Query 005816
Match_columns 676
No_of_seqs 225 out of 1054
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 14:10:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 1E-119 3E-124 1060.7 68.5 655 19-676 2-656 (900)
2 KOG1041 Translation initiation 100.0 1.9E-89 4.2E-94 798.0 53.6 574 48-676 42-635 (876)
3 KOG1042 Germ-line stem cell di 100.0 2.2E-81 4.7E-86 665.4 34.2 520 56-676 87-631 (845)
4 cd04658 Piwi_piwi-like_Euk Piw 100.0 5.2E-41 1.1E-45 372.4 24.6 242 417-676 3-254 (448)
5 cd04657 Piwi_ago-like Piwi_ago 100.0 4.3E-41 9.4E-46 369.6 22.3 214 448-676 1-227 (426)
6 cd02826 Piwi-like Piwi-like: P 100.0 4.5E-33 9.8E-38 303.5 20.5 191 461-676 2-200 (393)
7 PF02170 PAZ: PAZ domain; Int 99.9 4.3E-24 9.2E-29 198.4 10.7 130 286-427 1-135 (135)
8 cd02846 PAZ_argonaute_like PAZ 99.8 9.4E-20 2E-24 164.2 11.7 107 286-403 2-114 (114)
9 cd02825 PAZ PAZ domain, named 99.8 8.6E-20 1.9E-24 164.2 10.3 106 285-403 1-115 (115)
10 cd02845 PAZ_piwi_like PAZ doma 99.8 5.2E-20 1.1E-24 165.2 8.1 107 286-405 2-116 (117)
11 PF02171 Piwi: Piwi domain; I 99.7 3.5E-18 7.5E-23 180.7 7.6 98 573-676 1-104 (302)
12 cd04659 Piwi_piwi-like_ProArk 99.6 1.3E-15 2.7E-20 167.4 9.6 111 555-675 95-216 (404)
13 PF08699 DUF1785: Domain of un 99.6 2.9E-15 6.2E-20 113.7 4.1 51 234-285 2-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.5 2E-14 4.4E-19 131.8 6.1 84 309-404 27-133 (135)
15 cd02843 PAZ_dicer_like PAZ dom 98.7 1.2E-08 2.7E-13 90.4 5.4 65 310-388 38-106 (122)
16 COG1431 Argonaute homolog, imp 92.8 0.27 5.8E-06 54.7 7.1 170 469-662 307-488 (685)
17 PF00763 THF_DHG_CYH: Tetrahyd 56.9 19 0.00041 32.3 4.7 70 555-625 15-85 (117)
18 PRK14185 bifunctional 5,10-met 51.7 34 0.00073 35.9 6.2 75 556-630 17-94 (293)
19 PRK14171 bifunctional 5,10-met 47.7 55 0.0012 34.3 7.0 72 558-629 20-94 (288)
20 PRK14184 bifunctional 5,10-met 47.7 50 0.0011 34.6 6.7 76 556-631 17-95 (286)
21 PRK14187 bifunctional 5,10-met 45.8 61 0.0013 34.1 7.0 74 557-630 19-95 (294)
22 PRK10792 bifunctional 5,10-met 44.9 52 0.0011 34.5 6.3 76 556-631 19-97 (285)
23 PRK14186 bifunctional 5,10-met 44.9 57 0.0012 34.4 6.6 75 557-631 19-96 (297)
24 PRK14176 bifunctional 5,10-met 44.5 71 0.0015 33.5 7.2 73 558-630 26-101 (287)
25 PRK14192 bifunctional 5,10-met 44.5 65 0.0014 33.8 7.0 78 557-634 20-100 (283)
26 PRK14183 bifunctional 5,10-met 43.8 60 0.0013 33.9 6.5 74 557-630 18-94 (281)
27 PRK14177 bifunctional 5,10-met 43.4 65 0.0014 33.7 6.7 76 556-631 19-97 (284)
28 PLN02897 tetrahydrofolate dehy 43.3 60 0.0013 34.9 6.5 66 560-625 76-142 (345)
29 KOG1924 RhoA GTPase effector D 42.8 43 0.00093 39.2 5.6 12 216-227 732-743 (1102)
30 PRK14188 bifunctional 5,10-met 42.5 68 0.0015 33.8 6.8 74 556-629 18-94 (296)
31 PLN02516 methylenetetrahydrofo 42.5 72 0.0016 33.6 6.9 67 560-626 29-96 (299)
32 PRK14174 bifunctional 5,10-met 41.6 68 0.0015 33.8 6.6 69 557-625 18-87 (295)
33 PLN02616 tetrahydrofolate dehy 41.2 73 0.0016 34.4 6.8 73 558-630 91-166 (364)
34 KOG1924 RhoA GTPase effector D 40.5 48 0.001 38.8 5.5 26 50-76 624-649 (1102)
35 PRK14168 bifunctional 5,10-met 40.3 69 0.0015 33.8 6.4 70 556-625 19-89 (297)
36 PRK14179 bifunctional 5,10-met 40.1 78 0.0017 33.1 6.7 73 557-629 19-94 (284)
37 PRK14180 bifunctional 5,10-met 39.9 73 0.0016 33.3 6.5 69 557-625 18-87 (282)
38 PRK14169 bifunctional 5,10-met 39.4 77 0.0017 33.2 6.5 74 556-630 17-93 (282)
39 PRK14172 bifunctional 5,10-met 38.2 82 0.0018 32.9 6.5 74 556-629 18-94 (278)
40 PRK14190 bifunctional 5,10-met 38.0 78 0.0017 33.1 6.3 72 557-629 20-94 (284)
41 PRK14166 bifunctional 5,10-met 38.0 77 0.0017 33.1 6.3 72 558-630 19-93 (282)
42 PRK14193 bifunctional 5,10-met 36.5 85 0.0018 32.9 6.3 70 560-630 23-95 (284)
43 PRK14191 bifunctional 5,10-met 36.4 94 0.002 32.6 6.6 74 557-630 18-94 (285)
44 PRK14194 bifunctional 5,10-met 36.0 92 0.002 32.9 6.5 71 558-629 22-95 (301)
45 PRK14170 bifunctional 5,10-met 31.8 1.1E+02 0.0024 32.0 6.2 70 559-629 21-93 (284)
46 PRK14167 bifunctional 5,10-met 31.2 1.2E+02 0.0025 32.1 6.3 70 559-629 21-93 (297)
47 KOG2488 Acetyltransferase (GNA 30.1 76 0.0016 31.0 4.3 45 66-114 105-149 (202)
48 PRK14173 bifunctional 5,10-met 29.9 1.3E+02 0.0028 31.6 6.3 63 569-631 28-93 (287)
49 PRK14182 bifunctional 5,10-met 29.4 1.3E+02 0.0027 31.6 6.2 72 558-630 19-93 (282)
50 PRK14189 bifunctional 5,10-met 28.6 1.6E+02 0.0034 31.0 6.7 71 558-629 21-94 (285)
51 COG0190 FolD 5,10-methylene-te 28.3 1.3E+02 0.0028 31.4 6.0 75 557-631 17-94 (283)
52 PRK14175 bifunctional 5,10-met 27.4 1.4E+02 0.003 31.3 6.1 60 570-629 32-94 (286)
53 PRK14181 bifunctional 5,10-met 27.1 1.5E+02 0.0033 31.0 6.4 56 569-624 25-81 (287)
54 PRK14178 bifunctional 5,10-met 25.1 1.9E+02 0.0042 30.2 6.7 57 569-625 25-82 (279)
55 COG5178 PRP8 U5 snRNP spliceos 24.8 64 0.0014 39.5 3.3 32 15-58 2-33 (2365)
56 KOG4327 mRNA splicing protein 21.1 58 0.0012 31.7 1.7 20 18-38 166-185 (218)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=1.2e-119 Score=1060.75 Aligned_cols=655 Identities=82% Similarity=1.318 Sum_probs=571.6
Q ss_pred CCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEEeCCCCCCC
Q 005816 19 DSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVD 98 (676)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rp~~Gt~G~~i~l~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~~~ 98 (676)
+++||++|.+|+++++...+..+ ....+.+.+++||||||.|++|+|+||||+|.+..++..+|||+|+|+++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~ 80 (900)
T PLN03202 2 DALPPPPPVVPPNVVPIKLEPTK-KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVD 80 (900)
T ss_pred CCCCCCCCCCCcccccccccccc-cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCccc
Confidence 57899999999999988876322 22456668889999999999999999999999865678899999999876556777
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCCeeeeCCCceEecCCCCCCceEEEEEecccccccCCCCCCCCCCCCCCCCccccccC
Q 005816 99 GKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRR 178 (676)
Q Consensus 99 ~k~~~r~i~~~~~~~~~~~~~~~~~~yDG~~~l~s~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 178 (676)
+++++++|+.++++++..++.+..+||||+++|||+++||.+..++.|.++++...++..+|+|++++++++++.+|.+.
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (900)
T PLN03202 81 GKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRR 160 (900)
T ss_pred chhhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccc
Confidence 78889999999998876567677899999999999999998767888888754333323456676677777777666666
Q ss_pred CCCCceEEEEEEeeeeechHHHHHHHcCCCCcchHHHHHHHHHHHhcccccccceeccccccCCCCCCcccCCCcEEEee
Q 005816 179 PYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCR 258 (676)
Q Consensus 179 ~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~vg~~ff~~~~~~~~~l~~g~e~~~ 258 (676)
..+.+.|+|+|+++++|++++|.+||.|....+..+++|+||+|||+.++..++..+||+||..+.....++++|+|+|+
T Consensus 161 ~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~ 240 (900)
T PLN03202 161 PYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCR 240 (900)
T ss_pred cCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEee
Confidence 77889999999999999999999999998777788999999999999998777888999999876555567899999999
Q ss_pred cceEEEEecCCeeEEeeecceeeeecCCcHHHHHHHhcCCCCCCchhHHHHHHHhcceEEEEEecCceEEEeccCccccc
Q 005816 259 GFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCK 338 (676)
Q Consensus 259 Gf~~Svr~~~~~l~LniDvs~~~F~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~~r~~kI~gi~~~~~~ 338 (676)
||++|||+++++++||||+++++|+++++|+|+|.++.+.++....+|.++.++|+|++|.++|++++|+|.||++.+++
T Consensus 241 G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~ 320 (900)
T PLN03202 241 GFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCK 320 (900)
T ss_pred eeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCc
Confidence 99999999999999999999999999999999999876655544457889999999999999999999999999999999
Q ss_pred cceeecccCCCCCCCCCccceeeeHHHHHHHhcCcccccCCCCceEEcCCCCCCceecccceeecCCCccCCCCCHHHHH
Q 005816 339 EQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRA 418 (676)
Q Consensus 339 ~~~F~~~~~~~~~~~~~~~~~~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~~~~~~ylP~Elc~i~~~Qr~~~kLs~~q~~ 418 (676)
+.+|.++++++ ...+..+++|||+|||+++|||+|+|++++|||++|+.++++|||||||.|+|+|+++++|++.|++
T Consensus 321 ~~~F~~~~~~~--~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~ 398 (900)
T PLN03202 321 EQTFSLKQRNG--NGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRS 398 (900)
T ss_pred ceEEEcccCCc--ccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHH
Confidence 99998765321 0012223589999999999999999933999999999889999999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcCCCCchhhcccCceecCceeEeeeeecCCCeeecCCCcccCCCCCccccCCceecC
Q 005816 419 SLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQ 498 (676)
Q Consensus 419 ~mi~~~~~~P~~R~~~i~~~~~~l~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~~~p~~g~Wn~~~~kf~~ 498 (676)
+|+++|+.+|.+|.+.|.++++.++++.+++|++|||+|+++|++|+||+|++|+|.||++..+.|++|+||+++++|++
T Consensus 399 ~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~ 478 (900)
T PLN03202 399 SLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVE 478 (900)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecC
Confidence 99999999999999999999999999889999999999999999999999999999999877677889999999999999
Q ss_pred CCccceEEEEEeCCcccHHHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhhCCCCCcEEEEEc
Q 005816 499 PTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLL 578 (676)
Q Consensus 499 p~~i~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvIl 578 (676)
|+.+++|+|++|.+++++++|++.|.+.|+.+||.+..|..+...++++......++++.+++++++.+...++|+||||
T Consensus 479 ~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIl 558 (900)
T PLN03202 479 PTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCIL 558 (900)
T ss_pred CCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 99999999999987678999999999999999999998865543333333334456799999999988766799999999
Q ss_pred CCCCCCCchhhhhhhcccccCceeeEeecccCcHHHHHHHHHHHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccC
Q 005816 579 PERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSH 658 (676)
Q Consensus 579 p~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k~~~q~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsH 658 (676)
|++++.++|+.||++||+++||+||||..++.++||++|||||||+||||+||.|..+.+..+|++.+.+|||||+||+|
T Consensus 559 p~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtH 638 (900)
T PLN03202 559 PERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSH 638 (900)
T ss_pred cCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeec
Confidence 97457899999999999999999999988888999999999999999999999998665556888888899999999999
Q ss_pred CCCCCCCCCcEEEEEeeC
Q 005816 659 GSPGHSDIPSIAAVISFH 676 (676)
Q Consensus 659 p~~g~~~~pSIaavVaS~ 676 (676)
|+||+.+.|||||||||+
T Consensus 639 p~~g~~~~pSiaa~VaS~ 656 (900)
T PLN03202 639 GSPGQSDVPSIAAVVSSR 656 (900)
T ss_pred CCCCCCCCCceEEEEecc
Confidence 999865679999999995
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-89 Score=798.04 Aligned_cols=574 Identities=39% Similarity=0.597 Sum_probs=488.8
Q ss_pred ccccCCCCCCCCCCCEEEEEeeEEEEEecCCCce-EEEEEEEEEeCCCCCCCCCcchH-HHHHHHHHHH-hhhcCCCCee
Q 005816 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGH-FYHYSVSVSYEDGRPVDGKGAGR-KVIDRVQETY-NAELDGKDFA 124 (676)
Q Consensus 48 ~~~~~~Rp~~Gt~G~~i~l~tN~f~v~~~~~~~~-~y~Y~V~i~~~~~~~~~~k~~~r-~i~~~~~~~~-~~~~~~~~~~ 124 (676)
...++.|||.|+.|+.+.|.+|||.++++.++.. ++||+|.+.+ +..++.+++ .+++.+.... ...+.+..++
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFN----EHGRRKVQCLRFFLDKVKNPELFELKSGGPA 117 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecC----CCCchHHHHHHHHHHHHhccccccccCCccc
Confidence 4678889999999999999999999988766665 9999999954 344455553 5555444333 2335666777
Q ss_pred eeCCCceEecCCCCC--CceEEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeechHHHHH
Q 005816 125 YDGEKSLFTVGPLPR--NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIAN 202 (676)
Q Consensus 125 yDG~~~l~s~~~L~~--~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~ 202 (676)
|||+++|||..+|+. ....|.+..+.. ...|+++|++++.+.+..+..
T Consensus 118 YDg~~~lyt~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ik~~~~~~~~~~~~ 167 (876)
T KOG1041|consen 118 YDGQKTLYTKLELPEGVVTLDFDVISPKE------------------------------WKKFKVSIKKVSEVVLTKLNG 167 (876)
T ss_pred ccCCceeEeccccccccceEEEEecCCCC------------------------------CcceEEEEEecccccccCccc
Confidence 999999999888883 333444443211 112999999999999999999
Q ss_pred HHcCCCCcchHHHHHHHHHHHhcccccccceeccccccCCCCCCcccCCCcEEEeecceEEEEecCCeeEEeeecceeee
Q 005816 203 ALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 282 (676)
Q Consensus 203 ~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~vg~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDvs~~~F 282 (676)
++.+.......+++|+|++++++.+...++..+|++||.........+++|.++|.||++|+|+++++++||+|+++++|
T Consensus 168 ~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F 247 (876)
T KOG1041|consen 168 FIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAF 247 (876)
T ss_pred cccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeee
Confidence 98888777789999999999999999888999999999974333345899999999999999999999999999999999
Q ss_pred ecCCcHHHHHHHhcCCCC-CCchhHH-HHHHHhcceEEEEEec--CceEEEeccCccccccceeecccCCCCCCCCCccc
Q 005816 283 IQPGPVVDFLIANQNVRD-PFSIDWA-KAKRTLKNLRIKTITS--NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (676)
Q Consensus 283 ~~~~~v~d~l~~~~~~~~-~~~~~~~-~~~~~Lkgl~V~t~~~--~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~ 358 (676)
|++.+|++|+++..+.++ +...+|. .++++||||+|.++|+ +|.|+|.+++..++.+++|++++.+ +
T Consensus 248 ~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~---------~ 318 (876)
T KOG1041|consen 248 YKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKK---------G 318 (876)
T ss_pred ecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCC---------c
Confidence 999999999998776542 2222332 3899999999999994 5889999999999999999987531 3
Q ss_pred eeeeHHHHHHHhcCcccccCCCCceEEcCCCCCCceecccceeecCCCccCC-CCCHHHHHHHHHHHhcChHHHHHHHHH
Q 005816 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTK-ALTNLQRASLVEKSRQKPQERMSVLSN 437 (676)
Q Consensus 359 ~~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~~~~~~ylP~Elc~i~~~Qr~~~-kLs~~q~~~mi~~~~~~P~~R~~~i~~ 437 (676)
.++||+|||+++||++|+| |+||||++|..++.+|||||||.|++||||++ +|++.|++.|++.+++.|++|++.|.+
T Consensus 319 ~~~tV~~Yf~~ky~~~Lky-p~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~ 397 (876)
T KOG1041|consen 319 REITVADYFLEKYNITLKY-PDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKK 397 (876)
T ss_pred eEEeHHHHHHHhcCccccC-CCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 6999999999999999999 99999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhcCCCCchhhcccCceecCceeEeeeeecCCCeeecCCC-cccCCCCCccccCCceecCCCccceEEEEEeCCcccH
Q 005816 438 ALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDI 516 (676)
Q Consensus 438 ~~~~l~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~-~~~~p~~g~Wn~~~~kf~~p~~i~~W~vv~~~~~~~~ 516 (676)
+++..+++.+++|++|||.|.++|+.|+||+|+||.|.|+++ ....|.+|.|++++++|+.|+.+..|+|++|...++.
T Consensus 398 ~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~ 477 (876)
T KOG1041|consen 398 VLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETL 477 (876)
T ss_pred HHHHhccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccc
Confidence 999998888999999999999999999999999999999988 3467889999999999999999999999999877533
Q ss_pred --HHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhhCC--CCCcEEEEEcCCCCCCCchhhhhh
Q 005816 517 --RSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLP--GAPQFLLCLLPERKNSDLYGPWKR 592 (676)
Q Consensus 517 --~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vlvIlp~~k~~~~Y~~iK~ 592 (676)
+.|+++|++.|+..||.|..| .. . +..+.+++.++..++...+ ..+++++||+++ ++.++|+.||+
T Consensus 478 ~~~~f~~~L~~~c~~~Gm~i~~~-~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~-k~~~vy~~lK~ 547 (876)
T KOG1041|consen 478 RQKQFVDELIKICKDKGMEIKRP-RK-W-------APTEESLEDMITEKSSMEKAAAGVQLVFIILPE-KNPDVHDELKY 547 (876)
T ss_pred cHHHHHHHHHHHHHHcCcccccc-cc-c-------CcccchhHHHHHHHHhhhccCCCceEEEEEECC-CCcchhHHHHH
Confidence 699999999999999999763 21 1 1122577788887776653 568999999999 88999999999
Q ss_pred hcccccCceeeEeecc---cCcHHHHHHHHHHHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCCCCC--CC
Q 005816 593 KNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD--IP 667 (676)
Q Consensus 593 ~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g~~~--~p 667 (676)
+++...||+|||++.. +..+||++||+||||+||||+|+.+..+.+..+| ....||||||+|||||++|... .|
T Consensus 548 ~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~P 626 (876)
T KOG1041|consen 548 IEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNP 626 (876)
T ss_pred HHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCc
Confidence 9999999999999985 4679999999999999999999999876544444 4468999999999999998765 59
Q ss_pred cEEEEEeeC
Q 005816 668 SIAAVISFH 676 (676)
Q Consensus 668 SIaavVaS~ 676 (676)
||||||||+
T Consensus 627 Siagvv~s~ 635 (876)
T KOG1041|consen 627 SIVGVVYNL 635 (876)
T ss_pred cEEEEEecc
Confidence 999999985
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.2e-81 Score=665.40 Aligned_cols=520 Identities=23% Similarity=0.379 Sum_probs=448.6
Q ss_pred CCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEEeCCCCCCCCCcchHHHHHHHHHHHhhhcCCCCeeeeCCCceEecC
Q 005816 56 GLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVG 135 (676)
Q Consensus 56 ~~Gt~G~~i~l~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~~~~~~~~~~~~~~~~yDG~~~l~s~~ 135 (676)
..|+.|.+++|.||||++.. .+++.+|||+|+| .|.++++.++++++..+ +++.|+.++|||. .||..+
T Consensus 87 KtGssG~pv~l~tN~f~l~t-~p~w~iyqYhVef----~P~ves~rlR~~~L~~h-----~~lig~~~~FDG~-iLfl~~ 155 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMT-RPDWSIYQYHVEF----EPDVESRRLREALLYNH-----TDLIGKGYAFDGT-ILFLKE 155 (845)
T ss_pred ccCCCCceEEEEeceeeecc-CCCcEEEEEEEee----ccccccHHHHHHHHHHh-----Hhhhccceeecce-eehhhH
Confidence 35999999999999999875 4799999999999 56788998888888754 3466889999999 999999
Q ss_pred CCCCCceEEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeechHHHHHHHcCCCCcchHHH
Q 005816 136 PLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEA 215 (676)
Q Consensus 136 ~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~ 215 (676)
++..+..+. .+. +..+..++|+|++++.++. .+.+.
T Consensus 156 k~eq~~tel-------~~k------------------------s~~ge~i~I~ik~~~~~~~-------------t~p~~ 191 (845)
T KOG1042|consen 156 KFEQKQTEL-------VSK------------------------SRDGELIKITIKLTNELPS-------------TDPQC 191 (845)
T ss_pred HHhhhhhee-------ecc------------------------cCCCceEEEEEEEeccccC-------------CChhH
Confidence 987654221 110 1257799999999999987 35789
Q ss_pred HHHHHHHHhcccccccceeccccccCCCCCCcccCCCcEEEeecceEEEEecCCeeEEeeecceeeeecCCcHHHHHHHh
Q 005816 216 FRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIAN 295 (676)
Q Consensus 216 iq~Lniilr~~~~~~~~~~vg~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~~~v~d~l~~~ 295 (676)
+|++|+|||..+...+..++||+||++.++..++ ...+++|+||.+|||..+..++|+.|++|++ .|..||+|+|.++
T Consensus 192 iqv~NlI~RR~~k~L~L~qigRnyynp~~~i~ip-~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~ 269 (845)
T KOG1042|consen 192 IQVFNLILRRSMKGLNLTQIGRNYYDPRAKIEIP-EFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSC 269 (845)
T ss_pred HHHHHHHHHHHHhhccHHHhhhccCCCCcccccc-cccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHH
Confidence 9999999999998888899999999998753333 5789999999999999999999999999999 7999999999887
Q ss_pred cCCCCCCchhHHHHHHHhcceEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCccc
Q 005816 296 QNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDL 375 (676)
Q Consensus 296 ~~~~~~~~~~~~~~~~~Lkgl~V~t~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~~Yf~~~Y~i~L 375 (676)
++ ++. ....++++.+-|+.|.|.||||+|+|+++++...+.++|..++ .+||+.|||+++|||+|
T Consensus 270 ~~--~~~-~~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~d------------geIs~veYyk~qYni~I 334 (845)
T KOG1042|consen 270 QH--NTQ-RFQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDD------------GEISFVEYYKKQYNIEI 334 (845)
T ss_pred hh--CHH-HHHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecC------------ceeeHhHHHHHhcCeEE
Confidence 64 222 1356899999999999999999999999999999999997654 38999999999999999
Q ss_pred ccCCCCceEEcCC--------CCCCceecccceeecCCCccCCCCCHHHHH------HHHHHHhcChHHHHHHHHHHHHh
Q 005816 376 RYSGDLPCINVGK--------PKRPTYIPLELCELVSLQRYTKALTNLQRA------SLVEKSRQKPQERMSVLSNALKL 441 (676)
Q Consensus 376 ~~~p~lPll~vg~--------~~~~~ylP~Elc~i~~~Qr~~~kLs~~q~~------~mi~~~~~~P~~R~~~i~~~~~~ 441 (676)
++ -+||+|.... ..+..++.||||+++| |++++|+ +|.++++..|++|.+.+..+...
T Consensus 335 ~d-l~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TG-------Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~ 406 (845)
T KOG1042|consen 335 TD-LNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTG-------LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDR 406 (845)
T ss_pred ee-CCcceEeccCcccCCCCCCccceeeehhhhhccC-------CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99 9999997632 2346899999999999 7998887 68999999999999999999988
Q ss_pred cCCC--CchhhcccCceecCceeEeeeeecCCCeeecCCCcc-cCCCCCccc--cCCceecCCCccceEEEEEeCCcc-c
Q 005816 442 SKYD--NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED-FSPRNGRWN--FNNKKLVQPTKIERWAVVNFSARC-D 515 (676)
Q Consensus 442 l~~~--~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~-~~p~~g~Wn--~~~~kf~~p~~i~~W~vv~~~~~~-~ 515 (676)
+.-+ .-..|+.|||+++.+.++|+||+|++.+|.+|+++. ..+..+.|. ++.-.++....+++|+|++..+.. .
T Consensus 407 l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~~ 486 (845)
T KOG1042|consen 407 LQKNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNSE 486 (845)
T ss_pred HhcChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHHH
Confidence 7654 346799999999999999999999999999999753 335668997 777788888899999999876554 7
Q ss_pred HHHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcc
Q 005816 516 IRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNL 595 (676)
Q Consensus 516 ~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~ 595 (676)
++.|+++|.+.+..+||+|..|..+.+.+ ++.+.|++++++....++++|+||+|+ .+.+.|+.||++++
T Consensus 487 a~~fi~~l~r~a~~mgm~i~~P~~v~i~d---------dr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~c 556 (845)
T KOG1042|consen 487 AQEFINMLRRVASSMGMQIREPICVEIKD---------DRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYLC 556 (845)
T ss_pred HHHHHHHHHHhccccceecCCceEEEeCC---------CChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhhee
Confidence 99999999999999999999998876643 556788999999888889999999999 88999999999999
Q ss_pred cccCceeeEeecccCc-----HHHHHHHHHHHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCCCCCCCcEE
Q 005816 596 ADFGIVTQCMAPMRVN-----DQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIA 670 (676)
Q Consensus 596 ~~~GI~TQci~~~k~~-----~q~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g~~~~pSIa 670 (676)
++..||||||..+... ..++++|+|||||||||..|.|+ ||+ +.+||||+||+|.+.. ...|++
T Consensus 557 vd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvg 625 (845)
T KOG1042|consen 557 VDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVG 625 (845)
T ss_pred ccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceEE
Confidence 9999999999986532 34689999999999999999995 786 7899999999998764 478999
Q ss_pred EEEeeC
Q 005816 671 AVISFH 676 (676)
Q Consensus 671 avVaS~ 676 (676)
|+|||+
T Consensus 626 a~VAs~ 631 (845)
T KOG1042|consen 626 AFVASM 631 (845)
T ss_pred EEEEee
Confidence 999996
No 4
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=5.2e-41 Score=372.41 Aligned_cols=242 Identities=22% Similarity=0.394 Sum_probs=207.4
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHhcCCCCc--hhhcccCceecCceeEeeeeecCCCeeecCCCcccCCCCCccccC--
Q 005816 417 RASLVEKSRQKPQERMSVLSNALKLSKYDNE--PMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFN-- 492 (676)
Q Consensus 417 ~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~--~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~~~p~~g~Wn~~-- 492 (676)
..+|+++++.+|.+|++.|.++++.++.+.+ ++|++|||+|++++++|+||+|+||.|.|+++....+.+|+|++.
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~w~~~~~ 82 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANSNADWKREIR 82 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCCCCCcchhhc
Confidence 4689999999999999999999999887665 689999999999999999999999999999876556778999864
Q ss_pred CceecCCCccceEEEEEeCCcc-cHHHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhhCCCCC
Q 005816 493 NKKLVQPTKIERWAVVNFSARC-DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAP 571 (676)
Q Consensus 493 ~~kf~~p~~i~~W~vv~~~~~~-~~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 571 (676)
+..|+.+..+++|+++++..+. .++.|++.|.+.++.+||.+.+|..+...+ .+.+.+++.+++....++
T Consensus 83 ~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~---------~~~~~~~~~l~~~~~~~~ 153 (448)
T cd04658 83 NQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKD---------DRIETYIRALKDAFRSDP 153 (448)
T ss_pred CCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCC---------CCHHHHHHHHHHhhcCCC
Confidence 5678999999999999986443 799999999999999999999887654322 235567777777665679
Q ss_pred cEEEEEcCCCCCCCchhhhhhhcccccCceeeEeeccc-----CcHHHHHHHHHHHhhccCCceeeccccCCCCCCCcCC
Q 005816 572 QFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR-----VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSK 646 (676)
Q Consensus 572 ~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k-----~~~q~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~ 646 (676)
+|+|||+|+ ++.++|+.||++|+.+.||+||||..++ ...++++||+||||+||||+||.++.. ....
T Consensus 154 ~lvvvilp~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~ 226 (448)
T cd04658 154 QLVVIILPG-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFIL 226 (448)
T ss_pred cEEEEEECC-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCC
Confidence 999999998 7689999999999999999999999853 245789999999999999999999742 1235
Q ss_pred CCeEEEeeeccCCCCCCCCCCcEEEEEeeC
Q 005816 647 VPTIILGMDVSHGSPGHSDIPSIAAVISFH 676 (676)
Q Consensus 647 ~~tMIiG~DVsHp~~g~~~~pSIaavVaS~ 676 (676)
.+|||||+||+||+++ ..|||||+|||+
T Consensus 227 ~~tmiiGidv~h~~~~--~~~Si~a~vas~ 254 (448)
T cd04658 227 KNTMIVGIDVYHDTIT--KKKSVVGFVASL 254 (448)
T ss_pred CCeEEEEEeeecCCCC--CCCcEEEEEEEc
Confidence 7899999999999874 469999999994
No 5
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=4.3e-41 Score=369.62 Aligned_cols=214 Identities=43% Similarity=0.747 Sum_probs=184.2
Q ss_pred hhhcccCceecCceeEeeeeecCCCeeecCCC-cccCCCCCccccCCceecCCCccceEEEEEeCCc-------ccHHHH
Q 005816 448 PMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-------CDIRSL 519 (676)
Q Consensus 448 ~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~-~~~~p~~g~Wn~~~~kf~~p~~i~~W~vv~~~~~-------~~~~~f 519 (676)
++|++|||+|+++|++|+||+|+||+|.|+++ ....+.+|+|++++++|++++.+++|+++++..+ .+++.|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 46899999999999999999999999999954 4556789999999999999999999999998753 258999
Q ss_pred HHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccC
Q 005816 520 VRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFG 599 (676)
Q Consensus 520 ~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~G 599 (676)
++.|.+.|+.+||.+. ..+. ...++++.+++.+++.....++|+|||+|+ ++.++|+.||++||.+.|
T Consensus 81 ~~~l~~~~~~~g~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 81 VDQLVKTVIGAGINIT--TAIA---------SVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHhcCCccc--cccc---------ccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCC
Confidence 9999999999999986 1111 113567888888888765578999999998 778999999999999999
Q ss_pred ceeeEeeccc----CcHHHHHHHHHHHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCCC-CCCCcEEEEEe
Q 005816 600 IVTQCMAPMR----VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGH-SDIPSIAAVIS 674 (676)
Q Consensus 600 I~TQci~~~k----~~~q~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g~-~~~pSIaavVa 674 (676)
|+||||..++ .++||+.||+||||+||||+||.++... .+++...+|||||+||+||++++ ...||||||||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999854 5799999999999999999999997532 23345689999999999999985 45899999999
Q ss_pred eC
Q 005816 675 FH 676 (676)
Q Consensus 675 S~ 676 (676)
|+
T Consensus 226 s~ 227 (426)
T cd04657 226 SV 227 (426)
T ss_pred ec
Confidence 95
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=4.5e-33 Score=303.53 Aligned_cols=191 Identities=27% Similarity=0.382 Sum_probs=155.4
Q ss_pred eeEeeeeecCCCeeecCCCcccCCCCCccccCCceecCCCcc-ceEEEEEeCCcccHHHHHHHHHHHHhhcCCcCCC-Cc
Q 005816 461 FAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKI-ERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQ-PF 538 (676)
Q Consensus 461 ~~~V~gRvL~~P~i~~g~~~~~~p~~g~Wn~~~~kf~~p~~i-~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~-p~ 538 (676)
+++|+||+|++|.|.|+++ |++++++|.+|+.+ ++|+++++.. ...++|++.|.+.++++||.+.+ |.
T Consensus 2 ~~~v~grvL~~p~i~~~~~---------w~~~~~~f~~~~~~~~~W~vi~~~~-~~~~~f~~~l~~~~~~~G~~~~~~~~ 71 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK---------FLRNIGPFEKPAKITNPVAVIAFRN-EEVDDLVKRLADACRQLGMKIKEIPI 71 (393)
T ss_pred ceEEeeEecCCCceEecCC---------ccccCCeeCCCCEeCCeEEEEEccc-HHHHHHHHHHHHHHHhCCCccCCCCC
Confidence 6899999999999999874 99999999999999 9999998864 35679999999999999999988 55
Q ss_pred cccccCCcccCCChHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeeccc-----CcHH
Q 005816 539 DVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR-----VNDQ 613 (676)
Q Consensus 539 ~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k-----~~~q 613 (676)
....+..+ .....+...|+++ ...+++|++||+|+ ++.++|+.||++|+.+ ||+||||..++ .+++
T Consensus 72 ~~~~~~~~----~~~~~~~~~~~~~---~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~ 142 (393)
T cd02826 72 VSWIEDLN----NSFKDLKSVFKNA---IKAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQ 142 (393)
T ss_pred cceeeccc----ccHHHHHHHHHHH---hhcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccHH
Confidence 43332211 0123344444443 33478999999998 7789999999999988 99999999742 5689
Q ss_pred HHHHHHHHHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCC-CCCCCcEEEEEeeC
Q 005816 614 YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPG-HSDIPSIAAVISFH 676 (676)
Q Consensus 614 ~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g-~~~~pSIaavVaS~ 676 (676)
|++||+||||+||||+||.|+.. .+...+|||||+||+|++++ ....|||+|+|||+
T Consensus 143 ~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~ 200 (393)
T cd02826 143 TLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANL 200 (393)
T ss_pred HHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeec
Confidence 99999999999999999999742 12347899999999999986 33589999999984
No 7
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.90 E-value=4.3e-24 Score=198.35 Aligned_cols=130 Identities=39% Similarity=0.587 Sum_probs=108.5
Q ss_pred CcHHHHHHHhcCCCCCCchhH-HHHHHHhcceEEEEEecC--ceEEEeccCccccccceeecccCCCCCCCCCccceeee
Q 005816 286 GPVVDFLIANQNVRDPFSIDW-AKAKRTLKNLRIKTITSN--QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEIT 362 (676)
Q Consensus 286 ~~v~d~l~~~~~~~~~~~~~~-~~~~~~Lkgl~V~t~~~~--r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iT 362 (676)
++|+|+|.++.+.+......+ .++++.|+|++|.++|++ |.|+|.+|++.++++.+|+.+. +.++|
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~-----------g~~it 69 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDND-----------GKEIT 69 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETT-----------SEEEE
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCC-----------CceEE
Confidence 479999999877554332223 348999999999999998 9999999999999999998762 25999
Q ss_pred HHHHHHHhcCcccccCCCCceEEcCCCCC--CceecccceeecCCCccCCCCCHHHHHHHHHHHhcC
Q 005816 363 VYDYFVNNRNIDLRYSGDLPCINVGKPKR--PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQK 427 (676)
Q Consensus 363 V~~Yf~~~Y~i~L~~~p~lPll~vg~~~~--~~ylP~Elc~i~~~Qr~~~kLs~~q~~~mi~~~~~~ 427 (676)
|+|||+++||++|+| |+||||.++..++ ++|||||||.|+|+|++.+++.+.|++.|++.+|.+
T Consensus 70 v~eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 70 VAEYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HHHHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred hHHHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 999999999999999 9999999988777 999999999999999999999999999999998863
No 8
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.81 E-value=9.4e-20 Score=164.15 Aligned_cols=107 Identities=41% Similarity=0.773 Sum_probs=93.2
Q ss_pred CcHHHHHHHhcCCCCC---CchhHHHHHHHhcceEEEEEec---CceEEEeccCccccccceeecccCCCCCCCCCccce
Q 005816 286 GPVVDFLIANQNVRDP---FSIDWAKAKRTLKNLRIKTITS---NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQEL 359 (676)
Q Consensus 286 ~~v~d~l~~~~~~~~~---~~~~~~~~~~~Lkgl~V~t~~~---~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~ 359 (676)
++|+|++.++.+.... .+.++.++.++|+|++|.++|. +|.|+|.||++.++.+.+|..++++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~----------~ 71 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGE----------K 71 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCC----------c
Confidence 6899999988765432 2346788999999999999997 6999999999999989999865421 4
Q ss_pred eeeHHHHHHHhcCcccccCCCCceEEcCCCCCCceecccceeec
Q 005816 360 EITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELV 403 (676)
Q Consensus 360 ~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~~~~~~ylP~Elc~i~ 403 (676)
++||+|||+++||++|+| |+||||++|+.++++|+|||||.|+
T Consensus 72 ~isV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 72 EISVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EEEHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 899999999999999999 9999999999889999999999984
No 9
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.81 E-value=8.6e-20 Score=164.22 Aligned_cols=106 Identities=23% Similarity=0.344 Sum_probs=90.4
Q ss_pred CCcHHHHHHHhcCCCCC----CchhHHHHHHHhcceEEEEEec--CceEEEeccCccccccceeecccCCCCCCCCCccc
Q 005816 285 PGPVVDFLIANQNVRDP----FSIDWAKAKRTLKNLRIKTITS--NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (676)
Q Consensus 285 ~~~v~d~l~~~~~~~~~----~~~~~~~~~~~Lkgl~V~t~~~--~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~ 358 (676)
.++|+|++.+..+.++. .+.++.++.++|+|++|.++|+ +|.|+|.||++.+++++ |...+ +
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~-----------~ 68 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSD-----------G 68 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCC-----------C
Confidence 36899999887654332 3446788999999999999998 79999999999999888 75432 2
Q ss_pred eeeeHHHHHHHhcCcccccCCCCceEEcCCC---CCCceecccceeec
Q 005816 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKP---KRPTYIPLELCELV 403 (676)
Q Consensus 359 ~~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~~---~~~~ylP~Elc~i~ 403 (676)
.++||+|||+++||++|+| |+||||++|+. .+.+|||||||.|+
T Consensus 69 ~~isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 69 KEITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred CEEEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 4899999999999999999 99999999987 77899999999985
No 10
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.81 E-value=5.2e-20 Score=165.17 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=89.6
Q ss_pred CcHHHHHHHhcCCCCCCchhHHHHHHHhcceEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHH
Q 005816 286 GPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYD 365 (676)
Q Consensus 286 ~~v~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~~ 365 (676)
.+|+|++....+... ...+++++++.|+|++|.+.|++|.|+|++|++++++.++|+.+++ .++||+|
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~-----------~~~S~~~ 69 (117)
T cd02845 2 TTVLDRMHKLYRQET-DERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDG-----------TEITFVE 69 (117)
T ss_pred eeHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCC-----------CeeeHHH
Confidence 467888877554221 1125778999999999999999999999999999999999975432 3789999
Q ss_pred HHHHhcCcccccCCCCceEEcCCC--------CCCceecccceeecCC
Q 005816 366 YFVNNRNIDLRYSGDLPCINVGKP--------KRPTYIPLELCELVSL 405 (676)
Q Consensus 366 Yf~~~Y~i~L~~~p~lPll~vg~~--------~~~~ylP~Elc~i~~~ 405 (676)
||+++||+.|+| ++||||.++.. .+++|||||||.++|.
T Consensus 70 Yy~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltgl 116 (117)
T cd02845 70 YYKKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTGL 116 (117)
T ss_pred HHHHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcCC
Confidence 999999999999 99999999753 3589999999999984
No 11
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.73 E-value=3.5e-18 Score=180.72 Aligned_cols=98 Identities=43% Similarity=0.684 Sum_probs=81.2
Q ss_pred EEEEEcCCCCCCCchhhhhhhcccccCceeeEeeccc---C--cHHHHHHHHHHHhhccCCce-eeccccCCCCCCCcCC
Q 005816 573 FLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---V--NDQYLTNVLLKINAKLGGLN-SLLAVEHSPSIPIVSK 646 (676)
Q Consensus 573 ~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k---~--~~q~~~Ni~lKINaKLGG~N-~~l~~~~~~~~p~~~~ 646 (676)
++|||+|+ ++.+.|..+|++++.++||+|||+..++ . ..+++.||+||||+||||.| |.++.. ...++
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~--- 74 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL--- 74 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---
Confidence 58899998 8889999999999999999999999752 3 36899999999999999996 554421 11222
Q ss_pred CCeEEEeeeccCCCCCCCCCCcEEEEEeeC
Q 005816 647 VPTIILGMDVSHGSPGHSDIPSIAAVISFH 676 (676)
Q Consensus 647 ~~tMIiG~DVsHp~~g~~~~pSIaavVaS~ 676 (676)
.+|||||+||+|++++....||++|+|+|.
T Consensus 75 ~~~miIGidv~h~~~~~~~~~sv~g~~~s~ 104 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGSDKNPSVVGFVASF 104 (302)
T ss_dssp SEEEEEEEEEEEESSTCTCSCEEEEEEEEE
T ss_pred CceEEEEEEEEecCcccCCcceeeEEEEec
Confidence 789999999999998764589999999984
No 12
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.61 E-value=1.3e-15 Score=167.44 Aligned_cols=111 Identities=24% Similarity=0.290 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEEcCCCCC------CCchhhhhhhcccccCceeeEeeccc-----CcHHHHHHHHHHHh
Q 005816 555 RVEKMFDEIQSKLPGAPQFLLCLLPERKN------SDLYGPWKRKNLADFGIVTQCMAPMR-----VNDQYLTNVLLKIN 623 (676)
Q Consensus 555 ~~~~~~~~l~~~~~~~~~~vlvIlp~~k~------~~~Y~~iK~~~~~~~GI~TQci~~~k-----~~~q~~~Ni~lKIN 623 (676)
.+...++...+.....++++||++|+ +. .++|+.||++| .+.||+||||..++ ...+++.||++|||
T Consensus 95 ~~~~a~~~~~~~~~~~~~~~lvilP~-~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~ 172 (404)
T cd04659 95 AIIEAVDLALSESSQGVDVVIVVLPE-DLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALY 172 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCH-HHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHH
Confidence 33334444333323468999999998 54 78999999987 57999999998753 24678999999999
Q ss_pred hccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCCCCCCCcEEEEEee
Q 005816 624 AKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVISF 675 (676)
Q Consensus 624 aKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g~~~~pSIaavVaS 675 (676)
+||||+||.|+.. ...+|||||+||+|+..+....+|+|+|+.+
T Consensus 173 aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~vf~~ 216 (404)
T cd04659 173 AKLGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQVFDS 216 (404)
T ss_pred HhcCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEEEcC
Confidence 9999999999631 2368999999999998764346888888754
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.55 E-value=2.9e-15 Score=113.65 Aligned_cols=51 Identities=49% Similarity=0.762 Sum_probs=41.6
Q ss_pred eccccccCCCCCCcccCCCcEEEeecceEEEEecCCeeEEeeecceeeeecC
Q 005816 234 LVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP 285 (676)
Q Consensus 234 ~vg~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~ 285 (676)
.+||+||+.+... .+|++|+|+|+|||+|+|++.++|+||||+|+++||++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999987654 78999999999999999999999999999999999975
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.50 E-value=2e-14 Score=131.80 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=70.7
Q ss_pred HHHHhcceEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCcccccCCCCceEEcCC
Q 005816 309 AKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGK 388 (676)
Q Consensus 309 ~~~~Lkgl~V~t~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~ 388 (676)
..+.|+|++|.|.|++|.|+|.+|+ +.+++++|+.++++ ..+||+|||+++|||+|+| ++||||.+..
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~----------~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~ 94 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGL----------GYATYAEYFKEKYGIVLNH-PNQPLLKGKQ 94 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCC----------ceeeHHHHHHHHhCceecc-CCcceEEEec
Confidence 4678999999999999999999999 89999999765321 3689999999999999999 9999997641
Q ss_pred -----------------------CCCCceecccceeecC
Q 005816 389 -----------------------PKRPTYIPLELCELVS 404 (676)
Q Consensus 389 -----------------------~~~~~ylP~Elc~i~~ 404 (676)
....++||||||.+.+
T Consensus 95 ~~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 95 IFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccceecccccccccccccccccceEEEeChHHhcccc
Confidence 0114689999999875
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.74 E-value=1.2e-08 Score=90.36 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=58.2
Q ss_pred HHHhcceEEEEEecC----ceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCcccccCCCCceEE
Q 005816 310 KRTLKNLRIKTITSN----QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCIN 385 (676)
Q Consensus 310 ~~~Lkgl~V~t~~~~----r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~~Yf~~~Y~i~L~~~p~lPll~ 385 (676)
...+.|..|.+.|+| +.|+|.+|.++.++.++|+.+ ..+|++|||+++|||.|++ ++||||.
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~-------------~~~Ty~eYyk~KY~I~I~~-~~QPLL~ 103 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP-------------EYETFEEYYKKKYKLDIQN-LNQPLLD 103 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC-------------CCccHHHHHHHhcCeEecc-CCCCcEe
Confidence 457899999999998 899999999999999999533 2699999999999999999 9999999
Q ss_pred cCC
Q 005816 386 VGK 388 (676)
Q Consensus 386 vg~ 388 (676)
|..
T Consensus 104 v~~ 106 (122)
T cd02843 104 VDH 106 (122)
T ss_pred ecC
Confidence 854
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=92.80 E-value=0.27 Score=54.67 Aligned_cols=170 Identities=19% Similarity=0.115 Sum_probs=95.7
Q ss_pred cCCCeeecCC-CcccCCCCCccccCCceecCCCccceEEEEEe-CCc-c---cHHHHHHHHHHHHhhcC-CcC--CCCcc
Q 005816 469 LPAPRLKFGN-GEDFSPRNGRWNFNNKKLVQPTKIERWAVVNF-SAR-C---DIRSLVRDLIKCGEMKG-ILI--DQPFD 539 (676)
Q Consensus 469 L~~P~i~~g~-~~~~~p~~g~Wn~~~~kf~~p~~i~~W~vv~~-~~~-~---~~~~f~~~l~~~~~~~G-~~i--~~p~~ 539 (676)
-.+|.|..|+ |++.....--|++- ....|.....|.-+.. ..+ . ....+.+.+....+..| +.. .-+..
T Consensus 307 ek~pdiv~g~~gktti~n~nl~~yl--py~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~eg~~l 384 (685)
T COG1431 307 EKGPDIVIGTEGKTTIDNVNLFCYL--PYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEGLTL 384 (685)
T ss_pred ccCCceEecccceeeEehhhhhhhh--cccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhccccee
Confidence 3566777766 43322222334331 2234544555655432 112 1 47788888888888766 332 11211
Q ss_pred ccccCCcccCCChHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCcHHHHH
Q 005816 540 VFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLT 616 (676)
Q Consensus 540 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~~ 616 (676)
. .. + .|....+.+-.++.++ ....+...-+- ++...|+.+|+ .+.-|++|.+.-. +.-.-+++
T Consensus 385 ~-~a--~-~r~~~kddl~~iIkei------d~ee~~k~e~y-kdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~t 450 (685)
T COG1431 385 H-VA--G-KRPKMKDDLTKIIKEI------DVEELKKQEMY-KDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTKT 450 (685)
T ss_pred e-ec--c-cchhhhccchhhhhhh------hhhhhcccccc-ccchHHHHHHh---hcccCcceeeeccccCCcchhhhh
Confidence 1 10 0 1111112222333333 11222333333 66788999998 4566999999863 34455899
Q ss_pred HHHHHHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCC
Q 005816 617 NVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPG 662 (676)
Q Consensus 617 Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g 662 (676)
|+|+|+-+|-+|+++.+... .- .-+-|+|+||+..+-|
T Consensus 451 nla~~~~~ktlgqpY~~r~~---~g-----pvDaivGlDvsr~~~g 488 (685)
T COG1431 451 NLASKRYLKTLGQPYLKRNG---LG-----PVDAIVGLDVSRVSEG 488 (685)
T ss_pred HHHHHHHHHhcCCceeeecc---CC-----CccceeeeeeeEEeeC
Confidence 99999999999999988521 11 2358999999998754
No 17
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=56.85 E-value=19 Score=32.28 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCcHHHHHHHHHHHhhc
Q 005816 555 RVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (676)
Q Consensus 555 ~~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (676)
.+...++.++.+ ...|.|+++...+...+..|...|...+.+.||.+..+.. .....+-+-..+-++|.-
T Consensus 15 ~l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 15 ELKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 344455556655 3468898888876456778999998888899999999986 445667788888888864
No 18
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.74 E-value=34 Score=35.94 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhcc--CCce
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAKL--GGLN 630 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaKL--GG~N 630 (676)
+..-++.++++....|.|+++...++..+..|...|.....+.||.+..+... .....-+.+.+.++|.-- -|+-
T Consensus 17 l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 94 (293)
T PRK14185 17 IAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFI 94 (293)
T ss_pred HHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEE
Confidence 33444555554334688988888775678899999998888999999988764 334444667777887643 3653
No 19
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.74 E-value=55 Score=34.31 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=50.0
Q ss_pred HHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCc
Q 005816 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGL 629 (676)
Q Consensus 558 ~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~ 629 (676)
.-++.++++....|.|+++...+...+..|...|.....+.||.+..+... ....+-+.+.+.++|.= .-|+
T Consensus 20 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GI 94 (288)
T PRK14171 20 LEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGI 94 (288)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEE
Confidence 334445444334678888887765678899998888888999999988763 44555566778888654 3455
No 20
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.74 E-value=50 Score=34.56 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhh--ccCCcee
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA--KLGGLNS 631 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINa--KLGG~N~ 631 (676)
+...++.++++....|.|+++...++..+..|-..|...+.+.||.+..+... .....-+-+.+.++|. ..-|+--
T Consensus 17 l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlv 95 (286)
T PRK14184 17 LKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILL 95 (286)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEE
Confidence 34444555554334578888888765678899999988888999999988753 3445556678888886 3446533
No 21
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.81 E-value=61 Score=34.11 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=51.5
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhcc--CCce
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAKL--GGLN 630 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaKL--GG~N 630 (676)
...++.++.+....|.|+++...++..+..|...|...+.+.||.+..+... .....-+-.++.++|.-- -|+-
T Consensus 19 k~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIl 95 (294)
T PRK14187 19 ATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGIL 95 (294)
T ss_pred HHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 3334445443223578888888775778899999998888999999998764 344445777888887654 3553
No 22
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.95 E-value=52 Score=34.46 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCcee
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLNS 631 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~N~ 631 (676)
+...++.++++....|.|+++...++..+..|...|...+.+.||.+..+... .....-+...+.++|.- .-|+--
T Consensus 19 lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlv 97 (285)
T PRK10792 19 VAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILV 97 (285)
T ss_pred HHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 33444555544333578888877765677889999998888999999998764 34444566777888865 346533
No 23
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.92 E-value=57 Score=34.39 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=52.3
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhcc--CCcee
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAKL--GGLNS 631 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaKL--GG~N~ 631 (676)
...++.++++..-.|.|+++...++..+..|...|...+.+.||.+-.+... .....-+.+++.++|.-- -|+-.
T Consensus 19 k~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIiv 96 (297)
T PRK14186 19 QAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILL 96 (297)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3344445544333578888888765678899999998888999999888763 444545667888888743 56643
No 24
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.51 E-value=71 Score=33.46 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=51.0
Q ss_pred HHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhcc--CCce
Q 005816 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAKL--GGLN 630 (676)
Q Consensus 558 ~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaKL--GG~N 630 (676)
..++.++++....|.|+++...+...+..|...|...+.+.||.+-.+... .....-+-+.+-++|.-= -|+-
T Consensus 26 ~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIl 101 (287)
T PRK14176 26 SGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGIL 101 (287)
T ss_pred HHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEE
Confidence 334444443223578988888775778899999998888999999888764 444555667888887643 4653
No 25
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.45 E-value=65 Score=33.76 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=55.0
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCceeec
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLNSLL 633 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~N~~l 633 (676)
...++.++++....|.|.++...++..+..|-.+|.....+.||.+..+... .....-+..++-++|.. .-|+|-.+
T Consensus 20 ~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 20 SVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred HHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 3344445544333578888888775678899999998888999999888763 33444477788888875 66887665
Q ss_pred c
Q 005816 634 A 634 (676)
Q Consensus 634 ~ 634 (676)
-
T Consensus 100 P 100 (283)
T PRK14192 100 P 100 (283)
T ss_pred C
Confidence 3
No 26
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.80 E-value=60 Score=33.93 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=50.6
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCce
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLN 630 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~N 630 (676)
...++.+++.....|.|.++...++..+..|-..|.....+.||.+..+... .....-+.+.+-++|.- .-|+-
T Consensus 18 ~~~v~~l~~~~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIl 94 (281)
T PRK14183 18 KKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGIL 94 (281)
T ss_pred HHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEE
Confidence 3344445431123578988888775678899999998889999999888753 34444466777888744 34553
No 27
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.40 E-value=65 Score=33.72 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhh--ccCCcee
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA--KLGGLNS 631 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINa--KLGG~N~ 631 (676)
+...++.++++....|.|+++...+...+..|...|...+.+.||.+..+... .....-+.+.+.++|. ..-|+--
T Consensus 19 lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlv 97 (284)
T PRK14177 19 IRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILL 97 (284)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 33344555544333578888877664677889999888888999999998864 3455556788888886 5567643
No 28
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=43.25 E-value=60 Score=34.86 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=42.6
Q ss_pred HHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc
Q 005816 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (676)
Q Consensus 560 ~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK 625 (676)
++.++++....|.|+++++.++..+..|-..|...+.+.||.+..+... .....-+...+.++|.-
T Consensus 76 v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D 142 (345)
T PLN02897 76 VRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNED 142 (345)
T ss_pred HHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444443333567877777765667788888887777888888877753 33333355677777643
No 29
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=42.82 E-value=43 Score=39.25 Aligned_cols=12 Identities=0% Similarity=0.177 Sum_probs=7.1
Q ss_pred HHHHHHHHhccc
Q 005816 216 FRVLDIILRQHA 227 (676)
Q Consensus 216 iq~Lniilr~~~ 227 (676)
-.+|+.++++.+
T Consensus 732 e~~iqnLik~lP 743 (1102)
T KOG1924|consen 732 ESMIQNLIKHLP 743 (1102)
T ss_pred HHHHHHHHHhCC
Confidence 355666666655
No 30
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.53 E-value=68 Score=33.80 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhcc--CCc
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAKL--GGL 629 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaKL--GG~ 629 (676)
+...++.++++....|.|+++...++..+..|...|.....+.||.+-.+... .....-+.+++.++|.-- -|+
T Consensus 18 i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GI 94 (296)
T PRK14188 18 VAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGI 94 (296)
T ss_pred HHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEE
Confidence 33344445443233578988888775678889999988888999998887653 344444667888887663 355
No 31
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=42.46 E-value=72 Score=33.63 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=47.0
Q ss_pred HHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCcHHHHHHHHHHHhhcc
Q 005816 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAKL 626 (676)
Q Consensus 560 ~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKINaKL 626 (676)
++.++++....|.|+++...++..+..|-..|...+.+.||.+-.+.. ......-+...+.++|.--
T Consensus 29 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~ 96 (299)
T PLN02516 29 VAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNANP 96 (299)
T ss_pred HHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 344444323357888887776567888999998888899999988876 3444444667777777653
No 32
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.56 E-value=68 Score=33.77 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=48.8
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK 625 (676)
...++.++++....|.|+++...++..+..|...|...+.+.||.+-.+... .....-+.+.+.++|.-
T Consensus 18 ~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 18 KTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334445443223578988888775678899999998889999999888764 34444566777888764
No 33
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=41.24 E-value=73 Score=34.45 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=48.9
Q ss_pred HHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCce
Q 005816 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLN 630 (676)
Q Consensus 558 ~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~N 630 (676)
.-++.++++....|.|+++...++..+..|-..|...+.+.||.+..+... ....+-+-+.+.++|.- .-|+-
T Consensus 91 ~~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIl 166 (364)
T PLN02616 91 IEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGIL 166 (364)
T ss_pred HHHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEE
Confidence 334445554333578888888775678889999888888999998877753 34444566777777753 33553
No 34
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=40.54 E-value=48 Score=38.84 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=14.3
Q ss_pred ccCCCCCCCCCCCEEEEEeeEEEEEec
Q 005816 50 VPISRRGLGSRGQRISLLTNHFKVNVT 76 (676)
Q Consensus 50 ~~~~Rp~~Gt~G~~i~l~tN~f~v~~~ 76 (676)
++|+|...+.. .+-.+.-|+|=|+++
T Consensus 624 ~~Mrr~nW~kI-~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 624 VPMRRFNWSKI-VPRDLSENCFWVKVN 649 (1102)
T ss_pred CccccCCcccc-CccccCccceeeecc
Confidence 55666655542 445555666665544
No 35
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.34 E-value=69 Score=33.78 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK 625 (676)
+..-++.++++....|.|+++..-++..+..|..+|...+.+.||.+-.+... .....-+...+.++|.-
T Consensus 19 lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 89 (297)
T PRK14168 19 IRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNND 89 (297)
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444555554334578888888765677889999988888999998877653 34444455677788754
No 36
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.11 E-value=78 Score=33.14 Aligned_cols=73 Identities=12% Similarity=0.240 Sum_probs=49.9
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCc
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGL 629 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~ 629 (676)
...++.++++....|.|+++...++..+..|...|...+.+.||.+-.+... .....-+-+++.++|.- .-|+
T Consensus 19 k~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GI 94 (284)
T PRK14179 19 AEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGI 94 (284)
T ss_pred HHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 3344445444233578888888765677889999887778999999887753 44455566788888764 3455
No 37
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.89 E-value=73 Score=33.30 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeeccc-CcHHHHHHHHHHHhhc
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR-VNDQYLTNVLLKINAK 625 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k-~~~q~~~Ni~lKINaK 625 (676)
...++.++++..-.|.|+++...+...+..|...|...+.+.||.+..+.... ....-+.+++.++|.-
T Consensus 18 k~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 18 ATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 87 (282)
T ss_pred HHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444454432235788888776646678899999888889999998887643 3444466777888754
No 38
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.36 E-value=77 Score=33.16 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCce
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLN 630 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~N 630 (676)
+...++.++++ ...|.|+++...++..+..|-..|...+.+.||.+..+... .....-+...+.++|.- .-|+-
T Consensus 17 l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 93 (282)
T PRK14169 17 LKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAIL 93 (282)
T ss_pred HHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 33344455543 23578888888775678899999998888999999888764 33444466788888763 34653
No 39
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.19 E-value=82 Score=32.89 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhcc--CCc
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAKL--GGL 629 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaKL--GG~ 629 (676)
+...++.++++....|.|.++...+...+..|-..|...+.+.||.+..+... .....-+.+.+.++|.-- -|+
T Consensus 18 lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GI 94 (278)
T PRK14172 18 IKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGI 94 (278)
T ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeE
Confidence 33444555443212478888888775667789999888888999999888753 334444667778887643 355
No 40
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.02 E-value=78 Score=33.14 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=49.4
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhcc--CCc
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAKL--GGL 629 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaKL--GG~ 629 (676)
...++.++++ ...|.|+++...++..+..|-..|.....+.||.+..+... .....-+...+.++|.-- -|+
T Consensus 20 ~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GI 94 (284)
T PRK14190 20 KEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGI 94 (284)
T ss_pred HHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 3344444443 23578888877765677889999988888999999888764 344444667777887653 355
No 41
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.98 E-value=77 Score=33.14 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=49.7
Q ss_pred HHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeeccc-CcHHHHHHHHHHHhhc--cCCce
Q 005816 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR-VNDQYLTNVLLKINAK--LGGLN 630 (676)
Q Consensus 558 ~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k-~~~q~~~Ni~lKINaK--LGG~N 630 (676)
..++.++++ ...|.|+++...+...+..|-..|.....+.||.+..+.... ....-+.+.+.++|.- .-|+-
T Consensus 19 ~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIi 93 (282)
T PRK14166 19 EKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGIL 93 (282)
T ss_pred HHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 334445443 235788888777656778899999888889999999998643 4444466777888763 34653
No 42
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.55 E-value=85 Score=32.87 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=48.7
Q ss_pred HHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhcc--CCce
Q 005816 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAKL--GGLN 630 (676)
Q Consensus 560 ~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaKL--GG~N 630 (676)
++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+... ....+-+.+.+.++|.-- -|+-
T Consensus 23 v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIl 95 (284)
T PRK14193 23 VAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYI 95 (284)
T ss_pred HHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 3344433 23578888877765667899999998888999999888754 344444667778887653 3553
No 43
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.41 E-value=94 Score=32.57 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=50.5
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCce
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLN 630 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~N 630 (676)
...++.++++....|.|+++..-++..+..|-..|...+.+.||.+-.+... .....-+.+.+-++|.- .-|+-
T Consensus 18 ~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 94 (285)
T PRK14191 18 KNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGIL 94 (285)
T ss_pred HHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 3334445443334578888877765678889999988888999999888764 34444566788888854 34553
No 44
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.98 E-value=92 Score=32.90 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=48.1
Q ss_pred HHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCc
Q 005816 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGL 629 (676)
Q Consensus 558 ~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~ 629 (676)
..++.++++ .-.|.|+++...++..+..|-..|...+.+.||.+-.+... .....-+.+.+.++|.= .-|+
T Consensus 22 ~~i~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GI 95 (301)
T PRK14194 22 EDVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGI 95 (301)
T ss_pred HHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeE
Confidence 334444443 23578888888775677889999988888999999888753 34444466777777653 3455
No 45
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.82 E-value=1.1e+02 Score=32.05 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=47.3
Q ss_pred HHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCc
Q 005816 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGL 629 (676)
Q Consensus 559 ~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~ 629 (676)
-++.++++ ...|.|+++...++..+..|...|.....+.||.+-.+... .....-+-+.+-++|.= .-|+
T Consensus 21 ~i~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GI 93 (284)
T PRK14170 21 EVAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGI 93 (284)
T ss_pred HHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeE
Confidence 34444443 23578888877765667889999988888999999888763 33333455677777653 3455
No 46
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.15 E-value=1.2e+02 Score=32.08 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=48.3
Q ss_pred HHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhcc--CCc
Q 005816 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAKL--GGL 629 (676)
Q Consensus 559 ~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaKL--GG~ 629 (676)
.++.+++. ...|.|+++...++..+..|...|...+.+.||.+-.+... .....-+.+.+.++|.-- -|+
T Consensus 21 ~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GI 93 (297)
T PRK14167 21 AIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGI 93 (297)
T ss_pred HHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 34444443 23578888877765677889999988888999999887753 344445667778887653 355
No 47
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=30.15 E-value=76 Score=31.00 Aligned_cols=45 Identities=24% Similarity=0.438 Sum_probs=34.1
Q ss_pred EEeeEEEEEecCCCceEEEEEEEEEeCCCCCCCCCcchHHHHHHHHHHH
Q 005816 66 LLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETY 114 (676)
Q Consensus 66 l~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~~~~~~ 114 (676)
+--=+|+..+...+..+|-|.|.+ .+...++++++-+++.+....
T Consensus 105 vgf~~Frf~vd~g~~vlYcyEvqv----~~~yR~kGiGk~LL~~l~~~a 149 (202)
T KOG2488|consen 105 VGFTMFRFTVDTGDPVLYCYEVQV----ASAYRGKGIGKFLLDTLEKLA 149 (202)
T ss_pred eeEEEEEEEcccCCeEEEEEEEee----hhhhhccChHHHHHHHHHHHH
Confidence 334467777765567899999999 456778999999998876543
No 48
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.89 E-value=1.3e+02 Score=31.62 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCcee
Q 005816 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLNS 631 (676)
Q Consensus 569 ~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~N~ 631 (676)
..|.|+++...++..+..|...|...+.+.||.+..+... .....-+.+.+.++|.- .-|+--
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 93 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILV 93 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3578888888765667889999988888999999888764 34444466788888864 346533
No 49
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.40 E-value=1.3e+02 Score=31.56 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=48.8
Q ss_pred HHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhh--ccCCce
Q 005816 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA--KLGGLN 630 (676)
Q Consensus 558 ~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINa--KLGG~N 630 (676)
..++.++++ .-.|.|+++...+...+..|-..|...+.+.||.+-.+... ....+-+-+.+-++|. ..-|+-
T Consensus 19 ~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIi 93 (282)
T PRK14182 19 TEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGIL 93 (282)
T ss_pred HHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 334444433 23578888888765677889999888888999999888763 3444456677778876 334553
No 50
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.57 E-value=1.6e+02 Score=30.96 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=48.1
Q ss_pred HHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCc
Q 005816 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGL 629 (676)
Q Consensus 558 ~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~ 629 (676)
..++.++++ ...|.|.++...++..+..|...|...+.+.||.+-.+... .....-+..++.++|.- .-|+
T Consensus 21 ~~i~~l~~~-g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GI 94 (285)
T PRK14189 21 QRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGI 94 (285)
T ss_pred HHHHHHHhC-CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeE
Confidence 334444433 23578888887765678889999988888999999887753 34444566777777653 3455
No 51
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=28.29 E-value=1.3e+02 Score=31.39 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=52.3
Q ss_pred HHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhh--ccCCcee
Q 005816 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA--KLGGLNS 631 (676)
Q Consensus 557 ~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINa--KLGG~N~ 631 (676)
....+.++++....|.|++++..+.-.+..|-..|.....+.||.+...... .....-+.++.-++|. ..-|+-.
T Consensus 17 k~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlV 94 (283)
T COG0190 17 KEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILV 94 (283)
T ss_pred HHHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEE
Confidence 3334445543334688988888764567899999999989999999999863 4555667777777754 4445533
No 52
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.36 E-value=1.4e+02 Score=31.33 Aligned_cols=60 Identities=18% Similarity=0.343 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCc
Q 005816 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGL 629 (676)
Q Consensus 570 ~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~ 629 (676)
.|.|+++...++..+..|-..|...+.+.||.+-.+... .....-+-..+.++|.- .-|+
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GI 94 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGI 94 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE
Confidence 578888877765667889999988888999999888764 33444456677777653 3455
No 53
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.13 E-value=1.5e+02 Score=31.02 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=41.9
Q ss_pred CCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhh
Q 005816 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (676)
Q Consensus 569 ~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINa 624 (676)
..|.|+++...++..+..|...|...+.+.||.+..+... .....-+..++.++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678888877765677889999988888999999888763 3344445577778875
No 54
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.15 E-value=1.9e+02 Score=30.15 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc
Q 005816 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK 625 (676)
Q Consensus 569 ~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK 625 (676)
..|.|+++...++..+..|-..|.....+.||.+..+... .....-+...+.++|.-
T Consensus 25 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 25 LYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578888777665667789888888888889988888753 33444455666777654
No 55
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=24.77 E-value=64 Score=39.47 Aligned_cols=32 Identities=38% Similarity=0.778 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCCC
Q 005816 15 NGAPDSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLG 58 (676)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rp~~G 58 (676)
.+.|+.-||||| .||+.+|.. ...||.-||+.
T Consensus 2 a~lppg~ppppp-pppg~epps-----------~pppPppPg~~ 33 (2365)
T COG5178 2 ASLPPGNPPPPP-PPPGFEPPS-----------QPPPPPPPGVN 33 (2365)
T ss_pred CCCCCCCCcccc-cCCCCCCCC-----------CCCCccCCCcc
No 56
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=21.09 E-value=58 Score=31.73 Aligned_cols=20 Identities=40% Similarity=1.124 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCCCccccc
Q 005816 18 PDSLPPPPPVIPPDFVPTRVE 38 (676)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ 38 (676)
.+-+||||| +||-+.|.-.+
T Consensus 166 ~sfmpppPP-~pp~i~p~~~d 185 (218)
T KOG4327|consen 166 NSFMPPPPP-MPPPICPDSLD 185 (218)
T ss_pred cccCCCCCC-CCcccCCCCch
Confidence 344788888 78878776543
Done!