Query 005816
Match_columns 676
No_of_seqs 225 out of 1054
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 6E-110 2E-114 978.6 58.4 575 48-676 24-620 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 4.9E-98 2E-102 876.7 42.7 610 46-676 14-788 (1046)
3 1yvu_A Hypothetical protein AQ 100.0 3.1E-58 1.1E-62 526.6 17.5 412 186-676 77-522 (706)
4 1u04_A Argonaute, hypothetical 100.0 6.9E-54 2.4E-58 490.1 23.4 494 63-675 3-578 (771)
5 3ho1_A Argonaute; argonaute, p 100.0 1.3E-43 4.3E-48 398.9 30.5 470 63-674 6-495 (685)
6 2yha_A Post-transcriptional ge 100.0 3.6E-32 1.2E-36 293.0 14.4 174 491-676 2-189 (388)
7 2yhb_A QDE-2, post-transcripti 100.0 3.3E-31 1.1E-35 289.1 14.5 174 491-676 2-189 (437)
8 1vyn_A Argonaute2; nucleic aci 99.9 2.8E-28 9.4E-33 226.4 9.0 131 283-427 2-143 (143)
9 4g0o_A Protein argonaute 5; MI 99.9 2.3E-27 7.8E-32 219.4 12.3 132 493-633 2-139 (139)
10 4g0x_A Protein argonaute 1; MI 99.9 1.1E-26 3.9E-31 217.0 12.7 138 493-633 2-147 (147)
11 4g0m_A Protein argonaute 2; MI 99.9 1.5E-26 5E-31 216.9 9.6 139 493-633 2-150 (150)
12 3luc_A Protein argonaute-2; MI 99.9 4.2E-26 1.4E-30 210.8 11.7 130 492-630 1-138 (138)
13 2xfm_A MIWI, PIWI-like protein 99.9 2.9E-26 1E-30 214.4 7.0 135 284-438 1-150 (150)
14 3qir_A PIWI-like protein 2; st 99.9 5E-25 1.7E-29 204.1 7.1 131 284-435 1-147 (148)
15 3mj0_A Protein argonaute-2; ar 99.9 3.5E-24 1.2E-28 193.0 9.4 113 284-410 1-124 (124)
16 3o7v_X PIWI-like protein 1; PI 99.9 3E-22 1E-26 179.7 9.2 114 286-419 2-124 (124)
17 1r6z_P Chimera of maltose-bind 99.8 1.6E-21 5.3E-26 219.5 9.3 124 276-413 375-509 (509)
18 2w42_A PIWI, putative uncharac 99.6 1.5E-17 5.1E-22 181.4 -0.3 165 467-662 4-193 (427)
19 2qvw_A GLP_546_48378_50642; di 98.8 2.6E-09 9E-14 123.3 6.3 85 308-405 151-254 (756)
20 4b4u_A Bifunctional protein fo 44.2 24 0.00083 35.7 5.2 72 559-630 42-116 (303)
21 4a26_A Putative C-1-tetrahydro 34.7 52 0.0018 33.3 5.9 78 556-633 22-103 (300)
22 1a4i_A Methylenetetrahydrofola 33.4 53 0.0018 33.2 5.7 76 555-630 19-98 (301)
23 4a5o_A Bifunctional protein fo 33.2 58 0.002 32.7 5.9 78 556-633 21-101 (286)
24 1b0a_A Protein (fold bifunctio 30.4 52 0.0018 33.0 5.1 76 555-630 18-96 (288)
25 2c2x_A Methylenetetrahydrofola 29.3 66 0.0023 32.2 5.6 73 556-629 19-94 (281)
26 3p2o_A Bifunctional protein fo 28.4 66 0.0023 32.2 5.4 77 556-633 20-99 (285)
27 3l07_A Bifunctional protein fo 28.0 60 0.0021 32.5 5.0 78 556-633 20-100 (285)
28 1edz_A 5,10-methylenetetrahydr 24.4 75 0.0026 32.4 5.1 73 555-629 20-95 (320)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=6.2e-110 Score=978.61 Aligned_cols=575 Identities=28% Similarity=0.519 Sum_probs=487.0
Q ss_pred ccccCCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEEeCCCCCCCCCcchHHHHHHHHHHHhhh-cCCCCeeee
Q 005816 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAE-LDGKDFAYD 126 (676)
Q Consensus 48 ~~~~~~Rp~~Gt~G~~i~l~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~~~~~~~~~-~~~~~~~yD 126 (676)
...+|+|||+||.|++|.|+||||+|++. +..+|||+|+|+| +.+.++++|+|++++++++..+ |++..+|||
T Consensus 24 ~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 24 AFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred cccCCCCCCCCCCCcEEEEEeeeEEEECC--CCceeeeeEEeCC----CcCcHHHHHHHHHHHHHHhhhhhhcCceEEEc
Confidence 45678999999999999999999999874 4679999999965 4456788999999998887433 555678999
Q ss_pred CCCceEecCCCCCCceEEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeechHHHHHHHcC
Q 005816 127 GEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRG 206 (676)
Q Consensus 127 G~~~l~s~~~L~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g 206 (676)
|+++|||+++||.+...+++.+... ++ .+.++|+|+|+++++|++++|.+||+|
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~------------~~--------------~~~~~~~V~I~~~~~i~l~~L~~~l~g 151 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLP------------GE--------------GKDRIFKVSIKWVSCVSLQALHDALSG 151 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC---------------------------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred CcceEEECCcCCCCCcceEEEEecC------------CC--------------CCCcEEEEEEEEeeecCHHHHHHHhcC
Confidence 9999999999997654433332210 00 135789999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHhcccccccceeccccccCCCCCCcccCCCcEEEeecceEEEEecCCeeEEeeecceeeeecCC
Q 005816 207 QESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPG 286 (676)
Q Consensus 207 ~~~~~~~~~iq~Lniilr~~~~~~~~~~vg~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~~ 286 (676)
......++++|+||||||+.++ .++..+||+||++..+...++|+|+|+|+||++|||+++++++||+|+++++|++++
T Consensus 152 ~~~~~~~~~iq~Lniilr~~~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~ 230 (861)
T 4f3t_A 152 RLPSVPFETIQALDVVMRHLPS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQ 230 (861)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCE
T ss_pred CCCCCcHHHHHHHHHHHHhhcc-ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCC
Confidence 8877789999999999999654 568999999999876555678999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCCCC-------CchhHHHHHHHhcceEEEEEe---cCceEEEeccCccccccceeecccCCCCCCCCCc
Q 005816 287 PVVDFLIANQNVRDP-------FSIDWAKAKRTLKNLRIKTIT---SNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEV 356 (676)
Q Consensus 287 ~v~d~l~~~~~~~~~-------~~~~~~~~~~~Lkgl~V~t~~---~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~ 356 (676)
+|+|+|.+..+.++. .+.++.+++++|+|++|.++| ++|+|+|.||++.++++.+|.++..+ +
T Consensus 231 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~-------g 303 (861)
T 4f3t_A 231 PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES-------G 303 (861)
T ss_dssp EHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS-------S
T ss_pred cHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCC-------C
Confidence 999999887654332 234678899999999999999 56899999999999999999865322 1
Q ss_pred cceeeeHHHHHHHhcCcccccCCCCceEEcCCCCCCceecccceeecCCCccCCCCCHHHHHHHHHHHhcChHHHHHHHH
Q 005816 357 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLS 436 (676)
Q Consensus 357 ~~~~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~~~~~~ylP~Elc~i~~~Qr~~~kLs~~q~~~mi~~~~~~P~~R~~~i~ 436 (676)
++.+|||+|||+++|||+|+| |+||||++|+.++++|||||||.|++||+|+++|+++|+++|+++|+..|.+|.+.|.
T Consensus 304 ~~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~ 382 (861)
T 4f3t_A 304 QTVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEIS 382 (861)
T ss_dssp CEEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CceeEEHHHHHHHhcCcccCC-CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHH
Confidence 235899999999999999999 9999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchhhcccCceecCceeEeeeeecCCCeeecCCCc--ccCCCCCccccCCceecCCCccceEEEEEeCCc-
Q 005816 437 NALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR- 513 (676)
Q Consensus 437 ~~~~~l~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~--~~~p~~g~Wn~~~~kf~~p~~i~~W~vv~~~~~- 513 (676)
++++.++++.+++|++|||+|+++|++|+||+|+||+|.||++. ...|.+|+|++++++|++|+++++|++++|+..
T Consensus 383 ~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~ 462 (861)
T 4f3t_A 383 KLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQR 462 (861)
T ss_dssp HHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTT
T ss_pred HHHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcc
Confidence 99999988888999999999999999999999999999999753 357899999999999999999999999998642
Q ss_pred ----ccHHHHHHHHHHHHhhcCCcCCC-CccccccCCcccCCChHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchh
Q 005816 514 ----CDIRSLVRDLIKCGEMKGILIDQ-PFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYG 588 (676)
Q Consensus 514 ----~~~~~f~~~l~~~~~~~G~~i~~-p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~ 588 (676)
..+++|++.|.+.|+.+||.+.. |..+.... ..++++.+|+.+++.. .+++|||||+|+ + .+.|+
T Consensus 463 ~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~-------~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~-~-~~~Y~ 532 (861)
T 4f3t_A 463 QCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ-------GADSVEPMFRHLKNTY-AGLQLVVVILPG-K-TPVYA 532 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC-------SSSSHHHHHHHHHHHS-TTCCEEEEEESS-S-CTHHH
T ss_pred cccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecC-------chHHHHHHHHHHHhhc-CCCcEEEEEeCC-C-ccHHH
Confidence 25899999999999999999975 43322211 1246788899988765 368999999997 4 68999
Q ss_pred hhhhhcccccCceeeEeecc---cCcHHHHHHHHHHHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCCCCC
Q 005816 589 PWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD 665 (676)
Q Consensus 589 ~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g~~~ 665 (676)
.||++||+++||+||||..+ +.++||++||+||||+||||+||.+.+. ..|.+...+|||||+||+||++|+..
T Consensus 533 ~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~ 609 (861)
T 4f3t_A 533 EVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGK 609 (861)
T ss_dssp HHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----C
T ss_pred HHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCC
Confidence 99999999999999999975 5689999999999999999999998642 23555568999999999999998667
Q ss_pred CCcEEEEEeeC
Q 005816 666 IPSIAAVISFH 676 (676)
Q Consensus 666 ~pSIaavVaS~ 676 (676)
.|||||||||+
T Consensus 610 ~pSiaa~vaS~ 620 (861)
T 4f3t_A 610 KPSIAAVVGSM 620 (861)
T ss_dssp CCEEEEEEEEC
T ss_pred CceEEEEEEEc
Confidence 89999999995
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=4.9e-98 Score=876.69 Aligned_cols=610 Identities=19% Similarity=0.274 Sum_probs=437.8
Q ss_pred ccccccCCCCCCCCCCCEEEEEeeEEEEEecCCC-------------------ceEEEEEEEEEeCCCC---------C-
Q 005816 46 KVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVE-------------------GHFYHYSVSVSYEDGR---------P- 96 (676)
Q Consensus 46 ~~~~~~~~Rp~~Gt~G~~i~l~tN~f~v~~~~~~-------------------~~~y~Y~V~i~~~~~~---------~- 96 (676)
+..+.++.||||||.|++|.|+||||.|.+.... ..||+|+|+|.++..+ +
T Consensus 14 ~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~ 93 (1046)
T 4f1n_A 14 HAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQ 93 (1046)
T ss_dssp CCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC----------------
T ss_pred cccccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCccc
Confidence 3356788999999999999999999999987531 3899999999875321 1
Q ss_pred CCCCcchHHHHHHHHHHH--hhhcCCCCeeeeCCCceEecCCCC---CCceEEEEEecccccccC-CCCCCCCC-CCCCC
Q 005816 97 VDGKGAGRKVIDRVQETY--NAELDGKDFAYDGEKSLFTVGPLP---RNKLEFTVVLEDISSNRN-NGNASPDA-HGSPN 169 (676)
Q Consensus 97 ~~~k~~~r~i~~~~~~~~--~~~~~~~~~~yDG~~~l~s~~~L~---~~~~~~~v~l~~~~~~~~-~~~~~~~~-~~~~~ 169 (676)
...+..+++||..|+++. ...+ +..+||||+++|||..+|| .....|.|..... .+ ..+.+|+. .++..
T Consensus 94 ~~~~~k~~~ii~~ll~e~~~~~~~-~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~ 169 (1046)
T 4f1n_A 94 ELSKPKKYELIEALLDEDEILYKY-RDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQK---KKVVPGMGAPSNKASLQ 169 (1046)
T ss_dssp -CCHHHHHHHHHHHHHSCTTTGGG-TTSEEECSSSEEEESSCGGGSTTCTTCCC--------------------------
T ss_pred ccchhHHHHHHHHHHHhcchhhhc-CCceeecCccceEECCcCCccccCCCceEEecccc---ccccCCccccccccccc
Confidence 123456788888888751 1223 4569999999999999999 3333455554300 00 00000000 00000
Q ss_pred CCccccccCCCCCceEEEEEEeeeeechHHHHHHHcCCCCcc--h---HHHHHHHHHHHhcccccc-cc-eec-cccccC
Q 005816 170 GNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESEN--S---QEAFRVLDIILRQHAAKQ-GC-LLV-RQSFFH 241 (676)
Q Consensus 170 ~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~--~---~~~iq~Lniilr~~~~~~-~~-~~v-g~~ff~ 241 (676)
..+.. ..+.+.|+|+|+++++|++.+|.+|+.|...+. . .+++++|++||.+.+.+. +. ..+ |++||.
T Consensus 170 ~~~~~----~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~ 245 (1046)
T 4f1n_A 170 KKIDP----ELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFI 245 (1046)
T ss_dssp ------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEE
T ss_pred ccccc----cccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCccccc
Confidence 00000 135788999999999999999999999986532 2 678999999999998765 32 344 567887
Q ss_pred CCC-CCcccCCCcEEEeecceEEEEecCCeeEEeeecceeeeecC-----------------CcHHHHHHHhcC------
Q 005816 242 NDP-KNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP-----------------GPVVDFLIANQN------ 297 (676)
Q Consensus 242 ~~~-~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~-----------------~~v~d~l~~~~~------ 297 (676)
.+. ....+||+|+|+|+|||+|||+++++|+||||+++++||+. ++|+|+|.++.+
T Consensus 246 ~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~ 325 (1046)
T 4f1n_A 246 FNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIR 325 (1046)
T ss_dssp CSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhccccccc
Confidence 654 34578999999999999999999999999999999999984 799999887643
Q ss_pred --------CCCCCchhH-------HHHHHHhcceEEEEEecC---------------ceEEEeccCccccccceeecccC
Q 005816 298 --------VRDPFSIDW-------AKAKRTLKNLRIKTITSN---------------QEYKITGLSEKLCKEQMFSLKQK 347 (676)
Q Consensus 298 --------~~~~~~~~~-------~~~~~~Lkgl~V~t~~~~---------------r~~kI~gi~~~~~~~~~F~~~~~ 347 (676)
.+.+...|| .+++++||||+|.++|.+ +.|+|.||+..++.+.+|.++++
T Consensus 326 ~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~ 405 (1046)
T 4f1n_A 326 DIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLES 405 (1046)
T ss_dssp SSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC------
T ss_pred cccccccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCC
Confidence 122333466 789999999999999964 46999999999999999987643
Q ss_pred CC---C-CCCCCccceeeeHHHHHHHhcCcccccCCCCceEEcCCCCCCceecccceeecCCCccCCCCCHHHHHHHHHH
Q 005816 348 NV---K-DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEK 423 (676)
Q Consensus 348 ~~---~-~~~~~~~~~~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~~~~~~ylP~Elc~i~~~Qr~~~kLs~~q~~~mi~~ 423 (676)
+. + +..++ ++.+|||+|||+++|||+|+| |+||||++|+. .+|||||||.|++||+|+++|++ +++||++
T Consensus 406 ~~~~~~~~~~g~-~~~~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKf 479 (1046)
T 4f1n_A 406 SLKKNSAPKPNE-KPININTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDF 479 (1046)
T ss_dssp ------------------CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHH
T ss_pred cccccccccCCc-CceEEEHHHHHHHHhCcccCC-CCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHHH
Confidence 10 0 01111 235899999999999999999 99999999985 38999999999999999999987 4799999
Q ss_pred HhcChHHHHHHHHHHHH-----hcCCCCchhhcccCceecCceeEeeeeecCCCeeecCCCcc----------cCCCCCc
Q 005816 424 SRQKPQERMSVLSNALK-----LSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED----------FSPRNGR 488 (676)
Q Consensus 424 ~~~~P~~R~~~i~~~~~-----~l~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~----------~~p~~g~ 488 (676)
||++|.+|++.|.+... .+.++.+++|++|| +|+.+|++|+||||+||+|.||++.. ..+++|+
T Consensus 480 Aa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~ 558 (1046)
T 4f1n_A 480 SAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGN 558 (1046)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTB
T ss_pred HccCcHHHHHHHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCc
Confidence 99999999999987642 24456788999999 99999999999999999999988642 3467899
Q ss_pred cccCCceecCCCc-cceEEEEEeC-C-c-------ccHHHHHHHHHHHHhhcCCcCCCCc-ccccc------------CC
Q 005816 489 WNFNNKKLVQPTK-IERWAVVNFS-A-R-------CDIRSLVRDLIKCGEMKGILIDQPF-DVFEE------------SP 545 (676)
Q Consensus 489 Wn~~~~kf~~p~~-i~~W~vv~~~-~-~-------~~~~~f~~~l~~~~~~~G~~i~~p~-~v~~~------------~~ 545 (676)
|||++++|++|+. +..|.++++. . + ++++.|++.|.+.|+.+||.+..|. .+... ..
T Consensus 559 Wnm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~ 638 (1046)
T 4f1n_A 559 WNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGR 638 (1046)
T ss_dssp CCCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-------
T ss_pred ccCCCCEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCcccccccccccccccccc
Confidence 9999999999875 5667665442 2 1 2688999999999999999997641 11100 00
Q ss_pred cccCC------------------ChHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec
Q 005816 546 QFRRS------------------SPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP 607 (676)
Q Consensus 546 ~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~ 607 (676)
+.+.. ......+..+..+.++. .+++|||||||+++++++|+.||++||+++||+||||..
T Consensus 639 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~ 717 (1046)
T 4f1n_A 639 GGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVW 717 (1046)
T ss_dssp ---------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEH
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHHhc-CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEeh
Confidence 00000 00012234455555444 367999999998327789999999999999999999997
Q ss_pred c---cCcHHHHHHHHHHHhhccCCceeeccccCCCCCCCcC----CCCeEEEeeeccCCCCCCCCCCcEEEEEeeC
Q 005816 608 M---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVS----KVPTIILGMDVSHGSPGHSDIPSIAAVISFH 676 (676)
Q Consensus 608 ~---k~~~q~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~----~~~tMIiG~DVsHp~~g~~~~pSIaavVaS~ 676 (676)
+ |.++||++||+||||+||||+||.|+.. .++++. ..+|||||+||+|++++ +.+||||||||+
T Consensus 718 ~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~ 788 (1046)
T 4f1n_A 718 DNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSY 788 (1046)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECC
T ss_pred hhhccccHHHHHHHHHHHHHhcCCeeeecccc---ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEE
Confidence 4 5689999999999999999999999743 234332 34799999999995443 256999999995
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=3.1e-58 Score=526.57 Aligned_cols=412 Identities=16% Similarity=0.152 Sum_probs=308.5
Q ss_pred EEEEEeeeeechHHHHHHHcCCCCcchHHHHHHHHHHHhcccccccceeccccccCCCCCCccc-CCCcEEEeecceEEE
Q 005816 186 KVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFAD-VGGGVLGCRGFHSSF 264 (676)
Q Consensus 186 ~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~vg~~ff~~~~~~~~~-l~~g~e~~~Gf~~Sv 264 (676)
.|+|++++++.. .|. .++.+++|+++.+|+.. ...+.++||+||++..+..++ -.+++|+|+||.+||
T Consensus 77 ~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~--~l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi 145 (706)
T 1yvu_A 77 IVELKRVGEEEF-------RGF--QNERECQELFRDFLTKT--KVKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKV 145 (706)
T ss_dssp CEEEEECCCEEC-------CCC--SCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEE
T ss_pred EEEEEEEEEeec-------cCC--CCCHHHHHHHHHHHHHc--CChHhhhCccccCccccccccCCCCcEEEccCeEEEE
Confidence 566999998872 000 14678999999999887 334558999999986543222 246899999999999
Q ss_pred EecC-CeeEEeeecceeeeecCCcHHHHHHHhcCCCCCCchhHHHHHHHhcceEEEEEecCceE--EEecc-Cccccccc
Q 005816 265 RTTQ-GGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEY--KITGL-SEKLCKEQ 340 (676)
Q Consensus 265 r~~~-~~l~LniDvs~~~F~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~~r~~--kI~gi-~~~~~~~~ 340 (676)
+..+ ++++||+|++|+ |.+.+||+|+|.+ ... .+ ..+.++|+|++| +|++| +++..+..
T Consensus 146 ~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~-~~--------------~~~~~~y~n~ty~~riddi~~~~~~P~~ 208 (706)
T 1yvu_A 146 LKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDF-NP--------------KRIRVKPIGIDFVGRVQDVFKAKEKGEE 208 (706)
T ss_dssp EEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCC-CC--------------TTCEEEETTCCCCEEEEEEEESTTSCHH
T ss_pred EeccCCCeEEEEEeeee-ecccchHHHHHHH-hhh-cc--------------hhHHhhcccceeccccCcccccCCCcce
Confidence 9999 999999999999 5899999999988 321 11 135678888999 99998 99888888
Q ss_pred eeecccCCCCCCCCCccceeeeHHHHHHHhcCcc--------cccCCCCceEEcCCCCC-CceecccceeecCCCccCCC
Q 005816 341 MFSLKQKNVKDDDGEVQELEITVYDYFVNNRNID--------LRYSGDLPCINVGKPKR-PTYIPLELCELVSLQRYTKA 411 (676)
Q Consensus 341 ~F~~~~~~~~~~~~~~~~~~iTV~~Yf~~~Y~i~--------L~~~p~lPll~vg~~~~-~~ylP~Elc~i~~~Qr~~~k 411 (676)
+|.. + .++| ||+++|++. .+. +.+|++..+.... +.+++| ||++++
T Consensus 209 ~f~~-g------------~~iS---Yyk~~~~~~q~ll~~r~~~~-~~~~~~v~~~~~~p~~lL~p-lc~~t~------- 263 (706)
T 1yvu_A 209 FFRL-C------------MERS---THKSSKKAWEELLKNRELRE-KAFLVVLEKGYTYPATILKP-VLTYEN------- 263 (706)
T ss_dssp HHHH-H------------HHTC---SSHHHHHHHHHHHHCHHHHH-HCEEEEETTSCEEEGGGEEE-CCCCC--------
T ss_pred EecC-C------------CCcc---eEecccCcchhhhhcccccc-CCceEEeccCCCCCceeecc-ccccCC-------
Confidence 9962 1 3677 998888766 444 5565554432111 344555 776665
Q ss_pred CCHHHHHHHHHHHhcChHHHHHHHHHHHHhcCCCCchhhcccCceecCceeEeeeeecCCCeeecCCCc--ccC-CCCCc
Q 005816 412 LTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFS-PRNGR 488 (676)
Q Consensus 412 Ls~~q~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~--~~~-p~~g~ 488 (676)
|+++|+++|+++++.+|++|++.|+++++.+ ++.|++|||+|+++|++|+||||++|+|.+++|. ... ..+|.
T Consensus 264 Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~ 339 (706)
T 1yvu_A 264 LEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKF 339 (706)
T ss_dssp -----HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHH
T ss_pred CCHHHHHHHHHHHccCHHHHHHHHHHHHHHH----HHHHHHcCCEECCceeecccEEcCCceeecCCCCcceeccCCccc
Confidence 8999999999999999999999999998864 5889999999999999999999999999965443 222 33456
Q ss_pred cccCCceecCCCccce---EEEEEeCCcc-cHHHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHH
Q 005816 489 WNFNNKKLVQPTKIER---WAVVNFSARC-DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQ 564 (676)
Q Consensus 489 Wn~~~~kf~~p~~i~~---W~vv~~~~~~-~~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~ 564 (676)
|++++ +|+.++.++. |+++ +..++ +++.|++.|.+.|+.+||.+..|..+.... ++++.+++.++
T Consensus 340 ~~~~~-~~~~~~~l~~~~lW~~i-~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~---------~~~~~~~~~l~ 408 (706)
T 1yvu_A 340 LELCR-PFVKKDVLSVEIISVSV-YKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILA---------QTREEAKEKLI 408 (706)
T ss_dssp HHHCC-CCCSCSEEEEEEEEEEC------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEEC---------SSTTHHHHHHH
T ss_pred ccccC-ceecccccccceEEEEE-ecchhHHHHHHHHHHHHHHHHcCceecCCccccccc---------hhHHHHHHHHH
Confidence 77665 5778888999 8555 33333 699999999999999999998764332211 23345566655
Q ss_pred hhC--CCCCcEEEEEcCCCC-------CCCchhhhhhhcccccCceeeEeeccc----CcHHHHHHHHHHHhhccCCcee
Q 005816 565 SKL--PGAPQFLLCLLPERK-------NSDLYGPWKRKNLADFGIVTQCMAPMR----VNDQYLTNVLLKINAKLGGLNS 631 (676)
Q Consensus 565 ~~~--~~~~~~vlvIlp~~k-------~~~~Y~~iK~~~~~~~GI~TQci~~~k----~~~q~~~Ni~lKINaKLGG~N~ 631 (676)
+.. ..+++|+|||+|+ + +.+.|+.||++|+ +.||+||||..++ .+.||++||+||||+||||+||
T Consensus 409 ~~~~~~~~~qlvlvIlp~-~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw 486 (706)
T 1yvu_A 409 PVINKIKDVDLVIVFLEE-YPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPY 486 (706)
T ss_dssp HHHTTTSSCSEEEEEEC-----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHhcccCCCcEEEEEECC-ccccccccCccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeee
Confidence 432 2468999999999 6 6889999999976 8999999999753 3579999999999999999999
Q ss_pred eccccCCCCCCCcCCCCeEEEeeeccCCCCCCCCCCcEEEEEeeC
Q 005816 632 LLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVISFH 676 (676)
Q Consensus 632 ~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g~~~~pSIaavVaS~ 676 (676)
.|+. | ...+|||||+||+||+.+. +.|||||+|||+
T Consensus 487 ~L~~------~--~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~ 522 (706)
T 1yvu_A 487 KLKE------I--EGKVDAFVGIDISRITRDG-KTVNAVAFTKIF 522 (706)
T ss_dssp EESC------C--TTCCSEEEEECEEECCCSS-SCCCEEEEEEEE
T ss_pred eecc------C--CCCceEEEEEEEeccCCCC-CCceEEEEEEEE
Confidence 9963 2 1368999999999997543 369999999984
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=6.9e-54 Score=490.14 Aligned_cols=494 Identities=13% Similarity=0.082 Sum_probs=334.5
Q ss_pred EEEEEeeEEEEEec-CCCceEEEEEEEEEeCCCCCCCCCcchHHHHHHHHHHHhhhcCCCCeeeeCCCc--eEecCCCCC
Q 005816 63 RISLLTNHFKVNVT-NVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKS--LFTVGPLPR 139 (676)
Q Consensus 63 ~i~l~tN~f~v~~~-~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~~~~~~~~~~~~~~~~yDG~~~--l~s~~~L~~ 139 (676)
++.|.+|||+|... .|+ .+|||+|+| +|+++.+ ++..++..+.+. + | .++|||. . ||++++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~----~p~~~~~-~~~~~~~~~~~~----~-g-~~~fdg~-~~~l~~~~~l~~ 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFN----DPEEELQ-KEGYSIYRLAYE----N-V-GIVIDPE-NLIIATTKELEY 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHHH----T-T-EEEEETT-TTEEEESSCCCC
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeec----CChHHHH-HHHHHHHHHHhh----c-C-cEEecCc-ceeeeccceecc
Confidence 57899999999852 466 899999999 5567766 666677666543 3 4 8899998 6 999998861
Q ss_pred CceEEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeechHHHHHHHcCCCCcchHHHHHHH
Q 005816 140 NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVL 219 (676)
Q Consensus 140 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~iq~L 219 (676)
++..+.|+++.++.++ +|++
T Consensus 70 -----------------------------------------~~~~~~~~~~~~~~~~-------------------~~~~ 89 (771)
T 1u04_A 70 -----------------------------------------EGEFIPEGEISFSELR-------------------NDYQ 89 (771)
T ss_dssp -----------------------------------------SSCCEEEEEECGGGSC-------------------HHHH
T ss_pred -----------------------------------------CCCeEEEEEEEcceec-------------------HHHH
Confidence 1335677777666654 6899
Q ss_pred HHHHhccccccc-----ceeccccccCCCCCCcccCCCcEEEeecceEEEEecCCeeEEeeecceeeeecCCcHHHHHHH
Q 005816 220 DIILRQHAAKQG-----CLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294 (676)
Q Consensus 220 niilr~~~~~~~-----~~~vg~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~~~l~LniDvs~~~F~~~~~v~d~l~~ 294 (676)
|+|+|..+...+ ...+||+||++ ..+ +.+.+|+||.+||+..+++++|++|++|++ .+.+||+|+|.+
T Consensus 90 n~i~r~~l~~~~~~~~~l~~~~r~~~~~-----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~ 162 (771)
T 1u04_A 90 SKLVLRLLKENGIGEYELSKLLRKFRKP-----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNK 162 (771)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHTTTSCC-----EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTT
T ss_pred HHHHHHHHHHcccchHHHHHHhhhcCCC-----ccc-cccEEEECceeeEEecCCceEEEEEeeeeE-eehhHHHHHHHH
Confidence 999999998877 67889999987 122 468999999999999999999999999999 699999999975
Q ss_pred hcCCCCCCchhHHHHHHHhcceEEEEE--------e--cCceEEEeccCccccccc--ee---ecccCCCCCCCCCccce
Q 005816 295 NQNVRDPFSIDWAKAKRTLKNLRIKTI--------T--SNQEYKITGLSEKLCKEQ--MF---SLKQKNVKDDDGEVQEL 359 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~Lkgl~V~t~--------~--~~r~~kI~gi~~~~~~~~--~F---~~~~~~~~~~~~~~~~~ 359 (676)
..+ ....+.....|..|.+. | ++++|++++ +++..+.. +| +.+.+ ..
T Consensus 163 ~~~-------~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~----------~~ 224 (771)
T 1u04_A 163 DPK-------ELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERY----------WN 224 (771)
T ss_dssp CHH-------HHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHH----------CC
T ss_pred HHH-------HHHHHHHhccCcEEeeeccccceeEeecccceeecCC-ccccCCCChhheeceeecCC----------CC
Confidence 421 23455667788877777 7 788888876 65544444 45 53320 02
Q ss_pred eeeHHHHHHHhcCcccccCCCCceEEcCC-------CCCCceecccceeecCCCccCCCCCHHHHHHHHHHHhcChHHHH
Q 005816 360 EITVYDYFVNNRNIDLRYSGDLPCINVGK-------PKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERM 432 (676)
Q Consensus 360 ~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~-------~~~~~ylP~Elc~i~~~Qr~~~kLs~~q~~~mi~~~~~~P~~R~ 432 (676)
++++.+||+++|++ ++ .+||+|.... ..+.+||.||||.++|. .-+++....++|..+++..|++|.
T Consensus 225 ~~~~~~~y~~~y~i--~d-~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG~---~~~~~~~~MK~la~~trl~P~~R~ 298 (771)
T 1u04_A 225 TPEAKLEFYRKFGQ--VD-LKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYN---AEQLESDVAKEILEYTKLMPEERK 298 (771)
T ss_dssp SHHHHHHHHHHHCS--CC-TTSCEEEEEESCC-----CCCEEECTTTEEEEEE---GGGC----CCHHHHHHCCCHHHHH
T ss_pred CcchhHHHHHhcCc--Cc-CCCCeEEecchhhccCCCCceeeechHhhhhcCc---hhhhhHHHHHHHHHHHCCCHHHHH
Confidence 56778888899995 77 9999998742 23579999999999993 233455566799999999999999
Q ss_pred HHHHHHHHhc-----CCC--CchhhcccCceecCceeEeeeeecCCCeeecCCCcccCCCCCccc--cCCceecCCCc--
Q 005816 433 SVLSNALKLS-----KYD--NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWN--FNNKKLVQPTK-- 501 (676)
Q Consensus 433 ~~i~~~~~~l-----~~~--~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~~~p~~g~Wn--~~~~kf~~p~~-- 501 (676)
+.|.++++.+ .-+ ....|+.|| .++.. +.|.++++.+-.+.+++ ...+..+.|. +++.+++.+..
T Consensus 299 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~--~~~~~~adW~~~~~~~~~~~~~~~p 374 (771)
T 1u04_A 299 ELLENILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLN--VQKSQLLLWTNYSRKYPVILPYEVP 374 (771)
T ss_dssp HHHHHHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC----------CGGGGSCCCCCCCCSBCC
T ss_pred HHHHHHHHHhhhhhhcCCHHHHHHHhhhh-ccCcC-cccccccccccceeecC--cCCCccCCcchhhCCCcceecccch
Confidence 9999999998 322 245677777 57766 78777766665555554 1224568995 67777765543
Q ss_pred --cc------eEEEEEeCCcccHHHHH---------HHHHHHHhhcCCc---------CCCCccccccCCcccC--CChH
Q 005816 502 --IE------RWAVVNFSARCDIRSLV---------RDLIKCGEMKGIL---------IDQPFDVFEESPQFRR--SSPV 553 (676)
Q Consensus 502 --i~------~W~vv~~~~~~~~~~f~---------~~l~~~~~~~G~~---------i~~p~~v~~~~~~~~~--~~~~ 553 (676)
++ .|++++-.....+++|+ +.|.++++.+|+. ++-|.......+..-. -...
T Consensus 375 ~~l~~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~ 454 (771)
T 1u04_A 375 EKFRKIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSD 454 (771)
T ss_dssp THHHHCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSH
T ss_pred hhhhcccccceEEEEeCCchHHHHHHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccch
Confidence 44 47776544334678887 4455544333332 3323210000000000 0113
Q ss_pred HHHHHHHHHHHhhC-CCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecccC-------c-----HHHHHHHHH
Q 005816 554 VRVEKMFDEIQSKL-PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV-------N-----DQYLTNVLL 620 (676)
Q Consensus 554 ~~~~~~~~~l~~~~-~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k~-------~-----~q~~~Ni~l 620 (676)
++++.+++.+.+.+ ...++|+||+++..++.+.|+.||++| .+.||+||||..++. + .++++||+|
T Consensus 455 ~~i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIal 533 (771)
T 1u04_A 455 KGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLF 533 (771)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHH
Confidence 46777888876654 245799877775425678999999998 689999999997432 2 678999999
Q ss_pred HHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCCCCCCCcEEEEEee
Q 005816 621 KINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVISF 675 (676)
Q Consensus 621 KINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g~~~~pSIaavVaS 675 (676)
|||+||||+||.|+. |. .+|||||+||+|+++++ ..+|+||+|+|
T Consensus 534 qIn~KLGG~pW~L~~------p~---~~tmiIGiDV~H~~~~~-~svs~~A~V~s 578 (771)
T 1u04_A 534 QVLSKLGVKYYVLDY------RF---NYDYIIGIDVAPMKRSE-GYIGGSAVMFD 578 (771)
T ss_dssp HHHHHTTCBCCEESC------CC---SSSEEEEEEEEEECCTT-TCEEEEEEEEE
T ss_pred HHHHHhCCcceeecC------CC---CCEEEEEEEEEcCCCCC-CceEEEEEEEC
Confidence 999999999999962 32 68999999999997553 47888999876
No 5
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1.3e-43 Score=398.88 Aligned_cols=470 Identities=14% Similarity=0.151 Sum_probs=332.3
Q ss_pred EEEEEeeEEEEEe-cCCCceEEEEEEEEEeCCCCCCCCCcchHHHHHHHHHHHhhhcCCCCeeeeCCCceEecCCCCCC-
Q 005816 63 RISLLTNHFKVNV-TNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRN- 140 (676)
Q Consensus 63 ~i~l~tN~f~v~~-~~~~~~~y~Y~V~i~~~~~~~~~~k~~~r~i~~~~~~~~~~~~~~~~~~yDG~~~l~s~~~L~~~- 140 (676)
.+.|.-|-|.|+- ...+..+|.|+|.+.+.++ ++.-..++.+++.. + |...+==|. .|.|.++ |..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~-~~~~~~~~~-~~~~~~~-~~~~ 73 (685)
T 3ho1_A 6 KTEVFLNRFALRPLNPEELRPWRLEVVLDPPPG-----REEVYPLLAQVARR----A-GGVTVRMGD-GLASWSP-PEVL 73 (685)
T ss_dssp CEEEEEEEEEEEECCTTTSSCEEEEEEEESCCC-----TTTHHHHHHHHHHH----T-CSSEEEETT-EEEESSC-TTTS
T ss_pred ceeEEEeeeecccCChhhCceeEEEEecCCCCC-----cchHHHHHHHHHHH----h-CCeEEeecC-ceecccC-chhh
Confidence 4789999999983 3456889999999965322 22234556566543 2 323333344 7888776 532
Q ss_pred ceEEEEEecccccccCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeeeeechHHHHHHHcCCCCcchHHHH----
Q 005816 141 KLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAF---- 216 (676)
Q Consensus 141 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~i---- 216 (676)
.+|-.|.- ..++..|.+.-.-...++..+=. ..+++
T Consensus 74 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 113 (685)
T 3ho1_A 74 VLEGTLAR------------------------------MGQTYAYRLYPKGRRPLDPKDPG----------ERSVLSALA 113 (685)
T ss_dssp CCEEEEEC------------------------------SSCEEEEEEEEEEECCCCTTSHH----------HHHHHHHHH
T ss_pred hccchhcc------------------------------ccCCcceeeeecccccCCCCChH----------HHHHHHHHH
Confidence 12322210 11345677777666777764321 12233
Q ss_pred -HHHHHHHhcccccccceeccccccCCCCCCcccCCCcEEEeecceEEEEecC-CeeEEeeecceeeeecCCcHHHHHHH
Q 005816 217 -RVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQ-GGLSLNIDVSTTMIIQPGPVVDFLIA 294 (676)
Q Consensus 217 -q~Lniilr~~~~~~~~~~vg~~ff~~~~~~~~~l~~g~e~~~Gf~~Svr~~~-~~l~LniDvs~~~F~~~~~v~d~l~~ 294 (676)
..|+-.|++. . +...-|.-.+... + .-|.|.++.+|+...|.++. +++.|.||..+.. +++.++.++|.+
T Consensus 114 ~~~~~~~~~~~-~--~~~~~~~~~~~~~-~---~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~-~~~~~~~~~l~~ 185 (685)
T 3ho1_A 114 RRLLQERLRRL-E--GVWVEGLAVYRRE-H---ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRI-LCEMSLEAWLAQ 185 (685)
T ss_dssp HHHHHHHHHTC-S--SSEEETTEEEEEE-E---EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEE-EECSCHHHHHHH
T ss_pred HHHHHHHHHhh-h--ceEEccEEEEeec-C---CCCCceEEecceEEEEEECCCCcEEEEEeeheee-cChhhHHHHHHh
Confidence 4455566655 2 2222222222211 1 12789999999999999997 9999999999996 899999999987
Q ss_pred hcCCCCCCchhHHHHHHHhcceEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCcc
Q 005816 295 NQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNID 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~~Yf~~~Y~i~ 374 (676)
.. . |- .+|.++|+.++|+|.+|+ +.+++..|-.. .||++|||+++|.+
T Consensus 186 ~~--------------~-~~-~~v~~~y~~~~~~~~~~~-~~~p~~~~l~~--------------~~s~~~y~~~k~~~- 233 (685)
T 3ho1_A 186 GH--------------P-LP-KRVRNAYDRRTWELLRLG-EEDPKELPLPG--------------GLSLLDYHASKGRL- 233 (685)
T ss_dssp SC--------------C-CC-SEEEESSSCCEECCCEEE-CCCTTCC--------------------CSTTTTTTTSTT-
T ss_pred CC--------------C-cc-HHHhhhcccceEEEeecc-cCCchheecCC--------------CccHHHHHhhcccc-
Confidence 43 1 34 689999999999999998 56677777532 59999999999988
Q ss_pred cccCCCCceEEc-CCC---CC-----CceecccceeecCCCccCCCCCHHHHHHHHHHHhcChHHHHHHHHHHHHhcCCC
Q 005816 375 LRYSGDLPCINV-GKP---KR-----PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYD 445 (676)
Q Consensus 375 L~~~p~lPll~v-g~~---~~-----~~ylP~Elc~i~~~Qr~~~kLs~~q~~~mi~~~~~~P~~R~~~i~~~~~~l~~~ 445 (676)
+. -++|+|+. .+. .+ ..||.|||| +++ |++.+++ .+++..|++|++.+.++++.
T Consensus 234 -~~-~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~-------l~~~~~~---~~trlsP~~R~~~l~~~~~~---- 296 (685)
T 3ho1_A 234 -QG-REGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LED-------LHEEEGS---LALSLPWEERRRRTREIASW---- 296 (685)
T ss_dssp -TT-SCCCSEEEECSCC---CCEEEETTSEEEECC-TTT-------TSSCSSC---CCCCCCHHHHHHHHHHHHHH----
T ss_pred -cc-cCCceEEEEeccccCCCcceeeeeeechHhH-HHH-------Hhhhhhh---ccccCCHHHHHHHHHHHHHH----
Confidence 87 89998864 331 22 358999999 776 5555443 67899999999999998775
Q ss_pred CchhhcccCceecCceeEeeeeecCCCeeecCCCcccCCCCCccccCCceecCCCccceEEEEEeCCc-ccHHHHHHHHH
Q 005816 446 NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-CDIRSLVRDLI 524 (676)
Q Consensus 446 ~~~~L~~~Gi~I~~~~~~V~gRvL~~P~i~~g~~~~~~p~~g~Wn~~~~kf~~p~~i~~W~vv~~~~~-~~~~~f~~~l~ 524 (676)
+++.|||+ +++|++|+||+||||+| +|+.. + .+.|++.+.+|+.++.. .|+++++... ..++.|++.|.
T Consensus 297 ---i~~~~Gl~-~~~~i~v~gRvLppp~I-~g~~~-~---~~~~d~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L~ 366 (685)
T 3ho1_A 297 ---IGRRLGLG-TPEAVRAQAYRLSIPKL-MGRRA-V---SKPADALRVGFYRAQET-ALALLRLDGAQGWPEFLRRALL 366 (685)
T ss_dssp ---HHHTTCSC-CCEEEEEEEEECCCCCE-ESSSB-C---SSGGGHHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHHH
T ss_pred ---HHHhcCCC-CCCcceEEEEEcCHHHh-cCCCC-c---CCchhhccCcceeccCc-eEEEEeccCchHHHHHHHHHHH
Confidence 47889999 99999999999999999 77542 2 24566666678887765 7999998764 47889999999
Q ss_pred HHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeE
Q 005816 525 KCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQC 604 (676)
Q Consensus 525 ~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQc 604 (676)
+.|+.+||.|..|... +.+.. ...+...++.+.+ .++|+||||+|+ ++.+.|+.||++| .+.||+|||
T Consensus 367 ~va~~~G~~i~~~~~~--~~~~d-----~~~~~~~l~~~~~---~~~qlvvvIlp~-~~~~~y~~IKk~~-~~~GIpTQc 434 (685)
T 3ho1_A 367 RAFGASGASLRLHTLH--AHPSQ-----GLAFREALRKAKE---EGVQAVLVLTPP-MAWEDRNRLKALL-LREGLPSQI 434 (685)
T ss_dssp HHHHSSSSCEEEEECC--CCGGG-----THHHHHHHHHHHH---TTCCEEEEEESC-CCHHHHHHHHHHH-HHTTCCEEE
T ss_pred HHHHhCCcEeccceee--cCCCc-----hHHHHHHHHHhhh---cCCCEEEEEECC-CCccHHHHHHHHH-hcCCCccEE
Confidence 9999999999864321 11110 1123344555544 468999999999 7788999999986 699999999
Q ss_pred ee-c-ccCcHHHHHHHHHHHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCCCCCCCcEEEEEe
Q 005816 605 MA-P-MRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVIS 674 (676)
Q Consensus 605 i~-~-~k~~~q~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g~~~~pSIaavVa 674 (676)
|. . .+.+.++++||+||||+||||+||.|+. |. .+|||||+||+|++.. ..+++|++++
T Consensus 435 V~~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tmiIGiDVsH~~~~--~~~~~aav~~ 495 (685)
T 3ho1_A 435 LNVPLREEERHRWENALLGLLAKAGLQVVALSG------AY---PAELAVGFDAGGRESF--RFGGAACAVG 495 (685)
T ss_dssp EESSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSEEEEEEEEETTEE--EEEEEEEEEC
T ss_pred EecccccccHhHHHHHHHHHHHHhCCeeEEecC------CC---CCeEEEEEEEEcCCCC--ccceEEEEEE
Confidence 99 2 2456788999999999999999999963 43 6899999999998732 2445555554
No 6
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=99.97 E-value=3.6e-32 Score=292.98 Aligned_cols=174 Identities=26% Similarity=0.412 Sum_probs=136.1
Q ss_pred cCCceecC-CCccceEEEEEeCCc---ccHHHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhh
Q 005816 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (676)
Q Consensus 491 ~~~~kf~~-p~~i~~W~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 566 (676)
+++++|++ ++++++|++++++.+ .++++|++.|.+.|+.+||.++.|....... ...+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~---~~~~~~~~~--~~~~~~~~ 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM---SVPGSEKEF--FAKVKELM 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE---ECCSSHHHH--HHHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceec---CCCchHHHh--HHHHhhcc
Confidence 56789999 689999999999543 3799999999999999999998875321110 011111222 22333221
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCcHH--HHHHHHHHHhhccCCceeeccccCCCCC
Q 005816 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQ--YLTNVLLKINAKLGGLNSLLAVEHSPSI 641 (676)
Q Consensus 567 ~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q--~~~Ni~lKINaKLGG~N~~l~~~~~~~~ 641 (676)
.+++|+|||+|+ ++.++|+.||++||+++||+||||..+ +.++| |++||+||||+||||+||.|+. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~----~~ 149 (388)
T 2yha_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (388)
T ss_dssp --HTCSEEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----CC
T ss_pred --CCCeEEEEEECC-CChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccc----cc
Confidence 368999999998 878899999999999999999999975 45778 9999999999999999999974 35
Q ss_pred CCcCCCCeEEEeeeccCCC---CC--CCCCCcEEEEEeeC
Q 005816 642 PIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVISFH 676 (676)
Q Consensus 642 p~~~~~~tMIiG~DVsHp~---~g--~~~~pSIaavVaS~ 676 (676)
|++.+.+|||||+||+||+ || ....|||||||||+
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~ 189 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTI 189 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECC
T ss_pred cccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEc
Confidence 6566689999999999999 87 33589999999995
No 7
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=99.97 E-value=3.3e-31 Score=289.11 Aligned_cols=174 Identities=26% Similarity=0.412 Sum_probs=135.7
Q ss_pred cCCceecC-CCccceEEEEEeCCc---ccHHHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhh
Q 005816 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (676)
Q Consensus 491 ~~~~kf~~-p~~i~~W~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 566 (676)
+++++|++ ++++++|++++++.+ ..++.|++.|.+.|+.+||.+..|....... ...+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~---~~~~~~~~~--~~~~~~~~ 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM---SVPGSEKEF--FAKVKELM 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE---ECCSSHHHH--HHHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceec---CCCchHHHH--HHHHhhcc
Confidence 46789999 689999999999532 3799999999999999999998875321110 011111222 22333321
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCcHH--HHHHHHHHHhhccCCceeeccccCCCCC
Q 005816 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQ--YLTNVLLKINAKLGGLNSLLAVEHSPSI 641 (676)
Q Consensus 567 ~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q--~~~Ni~lKINaKLGG~N~~l~~~~~~~~ 641 (676)
.+++|+|||+|+ ++.++|+.||++||+++||+||||..+ +.++| |++||+||||+||||+||.|+. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~~ 149 (437)
T 2yhb_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (437)
T ss_dssp --HTCSEEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----CC
T ss_pred --CCCcEEEEEECC-CChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccc----cc
Confidence 368999999998 878899999999999999999999975 45778 9999999999999999999974 35
Q ss_pred CCcCCCCeEEEeeeccCCC---CC--CCCCCcEEEEEeeC
Q 005816 642 PIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVISFH 676 (676)
Q Consensus 642 p~~~~~~tMIiG~DVsHp~---~g--~~~~pSIaavVaS~ 676 (676)
|++.+.+|||||+||+||+ || ....|||||||||+
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~ 189 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTI 189 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECC
T ss_pred cccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEec
Confidence 6566689999999999999 87 23589999999995
No 8
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.95 E-value=2.8e-28 Score=226.43 Aligned_cols=131 Identities=19% Similarity=0.363 Sum_probs=91.8
Q ss_pred ecCCcHHHHHHHhcCCC---CCC--chhHHHHHHHhcceEEEEEe------cCceEEEeccCccccccceeecccCCCCC
Q 005816 283 IQPGPVVDFLIANQNVR---DPF--SIDWAKAKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSLKQKNVKD 351 (676)
Q Consensus 283 ~~~~~v~d~l~~~~~~~---~~~--~~~~~~~~~~Lkgl~V~t~~------~~r~~kI~gi~~~~~~~~~F~~~~~~~~~ 351 (676)
+++++|+|||.++.+.. +.. +.++.+++++|+|++|.++| ++|+|+|.||++.++++++|+.++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~g----- 76 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDG----- 76 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESSS-----
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcCC-----
Confidence 57899999999976321 111 22356789999999999999 679999999999999999997631
Q ss_pred CCCCccceeeeHHHHHHHhcCcccccCCCCceEEcCCCCCCceecccceeecCCCccCCCCCHHHHHHHHHHHhcC
Q 005816 352 DDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQK 427 (676)
Q Consensus 352 ~~~~~~~~~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~~~~~~ylP~Elc~i~~~Qr~~~kLs~~q~~~mi~~~~~~ 427 (676)
.+|||+|||+++ |++|+| |+||||++|.+.+++|||||||.|++||+|+++|++.|+++||++|+++
T Consensus 77 -------~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 77 -------KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp -------CEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred -------CEEEHHHHHHHc-CCCCCC-CCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhcC
Confidence 489999999998 999999 9999999999889999999999999999999999999999999999863
No 9
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.94 E-value=2.3e-27 Score=219.44 Aligned_cols=132 Identities=34% Similarity=0.554 Sum_probs=112.4
Q ss_pred CceecCCCccceEEEEEeCCc---ccHHHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhhCCC
Q 005816 493 NKKLVQPTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPG 569 (676)
Q Consensus 493 ~~kf~~p~~i~~W~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 569 (676)
+++|++|+++++|++++|+++ .++++|++.|.+.|+.+||.+.+|..+.... ...++++.+++++.+.+ .
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~------~~~~~~e~~l~~~~~~~-~ 74 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFIS------CPPEHIEEALLDIHKRA-P 74 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEE------CCGGGHHHHHHHHHHHC-T
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeec------CCchhHHHHHHHHHHhc-C
Confidence 579999999999999999643 3799999999999999999998765332110 11357788898888876 4
Q ss_pred CCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCcHHHHHHHHHHHhhccCCceeec
Q 005816 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLL 633 (676)
Q Consensus 570 ~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~N~~l 633 (676)
+++|+|||+|+ ++.+ |+.||++||+++||+|||+..+ |.++||++||+||||+||||+||.|
T Consensus 75 ~~qlv~~ilp~-~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 75 GLQLLIVILPD-VTGS-YGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp TCSEEEEECCS-SSSC-HHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCcEEEEEECC-CCCc-HHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 68999999999 7677 9999999999999999999984 5689999999999999999999975
No 10
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.94 E-value=1.1e-26 Score=216.99 Aligned_cols=138 Identities=30% Similarity=0.523 Sum_probs=109.9
Q ss_pred CceecCCCccceEEEEEeCCcc---cHHHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhhC--
Q 005816 493 NKKLVQPTKIERWAVVNFSARC---DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKL-- 567 (676)
Q Consensus 493 ~~kf~~p~~i~~W~vv~~~~~~---~~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 567 (676)
+++|++|+++++|++++|++.. .+++|++.|.+.|+.+||.+.+|..+.... .+....+..++..++++.+++
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 79 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVS--ARPEQVEKVLKTRYHDATSKLSQ 79 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEE--CCGGGHHHHHHHHHHHHHHTSST
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccC--CChHHHHHHHHHHHHHHHhhccc
Confidence 5789999999999999998653 588899999999999999998876542211 011111223444444554433
Q ss_pred CCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCcHHHHHHHHHHHhhccCCceeec
Q 005816 568 PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLL 633 (676)
Q Consensus 568 ~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~N~~l 633 (676)
..+++|+|||+|+ ++.++|+.||++||+++||+|||+..+ |.++||++||+||||+||||+||.|
T Consensus 80 ~~~~~lv~~il~~-~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 80 GKEIDLLIVILPD-NNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp TCCCCEEEEEECS-SCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCCCeEEEEEeCC-CCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 2478999999999 888999999999999999999999985 4689999999999999999999975
No 11
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.93 E-value=1.5e-26 Score=216.95 Aligned_cols=139 Identities=28% Similarity=0.430 Sum_probs=99.1
Q ss_pred CceecCCCccceEEEEEeCCc----ccHHHHHHHHHHHHhhcCCcCCCCccccccCC-cccCC-ChHHHHHHHHHHHHhh
Q 005816 493 NKKLVQPTKIERWAVVNFSAR----CDIRSLVRDLIKCGEMKGILIDQPFDVFEESP-QFRRS-SPVVRVEKMFDEIQSK 566 (676)
Q Consensus 493 ~~kf~~p~~i~~W~vv~~~~~----~~~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~-~~~~~-~~~~~~~~~~~~l~~~ 566 (676)
+++|++|+++++|++++|++. .++++|++.|.+.|+.+||.+++|..+..... ...+. ..+..++.++++++++
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 578999999999999999764 27899999999999999999998875432110 01111 1123466677777766
Q ss_pred CC-CCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCcHHHHHHHHHHHhhccCCceeec
Q 005816 567 LP-GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLL 633 (676)
Q Consensus 567 ~~-~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~N~~l 633 (676)
.+ ..|+|+|||||+ ++ +.|+.||++||+++||+|||+..+ |.++||++||+||||+||||+||.|
T Consensus 82 ~~~~~pqlv~~ilp~-~~-~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 82 HGGARPTLVLCAMSR-KD-DGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TTTCCCCEEEEEESS-CC-THHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCcEEEEEECC-CC-ccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 54 367999999999 65 459999999999999999999974 5789999999999999999999975
No 12
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.93 E-value=4.2e-26 Score=210.81 Aligned_cols=130 Identities=29% Similarity=0.473 Sum_probs=108.1
Q ss_pred CCceecCCCccceEEEEEeCCc-----ccHHHHHHHHHHHHhhcCCcCCCCccccccCCcccCCChHHHHHHHHHHHHhh
Q 005816 492 NNKKLVQPTKIERWAVVNFSAR-----CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (676)
Q Consensus 492 ~~~kf~~p~~i~~W~vv~~~~~-----~~~~~f~~~l~~~~~~~G~~i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 566 (676)
++++|++|+++++|++++|+.+ ..+++|++.|.+.|+.+||.+..|..+... .+..++++.+|+++++.
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~------~~~~~~v~~~~~~l~~~ 74 (138)
T 3luc_A 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKY------AQGADSVEPMFRHLKNT 74 (138)
T ss_dssp --CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEE------CCSGGGHHHHHHHHHHH
T ss_pred CcCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeec------CCcHHHHHHHHHHHHhc
Confidence 3678999999999999999742 269999999999999999999864432221 11236889999999886
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc---cCcHHHHHHHHHHHhhccCCce
Q 005816 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLN 630 (676)
Q Consensus 567 ~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~N 630 (676)
. .+++|+|||||+ ++++|+.||++||+++||+|||+..+ |.++||++||+||||+||||+|
T Consensus 75 ~-~~~qlv~~ilp~--~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 75 Y-AGLQLVVVILPG--KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp C-TTCCEEEEEECS--SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred C-CCCcEEEEEECC--CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 5 368999999997 47899999999999999999999874 5689999999999999999987
No 13
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.92 E-value=2.9e-26 Score=214.38 Aligned_cols=135 Identities=19% Similarity=0.283 Sum_probs=94.2
Q ss_pred cCCcHHHHHHHhcCCCCCCchhHHHHHHHhcceEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeH
Q 005816 284 QPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITV 363 (676)
Q Consensus 284 ~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV 363 (676)
+++||+|||.+..+. +..+..+.++++.|+|++|.|.|+||+|+|+||++.++++++|+.+++ .++||
T Consensus 1 r~~tvld~~~~~~~~-~~~~~~~~~~~~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~g-----------~~~T~ 68 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQ-TEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----------SEVSF 68 (150)
T ss_dssp CCCBHHHHHHHHHHH-SCHHHHHHHHHHHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSSS-----------CCCCH
T ss_pred CCccHHHHHHHHHcc-ccchHHHHHHHHHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCCC-----------ceeeH
Confidence 578999999886532 111224678999999999999999999999999999999999986432 47999
Q ss_pred HHHHHHhcCcccccCCCCceEEcCCCC---------CCceecccceeecCCCccCCCCCHHHHHH------HHHHHhcCh
Q 005816 364 YDYFVNNRNIDLRYSGDLPCINVGKPK---------RPTYIPLELCELVSLQRYTKALTNLQRAS------LVEKSRQKP 428 (676)
Q Consensus 364 ~~Yf~~~Y~i~L~~~p~lPll~vg~~~---------~~~ylP~Elc~i~~~Qr~~~kLs~~q~~~------mi~~~~~~P 428 (676)
+|||+++|||+|+| |+||||.+|..+ +++|||||||.|+| |++.|+++ |+++++++|
T Consensus 69 ~eYf~~~Y~i~i~~-~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~~-------L~d~~rs~~~~mk~l~~~t~~~P 140 (150)
T 2xfm_A 69 LEYYRKQYNQEITD-LKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRNDFNVMKDLAVHTRLTP 140 (150)
T ss_dssp HHHHHTTCCCCCCC-SSSCEEEECSSCTTCCSSCSSCCEEECGGGEEECS-------TTC--------------------
T ss_pred HHHHHHHcCCccCC-CCCCeEEecccccccccccccceEEecHHHhccCC-------CCHHHHhhHHHHHHHHHHHccCH
Confidence 99999999999999 999999997642 67999999999996 79999884 999999999
Q ss_pred HHHHHHHHHH
Q 005816 429 QERMSVLSNA 438 (676)
Q Consensus 429 ~~R~~~i~~~ 438 (676)
++|++.|.++
T Consensus 141 ~~R~~~i~~f 150 (150)
T 2xfm_A 141 EQRQREVGRL 150 (150)
T ss_dssp ----------
T ss_pred HHHHHHHhcC
Confidence 9999987653
No 14
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.91 E-value=5e-25 Score=204.11 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=89.5
Q ss_pred cCCcHHHHHHHhcCCCCCCchhHHHHHHHhcceEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeH
Q 005816 284 QPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITV 363 (676)
Q Consensus 284 ~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV 363 (676)
|.+||+|+|.+.... + ....+.++++.|+|+.|.|.|+|+.|+|+||+|+.++..+|+.+++ .++||
T Consensus 1 r~~tvld~m~~~~~~-~-~~~~~~~~~k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg-----------~~iT~ 67 (148)
T 3qir_A 1 RNDCVLDVMHAIYQQ-N-KEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDG-----------KEITF 67 (148)
T ss_dssp -CCCHHHHHHHHHHH-H-HHHHHHHHHHHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTTS-----------CEEEH
T ss_pred CcchHHHHHHHHHhh-C-cHHHHHHHHHHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCCC-----------CcccH
Confidence 467999999875321 1 1224678999999999999999999999999999999999987542 48999
Q ss_pred HHHHHHhcCcccccCCCCceEEcCCCC----------CCceecccceeecCCCccCCCCCHHHHH------HHHHHHhcC
Q 005816 364 YDYFVNNRNIDLRYSGDLPCINVGKPK----------RPTYIPLELCELVSLQRYTKALTNLQRA------SLVEKSRQK 427 (676)
Q Consensus 364 ~~Yf~~~Y~i~L~~~p~lPll~vg~~~----------~~~ylP~Elc~i~~~Qr~~~kLs~~q~~------~mi~~~~~~ 427 (676)
+|||+++|||+|+| ++||||.++.++ +++|||||||.++| |++.|++ +|++++++.
T Consensus 68 ~eYf~~kY~i~I~~-~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~ltg-------Ltd~~r~d~~~mk~l~~~tr~~ 139 (148)
T 3qir_A 68 LEYYSKNYGITVKE-EDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMTG-------IPEKMKKDFRAMKDLAQQINLS 139 (148)
T ss_dssp HHHHHHHHCCCCSC-TTCCEEEECCTTCCCC---CCSCCEEECGGGEECC------------------------------
T ss_pred HHHHHHHcCCeecC-CCCceEEeecccccCCCCCCccceeeecHHHhhhcC-------CCHHHHhhhHHHHHHHHHHCCC
Confidence 99999999999999 999999997542 57999999999997 7888887 799999999
Q ss_pred hHHHHHHH
Q 005816 428 PQERMSVL 435 (676)
Q Consensus 428 P~~R~~~i 435 (676)
|++|++.|
T Consensus 140 P~~R~~~l 147 (148)
T 3qir_A 140 PKQHHSAL 147 (148)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 99999865
No 15
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.90 E-value=3.5e-24 Score=193.01 Aligned_cols=113 Identities=20% Similarity=0.428 Sum_probs=92.6
Q ss_pred cCCcHHHHHHHhcCCCC-----CCchhHHHHHHHhcceEEEEEe------cCceEEEeccCccccccceeecccCCCCCC
Q 005816 284 QPGPVVDFLIANQNVRD-----PFSIDWAKAKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSLKQKNVKDD 352 (676)
Q Consensus 284 ~~~~v~d~l~~~~~~~~-----~~~~~~~~~~~~Lkgl~V~t~~------~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~ 352 (676)
++++|+|||.+.....+ ..+.++.+++++|+|++|.++| ++|+|+|.||++.+|++++|+.+ +
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~--g---- 74 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD--G---- 74 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCGGGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESS--S----
T ss_pred CCccHHHHHHHHhhhcccccccCCHHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeC--C----
Confidence 46899999999653211 1134578999999999999998 46899999999999999999863 1
Q ss_pred CCCccceeeeHHHHHHHhcCcccccCCCCceEEcCCCCCCceecccceeecCCCccCC
Q 005816 353 DGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTK 410 (676)
Q Consensus 353 ~~~~~~~~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~~~~~~ylP~Elc~i~~~Qr~~~ 410 (676)
.+|||+|||+++ |++|+| |+||||++|+.++++|||||||.|++||++++
T Consensus 75 ------~~isV~~Yf~~~-~~~l~~-p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~ 124 (124)
T 3mj0_A 75 ------KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNR 124 (124)
T ss_dssp ------SEEEHHHHHHTT-TCCCSC-SSSEEEECCBTTBCCEECGGGEEEEC------
T ss_pred ------cEEEHHHHHHHc-CCcccC-CCCCeEeecCCCCceEecceeEEECCCCccCC
Confidence 489999999997 999999 99999999998899999999999999999864
No 16
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.86 E-value=3e-22 Score=179.72 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=92.0
Q ss_pred CcHHHHHHHhcCCCCCCchhHHHHHHHhcceEEEEEecCceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHH
Q 005816 286 GPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYD 365 (676)
Q Consensus 286 ~~v~d~l~~~~~~~~~~~~~~~~~~~~Lkgl~V~t~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~~ 365 (676)
+||+|+|.+.....+ ....+.++++.|+|+.|.|.|+||.|+|.+|+++.++.++|+.+++ .++||+|
T Consensus 2 ~tvld~~~~~~~~~~-~~~~~~~~~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg-----------~~~T~~e 69 (124)
T 3o7v_X 2 ETVLDFMFNFYHQTE-EHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----------SEVSFLE 69 (124)
T ss_dssp CBHHHHHHHSCCCSS-HHHHHHHHHHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTTS-----------CEEEHHH
T ss_pred ccHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCCC-----------CeeeHHH
Confidence 689999998653211 1224678999999999999999999999999999999999986432 4899999
Q ss_pred HHHHhcCcccccCCCCceEEcCCCC---------CCceecccceeecCCCccCCCCCHHHHHH
Q 005816 366 YFVNNRNIDLRYSGDLPCINVGKPK---------RPTYIPLELCELVSLQRYTKALTNLQRAS 419 (676)
Q Consensus 366 Yf~~~Y~i~L~~~p~lPll~vg~~~---------~~~ylP~Elc~i~~~Qr~~~kLs~~q~~~ 419 (676)
||+++|||+|++ ++||||.++.++ +++|||||||.++| |++++|++
T Consensus 70 Yyk~kY~i~I~~-~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~ltG-------ltd~~r~d 124 (124)
T 3o7v_X 70 YYRKQYNQEITD-LKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRND 124 (124)
T ss_dssp HHHHHHCCCCCC-SSCCEEEECCC----------CCEEECGGGEECCC-------CC------
T ss_pred HHHHHhCceecC-CCcceEEEeeecccCCCCCCcceEEechhheeccC-------CChHhccC
Confidence 999999999999 999999996432 67999999999998 79888764
No 17
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.84 E-value=1.6e-21 Score=219.53 Aligned_cols=124 Identities=22% Similarity=0.475 Sum_probs=101.7
Q ss_pred ecceeeeecCCcHHHHHHHhc---CCCCCCchhHHH--HHHHhcceEEEEEe------cCceEEEeccCccccccceeec
Q 005816 276 DVSTTMIIQPGPVVDFLIANQ---NVRDPFSIDWAK--AKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSL 344 (676)
Q Consensus 276 Dvs~~~F~~~~~v~d~l~~~~---~~~~~~~~~~~~--~~~~Lkgl~V~t~~------~~r~~kI~gi~~~~~~~~~F~~ 344 (676)
+...+.|+++++|+|++.++. +.+++...||.+ ++++||||+|+++| .+|.|+|.||+..+|.+++|+.
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEecc
Confidence 445667899999999999853 456676677765 99999999999999 4788999999999999999987
Q ss_pred ccCCCCCCCCCccceeeeHHHHHHHhcCcccccCCCCceEEcCCCCCCceecccceeecCCCccCCCCC
Q 005816 345 KQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALT 413 (676)
Q Consensus 345 ~~~~~~~~~~~~~~~~iTV~~Yf~~~Y~i~L~~~p~lPll~vg~~~~~~ylP~Elc~i~~~Qr~~~kLs 413 (676)
++ ++|||+|||+ +|||+|+| |+||||++|+.++++|||||||.|+++|||++|||
T Consensus 455 ~~------------~~~sv~~yf~-~~~~~l~~-p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 DG------------KKVTIASYFH-SRNYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp TT------------EEEEHHHHHH-HTTCCCSC-TTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred CC------------eEEEHHHHHH-HcCCcccC-CCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 42 5899999999 89999999 99999999999999999999999999999999986
No 18
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=99.64 E-value=1.5e-17 Score=181.39 Aligned_cols=165 Identities=21% Similarity=0.167 Sum_probs=98.1
Q ss_pred eecCCCeeecC--CCccc------CCCCCccccCCceecCCCc--cceEEEEEeCCcccHHHHHHHHHHHHh---hcCCc
Q 005816 467 RVLPAPRLKFG--NGEDF------SPRNGRWNFNNKKLVQPTK--IERWAVVNFSARCDIRSLVRDLIKCGE---MKGIL 533 (676)
Q Consensus 467 RvL~~P~i~~g--~~~~~------~p~~g~Wn~~~~kf~~p~~--i~~W~vv~~~~~~~~~~f~~~l~~~~~---~~G~~ 533 (676)
..|..|.+.|+ +|+++ .|..| +++...+.... -.+|+||+..+... |++.|.+... ..++.
T Consensus 4 ~~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~ 77 (427)
T 2w42_A 4 YKIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFSS---LINQLKSQISSKIDEVWH 77 (427)
T ss_dssp -------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTCH---HHHHHHHHHHHHHHHTTC
T ss_pred cccCCCcceeeccCCCcccccccCCHHHH---HHhcCCCccCCCCCCEEEEEECcccHH---HHHHHHHhhhhcCCCcee
Confidence 34667888888 55532 12222 22223333333 37899997665433 5555555432 24555
Q ss_pred CCCCccccccCCcccCCChHHHHHHHHHHHHhhCCCCCcEEEEEc--------CCCCCCCchhhhhhhcccccCceeeEe
Q 005816 534 IDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLL--------PERKNSDLYGPWKRKNLADFGIVTQCM 605 (676)
Q Consensus 534 i~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvIl--------p~~k~~~~Y~~iK~~~~~~~GI~TQci 605 (676)
+..+... ...+. +.+.+.+++ +++++|||+ |+ ++.+.|. +|+ ++.+.||+||||
T Consensus 78 ~~~~~~~---~~~y~--------~~i~~~l~~----~~~lvlvilp~~~~~~~~~-~~~~~y~-~K~-~~~~~gvptQ~I 139 (427)
T 2w42_A 78 IHNINIS---EFIYD--------SPHFDSIKS----QVDNAIDTGVDGIMLVLPE-YNTPLYY-KLK-SYLINSIPSQFM 139 (427)
T ss_dssp CCSCEEE---EEECS--------SSSHHHHHH----HHHHHHHHCCSEEEEEESS-CCHHHHH-HHH-HHHHTTSCEEEE
T ss_pred ecCCcCC---hHHHH--------HHHHHHhcC----CCCEEEEEEEccccccCCC-CCcchHH-HHH-HHhCCCcCcEEE
Confidence 5444211 00111 112233333 368999999 65 4444554 786 557999999999
Q ss_pred ecccC---cHH-HHHHHHHHHhhccCCceeeccccCCCCCCCcCCCCeEEEeeeccCCCCC
Q 005816 606 APMRV---NDQ-YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPG 662 (676)
Q Consensus 606 ~~~k~---~~q-~~~Ni~lKINaKLGG~N~~l~~~~~~~~p~~~~~~tMIiG~DVsHp~~g 662 (676)
..++. +.+ +++||+||||+||||+||.|+.. .|. .+|||||+||+|++++
T Consensus 140 ~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~ 193 (427)
T 2w42_A 140 RYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV 193 (427)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS
T ss_pred EhhhcccccchhHHHHHHHHHHHHhCCcceecccC----CCC---CCeEEEEEEEEEcCCC
Confidence 98653 434 48999999999999999999731 122 5799999999999865
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.81 E-value=2.6e-09 Score=123.29 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=72.9
Q ss_pred HHHHHhcceEEEEEecC-ceEEEeccCccccccceeecccCCCCCCCCCccceeeeHHHHHHHhcCcccccCCCCceEEc
Q 005816 308 KAKRTLKNLRIKTITSN-QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386 (676)
Q Consensus 308 ~~~~~Lkgl~V~t~~~~-r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~iTV~~Yf~~~Y~i~L~~~p~lPll~v 386 (676)
.+.+.|+|..|.|.|+| |.|+|.+++++..+.++|+.++ ..+|+.|||+++||++|++ ++||+|.+
T Consensus 151 ~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~~------------~~~Ty~dYYk~ky~i~I~d-~~QPLL~~ 217 (756)
T 2qvw_A 151 TLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRAN------------ESITYMRYYATAHNIHLRA-ADLPLVAA 217 (756)
T ss_dssp -CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEETT------------EEEEHHHHHHHTTCCCCSC-TTSEEEEE
T ss_pred hhHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCCCC------------CCCCHHHHHHHHcCccccc-CCCCeEEE
Confidence 45679999999999999 9999999999999999998542 3799999999999999999 99999986
Q ss_pred CC------------------CCCCceecccceeecCC
Q 005816 387 GK------------------PKRPTYIPLELCELVSL 405 (676)
Q Consensus 387 g~------------------~~~~~ylP~Elc~i~~~ 405 (676)
.. ..+.+|||||||.+++.
T Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~~~v~L~PELC~vt~L 254 (756)
T 2qvw_A 218 VRLDDLKDHQIPAPGSWDDLAPKLRFLPPELCLLLPD 254 (756)
T ss_dssp EETTTTTTCCCCSTTC-CCSCSSCEEECTTTCEECCT
T ss_pred EecccccccccccccccccCCccceeeCHHHheeecC
Confidence 32 11347999999999984
No 20
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=44.16 E-value=24 Score=35.72 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=52.2
Q ss_pred HHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCce
Q 005816 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLN 630 (676)
Q Consensus 559 ~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~N 630 (676)
-++.++++....|.|.+++.-+...+..|-..|...+.+.||.+..+... .....-+-+.+.++|.- .-|+-
T Consensus 42 ~v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIl 116 (303)
T 4b4u_A 42 RVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGIL 116 (303)
T ss_dssp HHHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEE
Confidence 34455554445688988888774567889999999889999999988864 44555677778888864 44663
No 21
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=34.67 E-value=52 Score=33.26 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhCC-CCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCcHHHHHHHHHHHhh--ccCCcee
Q 005816 556 VEKMFDEIQSKLP-GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA--KLGGLNS 631 (676)
Q Consensus 556 ~~~~~~~l~~~~~-~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKINa--KLGG~N~ 631 (676)
+..-+++++++.. ..|.|.+++.-++..+..|-..|...+.+.||.+..+.. ......-+-+.+.++|. ..-|+.-
T Consensus 22 ~~~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlV 101 (300)
T 4a26_A 22 LKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIV 101 (300)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 3344455655533 468899888877456789999999999999999988875 34455567778888886 4778765
Q ss_pred ec
Q 005816 632 LL 633 (676)
Q Consensus 632 ~l 633 (676)
.+
T Consensus 102 ql 103 (300)
T 4a26_A 102 QL 103 (300)
T ss_dssp CS
T ss_pred cC
Confidence 44
No 22
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=33.42 E-value=53 Score=33.24 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhC-CCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCcHHHHHHHHHHHhhc--cCCce
Q 005816 555 RVEKMFDEIQSKL-PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK--LGGLN 630 (676)
Q Consensus 555 ~~~~~~~~l~~~~-~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKINaK--LGG~N 630 (676)
++..-++.++++. ...|.|.+++.-++..+..|-..|...+.+.||.+..+.. ......-+-..+.++|.- .-|+-
T Consensus 19 ~~~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIl 98 (301)
T 1a4i_A 19 RLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFL 98 (301)
T ss_dssp HHHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEE
Confidence 3344455566553 1348899888877566889999999988899999999875 344555677788888853 44553
No 23
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=33.24 E-value=58 Score=32.69 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCcHHHHHHHHHHHhh--ccCCceee
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA--KLGGLNSL 632 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKINa--KLGG~N~~ 632 (676)
+..-+++++++....|.|.+++.-++..+..|-..|...+.+.||.+..+.. ......-+-+.+.++|. ..-|+.-.
T Consensus 21 ~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVq 100 (286)
T 4a5o_A 21 IAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQ 100 (286)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEc
Confidence 3334445555433458898888876456788999999998999999988875 34455567778888886 46677654
Q ss_pred c
Q 005816 633 L 633 (676)
Q Consensus 633 l 633 (676)
+
T Consensus 101 l 101 (286)
T 4a5o_A 101 L 101 (286)
T ss_dssp S
T ss_pred C
Confidence 4
No 24
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=30.39 E-value=52 Score=33.03 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCcHHHHHHHHHHHhhc--cCCce
Q 005816 555 RVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK--LGGLN 630 (676)
Q Consensus 555 ~~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKINaK--LGG~N 630 (676)
++..-+++++++....|.|.+++.-++..+..|-..|...+.+.||.+..+.. ......-+.+.+.++|.- .-|+-
T Consensus 18 ~~~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIl 96 (288)
T 1b0a_A 18 EVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGIL 96 (288)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEE
Confidence 33444555655432348898888877566789999999888899999998875 344555566778888764 34553
No 25
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=29.28 E-value=66 Score=32.15 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeec-ccCcHHHHHHHHHHHhhc--cCCc
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK--LGGL 629 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~-~k~~~q~~~Ni~lKINaK--LGG~ 629 (676)
+..-++.++++ ...|.|.+++.-++..+..|-..|...+.+.||.+..+.. ......-+-+.+.++|.- .-|+
T Consensus 19 ~~~~v~~l~~~-g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GI 94 (281)
T 2c2x_A 19 LKQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGY 94 (281)
T ss_dssp HHHHHHHHHHT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHhc-CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEE
Confidence 33344555544 2348898888876456788999999888899999998875 344555566777888854 3454
No 26
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=28.41 E-value=66 Score=32.23 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhh--ccCCceee
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA--KLGGLNSL 632 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINa--KLGG~N~~ 632 (676)
+..-+++++++. ..|.|.+++.-++..+..|-..|...+.+.||.+..+... .....-+-+.+.++|. +.-|++-.
T Consensus 20 ~~~~v~~l~~~~-~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvq 98 (285)
T 3p2o_A 20 LKEKNQFLKSKG-IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQ 98 (285)
T ss_dssp HHHHHHHHHTTT-CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHHHHHHHhcC-CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEec
Confidence 333444555443 3688988888764567889999999989999999888753 4455567777888886 57787654
Q ss_pred c
Q 005816 633 L 633 (676)
Q Consensus 633 l 633 (676)
+
T Consensus 99 l 99 (285)
T 3p2o_A 99 L 99 (285)
T ss_dssp S
T ss_pred C
Confidence 4
No 27
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=27.95 E-value=60 Score=32.53 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhCCCCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecc-cCcHHHHHHHHHHHhhc--cCCceee
Q 005816 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLNSL 632 (676)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~N~~ 632 (676)
+..-+++++++....|.|.+++.-++..+..|-..|...+.+.||.+..+... .....-+-..+.++|.- .-|++-.
T Consensus 20 ~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvq 99 (285)
T 3l07_A 20 LATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQ 99 (285)
T ss_dssp HHHHHHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred HHHHHHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEc
Confidence 33344455544223588988888764567889999998889999999888753 44555677788888864 6687654
Q ss_pred c
Q 005816 633 L 633 (676)
Q Consensus 633 l 633 (676)
+
T Consensus 100 l 100 (285)
T 3l07_A 100 L 100 (285)
T ss_dssp S
T ss_pred C
Confidence 4
No 28
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=24.39 E-value=75 Score=32.43 Aligned_cols=73 Identities=14% Similarity=0.323 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhCC-CCCcEEEEEcCCCCCCCchhhhhhhcccccCceeeEeecccCcHHHHHHHHHHHhhc--cCCc
Q 005816 555 RVEKMFDEIQSKLP-GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAK--LGGL 629 (676)
Q Consensus 555 ~~~~~~~~l~~~~~-~~~~~vlvIlp~~k~~~~Y~~iK~~~~~~~GI~TQci~~~k~~~q~~~Ni~lKINaK--LGG~ 629 (676)
++...++.++++.. ..|.|++++..++..+..|-.+|...+.+.||.+..+..... .-+.+.+.++|.- .-|+
T Consensus 20 ~~~~~v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~l~~~i~~lN~d~~v~GI 95 (320)
T 1edz_A 20 EIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIEDK--DFLEEAIIQANGDDSVNGI 95 (320)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSSG--GGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHcCCCCCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCCh--HHHHHHHHHHcCCCCCCEE
Confidence 33444555555422 248888888876556788999999888899999988875432 3355677777743 3454
Done!