-ribosylation factor 89.0 0.22 7.5E-06 45.2 3.1 21 250-270 3-23 (164)
471 2f7s_A C25KG, RAS-related prot 88.9 1.3 4.3E-05 42.4 8.8 22 249-270 27-48 (217)
472 3fmp_B ATP-dependent RNA helic 88.9 0.77 2.6E-05 50.1 8.0 23 247-269 131-154 (479)
473 3lv8_A DTMP kinase, thymidylat 88.8 0.24 8.1E-06 49.7 3.5 31 248-278 28-62 (236)
474 2lkc_A Translation initiation 88.8 0.27 9.1E-06 45.3 3.6 23 248-270 9-31 (178)
475 2gj8_A MNME, tRNA modification 88.8 0.19 6.5E-06 46.9 2.6 22 249-270 6-27 (172)
476 2y8e_A RAB-protein 6, GH09086P 88.7 0.22 7.4E-06 45.8 3.0 22 249-270 16-37 (179)
477 3clv_A RAB5 protein, putative; 88.7 0.23 7.8E-06 46.5 3.2 22 249-270 9-30 (208)
478 2vp4_A Deoxynucleoside kinase; 88.7 0.24 8.2E-06 48.9 3.4 28 250-278 23-50 (230)
479 3qf7_A RAD50; ABC-ATPase, ATPa 88.6 0.14 4.9E-06 54.5 1.9 26 245-270 20-46 (365)
480 1z0f_A RAB14, member RAS oncog 88.6 0.24 8.1E-06 45.6 3.1 23 249-271 17-39 (179)
481 3q72_A GTP-binding protein RAD 88.6 0.2 6.9E-06 45.6 2.6 21 249-269 4-24 (166)
482 1upt_A ARL1, ADP-ribosylation 88.6 0.24 8.1E-06 45.2 3.1 22 249-270 9-30 (171)
483 4dsu_A GTPase KRAS, isoform 2B 88.6 0.24 8.1E-06 46.1 3.2 23 249-271 6-28 (189)
484 2fn4_A P23, RAS-related protei 88.5 0.23 7.9E-06 45.7 3.0 22 249-270 11-32 (181)
485 1ko7_A HPR kinase/phosphatase; 88.4 0.26 9E-06 51.5 3.6 23 248-270 145-167 (314)
486 2efe_B Small GTP-binding prote 88.4 0.25 8.6E-06 45.6 3.2 22 249-270 14-35 (181)
487 4ag6_A VIRB4 ATPase, type IV s 88.3 0.43 1.5E-05 50.9 5.4 24 247-270 35-58 (392)
488 2a9k_A RAS-related protein RAL 88.3 0.25 8.6E-06 45.7 3.1 22 249-270 20-41 (187)
489 2oil_A CATX-8, RAS-related pro 88.3 0.25 8.5E-06 46.5 3.1 23 249-271 27-49 (193)
490 1pui_A ENGB, probable GTP-bind 88.3 0.095 3.2E-06 50.2 0.2 22 249-270 28-49 (210)
491 3con_A GTPase NRAS; structural 88.3 0.25 8.6E-06 46.3 3.1 23 249-271 23-45 (190)
492 1m7b_A RND3/RHOE small GTP-bin 88.3 0.24 8.2E-06 46.4 3.0 22 249-270 9-30 (184)
493 3t1o_A Gliding protein MGLA; G 88.2 0.26 8.7E-06 46.1 3.2 23 249-271 16-38 (198)
494 2xgj_A ATP-dependent RNA helic 88.2 1.5 5.1E-05 53.0 10.6 33 248-280 102-137 (1010)
495 2bme_A RAB4A, RAS-related prot 88.2 0.25 8.4E-06 46.0 3.0 22 249-270 12-33 (186)
496 2hf9_A Probable hydrogenase ni 88.1 0.44 1.5E-05 46.1 4.9 24 248-271 39-62 (226)
497 3tw8_B RAS-related protein RAB 87.9 0.25 8.6E-06 45.5 2.8 22 249-270 11-32 (181)
498 2db3_A ATP-dependent RNA helic 87.9 1.1 3.9E-05 48.4 8.5 53 209-263 54-109 (434)
499 2qag_B Septin-6, protein NEDD5 87.9 0.26 8.8E-06 53.8 3.3 21 250-270 45-65 (427)
500 2xzl_A ATP-dependent helicase 87.8 0.77 2.6E-05 54.1 7.5 34 249-282 377-414 (802)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=6.3e-85 Score=727.99 Aligned_cols=450 Identities=55% Similarity=0.952 Sum_probs=387.6
Q ss_pred ccccC-CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 005815 203 FEMEP-NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS 281 (676)
Q Consensus 203 ~~~~~-~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s 281 (676)
+..+. .+.++|+||+|++++++++++++.++.++..|..+|.+.|+|+||+||||||||++|+++|++++.||+.++++
T Consensus 4 ~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~ 83 (476)
T 2ce7_A 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGS 83 (476)
T ss_dssp -CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred eeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHH
Confidence 33444 57889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
++.+.+.|.+..+++.+|..|+..+||||||||+|.++.+++.+.++.+.+..+++++|+.+||++..+.+++||++||+
T Consensus 84 ~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~ 163 (476)
T 2ce7_A 84 DFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR 163 (476)
T ss_dssp GTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999888766666778888999999999999888789999999999
Q ss_pred cccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 005815 362 PEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKAN 441 (676)
Q Consensus 362 ~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~ 441 (676)
++.+|++++||||||+.+.+++|+.++|.+|++.|+++.++..++++..++..++|++|+||+++|++|+..|.+++...
T Consensus 164 ~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~ 243 (476)
T 2ce7_A 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243 (476)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999999998899
Q ss_pred CCHHHHHHHHHHHHcCcCCCc-cccccchhhhHHHHHHHHHHHHhCCCCCCCceeeeccCC-CccceeeccCCCCccccC
Q 005815 442 ITLKEIDDSIDRIVAGMEGTK-MTDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRG-QARGLTWFLPEEDPALIS 519 (676)
Q Consensus 442 It~~di~~Ai~~v~~g~~~~~-~~~~~~~~~~A~hEaghal~a~~l~~~~~v~~vti~~r~-~~~G~~~~~~~~~~~~~t 519 (676)
|+.+|+.+|++++..|.++.. ..+..++..+||||+|||++++++++.+++.+++|+||| +++||+++.|.++.+++|
T Consensus 244 I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~ 323 (476)
T 2ce7_A 244 ITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVS 323 (476)
T ss_dssp BCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCB
T ss_pred ecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccC
Confidence 999999999999998876654 446678899999999999999999999999999999999 899999999998999999
Q ss_pred HHHHHHHHHhchhhhhhhhhhcCCCCcccCchhHHHHHHHHHHHHHHHhCCCC-CCCccccCCCcchhhHHHH-Hhhccc
Q 005815 520 KQQLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQITQIARQMVTRYGMSE-IGPWTLIDPSVQSSDVVMR-MLARNS 597 (676)
Q Consensus 520 ~~~l~~~i~~~LaGraAE~~~~g~~~~~~Ga~~DL~~AT~lA~~mv~~~Gms~-~G~~~~~~~~~~~~d~l~~-~~~~~~ 597 (676)
|.+|+++|+++|||||||+++||+ +||||+|||++||+||+.||++||||+ +|++.|.....+. |+++ +...++
T Consensus 324 ~~~l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~--~~~~~~~~~~~ 399 (476)
T 2ce7_A 324 RNELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEV--FLGKEITRLRN 399 (476)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC---------------CCC
T ss_pred HHHHHHHHHHHHhHHHHHhhhcCC--CCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccc--ccccccccccc
Confidence 999999999999999999999995 899999999999999999999999998 9999987543322 5543 334578
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcc
Q 005815 598 MSEKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSE 656 (676)
Q Consensus 598 ~se~~~~~id~ev~~ll~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~ 656 (676)
||++++..||+||++++++||++|+++|++||+.|++||++|+|+|||+++||++|++.
T Consensus 400 ~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 400 YSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999975
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=2.5e-83 Score=718.89 Aligned_cols=463 Identities=50% Similarity=0.858 Sum_probs=418.0
Q ss_pred CCCCCCCccccccccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHH
Q 005815 188 GGPNLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAI 267 (676)
Q Consensus 188 ~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAl 267 (676)
|+++..|+|++|++++..+. +.++|+||+|++++++++++++.++.++..|..++.++|+|+||+||||||||+||+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 6 GPSDSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp ------------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHH
T ss_pred CCCCCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 33345789999999988777 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC
Q 005815 268 AGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 347 (676)
Q Consensus 268 A~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~ 347 (676)
|++++.+|+.++++++.+.+.+....+++.+|+.++...|||+||||||.++.+++.+.++..++..+++++++.+|+++
T Consensus 85 a~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 85 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp HHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred HHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 99999999999999999989999999999999999888899999999999988776544456778889999999999999
Q ss_pred CCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHH
Q 005815 348 TGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLM 427 (676)
Q Consensus 348 ~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv 427 (676)
..+..++++++||+|+.||++++||||||++|.+++||.++|.+||+.|+++..+.+++++..++..++|++|+||+++|
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv 244 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 244 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHH
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCCc-cccccchhhhHHHHHHHHHHHHhCCCCCCCceeeeccCCCccce
Q 005815 428 NEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTK-MTDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGL 506 (676)
Q Consensus 428 ~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~~-~~~~~~~~~~A~hEaghal~a~~l~~~~~v~~vti~~r~~~~G~ 506 (676)
++|+..|.+++...|+.+|+++|++++..+.++.. ..++.+++.+||||+|||++++++++.++|+++||+||++++||
T Consensus 245 ~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~ 324 (499)
T 2dhr_A 245 NEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGF 324 (499)
T ss_dssp HHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCS
T ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcc
Confidence 99999999888889999999999999999876654 44677889999999999999999999999999999999999999
Q ss_pred eeccCC-CCccccCHHHHHHHHHhchhhhhhhhhhcCCCCcccCchhHHHHHHHHHHHHHHHhCCCC-CCCccccCCCcc
Q 005815 507 TWFLPE-EDPALISKQQLFARIVGGLGGRAAEEVIFGEAEITTGAAGDLQQITQIARQMVTRYGMSE-IGPWTLIDPSVQ 584 (676)
Q Consensus 507 ~~~~~~-~~~~~~t~~~l~~~i~~~LaGraAE~~~~g~~~~~~Ga~~DL~~AT~lA~~mv~~~Gms~-~G~~~~~~~~~~ 584 (676)
++ |. ++.+++||.+|+++|+++|||||||+++||+ +||||+|||++||+||+.||++||||+ +|++.|.....
T Consensus 325 ~~--p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~- 399 (499)
T 2dhr_A 325 MM--PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVRED- 399 (499)
T ss_dssp SH--HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCC-
T ss_pred cc--cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcc--cCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCc-
Confidence 98 66 7888999999999999999999999999994 899999999999999999999999998 99998875432
Q ss_pred hhhHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcccCC
Q 005815 585 SSDVVMRMLARNSMSEKLADDIDKTVRNIIESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTD 659 (676)
Q Consensus 585 ~~d~l~~~~~~~~~se~~~~~id~ev~~ll~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~ 659 (676)
.|++.+. .++||++++..||+||+++|++||++|+++|++||+.|++||++|+|+|||+++||++|++....
T Consensus 400 --~~~~~~~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~ 471 (499)
T 2dhr_A 400 --TYLGGYD-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPL 471 (499)
T ss_dssp --CSSCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCC
T ss_pred --ccccccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCC
Confidence 1333222 57899999999999999999999999999999999999999999999999999999999987643
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-52 Score=454.24 Aligned_cols=260 Identities=36% Similarity=0.689 Sum_probs=247.4
Q ss_pred ccccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 201 AKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 201 ~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
..+...+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.++
T Consensus 135 ~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 34455677899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 280 GSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 280 ~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
++++.++|+|.+++.++.+|..|+..+||||||||||+++++|..+.++++.+..+++++||.+||++....+|+||+||
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 99999999999999999999999999999999999999999987766666778889999999999999999999999999
Q ss_pred CCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 005815 360 NRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK 439 (676)
Q Consensus 360 N~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 439 (676)
|+|+.||||++||||||++|+|++||.++|.+||+.|+++..+..++|+..||+.|+||||+||+++|++|++.|.++++
T Consensus 295 Nrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~ 374 (405)
T 4b4t_J 295 NRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR 374 (405)
T ss_dssp SCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCcCC
Q 005815 440 ANITLKEIDDSIDRIVAGMEG 460 (676)
Q Consensus 440 ~~It~~di~~Ai~~v~~g~~~ 460 (676)
..|+++||..|+++++.....
T Consensus 375 ~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 375 IHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp SBCCHHHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHhCcccc
Confidence 999999999999999765443
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-53 Score=459.00 Aligned_cols=300 Identities=35% Similarity=0.581 Sum_probs=262.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccccccccccccCCCCCcccccccchhhHHHHHHHHHH-hcChh
Q 005815 159 SLLDFLANFGFPLLLLGSLFLRSSSVNSPGGPNLPFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPE 237 (676)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~ 237 (676)
+++.++..+....+..+..+++.++.....+ ..+-....+...+.+++.++++|+||+|++++|++|++.+.+ +++|+
T Consensus 128 ~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~-~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe 206 (437)
T 4b4t_I 128 YYVSILSFVDKELLEPGCSVLLHHKTMSIVG-VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPE 206 (437)
T ss_dssp CEEECCTTSCGGGCCTTCEEEECTTTCCEEE-EECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCH
T ss_pred EEEecccccCHhHccCCcEEEEeccCcccee-ecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHH
Confidence 3444444444444445544444443321111 111122233345667788999999999999999999999988 99999
Q ss_pred HHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCcc
Q 005815 238 KFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDA 317 (676)
Q Consensus 238 ~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 317 (676)
.|...|.++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|.+++.++.+|..|+..+||||||||+|+
T Consensus 207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESS
T ss_pred HHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHh
Q 005815 318 VGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHS 397 (676)
Q Consensus 318 l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l 397 (676)
++.+|..+..+++.+..+++++||.+||++....+|+||+|||+|+.||||++||||||++|+|++||.++|.+||+.|+
T Consensus 287 i~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 287 IGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp SSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred hcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 99999876666777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcC
Q 005815 398 NNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGME 459 (676)
Q Consensus 398 ~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~ 459 (676)
++..+..++|+..||..|+||||+||+++|++|++.|.++++..|+++||..|++++..+..
T Consensus 367 ~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 367 SKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp TTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999976543
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-51 Score=447.38 Aligned_cols=264 Identities=39% Similarity=0.710 Sum_probs=250.0
Q ss_pred cccccccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005815 198 RSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 276 (676)
Q Consensus 198 ~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i 276 (676)
.....+.+++.|+++|+||+|++++|++|++.+.+ +.+|+.|..+|.++|+|||||||||||||++|+|+|++++++|+
T Consensus 193 ~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi 272 (467)
T 4b4t_H 193 PSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI 272 (467)
T ss_dssp CCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE
Confidence 33445667788999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred EEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEE
Q 005815 277 SLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVI 356 (676)
Q Consensus 277 ~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVI 356 (676)
.++++++.++|+|.+++.++.+|..|+..+||||||||+|+++.+|.....+.......+++++|.+||++....+|+||
T Consensus 273 ~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 273 RVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp EEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred EEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999987766666677888999999999999999999999
Q ss_pred EecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 005815 357 AATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGR 436 (676)
Q Consensus 357 aaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r 436 (676)
+|||+|+.||||++||||||++|+|++||.++|.+||+.|+++..+..++++..||+.|+||||+||+++|++|++.|.+
T Consensus 353 aATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air 432 (467)
T 4b4t_H 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432 (467)
T ss_dssp EECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHcCcCCC
Q 005815 437 RGKANITLKEIDDSIDRIVAGMEGT 461 (676)
Q Consensus 437 ~~~~~It~~di~~Ai~~v~~g~~~~ 461 (676)
+++..|+.+||..|+++++.|.++.
T Consensus 433 ~~~~~it~~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 433 ARRKVATEKDFLKAVDKVISGYKKF 457 (467)
T ss_dssp HTCSSBCHHHHHHHHHHHHHHHCC-
T ss_pred cCCCccCHHHHHHHHHHHhcCcccc
Confidence 9999999999999999999887653
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-50 Score=439.91 Aligned_cols=257 Identities=38% Similarity=0.664 Sum_probs=245.1
Q ss_pred ccccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 201 AKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 201 ~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
..+.+.+.++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++++|+.++
T Consensus 168 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 168 YNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred heeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34455677899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 280 GSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 280 ~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
++++.++|+|.++..++.+|..|+.++||||||||+|+++.+|.......+.+...++++||.+||++....+|+||+||
T Consensus 248 ~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 248 ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp GGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred hhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 99999999999999999999999999999999999999999987766666777889999999999999999999999999
Q ss_pred CCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 005815 360 NRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK 439 (676)
Q Consensus 360 N~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 439 (676)
|+|+.||||++||||||++|+|++||.++|.+||+.|+++..+..++|+..+|+.|+||||+||.++|++|++.|.++++
T Consensus 328 Nrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 328 NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp SSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 005815 440 ANITLKEIDDSIDRIVAG 457 (676)
Q Consensus 440 ~~It~~di~~Ai~~v~~g 457 (676)
..|+.+||..|++++...
T Consensus 408 ~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp SSBCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998754
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-50 Score=442.74 Aligned_cols=257 Identities=37% Similarity=0.670 Sum_probs=244.1
Q ss_pred ccccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 201 AKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 201 ~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
..+..++.++++|+||+|++++|++|++.+.+ +.+|+.|...|.++|+|||||||||||||++|+|+|+++++||+.++
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 34556678899999999999999999998776 99999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 280 GSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 280 ~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
++++..+|+|.+++.++.+|..|+.++||||||||+|+++.+|..+..++..+...++++||.+||++....+|+||+||
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaT 327 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAAT 327 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred hhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999987766666778888999999999999999999999999
Q ss_pred CCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 005815 360 NRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK 439 (676)
Q Consensus 360 N~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 439 (676)
|+|+.||||++||||||++|+|++||.++|.+||+.|+++..+..++|+..||+.|+||||+||+++|++|++.|.++++
T Consensus 328 Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 328 NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 005815 440 ANITLKEIDDSIDRIVAG 457 (676)
Q Consensus 440 ~~It~~di~~Ai~~v~~g 457 (676)
..|+.+||.+|++++...
T Consensus 408 ~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 408 SSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp SSBCHHHHHHHHHSCSSS
T ss_pred CCcCHHHHHHHHHHHhCC
Confidence 999999999999887543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-49 Score=433.46 Aligned_cols=256 Identities=37% Similarity=0.634 Sum_probs=243.9
Q ss_pred ccccccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 201 AKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 201 ~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
..+.+++.++++|+||+|++++|++|++.+.+ +.+|+.|..+|..+|+|+|||||||||||++|+|+|++++++|+.++
T Consensus 159 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 159 SVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34556678899999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 280 GSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 280 ~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
++++.++|+|.++..++.+|..|+.++||||||||+|+++.+|.....+++.+..+++++||.+||++....+|+||+||
T Consensus 239 ~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp GGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred cchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999987766667778889999999999999999999999999
Q ss_pred CCcccccccccCCCccceEEecC-CCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 005815 360 NRPEILDSALHRPGRFDRQVSVG-LPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438 (676)
Q Consensus 360 N~~~~Ld~aLlrpGRfd~~I~v~-~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 438 (676)
|+|+.||||++||||||++|+|+ +|+.++|..||+.|+++..+..++|+..||..|+||||+||+++|++|++.|.+++
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999996 89999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHc
Q 005815 439 KANITLKEIDDSIDRIVA 456 (676)
Q Consensus 439 ~~~It~~di~~Ai~~v~~ 456 (676)
+..|+++||++|+.+++.
T Consensus 399 ~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 399 RYVILQSDLEEAYATQVK 416 (428)
T ss_dssp CSSBCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhC
Confidence 999999999999988754
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=1.5e-48 Score=395.03 Aligned_cols=201 Identities=38% Similarity=0.578 Sum_probs=159.9
Q ss_pred cCcCCCc-cccccchhhhHHHHHHHHHHHHhCCCCCCCceeeeccCCCccceeeccCCCCccccCHHHHHHHHHhchhhh
Q 005815 456 AGMEGTK-MTDGKNKILVAYHEIGHAVCATLTPGHDPVQKVTLIPRGQARGLTWFLPEEDPALISKQQLFARIVGGLGGR 534 (676)
Q Consensus 456 ~g~~~~~-~~~~~~~~~~A~hEaghal~a~~l~~~~~v~~vti~~r~~~~G~~~~~~~~~~~~~t~~~l~~~i~~~LaGr 534 (676)
.|+++++ ..++++++++||||+||||+++++++.+||+||||+|||+++|||++.|.++.+++||.+|+++|+++||||
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGR 81 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGR 81 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHH
Confidence 4666654 568889999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred hhhhhhcCCCCcccCchhHHHHHHHHHHHHHHHhCCCC-CCCccccCCCcchhhHHHHHhhcccccHHHHHHHHHHHHHH
Q 005815 535 AAEEVIFGEAEITTGAAGDLQQITQIARQMVTRYGMSE-IGPWTLIDPSVQSSDVVMRMLARNSMSEKLADDIDKTVRNI 613 (676)
Q Consensus 535 aAE~~~~g~~~~~~Ga~~DL~~AT~lA~~mv~~~Gms~-~G~~~~~~~~~~~~d~l~~~~~~~~~se~~~~~id~ev~~l 613 (676)
|||+++||..++||||+|||++||+||+.||++||||+ +||++|..... .|++.+...++||++++..||.||+++
T Consensus 82 aAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~---~flg~~~~~~~~Se~ta~~iD~Ev~~i 158 (238)
T 2di4_A 82 AAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVAN---PFLGGMTTAVDTSPDLLREIDEEVKRI 158 (238)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCcc---ccccccccccccCHHHHHHHHHHHHHH
Confidence 99999996546999999999999999999999999998 99999875432 356533346789999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHHHcccCC
Q 005815 614 IESAYEVAKNHIRNNREAIDKLVDVLMEKETLSGDEFRAVLSEFTD 659 (676)
Q Consensus 614 l~~ay~~A~~iL~~~r~~l~~la~~Lle~etL~g~ei~~il~~~~~ 659 (676)
+++||++|++||++||+.|++||++|+++|||+++||++|++.++.
T Consensus 159 l~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~~ 204 (238)
T 2di4_A 159 ITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGI 204 (238)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999987643
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7.5e-44 Score=416.83 Aligned_cols=231 Identities=44% Similarity=0.799 Sum_probs=187.3
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
..+.++|+||+|++++|++|++.+.+ +++|+.|...|..+|+|+|||||||||||++|+|+|++++.||+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45679999999999999999999988 79999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+|+|.+++.++.+|+.|+..+||||||||||+++.+|+...++++....+++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999887654445556778999999999999999999999999999999
Q ss_pred cccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 005815 366 DSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRR 437 (676)
Q Consensus 366 d~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 437 (676)
|+|++||||||++|+|++||.++|.+||+.|+++.++..++|+..||+.|+||||+||+++|++|++.|.++
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3e-41 Score=394.84 Aligned_cols=247 Identities=42% Similarity=0.712 Sum_probs=230.1
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
..+.++|+||+|+++++++|++.+.+ +++|+.|..+|.++|+|||||||||||||+|||++|++++++|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34679999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
++.|.+++.++.+|+.|+.++||||||||||+++++|+.. ......+++++|+.+||++..+.+|+||++||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999888653 2344578999999999999998999999999999999
Q ss_pred cccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC------
Q 005815 366 DSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK------ 439 (676)
Q Consensus 366 d~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~------ 439 (676)
|++++||||||+.|+++.||.++|.+||+.|+++..+..++|+..+|..|+||+|+||.++|++|++.|.++..
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977631
Q ss_pred -----------CCCCHHHHHHHHHHHHc
Q 005815 440 -----------ANITLKEIDDSIDRIVA 456 (676)
Q Consensus 440 -----------~~It~~di~~Ai~~v~~ 456 (676)
..|+.+||..|+..+..
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCC
Confidence 24788999999877654
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=5.8e-39 Score=329.93 Aligned_cols=255 Identities=66% Similarity=1.093 Sum_probs=233.2
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
|.++.+..+|+||+|++++++++.+++.++.++..|...+...|+|++|+||||||||++|+++|++++.|++.++++++
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc
Q 005815 284 IEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363 (676)
Q Consensus 284 ~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~ 363 (676)
.+.+.+.+...++.+|+.+....|+++||||+|.+..++.....++..+..+.+++++..++++..+.+++||++||.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 88888888899999999999999999999999999887766555566677789999999999988888899999999999
Q ss_pred cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCC
Q 005815 364 ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANIT 443 (676)
Q Consensus 364 ~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It 443 (676)
.+|++++|+|||++.+.+++|+.++|.+|++.+++...+.++.++..++..++||+++||.++|++|...|.+++...|+
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~ 241 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS 241 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCc
Q 005815 444 LKEIDDSIDRIVAGM 458 (676)
Q Consensus 444 ~~di~~Ai~~v~~g~ 458 (676)
.+|+++|++++..|.
T Consensus 242 ~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 242 MVEFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999987765
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.5e-37 Score=326.28 Aligned_cols=248 Identities=41% Similarity=0.755 Sum_probs=222.4
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
..++++|+||+|++++++.|++.+.+ +..++.|...+...++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45689999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
.+.|.....++.+|..+....||||||||+|.+...++...........+++++|+..++++....+++||++||+++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999987765432222233356788999999998878889999999999999
Q ss_pred cccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC-------
Q 005815 366 DSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG------- 438 (676)
Q Consensus 366 d~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~------- 438 (676)
|++++|+|||++.+++++|+.++|.+|++.+++...+..++++..++..+.||+|+||.++|++|...|.++.
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999998888788899999999999999999999999999887542
Q ss_pred ------------------CCCCCHHHHHHHHHHH
Q 005815 439 ------------------KANITLKEIDDSIDRI 454 (676)
Q Consensus 439 ------------------~~~It~~di~~Ai~~v 454 (676)
...|+.+||..|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTC
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 1357888888887654
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=323.27 Aligned_cols=246 Identities=40% Similarity=0.727 Sum_probs=207.4
Q ss_pred CCCCcccccccchhhHHHHHHHH-HHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIV-QFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv-~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
.++++|+||+|++++|++|++.+ ..+.+++.|..++..+|+|++|+||||||||+|++++|++++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999865 45899999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 287 FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 287 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
+.+...+.++.+|+.++...||++|+||+|.++..++.. ........+++++.+|++......++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 888888899999999988999999999999997655321 11122457899999999998888899999999999999
Q ss_pred ccccCCCccceEEecCCCCHHHHHHHHHHHhcC---CCCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHc----
Q 005815 367 SALHRPGRFDRQVSVGLPDIRGREQILKVHSNN---KKLDKDVSLSVIATRTP--GFSGADLANLMNEAAILAGRR---- 437 (676)
Q Consensus 367 ~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~---~~l~~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A~r~---- 437 (676)
++++||||||+.|++++|+.++|.+||+.++++ ..+..++++..++..+. ||||+||.++|++|+..|.++
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999864 34567889999999754 999999999999999999875
Q ss_pred -------CCCCCCHHHHHHHHHHHHc
Q 005815 438 -------GKANITLKEIDDSIDRIVA 456 (676)
Q Consensus 438 -------~~~~It~~di~~Ai~~v~~ 456 (676)
+...|+++||+.|+.++.+
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcC
Confidence 2346999999999987643
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.7e-36 Score=313.97 Aligned_cols=254 Identities=44% Similarity=0.776 Sum_probs=237.0
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
.....+.++|+||+|++++++.+.+.+.. +..++.|...|...++++||+||||||||++|+++|++++.+++.+++++
T Consensus 7 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 86 (285)
T 3h4m_A 7 EVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSE 86 (285)
T ss_dssp EEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHH
Confidence 34566789999999999999999998877 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
+...+.+.....++.+|..+....|+||||||+|.+..++.....+...+.+..+..++..++++....+++||+|||.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 87 LVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp GCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 99889999999999999999999999999999999998877655556677888999999999988888899999999999
Q ss_pred ccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCC
Q 005815 363 EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANI 442 (676)
Q Consensus 363 ~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~I 442 (676)
+.+|++++|++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.|++++||.++|++|...|.+++...|
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I 246 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYV 246 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSB
T ss_pred hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcC
Confidence 99999999999999999999999999999999999988888888899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 005815 443 TLKEIDDSIDRIVAG 457 (676)
Q Consensus 443 t~~di~~Ai~~v~~g 457 (676)
+.+|+.+|+.++...
T Consensus 247 ~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 247 TMDDFRKAVEKIMEK 261 (285)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998754
No 16
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.4e-35 Score=304.23 Aligned_cols=246 Identities=64% Similarity=1.110 Sum_probs=221.6
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
...+.++|+|++|++++++++++++..+..+..+...+...|+|++|+||||||||+|++++++.++.+++.+++.++..
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
.+.+.....++.+|+.+....|+++||||+|.++.++....+....+..+.+++++.++++......++++++||.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 88888888899999999888899999999999987665433334567778899999999998877789999999999999
Q ss_pred cccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 005815 366 DSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLK 445 (676)
Q Consensus 366 d~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~ 445 (676)
|++++|+|||++.+.++.|+.++|.+||+.+++...+..++++..++..++|++++||+++|++|...|.+++...|+.+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~ 247 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 247 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Confidence 99999999999999999999999999999999888888888899999999999999999999999999999888899999
Q ss_pred HHHHHH
Q 005815 446 EIDDSI 451 (676)
Q Consensus 446 di~~Ai 451 (676)
|+++|+
T Consensus 248 dl~~a~ 253 (254)
T 1ixz_A 248 DLEEAA 253 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999875
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=310.47 Aligned_cols=252 Identities=52% Similarity=0.888 Sum_probs=203.6
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHh
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFV 288 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~ 288 (676)
++++|+||+|++++++.+++++.++..++.|...|...++++||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCC-CChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccc
Q 005815 289 GVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGG-GNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDS 367 (676)
Q Consensus 289 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~ 367 (676)
+.+...++.+|..+....|+||||||+|.+..++.....+ .+.+....+++++..+++.....+++||++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 8888889999999999999999999999998766432111 133456788999999998877788999999999999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 005815 368 ALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDV--SLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLK 445 (676)
Q Consensus 368 aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~--dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~ 445 (676)
+++|+|||++.+.+++|+.++|.+|++.++....+..+. ....++..+.|++++||.+++++|...|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 999999999999999999999999999999877665443 357899999999999999999999999999888999999
Q ss_pred HHHHHHHHHHcCcCC
Q 005815 446 EIDDSIDRIVAGMEG 460 (676)
Q Consensus 446 di~~Ai~~v~~g~~~ 460 (676)
|+..|+.++..+..+
T Consensus 241 d~~~a~~~~~~~~~~ 255 (262)
T 2qz4_A 241 NFEYAVERVLAGTAK 255 (262)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccChhh
Confidence 999999999876543
No 18
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=9.9e-35 Score=302.40 Aligned_cols=258 Identities=62% Similarity=1.082 Sum_probs=224.2
Q ss_pred CCccccccccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 005815 193 PFGLGRSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 193 ~~~~~~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
.+.+.++..... ...+.++|+||+|++++++++++++..+..+..+...+...++|++|+||||||||+|++++++.++
T Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 20 AFSFTKSRARVL-TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp ------CCCCCB-CCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cccccccccccc-cCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 344555554333 3447899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCC
Q 005815 273 VPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSG 352 (676)
Q Consensus 273 ~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ 352 (676)
.+++.+++.++...+.+.....+..+|+.+....|+++|+||+|.++..+.........+..+.+++++.++++......
T Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 99 VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999888878778889999999988889999999999998665432233456678889999999998887777
Q ss_pred eEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005815 353 VIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAI 432 (676)
Q Consensus 353 ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~ 432 (676)
++++++||.|+.+|++++|++||++.+.++.|+.++|.+||+.+++...+..++++..++..++|++++||+++|++|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 258 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 258 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888889999999999999999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHH
Q 005815 433 LAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 433 ~A~r~~~~~It~~di~~Ai 451 (676)
.|.+++...|+.+|+++|+
T Consensus 259 ~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 259 LAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHTTCCSBCHHHHHHHT
T ss_pred HHHHhCCCCcCHHHHHHHh
Confidence 9998888899999999875
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.5e-35 Score=313.77 Aligned_cols=229 Identities=35% Similarity=0.633 Sum_probs=201.6
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
+..+.++++|+||+|++++++.|++.+.+ +..++.|.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34567889999999999999999998876 677776665 5667899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC-CCCCeEEEEecCC
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-GNSGVIVIAATNR 361 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-~~~~ViVIaaTN~ 361 (676)
+...+.|.....++.+|..++...|+||||||||.+..+++.+ .......++++++..++++. ...+++||++||+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 9999999999999999999999999999999999998766432 22334668899999999885 4668999999999
Q ss_pred cccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 005815 362 PEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438 (676)
Q Consensus 362 ~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 438 (676)
++.||++++| ||+..+.+++|+.++|.+|++.+++..... .+.++..++..+.||+++||.++|++|...|.++.
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999887644 56789999999999999999999999999888753
No 20
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=311.59 Aligned_cols=225 Identities=34% Similarity=0.640 Sum_probs=202.8
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechhHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSLSGSEFI 284 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-~~p~i~is~s~~~ 284 (676)
..++++|+||+|++++|+.|++.+.+ ++.++.|.. +..+++|+||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 45689999999999999999998876 788887764 35677999999999999999999999999 8999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-CCCeEEEEecCCcc
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-NSGVIVIAATNRPE 363 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~~~ 363 (676)
..+.|...+.++.+|..++..+|+||||||+|.+..++... ......+++++|+..++++.. ..+++||++||+++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999998877542 344567889999999999864 57899999999999
Q ss_pred cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 005815 364 ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRR 437 (676)
Q Consensus 364 ~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 437 (676)
.+|++++| ||+..+.+++|+.++|.+|++.+++..... .+.++..|++.+.||+|+||.++|++|...|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999877654 6678999999999999999999999999998765
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=5e-34 Score=308.10 Aligned_cols=227 Identities=35% Similarity=0.649 Sum_probs=194.4
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
....++++|+||+|++++++.|.+.+.+ +..++.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456789999999999999999998876 678887776 66778999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-CCCeEEEEecCCc
Q 005815 284 IEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-NSGVIVIAATNRP 362 (676)
Q Consensus 284 ~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~~ 362 (676)
...+.|.....++.+|..++...|+||||||+|.+..+++.+ .......++++|+..|+++.. ..+++||++||++
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 999999999999999999999999999999999998766432 344567788999999998864 5679999999999
Q ss_pred ccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 005815 363 EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRR 437 (676)
Q Consensus 363 ~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 437 (676)
+.+|++++| ||+..+.+++|+.++|.+||+.++...... .+.++..|++.+.||+|+||.++|++|.+.|.++
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999877643 5778999999999999999999999999999875
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.8e-33 Score=315.50 Aligned_cols=244 Identities=42% Similarity=0.725 Sum_probs=225.3
Q ss_pred CCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMF 287 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~ 287 (676)
..++|++|+|++++++.+++.+.. +.+++.|..+|...++++||+||||||||++|+++|++++.+|+.++|+++...+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 567899999999999999999987 7999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccc
Q 005815 288 VGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDS 367 (676)
Q Consensus 288 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~ 367 (676)
.|.....++.+|..|....|++|||||||.+..+++. ...+....++++|+..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~---~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS---CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc---ccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 9999999999999999999999999999999877653 2344567789999999999888889999999999999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCC-------
Q 005815 368 ALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKA------- 440 (676)
Q Consensus 368 aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~------- 440 (676)
+++++|||++.+.+++|+.++|.+||+.+++...+..+.++..++..+.||+++||.++|++|...|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999988888889999999999999999999999999999887643
Q ss_pred ----------CCCHHHHHHHHHHHH
Q 005815 441 ----------NITLKEIDDSIDRIV 455 (676)
Q Consensus 441 ----------~It~~di~~Ai~~v~ 455 (676)
.|+++||..|+..+.
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ 460 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSN 460 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHH
T ss_pred ccchhhcccCcCCHHHHHHHHHhCC
Confidence 378889988887664
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=2.4e-36 Score=311.81 Aligned_cols=249 Identities=62% Similarity=0.998 Sum_probs=218.0
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
+.+.++|+||+|++++++.+.+++.++..++.|..++...++|+||+||||||||++|+++|++++.|++.++++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCC-CCCCChHHHHHHHHHHHHhccCCCC-CCeEEEEecCCccc
Q 005815 287 FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFTGN-SGVIVIAATNRPEI 364 (676)
Q Consensus 287 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~~~~~~l~~LL~~ld~~~~~-~~ViVIaaTN~~~~ 364 (676)
+.+.+...++.+|+.+....|+||||||+|.+..++..+ ....+....+.+++|+..++++... .+++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 888887888899999999999999999999998665321 1112223345678889899887643 45999999999999
Q ss_pred ccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCH
Q 005815 365 LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITL 444 (676)
Q Consensus 365 Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~ 444 (676)
+|++++|+|||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.|++|+||.++|++|...|.+++...|+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~ 243 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 243 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCH
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCH
Confidence 99999999999999999999999999999999988877778888999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHH
Q 005815 445 KEIDDSIDRIV 455 (676)
Q Consensus 445 ~di~~Ai~~v~ 455 (676)
+|+.+|+.++.
T Consensus 244 ~~~~~a~~~~~ 254 (268)
T 2r62_A 244 QHLKEAVERGI 254 (268)
T ss_dssp HHHHTSCTTCC
T ss_pred HHHHHHHHHHh
Confidence 99999886653
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.2e-32 Score=305.83 Aligned_cols=227 Identities=33% Similarity=0.636 Sum_probs=193.2
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechh
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSLSGSE 282 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-~~p~i~is~s~ 282 (676)
....++++|+||+|++++++.|.+.+.+ +..+..|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3456789999999999999999998865 677776653 34567999999999999999999999999 89999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-CCCeEEEEecCC
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-NSGVIVIAATNR 361 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~ 361 (676)
+...+.|.....++.+|..++...|+||||||||.+..++... .......++++|+..|+++.. ..+++||++||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998776542 334456789999999998864 578999999999
Q ss_pred cccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 005815 362 PEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRR 437 (676)
Q Consensus 362 ~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~ 437 (676)
++.+|++++| ||+..+.+++|+.++|..|++.++...... .+.++..|+..+.||+|+||.++|++|...|.++
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999877653 5678999999999999999999999999988865
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=9.2e-31 Score=282.65 Aligned_cols=244 Identities=34% Similarity=0.602 Sum_probs=208.9
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+.++++|+||+|++++++.|.+.+.+ +..++.|...+ ..++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34678999999999999999999876 67777666554 56889999999999999999999999999999999999998
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC--CCCeEEEEecCCcc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG--NSGVIVIAATNRPE 363 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~--~~~ViVIaaTN~~~ 363 (676)
.+.|.....++.+|..+....|+||||||||.+..++.. +........+++++..+++... ..+++||++||.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 888988899999999999999999999999999876543 2244566788999999998753 45799999999999
Q ss_pred cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC----
Q 005815 364 ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG---- 438 (676)
Q Consensus 364 ~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~---- 438 (676)
.+++++++ ||+..+.+++|+.++|.+|++.++...... .+.++..+++.+.||+++||.++|++|...+.++-
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999998765533 45568999999999999999999999999888743
Q ss_pred --------CCCCCHHHHHHHHHHHHc
Q 005815 439 --------KANITLKEIDDSIDRIVA 456 (676)
Q Consensus 439 --------~~~It~~di~~Ai~~v~~ 456 (676)
...|+.+||..|+.++..
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCC
Confidence 357999999999998854
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=5.1e-31 Score=275.97 Aligned_cols=244 Identities=38% Similarity=0.606 Sum_probs=205.8
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
..+.++++|+||+|++++++.+.+.+.. +.+++.|...+ ..++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 4456789999999999999999998866 56677666554 457899999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC---CCeEEEEecC
Q 005815 284 IEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN---SGVIVIAATN 360 (676)
Q Consensus 284 ~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~---~~ViVIaaTN 360 (676)
...+.+.+...++.+|..+....|+||||||+|.+...+.... ........++|+..++++... .+++||++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 8888888888999999999999999999999999987664321 222345778888888887653 5799999999
Q ss_pred CcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 005815 361 RPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGK 439 (676)
Q Consensus 361 ~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~ 439 (676)
.++.+|+++++ ||+..+.+++|+.++|..|++.++...... .+.++..++..+.|++++||.++|++|...|.++..
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC
T ss_pred ChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999998765532 445689999999999999999999999999987642
Q ss_pred ------------CCCCHHHHHHHHHHH
Q 005815 440 ------------ANITLKEIDDSIDRI 454 (676)
Q Consensus 440 ------------~~It~~di~~Ai~~v 454 (676)
..|+.+||..|+.++
T Consensus 246 ~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 246 VEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp --------CCCCCCCCHHHHHHHTTSC
T ss_pred hhhcccccccccCCcCHHHHHHHHHHc
Confidence 579999999987643
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=281.05 Aligned_cols=245 Identities=38% Similarity=0.610 Sum_probs=200.6
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
++...++++|+||+|++.+++.+.+.+.. +..++.|...+ ..++++||+||||||||++|+++|.+++.+|+.+++++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 45567789999999999999999998876 55666666555 44789999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC--CCCeEEEEecC
Q 005815 283 FIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG--NSGVIVIAATN 360 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~--~~~ViVIaaTN 360 (676)
+...+.|.....++.+|..++...|+||||||||.+..++..+ ........++.|+..++++.. ..+++||++||
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999998765432 233456788899999988765 45799999999
Q ss_pred CcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc--
Q 005815 361 RPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRR-- 437 (676)
Q Consensus 361 ~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~-- 437 (676)
.++.+|++++| ||+..+.++.|+.++|.+|++.++...... .+.++..++..+.|+++++|..+++.|...+.++
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999999999998765432 3456899999999999999999999999999887
Q ss_pred ----------CCCCCCHHHHHHHHHHH
Q 005815 438 ----------GKANITLKEIDDSIDRI 454 (676)
Q Consensus 438 ----------~~~~It~~di~~Ai~~v 454 (676)
....|+.+||..++.++
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 34579999999998764
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=2.6e-33 Score=331.77 Aligned_cols=233 Identities=43% Similarity=0.790 Sum_probs=205.3
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
...+.++|+|++|++++|+.+.+.+.+ +..+..|..++...++++||+||||||||+||+++|++++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 345688999999999999999998876 6778888888999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
..|+|.....++.+|+.++...||||||||||.++.+++...+.......+++++||..||++....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999998877543222234567899999999999988889999999999999
Q ss_pred ccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 005815 365 LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438 (676)
Q Consensus 365 Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 438 (676)
||++++|||||++.|++++|+.++|.+||+.++++..+..++++..+++.+.|||++||.++|++|...|.++.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888899999999999999999999999999998765
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=1.6e-30 Score=273.34 Aligned_cols=229 Identities=18% Similarity=0.247 Sum_probs=161.2
Q ss_pred hCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHH----hhCCCeEEEEcCCcc
Q 005815 242 VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKA----KANSPCLVFIDEIDA 317 (676)
Q Consensus 242 ~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A----~~~~P~ILfIDEID~ 317 (676)
.+.+.|+|+|||||||||||++|+++|++++.+|+.++++++...++|.....++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999998 577899999999999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHhccCC-----------CCCCeEEEEecCCcccccccccCCCccceEEecCCCCH
Q 005815 318 VGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-----------GNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDI 386 (676)
Q Consensus 318 l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-----------~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~ 386 (676)
++.+++. ..........+.+.|+..+|+.. ...+++||+|||+++.+|++++|||||++.+.+ |+.
T Consensus 111 ~~~~~~~-~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~ 187 (293)
T 3t15_A 111 GAGRMGG-TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCH
T ss_pred hcCCCCC-CccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCH
Confidence 9875432 11112233456677888877432 456799999999999999999999999998874 899
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHH-------HHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcC
Q 005815 387 RGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANL-------MNEAAILAGRRGKANITLKEIDDSIDRIVAGME 459 (676)
Q Consensus 387 ~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~l-------v~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~ 459 (676)
++|.+|++.++... +++...++..+.||++++|..+ +.++.....+. +..+.+.. +++.+..
T Consensus 188 ~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~----~g~~~~~~---~~~~~~~ 256 (293)
T 3t15_A 188 EDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSG----TGIEKIGD---KLLNSFD 256 (293)
T ss_dssp HHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHH----TCSTTCHH---HHTSCSS
T ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHH---HHHcCCC
Confidence 99999999887643 5568889999999999988643 11111111111 11111211 2222222
Q ss_pred CCccccccchhhhHHHHHHHHHHHH
Q 005815 460 GTKMTDGKNKILVAYHEIGHAVCAT 484 (676)
Q Consensus 460 ~~~~~~~~~~~~~A~hEaghal~a~ 484 (676)
..+.....+..+.++||+||++++.
T Consensus 257 ~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 257 GPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp CSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccccHHHHHHHHHHHHHH
Confidence 2233344567788999999999875
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=2.2e-27 Score=281.05 Aligned_cols=245 Identities=42% Similarity=0.722 Sum_probs=221.3
Q ss_pred CCCCCcccccccchhhHHHHHHHHHH-hcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
..+.++|+||+|++++++.+.+.+.. +.+++.|..++...++++||+||||||||+||+++|++++.+++.++++++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34679999999999999999999987 89999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
.+.+.....++.+|+.+....|+++||||+|.+..+++. ........++++|+..++++....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 888999999999999999999999999999999876643 23445567889999999999888899999999999999
Q ss_pred cccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCC-----
Q 005815 366 DSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKA----- 440 (676)
Q Consensus 366 d~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~----- 440 (676)
|+++.++|||++.+.++.|+.++|.+|++.++++..+..+.++..++..+.|++++++..++++|...+.++...
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999999999999999999999999999999999888888888999999999999999999999999988775433
Q ss_pred ------------CCCHHHHHHHHHHH
Q 005815 441 ------------NITLKEIDDSIDRI 454 (676)
Q Consensus 441 ------------~It~~di~~Ai~~v 454 (676)
.++.+|+..++...
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~ 459 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHS
T ss_pred hhccchhhhhhhhhhhhhhhcccccc
Confidence 35666777776654
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=1.4e-25 Score=249.83 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=145.3
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSEFIE 285 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s~~~~ 285 (676)
.+...|++++|++++++.+.+++..+.. +...++++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999998876543 445678999999999999999999999999 9999999999999
Q ss_pred HHhhhhhHHHHHHHHHH---hhCCCeEEEEcCCccccccCCCCCCCCChH-HH---------------HHHHHHHHHhc-
Q 005815 286 MFVGVGASRVRDLFNKA---KANSPCLVFIDEIDAVGRQRGTGIGGGNDE-RE---------------QTLNQLLTEMD- 345 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~~-~~---------------~~l~~LL~~ld- 345 (676)
.++|.... ++..|..| +...||||||||+|.++.+|.....++... .. ...++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 788999999999999998875432111110 01 11233555554
Q ss_pred -cCCCCCCeEEEEecCCcccccccccCCCccce--EEecCCC--CHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcH
Q 005815 346 -GFTGNSGVIVIAATNRPEILDSALHRPGRFDR--QVSVGLP--DIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSG 420 (676)
Q Consensus 346 -~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~--~I~v~~P--d~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sg 420 (676)
+......++|+++||+++.+|+++.||||||+ .+.++.| +.++|.+|++.+.. .|++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 33344446667999999999999999999999 5666667 45778888765542 268899999999 9
Q ss_pred HHHHHHHHH
Q 005815 421 ADLANLMNE 429 (676)
Q Consensus 421 adL~~lv~~ 429 (676)
+||.++|+.
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999965
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.88 E-value=2.8e-22 Score=210.31 Aligned_cols=224 Identities=17% Similarity=0.257 Sum_probs=172.7
Q ss_pred cc-ccccchhhHHHHHHHHHHhcChhHHhhhCCCCC---CeEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEech
Q 005815 213 FD-DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIP---KGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSLSGS 281 (676)
Q Consensus 213 f~-dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p---~gvLL~GPpGTGKT~LArAlA~e~-------~~p~i~is~s 281 (676)
++ +|+|++++++.+.+++..+..+..+...|...+ .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 45 799999999999999998766777777765544 459999999999999999999987 3499999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
++...+.|.....++.+|..+ .++||||||+|.+...+.. .......++.|+..++.. ..++++|++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 998888888888889999887 4679999999999754432 122355777788888753 356889999986
Q ss_pred cc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh-------CCCCcHHHHHHHHH
Q 005815 362 PE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR-------TPGFSGADLANLMN 428 (676)
Q Consensus 362 ~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~-------t~G~sgadL~~lv~ 428 (676)
++ .++|++++ ||+.++.|++|+.+++.+|++.++...... .+..+..++.. .+..+++++.++++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 54 25799999 999999999999999999999998765543 22225556654 44457999999999
Q ss_pred HHHHHHHHc----CCCCCCHHHHH
Q 005815 429 EAAILAGRR----GKANITLKEID 448 (676)
Q Consensus 429 ~A~~~A~r~----~~~~It~~di~ 448 (676)
.|...+..+ ....++.+++.
T Consensus 257 ~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 257 RARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHh
Confidence 998766544 34566666654
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.87 E-value=5.9e-22 Score=212.95 Aligned_cols=253 Identities=20% Similarity=0.291 Sum_probs=167.9
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhHHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSEFIEM 286 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s~~~~~ 286 (676)
+..+|++++|++.+++.+..+...+... ...++++||+||||||||++|+++|++++ .|++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4456999999999999988888776543 23457899999999999999999999986 48999887663221
Q ss_pred H-------------------------------------------------hhhhhHHHHHHHHHHhh---------CCCe
Q 005815 287 F-------------------------------------------------VGVGASRVRDLFNKAKA---------NSPC 308 (676)
Q Consensus 287 ~-------------------------------------------------~g~~~~~vr~lF~~A~~---------~~P~ 308 (676)
+ .+.....++..|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 1 11123455666655432 1278
Q ss_pred EEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec-----------CCcccccccccCCCccce
Q 005815 309 LVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT-----------NRPEILDSALHRPGRFDR 377 (676)
Q Consensus 309 ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT-----------N~~~~Ld~aLlrpGRfd~ 377 (676)
||||||+|.+. ...++.|+..++... ..++++++. |.+..+++++++ ||..
T Consensus 192 vl~IDEi~~l~--------------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHMLD--------------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp EEEEESGGGSB--------------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred eEEEhhccccC--------------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 99999999994 235566777766433 235555554 347789999999 9965
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHc
Q 005815 378 QVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVA 456 (676)
Q Consensus 378 ~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~ 456 (676)
+.+++|+.+++.+|++.++...... .+..+..+++.+.+.+++++.++++.|...|..++...|+.+|+++++..+..
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBC
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Confidence 8999999999999999888654432 23347888998885689999999999999999999999999999999876432
Q ss_pred CcCCCccccccchhhhHHHHHHHHHHHHhCCC
Q 005815 457 GMEGTKMTDGKNKILVAYHEIGHAVCATLTPG 488 (676)
Q Consensus 457 g~~~~~~~~~~~~~~~A~hEaghal~a~~l~~ 488 (676)
.........+. ....-++|.++-.....+++
T Consensus 333 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 363 (368)
T 3uk6_A 333 ESRSTQYMKEY-QDAFLFNELKGETMDTSLEH 363 (368)
T ss_dssp HHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHh-hhhhhhhcCCccccccchhh
Confidence 11111111121 22234677776665555544
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=2.1e-20 Score=198.89 Aligned_cols=221 Identities=19% Similarity=0.237 Sum_probs=168.7
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS 281 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s 281 (676)
..|.++..+.+|++++|.+.+++.+...+..... ....+.++||+||||||||++|+++|++++.+|+.++++
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 3455677778999999999999999888776432 123456799999999999999999999999999999997
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC------------
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG------------ 349 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~------------ 349 (676)
.+. ....+...+.. ...+++|||||||.+. . ..++.|+..++...-
T Consensus 90 ~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~---~~~~~Ll~~l~~~~~~~~~~~~~~~~~ 147 (338)
T 3pfi_A 90 MIE------KSGDLAAILTN--LSEGDILFIDEIHRLS-----------P---AIEEVLYPAMEDYRLDIIIGSGPAAQT 147 (338)
T ss_dssp GCC------SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------H---HHHHHHHHHHHTSCC---------CCC
T ss_pred hcc------chhHHHHHHHh--ccCCCEEEEechhhcC-----------H---HHHHHHHHHHHhccchhhcccCccccc
Confidence 653 12233444432 3467899999999994 1 234455555543320
Q ss_pred ----CCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHH
Q 005815 350 ----NSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLA 424 (676)
Q Consensus 350 ----~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~ 424 (676)
..++++|++||....+++++++ ||+..+.+++|+.+++..+++.++...... .+..+..++..+.| +.+++.
T Consensus 148 ~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~ 224 (338)
T 3pfi_A 148 IKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIAL 224 (338)
T ss_dssp CCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHH
T ss_pred eecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHH
Confidence 1148999999999999999999 999999999999999999999988765543 23346778886655 789999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 425 NLMNEAAILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 425 ~lv~~A~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
++++.+...+...+...|+.+++..++...
T Consensus 225 ~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 225 RLLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 999999988888888899999999998764
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=5.9e-20 Score=193.73 Aligned_cols=221 Identities=21% Similarity=0.255 Sum_probs=164.6
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
++..+.+|++++|.+.+++.+.+.+...... ...+.++||+||||||||++|++++++++.+++.++++.+..
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 4556779999999999999998887654321 134568999999999999999999999999999999876532
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc-----CC--------CCCC
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FT--------GNSG 352 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~-----~~--------~~~~ 352 (676)
...+...|.. ....+++|||||+|.+. ...+..+..++....- .. ...+
T Consensus 77 ------~~~l~~~l~~-~~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ------PGDLAAILAN-SLEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------HHHHHHHHTT-TCCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------hHHHHHHHHH-hccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1222233322 12467899999999984 2223333333333210 00 1135
Q ss_pred eEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 005815 353 VIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAA 431 (676)
Q Consensus 353 ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~ 431 (676)
+++|++||.+..+++++.+ ||+.++.+++|+.+++..+++.++...... .+..+..++..+.| +++++.++++.+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 7899999999999999998 998899999999999999999988755433 23347888888876 6789999999998
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHH
Q 005815 432 ILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 432 ~~A~r~~~~~It~~di~~Ai~~v 454 (676)
..|...+...|+.+++..++...
T Consensus 216 ~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 216 DFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh
Confidence 87766677789999999888664
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=7.5e-20 Score=191.12 Aligned_cols=235 Identities=25% Similarity=0.365 Sum_probs=162.4
Q ss_pred cccccchhhHHHHHHHHHH-hcChhHHhh-hCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-HHhhh
Q 005815 214 DDVAGVDEAKQDFQEIVQF-LQTPEKFAA-VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-MFVGV 290 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~-l~~~~~~~~-~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-~~~g~ 290 (676)
++|+|++++++.+...+.. +........ .....+.++||+||||||||++|+++|+.++.+++.++++++.. .+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4589999999999877754 111110000 01235678999999999999999999999999999999998865 44443
Q ss_pred h-hHHHHHHHHHH-----hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC--------CCCCeEEE
Q 005815 291 G-ASRVRDLFNKA-----KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT--------GNSGVIVI 356 (676)
Q Consensus 291 ~-~~~vr~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~--------~~~~ViVI 356 (676)
. ...+++++..+ ....++||||||+|.+...... .+.+.....+.+.|+..+++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 2 33466666532 1123679999999999765432 1222333445677888777542 23468888
Q ss_pred Ee----cCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHh-------------cCC--CCCccccHHHHHHhCC-
Q 005815 357 AA----TNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHS-------------NNK--KLDKDVSLSVIATRTP- 416 (676)
Q Consensus 357 aa----TN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l-------------~~~--~l~~d~dl~~La~~t~- 416 (676)
++ ++.+..+++++++ ||+..+.+++|+.+++.+|++..+ ... .++ +..+..+++.++
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~~ 249 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFT-TDAVKKIAEAAFR 249 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEEC-HHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccC-HHHHHHHHHHhhh
Confidence 88 5678889999998 999999999999999999998321 111 122 233677777662
Q ss_pred ------CCcHHHHHHHHHHHHHHHHHc-----CCC-CCCHHHHHHHHHH
Q 005815 417 ------GFSGADLANLMNEAAILAGRR-----GKA-NITLKEIDDSIDR 453 (676)
Q Consensus 417 ------G~sgadL~~lv~~A~~~A~r~-----~~~-~It~~di~~Ai~~ 453 (676)
+.+.+++.++++.+...+..+ +.. .|+.+|+++++..
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 468899999999877543322 111 4999999988754
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.81 E-value=2e-19 Score=185.98 Aligned_cols=224 Identities=19% Similarity=0.253 Sum_probs=149.6
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-HHhhhh
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-MFVGVG 291 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-~~~g~~ 291 (676)
...++|.+++.+.+......+. ..+...+...++++||+||||||||++|+++|.+.+.||+.+++++... ...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4568898887766665322221 1122234566788999999999999999999999999999998875221 111222
Q ss_pred hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-CCCeEEEEecCCcccccc-cc
Q 005815 292 ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-NSGVIVIAATNRPEILDS-AL 369 (676)
Q Consensus 292 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-~~~ViVIaaTN~~~~Ld~-aL 369 (676)
...++.+|..+....+++|||||+|.+...+..+ .......++.|...+++... ..+++||++||.++.+++ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhh
Confidence 3567889999888889999999999997554321 11224456666666766543 346889999999999988 45
Q ss_pred cCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCC----cHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 005815 370 HRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGF----SGADLANLMNEAAILAGRRGKANITLK 445 (676)
Q Consensus 370 lrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~----sgadL~~lv~~A~~~A~r~~~~~It~~ 445 (676)
.+ ||+..+.+++++ +|.+|.........+ .+.++..+++.+.|+ +.+++.++++.|...+ .....+
T Consensus 186 ~~--rf~~~i~~p~l~--~r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~~~~ 255 (272)
T 1d2n_A 186 LN--AFSTTIHVPNIA--TGEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEYRVR 255 (272)
T ss_dssp TT--TSSEEEECCCEE--EHHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGGHHH
T ss_pred hc--ccceEEcCCCcc--HHHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHHHHH
Confidence 55 999998885444 444444444333334 344588899999887 5677777776664322 334445
Q ss_pred HHHHHHH
Q 005815 446 EIDDSID 452 (676)
Q Consensus 446 di~~Ai~ 452 (676)
++..++.
T Consensus 256 ~~~~~l~ 262 (272)
T 1d2n_A 256 KFLALLR 262 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=1e-19 Score=206.68 Aligned_cols=223 Identities=22% Similarity=0.281 Sum_probs=149.6
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCC-CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH---
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE--- 285 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~-~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~--- 285 (676)
..-.+|++|++++++.+.+.+..- .+... .+..++|+||||||||++|+++|+.++.++..++++.+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~-------~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQ-------KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHH-------HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH-------HhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 345678999999999987765431 11111 3456999999999999999999999999999998876543
Q ss_pred ------HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC---------
Q 005815 286 ------MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN--------- 350 (676)
Q Consensus 286 ------~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~--------- 350 (676)
.++|.....+...|..+....| ||||||||.+...+. ....+.|+..||.....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCe
Confidence 4566666667778888766666 999999999965431 12456677777643211
Q ss_pred ----CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcC-----CCCC------ccccHHHHHH-h
Q 005815 351 ----SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN-----KKLD------KDVSLSVIAT-R 414 (676)
Q Consensus 351 ----~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~-----~~l~------~d~dl~~La~-~ 414 (676)
.++++|+|||.++.++++|++ ||+ .|.++.|+.+++.+|++.++.. ..+. .+..+..++. .
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 568999999999999999999 995 7999999999999999987622 1111 1223555554 4
Q ss_pred CCCCcHHHHHHHHHHHHHH----HHHc--CCCCCCHHHHHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAIL----AGRR--GKANITLKEIDDSIDR 453 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~----A~r~--~~~~It~~di~~Ai~~ 453 (676)
+...+.++|++.+..+... +.+. +...|+.+++++++..
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 5445566666555544444 3333 3446999999988743
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.79 E-value=1.3e-18 Score=192.88 Aligned_cols=222 Identities=18% Similarity=0.300 Sum_probs=156.3
Q ss_pred CCCCcccccc-cchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEech
Q 005815 208 NTGVTFDDVA-GVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSGS 281 (676)
Q Consensus 208 ~~~~~f~dv~-G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~s 281 (676)
++..+|++++ |..... ....+......+ + . +.+++|+||||||||+|++++++++ +.+++++++.
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHP------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHST------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCC------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4566899987 644432 222222223222 1 2 5679999999999999999999988 8999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
++...+...........|.......|+||||||+|.+..+ ...+ ..|+..++.....+..+||++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q---~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQ---TELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHH---HHHHHHHHHHHTTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHH---HHHHHHHHHHHHCCCeEEEEECCC
Confidence 9876655443322223344433337899999999999532 1222 233333333333445566666666
Q ss_pred ccc---ccccccCCCccc--eEEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 005815 362 PEI---LDSALHRPGRFD--RQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 362 ~~~---Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A 434 (676)
+.. +++++++ ||. ..+.+++|+.++|.+|++..+.... +++++ +..|+..+.| +.+++.++++.+...|
T Consensus 238 ~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 665 7889988 886 7899999999999999998876433 44443 7889998876 8999999999999988
Q ss_pred HHcCCCCCCHHHHHHHHHHHH
Q 005815 435 GRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 435 ~r~~~~~It~~di~~Ai~~v~ 455 (676)
...+ ..|+.+++.+++....
T Consensus 314 ~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSS-SCCCHHHHHHHTSTTT
T ss_pred HHhC-CCCCHHHHHHHHHHHh
Confidence 7665 4699999999886543
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=7.7e-19 Score=189.36 Aligned_cols=221 Identities=24% Similarity=0.273 Sum_probs=152.7
Q ss_pred cccchhhHHHHHHHHHHhcChhHHh---hhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH-Hhhhh
Q 005815 216 VAGVDEAKQDFQEIVQFLQTPEKFA---AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM-FVGVG 291 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~l~~~~~~~---~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~-~~g~~ 291 (676)
|+|++++++.+...+.......... ......+.++||+||||||||++|+++|..++.||+.++++++... +.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 6999999999988775321111100 0111246789999999999999999999999999999999988743 67765
Q ss_pred -hHHHHHHHHHH----hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC------------------
Q 005815 292 -ASRVRDLFNKA----KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT------------------ 348 (676)
Q Consensus 292 -~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~------------------ 348 (676)
...++.+|..+ ....++||||||+|.+...+.....+.+...+.+++.||..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55667777765 3345789999999999877654433334444558889999888431
Q ss_pred -CCCCeEEEEecCCc----------c------------------------------c-----ccccccCCCccceEEecC
Q 005815 349 -GNSGVIVIAATNRP----------E------------------------------I-----LDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 349 -~~~~ViVIaaTN~~----------~------------------------------~-----Ld~aLlrpGRfd~~I~v~ 382 (676)
..+++++|+++|.. . . ++|+|+. ||+..+.+.
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 23445666665542 0 1 5677776 999999999
Q ss_pred CCCHHHHHHHHHH----Hh-------cCCCCC---ccccHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHcC
Q 005815 383 LPDIRGREQILKV----HS-------NNKKLD---KDVSLSVIAT--RTPGFSGADLANLMNEAAILAGRRG 438 (676)
Q Consensus 383 ~Pd~~~R~~IL~~----~l-------~~~~l~---~d~dl~~La~--~t~G~sgadL~~lv~~A~~~A~r~~ 438 (676)
+|+.+++.+|+.. ++ ...... .+..++.|+. ..+.++.++|+++++.+...+..+-
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999999875 21 111211 2222566664 3456677899999999887776553
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.78 E-value=1.7e-18 Score=183.19 Aligned_cols=209 Identities=19% Similarity=0.251 Sum_probs=144.1
Q ss_pred ccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 005815 201 AKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 (676)
Q Consensus 201 ~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~ 280 (676)
...|.+++.+.+|++++|++++++.+.+.+. ....|..+|++||||||||++++++|++++.+++++++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4568888999999999999999988887765 23456778999999999999999999999999999998
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHhhC-----CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 281 SEFIEMFVGVGASRVRDLFNKAKAN-----SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 281 s~~~~~~~g~~~~~vr~lF~~A~~~-----~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
++.. ...++..+...... .++||||||+|.+.. .. ..+.|+..++... .++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~---~~~~L~~~le~~~--~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AE---SQRHLRSFMEAYS--SNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HH---HHHHHHHHHHHHG--GGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HH---HHHHHHHHHHhCC--CCcEE
Confidence 7742 23444444443222 568999999999941 12 3344555554332 45788
Q ss_pred EEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHh-------cC--CCCCccccHHHHHHhCCCCcHHHHHHH
Q 005815 356 IAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHS-------NN--KKLDKDVSLSVIATRTPGFSGADLANL 426 (676)
Q Consensus 356 IaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l-------~~--~~l~~d~dl~~La~~t~G~sgadL~~l 426 (676)
|++||.+..+++++.+ || ..+.+++|+.++|.+|++.+. .. ..+++...+..++..+.| +.+++.+.
T Consensus 140 I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHH
T ss_pred EEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHH
Confidence 9999999999999999 98 479999999999877655432 22 223331347888888765 34444455
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHH
Q 005815 427 MNEAAILAGRRGKANITLKEIDDSID 452 (676)
Q Consensus 427 v~~A~~~A~r~~~~~It~~di~~Ai~ 452 (676)
+..+. ....|+.+++..++.
T Consensus 216 L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 216 LDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHG------GGTCBCC--------
T ss_pred HHHHh------ccCCCCHHHHHHHhC
Confidence 54443 234588888877654
No 42
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.78 E-value=5.2e-20 Score=202.77 Aligned_cols=170 Identities=22% Similarity=0.304 Sum_probs=80.3
Q ss_pred cccccchhhHHHHHHHHHH-hcChhHHhhhCCC-CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH-HHhhh
Q 005815 214 DDVAGVDEAKQDFQEIVQF-LQTPEKFAAVGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE-MFVGV 290 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~-l~~~~~~~~~g~~-~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~-~~~g~ 290 (676)
++|+|++++|+.+...+.. ++.+..+..+... .++++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4789999999999887754 3333333333332 4688999999999999999999999999999999999988 58885
Q ss_pred -hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEe-cCCccccccc
Q 005815 291 -GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAA-TNRPEILDSA 368 (676)
Q Consensus 291 -~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa-TN~~~~Ld~a 368 (676)
.++.++.+|..+... +++||+|.+.... ......+++++|+.+||++....++ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788899999998764 4589988875322 1233467999999999999776654 454 9999999999
Q ss_pred ccCCCccceEEecCCCCHH-HHHHHHHH
Q 005815 369 LHRPGRFDRQVSVGLPDIR-GREQILKV 395 (676)
Q Consensus 369 LlrpGRfd~~I~v~~Pd~~-~R~~IL~~ 395 (676)
|+||||||+.|++++|+.. .|.+|+..
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ----------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 9999999999999999987 78888753
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.78 E-value=3.3e-18 Score=183.54 Aligned_cols=224 Identities=17% Similarity=0.214 Sum_probs=162.5
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEech
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGS 281 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s 281 (676)
..+++++|.++..+.+.+.+.... ....+++++|+||||||||++++++++++ +.+++++++.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 455899999998887776553321 12346689999999999999999999988 8899999986
Q ss_pred hHH------HHHh----------hhhhHH-HHHHHHHHhh-CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHH
Q 005815 282 EFI------EMFV----------GVGASR-VRDLFNKAKA-NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 343 (676)
Q Consensus 282 ~~~------~~~~----------g~~~~~-vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ 343 (676)
... .... +..... ...++..... ..|++|||||+|.+...+ ..+..+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 422 1111 111222 3344444433 348899999999995321 134677778877
Q ss_pred hccCCCCCCeEEEEecCCc---ccccccccCCCccce-EEecCCCCHHHHHHHHHHHhcC----CCCCccccHHHHHHhC
Q 005815 344 MDGFTGNSGVIVIAATNRP---EILDSALHRPGRFDR-QVSVGLPDIRGREQILKVHSNN----KKLDKDVSLSVIATRT 415 (676)
Q Consensus 344 ld~~~~~~~ViVIaaTN~~---~~Ld~aLlrpGRfd~-~I~v~~Pd~~~R~~IL~~~l~~----~~l~~d~dl~~La~~t 415 (676)
++......++++|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.++.. ..++++ .+..+++.+
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~ 235 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAALA 235 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 7654324578999999987 678889988 8875 8999999999999999988753 233333 367777777
Q ss_pred C---CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 416 P---GFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 416 ~---G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
. | +++.+.++++.|...|..++...|+.+|+..++....
T Consensus 236 ~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 236 AREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 6 6 6788889999999999888889999999999988763
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.77 E-value=8.1e-18 Score=178.23 Aligned_cols=219 Identities=19% Similarity=0.270 Sum_probs=149.6
Q ss_pred CCCCcccccc-cchh--hHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 005815 208 NTGVTFDDVA-GVDE--AKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS 281 (676)
Q Consensus 208 ~~~~~f~dv~-G~~~--~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s 281 (676)
++..+|++++ |... +...+..+ +..+ ...+.+++|+||||||||++++++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~---~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEA---LENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHH---HHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHH---HhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3567899997 5333 33333332 2222 1235679999999999999999999998 8999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 282 EFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 282 ~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
++...+.+.........|.... ..+++|||||+|.+..+ ...++.+..++..+ ...+..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~---~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTL---YLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC---------HHHHHHHHHHHHHH---HHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC---------hHHHHHHHHHHHHH---HHCCCeEEEEecCC
Confidence 9877665443332223333332 24789999999999521 12233333333322 23345677777777
Q ss_pred cc---cccccccCCCccc--eEEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHH-
Q 005815 362 PE---ILDSALHRPGRFD--RQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMNEAAIL- 433 (676)
Q Consensus 362 ~~---~Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~- 433 (676)
+. .+++++.+ ||+ ..+.+++ +.+++.+|++.++.... ++++ .+..++..+ | +.+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~-~l~~l~~~~-g-~~r~l~~~l~~~~~~~ 215 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKE-VIDYLLENT-K-NVREIEGKIKLIKLKG 215 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHC-S-SHHHHHHHHHHHHHHC
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhC-C-CHHHHHHHHHHHHHcC
Confidence 76 58899988 886 6899999 99999999999887544 3333 378899998 4 789999998887765
Q ss_pred --HHH-cCCCCC-CHHHHHHHHHHHH
Q 005815 434 --AGR-RGKANI-TLKEIDDSIDRIV 455 (676)
Q Consensus 434 --A~r-~~~~~I-t~~di~~Ai~~v~ 455 (676)
+.. .+...| +.+++.+++....
T Consensus 216 ~~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 216 FEGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCHHHHHHHHHHHh
Confidence 111 223457 8888888887654
No 45
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.4e-17 Score=163.76 Aligned_cols=207 Identities=20% Similarity=0.226 Sum_probs=149.0
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEE
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS 277 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~ 277 (676)
.|.++..+.+|++++|.+++++.+.+.+.. . .+.+++|+||||||||++++++++++ ..+++.
T Consensus 6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~---~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER---K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp CHHHHTSCSSGGGCCSCHHHHHHHHHHHHT---T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred hHHHhcCCCCHHHHcCcHHHHHHHHHHHhC---C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 345567788999999999998888776642 1 12349999999999999999999875 467888
Q ss_pred EechhHHHHHhhhhhHHHHHHHHHHh------hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCC
Q 005815 278 LSGSEFIEMFVGVGASRVRDLFNKAK------ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNS 351 (676)
Q Consensus 278 is~s~~~~~~~g~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~ 351 (676)
+++++.... ..++..+.... ...+++|||||+|.+.. . ..+.|+..++.. ..
T Consensus 74 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~---~~~~l~~~l~~~--~~ 131 (226)
T 2chg_A 74 MNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------D---AQAALRRTMEMY--SK 131 (226)
T ss_dssp EETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------H---HHHHHHHHHHHT--TT
T ss_pred eccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------H---HHHHHHHHHHhc--CC
Confidence 887653221 12222222221 25688999999999842 2 233444444432 34
Q ss_pred CeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005815 352 GVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEA 430 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A 430 (676)
++.+|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...... .+..+..+++.+.| +.+.+.++++.+
T Consensus 132 ~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~ 207 (226)
T 2chg_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (226)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 67888999999999999998 887 89999999999999999887643322 23346778887766 677777777776
Q ss_pred HHHHHHcCCCCCCHHHHHHHHH
Q 005815 431 AILAGRRGKANITLKEIDDSID 452 (676)
Q Consensus 431 ~~~A~r~~~~~It~~di~~Ai~ 452 (676)
...+ ..|+.+|+++++.
T Consensus 208 ~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 208 AAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHTC-----SCBCHHHHHHHHH
T ss_pred HhcC-----ceecHHHHHHHhc
Confidence 6443 6899999998874
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=3.2e-18 Score=193.33 Aligned_cols=233 Identities=18% Similarity=0.251 Sum_probs=151.3
Q ss_pred cccccccccCCCCCcccccccchhhHHHHHHHHHHhcC--hhHHhhhCC---CCCCeEEEEcCCCChHHHHHHHHHHhcC
Q 005815 198 RSKAKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQT--PEKFAAVGA---KIPKGVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 198 ~s~~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~--~~~~~~~g~---~~p~gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
.....+|++++++.+|+||+|++++++.+.+.+..... +..|+..|. ..++++||+||||||||++|+++|++++
T Consensus 23 ~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 23 MASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp ---CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34456899999999999999999999988877654221 122223333 2567899999999999999999999999
Q ss_pred CCEEEEechhHHHHHhhhhh-------HHHHHHHHHH-----hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHH
Q 005815 273 VPFFSLSGSEFIEMFVGVGA-------SRVRDLFNKA-----KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQL 340 (676)
Q Consensus 273 ~p~i~is~s~~~~~~~g~~~-------~~vr~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~L 340 (676)
.+++.++++++......... ..+..+|..+ ....++||||||+|.+.... .. .++.|
T Consensus 103 ~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~---~l~~L 171 (516)
T 1sxj_A 103 YDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RG---GVGQL 171 (516)
T ss_dssp CEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TT---HHHHH
T ss_pred CCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HH---HHHHH
Confidence 99999999876543221100 0123344433 23568999999999996321 11 23344
Q ss_pred HHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC--CCCccccHHHHHHhCCCC
Q 005815 341 LTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK--KLDKDVSLSVIATRTPGF 418 (676)
Q Consensus 341 L~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~--~l~~d~dl~~La~~t~G~ 418 (676)
+..++. ....+++|+++.....+++ +. |+...+.|++|+.+++.+++...+... .++++. +..|++.+.|
T Consensus 172 ~~~l~~--~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~-l~~la~~s~G- 243 (516)
T 1sxj_A 172 AQFCRK--TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTTRG- 243 (516)
T ss_dssp HHHHHH--CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHTTT-
T ss_pred HHHHHh--cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-
Confidence 444432 2234555555544444543 43 456799999999999999998776543 344443 8889988865
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 419 SGADLANLMNEAAILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 419 sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
+.+.+.+++. ..+. +...|+.+++.+++...
T Consensus 244 diR~~i~~L~---~~~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 244 DIRQVINLLS---TIST--TTKTINHENINEISKAW 274 (516)
T ss_dssp CHHHHHHHHT---HHHH--HSSCCCTTHHHHHHHHH
T ss_pred cHHHHHHHHH---HHHh--cCCCCchHHHHHHHHhh
Confidence 3444444443 3333 34678888888776543
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=5.6e-18 Score=187.94 Aligned_cols=207 Identities=22% Similarity=0.280 Sum_probs=151.5
Q ss_pred cCCCCCcccccccchhhH---HHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 206 EPNTGVTFDDVAGVDEAK---QDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k---~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
+...+.+|++++|+++++ ..|...+.. . ...++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~---~---------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEA---G---------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHH---T---------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHc---C---------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 345667999999999998 455544432 1 1257999999999999999999999999999998754
Q ss_pred HHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEe
Q 005815 283 FIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAA 358 (676)
Q Consensus 283 ~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa 358 (676)
. +.+.++.+|..+.. ..++||||||||.+... ..+.|+..++. ..+++|++
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~a 140 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGA 140 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEE
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEec
Confidence 2 23456666666543 46789999999999422 23456666653 44677776
Q ss_pred c--CCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC-------CCC-ccccHHHHHHhCCCCcHHHHHHHHH
Q 005815 359 T--NRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK-------KLD-KDVSLSVIATRTPGFSGADLANLMN 428 (676)
Q Consensus 359 T--N~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~-------~l~-~d~dl~~La~~t~G~sgadL~~lv~ 428 (676)
| |....+++++++ |+. ++.+++|+.+++..+++.++... .+. .+..+..|+..+.| +.+++.++++
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le 216 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLE 216 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 6 444578999999 885 78899999999999999988652 111 23347888888665 7889999999
Q ss_pred HHHHHHHHc--CCCCCCHHHHHHHHHH
Q 005815 429 EAAILAGRR--GKANITLKEIDDSIDR 453 (676)
Q Consensus 429 ~A~~~A~r~--~~~~It~~di~~Ai~~ 453 (676)
.+...+... +...||.+++.+++.+
T Consensus 217 ~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 217 MMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHhcccccCCCCccCHHHHHHHHhh
Confidence 998776433 4467999999988754
No 48
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.74 E-value=6.8e-17 Score=160.39 Aligned_cols=208 Identities=20% Similarity=0.296 Sum_probs=151.3
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC--------
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------- 274 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p-------- 274 (676)
.+.++..+.+|++++|.+..++.+.+.+.. ...++.++|+||||+|||+++++++++++..
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 455677788899999999999888776643 1234579999999999999999999887431
Q ss_pred ----------------EEEEechhHHHHHhhhhhHHHHHHHHHHh----hCCCeEEEEcCCccccccCCCCCCCCChHHH
Q 005815 275 ----------------FFSLSGSEFIEMFVGVGASRVRDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGIGGGNDERE 334 (676)
Q Consensus 275 ----------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~ 334 (676)
++.++.... .....++.++..+. ...|.+|||||+|.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~ 140 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------R 140 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTCG------GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------H
T ss_pred cccHHHHHHhccCCcceEEecCccc------ccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------H
Confidence 233332210 12233555555432 2357899999999983 1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 005815 335 QTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIAT 413 (676)
Q Consensus 335 ~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~ 413 (676)
..++.|+..++.. ..++.+|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++...... .+..+..+++
T Consensus 141 ~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 215 (250)
T 1njg_A 141 HSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 215 (250)
T ss_dssp HHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 2455666666543 3568899999999999999888 75 789999999999999999888654332 2334788999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 414 RTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 414 ~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
.+.| +++.+.++++.|... +...|+.+++++++
T Consensus 216 ~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 216 AAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 9977 789999999888533 34589999998874
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.74 E-value=2.8e-17 Score=164.53 Aligned_cols=209 Identities=14% Similarity=0.140 Sum_probs=140.6
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE 285 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~ 285 (676)
+..+|++++|.+...+.+..+...... ..+++++|+||||||||++++++++++ +.++++++++++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 457899999843222233332222221 135689999999999999999999887 47899999988765
Q ss_pred HHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCe-EEEEecCCcc-
Q 005815 286 MFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGV-IVIAATNRPE- 363 (676)
Q Consensus 286 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~V-iVIaaTN~~~- 363 (676)
.+.. .+.. ...+++|||||+|.+... ......+..++... .....+ +|+++++.++
T Consensus 94 ~~~~--------~~~~--~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~---~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 94 ISTA--------LLEG--LEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRV---AEQKRGSLIVSASASPME 151 (242)
T ss_dssp SCGG--------GGTT--GGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHH---HHHCSCEEEEEESSCTTT
T ss_pred HHHH--------HHHh--ccCCCEEEEeccccccCC---------HHHHHHHHHHHHHH---HHcCCCeEEEEcCCCHHH
Confidence 4311 1111 134689999999998421 11223333333332 223334 5555554454
Q ss_pred --cccccccCCCccc--eEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 005815 364 --ILDSALHRPGRFD--RQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRG 438 (676)
Q Consensus 364 --~Ld~aLlrpGRfd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~ 438 (676)
.+++.+.+ ||. ..+.+++|+.+++.+++..++...... .+..+..+++.+.| +.+++.++++.+...|..++
T Consensus 152 ~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~ 228 (242)
T 3bos_A 152 AGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ 228 (242)
T ss_dssp TTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC
Confidence 35577877 776 899999999999999999988654432 23337788888876 88999999999998886554
Q ss_pred CCCCCHHHHHHHHH
Q 005815 439 KANITLKEIDDSID 452 (676)
Q Consensus 439 ~~~It~~di~~Ai~ 452 (676)
..|+.+++++++.
T Consensus 229 -~~It~~~v~~~l~ 241 (242)
T 3bos_A 229 -RKLTIPFVKEMLR 241 (242)
T ss_dssp -CCCCHHHHHHHHT
T ss_pred -CCCcHHHHHHHhh
Confidence 5699999998863
No 50
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.74 E-value=2e-16 Score=168.88 Aligned_cols=218 Identities=21% Similarity=0.346 Sum_probs=160.0
Q ss_pred ccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 205 MEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 205 ~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
+....+.+|++++|.+.+++.+...+..-..+ ...+..++|+||||+|||+|++++|+++++++...+++.+.
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 34455668999999998888877665432111 13456799999999999999999999999998888776542
Q ss_pred HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC-------C--------
Q 005815 285 EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-------G-------- 349 (676)
Q Consensus 285 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-------~-------- 349 (676)
. ...+..++.. ...++|+||||+|.+.. ..+..+ +..++.+. .
T Consensus 89 ~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~ 146 (334)
T 1in4_A 89 K------QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELL---YSAIEDFQIDIMIGKGPSAKSIRI 146 (334)
T ss_dssp S------HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHH---HHHHHTSCCCC-------------
T ss_pred C------HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHH---HHHHHhcccceeeccCcccccccc
Confidence 1 1223333332 23467999999999842 122223 22232211 0
Q ss_pred -CCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHH
Q 005815 350 -NSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLM 427 (676)
Q Consensus 350 -~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv 427 (676)
-..+.++++|+.+..|++.+++ ||...+.+++|+.+++.+|++...+..... ++..+..+++.+.| +++++.+++
T Consensus 147 ~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll 223 (334)
T 1in4_A 147 DIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLT 223 (334)
T ss_dssp --CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHH
T ss_pred cCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHH
Confidence 0236778899999999999999 999899999999999999999887644433 23337889998887 678999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 428 NEAAILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 428 ~~A~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
+.+...|..++...|+.+++++++...
T Consensus 224 ~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 224 KRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 999999888888899999999999886
No 51
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.74 E-value=2.8e-17 Score=174.53 Aligned_cols=214 Identities=18% Similarity=0.151 Sum_probs=149.2
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH--HHHHh
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF--IEMFV 288 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~--~~~~~ 288 (676)
-.+++++|++++++.+...+.. .+++||+||||||||++|+++|+.++.+++.+++... .....
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3567899999998877654432 2479999999999999999999999999999987321 11111
Q ss_pred hhhhHH-HHHHHHHHhhCC---CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC---------CCCCCeEE
Q 005815 289 GVGASR-VRDLFNKAKANS---PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF---------TGNSGVIV 355 (676)
Q Consensus 289 g~~~~~-vr~lF~~A~~~~---P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~---------~~~~~ViV 355 (676)
|...-. ....|. .... .+||||||+|.+. . ...+.|+..|+.. ....+++|
T Consensus 90 g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~-----------~---~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 90 GTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP-----------A---KVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEEETTTTEEE--EEECTTCSSEEEEETGGGSC-----------H---HHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred CceeecCCCCceE--eccCcccccEEEEEccccCC-----------H---HHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 110000 000000 0111 3799999999983 2 2344455544421 12346788
Q ss_pred EEecCCcc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC------------------------CCccc
Q 005815 356 IAATNRPE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK------------------------LDKDV 406 (676)
Q Consensus 356 IaaTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~------------------------l~~d~ 406 (676)
|+|+|..+ .+++++++ ||+.++.++.|+.+++.+|++.++.... ++++
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~- 230 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES- 230 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH-
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH-
Confidence 89988554 38999999 9999999999999999999998876431 1111
Q ss_pred cHHHHHHhC-------------------CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcC
Q 005815 407 SLSVIATRT-------------------PGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAG 457 (676)
Q Consensus 407 dl~~La~~t-------------------~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g 457 (676)
.+..+++.. .|.|.+.+.++++.|...|..+++..|+.+|+.+++..+...
T Consensus 231 ~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 231 LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 133333321 256899999999999999999999999999999999888654
No 52
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=5.2e-17 Score=174.85 Aligned_cols=212 Identities=23% Similarity=0.316 Sum_probs=154.7
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----------CCCEEEEech
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----------GVPFFSLSGS 281 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----------~~p~i~is~s 281 (676)
+++++|.++..+.+.+.+..... ...+++++|+||||||||++++++++++ +.+++.+++.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 48899999999988877755322 1346689999999999999999999987 8999999987
Q ss_pred hHH-HH------Hh-----------hhh-hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHH-HHHHH
Q 005815 282 EFI-EM------FV-----------GVG-ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQT-LNQLL 341 (676)
Q Consensus 282 ~~~-~~------~~-----------g~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~-l~~LL 341 (676)
... .. .. +.. ...+..++..+... +++|||||+|.+..... ... +..|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~----------~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG----------GDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT----------SHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC----------CceeHHHHh
Confidence 643 11 11 111 12234444444433 34999999999964321 123 44554
Q ss_pred HHhccCCCCCCeEEEEecCCc---ccccccccCCCccceEEecCCCCHHHHHHHHHHHhcC----CCCCccccHHHHHHh
Q 005815 342 TEMDGFTGNSGVIVIAATNRP---EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN----KKLDKDVSLSVIATR 414 (676)
Q Consensus 342 ~~ld~~~~~~~ViVIaaTN~~---~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~----~~l~~d~dl~~La~~ 414 (676)
... .++.+|++||.+ +.+++++.+ ||+..+.+++|+.++..+|++.++.. ..++++ .+..+++.
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDE-ILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSH-HHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHH-HHHHHHHH
Confidence 432 578999999987 678889888 88889999999999999999988753 233333 36777777
Q ss_pred CC---CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 415 TP---GFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 415 t~---G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
+. | +.+.+.++++.|...|. +...|+.+|+..++.+..
T Consensus 231 ~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 231 SAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 65 4 56777889999988775 567899999999988764
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.73 E-value=7.2e-17 Score=171.71 Aligned_cols=219 Identities=19% Similarity=0.240 Sum_probs=142.4
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--------------
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------------- 273 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-------------- 273 (676)
.++.+|++++|++.+++.+.... + .+ .+.++||+||||||||++|+++++.++.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 45678999999999876543221 1 11 1346999999999999999999998752
Q ss_pred -------------------CEEEEechhHHHHHhhhhhHHHHHHHHHH---------hhCCCeEEEEcCCccccccCCCC
Q 005815 274 -------------------PFFSLSGSEFIEMFVGVGASRVRDLFNKA---------KANSPCLVFIDEIDAVGRQRGTG 325 (676)
Q Consensus 274 -------------------p~i~is~s~~~~~~~g~~~~~vr~lF~~A---------~~~~P~ILfIDEID~l~~~r~~~ 325 (676)
+++.+..........|.. .+...|..+ ....+++|||||+|.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~----- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLED----- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-----
Confidence 223222211111112110 011112111 011367999999999842
Q ss_pred CCCCChHHHHHHHHHHHHhcc----CCC-------CCCeEEEEecCCcc-cccccccCCCccceEEecCCC-CHHHHHHH
Q 005815 326 IGGGNDEREQTLNQLLTEMDG----FTG-------NSGVIVIAATNRPE-ILDSALHRPGRFDRQVSVGLP-DIRGREQI 392 (676)
Q Consensus 326 ~~~~~~~~~~~l~~LL~~ld~----~~~-------~~~ViVIaaTN~~~-~Ld~aLlrpGRfd~~I~v~~P-d~~~R~~I 392 (676)
. .++.|+..++. +.. ..++++|++||..+ .+++++++ ||+.++.++.| +.+.+.+|
T Consensus 159 ------~---~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 159 ------H---IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp ------H---HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred ------H---HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 2 33444444432 111 12689999999755 79999999 99999999999 67777788
Q ss_pred HHHHhc-------------------------------CCCCCccccHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHcC
Q 005815 393 LKVHSN-------------------------------NKKLDKDVSLSVIATRTPG---FSGADLANLMNEAAILAGRRG 438 (676)
Q Consensus 393 L~~~l~-------------------------------~~~l~~d~dl~~La~~t~G---~sgadL~~lv~~A~~~A~r~~ 438 (676)
++.++. ...+++++ +..|++...+ .+.+.+.++++.|...|..++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~-~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTA-LYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHH-HHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 866311 11233322 4555554433 267999999999999998888
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 005815 439 KANITLKEIDDSIDRIVAG 457 (676)
Q Consensus 439 ~~~It~~di~~Ai~~v~~g 457 (676)
+..|+.+|+.+|+..+...
T Consensus 307 ~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 307 ATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp CSBCCHHHHHHHHHHHHGG
T ss_pred CCcCCHHHHHHHHHHHHhh
Confidence 8899999999999887643
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.73 E-value=2.6e-17 Score=178.17 Aligned_cols=233 Identities=20% Similarity=0.213 Sum_probs=144.2
Q ss_pred ccccchhhHHHHHHHHHH-hcChhHH-----------------hhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005815 215 DVAGVDEAKQDFQEIVQF-LQTPEKF-----------------AAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 276 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~-l~~~~~~-----------------~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i 276 (676)
+|+|++++|+.+...+.. +...... .......+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999887732 1111100 0112334567999999999999999999999999999
Q ss_pred EEechhHH-HHHhhhh-hHHHHHHHHHHh----hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC--
Q 005815 277 SLSGSEFI-EMFVGVG-ASRVRDLFNKAK----ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-- 348 (676)
Q Consensus 277 ~is~s~~~-~~~~g~~-~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-- 348 (676)
.++++.+. ..+.|.. ...+..+|..+. ...++||||||+|.+...+.......+.....+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998865 3344443 334555554432 235789999999999765433221222222346777777777531
Q ss_pred -----------------CCCCeEEEEecCCc-----------------------------------------cccccccc
Q 005815 349 -----------------GNSGVIVIAATNRP-----------------------------------------EILDSALH 370 (676)
Q Consensus 349 -----------------~~~~ViVIaaTN~~-----------------------------------------~~Ld~aLl 370 (676)
..+++++|+++|.. ..+.|++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12557888887721 12345566
Q ss_pred CCCccceEEecCCCCHHHHHHHHHH----H-------hc--CCC--CCccccHHHHHHhCC--CCcHHHHHHHHHHHHHH
Q 005815 371 RPGRFDRQVSVGLPDIRGREQILKV----H-------SN--NKK--LDKDVSLSVIATRTP--GFSGADLANLMNEAAIL 433 (676)
Q Consensus 371 rpGRfd~~I~v~~Pd~~~R~~IL~~----~-------l~--~~~--l~~d~dl~~La~~t~--G~sgadL~~lv~~A~~~ 433 (676)
+ ||+..+.+++++.++..+|+.. + +. +.. ++++ .+..|+.... ..+.++|.++++.+...
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE-AIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH-HHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 6 8989999999999999998862 1 11 111 2222 3667777644 35789999999988887
Q ss_pred HHHcCC------CCCCHHHHHHH
Q 005815 434 AGRRGK------ANITLKEIDDS 450 (676)
Q Consensus 434 A~r~~~------~~It~~di~~A 450 (676)
+..+.. ..|+.++++.+
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHhhccCCCCCEEEEeHHHhcCC
Confidence 655422 24788887654
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=1.9e-16 Score=169.63 Aligned_cols=223 Identities=17% Similarity=0.252 Sum_probs=158.2
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc------CCCEEEEechhH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSLSGSEF 283 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~------~~p~i~is~s~~ 283 (676)
...+++++|.++..+.+.+.+..... ...+..++|+||||||||+|++++++++ +.+++++++...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34568999999988877665432211 1345679999999999999999999988 889999998653
Q ss_pred HH------HHh----------hhhhHH-HHHHHHHHhhC-CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc
Q 005815 284 IE------MFV----------GVGASR-VRDLFNKAKAN-SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 345 (676)
Q Consensus 284 ~~------~~~----------g~~~~~-vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld 345 (676)
.. ... +..... ...++...... .|++|+|||+|.+..... ...+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchh
Confidence 21 110 111122 33444444433 389999999999964321 125666776665
Q ss_pred cCCCCCCeEEEEecCCc---ccccccccCCCccc-eEEecCCCCHHHHHHHHHHHhcC----CCCCccccHHHHHHhCC-
Q 005815 346 GFTGNSGVIVIAATNRP---EILDSALHRPGRFD-RQVSVGLPDIRGREQILKVHSNN----KKLDKDVSLSVIATRTP- 416 (676)
Q Consensus 346 ~~~~~~~ViVIaaTN~~---~~Ld~aLlrpGRfd-~~I~v~~Pd~~~R~~IL~~~l~~----~~l~~d~dl~~La~~t~- 416 (676)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++.. ..+.++ .+..++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 233 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDN-VIKLCAALAAR 233 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHH-HHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHH
Confidence 54 34578899999877 457777877 675 58999999999999999987652 223333 3566776665
Q ss_pred --CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 417 --GFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 417 --G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
| +++.+.++++.|...|...+...|+.+|+..++....
T Consensus 234 ~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 234 EHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 5 6777888999999999888888999999999988764
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=1.4e-16 Score=169.46 Aligned_cols=214 Identities=20% Similarity=0.209 Sum_probs=151.4
Q ss_pred ccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC------CC
Q 005815 201 AKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG------VP 274 (676)
Q Consensus 201 ~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~------~p 274 (676)
...|.+++++.+|++++|++++++.+...+. .. . +.++||+||||||||++++++|++++ ..
T Consensus 24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLK---SA--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp --CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---CT--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred CccHHHhcCCCCHHHhhCCHHHHHHHHHHHh---cC--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 3467788899999999999999887765542 21 1 23499999999999999999999853 46
Q ss_pred EEEEechhHHHHHhhhhhHHHHHHHHHHh----------------hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHH
Q 005815 275 FFSLSGSEFIEMFVGVGASRVRDLFNKAK----------------ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLN 338 (676)
Q Consensus 275 ~i~is~s~~~~~~~g~~~~~vr~lF~~A~----------------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~ 338 (676)
++.+++++... ...+++.+.... ...+.||||||+|.+.. ...+
T Consensus 92 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------~~~~ 151 (353)
T 1sxj_D 92 ILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------DAQS 151 (353)
T ss_dssp EEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------HHHH
T ss_pred eEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------HHHH
Confidence 88888765311 111222111111 12456999999999942 1335
Q ss_pred HHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCC
Q 005815 339 QLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPG 417 (676)
Q Consensus 339 ~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G 417 (676)
.|+..++... ....+|.+||.++.+++++.+ |+. .+.+++|+.++...+++..+....+. ++..+..+++.+.|
T Consensus 152 ~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 152 ALRRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp HHHHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred HHHHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 5555555443 345677788999999999998 885 88999999999999999887654432 23347889998887
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHH
Q 005815 418 FSGADLANLMNEAAILAGRRGKA-NITLKEIDDSID 452 (676)
Q Consensus 418 ~sgadL~~lv~~A~~~A~r~~~~-~It~~di~~Ai~ 452 (676)
+.+.+.++++.+...+.+.+.. .|+.+|+.+++.
T Consensus 227 -~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 227 -DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp -CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 5777778888777776554433 799999987653
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=5.1e-17 Score=155.90 Aligned_cols=160 Identities=25% Similarity=0.401 Sum_probs=116.0
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSL 278 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~i 278 (676)
.+.+|++++|.++..+.+.+.+ .. ..+++++|+||||||||++++++++++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVL---QR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHH---hc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 4567999999998776665543 22 235679999999999999999999986 7899999
Q ss_pred echhHHH--HHhhhhhHHHHHHHHHHh-hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 279 SGSEFIE--MFVGVGASRVRDLFNKAK-ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 279 s~s~~~~--~~~g~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
++.++.. .+.+.....++.++..+. ...++||||||+|.+...+... ........+..++. ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~-------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALA-------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhc-------cCCeEE
Confidence 9988762 344555566777777654 4568899999999997543211 11122333333332 346788
Q ss_pred EEecCCcc-----cccccccCCCccceEEecCCCCHHHHHHHH
Q 005815 356 IAATNRPE-----ILDSALHRPGRFDRQVSVGLPDIRGREQIL 393 (676)
Q Consensus 356 IaaTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL 393 (676)
|++||.++ .+++++.+ ||+ .+.+++|+.++|.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888876 68999999 998 6999999999998875
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=1.9e-16 Score=165.78 Aligned_cols=207 Identities=21% Similarity=0.244 Sum_probs=147.4
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEE
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFF 276 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i 276 (676)
..|.+++.+.+|++++|++++++.+.+.+. . ...| ++||+||||||||++|+++++.+ +.+++
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 346678889999999999999887765442 1 1223 39999999999999999999986 44678
Q ss_pred EEechhHHHHHhhhhhHHHHHHHHHHh------hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 277 SLSGSEFIEMFVGVGASRVRDLFNKAK------ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 277 ~is~s~~~~~~~g~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
.+++++... ...++..+.... ...+.||||||+|.+.. ...+.|+..++.. .
T Consensus 73 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~ 130 (319)
T 2chq_A 73 EMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--S 130 (319)
T ss_dssp EEETTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--S
T ss_pred EEeCccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--C
Confidence 888876421 111222222221 14578999999999842 2455666666643 3
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNE 429 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~ 429 (676)
.++++|++||.+..+++++.+ |+. .+.+++|+.+++.+++..++...+.. ++..+..++..+.| +.+.+.++++.
T Consensus 131 ~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~ 206 (319)
T 2chq_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQG 206 (319)
T ss_dssp SSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 467889999999999999998 885 89999999999999999888765543 23346778877765 55666666655
Q ss_pred HHHHHHHcCCCCCCHHHHHHHH
Q 005815 430 AAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 430 A~~~A~r~~~~~It~~di~~Ai 451 (676)
+.. . ...|+.+++.+.+
T Consensus 207 ~~~---~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 207 AAA---I--GEVVDADTIYQIT 223 (319)
T ss_dssp HHH---S--SSCBCHHHHHHHT
T ss_pred HHH---c--CCCCCHHHHHHHH
Confidence 442 1 3568988887664
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=5.2e-16 Score=182.94 Aligned_cols=223 Identities=20% Similarity=0.301 Sum_probs=161.6
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEE
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 277 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~ 277 (676)
..+-+|++++|.++..+.+.+++ .. ..+.++||+||||||||++|+++|..+ +.+++.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l---~~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVL---CR---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHH---hc---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 34558999999998777665543 22 235679999999999999999999986 666888
Q ss_pred EechhHH--HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 278 LSGSEFI--EMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 278 is~s~~~--~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
++.+.+. ..+.|....+++.+|..+....++||||||+|.+.++++. ........+.|. .+..+.++.+
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-----~~~~~~~~~~L~----~~l~~~~~~~ 318 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA-----SGGQVDAANLIK----PLLSSGKIRV 318 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS-----SSCHHHHHHHHS----SCSSSCCCEE
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC-----CcchHHHHHHHH----HHHhCCCeEE
Confidence 8877766 3466777888999999998888999999999999755432 111222333232 2334567899
Q ss_pred EEecCCcc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcC------CCCCccccHHHHHHhCC-----CCc
Q 005815 356 IAATNRPE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN------KKLDKDVSLSVIATRTP-----GFS 419 (676)
Q Consensus 356 IaaTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~------~~l~~d~dl~~La~~t~-----G~s 419 (676)
|++||.++ .+|+++.+ ||+ .+.++.|+.++|.+|++.+... ..+.++ .+..++..+. .+.
T Consensus 319 I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~l 394 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHL 394 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCT
T ss_pred EEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccC
Confidence 99999764 47899999 997 7999999999999999876643 223222 3555555443 355
Q ss_pred HHHHHHHHHHHHHHHHH----cCCCCCCHHHHHHHHHHHH
Q 005815 420 GADLANLMNEAAILAGR----RGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 420 gadL~~lv~~A~~~A~r----~~~~~It~~di~~Ai~~v~ 455 (676)
+..+..++++|...+.. .+...|+.+|+..++.+..
T Consensus 395 p~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 395 PDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp THHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 67888899998876654 3456899999999998875
No 60
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.68 E-value=2.4e-16 Score=165.02 Aligned_cols=203 Identities=19% Similarity=0.265 Sum_probs=138.8
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH-----
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE----- 285 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~----- 285 (676)
++++|++.+++.+...+......-. ...++...+||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 4688999999998887765321000 011222369999999999999999999987 66899999987532
Q ss_pred HHhhhh-----hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC--C-------CC
Q 005815 286 MFVGVG-----ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT--G-------NS 351 (676)
Q Consensus 286 ~~~g~~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~--~-------~~ 351 (676)
...|.. ......+.........++|||||+|.+. . .+++.|+..++... . -.
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------~---~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------P---DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------H---HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------H---HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 222210 0000122233334455899999999983 2 24455555554321 0 13
Q ss_pred CeEEEEecCC--------------------------cccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC-----
Q 005815 352 GVIVIAATNR--------------------------PEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK----- 400 (676)
Q Consensus 352 ~ViVIaaTN~--------------------------~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~----- 400 (676)
++++|+|||. ...+++++++ ||+..+.+.+|+.+++..|++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998 5568888887 999999999999999999998876542
Q ss_pred ----CCC-ccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 005815 401 ----KLD-KDVSLSVIATRTP--GFSGADLANLMNEAAILAG 435 (676)
Q Consensus 401 ----~l~-~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A~ 435 (676)
... .+..+..|+...+ ..+.++|+++++.+...+.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 111 2233677888776 6788999999998876553
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=1.5e-15 Score=163.30 Aligned_cols=220 Identities=13% Similarity=0.134 Sum_probs=157.9
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCC--eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhHH
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPK--GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSEFI 284 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~--gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~~~ 284 (676)
..+++++|.++..+.+.+.+...... ..+. .++|+||||||||++++++++.+ +.++++++|+...
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 34588999999988888776542111 1233 79999999999999999999988 6789999875432
Q ss_pred ------HHHh----------hhhhHHHH-HHHHHHh-hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc
Q 005815 285 ------EMFV----------GVGASRVR-DLFNKAK-ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 346 (676)
Q Consensus 285 ------~~~~----------g~~~~~vr-~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~ 346 (676)
.... +.....+. .+..... ...|.||||||+|.+. ...++.|+..++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQE 151 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHHh
Confidence 1111 11111222 2222222 3558999999999982 2356667676654
Q ss_pred CCC--CCCeEEEEecCCc---ccccccccCCCccce-EEecCCCCHHHHHHHHHHHhcC----CCCCccccHHHHHHhCC
Q 005815 347 FTG--NSGVIVIAATNRP---EILDSALHRPGRFDR-QVSVGLPDIRGREQILKVHSNN----KKLDKDVSLSVIATRTP 416 (676)
Q Consensus 347 ~~~--~~~ViVIaaTN~~---~~Ld~aLlrpGRfd~-~I~v~~Pd~~~R~~IL~~~l~~----~~l~~d~dl~~La~~t~ 416 (676)
... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ..++ +..+..+++.+.
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~ 228 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS-EDILQMIADITG 228 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC-HHHHHHHHHHHS
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHh
Confidence 432 2478899999987 567777777 8875 8999999999999999887753 2233 334778888883
Q ss_pred --------CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 417 --------GFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 417 --------G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
+-+.+.+.++++.|...|..++...|+.+++..++....
T Consensus 229 ~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 229 AQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp BSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 236788999999999999888889999999999988764
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.67 E-value=2.5e-16 Score=175.84 Aligned_cols=209 Identities=22% Similarity=0.341 Sum_probs=142.4
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCE
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPF 275 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~ 275 (676)
+...+-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|
T Consensus 172 ~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 172 AIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 345567899999999988877665532 224579999999999999999999996 7889
Q ss_pred EEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEE
Q 005815 276 FSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIV 355 (676)
Q Consensus 276 i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViV 355 (676)
+.++++ ..+.|....+++.+|..+....|+||||| +. ....+.|+..++ .+.+.+
T Consensus 240 ~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-------------~~a~~~L~~~L~----~g~v~v 294 (468)
T 3pxg_A 240 MTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQC 294 (468)
T ss_dssp ECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEE
T ss_pred EEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-------------hhHHHHHHHhhc----CCCEEE
Confidence 999987 56677777889999999998889999999 10 112344444443 457899
Q ss_pred EEecCCcc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC----CCC-ccccHHHHHHhCCC-----CcH
Q 005815 356 IAATNRPE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK----KLD-KDVSLSVIATRTPG-----FSG 420 (676)
Q Consensus 356 IaaTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~----~l~-~d~dl~~La~~t~G-----~sg 420 (676)
|++||.++ .+|+++.+ ||. .|.|+.|+.+++.+|++.++... ... .+..+..++..+.+ +.+
T Consensus 295 I~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp 371 (468)
T 3pxg_A 295 IGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (468)
T ss_dssp EEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCC
Confidence 99999887 58999999 997 59999999999999999887652 221 22335555554433 335
Q ss_pred HHHHHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHH
Q 005815 421 ADLANLMNEAAILAGRRGK-ANITLKEIDDSIDRI 454 (676)
Q Consensus 421 adL~~lv~~A~~~A~r~~~-~~It~~di~~Ai~~v 454 (676)
.....++.+|...+..+.. ..-...+++..+.++
T Consensus 372 ~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 372 DKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 5677788887766554432 344555565555544
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.66 E-value=2.2e-15 Score=161.53 Aligned_cols=207 Identities=19% Similarity=0.288 Sum_probs=151.0
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 005815 204 EMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 274 (676)
Q Consensus 204 ~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p--------- 274 (676)
+.+++.+.+|++++|++++++.+.+.+.. ...+..+||+||||||||++++++|+.++..
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 74 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 34567788999999999999988876642 1345679999999999999999999987542
Q ss_pred ---------------EEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHH
Q 005815 275 ---------------FFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQ 335 (676)
Q Consensus 275 ---------------~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~ 335 (676)
++.++.+. ......++.+++.+.. ..+.||+|||+|.+. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~ 134 (373)
T 1jr3_A 75 VCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RH 134 (373)
T ss_dssp SSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HH
T ss_pred ccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HH
Confidence 22232211 0112346667766543 346899999999983 12
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 005815 336 TLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATR 414 (676)
Q Consensus 336 ~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~ 414 (676)
..+.|+..++.. ..++++|.+|+.+..+.+.+.+ |+ ..+.+++|+.++..++++.+++..+.. .+..+..+++.
T Consensus 135 ~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~ 209 (373)
T 1jr3_A 135 SFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA 209 (373)
T ss_dssp HHHHHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456677777643 3468888888988899999988 76 789999999999999999887654432 22336788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 415 TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 415 t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
+.| +.+++.++++.+...+ ...|+.+++.+++
T Consensus 210 ~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 210 AEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp SSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 876 7888888888775432 3579999987765
No 64
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.5e-15 Score=157.38 Aligned_cols=206 Identities=17% Similarity=0.185 Sum_probs=147.4
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEE
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS 277 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~ 277 (676)
.|.+++.+.+|++++|++.+++.+.+.+.. ...|. ++|+||||+|||++|+++++++ +.+++.
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 355667888999999999999888776531 13344 9999999999999999999986 456788
Q ss_pred EechhHHHHHhhhhhHHHHHHHHHHh-------hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 278 LSGSEFIEMFVGVGASRVRDLFNKAK-------ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 278 is~s~~~~~~~g~~~~~vr~lF~~A~-------~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
+++++.. +...+++.+.... ...+++|+|||+|.+.. ...+.|+..++.. .
T Consensus 78 ~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~ 135 (323)
T 1sxj_B 78 LNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMELY--S 135 (323)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHHT--T
T ss_pred ecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhcc--C
Confidence 8776521 1234555555443 23478999999999842 2344555555543 3
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNE 429 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~ 429 (676)
.++++|.+||.++.+++.+.+ |+. .+.+++|+.++..++++.++...+.. ++..+..++..+.| +.+.+.++++.
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~ 211 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQS 211 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 457788888999999999988 774 89999999999999999887643332 23346788888866 55666666655
Q ss_pred HHHHHHHcCCCCCCHHHHHHHH
Q 005815 430 AAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 430 A~~~A~r~~~~~It~~di~~Ai 451 (676)
+... ...|+.+++.+++
T Consensus 212 ~~~~-----~~~i~~~~v~~~~ 228 (323)
T 1sxj_B 212 TVAG-----HGLVNADNVFKIV 228 (323)
T ss_dssp HHHH-----HSSBCHHHHHHHH
T ss_pred HHhc-----CCCcCHHHHHHHH
Confidence 5422 1468998887775
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=4.1e-15 Score=156.12 Aligned_cols=207 Identities=23% Similarity=0.272 Sum_probs=146.5
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC-----CCEE
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 276 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~-----~p~i 276 (676)
..|.+++.+.+|++++|++++++.+...+.. + . ..++||+||||||||++|+++++.+. .+++
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----------~-~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~ 80 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT----------G-S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFL 80 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH----------T-C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHc----------C-C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence 3566778889999999999999988876642 1 1 23499999999999999999999863 3578
Q ss_pred EEechhHHHHHhhhhhHHHHHHHHHH-h-----hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 277 SLSGSEFIEMFVGVGASRVRDLFNKA-K-----ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 277 ~is~s~~~~~~~g~~~~~vr~lF~~A-~-----~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
.+++++.... ..++..+... . ...+.+|+|||+|.+.. ...+.|+..++.. .
T Consensus 81 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~ 138 (327)
T 1iqp_A 81 ELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--S 138 (327)
T ss_dssp EEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--T
T ss_pred EeeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--C
Confidence 8887764321 1122222221 1 14578999999999831 2345566666543 3
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNE 429 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~ 429 (676)
.++.+|++||.++.+++++.+ |+. .+.+++|+.++..++++.++...+.. ++..+..++..+.| +.+.+.++++.
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~ 214 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQA 214 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 457888889999999999988 875 88999999999999999888765532 23346788887766 56666666665
Q ss_pred HHHHHHHcCCCCCCHHHHHHHH
Q 005815 430 AAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 430 A~~~A~r~~~~~It~~di~~Ai 451 (676)
+.. ....|+.+++...+
T Consensus 215 ~~~-----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 215 AAA-----LDKKITDENVFMVA 231 (327)
T ss_dssp HHT-----TCSEECHHHHHHHT
T ss_pred HHh-----cCCCCCHHHHHHHH
Confidence 542 23468888876654
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=1.6e-15 Score=178.91 Aligned_cols=197 Identities=21% Similarity=0.271 Sum_probs=137.5
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCC-eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhh
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVG 289 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~-gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g 289 (676)
++|+|++++++.+.+.+........ ....|. ++||+||||||||++|+++|..+ +.+|+.++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5689999999999888876432110 011233 59999999999999999999987 789999999998876543
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC---------CCCCeEEEEecC
Q 005815 290 VGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT---------GNSGVIVIAATN 360 (676)
Q Consensus 290 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~---------~~~~ViVIaaTN 360 (676)
. ...++...+...++||||||||.+. ..+++.|+..|+.-. ...++++|+|||
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAH--------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSC--------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccC--------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 3 1223344455667899999999883 234555666665421 224679999999
Q ss_pred Cccc------------ccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC-------CCC---ccccHHHHHH--hCC
Q 005815 361 RPEI------------LDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK-------KLD---KDVSLSVIAT--RTP 416 (676)
Q Consensus 361 ~~~~------------Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~-------~l~---~d~dl~~La~--~t~ 416 (676)
.+.. ++|+++. ||+..|.|++|+.+++.+|++.++... ... .+..+..|++ ..+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 706 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL 706 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT
T ss_pred CChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC
Confidence 6543 6788887 999999999999999999998776432 111 2223566765 345
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 005815 417 GFSGADLANLMNEAAILA 434 (676)
Q Consensus 417 G~sgadL~~lv~~A~~~A 434 (676)
.++.++|+++++.+...+
T Consensus 707 ~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 707 EYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp TTTTTTHHHHHHHHTHHH
T ss_pred CCCChHHHHHHHHHHHHH
Confidence 667888988888765443
No 67
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=9.9e-16 Score=162.22 Aligned_cols=138 Identities=10% Similarity=0.123 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEechhHHH----------HHhh------hhhHHHHHH
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSLSGSEFIE----------MFVG------VGASRVRDL 298 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i~is~s~~~~----------~~~g------~~~~~vr~l 298 (676)
..|.+++|+||||||||++++++++++ .+.+++++|..+.+ .+.| .....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 457889999999999999999999988 35688899865322 2222 234567788
Q ss_pred HHHH--hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc----ccccccCC
Q 005815 299 FNKA--KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI----LDSALHRP 372 (676)
Q Consensus 299 F~~A--~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~----Ld~aLlrp 372 (676)
|... ....++||||||+|.+. .+.++..|+.... ..+++++||+.+|..+. |++++.+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 8764 35678999999999995 1246677776543 23567899999998754 5666666
Q ss_pred Cccc-eEEecCCCCHHHHHHHHHHHhcC
Q 005815 373 GRFD-RQVSVGLPDIRGREQILKVHSNN 399 (676)
Q Consensus 373 GRfd-~~I~v~~Pd~~~R~~IL~~~l~~ 399 (676)
||. ..|.|++++.++..+|++..+..
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 887 68999999999999999988764
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=1.8e-15 Score=178.48 Aligned_cols=192 Identities=22% Similarity=0.322 Sum_probs=136.4
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEE
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 276 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i 276 (676)
...+-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 44566899999999988877765532 234579999999999999999999996 88899
Q ss_pred EEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEE
Q 005815 277 SLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVI 356 (676)
Q Consensus 277 ~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVI 356 (676)
.+++ ...|.|....+++.+|..+....|+||||| +. ....+.|+..++ +..+.+|
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-------------~~~~~~L~~~l~----~~~v~~I 295 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-------------IDASNILKPSLA----RGELQCI 295 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEE
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-------------hhHHHHHHHHHh----cCCEEEE
Confidence 8887 455678888899999999999999999999 10 113344444443 5678999
Q ss_pred EecCCcc-----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC----CC-ccccHHHHHHh-----CCCCcHH
Q 005815 357 AATNRPE-----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK----LD-KDVSLSVIATR-----TPGFSGA 421 (676)
Q Consensus 357 aaTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~----l~-~d~dl~~La~~-----t~G~sga 421 (676)
++||..+ .+|+++.| || ..|.|+.|+.+++.+||+.+..... .. .+..+..++.. +.++.+.
T Consensus 296 ~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~ 372 (758)
T 3pxi_A 296 GATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPD 372 (758)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTH
T ss_pred eCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCc
Confidence 9999888 69999999 99 5699999999999999998776532 11 22224444443 3456777
Q ss_pred HHHHHHHHHHHHHHHcC
Q 005815 422 DLANLMNEAAILAGRRG 438 (676)
Q Consensus 422 dL~~lv~~A~~~A~r~~ 438 (676)
....++.+|...+..+.
T Consensus 373 ~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 373 KAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888877665443
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.62 E-value=3.3e-15 Score=178.35 Aligned_cols=205 Identities=24% Similarity=0.321 Sum_probs=135.8
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEE
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 276 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i 276 (676)
...+-+|++++|.++..+.+.+++ .. ..+++++|+||||||||++++++|+.+ +.+++
T Consensus 163 ~~r~~~ld~viGr~~~i~~l~~~l---~~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 163 LAAEGKLDPVIGRDEEIRRVIQIL---LR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHH---HC---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HHhcCCCcccCCcHHHHHHHHHHH---hc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 345678999999997666655544 22 234579999999999999999999987 88999
Q ss_pred EEechhHH--HHHhhhhhHHHHHHHHHHhhC-CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCe
Q 005815 277 SLSGSEFI--EMFVGVGASRVRDLFNKAKAN-SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGV 353 (676)
Q Consensus 277 ~is~s~~~--~~~~g~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~V 353 (676)
.++++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+.+.. .+. ....+.|...++ ..++
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~---~~~~~~L~~~l~----~~~i 300 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGA---VDAGNMLKPALA----RGEL 300 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCC
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cch---HHHHHHHHHHHh----CCCe
Confidence 99998886 456777888899999998875 7899999999999754322 111 122333333332 3567
Q ss_pred EEEEecCCcc----cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC------CCCccccHHHHHHh-----CCCC
Q 005815 354 IVIAATNRPE----ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK------KLDKDVSLSVIATR-----TPGF 418 (676)
Q Consensus 354 iVIaaTN~~~----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~------~l~~d~dl~~La~~-----t~G~ 418 (676)
.+|++||.++ .+|+++.+ ||+. +.++.|+.+++.+|++.++... .+. +..+..++.. +..+
T Consensus 301 ~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~~~~ 376 (854)
T 1qvr_A 301 RLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYITERR 376 (854)
T ss_dssp CEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCCSSC
T ss_pred EEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhccccc
Confidence 8999999775 37999999 9985 9999999999999998766422 222 2224555554 3456
Q ss_pred cHHHHHHHHHHHHHHHHHc
Q 005815 419 SGADLANLMNEAAILAGRR 437 (676)
Q Consensus 419 sgadL~~lv~~A~~~A~r~ 437 (676)
.+.....++.+|...+..+
T Consensus 377 lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 377 LPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 7788888888888776554
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.61 E-value=4.2e-15 Score=152.67 Aligned_cols=204 Identities=22% Similarity=0.245 Sum_probs=123.8
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhHHHHH
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSLSGSEFIEMF 287 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~---~p~i~is~s~~~~~~ 287 (676)
.+|++++|.+.+.+.+.+.+..+.. .+.++||+||||||||++|++++..+. .||+.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999999998888877765432 245799999999999999999999874 799999998764321
Q ss_pred -----hhhhhHH-------HHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccC--------
Q 005815 288 -----VGVGASR-------VRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-------- 347 (676)
Q Consensus 288 -----~g~~~~~-------vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~-------- 347 (676)
.|..... ....|..+ ..++|||||+|.+. ...+ ..|+..++..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----------~~~q---~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MMVQ---EKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----------HHHH---HHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----------HHHH---HHHHHHHHhCCeecCCCc
Confidence 1110000 01223332 35799999999994 2223 3444444321
Q ss_pred -CCCCCeEEEEecCCc-c------cccccccCCCccceEEecCCCCHHHH----HHHHHHHhc----CC------CCCcc
Q 005815 348 -TGNSGVIVIAATNRP-E------ILDSALHRPGRFDRQVSVGLPDIRGR----EQILKVHSN----NK------KLDKD 405 (676)
Q Consensus 348 -~~~~~ViVIaaTN~~-~------~Ld~aLlrpGRfd~~I~v~~Pd~~~R----~~IL~~~l~----~~------~l~~d 405 (676)
....++.+|++||.+ . .+++.|.+ ||.. +.+..|+..+| ..++++++. .. .+++
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~- 211 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTE- 211 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCH-
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCH-
Confidence 112357899999974 2 35677777 8853 34455666554 334443332 11 1222
Q ss_pred ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 005815 406 VSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEID 448 (676)
Q Consensus 406 ~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~ 448 (676)
..+..|....+..+.++|.++++.+...+ ....|+.+|+.
T Consensus 212 ~a~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l~ 251 (265)
T 2bjv_A 212 RARETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDII 251 (265)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCCC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHcc
Confidence 23566766666668899999999988665 34567777663
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=2.6e-15 Score=176.99 Aligned_cols=194 Identities=20% Similarity=0.306 Sum_probs=137.9
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCC---CC-CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH---
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAK---IP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM--- 286 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~---~p-~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~--- 286 (676)
++|+|++++++.+...+..... |.. .| .++||+||||||||++|+++|..++.+|+.++++++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~-------g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARA-------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHT-------TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHhc-------ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4588999999988877654321 221 23 359999999999999999999999999999999988653
Q ss_pred ---------HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC--------
Q 005815 287 ---------FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-------- 349 (676)
Q Consensus 287 ---------~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-------- 349 (676)
|+|.... ..+....+...++||||||||.+. ..+++.|+..||.-.-
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTTEEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC--------------HHHHHHHHHHhcCcEEEcCCCCEE
Confidence 3333222 223444455667999999999883 2356666666653210
Q ss_pred -CCCeEEEEecCCcc-------------------------cccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC---
Q 005815 350 -NSGVIVIAATNRPE-------------------------ILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK--- 400 (676)
Q Consensus 350 -~~~ViVIaaTN~~~-------------------------~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~--- 400 (676)
-.+++||+|||... .++|++++ ||+..|.|++|+.+++..|++.++...
T Consensus 595 ~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 14588999999753 57788888 999999999999999999999887522
Q ss_pred --------CCCccccHHHHHHhC--CCCcHHHHHHHHHHHHHH
Q 005815 401 --------KLDKDVSLSVIATRT--PGFSGADLANLMNEAAIL 433 (676)
Q Consensus 401 --------~l~~d~dl~~La~~t--~G~sgadL~~lv~~A~~~ 433 (676)
.+++ ..+..|++.. ..+..+++.++++.+...
T Consensus 673 ~~~~~~~~~~~~-~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 673 LDQKGVSLEVSQ-EARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHTTEEEEECH-HHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HHHCCcEEEeCH-HHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 1222 2256666544 244578888888777654
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.61 E-value=1.8e-15 Score=145.01 Aligned_cols=155 Identities=27% Similarity=0.374 Sum_probs=110.2
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----------CCCEE
Q 005815 207 PNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 276 (676)
Q Consensus 207 ~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----------~~p~i 276 (676)
+..+.+|++++|.++..+.+.+.+ .. ..+++++|+||||||||+++++++.++ +.+++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HHhccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 344568999999998766655433 22 235679999999999999999999987 78899
Q ss_pred EEechhHHHH--HhhhhhHHHHHHHHHHhhC-CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCe
Q 005815 277 SLSGSEFIEM--FVGVGASRVRDLFNKAKAN-SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGV 353 (676)
Q Consensus 277 ~is~s~~~~~--~~g~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~V 353 (676)
.+++..+... +.+.....++.++..+... .|++|||||+|.+...+... ..... ..+.|...++ ..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~---~~~~l~~~~~----~~~~ 153 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALD---AGNILKPMLA----RGEL 153 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCC---THHHHHHHHH----TTCS
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchH---HHHHHHHHHh----cCCe
Confidence 9998877543 3344555677777776654 68899999999997543311 11122 2233333332 3567
Q ss_pred EEEEecCCcc-----cccccccCCCccceEEecCCCC
Q 005815 354 IVIAATNRPE-----ILDSALHRPGRFDRQVSVGLPD 385 (676)
Q Consensus 354 iVIaaTN~~~-----~Ld~aLlrpGRfd~~I~v~~Pd 385 (676)
++|++||.++ .+++++.+ ||+ .+.++.|+
T Consensus 154 ~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 154 RCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred eEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 8999999776 58999999 998 48998886
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=8.2e-15 Score=156.32 Aligned_cols=195 Identities=15% Similarity=0.209 Sum_probs=133.2
Q ss_pred ccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC---------
Q 005815 203 FEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------- 273 (676)
Q Consensus 203 ~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~--------- 273 (676)
.|++++++.+|++++|++++++.+++.+. . ..+.|. ++|+||||+|||++++++++++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 57889999999999999998887765431 1 123455 999999999999999999996411
Q ss_pred --------------------CEEEEechhHHHHHhhhhhHHHHHHHHHHh--------------hCCCeEEEEcCCcccc
Q 005815 274 --------------------PFFSLSGSEFIEMFVGVGASRVRDLFNKAK--------------ANSPCLVFIDEIDAVG 319 (676)
Q Consensus 274 --------------------p~i~is~s~~~~~~~g~~~~~vr~lF~~A~--------------~~~P~ILfIDEID~l~ 319 (676)
+++.++.++... .....+++.++.+. ...|.||+|||+|.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 233333332110 00012444444432 2357799999999972
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcC
Q 005815 320 RQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNN 399 (676)
Q Consensus 320 ~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~ 399 (676)
. ...+.|+..++... .+..+|.+||.++.+.+.+.+ |+ ..+.+++|+.++..++++..+..
T Consensus 148 -----------~---~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 148 -----------K---DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp -----------H---HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----------H---HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 2 23455555555443 357888888999999999988 88 78999999999999999988765
Q ss_pred CCCC-c-cccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 005815 400 KKLD-K-DVSLSVIATRTPGFSGADLANLMNEAAI 432 (676)
Q Consensus 400 ~~l~-~-d~dl~~La~~t~G~sgadL~~lv~~A~~ 432 (676)
.++. + +..+..+++.+.| +.+++.++++.+..
T Consensus 209 ~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 209 ERIQLETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp HTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred cCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 4432 2 3347888888766 66677777766654
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.58 E-value=3.8e-15 Score=167.01 Aligned_cols=208 Identities=19% Similarity=0.163 Sum_probs=132.5
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechh-HHHHHhhh
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSE-FIEMFVGV 290 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s~-~~~~~~g~ 290 (676)
..|+|++++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+++.- -.+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3478999888766543321 24799999999999999999999884 4666665531 11222221
Q ss_pred --hhH-HHHHHHHHHhhC---CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC--------CCCCeEEE
Q 005815 291 --GAS-RVRDLFNKAKAN---SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT--------GNSGVIVI 356 (676)
Q Consensus 291 --~~~-~vr~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~--------~~~~ViVI 356 (676)
... .-...|..+... .++|||||||+.+. ..+.+.|+..|+... .....++|
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG--------------PAILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC--------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc--------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 111 012223322222 46799999998763 235566666664211 11122567
Q ss_pred EecCCccc---ccccccCCCccceEEecCCCCH-HHHHHHHHHHhcC-------------------------CCCCcccc
Q 005815 357 AATNRPEI---LDSALHRPGRFDRQVSVGLPDI-RGREQILKVHSNN-------------------------KKLDKDVS 407 (676)
Q Consensus 357 aaTN~~~~---Ld~aLlrpGRfd~~I~v~~Pd~-~~R~~IL~~~l~~-------------------------~~l~~d~d 407 (676)
+|||.+.. ..+++++ ||...+.++.|+. +++.+|++.+... ..+++++
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v- 230 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV- 230 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-
Confidence 77775322 3358888 9999999999987 7788898765431 1122221
Q ss_pred HHHHHHh---------CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 005815 408 LSVIATR---------TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDR 453 (676)
Q Consensus 408 l~~La~~---------t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~ 453 (676)
.+.++.. ..|.|.+.+..+++.|...|..+++..|+.+|+. ++..
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~ 284 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKD 284 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGG
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHh
Confidence 2333332 2588999999999999999999999999999998 4433
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=2.2e-14 Score=153.07 Aligned_cols=211 Identities=21% Similarity=0.235 Sum_probs=142.6
Q ss_pred cccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC-----CEE
Q 005815 202 KFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFF 276 (676)
Q Consensus 202 ~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~-----p~i 276 (676)
..|.+++++.+|++++|++++++.|...+.. .+.|. ++|+||||||||++++++|+.+.. .+.
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 4577788999999999999998888766542 13344 999999999999999999998632 366
Q ss_pred EEechhHHHHHhhhhhHHHHHHHHHHhh------CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCC
Q 005815 277 SLSGSEFIEMFVGVGASRVRDLFNKAKA------NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGN 350 (676)
Q Consensus 277 ~is~s~~~~~~~g~~~~~vr~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~ 350 (676)
.++.++.. +...+++.+..... ..+.|++|||+|.+.. ...+.|+..++...
T Consensus 81 ~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~-- 138 (340)
T 1sxj_C 81 ELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERYT-- 138 (340)
T ss_dssp EECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTT--
T ss_pred EEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcCC--
Confidence 66665421 12234443333221 2368999999999831 23455666666443
Q ss_pred CCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHH
Q 005815 351 SGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRTPGFSGADLANLMN 428 (676)
Q Consensus 351 ~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t~G~sgadL~~lv~ 428 (676)
..+.+|.+||.+..+.+++.+ |+. .+.+.+++.++..+++...+.... ++++ .+..++..+.| +.+.+.++++
T Consensus 139 ~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G-~~r~~~~~l~ 213 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG-DMRRVLNVLQ 213 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT-CHHHHHHHTT
T ss_pred CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHH
Confidence 346777888999999999998 875 789999999999999988875433 4333 36677777655 4444445544
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHH
Q 005815 429 EAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 429 ~A~~~A~r~~~~~It~~di~~Ai 451 (676)
.+...+...+...|+.+++.+++
T Consensus 214 ~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 214 SCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHhcCCcccccccHHHHHHHh
Confidence 44322211222368888876653
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.57 E-value=3.1e-15 Score=157.73 Aligned_cols=202 Identities=23% Similarity=0.299 Sum_probs=131.3
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH---
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF--- 287 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~--- 287 (676)
++++|.+.+.+.+.+.+..+. ..+.+|||+||||||||++|++++... +.||+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999988888776653 234579999999999999999999965 6899999998764322
Q ss_pred --hhhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC---------C
Q 005815 288 --VGVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT---------G 349 (676)
Q Consensus 288 --~g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~---------~ 349 (676)
.|... ......|..|. .++|||||||.+.. . ....|+..++... .
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~-----------~---~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP-----------L---MQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH-----------H---HHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH-----------H---HHHHHHHHHhcCEeeecCCcccc
Confidence 11100 01234455553 36999999999942 2 3344555554321 1
Q ss_pred CCCeEEEEecCCc--c-----cccccccCCCccceEEecCCCCHHHHH----HHHHHHhcC---------CCCCccccHH
Q 005815 350 NSGVIVIAATNRP--E-----ILDSALHRPGRFDRQVSVGLPDIRGRE----QILKVHSNN---------KKLDKDVSLS 409 (676)
Q Consensus 350 ~~~ViVIaaTN~~--~-----~Ld~aLlrpGRfd~~I~v~~Pd~~~R~----~IL~~~l~~---------~~l~~d~dl~ 409 (676)
..++.||++||.+ + .+++.|.. ||. .+.+..|+..+|. .++++++.. ..+++ ..+.
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~-~a~~ 210 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTP-QAMD 210 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCH-HHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCH-HHHH
Confidence 2358899999975 1 23444555 664 5555567666553 355544332 12222 2367
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 005815 410 VIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDD 449 (676)
Q Consensus 410 ~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~ 449 (676)
.|....+..+.++|.++++.+...+ ....|+.+|+..
T Consensus 211 ~L~~~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~~ 247 (304)
T 1ojl_A 211 LLIHYDWPGNIRELENAIERAVVLL---TGEYISERELPL 247 (304)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSCG
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhhh
Confidence 7888776668899999999988655 346788877753
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=1.6e-15 Score=174.02 Aligned_cols=219 Identities=19% Similarity=0.192 Sum_probs=138.4
Q ss_pred cccccchhhHHHHHHHHHHhcC-hhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEE----echhHHHH--
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQT-PEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL----SGSEFIEM-- 286 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~-~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i----s~s~~~~~-- 286 (676)
..|+|++++|+.+.-.+ ... +........+...++||+||||||||++|+++|+.++.+++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l--~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALAL--FGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTT--TCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHH--hCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 45889998877663211 111 0001111122233799999999999999999999987655442 11221111
Q ss_pred ---HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC-----------CCCC
Q 005815 287 ---FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-----------GNSG 352 (676)
Q Consensus 287 ---~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-----------~~~~ 352 (676)
+.|... .....+..| ..+|+||||||.+.. . ..+.|+..|+.-. .+.+
T Consensus 373 ~~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l~~-----------~---~q~~Ll~~le~~~i~i~~~g~~~~~~~~ 434 (595)
T 3f9v_A 373 REKGTGEYY-LEAGALVLA---DGGIAVIDEIDKMRD-----------E---DRVAIHEAMEQQTVSIAKAGIVAKLNAR 434 (595)
T ss_dssp SGGGTSSCS-EEECHHHHH---SSSEECCTTTTCCCS-----------H---HHHHHHHHHHSSSEEEESSSSEEEECCC
T ss_pred ecccccccc-ccCCeeEec---CCCcEEeehhhhCCH-----------h---HhhhhHHHHhCCEEEEecCCcEEEecCc
Confidence 011000 001123333 236999999999832 2 3344555554321 1346
Q ss_pred eEEEEecCCcc-------------cccccccCCCccce-EEecCCCCHHHHHHHHHHHhcCCC-------CC--------
Q 005815 353 VIVIAATNRPE-------------ILDSALHRPGRFDR-QVSVGLPDIRGREQILKVHSNNKK-------LD-------- 403 (676)
Q Consensus 353 ViVIaaTN~~~-------------~Ld~aLlrpGRfd~-~I~v~~Pd~~~R~~IL~~~l~~~~-------l~-------- 403 (676)
+.||+|||.+. .+++++++ |||. .+..+.|+.+ ...|.++.+.... ++
T Consensus 435 ~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 435 AAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred eEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 78999999886 89999999 9985 5566677777 7778777665321 00
Q ss_pred -----------ccccHHHHHHh--------------CCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 404 -----------KDVSLSVIATR--------------TPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 404 -----------~d~dl~~La~~--------------t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
.+...+.|... ..+.|.+.+.++++.|...|..+++..|+.+|+.+|+.-+.
T Consensus 512 ~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 512 AYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 11112334433 45789999999999999999999999999999999987553
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=3e-14 Score=170.07 Aligned_cols=199 Identities=21% Similarity=0.304 Sum_probs=138.3
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhhhCCCCC-CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH--
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIP-KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM-- 286 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p-~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~-- 286 (676)
+++|+|++++++.+...+........ ....| .++||+||||||||++|++++..+ +.+|+.++|+++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~----~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK----DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS----CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 36789999999999888765422100 01123 369999999999999999999998 789999999876543
Q ss_pred ----------HhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC--------
Q 005815 287 ----------FVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT-------- 348 (676)
Q Consensus 287 ----------~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~-------- 348 (676)
|+|... ...+....+...+++|||||||.+. ..+++.|+..|+.-.
T Consensus 633 ~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH--------------PDVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp GGGC----------------CHHHHHHHCSSEEEEESSGGGSC--------------HHHHHHHHHHHTTTEECCSSSCC
T ss_pred HHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC--------------HHHHHHHHHHhccCceECCCCCE
Confidence 112211 1233444455567899999999883 246677777776431
Q ss_pred -CCCCeEEEEecCCc--------------------------ccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCC-
Q 005815 349 -GNSGVIVIAATNRP--------------------------EILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK- 400 (676)
Q Consensus 349 -~~~~ViVIaaTN~~--------------------------~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~- 400 (676)
.-.+++||+|||.. ..+.|+|+. ||+..+.+.+|+.++...|++.++...
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 01367899999972 124566666 999999999999999999998876521
Q ss_pred ----------CCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHH
Q 005815 401 ----------KLDKDVSLSVIATRTP--GFSGADLANLMNEAAILA 434 (676)
Q Consensus 401 ----------~l~~d~dl~~La~~t~--G~sgadL~~lv~~A~~~A 434 (676)
.+++ ..+..|+...+ .++.++|+++++.+...+
T Consensus 775 ~~~~~~~~~~~~~~-~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 775 ARLAEKRISLELTE-AAKDFLAERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp HHHHTTTCEEEECH-HHHHHHHHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred HHHHhCCceEEECH-HHHHHHHHcCCCCCCChHHHHHHHHHHHHHH
Confidence 1222 23677777766 678899999998887655
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.47 E-value=1.6e-12 Score=140.89 Aligned_cols=228 Identities=14% Similarity=0.149 Sum_probs=150.3
Q ss_pred CcccccccchhhHHHHHHHH-HHhcChhHHhhhCCCCCCeEEE--EcCCCChHHHHHHHHHHhc---------CCCEEEE
Q 005815 211 VTFDDVAGVDEAKQDFQEIV-QFLQTPEKFAAVGAKIPKGVLL--VGPPGTGKTLLAKAIAGEA---------GVPFFSL 278 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv-~~l~~~~~~~~~g~~~p~gvLL--~GPpGTGKT~LArAlA~e~---------~~p~i~i 278 (676)
...++++|.++..+.+.+.+ ...... ....+..++| +||||+|||+|++++++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34578999999888888776 543211 0023457999 9999999999999999876 5678888
Q ss_pred echh------HHHHHh---h-------hhhHH-HHHHHHHH-hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHH
Q 005815 279 SGSE------FIEMFV---G-------VGASR-VRDLFNKA-KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQL 340 (676)
Q Consensus 279 s~s~------~~~~~~---g-------~~~~~-vr~lF~~A-~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~L 340 (676)
++.. +..... + ..... ...+.... ....|.+|+|||+|.+...+. . ....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~---~~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----I---AAEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----S---CHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----c---chHHHHHH
Confidence 8642 222111 1 11111 22222222 235689999999999953210 0 12345555
Q ss_pred HHHhccCCC-C--CCeEEEEecCCcc---ccc---ccccCCCccceEEecCCCCHHHHHHHHHHHhcCC---CCCccccH
Q 005815 341 LTEMDGFTG-N--SGVIVIAATNRPE---ILD---SALHRPGRFDRQVSVGLPDIRGREQILKVHSNNK---KLDKDVSL 408 (676)
Q Consensus 341 L~~ld~~~~-~--~~ViVIaaTN~~~---~Ld---~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~---~l~~d~dl 408 (676)
+..++.... . .++.+|++|+.++ .++ +.+.+ ||...+.+++++.++..+++..++... ....+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 555443321 2 5788888887665 344 55666 566669999999999999998765421 11123346
Q ss_pred HHHHHhCC------CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 409 SVIATRTP------GFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 409 ~~La~~t~------G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
..+++.+. | +++.+.++++.|...|..++...++.+++..++....
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 77888887 6 5778889999998888888888999999998887643
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.40 E-value=2.5e-13 Score=126.96 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=80.4
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHH
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASR 294 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~ 294 (676)
+++|.+++.+.+.+.+..+. ..+.+|||+||||||||++|++++.... ||+.++|+++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899999988888776542 2245799999999999999999999988 99999999876543
Q ss_pred HHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 295 VRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 295 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
....|+.+. .++|||||+|.+. ...+..+.+++... . ..++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~-----------~~~q~~Ll~~l~~~---~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYS-----------RNIQTGITFIIGKA---E-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCC-----------HHHHHHHHHHHHHH---T-TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCC-----------HHHHHHHHHHHHhC---C-CCCEEEEEecCCC
Confidence 455666653 4699999999994 22333344444432 1 4567888888864
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.40 E-value=4.5e-12 Score=145.72 Aligned_cols=220 Identities=21% Similarity=0.322 Sum_probs=135.3
Q ss_pred cCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCC---EEEEech-
Q 005815 206 EPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSLSGS- 281 (676)
Q Consensus 206 ~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p---~i~is~s- 281 (676)
.+.++.+|++++|++.+++.+...+.. ...++|+||||||||++|+++|+.+... .+.+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 456778899999999998777655531 2469999999999999999999987422 1111110
Q ss_pred -----------------hHHHHHhh--------------------------------------hhhHHHHHHHHH-----
Q 005815 282 -----------------EFIEMFVG--------------------------------------VGASRVRDLFNK----- 301 (676)
Q Consensus 282 -----------------~~~~~~~g--------------------------------------~~~~~vr~lF~~----- 301 (676)
++.+.... ........+|..
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 00000000 000001112210
Q ss_pred ------------------HhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc----c------------C
Q 005815 302 ------------------AKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----G------------F 347 (676)
Q Consensus 302 ------------------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld----~------------~ 347 (676)
.....+.+|||||+|.+. ...+..+..+|..-. + .
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 112345699999999982 233334444443211 0 0
Q ss_pred CCCCCeEEEEecCCc--ccccccccCCCccc---eEEecCC--C-CHHHHHHHHHHHhcC-------CCCCccccHHHHH
Q 005815 348 TGNSGVIVIAATNRP--EILDSALHRPGRFD---RQVSVGL--P-DIRGREQILKVHSNN-------KKLDKDVSLSVIA 412 (676)
Q Consensus 348 ~~~~~ViVIaaTN~~--~~Ld~aLlrpGRfd---~~I~v~~--P-d~~~R~~IL~~~l~~-------~~l~~d~dl~~La 412 (676)
.-..++.||++||+. +.++++|++ ||+ ..+.++. + .......+++.+.+. ..++++ .+..|.
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~e-Al~~Li 324 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKE-AVEEIV 324 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHH-HHHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHH-HHHHHH
Confidence 112357899999987 679999999 996 4566542 2 334455555443321 123222 244554
Q ss_pred Hh---CCCC------cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 005815 413 TR---TPGF------SGADLANLMNEAAILAGRRGKANITLKEIDDSIDR 453 (676)
Q Consensus 413 ~~---t~G~------sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~ 453 (676)
+. ..|- +.+++.++++.|...|..+++..|+.+|+.+|+.+
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 43 2553 78999999999999999899999999999999854
No 82
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.35 E-value=6.5e-13 Score=165.46 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=109.8
Q ss_pred CCCcccccccchhhHHHHHHHHHH-hcC----------hhHHhh------hCCC----------CCCe--EEEEcCCCCh
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQF-LQT----------PEKFAA------VGAK----------IPKG--VLLVGPPGTG 259 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~-l~~----------~~~~~~------~g~~----------~p~g--vLL~GPpGTG 259 (676)
..++|+||.|.+++|+.+.+.+.+ +.. ++.|+. .|.. +|+| +|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 348999999999999999998887 422 445555 3433 5667 9999999999
Q ss_pred HHHHHHHHHHhc---CCCEEEEechhHH------------HHHhhh----hhHHHHHHHHHHhhCCCeEEEEcCCccccc
Q 005815 260 KTLLAKAIAGEA---GVPFFSLSGSEFI------------EMFVGV----GASRVRDLFNKAKANSPCLVFIDEIDAVGR 320 (676)
Q Consensus 260 KT~LArAlA~e~---~~p~i~is~s~~~------------~~~~g~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 320 (676)
||+||++++.+. |-|.+.++..+.. +.+++. +++.++.+|..|+..+||+||+|++|+|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999877 5676666665433 334455 788899999999999999999999999998
Q ss_pred cCC---CCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 321 QRG---TGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 321 ~r~---~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
.++ ........-..+.++++|.+|++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 742 211111234566899999999998777788888 66764
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.34 E-value=2e-12 Score=121.00 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=79.7
Q ss_pred ccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhhh
Q 005815 215 DVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGVG 291 (676)
Q Consensus 215 dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~~ 291 (676)
+++|.+++.+.+.+.+..+.. .+..|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 678999988888877765422 24569999999999999999999987 78999 999876543
Q ss_pred hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 292 ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 292 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
......|..+. .++|||||||.+. .. ....|+..+.. ...++.+|++||.+
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~-----------~~---~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLT-----------RE---QQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSC-----------HH---HHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCC-----------HH---HHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 23455676663 3699999999994 22 23344444432 23457788888864
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.34 E-value=2.1e-11 Score=129.83 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=113.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEechhHHHHHhhhhhHHHHHHHH
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSLSGSEFIEMFVGVGASRVRDLFN 300 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~p------------------------~i~is~s~~~~~~~g~~~~~vr~lF~ 300 (676)
+.+.++||+||||+|||++|+++|+.+.++ ++.++..+- ....+.+.++++++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHH
Confidence 567789999999999999999999987542 333332100 00123345777777
Q ss_pred HHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccc
Q 005815 301 KAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFD 376 (676)
Q Consensus 301 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd 376 (676)
.+.. ....|++|||+|.+. ....|.|+..++.. ..++++|.+||.++.+.+.+++ |+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc- 159 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEEP--PAETWFFLATREPERLLATLRS--RC- 159 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TS-
T ss_pred HHhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cc-
Confidence 7653 246899999999994 23567888888753 3467888888999999999998 87
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 005815 377 RQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEA 430 (676)
Q Consensus 377 ~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A 430 (676)
..+.+++|+.++..++++... .++ +..+..+++.+.| +.+.+.++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eeeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 579999999999999998775 232 3346778887766 555555555443
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.30 E-value=7.5e-12 Score=105.06 Aligned_cols=75 Identities=28% Similarity=0.490 Sum_probs=72.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHc
Q 005815 382 GLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVA 456 (676)
Q Consensus 382 ~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~ 456 (676)
|+||.++|.+||+.|+++..+..++|+..|+..|+||||+||.++|++|++.|.+++...|+.+||..|++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999988889999999999999999999999999999999999999999999999999865
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.28 E-value=8.1e-12 Score=107.01 Aligned_cols=77 Identities=27% Similarity=0.475 Sum_probs=73.0
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcC
Q 005815 381 VGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAG 457 (676)
Q Consensus 381 v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g 457 (676)
-.+||.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|.++....|+++||..|+.++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999999988899999999999999999999999999999999999999999999999998764
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.23 E-value=1.9e-11 Score=105.18 Aligned_cols=78 Identities=24% Similarity=0.496 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcCCCc
Q 005815 385 DIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGMEGTK 462 (676)
Q Consensus 385 d~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~~~~ 462 (676)
|.++|.+||+.|+++.++..++|+..||..|+||||+||.++|++|++.|.+++...|+++||..|+.++..|.+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 668999999999999999899999999999999999999999999999999999999999999999999998876543
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.21 E-value=3.7e-11 Score=130.75 Aligned_cols=208 Identities=20% Similarity=0.288 Sum_probs=131.9
Q ss_pred ccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH--
Q 005815 213 FDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF-- 287 (676)
Q Consensus 213 f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~-- 287 (676)
+++++|.....+++.+.+..+... ...++|+|++||||+++|+++.... +.||+.++|+.+.+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 457888888777777777654332 2458999999999999999998876 4799999998764431
Q ss_pred ---hhhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc--cCCC----CC
Q 005815 288 ---VGVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFTG----NS 351 (676)
Q Consensus 288 ---~g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld--~~~~----~~ 351 (676)
.|... ......|+.|.. .+||||||+.+. ...+..+.++|..-. .... ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELS-----------LEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 22110 012345665543 599999999993 334444444444311 0111 13
Q ss_pred CeEEEEecCCcccccccccCCCccce-------EEecCCCCHHHHHH----HHHHHhc----CCC-----CCccccHHHH
Q 005815 352 GVIVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGREQ----ILKVHSN----NKK-----LDKDVSLSVI 411 (676)
Q Consensus 352 ~ViVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~~----IL~~~l~----~~~-----l~~d~dl~~L 411 (676)
++.||+|||..-. .+.+.|+|.. .+.+..|+..+|.+ ++++++. ... ++++ .+..|
T Consensus 272 ~~rii~at~~~l~---~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~l 347 (387)
T 1ny5_A 272 NVRILAATNRNIK---ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKS-AQELL 347 (387)
T ss_dssp CCEEEEEESSCHH---HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHH-HHHHH
T ss_pred cEEEEEeCCCCHH---HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHH-HHHHH
Confidence 5789999997421 2333444432 45566688877643 3333332 111 2222 36677
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 412 ATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 412 a~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
....+..+.++|+++++.|...+ ....|+.+|+...+
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 77777678899999999998765 34689999987654
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=5.9e-11 Score=114.49 Aligned_cols=135 Identities=18% Similarity=0.195 Sum_probs=83.9
Q ss_pred CCCCCcccccccc-hhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 005815 207 PNTGVTFDDVAGV-DEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGS 281 (676)
Q Consensus 207 ~~~~~~f~dv~G~-~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s 281 (676)
+..+.+|+++++. +..++.+..+..++.+. .....++++|+||||||||+|++++++.+ |..++.++..
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3456789999874 33444444444443322 12235679999999999999999999877 7788889988
Q ss_pred hHHHHHhhhhhHH-HHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 282 EFIEMFVGVGASR-VRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 282 ~~~~~~~g~~~~~-vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
++.+.+....... ....++.. ..|.+|+|||++..+ .+......+.+++.... ..+..+|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn 141 (180)
T 3ec2_A 77 DLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTIITTN 141 (180)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEEEECC
T ss_pred HHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEEEEcC
Confidence 8776543221110 11222222 357899999998652 23445556666665542 12356777777
Q ss_pred Cc
Q 005815 361 RP 362 (676)
Q Consensus 361 ~~ 362 (676)
.+
T Consensus 142 ~~ 143 (180)
T 3ec2_A 142 YS 143 (180)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 90
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=1.4e-10 Score=122.24 Aligned_cols=142 Identities=11% Similarity=0.172 Sum_probs=104.1
Q ss_pred cchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc------CCCEEEEechhHHHHHhhhh
Q 005815 218 GVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSLSGSEFIEMFVGVG 291 (676)
Q Consensus 218 G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~------~~p~i~is~s~~~~~~~g~~ 291 (676)
|++++.+.|+..+.. + + +..+|||||||+|||++|+++|+.+ ...++.++.++ ...+
T Consensus 1 g~~~~~~~L~~~i~~----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHC----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 566777766665532 1 1 3469999999999999999999874 34677777542 0123
Q ss_pred hHHHHHHHHHHhhC----CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccc
Q 005815 292 ASRVRDLFNKAKAN----SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDS 367 (676)
Q Consensus 292 ~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~ 367 (676)
...+|++++.+... ...|+||||+|.+. ....|.|+..|+... .++++|.+|+.++.+.|
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LEep~--~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALEEPP--EYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHHSCC--TTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHhCCC--CCeEEEEEECChHhChH
Confidence 35678888877543 23699999999993 234678888888543 45677778888999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHh
Q 005815 368 ALHRPGRFDRQVSVGLPDIRGREQILKVHS 397 (676)
Q Consensus 368 aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l 397 (676)
++++ | .+.+++|+.++..++++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 7 88999999999999888776
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.10 E-value=2.2e-10 Score=148.65 Aligned_cols=138 Identities=20% Similarity=0.357 Sum_probs=96.9
Q ss_pred CCeEEEEcCCCChHHHHHHH-HHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHh---------------hCCCeEE
Q 005815 247 PKGVLLVGPPGTGKTLLAKA-IAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAK---------------ANSPCLV 310 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArA-lA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~---------------~~~P~IL 310 (676)
.+++||+||||||||++|+. ++...+.+++.++++.... ...+...++... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 46899999999999999954 5555577888888765432 223444444321 2335799
Q ss_pred EEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-C-------CCeEEEEecCCcc-----cccccccCCCccce
Q 005815 311 FIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-N-------SGVIVIAATNRPE-----ILDSALHRPGRFDR 377 (676)
Q Consensus 311 fIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-~-------~~ViVIaaTN~~~-----~Ld~aLlrpGRfd~ 377 (676)
||||+|.-...+. +.....+.+.+++.. .++.. . .++.+|||||+|. .|+++++| || .
T Consensus 1341 FiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 9999987533221 223445666776642 23221 1 2589999999995 79999999 99 8
Q ss_pred EEecCCCCHHHHHHHHHHHhcC
Q 005815 378 QVSVGLPDIRGREQILKVHSNN 399 (676)
Q Consensus 378 ~I~v~~Pd~~~R~~IL~~~l~~ 399 (676)
.+.++.|+.+++..|+..+++.
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999887753
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.03 E-value=3.5e-10 Score=95.90 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcC
Q 005815 385 DIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAG 457 (676)
Q Consensus 385 d~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g 457 (676)
|.++|.+||+.|+++.++.+++|+..||..|+||||+||.++|++|++.|.+++...|+++||..|+.++.++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6889999999999999888899999999999999999999999999999999999999999999999998654
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.99 E-value=8.5e-10 Score=108.06 Aligned_cols=104 Identities=23% Similarity=0.259 Sum_probs=66.6
Q ss_pred CCCcccccccchh-hHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHH
Q 005815 209 TGVTFDDVAGVDE-AKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFI 284 (676)
Q Consensus 209 ~~~~f~dv~G~~~-~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~ 284 (676)
...+|+++++.+. .++.+..+..++.... ....+++++|+||||||||+|++++++++ +.+++.++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3568999998763 3334444444433221 00124789999999999999999999987 7889999998877
Q ss_pred HHHhhhh-hHHHHHHHHHHhhCCCeEEEEcCCcccc
Q 005815 285 EMFVGVG-ASRVRDLFNKAKANSPCLVFIDEIDAVG 319 (676)
Q Consensus 285 ~~~~g~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~ 319 (676)
..+.... ...+...+..... +.+|+|||++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 6543211 1112233333332 3599999997763
No 94
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.92 E-value=2.8e-10 Score=96.46 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHcCcC
Q 005815 387 RGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIVAGME 459 (676)
Q Consensus 387 ~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~~g~~ 459 (676)
++|.+||+.|+++.++.+++|+..||..|+||||+||.++|++|++.|.+++...|+++||..|+.++..+..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4789999999999888889999999999999999999999999999999999999999999999998865543
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.89 E-value=6.5e-08 Score=101.84 Aligned_cols=191 Identities=14% Similarity=0.124 Sum_probs=116.0
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH----
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF---- 283 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~---- 283 (676)
.+....+.++|.++..+.|.+ +.. +.++|+||+|+|||+|++.++++.+.+++++++...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~----l~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG----LRA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH----TCS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH----hcC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 344566788998876665554 322 369999999999999999999998777888887642
Q ss_pred -------HHHHhhh-----------------------------------hhHHHHHHHHHHhhC--CCeEEEEcCCcccc
Q 005815 284 -------IEMFVGV-----------------------------------GASRVRDLFNKAKAN--SPCLVFIDEIDAVG 319 (676)
Q Consensus 284 -------~~~~~g~-----------------------------------~~~~vr~lF~~A~~~--~P~ILfIDEID~l~ 319 (676)
...+... ....+..+++..... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 1110000 011234455444432 38999999999985
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccccc-----cc--CCCccceEEecCCCCHHHHHHH
Q 005815 320 RQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSA-----LH--RPGRFDRQVSVGLPDIRGREQI 392 (676)
Q Consensus 320 ~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~a-----Ll--rpGRfd~~I~v~~Pd~~~R~~I 392 (676)
... .......+..+.... .++.+|.+++....+... .. -.||+...+.+.+.+.++..++
T Consensus 151 ~~~-------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 151 KLR-------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp GCT-------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred ccC-------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 310 111123344443321 246666666543222211 01 1246667899999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHH
Q 005815 393 LKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNE 429 (676)
Q Consensus 393 L~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~ 429 (676)
+...+.......+. ...+...+.|+ +.-+..++..
T Consensus 218 l~~~~~~~~~~~~~-~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 218 LRRGFQEADIDFKD-YEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHTCCCCC-HHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHcCCCCCc-HHHHHHHhCCC-HHHHHHHHHH
Confidence 98876533332222 37888888885 5556555543
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.85 E-value=2e-08 Score=110.55 Aligned_cols=209 Identities=17% Similarity=0.104 Sum_probs=121.8
Q ss_pred cccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHH-HHhcCCCEEEEechhHHHHHhhhhhH-
Q 005815 216 VAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAI-AGEAGVPFFSLSGSEFIEMFVGVGAS- 293 (676)
Q Consensus 216 v~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAl-A~e~~~p~i~is~s~~~~~~~g~~~~- 293 (676)
|.|++.+|..+.-.+ +....+ .+-.-+|||.|+||| ||++|+++ +..+.. .++.++.. ....+....
T Consensus 215 I~G~e~vK~aLll~L--~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL--FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHH--TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHH--cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCC--CCccCceEEE
Confidence 789999877664332 111111 112236999999999 99999999 665533 22332210 000000000
Q ss_pred -------HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhcc-------CCCCCCeEEEEec
Q 005815 294 -------RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-------FTGNSGVIVIAAT 359 (676)
Q Consensus 294 -------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~-------~~~~~~ViVIaaT 359 (676)
.-...+..|.. .++|||||+.+- ..++..|++.|+. ..-+.++.||||+
T Consensus 284 r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~--------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADG---GILAVDHLEGAP--------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp EESSSEEEEECHHHHTTT---SEEEEECCTTCC--------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred EcCCCcccCCCeeEEcCC---CeeehHhhhhCC--------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 00122333433 499999999983 2244455555542 1113468999999
Q ss_pred CCcc-----------cccccccCCCccceEEe-cCCCCHHH-------------HHHHHHHHhc----CCCCCcccc--H
Q 005815 360 NRPE-----------ILDSALHRPGRFDRQVS-VGLPDIRG-------------REQILKVHSN----NKKLDKDVS--L 408 (676)
Q Consensus 360 N~~~-----------~Ld~aLlrpGRfd~~I~-v~~Pd~~~-------------R~~IL~~~l~----~~~l~~d~d--l 408 (676)
|... .|+++++. |||..+. ++.|+.+. .++++. +++ ...+++++. +
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI 423 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRL 423 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHH
T ss_pred CcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHH
Confidence 9865 68889999 9998544 45665433 122222 222 112222211 0
Q ss_pred HH----H--H--H------hCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005815 409 SV----I--A--T------RTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRIV 455 (676)
Q Consensus 409 ~~----L--a--~------~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v~ 455 (676)
.. + . . ...|.|++.+..+++-|...|.-+++..|+.+|+.+|+.-+.
T Consensus 424 ~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 424 EHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 00 0 1 0 245889999999999999999999999999999999987654
No 97
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.85 E-value=4.6e-09 Score=113.46 Aligned_cols=193 Identities=21% Similarity=0.329 Sum_probs=118.4
Q ss_pred cccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhHHHH-----
Q 005815 214 DDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSLSGSEFIEM----- 286 (676)
Q Consensus 214 ~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~--p~i~is~s~~~~~----- 286 (676)
.+++|......++.+.+..+... ...++++|++||||+++|+++....+. +|+.++|+.+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45788888888887777654332 235999999999999999999887643 3999999865322
Q ss_pred Hhhhhh-------HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhc--cCCC----CCCe
Q 005815 287 FVGVGA-------SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFTG----NSGV 353 (676)
Q Consensus 287 ~~g~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld--~~~~----~~~V 353 (676)
..|... +.....|+.|.. .+||||||+.+. ...+..+-.+++.-. .... ..++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCC-----------HHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 122110 011235665543 499999999993 333444444444321 0111 1257
Q ss_pred EEEEecCCcccccccccCCCccce-------EEecCCCCHHHHH----HHHHHHhcC----C-----CCCccccHHHHHH
Q 005815 354 IVIAATNRPEILDSALHRPGRFDR-------QVSVGLPDIRGRE----QILKVHSNN----K-----KLDKDVSLSVIAT 413 (676)
Q Consensus 354 iVIaaTN~~~~Ld~aLlrpGRfd~-------~I~v~~Pd~~~R~----~IL~~~l~~----~-----~l~~d~dl~~La~ 413 (676)
.+|++||..- . .+...|+|.. .+.+..|+..+|. .++++++.. . .++++ .+..|..
T Consensus 265 rii~at~~~l--~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~~L~~ 340 (368)
T 3dzd_A 265 RVISATNKNL--E-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEE-TKEYLMK 340 (368)
T ss_dssp EEEEEESSCH--H-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHH-HHHHHHT
T ss_pred EEEEecCCCH--H-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-HHHHHHh
Confidence 8999999542 1 2333445433 4555567776663 334444321 1 13333 3677777
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 005815 414 RTPGFSGADLANLMNEAAILA 434 (676)
Q Consensus 414 ~t~G~sgadL~~lv~~A~~~A 434 (676)
..+.-+.++|++++..|...+
T Consensus 341 ~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 341 QEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCCTTHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHHHhC
Confidence 776668899999999988654
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.84 E-value=2.5e-07 Score=97.23 Aligned_cols=193 Identities=17% Similarity=0.157 Sum_probs=114.4
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH----
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI---- 284 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~---- 284 (676)
+...-+.++|.+...+.|.+.+.. + +.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 444567789999887777765542 1 4799999999999999999999875 6777765432
Q ss_pred --------HHHhh--------------------hh----hHHHHHHHHH----HhhCCCeEEEEcCCccccccCCCCCCC
Q 005815 285 --------EMFVG--------------------VG----ASRVRDLFNK----AKANSPCLVFIDEIDAVGRQRGTGIGG 328 (676)
Q Consensus 285 --------~~~~g--------------------~~----~~~vr~lF~~----A~~~~P~ILfIDEID~l~~~r~~~~~~ 328 (676)
..+.. .. ...+..+++. +....|.+|+|||++.+..... .
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~ 146 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----R 146 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----T
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----c
Confidence 11100 00 0122333322 2222489999999999853100 0
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccc-----ccc--CCCccceEEecCCCCHHHHHHHHHHHhcCCC
Q 005815 329 GNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDS-----ALH--RPGRFDRQVSVGLPDIRGREQILKVHSNNKK 401 (676)
Q Consensus 329 ~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~-----aLl--rpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~ 401 (676)
........+..++... .++.+|.++.....+.. ... -.||+...+.+.+.+.++-.+++...+....
T Consensus 147 ~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 147 GGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp TTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 1122233333333321 35556655544321111 111 1246667899999999999999988765443
Q ss_pred CC-ccccHHHHHHhCCCCcHHHHHHHHH
Q 005815 402 LD-KDVSLSVIATRTPGFSGADLANLMN 428 (676)
Q Consensus 402 l~-~d~dl~~La~~t~G~sgadL~~lv~ 428 (676)
.. .+..+..+...+.|+ +.-+..++.
T Consensus 221 ~~~~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp CCCCHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 22 233467788888885 454555544
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.82 E-value=3.9e-09 Score=99.45 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=66.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRG 323 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~ 323 (676)
...++|+||+|+|||+|++++++.+ |..++++++.++... +....|.+|+|||++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~--- 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN--- 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh---
Confidence 4569999999999999999999987 777888988776532 1123578999999988631
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCCCCCe-EEEEecCCccccc--ccccCCCccceEEe
Q 005815 324 TGIGGGNDEREQTLNQLLTEMDGFTGNSGV-IVIAATNRPEILD--SALHRPGRFDRQVS 380 (676)
Q Consensus 324 ~~~~~~~~~~~~~l~~LL~~ld~~~~~~~V-iVIaaTN~~~~Ld--~aLlrpGRfd~~I~ 380 (676)
.. ++.+..++..+. ..+.. +||++...|..+. +.+.+ |+..-..
T Consensus 98 -------~~-~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~ 144 (149)
T 2kjq_A 98 -------EE-QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLV 144 (149)
T ss_dssp -------HH-HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEE
T ss_pred -------HH-HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCee
Confidence 11 444555555432 22222 4554433555443 56666 6654333
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.74 E-value=2.2e-09 Score=113.15 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=68.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC--EEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTG 325 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p--~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~ 325 (676)
+.++|+||||+|||+||.++|.+.+.+ |+.+...+..+.+.......+..+++...... +||||+++.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 347999999999999999999875544 55552122222221223334445555555544 99999999995433210
Q ss_pred CCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccc
Q 005815 326 IGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSAL 369 (676)
Q Consensus 326 ~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aL 369 (676)
+......+.+.+++..|.++....++.+|.++| +...|+++
T Consensus 202 --s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 202 --TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred --cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 000111345666666666665556788888888 45555553
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.73 E-value=1.1e-08 Score=107.91 Aligned_cols=101 Identities=24% Similarity=0.320 Sum_probs=63.1
Q ss_pred CCcccccccch-hhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhHH
Q 005815 210 GVTFDDVAGVD-EAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSEFI 284 (676)
Q Consensus 210 ~~~f~dv~G~~-~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~~~ 284 (676)
+.+|+++.+.+ ...+.+..+..++... ....+++++|+||||||||+||+++|.++ +.+++.++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 46899998755 3233333333343321 11125789999999999999999999865 4899999999887
Q ss_pred HHHhhhh-hHHHHHHHHHHhhCCCeEEEEcCCccc
Q 005815 285 EMFVGVG-ASRVRDLFNKAKANSPCLVFIDEIDAV 318 (676)
Q Consensus 285 ~~~~g~~-~~~vr~lF~~A~~~~P~ILfIDEID~l 318 (676)
..+.... .......+.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 6544321 111222222222 3469999999765
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.56 E-value=4e-08 Score=97.11 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=82.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh--------cC-CCEEEEechhHHHHHh----------hh-----hhHHHHHHHHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGE--------AG-VPFFSLSGSEFIEMFV----------GV-----GASRVRDLFNKA 302 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e--------~~-~p~i~is~s~~~~~~~----------g~-----~~~~vr~lF~~A 302 (676)
+--.|++|+||||||++|.+.+.. .| .+++..++.++..... .. ....+.+.+..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 345899999999999999886433 35 7777777665532111 00 11222322211
Q ss_pred hhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecC
Q 005815 303 KANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 303 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~ 382 (676)
.....+||+|||++.+.+.+.... +. ..++..+.. ....++-+|.+|+.++.|+.++++ |++.++++.
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~----e~-----~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~ 151 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGS----KI-----PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIA 151 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTC----CC-----CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEE
T ss_pred cccCceEEEEEChhhhccCccccc----hh-----HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEc
Confidence 233468999999999976543211 11 124555543 234567778888889999999888 999999998
Q ss_pred CCCHHH
Q 005815 383 LPDIRG 388 (676)
Q Consensus 383 ~Pd~~~ 388 (676)
.|....
T Consensus 152 ~~~~~~ 157 (199)
T 2r2a_A 152 SNKMGM 157 (199)
T ss_dssp ECSSCC
T ss_pred CcccCc
Confidence 765443
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.55 E-value=1.2e-06 Score=114.20 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=110.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGI 326 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 326 (676)
..|+++.||+|||||.+++++|+.+|.+++.++|++-.+ .+.+..+|..+... .+++++||++.+-
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~------- 710 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLD------- 710 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSC-------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcC-------
Confidence 357999999999999999999999999999999987443 24456677666543 3799999999883
Q ss_pred CCCChHHHHHHHHHHHHhc----c-----------CCCCCCeEEEEecCC----cccccccccCCCccceEEecCCCCHH
Q 005815 327 GGGNDEREQTLNQLLTEMD----G-----------FTGNSGVIVIAATNR----PEILDSALHRPGRFDRQVSVGLPDIR 387 (676)
Q Consensus 327 ~~~~~~~~~~l~~LL~~ld----~-----------~~~~~~ViVIaaTN~----~~~Ld~aLlrpGRfd~~I~v~~Pd~~ 387 (676)
.+...++.+.+..+. . +.-+.++.|++|.|. ...|++++.+ || +.+.+..||.+
T Consensus 711 ----~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 711 ----EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 344444444333221 1 112345678888883 3468889988 88 78999999998
Q ss_pred HHHHHHHHHhcCCCCCccc-----cH-HHHHHhC-----CCCcHHHHHHHHHHHHHHHH
Q 005815 388 GREQILKVHSNNKKLDKDV-----SL-SVIATRT-----PGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 388 ~R~~IL~~~l~~~~l~~d~-----dl-~~La~~t-----~G~sgadL~~lv~~A~~~A~ 435 (676)
...+|+-.... ....... .+ ..+.+.. ..|.-+.+..+++.|...-.
T Consensus 784 ~i~ei~l~s~G-f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr 841 (2695)
T 4akg_A 784 TIAEMILQIMG-FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLIS 841 (2695)
T ss_dssp HHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhc
Confidence 88887533221 1111111 11 1111222 23677889888887765543
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.55 E-value=5.9e-08 Score=105.04 Aligned_cols=119 Identities=21% Similarity=0.211 Sum_probs=77.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccc-c
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGR-Q 321 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~-~ 321 (676)
+.+.+..++|+||||+|||+|++++++..+..++.+...+-. . -|........+++|+||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~----------~--~~~lg~~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR----------L--NFELGVAIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT----------H--HHHHGGGTTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh----------H--HHHHHHhcchhHHHHHHHHHHHHHH
Confidence 566667799999999999999999999887766654332210 0 01111112346789999999864 2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCC
Q 005815 322 RGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGL 383 (676)
Q Consensus 322 r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~ 383 (676)
+.. ..+. .. .....+...+|| .+.|+.+||+++.+ +++++|||++..+....
T Consensus 233 r~l--~~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDL--PSGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTC--CCCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhc--cccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 221 1111 11 123444555554 35678889999999 79999999998777643
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.50 E-value=2.8e-07 Score=116.53 Aligned_cols=118 Identities=17% Similarity=0.218 Sum_probs=82.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH----HHHHhh------------hhhHHHHHHHHHHh
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF----IEMFVG------------VGASRVRDLFNKAK 303 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~----~~~~~g------------~~~~~vr~lF~~A~ 303 (676)
|.+.+++++|+||||||||+||.+++.++ |..+.+++..+. .....| ..++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46677889999999999999999998876 556666665532 122222 22355667777788
Q ss_pred hCCCeEEEEcCCccccccC---CCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 304 ANSPCLVFIDEIDAVGRQR---GTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 304 ~~~P~ILfIDEID~l~~~r---~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
..+|++|||||++.+.+.+ +....+......+.+.++|.+|.++....+++||.+-.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 8999999999999987642 22111112224567888999998887777777777643
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.24 E-value=7.7e-06 Score=86.71 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=114.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CC-CEEEEechhHHHHHhhhhhHHHHHHHHHHhh----CCCeEEEEcCCc
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFFSLSGSEFIEMFVGVGASRVRDLFNKAKA----NSPCLVFIDEID 316 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~---~~-p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID 316 (676)
+.+..+|||||+|.||++.+++++..+ +. ++..+.... ...++++++.+.. ....|++|||+|
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 356679999999999999999998865 32 322221110 1234455544432 345799999999
Q ss_pred c-ccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC-----cccccccccCCCccceEEecCCCCHHHHH
Q 005815 317 A-VGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR-----PEILDSALHRPGRFDRQVSVGLPDIRGRE 390 (676)
Q Consensus 317 ~-l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~-----~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~ 390 (676)
. +.. ...+.|+..++...+ +.++|+++++. ...+-+++.+ |. .++.+.+|+..+..
T Consensus 87 ~kl~~--------------~~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 87 NGPNA--------------AINEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp SCCCT--------------THHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CCCCh--------------HHHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 8 631 145667777765432 33444444432 2346677776 55 68899999999999
Q ss_pred HHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005815 391 QILKVHSNNKKLD-KDVSLSVIATRTPGFSGADLANLMNEAAILAGRRGKANITLKEIDDSIDRI 454 (676)
Q Consensus 391 ~IL~~~l~~~~l~-~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai~~v 454 (676)
..++..++..++. ++..+..|+..+.| +.+++.+.+...... .+...||.+++.+.+...
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~---~~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLL---WPDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH---CTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHh---cCCCCCCHHHHHHHHhhh
Confidence 8888888766643 22336777777655 455555555554443 345589999998887654
No 107
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.17 E-value=4.8e-06 Score=92.23 Aligned_cols=127 Identities=17% Similarity=0.291 Sum_probs=98.8
Q ss_pred CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEe---------cC---CcccccccccCCCc
Q 005815 307 PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAA---------TN---RPEILDSALHRPGR 374 (676)
Q Consensus 307 P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaa---------TN---~~~~Ld~aLlrpGR 374 (676)
|.|+||||+|.+. ....+.|+..|+..... ++|+++ ++ .++.++|.+++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~~--~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESSIAP--IVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTSTTCC--EEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhccCCC--EEEEecCCccccccccccccccccCChhHHh--h
Confidence 4699999999993 34778889988865443 555555 33 26678889999 9
Q ss_pred cceEEecCCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 005815 375 FDRQVSVGLPDIRGREQILKVHSNNKK--LDKDVSLSVIATRT-PGFSGADLANLMNEAAILAGRRGKANITLKEIDDSI 451 (676)
Q Consensus 375 fd~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~La~~t-~G~sgadL~~lv~~A~~~A~r~~~~~It~~di~~Ai 451 (676)
|.. +.+++|+.++..++++..+.... ++++ .+..+++.+ .| +++..-++++.|...|..+++..|+.+|+.+++
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~-~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEE-ALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEIS 434 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHH
Confidence 966 69999999999999998765333 3333 366777776 55 788888999999999999999999999999998
Q ss_pred HHH
Q 005815 452 DRI 454 (676)
Q Consensus 452 ~~v 454 (676)
.-+
T Consensus 435 ~~~ 437 (456)
T 2c9o_A 435 ELF 437 (456)
T ss_dssp HHS
T ss_pred HHh
Confidence 654
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.13 E-value=8.4e-07 Score=87.72 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 276 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i 276 (676)
.+++||+||||||||++|.++|+.+...++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 357999999999999999999999865443
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.12 E-value=7.8e-06 Score=107.38 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=89.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechhHHHHHhhhhhHHHHHHHHHH----h------------hCCCeE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSLSGSEFIEMFVGVGASRVRDLFNKA----K------------ANSPCL 309 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~-~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A----~------------~~~P~I 309 (676)
.+.+||+||||||||.+++.....+ +.+++.++++.-.. +..+...++.- + .....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 3569999999999998876654443 66777887765332 23333444321 0 122369
Q ss_pred EEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCC-------CCCeEEEEecCCcc-----cccccccCCCccce
Q 005815 310 VFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTG-------NSGVIVIAATNRPE-----ILDSALHRPGRFDR 377 (676)
Q Consensus 310 LfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~-------~~~ViVIaaTN~~~-----~Ld~aLlrpGRfd~ 377 (676)
+||||++--.... -+.......+.+++..-.-+.. -.++.+|||+|.|. .++++++| ||.
T Consensus 1378 lFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~- 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP- 1449 (3245)
T ss_dssp EEETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-
T ss_pred EEecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-
Confidence 9999997542111 1223345566666654221111 13578999999883 58999999 884
Q ss_pred EEecCCCCHHHHHHHHHHHh
Q 005815 378 QVSVGLPDIRGREQILKVHS 397 (676)
Q Consensus 378 ~I~v~~Pd~~~R~~IL~~~l 397 (676)
.+.++.|+.+....|+..++
T Consensus 1450 vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 69999999999999976554
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.07 E-value=1.1e-05 Score=77.89 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 276 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i 276 (676)
.+.|.||+|+|||||++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 3789999999999999999998865544
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.91 E-value=1.6e-05 Score=78.00 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
..-++|+||||+|||+|++.+|...+.++++++...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 344899999999999999999986677888887653
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.89 E-value=2.2e-05 Score=77.24 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
...++|+||||+|||+|++.++... +.+++.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3458999999999999999999654 556666654
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.89 E-value=1.8e-05 Score=81.39 Aligned_cols=27 Identities=41% Similarity=0.529 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGV 273 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~ 273 (676)
.++++|+||||||||++|+++|+..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 357999999999999999999997543
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.86 E-value=3.2e-05 Score=76.97 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHh--c-------CCCEEEEechh------HHHH--Hhhhh---------------h
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGE--A-------GVPFFSLSGSE------FIEM--FVGVG---------------A 292 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e--~-------~~p~i~is~s~------~~~~--~~g~~---------------~ 292 (676)
....-++|+||||+|||+|++.++.. . +...++++..+ +... ..+.. .
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 33345899999999999999999985 2 45677777654 1111 01110 1
Q ss_pred H----HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc
Q 005815 293 S----RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363 (676)
Q Consensus 293 ~----~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~ 363 (676)
. .+..+.+......|.+|+|||+..+....-.+. +...++++.+.+++..+..+....++.||.+++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 1 122233444557899999999998864321100 000222223444444443333333556777666443
No 115
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.85 E-value=5.8e-05 Score=99.32 Aligned_cols=126 Identities=20% Similarity=0.254 Sum_probs=89.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIG 327 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 327 (676)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|.-+... .+..++||++.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 467899999999999999999999999999999874432 3345556555432 369999999988
Q ss_pred CCChHHHHHHHHHHHHh-------------c-c--CCCCCCeEEEEecCC----cccccccccCCCccceEEecCCCCHH
Q 005815 328 GGNDEREQTLNQLLTEM-------------D-G--FTGNSGVIVIAATNR----PEILDSALHRPGRFDRQVSVGLPDIR 387 (676)
Q Consensus 328 ~~~~~~~~~l~~LL~~l-------------d-~--~~~~~~ViVIaaTN~----~~~Ld~aLlrpGRfd~~I~v~~Pd~~ 387 (676)
..+...++.+.+..+ + | +.-+.++.|++|.|. ...|+++|.. || +.|.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 233333433333311 1 1 112345778888883 3468889998 88 77999999998
Q ss_pred HHHHHHH
Q 005815 388 GREQILK 394 (676)
Q Consensus 388 ~R~~IL~ 394 (676)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877753
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.83 E-value=7.2e-05 Score=74.68 Aligned_cols=110 Identities=26% Similarity=0.264 Sum_probs=62.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHH--Hh--cCCCEEEEechhHHHH------Hhhh--------------------------
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIA--GE--AGVPFFSLSGSEFIEM------FVGV-------------------------- 290 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA--~e--~~~p~i~is~s~~~~~------~~g~-------------------------- 290 (676)
..-+.|.||+|+|||+|++.++ .. .+...+.++....... .++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSE 109 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----------
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccc
Confidence 3459999999999999999998 33 3455555544321110 0000
Q ss_pred ----------hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 291 ----------GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 291 ----------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
.......+........|.+|+|||+.++..... ......+.+..++..+. ..++.||.+|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii~vtH 180 (251)
T 2ehv_A 110 EKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTILTTE 180 (251)
T ss_dssp --------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEEEEC
T ss_pred cceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEEEEEC
Confidence 011122233334457899999999988864221 12334455666776663 23456777777
Q ss_pred Ccccc
Q 005815 361 RPEIL 365 (676)
Q Consensus 361 ~~~~L 365 (676)
..+..
T Consensus 181 ~~~~~ 185 (251)
T 2ehv_A 181 APDPQ 185 (251)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 75554
No 117
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.76 E-value=0.00031 Score=79.61 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=96.3
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEechh
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSLSGSE 282 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~p~i~is~s~ 282 (676)
+.....++|.+...+.|.+.+... ...++-++|+||+|+|||+||+.+++.. ...++.++.+.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 344567899998877776654321 0123459999999999999999997532 11234433321
Q ss_pred -----HHHHHh------hh----------hhHHHHHHHHHH-h-hCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHH
Q 005815 283 -----FIEMFV------GV----------GASRVRDLFNKA-K-ANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQ 339 (676)
Q Consensus 283 -----~~~~~~------g~----------~~~~vr~lF~~A-~-~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~ 339 (676)
+...+. +. ....+...+... . ...|.+|+||+++...
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------- 249 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------- 249 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--------------------
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--------------------
Confidence 111111 10 011122222222 2 2368999999996531
Q ss_pred HHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCc
Q 005815 340 LLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFS 419 (676)
Q Consensus 340 LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~s 419 (676)
.+.. + ..+..||.||........ . . +.......+...+.++-.+++..++.............|++.+.|.
T Consensus 250 ~l~~---l--~~~~~ilvTsR~~~~~~~-~-~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~- 320 (591)
T 1z6t_A 250 VLKA---F--DSQCQILLTTRDKSVTDS-V-M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS- 320 (591)
T ss_dssp HHHT---T--CSSCEEEEEESCGGGGTT-C-C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-
T ss_pred HHHH---h--cCCCeEEEECCCcHHHHh-c-C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-
Confidence 1222 2 234566667765443221 1 1 2221122224678888889998877542222233468899999886
Q ss_pred HHHHHHH
Q 005815 420 GADLANL 426 (676)
Q Consensus 420 gadL~~l 426 (676)
+--|..+
T Consensus 321 PLal~~~ 327 (591)
T 1z6t_A 321 PLVVSLI 327 (591)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 4444433
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.76 E-value=6.2e-05 Score=81.01 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH----Hhhh-----------hhHHHHHHHHH-Hhh
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM----FVGV-----------GASRVRDLFNK-AKA 304 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~----~~g~-----------~~~~vr~lF~~-A~~ 304 (676)
.....-++|+||||+|||+|+..+|..+ +.++++++...-.+. ..|. ....+...+.. .+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 3444559999999999999999998764 678888876532111 1111 11222233332 234
Q ss_pred CCCeEEEEcCCccccccCCC-CCCCC--ChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 305 NSPCLVFIDEIDAVGRQRGT-GIGGG--NDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 305 ~~P~ILfIDEID~l~~~r~~-~~~~~--~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
..+++|+||.+..+..+... +..+. .....+.+.+++..+..+....++.||.+..
T Consensus 151 ~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 67899999999999742211 00000 0022244566666665555556667766543
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.76 E-value=2.6e-05 Score=83.49 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=48.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH----HHhhhh-----------hHHHHHHH-HHHhhC
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE----MFVGVG-----------ASRVRDLF-NKAKAN 305 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~----~~~g~~-----------~~~vr~lF-~~A~~~ 305 (676)
....-++|+||||+|||+|+..++..+ +.++++++...-.. ...|.. ...+..+. ..++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 333459999999999999999998764 56777776543111 111211 11122222 233456
Q ss_pred CCeEEEEcCCccccc
Q 005815 306 SPCLVFIDEIDAVGR 320 (676)
Q Consensus 306 ~P~ILfIDEID~l~~ 320 (676)
.|++|+||++..+..
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 799999999999973
No 120
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.75 E-value=8.8e-05 Score=82.07 Aligned_cols=69 Identities=25% Similarity=0.376 Sum_probs=42.1
Q ss_pred ccccccCCCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc---CC-CEE
Q 005815 201 AKFEMEPNTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFF 276 (676)
Q Consensus 201 ~~~~~~~~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~-p~i 276 (676)
.+-|++++.+.+|+++ .+++++.+..+..++.... ..++|.||||||||+++.+++..+ +. .++
T Consensus 11 ~~~~~~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il 78 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDL--TEGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGII 78 (459)
T ss_dssp ----------CCSSCC--CHHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred cCCCccccCCCccccC--CHHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEE
Confidence 3457888999999997 4556666666666654421 269999999999999999998876 33 455
Q ss_pred EEech
Q 005815 277 SLSGS 281 (676)
Q Consensus 277 ~is~s 281 (676)
.+..+
T Consensus 79 ~~a~T 83 (459)
T 3upu_A 79 LAAPT 83 (459)
T ss_dssp EEESS
T ss_pred EecCc
Confidence 55433
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.75 E-value=4.7e-05 Score=81.61 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=65.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH----HHhhh------------hhHHHHHHHHHHhhCCCe
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE----MFVGV------------GASRVRDLFNKAKANSPC 308 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~----~~~g~------------~~~~vr~lF~~A~~~~P~ 308 (676)
.-++|+||||+|||+|+..++..+ +.++++++..+... .-.+. ....+..+-...+...|.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 348999999999999999998875 66778887654211 11111 111111112223347789
Q ss_pred EEEEcCCccccc-cCCCCCCCCC--hHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 309 LVFIDEIDAVGR-QRGTGIGGGN--DEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 309 ILfIDEID~l~~-~r~~~~~~~~--~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
+++||.+..+.+ ..-.+..+.. ....+.+.+++..+..+....++.||.+.
T Consensus 142 lvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 142 LIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp EEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred eEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999999999875 2111111111 12345566777666665555566666653
No 122
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.73 E-value=4.6e-05 Score=80.43 Aligned_cols=116 Identities=21% Similarity=0.217 Sum_probs=67.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhH--HH----H--Hhhhh---------------
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSEF--IE----M--FVGVG--------------- 291 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~~--~~----~--~~g~~--------------- 291 (676)
.....-++|+||||+|||+|+..+|..+ +.++++++...- .+ . ..+..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3334459999999999999999999875 557788876541 11 1 01110
Q ss_pred hH----HHHHHHHHHhh-CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 292 AS----RVRDLFNKAKA-NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 292 ~~----~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
.. .+..+....+. ..+.+|+||.+..+......+. +....+++.+.+++..+..+....++.||.+.+
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 11 12233334444 6789999999999974321110 111233445666666665554444566666543
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.68 E-value=5.6e-05 Score=74.50 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=21.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.-+.|.||+|+|||+|++.+++..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999854
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.64 E-value=7.7e-05 Score=94.72 Aligned_cols=123 Identities=17% Similarity=0.262 Sum_probs=80.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH----hhh--------hhHHHHHHHHHHhh---
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF----VGV--------GASRVRDLFNKAKA--- 304 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~----~g~--------~~~~vr~lF~~A~~--- 304 (676)
|......++|+|+||+|||+||..+|..+ +.++++++..+-.+.. .|. .+..+..+++.++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 35556679999999999999999999876 5579999886543332 221 11224445555443
Q ss_pred -CCCeEEEEcCCccccc-cCCCCC-CCCC-hHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 305 -NSPCLVFIDEIDAVGR-QRGTGI-GGGN-DEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 305 -~~P~ILfIDEID~l~~-~r~~~~-~~~~-~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
..|++||||.++.+.. ....+. +... .-..+.+++++..|..+....++.||++..-...+
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~ 872 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 872 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECT
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccc
Confidence 7899999999999975 221111 1111 12233478888888877777788888876644433
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.63 E-value=0.00092 Score=81.75 Aligned_cols=172 Identities=16% Similarity=0.122 Sum_probs=99.6
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEechh
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSLSGSE 282 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~-------~~p~i~is~s~ 282 (676)
+....+++|.++..++|.+.+..-. ..++-+.|+|+.|+|||+||+.+++.. ...++.++.+.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 3456678999988777776553211 123458899999999999999998762 12233444322
Q ss_pred -----HHHHH------hh----------hhhHHHHHHHHHHhhCC--CeEEEEcCCccccccCCCCCCCCChHHHHHHHH
Q 005815 283 -----FIEMF------VG----------VGASRVRDLFNKAKANS--PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQ 339 (676)
Q Consensus 283 -----~~~~~------~g----------~~~~~vr~lF~~A~~~~--P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~ 339 (676)
..... .+ .....+...+....... +.+|+||+++...
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------- 249 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------- 249 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------
Confidence 11100 00 01122333333333333 7899999997541
Q ss_pred HHHHhccCCCCCCeEEEEecCCcccccccccCCCccceEEecCC-CCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCC
Q 005815 340 LLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGL-PDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGF 418 (676)
Q Consensus 340 LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~-Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~ 418 (676)
.++.+. .+..||.||..+..... .. .....+.++. .+.++-.++|..+..............|++.+.|+
T Consensus 250 ---~~~~~~--~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 250 ---VLKAFD--NQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp ---HHTTTC--SSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred ---HHHhhc--CCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 122222 33467777776544321 11 1235667775 78888888988777543322233478899999987
Q ss_pred cH
Q 005815 419 SG 420 (676)
Q Consensus 419 sg 420 (676)
.-
T Consensus 321 PL 322 (1249)
T 3sfz_A 321 PL 322 (1249)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 126
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.61 E-value=0.00016 Score=68.44 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=34.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
+.-|+|+|+||+||||++++++..++.+++.++..++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 3569999999999999999999999999998887766543
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.60 E-value=0.00012 Score=78.54 Aligned_cols=117 Identities=17% Similarity=0.262 Sum_probs=64.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH----HHHHhhh-----------hhHHHHHHHHH-Hhh
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF----IEMFVGV-----------GASRVRDLFNK-AKA 304 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~----~~~~~g~-----------~~~~vr~lF~~-A~~ 304 (676)
.....-++|+||||+|||+||..+|..+ +.++++++...- .....|. ....+.+++.. .+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3444569999999999999999998764 678888877321 1111111 11223333332 235
Q ss_pred CCCeEEEEcCCccccccCC-CCCCCCC-h-HHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 305 NSPCLVFIDEIDAVGRQRG-TGIGGGN-D-EREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 305 ~~P~ILfIDEID~l~~~r~-~~~~~~~-~-~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
..+.+|+||.+..+..... .+..+.. . ...+.+.+++..+..+....++.||.+..
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 6789999999999864211 0000000 0 11123455555554433344566665543
No 128
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.59 E-value=0.00011 Score=78.54 Aligned_cols=114 Identities=21% Similarity=0.243 Sum_probs=62.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhHH--H---HH---hhh---------------hhHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSEFI--E---MF---VGV---------------GASRVR 296 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~~~--~---~~---~g~---------------~~~~vr 296 (676)
-+.|+||||+|||+|++.++... +-.+++++..+.. . .. .+. ......
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~ 212 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQM 212 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHH
Confidence 48999999999999999999876 2355777664310 0 00 000 001111
Q ss_pred HHHH----HHhh-----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc
Q 005815 297 DLFN----KAKA-----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363 (676)
Q Consensus 297 ~lF~----~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~ 363 (676)
.++. .... ..|.+|+|||+-++......+. +....+.+.+.+++..+..+....++.||.+++...
T Consensus 213 ~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 213 LLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST-TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 2222 2233 5799999999999874321110 111122234555555554443334556666655443
No 129
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.56 E-value=0.00013 Score=77.82 Aligned_cols=112 Identities=23% Similarity=0.228 Sum_probs=64.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhH------HHHH--hhhh---------------hHH--
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSEF------IEMF--VGVG---------------ASR-- 294 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~~------~~~~--~g~~---------------~~~-- 294 (676)
-++|+||||+|||+|+..+|..+ +.++++++...- .... .+.. ...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~ 203 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQM 203 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHH
Confidence 38999999999999999999863 456777776541 1110 1110 111
Q ss_pred --HHHHHHHHhh--CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 295 --VRDLFNKAKA--NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 295 --vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
+..+....+. ..+.+|+||.+..+......+. +....+.+.+.+++..+..+....++.||.+...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 1122233444 6789999999999974321100 1112233456666666655544455666665543
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.53 E-value=0.0001 Score=80.21 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=65.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhH------H--HHHhhhh--------------
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSLSGSEF------I--EMFVGVG-------------- 291 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---------~~p~i~is~s~~------~--~~~~g~~-------------- 291 (676)
|.....-++|+||||+|||+|++.++-.. +...++++..+. . ...++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 33334459999999999999999776332 234777766431 0 0001110
Q ss_pred -----hHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 292 -----ASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 292 -----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
...+..+........|.+|+||++-.+......+ .+...++++.+.+++..+..+....++.||.+++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222333445689999999998886432211 11223445555666666655544445667776664
No 131
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.43 E-value=5.4e-05 Score=72.21 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHHHHHhhCCCeEEEEcCCccccccCCCC---CCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 296 RDLFNKAKANSPCLVFIDEIDAVGRQRGTG---IGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 296 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~---~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+-.+..+....|.+|++||.-+-...+... ..-..........++...+..+... +..+|.+|+.++.+
T Consensus 91 rv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 91 LIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp HHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred HHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 344556666789999999976654322000 0001111122334455555444333 55677777876654
No 132
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.39 E-value=0.0014 Score=72.11 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=93.7
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCC--------CCCCeEEEEec----CC
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFT--------GNSGVIVIAAT----NR 361 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~--------~~~~ViVIaaT----N~ 361 (676)
..++.++.|..+ .|||+||||.++.+.+. .+++...+.+...||..+|+.. ..++|++||+. +.
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 344555555333 39999999999865331 2334445567788999888732 35678999887 23
Q ss_pred cccccccccCCCccceEEecCCCCHHHHHHHHH---H--------Hh--cCCCCC-ccccHHHHHH-------hCCCCcH
Q 005815 362 PEILDSALHRPGRFDRQVSVGLPDIRGREQILK---V--------HS--NNKKLD-KDVSLSVIAT-------RTPGFSG 420 (676)
Q Consensus 362 ~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~---~--------~l--~~~~l~-~d~dl~~La~-------~t~G~sg 420 (676)
|..+-|.|+. ||..+|.++.++.++..+|+. . .+ .+..+. .+..+..|++ .|.....
T Consensus 316 ~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~Ga 393 (444)
T 1g41_A 316 PSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGA 393 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGG
T ss_pred hhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCc
Confidence 4445577877 999999999999999999983 1 11 111111 2223555555 3455556
Q ss_pred HHHHHHHHHHHHHHHHc----C--CCCCCHHHHHHHH
Q 005815 421 ADLANLMNEAAILAGRR----G--KANITLKEIDDSI 451 (676)
Q Consensus 421 adL~~lv~~A~~~A~r~----~--~~~It~~di~~Ai 451 (676)
+.|++++..+...+..+ . .-.||.+++.+.+
T Consensus 394 R~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l 430 (444)
T 1g41_A 394 RRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADAL 430 (444)
T ss_dssp GHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhc
Confidence 66666655554443332 1 1236777776554
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.38 E-value=0.00056 Score=67.93 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=28.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS 281 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s 281 (676)
.....-++|+||||+|||+|+..++... +.++++++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3334458999999999999998887643 6677777654
No 134
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.34 E-value=0.00032 Score=73.72 Aligned_cols=113 Identities=17% Similarity=0.269 Sum_probs=63.5
Q ss_pred CCe-EEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhHHH----HHhhh-----------hhHHH-HHHHHH---
Q 005815 247 PKG-VLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSGSEFIE----MFVGV-----------GASRV-RDLFNK--- 301 (676)
Q Consensus 247 p~g-vLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~s~~~~----~~~g~-----------~~~~v-r~lF~~--- 301 (676)
|+| ++|+||||+|||+|+-.++..+ +..+++++..+-.. .-.|. ..+.+ -.+.+.
T Consensus 27 ~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~ 106 (333)
T 3io5_A 27 QSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDA 106 (333)
T ss_dssp CSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHH
Confidence 344 7899999999999988876554 56788887653211 11121 11112 222222
Q ss_pred HhhCCCeEEEEcCCccccccCC-CCCCCC----ChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 302 AKANSPCLVFIDEIDAVGRQRG-TGIGGG----NDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 302 A~~~~P~ILfIDEID~l~~~r~-~~~~~~----~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
.+...|.+|+||-|.++.++.. .+..+. +-...+.+.+.|..+..+....++.||.+-
T Consensus 107 i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp CCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 2556899999999999975321 111000 012344566666665555555666666653
No 135
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.34 E-value=0.00018 Score=75.61 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---------------C----CCEEEEechhH--HH----H--Hhhhh--------
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---------------G----VPFFSLSGSEF--IE----M--FVGVG-------- 291 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---------------~----~p~i~is~s~~--~~----~--~~g~~-------- 291 (676)
..-++|+||||+|||+|+..+|..+ | .++++++...- .+ . -.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNT 177 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCE
Confidence 3348999999999999999998753 2 56777776542 11 1 01110
Q ss_pred -------hH----HHHHHHHHHhh-CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEec
Q 005815 292 -------AS----RVRDLFNKAKA-NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAAT 359 (676)
Q Consensus 292 -------~~----~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaT 359 (676)
.. .+..+....+. ..+.+|+||.+..+......+ .+....+++.+.+++..+..+....++.||.+.
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~n 256 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG-RGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 256 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC-TTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 01 11123333444 678999999999997432111 011123344566666666655555566666653
Q ss_pred C
Q 005815 360 N 360 (676)
Q Consensus 360 N 360 (676)
.
T Consensus 257 q 257 (322)
T 2i1q_A 257 Q 257 (322)
T ss_dssp C
T ss_pred c
Confidence 3
No 136
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.33 E-value=0.00014 Score=91.29 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=54.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH----HHhhh--------hhHHHHHHHHHHh----
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE----MFVGV--------GASRVRDLFNKAK---- 303 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~----~~~g~--------~~~~vr~lF~~A~---- 303 (676)
|......++|+||||+|||+|+..+|..+ +.++++++..+-.+ ...|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35555679999999999999999998875 56788887654332 21221 1112334444443
Q ss_pred hCCCeEEEEcCCccccc
Q 005815 304 ANSPCLVFIDEIDAVGR 320 (676)
Q Consensus 304 ~~~P~ILfIDEID~l~~ 320 (676)
...|++|+||.+..+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999973
No 137
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.31 E-value=0.0031 Score=71.18 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=92.5
Q ss_pred ccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHH----hcCC-----CEEEEech---hH-
Q 005815 217 AGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAG----EAGV-----PFFSLSGS---EF- 283 (676)
Q Consensus 217 ~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~----e~~~-----p~i~is~s---~~- 283 (676)
+|.+..++++.+.+..- +....+.|.|+|+.|+|||+||+.+++ .... -++.++.. +.
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49988877776655321 112245689999999999999999996 2322 12333331 11
Q ss_pred --HHHH---hhhh-------------hHHHHHHHHHHhhCC-CeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHh
Q 005815 284 --IEMF---VGVG-------------ASRVRDLFNKAKANS-PCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 344 (676)
Q Consensus 284 --~~~~---~g~~-------------~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~l 344 (676)
.... .+.. ...+...+....... +++|+||+++... +. .+. ..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------------~~--~~~-~~ 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------------TI--RWA-QE 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------------HH--HHH-HH
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------------hh--ccc-cc
Confidence 1111 1110 111233444444454 8999999997751 11 111 11
Q ss_pred ccCCCCCCeEEEEecCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCcc--ccHHHHHHhCCCCc
Q 005815 345 DGFTGNSGVIVIAATNRPEILDSALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKD--VSLSVIATRTPGFS 419 (676)
Q Consensus 345 d~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d--~dl~~La~~t~G~s 419 (676)
.+..||.||....... .. +..+..+.++..+.++-.++|..+.......++ .....|++.+.|..
T Consensus 264 ------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 3345667776543321 11 113457889989999999999888543322111 12466777777753
No 138
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.31 E-value=0.00038 Score=71.51 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.-++|+||||+|||+|++.++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 349999999999999999998743
No 139
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.29 E-value=0.004 Score=62.35 Aligned_cols=161 Identities=23% Similarity=0.287 Sum_probs=84.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech--------hHHHHHhh----------h--hhHHHHHHHHHHhhC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS--------EFIEMFVG----------V--GASRVRDLFNKAKAN 305 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s--------~~~~~~~g----------~--~~~~vr~lF~~A~~~ 305 (676)
.+++.|+||+|||+++-.+|..+ |..++.++.. .+...... . .+..+..++ ..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----KA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----HH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----hc
Confidence 49999999999999999998765 6666655542 11111000 0 111223322 23
Q ss_pred CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC--ccc----------------ccc
Q 005815 306 SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR--PEI----------------LDS 367 (676)
Q Consensus 306 ~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~--~~~----------------Ld~ 367 (676)
.|.+++|||+-..... .......-+-+..++. .++=|++|+|. .+. ++.
T Consensus 84 ~pdlvIVDElG~~~~~-----~~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAP-----GSRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCT-----TCSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCcc-----cchhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 6899999998654211 1112223333333222 34557777772 222 333
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 005815 368 ALHRPGRFDRQVSVGLPDIRGREQILKVHSNNKKLDKDVSLSVIATRTPGFSGADLANLMNEAAILAG 435 (676)
Q Consensus 368 aLlrpGRfd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~La~~t~G~sgadL~~lv~~A~~~A~ 435 (676)
.++. +.|.+..++.|..+ +++.+...+-..++..-..+... |+...|..|-.-|...++
T Consensus 151 ~~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTAA 209 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHHH
Confidence 4444 56667777777654 33333333332222222233332 677777666555665554
No 140
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.28 E-value=0.00055 Score=70.99 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 220 DEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 220 ~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
++..+.+.+++..+... ......|.-++|.||||+||||+++.++.+++..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45555566655553322 1223345669999999999999999999988556677777555
No 141
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.24 E-value=0.00015 Score=70.33 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSL 278 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~---~~p~i~i 278 (676)
-++++||+|+|||+++..++..+ +.+++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999997666543 5555444
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.24 E-value=0.00022 Score=71.50 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=43.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH---H---Hhhhh-----hHHHHHHHHHHhh----CCCeEEE
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE---M---FVGVG-----ASRVRDLFNKAKA----NSPCLVF 311 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~---~---~~g~~-----~~~vr~lF~~A~~----~~P~ILf 311 (676)
++++||+|+|||+++..++..+ +..++.+....-.. . ..|.. .....++++.++. ..+.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 7789999999999999888766 56666664322000 0 01110 0112345655554 3578999
Q ss_pred EcCCccc
Q 005815 312 IDEIDAV 318 (676)
Q Consensus 312 IDEID~l 318 (676)
|||+..+
T Consensus 95 IDEaQ~l 101 (223)
T 2b8t_A 95 IDEVQFF 101 (223)
T ss_dssp ECSGGGS
T ss_pred EecCccC
Confidence 9999886
No 143
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.21 E-value=0.00055 Score=68.06 Aligned_cols=38 Identities=32% Similarity=0.273 Sum_probs=28.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHh----cCCCEEEEech
Q 005815 244 AKIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSLSGS 281 (676)
Q Consensus 244 ~~~p~gvLL~GPpGTGKT~LArAlA~e----~~~p~i~is~s 281 (676)
.....-++|+|+||+|||+|+..+|.. .+.++++++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 333345999999999999999887643 36788877653
No 144
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.00067 Score=65.90 Aligned_cols=32 Identities=44% Similarity=0.622 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
.+.++|.||||+||||+++++|+.++.+++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34699999999999999999999999988754
No 145
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.16 E-value=0.00025 Score=72.70 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=42.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC----CCEEEEechhH----------H-HHHhhhhhHHHHHHHHHHhhCCCeEEEEc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSLSGSEF----------I-EMFVGVGASRVRDLFNKAKANSPCLVFID 313 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~----~p~i~is~s~~----------~-~~~~g~~~~~vr~lF~~A~~~~P~ILfID 313 (676)
-++|.||+|+||||+++++++... ..++ +..... . ...++.....++..+..+....|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 388999999999999999998652 2222 211110 0 00011112335667777777789999999
Q ss_pred CCc
Q 005815 314 EID 316 (676)
Q Consensus 314 EID 316 (676)
|+-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 146
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.16 E-value=0.00021 Score=68.25 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
++.|+|+||||+|||++++.+|..++.+++.. .++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHH
Confidence 45799999999999999999999999988754 444443
No 147
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.15 E-value=0.00086 Score=67.94 Aligned_cols=39 Identities=31% Similarity=0.459 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
..|..++|.||||+||||+++.++..++.+++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 445669999999999999999999999877777777765
No 148
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.12 E-value=0.00063 Score=68.59 Aligned_cols=29 Identities=41% Similarity=0.618 Sum_probs=23.7
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+++| +.|.||+|+|||||++.+++..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444444 8899999999999999999864
No 149
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.11 E-value=0.00055 Score=70.76 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEec
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSG 280 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~ 280 (676)
..-++|.||||+|||+|++.+|... |.++++++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3348999999999999999998865 446666653
No 150
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.11 E-value=0.00054 Score=73.38 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=57.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhc----CCCEEEEec-hhHH---------HHHhhhhhHHHHHHHHHHhhCCCeEEEEcCC
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSG-SEFI---------EMFVGVGASRVRDLFNKAKANSPCLVFIDEI 315 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~----~~p~i~is~-s~~~---------~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEI 315 (676)
+++.||+|+||||+++++++.. +..++.+.- .++. ...++.....+.+.+..|....|.+|++||+
T Consensus 126 i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp 205 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEM 205 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCC
Confidence 8999999999999999998865 222322211 1110 0001111223456788888899999999998
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 316 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 316 D~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
-. ..+...++... ..+..|+.+++..+.+
T Consensus 206 ~d----------------~e~~~~~~~~~-----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 206 RD----------------LETIRLALTAA-----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CS----------------HHHHHHHHHHH-----HTTCEEEEEESCSSHH
T ss_pred CC----------------HHHHHHHHHHH-----hcCCEEEEEEccChHH
Confidence 31 12333333332 1345688888876654
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.10 E-value=0.00088 Score=73.97 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEec
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSG 280 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~ 280 (676)
|.....-++|.|+||+|||+|+..+|..+ |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 33333449999999999999999998754 568888775
No 152
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.06 E-value=0.00035 Score=75.03 Aligned_cols=57 Identities=16% Similarity=0.331 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 295 VRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 295 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
.|-.+..|....|.+|++||.-+-. +......+..++..+. ...++.||.+|+..+.
T Consensus 170 QRVaIArAL~~~P~lLLlDEPTs~L----------D~~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQATSAL----------DPATTRSILELLKDIN---RRLGLTILLITHEMDV 226 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTS----------CHHHHHHHHHHHHHHH---HHSCCEEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCccC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHH
Confidence 3445555667889999999975543 4445555556666552 2235678888887654
No 153
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.05 E-value=0.00022 Score=74.83 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=24.7
Q ss_pred hhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 241 AVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 241 ~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+...++.| +.|.||+|+|||||++.+++..
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 334445554 8999999999999999999855
No 154
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.03 E-value=0.00048 Score=71.16 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 296 RDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 296 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
|-.+..|....|.+|++||.-+-. +......+.+++..+. ...+..||.+|++.+.+
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~L----------D~~~~~~i~~~l~~l~---~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGL----------DPMGVSEIMKLLVEMQ---KELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTC----------CHHHHHHHHHHHHHHH---HHHCCEEEEEESCCSSG
T ss_pred HHHHHHHHHcCCCEEEEECccccC----------CHHHHHHHHHHHHHHH---hhCCCEEEEEecCHHHH
Confidence 444555667889999999975542 4445555666666552 11145677788876553
No 155
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.03 E-value=0.00044 Score=66.18 Aligned_cols=32 Identities=38% Similarity=0.653 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 277 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~ 277 (676)
.|.-|+|.|+||+||||+++.++..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 45569999999999999999999999988765
No 156
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.02 E-value=0.00034 Score=70.48 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=34.9
Q ss_pred HHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc
Q 005815 296 RDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE 363 (676)
Q Consensus 296 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~ 363 (676)
|-.+..|....|.+|++||.-+-. +......+..++..+. ...+..||.+|++.+
T Consensus 153 Rv~iAral~~~p~llllDEPts~L----------D~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWAL----------DSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTS----------CHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 444555666889999999975543 4445555555665552 122456788888765
No 157
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.02 E-value=0.001 Score=68.39 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=35.6
Q ss_pred HHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 296 RDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 296 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
|-.+..|....|.+|++||.-+-. +......+.+++..+ ....+..||.+|+..+.
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~L----------D~~~~~~i~~~l~~~---~~~~g~tviivtHd~~~ 219 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSAL----------DAGNQLRVQRLLYES---PEWASRTVLLITQQLSL 219 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTC----------CHHHHHHHHHHHHHC---TTTTTSEEEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCC----------CHHHHHHHHHHHHHH---HhhcCCEEEEEeCCHHH
Confidence 444555667889999999975543 445555566666654 22234567777887554
No 158
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.98 E-value=0.00095 Score=68.53 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=36.5
Q ss_pred HHHHHHHHhhC------CCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 295 VRDLFNKAKAN------SPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 295 vr~lF~~A~~~------~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
.|-.+..|... .|.+|++||.-+-. +......+.+++..+. ...+..||.+|++.+.
T Consensus 148 QRv~iAraL~~~~~~~~~p~lLllDEPts~L----------D~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 148 QRVQLARVLAQLWQPQPTPRWLFLDEPTSAL----------DLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLNL 210 (266)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEECCCCSSC----------CHHHHHHHHHHHHHHH---HHSSEEEEEECSCHHH
T ss_pred HHHHHHHHHhcccccCCCCCEEEEeCccccC----------CHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHHH
Confidence 34455566666 89999999975432 4445555566666552 2345678888887654
No 159
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.98 E-value=0.00054 Score=65.57 Aligned_cols=37 Identities=35% Similarity=0.613 Sum_probs=31.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
.-+.|.||||+||||+++.+++..+.+.+.++..++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 4589999999999999999999888888888876653
No 160
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.94 E-value=0.00071 Score=69.08 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=23.7
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+++| +.|.||+|+|||||++.+++..
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444454 8899999999999999999854
No 161
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.94 E-value=0.00087 Score=68.00 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=34.8
Q ss_pred HHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 296 RDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 296 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
|-.+..|....|.+|++||.-+-. +......+.+++..+. . +..||.+|+..+.
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~L----------D~~~~~~i~~~l~~~~---~--g~tviivtH~~~~ 206 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSAL----------DYESEHVIMRNMHKIC---K--GRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCC----------CHHHHHHHHHHHHHHH---T--TSEEEEECSSGGG
T ss_pred HHHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHc---C--CCEEEEEeCCHHH
Confidence 334455566789999999975543 4555666666666662 1 3467777777654
No 162
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.93 E-value=0.00049 Score=64.43 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998887654
No 163
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.93 E-value=0.00098 Score=68.34 Aligned_cols=30 Identities=27% Similarity=0.636 Sum_probs=24.2
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+++| +.|.||+|+|||||++.+++..
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34444554 8899999999999999999865
No 164
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.91 E-value=0.0017 Score=71.37 Aligned_cols=39 Identities=28% Similarity=0.181 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGS 281 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s 281 (676)
|.....-++|.|+||+|||+|+..+|... +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34444458999999999999999998653 6688888763
No 165
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.91 E-value=0.00084 Score=68.40 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 296 RDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 296 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
|-.+..|....|.+|++||.-+-. +......+.+++..+. ...+..||.+|+..+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSAL----------DLANQDIVLSLLIDLA---QSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTS----------CHHHHHHHHHHHHHHH---HTSCCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHH
Confidence 344555666889999999975543 4455555666666552 2224567777887654
No 166
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.90 E-value=0.0013 Score=70.72 Aligned_cols=69 Identities=20% Similarity=0.416 Sum_probs=43.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC----CCEEEEech-hH--------H-HHHhhhhhHHHHHHHHHHhhCCCeEEEEc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSLSGS-EF--------I-EMFVGVGASRVRDLFNKAKANSPCLVFID 313 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~----~p~i~is~s-~~--------~-~~~~g~~~~~vr~lF~~A~~~~P~ILfID 313 (676)
..++|.||+|+||||+++++++... ..++.+... ++ + ...+|.....++..+..+....|.+|++|
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illd 216 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 216 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEEC
Confidence 3489999999999999999998652 223222210 00 0 00011112234566777777899999999
Q ss_pred CCc
Q 005815 314 EID 316 (676)
Q Consensus 314 EID 316 (676)
|+-
T Consensus 217 E~~ 219 (372)
T 2ewv_A 217 EMR 219 (372)
T ss_dssp CCC
T ss_pred CCC
Confidence 983
No 167
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.88 E-value=0.0005 Score=65.60 Aligned_cols=35 Identities=34% Similarity=0.593 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
-|+|+|+||+|||++++.++..+|.+++. ..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~ 38 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIE 38 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHH
Confidence 49999999999999999999999998764 444443
No 168
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.87 E-value=0.0021 Score=65.68 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+++| +.|.||+|+|||||++.+++..
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34444444 8899999999999999999864
No 169
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.86 E-value=0.00055 Score=65.15 Aligned_cols=32 Identities=38% Similarity=0.757 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
++.|+|+|+||+|||++++.++..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999998877643
No 170
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.86 E-value=0.0012 Score=65.80 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=23.3
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+.| +.|.||+|+|||||++.+++..
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444 8899999999999999999854
No 171
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.85 E-value=0.004 Score=65.32 Aligned_cols=38 Identities=29% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
|.....-++|.|+||+|||+|+..+|..+ +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 33334459999999999999999998654 567777765
No 172
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.85 E-value=0.00072 Score=63.60 Aligned_cols=35 Identities=29% Similarity=0.685 Sum_probs=28.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
..+.|+||||+||||+++.+|+.++.+++ +..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~ 39 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEI 39 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHH
Confidence 45999999999999999999999887654 444443
No 173
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.84 E-value=0.0018 Score=65.83 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=32.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSLSGSEFIE 285 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e---~~~p~i~is~s~~~~ 285 (676)
.-|+|+|+||+|||++++.++.. .|.+++.++...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 45899999999999999999997 788888777766553
No 174
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.84 E-value=0.00063 Score=64.48 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
.++|.||||+|||++++++|..++.+++. ..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHH
Confidence 48999999999999999999999987764 44444
No 175
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.81 E-value=0.00038 Score=70.30 Aligned_cols=29 Identities=48% Similarity=0.756 Sum_probs=23.5
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+++| +.|.||+|+|||||++.+++..
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444 8899999999999999999854
No 176
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.77 E-value=0.00064 Score=65.24 Aligned_cols=30 Identities=43% Similarity=0.737 Sum_probs=26.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh-cCCCEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE-AGVPFFS 277 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e-~~~p~i~ 277 (676)
..|+|+|+||+|||++++.++.. .|.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 45999999999999999999998 6766654
No 177
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.77 E-value=0.0028 Score=63.10 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
-+.|.||+|+|||||++++++...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 388999999999999999998753
No 178
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.76 E-value=0.00054 Score=73.96 Aligned_cols=29 Identities=45% Similarity=0.767 Sum_probs=23.8
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...++.| +.|.||+|+|||||.|.+|+..
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3444554 8899999999999999999854
No 179
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.75 E-value=0.00051 Score=72.76 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=48.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechh-H-----HHH--HhhhhhHHHHHHHHHHhhCCCeEEEEcCCcc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSE-F-----IEM--FVGVGASRVRDLFNKAKANSPCLVFIDEIDA 317 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s~-~-----~~~--~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 317 (676)
..++|.||+|+|||||++++++... .-.+.+.... + .+. ++..+..+.+..+..|....|.+|++||+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 3599999999999999999999763 2234443321 1 000 1100345677888888889999999999754
No 180
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.74 E-value=0.00081 Score=68.30 Aligned_cols=33 Identities=39% Similarity=0.499 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS 281 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s 281 (676)
-++|.||||+|||++|+++|.+.+.+++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999988877653
No 181
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.74 E-value=0.0013 Score=63.85 Aligned_cols=33 Identities=42% Similarity=0.647 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
.|.-|+|.|+||+||||+++.++..++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 344599999999999999999999999886544
No 182
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.73 E-value=0.01 Score=67.04 Aligned_cols=74 Identities=16% Similarity=0.317 Sum_probs=54.2
Q ss_pred eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc--cccccccCCCccceEEecCCCC
Q 005815 308 CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE--ILDSALHRPGRFDRQVSVGLPD 385 (676)
Q Consensus 308 ~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~--~Ld~aLlrpGRfd~~I~v~~Pd 385 (676)
-+|+|||++.+.... ..+....+.++... -..-+|.+|.+|.+|. .++..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999886421 23344555555554 2456899999999987 68777766 678888999999
Q ss_pred HHHHHHHHH
Q 005815 386 IRGREQILK 394 (676)
Q Consensus 386 ~~~R~~IL~ 394 (676)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877763
No 183
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.73 E-value=0.0015 Score=74.41 Aligned_cols=96 Identities=27% Similarity=0.385 Sum_probs=55.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH----HhhhhhHHHHHHHHHH---------hhCCCeEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM----FVGVGASRVRDLFNKA---------KANSPCLVF 311 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~----~~g~~~~~vr~lF~~A---------~~~~P~ILf 311 (676)
+.++|+||||||||+++++++..+ +.+++.+..+.-... ..+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999998754 667766644332211 1112222233333110 011347999
Q ss_pred EcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 312 IDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 312 IDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
|||+..+. ...+..|+..+ .....+++++-.+
T Consensus 285 IDEasml~--------------~~~~~~Ll~~~---~~~~~lilvGD~~ 316 (574)
T 3e1s_A 285 VDEVSMMG--------------DALMLSLLAAV---PPGARVLLVGDTD 316 (574)
T ss_dssp ECCGGGCC--------------HHHHHHHHTTS---CTTCEEEEEECTT
T ss_pred EcCccCCC--------------HHHHHHHHHhC---cCCCEEEEEeccc
Confidence 99997772 22445555544 2344566666444
No 184
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.73 E-value=0.0011 Score=62.32 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=28.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
..|+|.|+||+|||++++.+|..+|.|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999999998754
No 185
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.72 E-value=0.00097 Score=71.54 Aligned_cols=29 Identities=45% Similarity=0.704 Sum_probs=23.6
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...++.| +.|.||+|+|||||.|.+|+..
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3444444 7899999999999999999854
No 186
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.72 E-value=0.004 Score=70.85 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=26.2
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.|.||+|+|||||++.+++..
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445555555 8899999999999999999854
No 187
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.72 E-value=0.00088 Score=72.13 Aligned_cols=30 Identities=40% Similarity=0.694 Sum_probs=24.0
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....++.| +.|.||+|+|||||.|.+|+..
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34444444 8899999999999999999854
No 188
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.70 E-value=0.0011 Score=71.03 Aligned_cols=30 Identities=30% Similarity=0.650 Sum_probs=24.2
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....++.| +.|.||+|+|||||.|++|+..
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34445555 8899999999999999999854
No 189
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.69 E-value=0.00069 Score=63.08 Aligned_cols=29 Identities=34% Similarity=0.634 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
-|+|+||||+||||+++.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8888876654
No 190
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.68 E-value=0.001 Score=71.21 Aligned_cols=30 Identities=40% Similarity=0.596 Sum_probs=23.9
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....++.| +.|.||+|+|||||.|.+|+..
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34444444 8899999999999999999854
No 191
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.68 E-value=0.0069 Score=60.70 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=30.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEech-hHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS-EFIE 285 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s-~~~~ 285 (676)
.++++||+|+|||.++.+++...+.+++.+... ++..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 499999999999999999999887777777544 4443
No 192
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.68 E-value=0.0011 Score=63.12 Aligned_cols=38 Identities=26% Similarity=0.500 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
.+.-|+|.|+||+|||++++.++..++.+++ +..++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 42 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLLR 42 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHHH
Confidence 3556999999999999999999999887655 4444443
No 193
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.00083 Score=63.28 Aligned_cols=35 Identities=29% Similarity=0.696 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH-hcCCCEEEEechhH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAG-EAGVPFFSLSGSEF 283 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~-e~~~p~i~is~s~~ 283 (676)
|.-|+|.|+||+||||+++.++. ..+ +..++...+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHH
Confidence 44689999999999999999998 454 445554333
No 194
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.66 E-value=0.0011 Score=63.31 Aligned_cols=37 Identities=32% Similarity=0.541 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
|.-|+|.|+||+||||+++.++..++.++ ++..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~--i~~d~~~~ 39 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELLR 39 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHHHH
Confidence 34589999999999999999999998765 45555543
No 195
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.65 E-value=0.0057 Score=68.68 Aligned_cols=104 Identities=18% Similarity=0.175 Sum_probs=61.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh----HHHHH--hh----------------------hhhHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSE----FIEMF--VG----------------------VGASRVRD 297 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~----~~~~~--~g----------------------~~~~~vr~ 297 (676)
-++|.||||+|||+|++.++... |.+++++...+ +.... .+ .+....+.
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~ 362 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQI 362 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHHH
Confidence 48999999999999999998764 45566654322 11110 00 12345666
Q ss_pred HHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCc
Q 005815 298 LFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRP 362 (676)
Q Consensus 298 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~ 362 (676)
++..+....|.+|+||=+..+-.. . ........+..++..+. . .++.+|.+++..
T Consensus 363 ~~a~~l~~~p~llilDp~~~Ld~~-~-----~~~~~~~~i~~ll~~l~---~-~g~tvilvsh~~ 417 (525)
T 1tf7_A 363 IKSEINDFKPARIAIDSLSALARG-V-----SNNAFRQFVIGVTGYAK---Q-EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHTTCCSEEEEECHHHHTSS-S-----CHHHHHHHHHHHHHHHH---H-TTCEEEEEEECS
T ss_pred HHHHHHhhCCCEEEEcChHHHHhh-C-----ChHHHHHHHHHHHHHHH---h-CCCEEEEEECcc
Confidence 777788889999999954444211 0 01223445555665553 2 245555555544
No 196
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.65 E-value=0.0026 Score=64.78 Aligned_cols=31 Identities=39% Similarity=0.722 Sum_probs=24.9
Q ss_pred hhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 241 AVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 241 ~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.....+++| +.|.||+|+|||||++.+++..
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345555555 8899999999999999999854
No 197
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.65 E-value=0.0013 Score=63.75 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 277 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~ 277 (676)
+.-|+|.|+||+||||+++.+++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4569999999999999999999999877665
No 198
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.64 E-value=0.002 Score=62.59 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|.||+|+|||||++.+++..
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999875
No 199
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.64 E-value=0.0013 Score=75.19 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
+.|-.+.+|....|.|+++||.-+-. +...++.+.+.+..+. .+..+|..|++.+.
T Consensus 485 rQrv~lARal~~~p~illlDEpts~L----------D~~~~~~i~~~l~~~~-----~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSV----------DPITEKRILDGLKRYT-----KGCTTFIITQKIPT 540 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTS----------CHHHHHHHHHHHHHHS-----TTCEEEEEESCHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccC----------CHHHHHHHHHHHHHhC-----CCCEEEEEecChHH
Confidence 44556666777899999999975543 4455555666666552 23467777787654
No 200
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.62 E-value=0.0022 Score=73.39 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 293 SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 293 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
++.|-.+.+|....|.||++||.-+-. +...+..+.+.+..+. .+..+|..|++.+.+
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts~L----------D~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATSNV----------DTKTEKSIQAAMWKLM-----EGKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCTTC----------CHHHHHHHHHHHHHHH-----TTSEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCC----------CHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 344556667777899999999975543 4455555566665552 134677788887654
No 201
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.61 E-value=0.0055 Score=64.18 Aligned_cols=72 Identities=26% Similarity=0.287 Sum_probs=45.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH-------HHh---h----------hhhHHHHHHHHH
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE-------MFV---G----------VGASRVRDLFNK 301 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~-------~~~---g----------~~~~~vr~lF~~ 301 (676)
..++-++|.||+|+||||++..+|..+ +..+..+++..+.. .+. + .......+.+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 344568999999999999999999865 55555555432211 110 0 011112345556
Q ss_pred HhhCCCeEEEEcCCc
Q 005815 302 AKANSPCLVFIDEID 316 (676)
Q Consensus 302 A~~~~P~ILfIDEID 316 (676)
+....|.+|+||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 667788999999874
No 202
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.60 E-value=0.0019 Score=73.58 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=25.4
Q ss_pred hhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 240 AAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 240 ~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++.....++| +.|.||+|+|||||++.+++..
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3444455555 8899999999999999999865
No 203
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.60 E-value=0.0012 Score=61.91 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=26.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 277 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~ 277 (676)
+-|+|.|+||+|||++++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987664
No 204
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.58 E-value=0.0011 Score=62.89 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 276 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i 276 (676)
+.-|+|.|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 345999999999999999999999999887
No 205
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.57 E-value=0.00073 Score=68.30 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...++.| +.|.||+|+|||||++.+++..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4444554 8899999999999999999854
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.57 E-value=0.0019 Score=61.27 Aligned_cols=36 Identities=33% Similarity=0.596 Sum_probs=31.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF 283 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~ 283 (676)
.-+.|.|++|+||||+++.++..+ |.|++.+++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 348899999999999999999987 999998875443
No 207
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.56 E-value=0.0019 Score=66.11 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+...+++| +.|.||+|+|||||++++++..
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444554 8899999999999999999865
No 208
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.54 E-value=0.0026 Score=61.82 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998764
No 209
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.54 E-value=0.0016 Score=62.36 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+.-|+|.|+||+||||+++.++..++.+++. ..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~--~d~~~~ 45 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS--TGDLLR 45 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc--HHHHHH
Confidence 3469999999999999999999999887654 444443
No 210
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.54 E-value=0.0012 Score=70.43 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=23.6
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...++.| +.|.||+|+|||||.|.+|+..
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3444444 8899999999999999999854
No 211
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.53 E-value=0.0015 Score=65.31 Aligned_cols=28 Identities=43% Similarity=0.640 Sum_probs=23.1
Q ss_pred CCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 244 AKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 244 ~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
..+++| +.|.||+|+|||||++.+++..
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444 8899999999999999999865
No 212
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.52 E-value=0.0017 Score=64.00 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+.-|+|.|+||+||||+++.+|..++.+++ +..++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~~~~ 40 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHL--ATGDMLR 40 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEE--ehhHHHH
Confidence 446999999999999999999999987655 4444443
No 213
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.52 E-value=0.0016 Score=63.83 Aligned_cols=29 Identities=34% Similarity=0.651 Sum_probs=25.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
|+|.||||+||||+++.++.+++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999988776544
No 214
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.52 E-value=0.0013 Score=62.51 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
-|+|.|+||+||||+++.++..++.+++ +..++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 4899999999999999999999887654 444443
No 215
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.49 E-value=0.0017 Score=63.53 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
|+|.||||+||||+++.++.+++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998876644
No 216
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.48 E-value=0.0022 Score=68.55 Aligned_cols=22 Identities=50% Similarity=0.785 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|.||+|+|||||.|.+|+..
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999999854
No 217
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.48 E-value=0.0018 Score=60.47 Aligned_cols=29 Identities=21% Similarity=0.528 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 277 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~ 277 (676)
.|+|.|+||+|||++++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 38899999999999999999999988764
No 218
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.47 E-value=0.0017 Score=62.30 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+.-|+|.|+||+||||+++.++..++.+++ +..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~~ 48 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELLR 48 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 456999999999999999999999986554 4445443
No 219
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.46 E-value=0.0017 Score=64.32 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+.-|+|.|+||+||||+++.++..++.+++ +..++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~~~~ 43 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHL--SSGDLLR 43 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEE--echHHHH
Confidence 456999999999999999999999887655 4444443
No 220
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.46 E-value=0.0013 Score=66.81 Aligned_cols=29 Identities=38% Similarity=0.692 Sum_probs=23.4
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+++| +.|.||+|+|||||++.+++..
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3344444 8899999999999999999864
No 221
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.45 E-value=0.0095 Score=66.86 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=62.5
Q ss_pred CeEEEEcCCCChHHHHHHH--HHHhc--CCCEEEEechhHHHH------Hhhh---------------------------
Q 005815 248 KGVLLVGPPGTGKTLLAKA--IAGEA--GVPFFSLSGSEFIEM------FVGV--------------------------- 290 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArA--lA~e~--~~p~i~is~s~~~~~------~~g~--------------------------- 290 (676)
.-++|.||+|+|||+|++. +++.. +...+++++.+.... .+|.
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~ 119 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVG 119 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhc
Confidence 3499999999999999999 44543 445666655331100 0000
Q ss_pred ---hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 291 ---GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 291 ---~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
................|.+|+|||+-++... .+.+......+..++..+.. .++.||.+|++.+.+
T Consensus 120 ~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 120 GFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIEEY 188 (525)
T ss_dssp SHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSSS
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCCc
Confidence 0011222333334467889999999876432 11123344556666666632 245677777776654
No 222
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.45 E-value=0.002 Score=62.57 Aligned_cols=35 Identities=34% Similarity=0.689 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
+.-+.|.||||+||||+++.+++.+|..+ +++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 34599999999999999999999987644 455443
No 223
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.44 E-value=0.0015 Score=62.02 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
.-|+|.||||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 224
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.44 E-value=0.0017 Score=63.92 Aligned_cols=36 Identities=28% Similarity=0.593 Sum_probs=29.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
..|+|.|+||+||||+++.+|..++.+++. ..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 41 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS--TGDMLR 41 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe--hhHHHH
Confidence 358999999999999999999999877654 444443
No 225
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.44 E-value=0.009 Score=66.85 Aligned_cols=76 Identities=17% Similarity=0.364 Sum_probs=51.4
Q ss_pred CCe-EEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcc--cccccccCCCccceEEecC
Q 005815 306 SPC-LVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPE--ILDSALHRPGRFDRQVSVG 382 (676)
Q Consensus 306 ~P~-ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~--~Ld~aLlrpGRfd~~I~v~ 382 (676)
-|. +|+|||...+.... ..+....+..|... ....++.+|.+|.+|+ .++..+.. -|...|.+.
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 354 89999998875311 12233344444333 2334788999999987 57776666 778888999
Q ss_pred CCCHHHHHHHHH
Q 005815 383 LPDIRGREQILK 394 (676)
Q Consensus 383 ~Pd~~~R~~IL~ 394 (676)
..+..+.+.|+.
T Consensus 363 v~s~~dsr~ilg 374 (512)
T 2ius_A 363 VSSKIDSRTILD 374 (512)
T ss_dssp CSSHHHHHHHHS
T ss_pred cCCHHHHHHhcC
Confidence 999888888774
No 226
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.42 E-value=0.0018 Score=65.48 Aligned_cols=24 Identities=38% Similarity=0.693 Sum_probs=21.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.-+.|.||+|+|||||++.+++..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999854
No 227
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.40 E-value=0.0018 Score=61.06 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
-++|.||||+|||++++.+++.+|.+++ ++.++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 4899999999999999999998876554 44443
No 228
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.40 E-value=0.004 Score=67.40 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=23.5
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHh
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e 270 (676)
+...++.| +.|.||+|+|||||++.+++.
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34444444 899999999999999999984
No 229
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.40 E-value=0.0029 Score=68.13 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|.||+|+|||||.|.+|+..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 8899999999999999999854
No 230
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.40 E-value=0.0026 Score=60.39 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSLSGSEFI 284 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~---~p~i~is~s~~~ 284 (676)
-|+|.|+||+||||+++.++..++ .++..++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 489999999999999999999875 446666655543
No 231
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.39 E-value=0.0015 Score=63.19 Aligned_cols=37 Identities=16% Similarity=0.402 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+.-|+|.|+||+|||++++.++..++.+++. ..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~--~d~~~~ 51 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS--AGDLLR 51 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE--HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe--HHHHHH
Confidence 3458999999999999999999998876554 444443
No 232
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.39 E-value=0.0025 Score=64.69 Aligned_cols=28 Identities=46% Similarity=0.860 Sum_probs=22.8
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHh
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e 270 (676)
...+++| +.|.||+|+|||||++.+++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344444 889999999999999999995
No 233
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.39 E-value=0.0016 Score=81.00 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.2
Q ss_pred hhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 240 AAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 240 ~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++....++| +.|+||+|+|||||++.+.+..
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 3445555555 8999999999999999999876
No 234
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.38 E-value=0.0023 Score=63.78 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=29.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
..|+|.|+||+||||+++.+|..++.+++. ..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 52 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDMLR 52 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHHH
Confidence 459999999999999999999999976654 445443
No 235
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.38 E-value=0.0018 Score=64.43 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHH
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEM 286 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~ 286 (676)
+.++-|+|.||||+||+|.|+.++..++.+ .++..++...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHH
Confidence 345668899999999999999999998865 4566666543
No 236
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.38 E-value=0.001 Score=71.16 Aligned_cols=30 Identities=40% Similarity=0.677 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....++.| +.|.||+|+|||||.|.+|+..
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444554 8899999999999999999854
No 237
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.37 E-value=0.0016 Score=65.66 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
.|.-|+|.||||+||||+++.++..++.+++ +.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r 65 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLR 65 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHH
Confidence 3556999999999999999999999886655 4555443
No 238
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.36 E-value=0.0035 Score=60.77 Aligned_cols=33 Identities=33% Similarity=0.444 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
-+.|.||+|+||||+++.+++ +|.+++ +..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 478999999999999999998 787765 454444
No 239
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.34 E-value=0.0085 Score=71.58 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=54.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc-----CC--C------------EEEEechhHHHHHhhhhhHHHHHHHHHH-hhCCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA-----GV--P------------FFSLSGSEFIEMFVGVGASRVRDLFNKA-KANSP 307 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~-----~~--p------------~i~is~s~~~~~~~g~~~~~vr~lF~~A-~~~~P 307 (676)
.-++|.||+|+||||+.|.++.-. |. | |-.+...+............++.....+ ....|
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 348999999999999999997432 21 1 1111222222111111111122222222 14778
Q ss_pred eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 308 CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 308 ~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
++|++||+-+-. .......+...++..+. ...+..+|.+|+..+...
T Consensus 754 ~LlLLDEP~~Gl---------D~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 754 SLVILDELGRGT---------STHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CEEEEESTTTTS---------CHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHH
Confidence 999999984432 11223344446666552 123567888899876543
No 240
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.33 E-value=0.015 Score=56.80 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=65.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEE---ec------hhHHHHHh-----------------hhhhHHHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSL---SG------SEFIEMFV-----------------GVGASRVRDLF 299 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~---~~p~i~i---s~------s~~~~~~~-----------------g~~~~~vr~lF 299 (676)
.|++|+++|.|||++|-++|-.+ |..+..+ .+ ..+.+.+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 38999999999999999998766 6776666 22 12333320 00123345555
Q ss_pred HHHhh----CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccccccccCCCcc
Q 005815 300 NKAKA----NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALHRPGRF 375 (676)
Q Consensus 300 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLlrpGRf 375 (676)
..++. ...++|+|||+-....-.-- . ...++..+.. .....-||.|+|.+ +++|+. .-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~----~~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e--~A 171 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-------P----LEEVISALNA--RPGHQTVIITGRGC---HRDILD--LA 171 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-------C----HHHHHHHHHT--SCTTCEEEEECSSC---CHHHHH--HC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-------C----HHHHHHHHHh--CcCCCEEEEECCCC---cHHHHH--hC
Confidence 55544 44689999999654221110 1 1223333332 22345677777764 334544 55
Q ss_pred ceEEecC
Q 005815 376 DRQVSVG 382 (676)
Q Consensus 376 d~~I~v~ 382 (676)
|.+-++.
T Consensus 172 D~VTem~ 178 (196)
T 1g5t_A 172 DTVSELR 178 (196)
T ss_dssp SEEEECC
T ss_pred cceeeec
Confidence 6555554
No 241
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.30 E-value=0.0019 Score=63.72 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
+.-|+|.||||+||||+++.+|..++.++ ++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~ 40 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLL 40 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHH
Confidence 45699999999999999999999998754 4544544
No 242
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.29 E-value=0.0044 Score=70.52 Aligned_cols=32 Identities=41% Similarity=0.603 Sum_probs=25.5
Q ss_pred hhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 240 AAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 240 ~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++.....++| +.|.||+|+|||||++.+++..
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3444555555 8899999999999999999865
No 243
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.28 E-value=0.027 Score=61.88 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=48.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH-------HH---hh----------hhhHHHHHHHHHHh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE-------MF---VG----------VGASRVRDLFNKAK 303 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~-------~~---~g----------~~~~~vr~lF~~A~ 303 (676)
|.-++++|++|+||||++..+|..+ |..+..+++..+.. .+ .+ .....+++.++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 5669999999999999999998765 56666666532211 00 00 12233466777887
Q ss_pred hCCCeEEEEcCCcc
Q 005815 304 ANSPCLVFIDEIDA 317 (676)
Q Consensus 304 ~~~P~ILfIDEID~ 317 (676)
.....+++||..-.
T Consensus 180 ~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 180 SKGVDIIIVDTAGR 193 (443)
T ss_dssp HTTCSEEEEECCCC
T ss_pred hCCCCEEEEECCCc
Confidence 77788999998743
No 244
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.27 E-value=0.0031 Score=60.05 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=27.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLS 279 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is 279 (676)
|.|.|+||+||||+++.++..+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 89988765
No 245
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.22 E-value=0.0025 Score=67.25 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
++.++|+||+|+|||++++.+|.+++.+++.++.-.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 456999999999999999999999998888776543
No 246
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.22 E-value=0.0041 Score=60.32 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF 283 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~ 283 (676)
+.-+.|.||+|+||||+++++++.+ |...+.+++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3458899999999999999999987 555456665443
No 247
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.21 E-value=0.0027 Score=62.63 Aligned_cols=34 Identities=35% Similarity=0.691 Sum_probs=28.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
++|.||||+||+|.|+.+|..+|++. ++..++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 78899999999999999999988764 56566554
No 248
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.20 E-value=0.024 Score=62.04 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=45.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH----------HHhhh----------hhHHHHHHHHHHh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE----------MFVGV----------GASRVRDLFNKAK 303 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~----------~~~g~----------~~~~vr~lF~~A~ 303 (676)
|.-+++.||+|+||||++..+|..+ |..+..+++..+.. ...+. .....+..+..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4568999999999999999999765 56666555432110 00111 1112344556666
Q ss_pred hCCCeEEEEcCCccc
Q 005815 304 ANSPCLVFIDEIDAV 318 (676)
Q Consensus 304 ~~~P~ILfIDEID~l 318 (676)
...+.+|+||....+
T Consensus 177 ~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTCSEEEEEECCCS
T ss_pred hcCCCEEEEECCCCc
Confidence 667899999987443
No 249
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.19 E-value=0.01 Score=66.21 Aligned_cols=39 Identities=13% Similarity=0.011 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGS 281 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s 281 (676)
|.....-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34334459999999999999999998764 5688888754
No 250
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.19 E-value=0.0029 Score=61.96 Aligned_cols=29 Identities=34% Similarity=0.564 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
|+|.|+||+||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 88999999999999999999998776544
No 251
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.16 E-value=0.0033 Score=61.79 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=28.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
.-+.|.||+|+||||+++.+++.++++++ +..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCccee
Confidence 35899999999999999999999987665 444443
No 252
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.14 E-value=0.016 Score=60.32 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=27.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGS 281 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s 281 (676)
++-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4569999999999999999998754 5566666543
No 253
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.13 E-value=0.0022 Score=62.07 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
-|.|.|++|+||||+++.+++ .|++++.. .++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~--d~~~~ 36 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA--DKLIH 36 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH--HHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc--cHHHH
Confidence 488999999999999999999 88766544 44443
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.09 E-value=0.0031 Score=60.54 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 277 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~ 277 (676)
|.|.|+||+||||+++.+++.++.+++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 7899999999999999999999987664
No 255
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.07 E-value=0.017 Score=63.62 Aligned_cols=39 Identities=28% Similarity=0.141 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS 281 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s 281 (676)
|.....-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 34433449999999999999999998765 6788887653
No 256
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.05 E-value=0.0045 Score=59.17 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLS 279 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is 279 (676)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 99988664
No 257
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.04 E-value=0.0042 Score=59.82 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCCEEEEe
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSLS 279 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~-~~p~i~is 279 (676)
+.-|.|.|++|+||||+++.++..+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3458999999999999999999998 57887765
No 258
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.04 E-value=0.028 Score=57.41 Aligned_cols=29 Identities=38% Similarity=0.707 Sum_probs=23.2
Q ss_pred CCCCC-CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIP-KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p-~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
....+ .-+.|.||+|+|||||++.+++..
T Consensus 25 sl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 25 NLEVNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 238899999999999999999864
No 259
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.01 E-value=0.0037 Score=61.87 Aligned_cols=34 Identities=18% Similarity=0.461 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
|+|.||||+||||+++.++..++.++ ++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~r 36 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIFR 36 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHHH
Confidence 78999999999999999999998655 45545443
No 260
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.98 E-value=0.0054 Score=59.17 Aligned_cols=30 Identities=37% Similarity=0.658 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
-|.|.|++|+|||++++.+|..+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999887754
No 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.97 E-value=0.017 Score=69.46 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=33.0
Q ss_pred ccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHh
Q 005815 217 AGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 217 ~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e 270 (676)
+|.+...++|.+.+... ...+-+.|+||.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 78888887777665421 11356899999999999999999863
No 262
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.91 E-value=0.01 Score=63.98 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=23.2
Q ss_pred hhCCCCCCe-EEEEcCCCChHHHHHHHHHHhc
Q 005815 241 AVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 241 ~~g~~~p~g-vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.....+..| +.|+||+|+|||+|.++|+..+
T Consensus 53 ~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 53 QLELELGGGFCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEECCSSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred eEEEecCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 334444444 7899999999999999995544
No 263
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.89 E-value=0.0033 Score=78.27 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 293 SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 293 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
++.|-.+.+|....|.||++||.-+-. +.+.++.+.+.+..+ . .+..+|..+++...+
T Consensus 1222 QrQriaiARAllr~~~ILiLDEaTSaL----------D~~tE~~Iq~~l~~~---~--~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEATSAL----------DTESEKVVQEALDRA---R--EGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESCCCST----------TSHHHHHHHHHHTTT---S--SSSEEEEECSSSSTT
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccccC----------CHHHHHHHHHHHHHH---c--CCCEEEEeccCHHHH
Confidence 344555666667889999999985543 445555555544432 2 234566677887654
No 264
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.88 E-value=0.01 Score=66.97 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 293 SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 293 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
.+.|-.+..|....|.||++||.-+-. +......+..++..+. ...+..||..|+..+.
T Consensus 390 q~QRv~iAraL~~~p~lLlLDEPT~gL----------D~~~~~~i~~~l~~l~---~~~g~tvi~vsHdl~~ 448 (538)
T 3ozx_A 390 ELQKLYIAATLAKEADLYVLDQPSSYL----------DVEERYIVAKAIKRVT---RERKAVTFIIDHDLSI 448 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTC----------CHHHHHHHHHHHHHHH---HHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH
Confidence 445667778888999999999975442 4444555555665542 2234566777777554
No 265
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.88 E-value=0.0054 Score=61.48 Aligned_cols=30 Identities=30% Similarity=0.619 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 276 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i 276 (676)
|.-+.|.||||+||||+++.++..+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 556999999999999999999999887654
No 266
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.87 E-value=0.018 Score=68.99 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=53.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh-----cCC--CEE------------EEechhHHHHHhhhhhHHHHHHHHHH-hhCCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE-----AGV--PFF------------SLSGSEFIEMFVGVGASRVRDLFNKA-KANSP 307 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e-----~~~--p~i------------~is~s~~~~~~~g~~~~~vr~lF~~A-~~~~P 307 (676)
.-++|.||+|+||||+.|.+|.- .|. |-- .+...+...............+-..+ ....|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~ 742 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD 742 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence 34899999999999999999532 232 211 11111211111111111122211111 14678
Q ss_pred eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 308 CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 308 ~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
++|++||+-.-. .......+...++..+.. ..+..+|.+|+..+..
T Consensus 743 sLlLLDEp~~Gl---------D~~~~~~i~~~il~~l~~---~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 743 SLIIIDELGRGT---------STYDGFGLAWAISEYIAT---KIGAFCMFATHFHELT 788 (934)
T ss_dssp CEEEEESCSCSS---------CHHHHHHHHHHHHHHHHH---TTCCEEEEEESCGGGG
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHHHHHHHHh---cCCCEEEEEcCcHHHH
Confidence 999999984421 112233344566665531 2345778888886543
No 267
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.83 E-value=0.012 Score=57.32 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=34.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHhhhhhHHHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLF 299 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~g~~~~~vr~lF 299 (676)
-|.|+|++|+||||+++.++..+|++++ ++.++.....+.....+.+.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~~~~~~~~i~~~f 62 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEVLEEVKEKLVELF 62 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHHHHHHHHHHHHHh
Confidence 3889999999999999999998887765 455555443333233333333
No 268
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.82 E-value=0.0016 Score=69.52 Aligned_cols=30 Identities=30% Similarity=0.622 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
.++|.||||+|||++++++|+.++.+|+.+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 599999999999999999999988766443
No 269
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.80 E-value=0.011 Score=57.94 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
++-+.|.||+|+|||+|++++++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458999999999999999999865
No 270
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.78 E-value=0.007 Score=60.99 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCC--------EEEEechhHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSLSGSEFI 284 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p--------~i~is~s~~~ 284 (676)
|.-|.|.|++|+|||++++.++..++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4458999999999999999999998876 3467776664
No 271
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.78 E-value=0.0081 Score=58.74 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
.-+.|.||+|+|||++++.+++...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4488999999999999999998763
No 272
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.77 E-value=0.0065 Score=58.31 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+.-|.|.|++|+|||++++.++.. |.+++ +..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~ 43 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAA 43 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHH
Confidence 345899999999999999999998 87765 4555543
No 273
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.77 E-value=0.0063 Score=61.22 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
|.-+.|.||||+|||++++.+|..++.+++ +...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~--d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL--DTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCCcH
Confidence 446999999999999999999999987654 44444
No 274
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.77 E-value=0.0092 Score=57.95 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcC
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
.++-++|.||||+|||++++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345599999999999999999999874
No 275
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.76 E-value=0.023 Score=60.29 Aligned_cols=38 Identities=24% Similarity=0.138 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 243 GAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 243 g~~~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
|.....-++|.|+||+|||+|+..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33333449999999999999999998764 677777765
No 276
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0086 Score=68.50 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=59.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhc----CC-----CEEEE----------echhHHHHH-----------------hh----
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA----GV-----PFFSL----------SGSEFIEMF-----------------VG---- 289 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~----~~-----p~i~i----------s~s~~~~~~-----------------~g---- 289 (676)
+.|.||+|+|||||++.+++.. |. .+-++ +..++.... ++
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 460 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI 460 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh
Confidence 7899999999999999999864 21 11111 111111000 00
Q ss_pred --------hhhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 290 --------VGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 290 --------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
.+..+.|-.+..|....|.||++||.-+-. +......+.+++..+- ...+..||..|+.
T Consensus 461 ~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gL----------D~~~~~~i~~ll~~l~---~~~g~tviivtHd 527 (608)
T 3j16_B 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYL----------DSEQRIICSKVIRRFI---LHNKKTAFIVEHD 527 (608)
T ss_dssp SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTC----------CHHHHHHHHHHHHHHH---HHHTCEEEEECSC
T ss_pred hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEeCC
Confidence 022344566777777899999999974432 4444455555555542 1123456777777
Q ss_pred ccc
Q 005815 362 PEI 364 (676)
Q Consensus 362 ~~~ 364 (676)
.+.
T Consensus 528 l~~ 530 (608)
T 3j16_B 528 FIM 530 (608)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 277
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.74 E-value=0.057 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAG 269 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~ 269 (676)
+.+++.||+|+|||++...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 4599999999999987766643
No 278
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.72 E-value=0.003 Score=72.07 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=26.2
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+++.....++| +.|.||+|+|||||++.+++..
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34445555555 8899999999999999999865
No 279
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.67 E-value=0.0085 Score=57.81 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=25.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCC--EEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSL 278 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p--~i~i 278 (676)
.-|+|.|+||+||||+++.++..++.. ++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 348999999999999999999988763 5443
No 280
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.65 E-value=0.062 Score=51.63 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.+++.+|+|+|||.++-..+.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 459999999999999988877653
No 281
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.64 E-value=0.0063 Score=61.81 Aligned_cols=31 Identities=39% Similarity=0.637 Sum_probs=27.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
..|.|.|++|+||||+++.+|+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 3599999999999999999999999877653
No 282
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.62 E-value=0.018 Score=64.86 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
+.|-.+..|....|.||++||.-+-. +......+..++..+. . +..||..|++.+.++
T Consensus 144 ~Qrv~iA~aL~~~p~illlDEPts~L----------D~~~~~~l~~~l~~l~---~--g~tii~vsHdl~~~~ 201 (538)
T 3ozx_A 144 LQRLLVAASLLREADVYIFDQPSSYL----------DVRERMNMAKAIRELL---K--NKYVIVVDHDLIVLD 201 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTC----------CHHHHHHHHHHHHHHC---T--TSEEEEECSCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHh---C--CCEEEEEEeChHHHH
Confidence 34555666777899999999975543 3444455566666653 2 456777788766543
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.62 E-value=0.0035 Score=60.75 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVP 274 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p 274 (676)
+.-|+|.|+||+||||+++.++..++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4459999999999999999999987543
No 284
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.60 E-value=0.012 Score=56.06 Aligned_cols=36 Identities=36% Similarity=0.400 Sum_probs=28.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF 283 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~ 283 (676)
.-++|.|+||+|||++++.++..+ +.++..++...+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 448899999999999999999876 455666665443
No 285
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.60 E-value=0.044 Score=64.65 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e 270 (676)
.-++|+||+|+|||++.|.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 35899999999999999999874
No 286
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.60 E-value=0.011 Score=57.58 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=22.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
.-+.|.||+|+|||||++.+++.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3488999999999999999999874
No 287
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.55 E-value=0.0056 Score=76.05 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+.|-.+.+|....|.||++||.-+-. +.+.++.+.+.+..+. .+..+|..|++.+.+
T Consensus 532 ~QriaiARal~~~p~iliLDEpts~L----------D~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 532 KQRIAIARALVRNPKILLLDEATSAL----------DTESEAVVQAALDKAR-----EGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTCSS----------CHHHHHHHHHHHHHHH-----TTSEEEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 44555666666789999999986553 4445555655555442 234677778887654
No 288
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.52 E-value=0.009 Score=58.36 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=41.5
Q ss_pred EEEEcCCCChHH-HHHHHHHHh--cCCCEEEEech---hHHHHHh---hh-----hhHHHHHHHHHHhhCCCeEEEEcCC
Q 005815 250 VLLVGPPGTGKT-LLAKAIAGE--AGVPFFSLSGS---EFIEMFV---GV-----GASRVRDLFNKAKANSPCLVFIDEI 315 (676)
Q Consensus 250 vLL~GPpGTGKT-~LArAlA~e--~~~p~i~is~s---~~~~~~~---g~-----~~~~vr~lF~~A~~~~P~ILfIDEI 315 (676)
.++|||.|+||| .|.+++.+. .+..++.+... .+.+..+ |. ......++++..+ ...+|+|||+
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDEa 100 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDEG 100 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESSG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEch
Confidence 788999999999 899998764 46777777643 2211111 10 0011223333332 2469999999
Q ss_pred ccc
Q 005815 316 DAV 318 (676)
Q Consensus 316 D~l 318 (676)
..+
T Consensus 101 QFf 103 (195)
T 1w4r_A 101 QFF 103 (195)
T ss_dssp GGC
T ss_pred hhh
Confidence 998
No 289
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.51 E-value=0.022 Score=65.12 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=60.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---------CCEEEE----------echhHHHHH-h-h-h----------------
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSL----------SGSEFIEMF-V-G-V---------------- 290 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~---------~p~i~i----------s~s~~~~~~-~-g-~---------------- 290 (676)
-+.|.||+|+|||||++++++... ..+-++ +..++.... . . .
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~ 463 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID 463 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCch
Confidence 388999999999999999998641 111111 111211111 0 0 0
Q ss_pred ----------hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 291 ----------GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 291 ----------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
+.++.|-.+..|....|.+|++||.-+-. +......+.+++..+. ...+..||.+|+
T Consensus 464 ~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~L----------D~~~~~~l~~~l~~l~---~~~g~tvi~vsH 530 (607)
T 3bk7_A 464 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYL----------DVEQRLAVSRAIRHLM---EKNEKTALVVEH 530 (607)
T ss_dssp TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTC----------CHHHHHHHHHHHHHHH---HHTTCEEEEECS
T ss_pred HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEeC
Confidence 12233445666677889999999975442 4455555666666552 122345677777
Q ss_pred Cccc
Q 005815 361 RPEI 364 (676)
Q Consensus 361 ~~~~ 364 (676)
..+.
T Consensus 531 d~~~ 534 (607)
T 3bk7_A 531 DVLM 534 (607)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7554
No 290
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.46 E-value=0.032 Score=55.94 Aligned_cols=34 Identities=32% Similarity=0.640 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
+-|.||||+||||+++.++..++++++ +..++..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 678999999999999999999998765 4445543
No 291
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.45 E-value=0.0044 Score=60.10 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
+.-|+|.|+||+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45599999999999999999998763
No 292
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.43 E-value=0.0065 Score=64.39 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=30.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
+-|+|.||+|+|||+|+..+|..++.+++..+.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 45899999999999999999999998887776543
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.42 E-value=0.0093 Score=56.85 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+-+.|.||+|+|||||++.+++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999875
No 294
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.41 E-value=0.011 Score=57.83 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSEFI 284 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~~~ 284 (676)
+.-++|.|+||+||||+++.+++.+ |.+++.+++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 3458899999999999999999865 4678888765543
No 295
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.39 E-value=0.0078 Score=63.03 Aligned_cols=37 Identities=32% Similarity=0.552 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
.|+-++|.||+|+|||+|+..+|...+.++++.+.-.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 3556899999999999999999999988777766543
No 296
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.34 E-value=0.0079 Score=59.43 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=22.0
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+..+...+++| +.|.||+|+|||||++.+++..
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34445555555 8899999999999999999976
No 297
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.34 E-value=0.027 Score=54.62 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=28.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSE 282 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~ 282 (676)
.-+.|.||+|+|||++++.+++.+ +.+++..+...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 348899999999999999999875 66666665443
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.34 E-value=0.013 Score=55.79 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
-++|.||||+||||+++.+++..+. .+.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 3789999999999999999985532 3556665543
No 299
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.32 E-value=0.01 Score=60.03 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 276 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i 276 (676)
-|.|.||+|+||||+++.+|..+|.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4889999999999999999999987655
No 300
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.32 E-value=0.014 Score=63.60 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEF 283 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~ 283 (676)
|.-|+|+|+||+||||+++.++..++..++ +..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~ 292 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTL 292 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchH
Confidence 445899999999999999999999876544 44443
No 301
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.32 E-value=0.044 Score=52.58 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=14.9
Q ss_pred CeEEEEcCCCChHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLA 264 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LA 264 (676)
+.+++.+|+|+|||..+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 46999999999999863
No 302
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.30 E-value=0.012 Score=57.59 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=27.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
.-+.|.|++|+|||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3589999999999999999999999776543
No 303
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.025 Score=64.75 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 296 RDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 296 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
|-.+..|....|.+|++||.-+-. +......+..++..+. . .+..||..|++.+.+.
T Consensus 229 rv~iAraL~~~p~llllDEPts~L----------D~~~~~~l~~~l~~l~---~-~g~tvi~vtHdl~~~~ 285 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYL----------DVKQRLNAAQIIRSLL---A-PTKYVICVEHDLSVLD 285 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTC----------CHHHHHHHHHHHHGGG---T-TTCEEEEECSCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECcccCC----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHHH
Confidence 444555666889999999975543 3444445556666553 2 2456777788766543
No 304
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.28 E-value=0.0086 Score=61.64 Aligned_cols=36 Identities=25% Similarity=0.588 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechhHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSLSGSEFI 284 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~-~~p~i~is~s~~~ 284 (676)
|.-|+|.|+||+||||+++.++... +. ..++...+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccHHH
Confidence 3458999999999999999999864 54 444544443
No 305
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.27 E-value=0.0099 Score=57.21 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.-+.|.||+|+||||+++.+++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999876
No 306
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.26 E-value=0.011 Score=57.87 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=27.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
.-|.|.|++|+||||+++.++. +|.+++ +..++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~i--d~D~~~ 38 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVI--DADIIA 38 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEE--EccHHH
Confidence 4589999999999999999998 777655 444443
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.26 E-value=0.0072 Score=58.69 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=24.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-CCCEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA-GVPFFS 277 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~-~~p~i~ 277 (676)
-+.|.||||+||||+++.+++.+ +++++.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 37899999999999999999987 554443
No 308
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.26 E-value=0.013 Score=58.33 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=29.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFI 284 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~ 284 (676)
+.-+.|.|++|+|||++++.+++.+|++++ +..++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~~ 51 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 51 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCee
Confidence 345899999999999999999999997765 444443
No 309
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.23 E-value=0.024 Score=63.91 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+.|-.+..|....|.+|++||.-+-. +......+.+++..+.. .+..||.+|++.+.+
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~L----------D~~~~~~l~~~L~~l~~----~g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYL----------DIRQRLNAARAIRRLSE----EGKSVLVVEHDLAVL 221 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTC----------CHHHHHHHHHHHHHHHH----TTCEEEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHH
Confidence 44556666777899999999975543 44444555556655532 245677778876543
No 310
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.21 E-value=0.011 Score=55.61 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|.||.|+|||||+|++++..
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999999986
No 311
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.17 E-value=0.011 Score=66.13 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=44.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechh-HHH---HH--------hhhhhHHHHHHHHHHhhCCCeEEEEc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGSE-FIE---MF--------VGVGASRVRDLFNKAKANSPCLVFID 313 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s~-~~~---~~--------~g~~~~~vr~lF~~A~~~~P~ILfID 313 (676)
.+++|.||+|+||||+++++++... ...+.+.... +.- .. .+...-.+.+++..+..+.|.+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4599999999999999999998773 2344443321 110 00 01111234556666667889999999
Q ss_pred CCc
Q 005815 314 EID 316 (676)
Q Consensus 314 EID 316 (676)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 973
No 312
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.15 E-value=0.029 Score=63.27 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=60.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---------CCEEEE----------echhHHHHH--hh--h---------------
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSL----------SGSEFIEMF--VG--V--------------- 290 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~---------~p~i~i----------s~s~~~~~~--~g--~--------------- 290 (676)
-+.|.||+|+|||||++++++... ..+-++ +..+..... .. .
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 393 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIID 393 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh
Confidence 388999999999999999998641 112122 111111111 00 0
Q ss_pred ----------hhHHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecC
Q 005815 291 ----------GASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATN 360 (676)
Q Consensus 291 ----------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN 360 (676)
+.++.|-.+..+....|.+|++||.-+-. +......+.+++..+. ...+..||..|+
T Consensus 394 ~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~L----------D~~~~~~i~~~l~~l~---~~~g~tvi~vsH 460 (538)
T 1yqt_A 394 LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYL----------DVEQRLAVSRAIRHLM---EKNEKTALVVEH 460 (538)
T ss_dssp GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTC----------CHHHHHHHHHHHHHHH---HHHTCEEEEECS
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEeC
Confidence 22334556666777899999999975432 4455555666666542 112345677777
Q ss_pred Cccc
Q 005815 361 RPEI 364 (676)
Q Consensus 361 ~~~~ 364 (676)
..+.
T Consensus 461 d~~~ 464 (538)
T 1yqt_A 461 DVLM 464 (538)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6554
No 313
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.10 E-value=0.048 Score=52.93 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=40.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH---H----Hhhhh-----hHHHHHHHHHHhhCCCeEEEEc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE---M----FVGVG-----ASRVRDLFNKAKANSPCLVFID 313 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~---~----~~g~~-----~~~vr~lF~~A~~~~P~ILfID 313 (676)
-.+++||+|+|||+.+-.++..+ +..++.+...-... . ..|.. .....++++.+.. ...+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEEE
Confidence 37889999999999988887765 66665553211000 0 01100 0111245554432 34799999
Q ss_pred CCccc
Q 005815 314 EIDAV 318 (676)
Q Consensus 314 EID~l 318 (676)
|+..+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 99887
No 314
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.09 E-value=0.049 Score=61.07 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=32.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEMF 287 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~~ 287 (676)
.-|+|+|.||+|||++++.+|..+ +.+...++..++....
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 458999999999999999999987 5566677877766543
No 315
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.07 E-value=0.053 Score=63.76 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=19.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e 270 (676)
..+++.||+|+|||+++..++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999988777654
No 316
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.03 E-value=0.044 Score=62.68 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e 270 (676)
+-++++||||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 35999999999999998887654
No 317
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.02 E-value=0.017 Score=56.01 Aligned_cols=24 Identities=42% Similarity=0.681 Sum_probs=21.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+-+.|.||+|+|||||++.+++..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999865
No 318
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.99 E-value=0.056 Score=63.41 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e 270 (676)
..-++|.||+|+|||++.|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 345899999999999999999874
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.96 E-value=0.013 Score=56.04 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+-+.|.||+|+||||+++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999999875
No 320
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.95 E-value=0.018 Score=68.95 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
+.|-.+..|....|.+|++||.-+-. +......+.+++.. .+..||.+|++.+.+.
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~L----------D~~~~~~l~~~L~~-------~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHL----------DTVNVAWLVNYLNT-------CGITSITISHDSVFLD 609 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTC----------CHHHHHHHHHHHHH-------SCSEEEEECSCHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCC----------CHHHHHHHHHHHHh-------CCCEEEEEECCHHHHH
Confidence 34455666677889999999975543 44445555555554 1346777788765543
No 321
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.94 E-value=0.016 Score=71.99 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 293 SRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 293 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
++.|-.+.+|....|.||++||.-+-. +...+..+.+.+.... .+..+|..|++.+.+
T Consensus 1176 q~Qrv~iARal~~~p~iLiLDEpTs~l----------D~~~~~~i~~~l~~~~-----~~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHILLLDEATSAL----------DTESEKVVQEALDKAR-----EGRTCIVIAHRLSTI 1233 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSEEEESCSSSC----------CHHHHHHHHHHHHHHS-----SSSCEEEECSCTTGG
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHhC-----CCCEEEEEecCHHHH
Confidence 345556667777889999999975542 4555666666666542 133466667776554
No 322
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.92 E-value=0.012 Score=62.53 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=27.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~ 280 (676)
+-|+|.||+|+|||++++.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 458999999999999999999998866655543
No 323
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.92 E-value=0.012 Score=57.17 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
.-+.|.||+|+|||||++.+++..+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999999876
No 324
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.91 E-value=0.031 Score=63.95 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCcccc
Q 005815 294 RVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEIL 365 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~L 365 (676)
+.|-.+..|....|.+|++||.-+-. +......+.+++..+.. .+..||.+|++.+.+
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~L----------D~~~~~~l~~~L~~l~~----~g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYL----------DIRQRLKVARVIRRLAN----EGKAVLVVEHDLAVL 291 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTC----------CHHHHHHHHHHHHHHHH----TTCEEEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHHh----cCCEEEEEecChHHH
Confidence 34555666777899999999975543 44445555666666532 245677788876543
No 325
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.90 E-value=0.012 Score=57.84 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLS 279 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is 279 (676)
.++++|.||+|+|||+||..++...+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 35799999999999999999998865 555443
No 326
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.89 E-value=0.015 Score=59.88 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=27.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIE 285 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~ 285 (676)
.-|.|+|++|+||||+++.++ ++|.++ +++.++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~~ 110 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLGH 110 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHHH
Confidence 458999999999999999999 678765 45555543
No 327
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.87 E-value=0.014 Score=61.25 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=28.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
+-++|.||+|+|||+|+..+|...+..+++.+.-.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCccc
Confidence 34889999999999999999999887666665443
No 328
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.87 E-value=0.17 Score=56.24 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-++|.||+|+|||||++.+|+.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 48899999999999999999875
No 329
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.84 E-value=0.016 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+||||+++.+++..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48899999999999999999985
No 330
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.78 E-value=0.014 Score=67.45 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCC---eEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccccccc
Q 005815 294 RVRDLFNKAKANSP---CLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALH 370 (676)
Q Consensus 294 ~vr~lF~~A~~~~P---~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld~aLl 370 (676)
+.|-.+..|....| .+|++||.-+-. +......+.+++..+. . .+..||..|++.+.+
T Consensus 549 ~qrv~iAraL~~~p~~p~llllDEPt~~L----------D~~~~~~i~~~l~~l~---~-~g~tvi~vtHd~~~~----- 609 (670)
T 3ux8_A 549 AQRVKLAAELHRRSNGRTLYILDEPTTGL----------HVDDIARLLDVLHRLV---D-NGDTVLVIEHNLDVI----- 609 (670)
T ss_dssp HHHHHHHHHHHSCCCSCEEEEEESTTTTC----------CHHHHHHHHHHHHHHH---H-TTCEEEEECCCHHHH-----
T ss_pred HHHHHHHHHHhhCCCCCcEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---H-CCCEEEEEeCCHHHH-----
Confidence 34455555655544 699999975442 4445555666666653 1 245677888876532
Q ss_pred CCCccceEEec
Q 005815 371 RPGRFDRQVSV 381 (676)
Q Consensus 371 rpGRfd~~I~v 381 (676)
+ ..|+++.+
T Consensus 610 ~--~~d~i~~l 618 (670)
T 3ux8_A 610 K--TADYIIDL 618 (670)
T ss_dssp T--TCSEEEEE
T ss_pred H--hCCEEEEe
Confidence 2 34565555
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.77 E-value=0.015 Score=58.23 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhcCCC
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEAGVP 274 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~~~p 274 (676)
+....++| +-|.||+|+||||+++.+++.+|..
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34444555 7899999999999999999987654
No 332
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.74 E-value=0.019 Score=56.10 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 277 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~ 277 (676)
-|.|.||+|+|||++++.+|..+|.+|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48899999999999999999999999883
No 333
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.67 E-value=0.013 Score=61.17 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=26.2
Q ss_pred HhhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 239 FAAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 239 ~~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
++.+...+++| +.|+||+|+|||||++.+++..
T Consensus 116 L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 116 LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 33344455554 8999999999999999999986
No 334
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.64 E-value=0.017 Score=56.28 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
-+.|.||+|+|||||++++++...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 388999999999999999999863
No 335
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.60 E-value=0.13 Score=53.32 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=36.6
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCC----CCCCeEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEec
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGA----KIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSLSG 280 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~----~~p~gvLL~GPpGTGKT~LArAlA~e~-----~~p~i~is~ 280 (676)
.+|+++.-.+...+.|.+. .+..+..++.... ...+.+++.+|+|+|||+.+-..+-+. +...+.+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 4677765555555555431 1222222221111 113579999999999999866554433 444555543
No 336
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.58 E-value=0.048 Score=62.70 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSE 282 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~ 282 (676)
.|++||||||||+++-.+...+ +.+++.+..+.
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 7999999999998665554433 66777776654
No 337
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.50 E-value=0.2 Score=48.54 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=32.6
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHHHHHHHHh
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGA---KIPKGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~---~~p~gvLL~GPpGTGKT~LArAlA~e 270 (676)
.+|+|+.-.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4588875555555555431 1222333322111 11245999999999999876655543
No 338
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.47 E-value=0.086 Score=63.78 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=54.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHH-----hcCCCE--------------EEEechhHHH----HHhhhhhHHHHHHHHHHhh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAG-----EAGVPF--------------FSLSGSEFIE----MFVGVGASRVRDLFNKAKA 304 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~-----e~~~p~--------------i~is~s~~~~----~~~g~~~~~vr~lF~~A~~ 304 (676)
.-++|+||+|+|||++.|.++- ..|..+ ..+...+... .+.+.. + +-....+..
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em-~--~~a~al~la 866 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVEL-S--ETASILMHA 866 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHH-H--HHHHHHHHC
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHH-H--HHHHHHHhC
Confidence 4589999999999999999932 123211 1111111111 111111 1 112223345
Q ss_pred CCCeEEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccccc
Q 005815 305 NSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILD 366 (676)
Q Consensus 305 ~~P~ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~Ld 366 (676)
..|++|++||+-.-. ........+..++..+. ...+..+|.+|+..+...
T Consensus 867 ~~~sLlLLDEp~~Gt---------d~~dg~~~~~~il~~L~---~~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 867 TAHSLVLVDELGRGT---------ATFDGTAIANAVVKELA---ETIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp CTTCEEEEECTTTTS---------CHHHHHHHHHHHHHHHH---HTSCCEEEEECCCHHHHH
T ss_pred CCCcEEEEECCCCCC---------ChHHHHHHHHHHHHHHH---hcCCCEEEEEeCCHHHHH
Confidence 678999999984321 11122334455565552 222567888899876543
No 339
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.40 E-value=0.021 Score=56.48 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=14.9
Q ss_pred eEEEEcCCCChHHHHHHHHH-Hhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIA-GEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA-~e~ 271 (676)
-+.|.||+|+||||+++.++ +..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 38899999999999999999 764
No 340
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.24 E-value=0.079 Score=51.87 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=31.0
Q ss_pred CCCCCcccccccch-hhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHHHH
Q 005815 207 PNTGVTFDDVAGVD-EAKQDFQEIVQFLQTPEKFAAVGA---KIPKGVLLVGPPGTGKTLLAK 265 (676)
Q Consensus 207 ~~~~~~f~dv~G~~-~~k~~L~elv~~l~~~~~~~~~g~---~~p~gvLL~GPpGTGKT~LAr 265 (676)
+.+..+|+|..+.. +..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 45566788854443 343333321 1333333322211 123569999999999998543
No 341
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.23 E-value=0.061 Score=56.72 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+.-+.|.||+|+||||+++.+|+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34558999999999999999999865
No 342
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.21 E-value=0.11 Score=50.46 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG---AKIPKGVLLVGPPGTGKTLL 263 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g---~~~p~gvLL~GPpGTGKT~L 263 (676)
..+|+++.-.+...+.+.+. .+..+..++... ....+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 45788886555555555432 122232222211 11125699999999999987
No 343
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.19 E-value=0.044 Score=58.52 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=43.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC--CCEEEEech-hHH--------------HHHhhh-hhHHHHHHHHHHhhCCCeE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSLSGS-EFI--------------EMFVGV-GASRVRDLFNKAKANSPCL 309 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~--~p~i~is~s-~~~--------------~~~~g~-~~~~vr~lF~~A~~~~P~I 309 (676)
..++|.||+|+|||||++++++... .-.+.+... ++. +...+. ....+++.+..+....|..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 3599999999999999999998763 223333321 100 000010 1223567777777788999
Q ss_pred EEEcCCc
Q 005815 310 VFIDEID 316 (676)
Q Consensus 310 LfIDEID 316 (676)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999974
No 344
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.19 E-value=0.03 Score=53.99 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSE 282 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~ 282 (676)
+|++|++|+|||++|..++.. +.|.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887644
No 345
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.10 E-value=0.041 Score=57.29 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.-+.|.||+|+||||+++.+|+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3448899999999999999999875
No 346
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.10 E-value=0.038 Score=63.26 Aligned_cols=37 Identities=32% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF 283 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~ 283 (676)
+.-|+|+|+||+||||++++++..+ |.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 3458999999999999999999998 999999876544
No 347
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.03 E-value=0.064 Score=56.35 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
.++-++++||+|+||||++..+|..+ +..+..+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34558999999999999999999865 555665544
No 348
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.01 E-value=0.15 Score=50.05 Aligned_cols=53 Identities=25% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG---AKIPKGVLLVGPPGTGKTLLA 264 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g---~~~p~gvLL~GPpGTGKT~LA 264 (676)
..+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 34688876555555555431 122222222211 111356999999999999853
No 349
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.00 E-value=0.024 Score=61.40 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=27.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~ 280 (676)
+-|+|.||+|+|||+|+..+|..++..+++.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 358899999999999999999998877665544
No 350
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.92 E-value=0.095 Score=54.26 Aligned_cols=72 Identities=26% Similarity=0.284 Sum_probs=45.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh----HHH---HH---hh---------hhh-HHHHHHHHHHh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSE----FIE---MF---VG---------VGA-SRVRDLFNKAK 303 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~----~~~---~~---~g---------~~~-~~vr~lF~~A~ 303 (676)
++-+.++|++|+|||++++.+|..+ +..+..+++.- ... .+ .+ ... ...+..++.++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4458889999999999999999865 45555554321 000 00 00 011 22355666665
Q ss_pred hCCCeEEEEcCCccc
Q 005815 304 ANSPCLVFIDEIDAV 318 (676)
Q Consensus 304 ~~~P~ILfIDEID~l 318 (676)
...+.+|+||+.-.+
T Consensus 178 ~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 178 LEARDLILVDTAGRL 192 (295)
T ss_dssp HHTCCEEEEECCCCS
T ss_pred hCCCCEEEEeCCCCc
Confidence 566789999997444
No 351
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.89 E-value=0.032 Score=57.78 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCC-----CEEEE-echhH
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSL-SGSEF 283 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~-----p~i~i-s~s~~ 283 (676)
.|.-|.|.||+|+|||||++.+++.++. +.+.+ +..+|
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3445889999999999999999987742 23444 65554
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.81 E-value=0.025 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
-.+|+||+|+|||++++||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 378999999999999999988764
No 353
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.71 E-value=0.091 Score=51.99 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG---AKIPKGVLLVGPPGTGKTLLAK 265 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g---~~~p~gvLL~GPpGTGKT~LAr 265 (676)
+..+|+++.=.+...+.+.+. .+..+..++... ....+.+++.+|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 446799985455555544321 133333333211 1112469999999999997643
No 354
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.71 E-value=0.23 Score=49.74 Aligned_cols=89 Identities=20% Similarity=0.179 Sum_probs=48.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEech-------hHHHHHhhhh-----hHHHHHHHHHHhhCCCeEEEEcC
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS-------EFIEMFVGVG-----ASRVRDLFNKAKANSPCLVFIDE 314 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s-------~~~~~~~g~~-----~~~vr~lF~~A~~~~P~ILfIDE 314 (676)
.+++||.|+|||+.+-..+..+ |..++.+... .+.+. .|.. .....++++.+ ....+|+|||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViIDE 98 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGIDE 98 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEEEc
Confidence 6789999999997666665443 5555544311 11111 0110 00112345544 3357999999
Q ss_pred CccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCC
Q 005815 315 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNR 361 (676)
Q Consensus 315 ID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~ 361 (676)
+..+. + +.+++..++. .++.||++..+
T Consensus 99 aQF~~-----------~-----v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 99 GQFFP-----------D-----IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp GGGCT-----------T-----HHHHHHHHHH----TTCEEEEECCS
T ss_pred hhhhh-----------h-----HHHHHHHHHh----CCCEEEEEecc
Confidence 98882 1 4555555543 34567776554
No 355
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.59 E-value=0.15 Score=55.76 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=46.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhHH----HH---H---hh---------hh-hHHHHHHHH
Q 005815 245 KIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSEFI----EM---F---VG---------VG-ASRVRDLFN 300 (676)
Q Consensus 245 ~~p~gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~~~----~~---~---~g---------~~-~~~vr~lF~ 300 (676)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+. +. + .+ .. ...++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345679999999999999999998654 6677777664221 10 0 00 01 122356676
Q ss_pred HHhhCCCeEEEEcCCc
Q 005815 301 KAKANSPCLVFIDEID 316 (676)
Q Consensus 301 ~A~~~~P~ILfIDEID 316 (676)
.++...-.+++||=.-
T Consensus 178 ~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 6665455799998753
No 356
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.58 E-value=0.067 Score=61.78 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCe--EEEEcCCccccccCCCCCCCCChHHHHHHHHHHHHhccCCCCCCeEEEEecCCccc
Q 005815 294 RVRDLFNKAKANSPC--LVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEI 364 (676)
Q Consensus 294 ~vr~lF~~A~~~~P~--ILfIDEID~l~~~r~~~~~~~~~~~~~~l~~LL~~ld~~~~~~~ViVIaaTN~~~~ 364 (676)
+.|-.+..|....|. +|++||.-+-. +......+.+++..+.. .+..||..|+..+.
T Consensus 208 ~QRv~iArAL~~~p~~~lLlLDEPtsgL----------D~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 208 AQRIRLATQIGSRLTGVLYVLDEPSIGL----------HQRDNDRLIATLKSMRD----LGNTLIVVEHDEDT 266 (670)
T ss_dssp HHHHHHHHHHHTCCCSCEEEEECTTTTC----------CGGGHHHHHHHHHHHHH----TTCEEEEECCCHHH
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCccCC----------CHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHH
Confidence 344556666667777 99999975543 33344455556665531 24567778887653
No 357
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=93.56 E-value=0.13 Score=44.58 Aligned_cols=61 Identities=15% Similarity=0.279 Sum_probs=39.9
Q ss_pred CCcceeHHHHH-HHHhcCCccEEEEeeCceEEEEEeecccc-cceeEEEEEcCCCcHHHHHHHHh
Q 005815 80 TSNRMTYSRFL-QYLDEGSVKKVDLFENGNVAIAEIFNQAL-DKIQRVKVQLPGLPQELLRKMKE 142 (676)
Q Consensus 80 ~~~~~~~~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 142 (676)
.+.+|+|++|. ++|++|.|++|.++++. ...+...+... .....+.+.++. .+.|.++|++
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~nk~-~v~V~l~~~a~~~~~~~~~f~IGS-vd~FE~~Le~ 76 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVVNKR-FVRVTFTPGKTPVDGQYVWFNIGS-VDTFERNLET 76 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEETTT-EEEEEECTTTSCSTTCCEEEECSC-HHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEEcCC-EEEEEEcCCCcCCCCceEEEEeCC-HHHHHHHHHH
Confidence 45689999999 79999999999987444 33344332221 112335677764 4567777754
No 358
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.55 E-value=0.21 Score=49.05 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGA---KIPKGVLLVGPPGTGKTLLA 264 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~---~~p~gvLL~GPpGTGKT~LA 264 (676)
.+..+|+++.-.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||...
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 3456788885555555555431 1222333322111 11356999999999999863
No 359
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.55 E-value=0.14 Score=50.59 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=23.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSLS 279 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~---~~p~i~is 279 (676)
.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999999888887655 66666654
No 360
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.54 E-value=0.096 Score=55.30 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|.||||+|||||.+++++..
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 8899999999999999999754
No 361
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.54 E-value=0.27 Score=52.11 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=24.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLS 279 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is 279 (676)
.-|.|+|+||+|||+++.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 358999999999999999998765 44444443
No 362
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.51 E-value=0.018 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~ 272 (676)
|.|.|++|+||||+++.++..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 363
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.49 E-value=0.028 Score=58.18 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSLSGSEFI 284 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~---~p~i~is~s~~~ 284 (676)
-|.|.||+|+||||+++.++..++ ..+..++..++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 488999999999999999998765 445556655543
No 364
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.44 E-value=0.058 Score=57.64 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.-+.|.||+|+||||+++.+|+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3448899999999999999999875
No 365
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.40 E-value=0.13 Score=53.33 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=44.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhH----HH---HH---hh---------h-hhHHHHHHHHHHh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEF----IE---MF---VG---------V-GASRVRDLFNKAK 303 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~----~~---~~---~g---------~-~~~~vr~lF~~A~ 303 (676)
+.-+++.|++|+|||+++..+|..+ +..+..+++.-+ .+ .+ .+ . ....++..++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4558889999999999999999765 556666654311 00 00 00 0 1122345666665
Q ss_pred hCCCeEEEEcCCccc
Q 005815 304 ANSPCLVFIDEIDAV 318 (676)
Q Consensus 304 ~~~P~ILfIDEID~l 318 (676)
.....+++||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 455679999985443
No 366
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.37 E-value=0.34 Score=46.25 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.2
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAK 265 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LAr 265 (676)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 569999999999997544
No 367
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.36 E-value=0.092 Score=58.62 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
.++.|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35569999999999999999999655 566666665
No 368
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.34 E-value=0.044 Score=54.58 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 277 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~ 277 (676)
-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 48899999999999999999999999854
No 369
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.33 E-value=0.048 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e 270 (676)
+|+||.|+||+|||++|.++...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 58999999999999999999874
No 370
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.32 E-value=0.25 Score=52.21 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=31.5
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCCC---CCCeEEEEcCCCChHHHHHHHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAK---IPKGVLLVGPPGTGKTLLAKAIA 268 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~---~p~gvLL~GPpGTGKT~LArAlA 268 (676)
...+|+|+.-.+...+.|.+. .+..+..++..... ..+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 346788886555555555431 12222222211111 12469999999999998654443
No 371
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.29 E-value=0.19 Score=55.33 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=30.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIEM 286 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~~ 286 (676)
+.-|+|+|.||+|||++++.++..+ ..+...++..++...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence 3459999999999999999999886 456666666555443
No 372
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.25 E-value=0.021 Score=58.45 Aligned_cols=29 Identities=31% Similarity=0.685 Sum_probs=23.8
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHh
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e 270 (676)
....+++| +.|.||+|+|||||++.+++.
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444554 889999999999999999986
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.15 E-value=0.27 Score=53.60 Aligned_cols=72 Identities=26% Similarity=0.256 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHH----H---HH---hh---------hh-hHHHHHHHHHH
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFI----E---MF---VG---------VG-ASRVRDLFNKA 302 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~----~---~~---~g---------~~-~~~vr~lF~~A 302 (676)
.+..+++.||+|+||||++..+|..+ +..+..+++.-+. + .+ .+ .. ....+..++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 34568889999999999999999865 4555555442111 0 10 00 01 12225566666
Q ss_pred hhCCCeEEEEcCCcc
Q 005815 303 KANSPCLVFIDEIDA 317 (676)
Q Consensus 303 ~~~~P~ILfIDEID~ 317 (676)
+...-.+++||=.-.
T Consensus 177 ~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 177 RLEARDLILVDTAGR 191 (425)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HHCCCCEEEEcCCCc
Confidence 545557999986533
No 374
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.11 E-value=0.067 Score=53.21 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--CCEEEE
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSL 278 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~--~p~i~i 278 (676)
-|.|.||||+||||+++.++..++ .+++..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 388999999999999999999885 466544
No 375
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.96 E-value=0.11 Score=56.69 Aligned_cols=93 Identities=19% Similarity=0.338 Sum_probs=50.7
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhCCCCCCe-EEEEcCCCChHHHHHHHHHHhcCC---CEEEEech-hHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEAGV---PFFSLSGS-EFI 284 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~g-vLL~GPpGTGKT~LArAlA~e~~~---p~i~is~s-~~~ 284 (676)
.++++++.-....+..+++++ . .+.+ ++|.||+|+||||+++++++.... .++...-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~-----------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---K-----------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---T-----------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---H-----------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 467888754444444444331 1 1334 789999999999999999997732 23332211 100
Q ss_pred -H----HHhh-hhhHHHHHHHHHHhhCCCeEEEEcCCc
Q 005815 285 -E----MFVG-VGASRVRDLFNKAKANSPCLVFIDEID 316 (676)
Q Consensus 285 -~----~~~g-~~~~~vr~lF~~A~~~~P~ILfIDEID 316 (676)
. ..+. ...-.....+..+....|.++++.|+.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000 000112334444555678899888863
No 376
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.92 E-value=0.093 Score=49.47 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
..-|++.|++|+|||+|+.++.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999998764
No 377
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.92 E-value=0.17 Score=53.17 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHhcCC-----CEEEEechhH
Q 005815 246 IPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSLSGSEF 283 (676)
Q Consensus 246 ~p~gvLL~GPpGTGKT~LArAlA~e~~~-----p~i~is~s~~ 283 (676)
.|.-+.|.||+|+||||+++.+++.++. .+..++...|
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3445889999999999999999988642 3444554443
No 378
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.90 E-value=0.3 Score=52.20 Aligned_cols=33 Identities=39% Similarity=0.499 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGS 281 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s 281 (676)
++++.+|+|+|||..+-+++... +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 69999999999999988886654 5666666553
No 379
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.83 E-value=0.19 Score=58.14 Aligned_cols=33 Identities=39% Similarity=0.452 Sum_probs=22.6
Q ss_pred CeEEEEcCCCChHHHHHHHHH-Hhc--CCCEEEEec
Q 005815 248 KGVLLVGPPGTGKTLLAKAIA-GEA--GVPFFSLSG 280 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA-~e~--~~p~i~is~ 280 (676)
+.+++.||+|+|||+.+-..+ ..+ +...+++..
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 469999999999999874332 222 455555544
No 380
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.83 E-value=0.044 Score=57.05 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
-+.|.||+|+|||||++.+++.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999765
No 381
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.78 E-value=0.32 Score=48.08 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=15.3
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAK 265 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LAr 265 (676)
+.+++.+|+|+|||...-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 469999999999998743
No 382
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.73 E-value=0.31 Score=56.41 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHH-Hh---cCCCEEEEe
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIA-GE---AGVPFFSLS 279 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA-~e---~~~p~i~is 279 (676)
.+.++++||+|+|||+.+-..+ .. .+...+++.
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~ 82 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVT 82 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEEC
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4679999999999999984433 21 244555554
No 383
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.71 E-value=0.023 Score=58.02 Aligned_cols=30 Identities=37% Similarity=0.616 Sum_probs=24.1
Q ss_pred hCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 242 VGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 242 ~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
....++.| +.|.||+|+|||||++.+++..
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444454 8899999999999999999864
No 384
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.69 E-value=0.07 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+-+.|.||+|+|||+|++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999998864
No 385
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.68 E-value=0.044 Score=53.90 Aligned_cols=22 Identities=50% Similarity=0.596 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-+.|.||+|+|||||++.+++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999975
No 386
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.67 E-value=0.24 Score=57.39 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCChHHHHHH-HHHHh---cCCCEEEEe
Q 005815 247 PKGVLLVGPPGTGKTLLAK-AIAGE---AGVPFFSLS 279 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LAr-AlA~e---~~~p~i~is 279 (676)
.+.++++||+|+|||+.+- ++... -+...+++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 4679999999999998873 33322 244555554
No 387
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.65 E-value=0.081 Score=60.05 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcC----CCEEEEechhH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSLSGSEF 283 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~----~p~i~is~s~~ 283 (676)
.-|+|.|+||+||||+|++++..++ .+++.++...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 3488999999999999999999875 78888886554
No 388
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.57 E-value=0.021 Score=58.78 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=23.7
Q ss_pred CCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 243 GAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 243 g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
...+++| +.|.||+|+|||||++.+++..
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444444 8899999999999999999865
No 389
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.57 E-value=0.21 Score=49.35 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-|+|.|++|+|||+|+.++.+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 49999999999999999998743
No 390
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.45 E-value=0.071 Score=55.78 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||||++.+++.+
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhc
Confidence 38899999999999999999976
No 391
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.36 E-value=0.19 Score=56.75 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=29.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC----CCEEEEechhHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSLSGSEFIE 285 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~----~p~i~is~s~~~~ 285 (676)
.+.|.|++|+||||+++++++.++ ..+..+++..+..
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 488999999999999999999874 3565677766643
No 392
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.34 E-value=0.52 Score=49.42 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=31.0
Q ss_pred CcccccccchhhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHHHHHH
Q 005815 211 VTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG---AKIPKGVLLVGPPGTGKTLLAKAIAG 269 (676)
Q Consensus 211 ~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g---~~~p~gvLL~GPpGTGKT~LArAlA~ 269 (676)
.+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||..+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 3577765555555555431 122232232211 11135699999999999987644443
No 393
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.33 E-value=0.084 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.-+.|.||+|+||||+++.+|+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4458899999999999999999875
No 394
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.26 E-value=0.053 Score=53.57 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|.||+|+|||||++.+++..
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8899999999999999999864
No 395
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.22 E-value=0.27 Score=50.36 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=25.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSG 280 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~ 280 (676)
+.+++.+|+|+|||..+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 469999999999999877766666666666544
No 396
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.13 E-value=0.31 Score=48.67 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCcccccccchhhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHH
Q 005815 210 GVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG---AKIPKGVLLVGPPGTGKTLLAK 265 (676)
Q Consensus 210 ~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g---~~~p~gvLL~GPpGTGKT~LAr 265 (676)
..+|+++.-.+...+.+.+. .+..+..++... ....+.+++.+|+|+|||..+-
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 35688875445444444321 022222222211 1112569999999999998643
No 397
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.12 E-value=0.24 Score=53.38 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-++|.||+|+|||+|++.+++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 39999999999999999998754
No 398
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.08 E-value=0.16 Score=50.04 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=29.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhHHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFV 288 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s~~~~~~~ 288 (676)
-.|-|+|..|||||++++.++. +|+|++. +..+.....
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vid--aD~ia~~l~ 47 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVD--TDLIAHRIT 47 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEE--HHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEE--CcHHHHHHh
Confidence 3589999999999999999988 8887764 444443333
No 399
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.99 E-value=0.41 Score=50.77 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=32.4
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHHHHHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG---AKIPKGVLLVGPPGTGKTLLAKAIA 268 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g---~~~p~gvLL~GPpGTGKT~LArAlA 268 (676)
...+|+++.=.+...+.+... .+..+..++... ....+.+++.+|+|+|||..+-..+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 345788875555555555431 122232222211 1112569999999999997655433
No 400
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.98 E-value=0.42 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=17.1
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 005815 247 PKGVLLVGPPGTGKTLLAKAI 267 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAl 267 (676)
++.+++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 367999999999999865443
No 401
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.51 Score=44.37 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-|+|.|++|+|||+|++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 39999999999999999998754
No 402
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.95 E-value=0.24 Score=49.61 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|+|.|.||+|||+|+.++.+.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 49999999999999999997643
No 403
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.91 E-value=0.68 Score=51.05 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=23.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEec
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSLSG 280 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~--------~~p~i~is~ 280 (676)
+.+++.+|+|+|||..+-..+-+. +..++.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 359999999999998876665443 455565544
No 404
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.88 E-value=0.032 Score=57.85 Aligned_cols=32 Identities=38% Similarity=0.589 Sum_probs=25.6
Q ss_pred hhhCCCCCCe--EEEEcCCCChHHHHHHHHHHhc
Q 005815 240 AAVGAKIPKG--VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 240 ~~~g~~~p~g--vLL~GPpGTGKT~LArAlA~e~ 271 (676)
..+...+++| +.|.||+|+|||||++.+++..
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444555555 8899999999999999999864
No 405
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.86 E-value=0.28 Score=47.63 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.2
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAK 265 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LAr 265 (676)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998643
No 406
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.85 E-value=0.13 Score=56.77 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.++|+||||+|||+|++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 38999999999999999887653
No 407
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.84 E-value=0.093 Score=52.12 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcC
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEAG 272 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~~ 272 (676)
|.-|.|.|++|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34589999999999999999999983
No 408
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.72 E-value=0.048 Score=55.09 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=24.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc-CCCEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA-GVPFF 276 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~-~~p~i 276 (676)
.-|+|.|++|+||||+++.++..+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 448999999999999999999998 44443
No 409
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.63 E-value=0.11 Score=49.49 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLS 279 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is 279 (676)
.+-+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 3458899999999999999998875 45544444
No 410
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.58 E-value=0.56 Score=52.29 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.8
Q ss_pred CCeEEEEcCCCChHHHH
Q 005815 247 PKGVLLVGPPGTGKTLL 263 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~L 263 (676)
.+.+++.+|+|+|||..
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 45699999999999984
No 411
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.56 E-value=0.093 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-++|.|++|+|||+|++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999863
No 412
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.56 E-value=0.32 Score=49.00 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.2
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAK 265 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LAr 265 (676)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 459999999999998643
No 413
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.55 E-value=0.56 Score=52.78 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=30.6
Q ss_pred CCCCcccccccchhhHHHHHHHHHHh--cChhHHhhhCC-----CCCCeEEEEcCCCChHHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFL--QTPEKFAAVGA-----KIPKGVLLVGPPGTGKTLL 263 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l--~~~~~~~~~g~-----~~p~gvLL~GPpGTGKT~L 263 (676)
..+.+|+++........++.+.+..+ ..+..++.... ...+.+++.+|+|+|||..
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34567777763333333444444332 22222222211 1245699999999999984
No 414
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.53 E-value=0.091 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|.|++|+|||+|++.+++..
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999999864
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.50 E-value=0.074 Score=58.72 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-+.|.||+|+|||||+|.+++..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 39999999999999999999864
No 416
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.45 E-value=0.09 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+.|.||+|+|||||++.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999875
No 417
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.41 E-value=0.95 Score=49.70 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=24.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEech
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSLSGS 281 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~--------~~p~i~is~s 281 (676)
+.+++.+|+|+|||..+-..+-+. +..++.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 459999999999998876665443 5556666543
No 418
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.41 E-value=0.1 Score=55.51 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGV 273 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~ 273 (676)
-+.|.||+|+|||||++.+++....
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998654
No 419
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.38 E-value=0.16 Score=50.00 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=25.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLS 279 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is 279 (676)
-|.|.|++|+||||+++.++..+ +.+++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 37889999999999999999876 56665553
No 420
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.36 E-value=0.39 Score=50.37 Aligned_cols=54 Identities=20% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGA---KIPKGVLLVGPPGTGKTLLA 264 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~---~~p~gvLL~GPpGTGKT~LA 264 (676)
...+|+++.=.+...+.+... .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 346788875555555555432 1222222222111 11245999999999999874
No 421
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.30 E-value=0.48 Score=56.87 Aligned_cols=22 Identities=36% Similarity=0.815 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.|.||+|+|||||++.+++..
T Consensus 702 vaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 702 IAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998854
No 422
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.13 E-value=0.59 Score=50.79 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=21.7
Q ss_pred CeEEEEcCCCChHHHHH-HHHHH---hcCCCEEEEec
Q 005815 248 KGVLLVGPPGTGKTLLA-KAIAG---EAGVPFFSLSG 280 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LA-rAlA~---e~~~p~i~is~ 280 (676)
+.+|+.||+|+|||..+ -++.. ..+...+.+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 46999999999999975 44432 22444444443
No 423
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.08 E-value=0.24 Score=49.01 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=35.6
Q ss_pred EEEEcCCCChHHH-HHHHHHH--hcCCCEEEEech-hHH--HH----Hhhhh-----hHHHHHHHHHHhhCCCeEEEEcC
Q 005815 250 VLLVGPPGTGKTL-LAKAIAG--EAGVPFFSLSGS-EFI--EM----FVGVG-----ASRVRDLFNKAKANSPCLVFIDE 314 (676)
Q Consensus 250 vLL~GPpGTGKT~-LArAlA~--e~~~p~i~is~s-~~~--~~----~~g~~-----~~~vr~lF~~A~~~~P~ILfIDE 314 (676)
.+++||.|+|||+ |.+.+-+ +.+..++.+... +-. +. ..|.. .....++++.. .....+|+|||
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~IDE 109 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGIDE 109 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEec
Confidence 6789999999999 5555422 235555544321 110 00 00100 00112233221 23567999999
Q ss_pred Cccc
Q 005815 315 IDAV 318 (676)
Q Consensus 315 ID~l 318 (676)
+..+
T Consensus 110 aQFf 113 (219)
T 3e2i_A 110 VQFF 113 (219)
T ss_dssp GGGS
T ss_pred hhcC
Confidence 9988
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.06 E-value=0.077 Score=49.11 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+|+||+|+|||++..|+.--+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999997543
No 425
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.02 E-value=0.18 Score=55.33 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCC
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVP 274 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p 274 (676)
+.|.||+|+|||+|++.+++.....
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC
Confidence 8899999999999999999987544
No 426
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.02 E-value=0.16 Score=55.59 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=19.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e 270 (676)
+-.++.|+||||||+++..++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 34789999999999999888754
No 427
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.95 E-value=0.34 Score=55.42 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSE 282 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~ 282 (676)
.+++.||||||||+++..++..+ +.+++.+..+.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 234 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence 48999999999999888776653 45666665543
No 428
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.91 E-value=1.1 Score=52.68 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
|..+|+.||.|+|||..+-..+-.. +...+.+..
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5679999999999999876554433 555665544
No 429
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.85 E-value=0.46 Score=53.51 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=30.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGSEFIE 285 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s~~~~ 285 (676)
.-|+|+|++|+|||++++.++..+ |.++..++...+..
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 458899999999999999999876 56777777665543
No 430
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.80 E-value=0.086 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
+.+.|.||+|+|||||++.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999876
No 431
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=90.78 E-value=0.53 Score=51.27 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=30.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEech-hHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGS-EFIE 285 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~~~p~i~is~s-~~~~ 285 (676)
.++|++|+|+|||..+-.++...+.+++.+... .+..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 499999999999999988888888887777655 4443
No 432
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=90.70 E-value=0.43 Score=47.33 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.0
Q ss_pred CeEEEEcCCCChHHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAK 265 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LAr 265 (676)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 459999999999998543
No 433
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.69 E-value=0.14 Score=46.42 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.+++.|++|+|||+|++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.67 E-value=0.19 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCC
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVP 274 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p 274 (676)
+.|.||+|+|||+|++.+++.....
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 8999999999999999999987543
No 435
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.63 E-value=0.17 Score=50.46 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEe
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSLS 279 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~-------~~p~i~is 279 (676)
-|.|.||+|+||||+++.++..+ |.+++...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 38889999999999999999876 66665543
No 436
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.42 E-value=0.41 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.-+.|.|+||+|||+++++++..+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 348899999999999999998764
No 437
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.35 E-value=0.15 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 438
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.34 E-value=0.12 Score=47.64 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
No 439
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.22 E-value=0.16 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 440
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.16 E-value=0.53 Score=46.35 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=14.7
Q ss_pred CeEEEEcCCCChHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLA 264 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LA 264 (676)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 45999999999999863
No 441
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.13 E-value=0.57 Score=49.67 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=29.5
Q ss_pred CCCCcccccccchhhHHHHHHHHHHhcChhHHhhhC---CCCCCeEEEEcCCCChHHHH
Q 005815 208 NTGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVG---AKIPKGVLLVGPPGTGKTLL 263 (676)
Q Consensus 208 ~~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g---~~~p~gvLL~GPpGTGKT~L 263 (676)
.+-.+|+++.=.+...+.|... .+..+..++... ....+.+++.+|+|+|||+.
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHH
Confidence 3445688875445454444321 122332222211 11135699999999999974
No 442
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.11 E-value=0.14 Score=56.05 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSGS 281 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~s 281 (676)
|+.++++|+||+|||+++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5579999999999999999999875 4556666543
No 443
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.10 E-value=0.11 Score=48.85 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 005815 250 VLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e 270 (676)
|+|.|++|+|||+|++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999873
No 444
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.04 E-value=0.19 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
..|+|.|++|+|||+|+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999999999864
No 445
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=90.02 E-value=0.46 Score=53.56 Aligned_cols=45 Identities=24% Similarity=0.177 Sum_probs=30.7
Q ss_pred ccchhhHHHHHHHHHHhcChhHHhhhCCCCCCeEEEEcCCCChHHHHHHHHHHhc
Q 005815 217 AGVDEAKQDFQEIVQFLQTPEKFAAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 217 ~G~~~~k~~L~elv~~l~~~~~~~~~g~~~p~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.-.+.+.+.+..+...+... .+.+++++|+|+|||..+-.++..+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHHH
Confidence 34456666666666554321 2468999999999999987776653
No 446
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.00 E-value=0.16 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|++.|++|+|||+|++++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 447
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.99 E-value=0.23 Score=48.07 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.-++|.|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999875
No 448
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.99 E-value=0.55 Score=49.63 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.6
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 005815 248 KGVLLVGPPGTGKTLLAKA 266 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArA 266 (676)
+.+++.+|+|+|||+.+-.
T Consensus 78 ~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCEEECCCSCSSSHHHHHH
T ss_pred CCEEEECCCCCcccHHHHH
Confidence 4599999999999987433
No 449
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.84 E-value=0.17 Score=45.98 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|++.|++|+|||+|++++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998643
No 450
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=89.81 E-value=0.65 Score=47.84 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCChHHHHH
Q 005815 247 PKGVLLVGPPGTGKTLLA 264 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LA 264 (676)
++.+++++|+|+|||...
T Consensus 131 ~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 467999999999999763
No 451
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.79 E-value=0.17 Score=45.74 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999874
No 452
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.78 E-value=0.25 Score=48.76 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=24.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 276 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~p~i 276 (676)
.-|.|.|++|+||||+++.++..++.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 34889999999999999999999876543
No 453
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.77 E-value=0.18 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|++.|++|+|||+|++++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 49999999999999999998754
No 454
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.73 E-value=0.15 Score=46.81 Aligned_cols=22 Identities=55% Similarity=0.860 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|++.|++|+|||+|++++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4999999999999999999764
No 455
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.61 E-value=0.16 Score=47.45 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|+|.|++|+|||+|++++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999874
No 456
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.60 E-value=0.19 Score=46.36 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 457
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.52 E-value=0.19 Score=45.88 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999865
No 458
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.51 E-value=0.18 Score=45.97 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 459
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.44 E-value=0.19 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|++.|++|+|||+|++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 49999999999999999998743
No 460
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.41 E-value=0.65 Score=46.63 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|+|.|.+|+|||+|+.++.+.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998754
No 461
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.39 E-value=0.16 Score=56.83 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=23.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcCC
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEAGV 273 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~~~ 273 (676)
..|+|.|.+|+||||+++++|..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999874
No 462
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.39 E-value=0.18 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999863
No 463
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.24 E-value=0.2 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 464
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.18 E-value=0.21 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|++.|++|+|||+|++++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4999999999999999999864
No 465
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.17 E-value=0.21 Score=45.37 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 466
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.05 E-value=0.18 Score=46.08 Aligned_cols=20 Identities=50% Similarity=0.845 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 005815 250 VLLVGPPGTGKTLLAKAIAG 269 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~ 269 (676)
|++.|++|+|||+|++.+.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999999974
No 467
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.00 E-value=0.21 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|+|.|++|+|||+|++++.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999874
No 468
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=89.00 E-value=1.5 Score=53.43 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=23.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSLSG 280 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p~i~is~ 280 (676)
+.+|++||.|+|||+.+-..+... +...+++..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 469999999999998876554443 555555544
No 469
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.96 E-value=0.15 Score=48.07 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e 270 (676)
..-|++.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999864
No 470
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.95 E-value=0.22 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 005815 250 VLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e 270 (676)
|++.|++|+|||+|++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999764
No 471
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.91 E-value=1.3 Score=42.41 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|+|.|++|+|||+|++++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 472
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=88.87 E-value=0.77 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCChHHHHH-HHHHH
Q 005815 247 PKGVLLVGPPGTGKTLLA-KAIAG 269 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LA-rAlA~ 269 (676)
++.++++||+|+|||..+ -++..
T Consensus 131 ~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCEEEEECCSSSSHHHHHHHHHHT
T ss_pred CCcEEEEcCCCCchhHHHHHHHHH
Confidence 467999999999999874 34443
No 473
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.79 E-value=0.24 Score=49.66 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=24.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc---CCC-EEEE
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA---GVP-FFSL 278 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~---~~p-~i~i 278 (676)
.-|.|.|++|+||||+++.++..+ +.+ ++.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 448899999999999999999876 555 4433
No 474
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.79 E-value=0.27 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e 270 (676)
.-|++.|++|+|||+|++++.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999763
No 475
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.77 E-value=0.19 Score=46.86 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|+|.|+||+|||+|.+++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999875
No 476
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.73 E-value=0.22 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|++.|++|+|||+|++++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 477
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.73 E-value=0.23 Score=46.50 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|++.|++|+|||+|++++.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999875
No 478
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.70 E-value=0.24 Score=48.88 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=23.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 005815 250 VLLVGPPGTGKTLLAKAIAGEAGVPFFSL 278 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e~~~p~i~i 278 (676)
+.|.||.|+||||+++.+++. +..+...
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 889999999999999999987 4444433
No 479
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.63 E-value=0.14 Score=54.54 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=21.2
Q ss_pred CCCCe-EEEEcCCCChHHHHHHHHHHh
Q 005815 245 KIPKG-VLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 245 ~~p~g-vLL~GPpGTGKT~LArAlA~e 270 (676)
..+.| .+|+||+|+|||++..||+-.
T Consensus 20 ~~~~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 20 EFQSGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444 778999999999999999854
No 480
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.62 E-value=0.24 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|++.|++|+|||+|++++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998753
No 481
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.61 E-value=0.2 Score=45.58 Aligned_cols=21 Identities=52% Similarity=0.947 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 005815 249 GVLLVGPPGTGKTLLAKAIAG 269 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~ 269 (676)
-|+|.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999999965
No 482
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.61 E-value=0.24 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|+.++.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999764
No 483
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.61 E-value=0.24 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-|++.|++|+|||+|++++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 484
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.53 E-value=0.23 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999875
No 485
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.40 E-value=0.26 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e 270 (676)
+|++|.|++|+|||++|.++...
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 47999999999999999999875
No 486
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.37 E-value=0.25 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|++.|++|+|||+|++++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999874
No 487
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.34 E-value=0.43 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 005815 247 PKGVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 247 p~gvLL~GPpGTGKT~LArAlA~e 270 (676)
..++++.||+|+|||++++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999988764
No 488
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.32 E-value=0.25 Score=45.71 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
.|++.|++|+|||+|++++.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4999999999999999999874
No 489
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.31 E-value=0.25 Score=46.50 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|+|.|++|+|||+|++++.+.-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 49999999999999999998743
No 490
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.31 E-value=0.095 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-+.|.|++|+|||+|++++++.
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999764
No 491
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.31 E-value=0.25 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.|++.|++|+|||+|+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 39999999999999999998753
No 492
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.25 E-value=0.24 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|++.|++|+|||+|++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 493
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.25 E-value=0.26 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
-|+|.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 49999999999999999988754
No 494
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=88.23 E-value=1.5 Score=53.01 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=23.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh---cCCCEEEEec
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSLSG 280 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e---~~~p~i~is~ 280 (676)
+.+++.+|.|+|||..+-..... -+...+++..
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~P 137 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 137 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECC
Confidence 46999999999999987543332 2556666654
No 495
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.16 E-value=0.25 Score=46.00 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|++.|++|+|||+|++++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 496
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.12 E-value=0.44 Score=46.12 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 005815 248 KGVLLVGPPGTGKTLLAKAIAGEA 271 (676)
Q Consensus 248 ~gvLL~GPpGTGKT~LArAlA~e~ 271 (676)
.-++|.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999875
No 497
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.92 E-value=0.25 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e 270 (676)
-|++.|++|+|||+|++++.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999753
No 498
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=87.92 E-value=1.1 Score=48.37 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=29.0
Q ss_pred CCCcccccccchhhHHHHHHHHHHhcChhHHhhhCC---CCCCeEEEEcCCCChHHHH
Q 005815 209 TGVTFDDVAGVDEAKQDFQEIVQFLQTPEKFAAVGA---KIPKGVLLVGPPGTGKTLL 263 (676)
Q Consensus 209 ~~~~f~dv~G~~~~k~~L~elv~~l~~~~~~~~~g~---~~p~gvLL~GPpGTGKT~L 263 (676)
+-.+|+++.-.+...+.|.+. .+..|..++.... ...+.+++.+|+|+|||..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 345788874444444444321 1333333322211 1235699999999999984
No 499
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.90 E-value=0.26 Score=53.78 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 005815 250 VLLVGPPGTGKTLLAKAIAGE 270 (676)
Q Consensus 250 vLL~GPpGTGKT~LArAlA~e 270 (676)
+.|.||+|+|||||++++++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999986
No 500
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=87.80 E-value=0.77 Score=54.11 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=25.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechh
Q 005815 249 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSLSGSE 282 (676)
Q Consensus 249 gvLL~GPpGTGKT~LArAlA~e~----~~p~i~is~s~ 282 (676)
-+++.||||||||+++..+...+ +..++.+..+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn 414 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence 47999999999999877765432 56666666544
Done!