Your job contains 1 sequence.
>005817
MGPGLEISYWLTLRSGRCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMVDELDDL
ERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDE
GRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVL
AQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYL
NKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKS
VDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF
LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFL
MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE
ARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL
ESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA
REMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRD
YYSTETKVSFSLLCFS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005817
(676 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2123678 - symbol:AT4G28200 "AT4G28200" species... 1918 4.2e-198 1
MGI|MGI:2445193 - symbol:Utp6 "UTP6, small subunit (SSU) ... 308 1.9e-36 3
UNIPROTKB|F1NLG7 - symbol:UTP6 "Uncharacterized protein" ... 307 2.0e-36 3
UNIPROTKB|E1BYV8 - symbol:UTP6 "Uncharacterized protein" ... 307 4.4e-36 2
UNIPROTKB|F1RJ62 - symbol:UTP6 "Uncharacterized protein" ... 322 8.8e-35 2
UNIPROTKB|A5PJN6 - symbol:UTP6 "Uncharacterized protein" ... 334 2.6e-34 2
UNIPROTKB|E2RMS8 - symbol:UTP6 "Uncharacterized protein" ... 318 8.6e-34 2
UNIPROTKB|Q9NYH9 - symbol:UTP6 "U3 small nucleolar RNA-as... 317 7.8e-33 2
ZFIN|ZDB-GENE-040426-769 - symbol:utp6 "UTP6, small subun... 285 4.4e-32 2
CGD|CAL0000714 - symbol:orf19.2330 species:5476 "Candida ... 347 7.2e-31 1
UNIPROTKB|Q59WH2 - symbol:UTP6 "Potential U3 snoRNP prote... 347 7.2e-31 1
POMBASE|SPBC244.02c - symbol:SPBC244.02c "U3 snoRNP-assoc... 322 1.9e-26 1
SGD|S000002857 - symbol:UTP6 "Nucleolar protein" species:... 299 3.6e-24 2
UNIPROTKB|G4N9I4 - symbol:MGG_03271 "Uncharacterized prot... 280 4.2e-22 1
RGD|1311017 - symbol:Utp6 "UTP6, small subunit (SSU) proc... 180 8.9e-22 3
DICTYBASE|DDB_G0279601 - symbol:utp6 "tetratricopeptide-l... 215 4.3e-14 1
ASPGD|ASPL0000074715 - symbol:AN5010 species:162425 "Emer... 174 3.3e-11 2
FB|FBgn0030081 - symbol:CG7246 species:7227 "Drosophila m... 182 1.7e-10 1
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 125 2.1e-06 2
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 119 3.3e-06 2
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 109 7.4e-06 2
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 113 3.5e-05 2
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 113 3.6e-05 2
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 117 4.5e-05 2
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 116 4.9e-05 2
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 87 0.00044 2
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 106 0.00077 2
>TAIR|locus:2123678 [details] [associations]
symbol:AT4G28200 "AT4G28200" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0001510
"RNA methylation" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0006406 "mRNA export from nucleus" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006626
"protein targeting to mitochondrion" evidence=RCA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
EMBL:CP002687 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
EMBL:AL161572 KO:K14557 InterPro:IPR013949 Pfam:PF08640 OMA:WVEYLRM
EMBL:AY072310 EMBL:BT008394 IPI:IPI00524986 PIR:T09036
RefSeq:NP_194549.1 UniGene:At.43066 ProteinModelPortal:Q9M0I7
SMR:Q9M0I7 IntAct:Q9M0I7 STRING:Q9M0I7 PRIDE:Q9M0I7 DNASU:828935
EnsemblPlants:AT4G28200.1 GeneID:828935 KEGG:ath:AT4G28200
TAIR:At4g28200 HOGENOM:HOG000029932 InParanoid:Q9M0I7
PhylomeDB:Q9M0I7 ProtClustDB:CLSN2685549 Genevestigator:Q9M0I7
Uniprot:Q9M0I7
Length = 648
Score = 1918 (680.2 bits), Expect = 4.2e-198, P = 4.2e-198
Identities = 380/636 (59%), Positives = 484/636 (76%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MADVVQYRLERMVDELDDLERR +FTR EI+EIVKQRRKFEYRLKRPSPLK+D++AYI+Y
Sbjct: 1 MADVVQYRLERMVDELDDLERREIFTRAEIAEIVKQRRKFEYRLKRPSPLKEDFIAYIDY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E +LD LR+LR+KS+ R + ++ GVARI+EIYRLA MR+KGDI LW
Sbjct: 61 EVKLDELRQLRRKSVARVTKKRKK------KSVSDFAGVARIVEIYRLATMRYKGDINLW 114
Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
F+Y+EFC+Q+++GRMKK LAQ IRFHPKV GVWIYAA+WEFD NLNVTAARALM NGLRV
Sbjct: 115 FRYLEFCKQKRHGRMKKALAQAIRFHPKVAGVWIYAASWEFDRNLNVTAARALMLNGLRV 174
Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281
C SE+LWVEYLRMELT+LNKLKARKVALGEDKG+LVRD + ++++W +ENK LFM LD
Sbjct: 175 CSNSEDLWVEYLRMELTFLNKLKARKVALGEDKGSLVRDTKTVEDEQWKDENKELFMSLD 234
Query: 282 ---G--EVENTDGSQPENMES-QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFE 335
G + EN + S E++E + VD +E+G VLQTIYSGAVEA+PSSF+LR+RF E
Sbjct: 235 EKEGNEKEENDEDSIVEDVEDVTEKVDFLKEKGSNVLQTIYSGAVEAIPSSFDLRKRFLE 294
Query: 336 IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK 395
I+EAT+LA SD+M + ILSD++RDF +P+YW+WLAR +M+ +S + E P QMQK
Sbjct: 295 ILEATDLAHSDEMRNTILSDLKRDFCNEPEYWNWLARHEMSGCISNEAGLEFANP-QMQK 353
Query: 396 AIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455
AIQV+EE L+ V SS +F++Y FLM+ I + ++E+ S ISH++ VY+KA+
Sbjct: 354 AIQVFEEGLQTVTSSSMFEIYINFLMEAIVQSNGD--ENEISSLSNPIISHIINVYQKAD 411
Query: 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515
GCLTE++A YV+LYL+L K EA+KLA KLCS K + S +LWL R+S+EIR ++ NS
Sbjct: 412 ETGCLTEELADEYVSLYLKLEKTHEAQKLAEKLCSEKFAGSAKLWLSRVSIEIRSLSENS 471
Query: 516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDG 575
SPSKAD ++FELL L KV ESESLWLMA FF +Q+ Y DKLVE++++S K
Sbjct: 472 -SPSKADFQTVFELLSNALRKVPISESESLWLMAFNFFAHQRTYLDKLVEMSILSATKSH 530
Query: 576 GGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKD 635
G + FSL S ++ V++ G AR++YKRFLALP P LVLY+ CIE+E NL SVGDKD
Sbjct: 531 GSDHVFSLASTVVKFVLETKGAHSARKIYKRFLALPGPSLVLYKGCIEIETNLISVGDKD 590
Query: 636 SLVNARKLFESALATYDQNTSLWRDYYSTETKVSFS 671
L NARKL++SA+A+Y Q+ LW++YYS ETK+ S
Sbjct: 591 GLSNARKLYDSAVASYGQDVELWKNYYSLETKLGTS 626
>MGI|MGI:2445193 [details] [associations]
symbol:Utp6 "UTP6, small subunit (SSU) processome component,
homolog (yeast)" species:10090 "Mus musculus" [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 MGI:MGI:2445193 GO:GO:0005730 Gene3D:1.25.40.10
EMBL:AL591113 GO:GO:0006364 eggNOG:COG5191 KO:K14557
InterPro:IPR013949 Pfam:PF08640 CTD:55813 HOGENOM:HOG000285956
HOVERGEN:HBG051886 OMA:EKEQESC OrthoDB:EOG4RBQJ7 EMBL:AF334387
EMBL:AK029151 EMBL:AK084976 EMBL:BC018250 EMBL:BC024850
EMBL:BC023920 IPI:IPI00461832 RefSeq:NP_659075.1 UniGene:Mm.274961
ProteinModelPortal:Q8VCY6 SMR:Q8VCY6 IntAct:Q8VCY6 STRING:Q8VCY6
PhosphoSite:Q8VCY6 PaxDb:Q8VCY6 PRIDE:Q8VCY6
Ensembl:ENSMUST00000043152 Ensembl:ENSMUST00000108241 GeneID:216987
KEGG:mmu:216987 UCSC:uc007kkz.1 GeneTree:ENSGT00390000016493
InParanoid:Q8VCY6 ChiTaRS:UTP6 NextBio:375498 Bgee:Q8VCY6
Genevestigator:Q8VCY6 GermOnline:ENSMUSG00000035575 Uniprot:Q8VCY6
Length = 597
Score = 308 (113.5 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 66/207 (31%), Positives = 110/207 (53%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+ EI I+K+ EY++ R + LK+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L +++ R R+ V R+ ++ A ++K D++LW
Sbjct: 61 EINL--LELIQR--------RRARIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ + K+ + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYIVFCKKWGTKTHLSKIFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
P +L+ EY RMEL + KL+ K
Sbjct: 171 FHPECPKLYQEYFRMELMHAEKLRKEK 197
Score = 123 (48.4 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 46/204 (22%), Positives = 93/204 (45%)
Query: 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374
IY ++ + + I + + A+ D+ +I D+Q DP WD++AR +
Sbjct: 225 IYKNSISKIKGA-EFHVSLLAIAQLFDFAK--DLQKEIYDDLQALHTDDPLTWDYVARRE 281
Query: 375 MTDSVSKDGTSEDIVPSQMQKAIQ----------VYEEALKNVPSSMIFDLYTKFLMDMI 424
+ + S+ G + + S+ KA++ VYEEA+K +P+ ++ Y F ++
Sbjct: 282 L-EIESQPGEEQPV--SKQAKAVEMGRREERCCAVYEEAVKALPTEAMWKCYITFCLERF 338
Query: 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL 484
+ K S +P + + + + KA + L+E +++ L L+ EA ++
Sbjct: 339 SKKT-----SSVPLRGQR-LERTMLAFRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQV 392
Query: 485 AAKLCSGKLSDSVQLWLLRISVEI 508
A + + DSV +W ++ V I
Sbjct: 393 A-EAGTELFKDSVTMWQTKLQVLI 415
Score = 76 (31.8 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 32/130 (24%), Positives = 58/130 (44%)
Query: 545 LWLMALKFFMNQKHYFDK--LVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQARE 602
LW+ ++ + K D + + A+I+V G S +L ++ + G ++AR
Sbjct: 441 LWISWAEWSESAKSQEDTEAIFKKAIIAVT----GASSVTLKEKYLDWAYRSGGYKKARA 496
Query: 603 MYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS-LWRD 660
++K L RP V ++ ++ E + +VN R+ +E AL + + S LW D
Sbjct: 497 VFKS-LQESRPFSVEFFRKMMQFEKEQ----EPCKMVNLREYYERALREFGTSDSDLWMD 551
Query: 661 YYSTETKVSF 670
Y E F
Sbjct: 552 YIKEELNHPF 561
Score = 37 (18.1 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 637 LVNARKLFESALATYDQNTSLWRDYYST-ETKV 668
L+ + LF+ AL + T L++D + +TK+
Sbjct: 379 LLLRQDLFKEALQVAEAGTELFKDSVTMWQTKL 411
>UNIPROTKB|F1NLG7 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 InterPro:IPR013949 Pfam:PF08640
OMA:EKEQESC GeneTree:ENSGT00390000016493 EMBL:AADN02030009
IPI:IPI00585249 Ensembl:ENSGALT00000005162 ArrayExpress:F1NLG7
Uniprot:F1NLG7
Length = 599
Score = 307 (113.1 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 72/217 (33%), Positives = 113/217 (52%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ V+ RLE V EL+ LER GLFT EI ++K+ EY+++R + K+D++ YI+Y
Sbjct: 1 MAERVEQRLEDRVPELEQLERVGLFTHEEIRAVLKKATALEYKIQRRALRKEDFINYIQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ G +E + R+ +++ A ++K D++LW
Sbjct: 61 EINLLELIKKRRARTGYSFKKEEIESSI----------MHRVHSLFKRATGKWKEDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
++ FC+Q ++ KV + ++ HP P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSHVAFCKQWNAKHQLSKVFSTMLAIHPNKPALWIMAAKWEMETRLSSESARHLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTL 257
P +L+ EY RMEL K + K L K L
Sbjct: 171 FHPECPKLYQEYFRMELMNAEKQRKEKKELERAKMNL 207
Score = 157 (60.3 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 69/292 (23%), Positives = 136/292 (46%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDIVPSQM----QKAIQVY 400
D+ +IL +Q ++ +P WD++AR L++ S + T++ + S+M ++ V+
Sbjct: 254 DLQKEILESLQAEYADNPLTWDYMARRELELGSLKSTEPTTKQMKVSEMTQREERCCAVF 313
Query: 401 EEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL 460
+EA+ VP+ ++ Y F ++ K T EL + + L+V+ KA L
Sbjct: 314 DEAVTAVPTEDMWKCYITFCLERYNRK---TNSEELK---QKRLERTLSVFSKAHESSLL 367
Query: 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520
E + +++ L L+ +A ++A + + + S SV++W LR+ V I+ + N
Sbjct: 368 PEALYKQWLQLLLESSLSQKAAEVA-EAATKRFSLSVEIWQLRLQVLIQLKSDN------ 420
Query: 521 ADILSIFE-LLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGES 579
+ FE K + +K L +LW+ + N K + L + +L +VA ES
Sbjct: 421 --VTQCFEEAFKHVKSK-GTLPLWTLWVEWSEV-TNSKEDTEALYQRSLHAVAP---AES 473
Query: 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP-GLVLYQNCIELENNLAS 630
++ ++ + G ++ R ++ L RP L ++ IE+E S
Sbjct: 474 -VTMKEKYLDWAYRSGGYKKVRRVFTS-LHESRPLSLDFFRKMIEIEKEQES 523
Score = 43 (20.2 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 632 GDKDSLVNARKLFESALATYDQNT 655
G K S RKL E +LA+Y+ T
Sbjct: 553 GAKSSPGQTRKLCEYSLASYEDVT 576
Score = 43 (20.2 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 40 LAMADVVQYRLERMVDELDDLERRGLFTRHEIS--EIVKQRR-KFEYRLKR 87
L A ++Y+++R +D + ++EI+ E++K+RR + Y K+
Sbjct: 34 LKKATALEYKIQRRALRKEDFIN---YIQYEINLLELIKKRRARTGYSFKK 81
>UNIPROTKB|E1BYV8 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 InterPro:IPR013949 Pfam:PF08640
GeneTree:ENSGT00390000016493 EMBL:AADN02030009 IPI:IPI00820452
Ensembl:ENSGALT00000038759 ArrayExpress:E1BYV8 Uniprot:E1BYV8
Length = 597
Score = 307 (113.1 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 72/217 (33%), Positives = 113/217 (52%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ V+ RLE V EL+ LER GLFT EI ++K+ EY+++R + K+D++ YI+Y
Sbjct: 1 MAERVEQRLEDRVPELEQLERVGLFTHEEIRAVLKKATALEYKIQRRALRKEDFINYIQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ G +E + R+ +++ A ++K D++LW
Sbjct: 61 EINLLELIKKRRARTGYSFKKEEIESSI----------MHRVHSLFKRATGKWKEDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
++ FC+Q ++ KV + ++ HP P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSHVAFCKQWNAKHQLSKVFSTMLAIHPNKPALWIMAAKWEMETRLSSESARHLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTL 257
P +L+ EY RMEL K + K L K L
Sbjct: 171 FHPECPKLYQEYFRMELMNAEKQRKEKKELERAKMNL 207
Score = 157 (60.3 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 69/292 (23%), Positives = 136/292 (46%)
Query: 347 DMHDKILSDMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDIVPSQM----QKAIQVY 400
D+ +IL +Q ++ +P WD++AR L++ S + T++ + S+M ++ V+
Sbjct: 254 DLQKEILESLQAEYADNPLTWDYMARRELELGSLKSTEPTTKQMKVSEMTQREERCCAVF 313
Query: 401 EEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL 460
+EA+ VP+ ++ Y F ++ K T EL + + L+V+ KA L
Sbjct: 314 DEAVTAVPTEDMWKCYITFCLERYNRK---TNSEELK---QKRLERTLSVFSKAHESSLL 367
Query: 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520
E + +++ L L+ +A ++A + + + S SV++W LR+ V I+ + N
Sbjct: 368 PEALYKQWLQLLLESSLSQKAAEVA-EAATKRFSLSVEIWQLRLQVLIQLKSDN------ 420
Query: 521 ADILSIFE-LLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGES 579
+ FE K + +K L +LW+ + N K + L + +L +VA ES
Sbjct: 421 --VTQCFEEAFKHVKSK-GTLPLWTLWVEWSEV-TNSKEDTEALYQRSLHAVAP---AES 473
Query: 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP-GLVLYQNCIELENNLAS 630
++ ++ + G ++ R ++ L RP L ++ IE+E S
Sbjct: 474 -VTMKEKYLDWAYRSGGYKKVRRVFTS-LHESRPLSLDFFRKMIEIEKEQES 523
Score = 43 (20.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 40 LAMADVVQYRLERMVDELDDLERRGLFTRHEIS--EIVKQRR-KFEYRLKR 87
L A ++Y+++R +D + ++EI+ E++K+RR + Y K+
Sbjct: 34 LKKATALEYKIQRRALRKEDFIN---YIQYEINLLELIKKRRARTGYSFKK 81
>UNIPROTKB|F1RJ62 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 KO:K14557 InterPro:IPR013949
Pfam:PF08640 CTD:55813 OMA:EKEQESC GeneTree:ENSGT00390000016493
EMBL:FP089481 RefSeq:XP_003131794.1 UniGene:Ssc.6804
Ensembl:ENSSSCT00000019313 GeneID:100524172 KEGG:ssc:100524172
Uniprot:F1RJ62
Length = 598
Score = 322 (118.4 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
Identities = 69/207 (33%), Positives = 114/207 (55%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+R EI I+K+ EY+++R + K+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRLPELEQLERIGLFSRAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ IG ++ V R+ ++R A ++K D++LW
Sbjct: 61 EINLLELIQRRRARIGYSFKKDEIENSI----------VHRVQGVFRRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ ++ KV + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYVVFCKKWATKAQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
P +L+ EY RMEL + KL+ K
Sbjct: 171 FHPECPKLYQEYFRMELMHAEKLRKEK 197
Score = 128 (50.1 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
Identities = 59/244 (24%), Positives = 109/244 (44%)
Query: 293 ENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKI 352
EN+E S ++ + + R+ IY +V + + I + + A+ D+ +I
Sbjct: 208 ENLEY--SEEILKGELARI---IYKNSVSIIKGA-EFHVSLLSIAQLFDFAK--DLQREI 259
Query: 353 LSDMQRDFLVDPKYWDWLARLKMTDSVSKDG----TSEDIVPSQM----QKAIQVYEEAL 404
D+Q DP WD++AR ++ + S+ G T++ ++ ++ VYEEA+
Sbjct: 260 YDDLQALHTDDPLTWDYVARREL-EMESQPGDEPPTTKQAKVAEATRREERCCAVYEEAV 318
Query: 405 KNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI 464
K +P+ ++ Y F M+ K +S+L E + + + KA + L E
Sbjct: 319 KTLPTEAMWKCYLNFCMERFTKKT----NSQLLR--EKRLERTMVAFRKAHELRLLPEVQ 372
Query: 465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL 524
++ L LQ EA ++A + DSV +W +++ V I S SP D+
Sbjct: 373 YKQWSELLLQHNLFKEALEVAGA-GTELFQDSVMMWQVKLQVLIA-----SESP---DVA 423
Query: 525 SIFE 528
+FE
Sbjct: 424 MVFE 427
>UNIPROTKB|A5PJN6 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005730 GO:GO:0006396 Gene3D:1.25.40.10
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640 CTD:55813
HOGENOM:HOG000285956 HOVERGEN:HBG051886 OMA:EKEQESC
OrthoDB:EOG4RBQJ7 GeneTree:ENSGT00390000016493 EMBL:DAAA02048528
EMBL:BC142183 IPI:IPI00710076 RefSeq:NP_001092610.1
UniGene:Bt.20427 STRING:A5PJN6 Ensembl:ENSBTAT00000020740
GeneID:614984 KEGG:bta:614984 InParanoid:A5PJN6 NextBio:20899389
Uniprot:A5PJN6
Length = 598
Score = 334 (122.6 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 73/207 (35%), Positives = 112/207 (54%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+V+Q R+E + EL LER GLF+ EI I+++ + EYR++R S LK D++ Y++Y
Sbjct: 1 MAEVIQERVEDRLPELQQLERTGLFSHAEIKAIIRKALELEYRIQRRSLLKDDFIRYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + K R RV + RI ++R A +++K D+ LW
Sbjct: 61 EIHL--LDLIEK--------RRARVGYTFKKDEIEDPIIHRIQSVFRRASIKWKDDVRLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
++ FCR+ N + K+ + ++ FH PG+WI AA WE + + +AR L LR
Sbjct: 111 LSFIAFCRKWASNVHLSKIFSSLLAFHSNKPGLWILAAKWELEDRFSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
P +L+ EY RMEL + KL+ K
Sbjct: 171 FHPRCPKLYEEYFRMELMHAEKLRKEK 197
Score = 110 (43.8 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
Identities = 54/227 (23%), Positives = 100/227 (44%)
Query: 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374
IY + + S+ I + A+ D+ +I +D++ DP WD++AR +
Sbjct: 225 IYKNSTSVIKSA-KFHVSLLSIARLFDFAK--DLQREIYNDLKALHADDPVTWDYVARQE 281
Query: 375 MT-DS-------VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAP 426
+ +S +K +++ V + ++ VYEEA+K VP+ ++ Y F M+
Sbjct: 282 LVIESQPVEELPATKQAKAKE-VGRREERCCAVYEEAVKTVPTEAMWKCYMNFCMERFT- 339
Query: 427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT-LYLQLGKLDEARKLA 485
KK +R + + + + KA + L E + +R ++ L L L E+ ++A
Sbjct: 340 KKTSSRLLR-----KKRLERTMVAFWKAHELKLLPE-LQYRQLSKLLLHRQLLKESLEVA 393
Query: 486 AKLCSGKL-SDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK 531
KL SV++W +++ +T S SK FE LK
Sbjct: 394 D--AGVKLFKKSVEMWQVKLEA---LITSESHEMSKG-FEQAFEYLK 434
>UNIPROTKB|E2RMS8 [details] [associations]
symbol:UTP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005730 GO:GO:0006396 KO:K14557 InterPro:IPR013949
Pfam:PF08640 CTD:55813 OMA:EKEQESC GeneTree:ENSGT00390000016493
EMBL:AAEX03006648 RefSeq:XP_853877.1 ProteinModelPortal:E2RMS8
Ensembl:ENSCAFT00000029395 GeneID:480616 KEGG:cfa:480616
NextBio:20855608 Uniprot:E2RMS8
Length = 598
Score = 318 (117.0 bits), Expect = 8.6e-34, Sum P(2) = 8.6e-34
Identities = 69/207 (33%), Positives = 113/207 (54%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+ EI I+K+ EYR++R + K+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYRIQRRALFKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ IG ++ V R+ ++R A ++K D++LW
Sbjct: 61 EINLLELIQRRRTRIGYSFKKDEIENSI----------VHRVQGVFRRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ ++ KV + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYVVFCKKWATKPQLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARK 247
P +L+ EY RMEL + KL+ K
Sbjct: 171 FHPECPKLYQEYFRMELMHAEKLRKEK 197
Score = 123 (48.4 bits), Expect = 8.6e-34, Sum P(2) = 8.6e-34
Identities = 54/222 (24%), Positives = 95/222 (42%)
Query: 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374
IY +V + + I + + A D+ +I D+Q DP WD++AR +
Sbjct: 225 IYKNSVSIIKGA-EFHVSLLSIAQLFDFAT--DLQREIYDDLQALHTDDPLTWDYVARRE 281
Query: 375 M-TDS-------VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAP 426
+ +S +K + ++ + ++ VYEEA+K +P+ ++ Y F ++
Sbjct: 282 LEVESQPAGEQPATKQARAVELGRKE-ERCCAVYEEAVKTLPTEAMWKCYINFCLERFTK 340
Query: 427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAA 486
K T L E + + + KA + L E +++ L L L EA ++A
Sbjct: 341 K---TSSQFLR---EKRLERTMMAFRKAHELRLLPEFQYKQWIDLLLHHDFLKEALEVAV 394
Query: 487 KLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE 528
+ DSV +W +++ V I NS SP DI FE
Sbjct: 395 A-GTASFRDSVTMWQMKLQVLI-----NSKSP---DIAMCFE 427
>UNIPROTKB|Q9NYH9 [details] [associations]
symbol:UTP6 "U3 small nucleolar RNA-associated protein 6
homolog" species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005730
Gene3D:1.25.40.10 GO:GO:0006364 eggNOG:COG5191 KO:K14557
InterPro:IPR013949 Pfam:PF08640 EMBL:AF244135 EMBL:AF334386
EMBL:BC015454 EMBL:BC035325 EMBL:AJ272197 IPI:IPI00020128
RefSeq:NP_060898.2 UniGene:Hs.589862 ProteinModelPortal:Q9NYH9
SMR:Q9NYH9 IntAct:Q9NYH9 MINT:MINT-1435439 STRING:Q9NYH9
PhosphoSite:Q9NYH9 DMDM:134047946 SWISS-2DPAGE:Q9NYH9 PaxDb:Q9NYH9
PRIDE:Q9NYH9 Ensembl:ENST00000261708 GeneID:55813 KEGG:hsa:55813
UCSC:uc002hgq.3 CTD:55813 GeneCards:GC17M030187 HGNC:HGNC:18279
HPA:HPA025936 neXtProt:NX_Q9NYH9 PharmGKB:PA142672224
HOGENOM:HOG000285956 HOVERGEN:HBG051886 InParanoid:Q9NYH9
OMA:EKEQESC OrthoDB:EOG4RBQJ7 GenomeRNAi:55813 NextBio:60986
ArrayExpress:Q9NYH9 Bgee:Q9NYH9 CleanEx:HS_UTP6
Genevestigator:Q9NYH9 GermOnline:ENSG00000108651 Uniprot:Q9NYH9
Length = 597
Score = 317 (116.6 bits), Expect = 7.8e-33, Sum P(2) = 7.8e-33
Identities = 71/227 (31%), Positives = 122/227 (53%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+ EI I+K+ EY+++R + K+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ IG ++ V R+ +++ A ++K D++LW
Sbjct: 61 EINLLELIQRRRTRIGYSFKKDEIENSI----------VHRVQGVFQRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ R+ KV + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEK 267
P +L+ EY RMEL + KL+ K +K ++ ++ D E+
Sbjct: 171 FHPECPKLYKEYFRMELMHAEKLRKEKEEF--EKASMDVENPDYSEE 215
Score = 115 (45.5 bits), Expect = 7.8e-33, Sum P(2) = 7.8e-33
Identities = 62/261 (23%), Positives = 111/261 (42%)
Query: 283 EVENTDGSQPENMESQK-SVDL----FREQGLR--VLQTIYSGAVEALPSSFNLRQRFFE 335
E+ + + + E E +K S+D+ + E+ L+ + IY +V + +
Sbjct: 186 ELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGA-EFHVSLLS 244
Query: 336 IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDI----V 389
I + + A+ D+ +I D+Q DP WD++AR L++ + T++ V
Sbjct: 245 IAQLFDFAK--DLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAVEV 302
Query: 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEE--TRDSELPSHVEHYISHL 447
+ ++ VYEEA+K +P+ ++ Y F ++ K R L
Sbjct: 303 GRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRL--------ERT 354
Query: 448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507
+TV+ KA + L+E + L L EA ++A + DS +W L++ V
Sbjct: 355 MTVFRKAHELKLLSECQYKQLSVSLLCYNFLREALEVAVA-GTELFRDSGTMWQLKLQVL 413
Query: 508 IRCVTRNSFSPSKADILSIFE 528
I S SP DI +FE
Sbjct: 414 IE-----SKSP---DIAMLFE 426
>ZFIN|ZDB-GENE-040426-769 [details] [associations]
symbol:utp6 "UTP6, small subunit (SSU) processome
component, homolog (yeast)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-040426-769 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013949 Pfam:PF08640
HOVERGEN:HBG051886 EMBL:BC044444 IPI:IPI00502395 UniGene:Dr.77391
ProteinModelPortal:Q803K2 STRING:Q803K2 PRIDE:Q803K2
InParanoid:Q803K2 ArrayExpress:Q803K2 Bgee:Q803K2 Uniprot:Q803K2
Length = 594
Score = 285 (105.4 bits), Expect = 4.4e-32, Sum P(2) = 4.4e-32
Identities = 66/214 (30%), Positives = 113/214 (52%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MAD+VQ RLE + L+ LER GLFT E+ ++K+ EY+L R K D++AYI++
Sbjct: 1 MADIVQQRLEDRIPGLEQLERVGLFTNKEVKSMLKRSTALEYKLHRAIQCKDDFIAYIQF 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L + R+ IG RE + I ++R A +++ D++LW
Sbjct: 61 EINTLGLIKKRRARIGYHFKREEIEYPI----------IQGINSVFRRATSKWQEDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
++ F ++ ++ K+L ++ HP P +WI AA E + + +AR L LR
Sbjct: 111 LSHVAFNKKWGSKTQLSKILLSMLAIHPDKPALWIMAAKCEMEDRNSSESARHLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDK 254
P ++++++EY RMEL + K++ ++ L + K
Sbjct: 171 FHPENKKVYLEYFRMELMHAEKMRKQQQELEQAK 204
Score = 143 (55.4 bits), Expect = 4.4e-32, Sum P(2) = 4.4e-32
Identities = 78/324 (24%), Positives = 139/324 (42%)
Query: 268 RWINENKGLFMP-LDGEVENTDGSQPENME-SQKSVDL----FREQGL--RVLQTIYSGA 319
R+ ENK +++ E+ + + + + E Q +D+ F + L ++ + IY A
Sbjct: 170 RFHPENKKVYLEYFRMELMHAEKMRKQQQELEQAKIDVGEYQFSPEILSGKLAEVIYRDA 229
Query: 320 VEALPSS-FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378
+ + + F L +I + + D+ DKIL D+Q + D WD++A+ ++ DS
Sbjct: 230 AQKIKGAEFVLS--LLQIAAIFDFTK--DLQDKILQDLQSQYSDDCLMWDFMAKREL-DS 284
Query: 379 V------SKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETR 432
S G + D + ++ VYEEALK++ S ++ Y F + K +T
Sbjct: 285 AGAPELQSAKGRASD-TDRREERCCLVYEEALKSLNSEAMWTCYVTFCFERY---KRKTN 340
Query: 433 DSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK 492
+EL E LL V + A L E ++ + L G A ++A +
Sbjct: 341 VTELK---EKRKERLLRVLQSAHDAQLLQETFYKNWLQVLLSSGDTITATQIATTAAQ-R 396
Query: 493 LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS-AL-ESESLWLMAL 550
S SV++W + + SP + E LK I K S A+ + ++ W MA
Sbjct: 397 FSQSVEMWSFSLQTLVHLK-----SPEAGPLFQ--EALKHISLKESLAIWQMQADWSMAS 449
Query: 551 KFFMNQKHYFDK--LVEIALISVA 572
+ + +F K L + +S A
Sbjct: 450 QTPKETEAFFQKGILSPVPAVSAA 473
Score = 49 (22.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 40 LAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKR 87
L + ++Y+L R + DD F + + I K+R + Y KR
Sbjct: 34 LKRSTALEYKLHRAIQCKDDFIAYIQFEINTLGLIKKRRARIGYHFKR 81
>CGD|CAL0000714 [details] [associations]
symbol:orf19.2330 species:5476 "Candida albicans" [GO:0034388
"Pwp2p-containing subcomplex of 90S preribosome" evidence=IEA]
[GO:0032040 "small-subunit processome" evidence=IEA] [GO:0030515
"snoRNA binding" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714 GO:GO:0071216
GO:GO:0036180 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114 EMBL:AACQ01000113
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640
RefSeq:XP_713935.1 RefSeq:XP_713993.1 ProteinModelPortal:Q59WH2
STRING:Q59WH2 GeneID:3644384 GeneID:3644449 KEGG:cal:CaO19.2330
KEGG:cal:CaO19.9866 Uniprot:Q59WH2
Length = 431
Score = 347 (127.2 bits), Expect = 7.2e-31, P = 7.2e-31
Identities = 80/236 (33%), Positives = 133/236 (56%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ ++Y LE+ V EL+DL+ +GLF ++EI+ ++++R FE+R+ +D+L Y E+
Sbjct: 1 MAEKIRYYLEQSVPELEDLKIKGLFDKNEITMVMRRRTDFEHRITGRGCKPKDFLRYTEF 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E+ L+ LR+ R + + E + G RI+ I+ A R+ G+ ELW
Sbjct: 61 ETNLEKLRKKRYNRLSKVGMIETKPSISDWA------GTRRIMFIFDRATRRYPGETELW 114
Query: 162 FKYMEFCRQRKNGRMK---KVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218
+Y++F + NG +K KV +++++ P+ W+ AA +EF+ N N AR L Q G
Sbjct: 115 SQYLKFAKS--NGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETNGNAKGARVLFQRG 172
Query: 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENK 274
LR+ S ELW+ Y + ELTY++KL AR+ LG R+ + +E + E K
Sbjct: 173 LRLNSESLELWLNYAQFELTYISKLLARRKVLGLITEKQQREAMETEEAKLEQEIK 228
>UNIPROTKB|Q59WH2 [details] [associations]
symbol:UTP6 "Potential U3 snoRNP protein Utp6p"
species:237561 "Candida albicans SC5314" [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714
GO:GO:0071216 GO:GO:0036180 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114
EMBL:AACQ01000113 eggNOG:COG5191 KO:K14557 InterPro:IPR013949
Pfam:PF08640 RefSeq:XP_713935.1 RefSeq:XP_713993.1
ProteinModelPortal:Q59WH2 STRING:Q59WH2 GeneID:3644384
GeneID:3644449 KEGG:cal:CaO19.2330 KEGG:cal:CaO19.9866
Uniprot:Q59WH2
Length = 431
Score = 347 (127.2 bits), Expect = 7.2e-31, P = 7.2e-31
Identities = 80/236 (33%), Positives = 133/236 (56%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ ++Y LE+ V EL+DL+ +GLF ++EI+ ++++R FE+R+ +D+L Y E+
Sbjct: 1 MAEKIRYYLEQSVPELEDLKIKGLFDKNEITMVMRRRTDFEHRITGRGCKPKDFLRYTEF 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E+ L+ LR+ R + + E + G RI+ I+ A R+ G+ ELW
Sbjct: 61 ETNLEKLRKKRYNRLSKVGMIETKPSISDWA------GTRRIMFIFDRATRRYPGETELW 114
Query: 162 FKYMEFCRQRKNGRMK---KVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218
+Y++F + NG +K KV +++++ P+ W+ AA +EF+ N N AR L Q G
Sbjct: 115 SQYLKFAKS--NGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFETNGNAKGARVLFQRG 172
Query: 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENK 274
LR+ S ELW+ Y + ELTY++KL AR+ LG R+ + +E + E K
Sbjct: 173 LRLNSESLELWLNYAQFELTYISKLLARRKVLGLITEKQQREAMETEEAKLEQEIK 228
>POMBASE|SPBC244.02c [details] [associations]
symbol:SPBC244.02c "U3 snoRNP-associated protein Utp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0030490
"maturation of SSU-rRNA" evidence=ISO] [GO:0030515 "snoRNA binding"
evidence=ISO] [GO:0032040 "small-subunit processome" evidence=ISO]
[GO:0032153 "cell division site" evidence=IDA] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] InterPro:IPR003107 SMART:SM00386
PomBase:SPBC244.02c GO:GO:0005829 GO:GO:0005730 GO:GO:0032153
GO:GO:0044732 EMBL:CU329671 GO:GO:0030515 GenomeReviews:CU329671_GR
GO:GO:0032040 GO:GO:0030490 GO:GO:0005732 eggNOG:COG5191 KO:K14557
InterPro:IPR013949 Pfam:PF08640 PIR:T39963 RefSeq:NP_596813.1
STRING:O60188 EnsemblFungi:SPBC244.02c.1 GeneID:2540651
KEGG:spo:SPBC244.02c OrthoDB:EOG4STWD9 NextBio:20801775
Uniprot:O60188
Length = 488
Score = 322 (118.4 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 74/210 (35%), Positives = 111/210 (52%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ VQY +E+ V EL+DL + +F R EI+ I+K RR FE +L R D+L+YI+Y
Sbjct: 1 MAEKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L+ LR R K R+ G ++L ++ A +F GD+ LW
Sbjct: 61 EINLETLRAKRHK----------RLNITGKITISDYAGPRKVLFLFLRATNKFFGDVTLW 110
Query: 162 FKYMEFCRQRKNGRMK-KVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ + ++ K + K+ ++ HP +W+ A EF N NV+AARALM LR
Sbjct: 111 LDYIHYAQKIKAVNIVGKICVAALQKHPNNAELWVVACDHEFSINANVSAARALMNRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVAL 250
+ + +W Y R+EL+Y+ KL AR L
Sbjct: 171 LNQENPVIWAAYFRLELSYMTKLFARSQIL 200
>SGD|S000002857 [details] [associations]
symbol:UTP6 "Nucleolar protein" species:4932 "Saccharomyces
cerevisiae" [GO:0030515 "snoRNA binding" evidence=IPI] [GO:0034388
"Pwp2p-containing subcomplex of 90S preribosome" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0032040 "small-subunit processome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000462
"maturation of SSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 SGD:S000002857
EMBL:U33007 GO:GO:0030515 EMBL:BK006938 Gene3D:1.25.40.10
EMBL:M95396 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472 GO:GO:0000480
GO:GO:0034388 eggNOG:COG5191 KO:K14557 InterPro:IPR013949
Pfam:PF08640 GeneTree:ENSGT00390000016493 OrthoDB:EOG4STWD9
PIR:S69728 RefSeq:NP_010737.1 ProteinModelPortal:Q02354 SMR:Q02354
DIP:DIP-6479N IntAct:Q02354 MINT:MINT-475620 STRING:Q02354
PaxDb:Q02354 PeptideAtlas:Q02354 EnsemblFungi:YDR449C GeneID:852060
KEGG:sce:YDR449C CYGD:YDR449c HOGENOM:HOG000065928 OMA:WISCAKY
NextBio:970334 Genevestigator:Q02354 GermOnline:YDR449C
Uniprot:Q02354
Length = 440
Score = 299 (110.3 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 68/209 (32%), Positives = 110/209 (52%)
Query: 47 QYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLD 106
+Y LE+ + E+DDL +GLFT++E+S I+K+R FE+RL DY+ YI YES ++
Sbjct: 5 RYYLEQCIPEMDDLVEKGLFTKNEVSLIMKKRTDFEHRLNSRGSSINDYIKYINYESNVN 64
Query: 107 ALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELWFKYME 166
LR R K I +V RI IY+ +F D++ W Y+
Sbjct: 65 KLRAKRCKRI-------LQVKKTNSLSDWSIQ--QRIGFIYQRGTNKFPQDLKFWAMYLN 115
Query: 167 FCRQRKNG----RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC 222
+ + R N ++ + Q+++ HP +WI A +E++ + N + R + QNGLR
Sbjct: 116 YMKARGNQTSYKKIHNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRFN 175
Query: 223 PTSEELWVEYLRMELTYLNKLKARKVALG 251
P +LW EY++ EL ++ KL R+ +G
Sbjct: 176 PDVPKLWYEYVKFELNFITKLINRRKVMG 204
Score = 38 (18.4 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 267 KRWINENKGLFMPLDGEVENTDGSQPENM---ESQKSVDLFRE 306
K +IN++KG + D ++ + N ES + + LF E
Sbjct: 283 KHYINKHKGYYAISDSKMNIELNKETLNYLFSESLRYIKLFDE 325
>UNIPROTKB|G4N9I4 [details] [associations]
symbol:MGG_03271 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 EMBL:CM001234
KO:K14557 InterPro:IPR013949 Pfam:PF08640 RefSeq:XP_003716695.1
EnsemblFungi:MGG_03271T0 GeneID:2676576 KEGG:mgr:MGG_03271
Uniprot:G4N9I4
Length = 411
Score = 280 (103.6 bits), Expect = 4.2e-22, P = 4.2e-22
Identities = 95/374 (25%), Positives = 170/374 (45%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
+AD ++ LE+ V +L + E + +FTR EI +V++R FE+R+ P D+LAY ++
Sbjct: 4 VADKARFFLEQAVPQLREFEDKEIFTRDEIRNLVRKRTDFEHRILAPGSKAPDFLAYADW 63
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E L+ LR R +G R++ GV R+ +I+ V R G + +W
Sbjct: 64 ERGLETLRARRCARLGI-----RQLTHQHA-------GVGRLGQIHERGVNRDPGSVHMW 111
Query: 162 FKYMEFCRQRKNG-RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+E Q+ R ++V + +R HP+ +W N ++ ARA G R
Sbjct: 112 RSYLEHLSQQGAAKRWRRVATRALRLHPQDAELWTLVGR-RSAANGDMDGARAYFLRGCR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWI---NENKGLF 277
C S +WVEY R+E+ +L K+++R G+ +R + AD+ I +++
Sbjct: 171 FCTKSVFIWVEYARVEMEWLAKVESR--GKGKKALAALRKEQSADDSDQIKLKDDSDESD 228
Query: 278 MPLDGE-VENTDGSQPENMESQKSVDLFREQGLRVLQT--IYSGAVEALPSSFNLRQRFF 334
DG + + + + + +E Q++ L E+ + L+ GA+ +Q+FF
Sbjct: 229 DDDDGNMIPDREMAAAKALERQQAPKLVDEEAVEKLEKSPALGGAIPRAIFDIATKQKFF 288
Query: 335 EIVEAT---NLAQS--------DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDG 383
E A N+ D+ +L M + F P WD R + +D
Sbjct: 289 EATSAEAFFNMFSRFIFTVEPCADLIQHVLDTMMKSFERHPATWDCYIRQPLLPV--QDF 346
Query: 384 TSEDIVPSQMQKAI 397
T+ D P +++++
Sbjct: 347 TTADF-PRALRESL 359
>RGD|1311017 [details] [associations]
symbol:Utp6 "UTP6, small subunit (SSU) processome component,
homolog (yeast)" species:10116 "Rattus norvegicus" [GO:0005622
"intracellular" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 RGD:1311017 GO:GO:0005730
GO:GO:0006396 Gene3D:1.25.40.10 GeneTree:ENSGT00390000016493
IPI:IPI00768927 Ensembl:ENSRNOT00000019044 Uniprot:F1M805
Length = 495
Score = 180 (68.4 bits), Expect = 8.9e-22, Sum P(3) = 8.9e-22
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 154 FKGDIELWFKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR 212
+K D++LW Y+ FC++ + K+ + ++ H P +WI AA WE + L+ +AR
Sbjct: 1 WKDDVQLWLSYIVFCKKWGTKAHLSKIFSNMLAIHSNKPALWIMAAKWEMEDRLSSESAR 60
Query: 213 ALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
L LR P +L+ EY RMEL + KL+ K
Sbjct: 61 QLFLRALRFHPECPKLYQEYFRMELMHAEKLRKEK 95
Score = 115 (45.5 bits), Expect = 8.9e-22, Sum P(3) = 8.9e-22
Identities = 46/204 (22%), Positives = 91/204 (44%)
Query: 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374
+Y AV + + I + + A+ D+ +I D+Q DP WD++AR +
Sbjct: 123 VYKSAVSKIKGA-EFHVSLLAISQLFDFAK--DLQKEIYDDLQALHTDDPLTWDYVARRE 179
Query: 375 MTDSVSKDGTSEDIVPSQMQKAIQ----------VYEEALKNVPSSMIFDLYTKFLMDMI 424
+ + S+ G + + S+ KA++ VYEEA++ +P+ ++ Y F ++
Sbjct: 180 L-EIESQPGEEQPV--SKQAKAVEMGRREERCCAVYEEAVRTLPTEAMWKCYITFCLERF 236
Query: 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL 484
+ K T L + + + KA + L+E +++ L L+ EA ++
Sbjct: 237 SKK---TSSVSLRGQ---RLERTMRAFRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQV 290
Query: 485 AAKLCSGKLSDSVQLWLLRISVEI 508
A + + DSV +W ++ V I
Sbjct: 291 A-EAGTELFKDSVTMWQTKLLVLI 313
Score = 81 (33.6 bits), Expect = 8.9e-22, Sum P(3) = 8.9e-22
Identities = 32/131 (24%), Positives = 59/131 (45%)
Query: 544 SLWLMALKFFMNQKHYFDK--LVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601
SLW+ ++ + + D + + AL++V G + +L ++ + G ++AR
Sbjct: 338 SLWISWAEWSESVESQEDTEAIFKRALLAVT----GANSITLKEKYLDWAYRSGGYKKAR 393
Query: 602 EMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS-LWR 659
++K L RP V ++ ++ E D +VN R+ +E AL + S LW
Sbjct: 394 AVFKS-LQESRPFSVEFFRKMMQFEKEQ----DSSKMVNLREYYERALREFGSTDSDLWL 448
Query: 660 DYYSTETKVSF 670
DY + E F
Sbjct: 449 DYMNEELNHPF 459
Score = 37 (18.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 637 LVNARKLFESALATYDQNTSLWRDYYST-ETKV 668
L+ + LF+ AL + T L++D + +TK+
Sbjct: 277 LLLRQDLFKEALQVAEAGTELFKDSVTMWQTKL 309
>DICTYBASE|DDB_G0279601 [details] [associations]
symbol:utp6 "tetratricopeptide-like helical
domain-containing protein (TPR)" species:44689 "Dictyostelium
discoideum" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=ISS] [GO:0030490 "maturation of SSU-rRNA" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
dictyBase:DDB_G0279601 GO:GO:0005730 GenomeReviews:CM000152_GR
GO:GO:0030515 Gene3D:1.25.40.10 EMBL:AAFI02000031 GO:GO:0030490
GO:GO:0005732 RefSeq:XP_641682.1 IntAct:Q54WN5
EnsemblProtists:DDB0233969 GeneID:8622090 KEGG:ddi:DDB_G0279601
eggNOG:COG5191 KO:K14557 OMA:MELTYIS InterPro:IPR013949
Pfam:PF08640 Uniprot:Q54WN5
Length = 609
Score = 215 (80.7 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 92/378 (24%), Positives = 179/378 (47%)
Query: 146 IYRLAVMRFKGDIELWFKYMEFCRQR--KNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203
++ A +F D LW + +R K G ++ + + P+ +W AA +EF+
Sbjct: 92 LFGSATKKFPKDEALWINALNIRMKRASKEGT-GRLFSIALSNLPRSAKLWKLAATFEFE 150
Query: 204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRD 263
N N+ AR L+Q G++ T + LW + MELTY++ L + + DK + + +
Sbjct: 151 VNKNIQNARNLIQAGIQFNKTDKSLWHYFFLMELTYISLLFSDITFI--DK-KIEEEEEE 207
Query: 264 ADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEA- 322
A + + K + D + T G + + + K L R Q + Q ++ A+++
Sbjct: 208 AIKLNLDSLRKSEKIEKDEFI--TFGKEILSADKLKQSSLIRGQ---IAQIVFRKAIKSS 262
Query: 323 LPSSFNLRQRFFEIV--------EATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARL 373
+ F+ R+ F++I ++ N + + + +IL + DF D K + +LA
Sbjct: 263 IGQDFDFRKHFYKIASKFLDIGKDSENPMGAGELLQKEILESLVTDFPNDDKTYIFLA-- 320
Query: 374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETR 432
S+ + +SE + ++ + ++ + L + S S +F+ Y F+ +I K +
Sbjct: 321 ----SIEQSKSSEPSLLKRLNNSTKILNQGLTIIKSESYLFN-YIHFIRQIIVDIK--LK 373
Query: 433 DSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK 492
+++L +E+ LL Y+ + L E Y+ L L+LGK ++A K++ + S K
Sbjct: 374 ENKL---IENITDILLKAYKYSIDNNILKESGYQYYIELLLELGKTNDAIKVSEE--SVK 428
Query: 493 L-SDSVQLWLLRISVEIR 509
L +S QLW RI++ I+
Sbjct: 429 LFKNSNQLWNQRINLLIK 446
Score = 215 (80.7 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 86/395 (21%), Positives = 177/395 (44%)
Query: 44 DVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYES 103
D V + ++++++E L G+ ++ E +I+K+R E ++ + K D+L YI+YE
Sbjct: 2 DRVNFSIDQLLEETSKLVSLGIISKQECKDIMKKREYHEIKIFNRNSHKSDFLTYIKYEL 61
Query: 104 QLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELWFK 163
+LD L R G+ + + + ++ A +F D LW
Sbjct: 62 ELDRLFHKR--------GKAKNIEFDYRLRSALRHAII----LFGSATKKFPKDEALWIN 109
Query: 164 YMEFCRQR--KNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
+ +R K G ++ + + P+ +W AA +EF+ N N+ AR L+Q G++
Sbjct: 110 ALNIRMKRASKEGT-GRLFSIALSNLPRSAKLWKLAATFEFEVNKNIQNARNLIQAGIQF 168
Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALG----EDKGTLVRDHRDADEKRWINENKGLF 277
T + LW + MELTY++ L + + E++ ++ + D+ K E K F
Sbjct: 169 NKTDKSLWHYFFLMELTYISLLFSDITFIDKKIEEEEEEAIKLNLDSLRKSEKIE-KDEF 227
Query: 278 MPLDGEVENTDG-SQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEI 336
+ E+ + D Q + Q + +FR + +++ + + + +F +I
Sbjct: 228 ITFGKEILSADKLKQSSLIRGQIAQIVFR----KAIKSSIGQDFDFRKHFYKIASKFLDI 283
Query: 337 -VEATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ 394
++ N + + + +IL + DF D K + +LA S+ + +SE + ++
Sbjct: 284 GKDSENPMGAGELLQKEILESLVTDFPNDDKTYIFLA------SIEQSKSSEPSLLKRLN 337
Query: 395 KAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKK 428
+ ++ + L + S S +F+ Y F+ +I K
Sbjct: 338 NSTKILNQGLTIIKSESYLFN-YIHFIRQIIVDIK 371
>ASPGD|ASPL0000074715 [details] [associations]
symbol:AN5010 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:BN001303 EnsemblFungi:CADANIAT00005382
OMA:ARTYMQR Uniprot:C8V8L4
Length = 264
Score = 174 (66.3 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 31/71 (43%), Positives = 47/71 (66%)
Query: 184 IRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL 243
+R HP +WIYAA + + + +++ AR MQ GLR C TS +LW++Y ++EL Y+ KL
Sbjct: 4 LRLHPTKADLWIYAAHYSVEDHADMSQARTYMQRGLRFCKTSRKLWIQYAKLELIYITKL 63
Query: 244 KARKVALGEDK 254
AR+ LG D+
Sbjct: 64 VARQRILGLDE 74
Score = 41 (19.5 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 643 LFESALATYDQNTSLWRDYY 662
+F+SA+ T+D N +++
Sbjct: 134 IFDSAIKTFDYNDCFAHEFF 153
>FB|FBgn0030081 [details] [associations]
symbol:CG7246 species:7227 "Drosophila melanogaster"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR003107 SMART:SM00386 GO:GO:0022008
EMBL:AE014298 GO:GO:0005622 GO:GO:0006396 KO:K14557
InterPro:IPR013949 Pfam:PF08640 GeneTree:ENSGT00390000016493
EMBL:AY071633 RefSeq:NP_572520.1 UniGene:Dm.5351 SMR:Q9W397
EnsemblMetazoa:FBtr0071353 GeneID:31833 KEGG:dme:Dmel_CG7246
UCSC:CG7246-RA FlyBase:FBgn0030081 InParanoid:Q9W397 OMA:WVEYLRM
OrthoDB:EOG4J0ZQ6 GenomeRNAi:31833 NextBio:775553 Uniprot:Q9W397
Length = 602
Score = 182 (69.1 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 45/188 (23%), Positives = 90/188 (47%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ + ER++ E + ++ +FT ++ EIV +R + ++ + DYL +I Y
Sbjct: 1 MAEFIAEMQERLLPEYEQMKNYSVFTADQVREIVSRRERLFLKINKSHQSITDYLDFILY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELW 161
E + + + D+ ++ V RI+ +YR A+ +F D LW
Sbjct: 61 E------KHMHMTIV--DKEKKMHVKLTGLKASIAT----RIMRLYREALAKFNHDRRLW 108
Query: 162 FKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN-LNVTAARALMQNGLR 220
+++F R+ + + +++ +H P +W+ AA W ++ N LN+ + ++ GL+
Sbjct: 109 SNWIKFSRKSNPVEVAGIYEKMLLYHGDSPDLWVDAALWLYEFNRLNIDRVKDILLRGLQ 168
Query: 221 VCPTSEEL 228
P SE L
Sbjct: 169 RHPDSEAL 176
Score = 132 (51.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 102/488 (20%), Positives = 202/488 (41%)
Query: 200 W-EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV 258
W +F N + + L S +LWV+ + L N+L +V K L+
Sbjct: 111 WIKFSRKSNPVEVAGIYEKMLLYHGDSPDLWVD-AALWLYEFNRLNIDRV-----KDILL 164
Query: 259 RDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG 318
R + + +N+ M + + + + + EN S++ + L R ++ +Y
Sbjct: 165 RGLQRHPDSEALNKCFFDIMLKEAALASNERNLAENTLSEQDIKLER------VEAVYRN 218
Query: 319 AVEALPSSFNLRQRFFEIVEATNLAQ--SDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376
++ ++ F +++E+ Q + + I+ DMQ F +P WD LA+ ++
Sbjct: 219 SM----ANITQLDYFVKLLESCEDHQELTGKLQRMIIDDMQEKFPREPGLWDLLAQRELR 274
Query: 377 DSVSKDGTSEDIVPSQMQ----KAIQVYEEALKN-------VPSSMIFDLYTKFLMDMIA 425
D ED+ S + K+ V +LK V S + +L T + +M
Sbjct: 275 GFHLGDLEEEDLDTSDEEPASKKSRSVNGRSLKRRIQLCVTVYKSAVEELQTTEMWNMYL 334
Query: 426 PKKEETRDSELPSHV--EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARK 483
+ + ++ L +++ MG + H Y TL L R+
Sbjct: 335 DAMLALNSDGKTERILKQQCLADALQAGHRSQLMG-----VKH-YATLRKMLCTAPSGRE 388
Query: 484 LAAKLCSGKLSD--SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541
A + + L + SV++ L ++ I+ S ++ L I+EL I + + E
Sbjct: 389 AAVTILTEALKNDSSVEMHELLLATHIQ---------SDSEPL-IYELFNKIQKSMGS-E 437
Query: 542 SESLWLMALKFFMNQKHYFD--KLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ 599
+ LW + ++ ++ +L EI ++ K E G L S + + Q+ +++
Sbjct: 438 ALPLWRSVILYYRTRQDSLGARRLDEIYGLA-CKAAWPEFG-ELRSDYLRYLWQERSVEE 495
Query: 600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTS--L 657
AR+ Y + LP L L++ ++LE++ A+ D+ SL R ++ +A Y T +
Sbjct: 496 ARKEYAKLAILPPMSLALHRQMVQLESSAAAC-DQASLKYWRMCYDF-MACYFGKTQPRV 553
Query: 658 WRDYYSTE 665
W +Y + E
Sbjct: 554 WVEYLAFE 561
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 125 (49.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 81/358 (22%), Positives = 140/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 137 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 190
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 191 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 250
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + N+ AR + + + P E+ W Y+ EL Y +AR
Sbjct: 251 PRVNQFW-YKYTYMEEMLGNIAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 308
Query: 248 VALGEDKGTLVRDHRDADEKRWIN-----ENKGLFMPLDGEVENT-DGSQPENMESQKSV 301
+ + LV H D K WI E G F E + E+M+ V
Sbjct: 309 IYYFLNSPELVLVHPDV--KNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYV 366
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S ++ F + I E + D I+S
Sbjct: 367 AFAKFEENQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK-KFGDRRGIEDIIVSK 424
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 425 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAETVR--------EVYERAIANVP 471
Score = 70 (29.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 30/123 (24%), Positives = 54/123 (43%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMY 604
+WL+ +F + QK+ V ++L+ + ++ L I L +Q + R++Y
Sbjct: 524 MWLLYAQFEIRQKNL---PVSVSLLGTSIGKCPKN--KLFKGYIELELQLREFDRCRKLY 578
Query: 605 KRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDYY 662
++FL + ELE L GD + AR ++E A++ D LW+ Y
Sbjct: 579 EKFLEFGPENCTSWIKFAELETIL---GD---IERARAIYELAISQPRLDMPEVLWKSYI 632
Query: 663 STE 665
E
Sbjct: 633 DFE 635
Score = 53 (23.7 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 28/102 (27%), Positives = 43/102 (42%)
Query: 386 EDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS 445
E++ ++ QVY+ +L+ +P + K + + A + E R LP V S
Sbjct: 493 EELEAKDPERTRQVYQASLELIPHKKF--TFAKMWL-LYA--QFEIRQKNLPVSV----S 543
Query: 446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK 487
L T K C + Y+ L LQL + D RKL K
Sbjct: 544 LLGTSIGK-----CPKNKLFKGYIELELQLREFDRCRKLYEK 580
Score = 45 (20.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 617 LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTET 666
L++ IELE L D+ RKL+E L +N + W + ET
Sbjct: 557 LFKGYIELELQLREF-DR-----CRKLYEKFLEFGPENCTSWIKFAELET 600
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 14/63 (22%), Positives = 32/63 (50%)
Query: 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647
I+ I+++ ++ R +Y+R L + + ++ + + E + G SL R+++E A
Sbjct: 632 IDFEIEQEETERTRNLYRRLLQRTQH-VKVWISFAQFELSSRKEG---SLAKCRQIYEEA 687
Query: 648 LAT 650
T
Sbjct: 688 NKT 690
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 119 (46.9 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 79/356 (22%), Positives = 140/356 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P Q + +E +L+ + LRK+ D R+ R
Sbjct: 48 QLLREAKERELELLPPPP--QQKITDVE---ELNDYK-LRKRKTFEDNIRKNRTVISNWI 101
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ ++ LW KY E + R+ + + + I
Sbjct: 102 KYAQWEESLKEIQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTL 161
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + NV +R + + + P E+ W Y+ EL Y +AR
Sbjct: 162 PRVNQFW-YKYTYMEEMLGNVAGSRQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 219
Query: 248 VALGEDKGTLVRDHRDADEKRWIN----ENKGLFMPLDGEVEN--TDGSQPENMESQKSV 301
+ + LV H D K WI E K + +V + E+M+ V
Sbjct: 220 IYIA----LLVIVHPDV--KNWIKYARFEEKHCYFAHARKVYERAVEFFGEEHMDEHLYV 273
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPS--SFNLRQRF--FEIVEATNLAQSDDMHDKIL 353
F E + ++ IY A++ +P + NL + + FE D + K
Sbjct: 274 AFAKFEENQKEFERVRVIYKYALDRIPKQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRR 333
Query: 354 SDMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 334 FQYEEEVKANPHNYDAWFDYLRLVES---DADAETVR--------EVYERAIANVP 378
Score = 73 (30.8 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 34/124 (27%), Positives = 53/124 (42%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+WL+ +F + QK+ L AL S+ K + L I L +Q + R++
Sbjct: 431 IWLLYAQFEIRQKNL--PLARRALGTSIGKCPKNK----LFKGYIELELQLREFDRCRKL 484
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD D AR ++E A++ D LW+ Y
Sbjct: 485 YEKFLEFAPENCTSWIKFAELETIL---GDID---RARAIYELAISQPRLDMPEVLWKSY 538
Query: 662 YSTE 665
E
Sbjct: 539 IDFE 542
Score = 51 (23.0 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 14/60 (23%), Positives = 33/60 (55%)
Query: 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647
I+ I+++ ++ R +Y+R L + + ++ + + E S G ++SL R+++E A
Sbjct: 539 IDFEIEQEEYEKTRNLYRRLLQRTQH-VKVWISFAQFE---LSAGKEESLSKCRQIYEEA 594
Score = 46 (21.3 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAK 487
C + Y+ L LQL + D RKL K
Sbjct: 459 CPKNKLFKGYIELELQLREFDRCRKLYEK 487
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 109 (43.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 37/172 (21%), Positives = 78/172 (45%)
Query: 78 RRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXX 137
R+ E +L RP+ +K A I+ ++ LR R++ ++++
Sbjct: 17 RKDTEVKLPRPTRVKNKTPAPIQITAE-QILREARERQEAEIRPPKQKITDSTELSDYR- 74
Query: 138 XGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIY 196
+ R E + + R + +I++W KY ++ +K+ R + V + I + +W+
Sbjct: 75 --LRRRKE-FEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLK 131
Query: 197 AAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
A +E + V +AR + + + P ++LW +Y+ ME N AR++
Sbjct: 132 YAEFEMKNKF-VNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQI 182
Score = 80 (33.2 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 56/279 (20%), Positives = 109/279 (39%)
Query: 392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVY 451
++++A +Y+ AL ++P DLY KF +A +K+ D E + + Y
Sbjct: 278 EVERARFIYKFALDHIPKGRAEDLYRKF----VAFEKQYG-DKE--GIEDAIVGKRRFQY 330
Query: 452 EKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK-LCSGKLSDSVQLWLLRISVEIRC 510
E D YV L +G D R++ + + + ++ + W I + I
Sbjct: 331 EDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINY 390
Query: 511 VTRNSFSPSKADILSIFELLK-CI-LTKVSALESESLWLMALKFFMNQKHYFD--KLVEI 566
DI ++ + C+ L S +WL+A +F + Q + +++
Sbjct: 391 ALFEEIETE--DIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGN 448
Query: 567 ALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELEN 626
A+ KD + I + +Q + + R++Y+R+L + ELE
Sbjct: 449 AIGKAPKD-------KIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELER 501
Query: 627 NLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTE 665
+L ++ + + + AL D LW+ Y E
Sbjct: 502 SLVET-ERARAIFELAISQPAL---DMPELLWKAYIDFE 536
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 113 (44.8 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 81/358 (22%), Positives = 143/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 181 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 234
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 235 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 294
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + NV AR + + + P E+ W Y+ EL Y +AR
Sbjct: 295 PRVNQFW-YKYTYMEEMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 352
Query: 248 VALGEDKGTLVRDHRDADEKRWIN----ENKGLFMPLDGEVEN--TDGSQPENMESQKSV 301
+ ++ LV H D K WI E K + +V + E+M+ V
Sbjct: 353 IY---ERFVLV--HPDV--KNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 405
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S + ++ F + I E + D I+S
Sbjct: 406 AFAKFEENQKEFERVRVIYKYALDRI-SKQDAQELFKNYTIFEK-KFGDRRGIEDIIVSK 463
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 464 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAEAVR--------EVYERAIANVP 510
Score = 71 (30.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 33/124 (26%), Positives = 53/124 (42%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+W++ +F + QK+ L AL S+ K + L I L +Q + R++
Sbjct: 563 MWILYAQFEIRQKNL--SLARRALGTSIGKCPKNK----LFKVYIELELQLREFDRCRKL 616
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD D AR ++E A++ D LW+ Y
Sbjct: 617 YEKFLEFGPENCTSWIKFAELETIL---GDID---RARAIYELAISQPRLDMPEVLWKSY 670
Query: 662 YSTE 665
E
Sbjct: 671 IDFE 674
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 113 (44.8 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 81/358 (22%), Positives = 143/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 193 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 246
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 247 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 306
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + NV AR + + + P E+ W Y+ EL Y +AR
Sbjct: 307 PRVNQFW-YKYTYMEEMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 364
Query: 248 VALGEDKGTLVRDHRDADEKRWIN----ENKGLFMPLDGEVEN--TDGSQPENMESQKSV 301
+ ++ LV H D K WI E K + +V + E+M+ V
Sbjct: 365 IY---ERFVLV--HPDV--KNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYV 417
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S + ++ F + I E + D I+S
Sbjct: 418 AFAKFEENQKEFERVRVIYKYALDRI-SKQDAQELFKNYTIFEK-KFGDRRGIEDIIVSK 475
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 476 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAEAVR--------EVYERAIANVP 522
Score = 71 (30.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 33/124 (26%), Positives = 53/124 (42%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+W++ +F + QK+ L AL S+ K + L I L +Q + R++
Sbjct: 575 MWILYAQFEIRQKNL--SLARRALGTSIGKCPKNK----LFKVYIELELQLREFDRCRKL 628
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD D AR ++E A++ D LW+ Y
Sbjct: 629 YEKFLEFGPENCTSWIKFAELETIL---GDID---RARAIYELAISQPRLDMPEVLWKSY 682
Query: 662 YSTE 665
E
Sbjct: 683 IDFE 686
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 117 (46.2 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 81/358 (22%), Positives = 140/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 116 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 169
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 170 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 229
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + N+ AR + + + P E+ W Y+ EL Y +AR
Sbjct: 230 PRVNQFW-YKYTYMEEMLGNIAGARQVFERWMEWRP-EEQAWHSYINFELRYKEVDRART 287
Query: 248 VALGEDKGTLVRDHRDADEKRWIN-----ENKGLFMPLDGEVENT-DGSQPENMESQKSV 301
+ +LV H D K WI E G F E + E+M+ V
Sbjct: 288 I-YERYIHSLVLVHPDV--KNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYV 344
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S ++ F + I E + D I+S
Sbjct: 345 AFAKFEENQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK-KFGDRRGIEDIIVSK 402
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 403 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAETVR--------EVYERAIANVP 449
Score = 65 (27.9 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 32/124 (25%), Positives = 52/124 (41%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+WL+ +F + QK+ AL S+ K + L I L +Q + R++
Sbjct: 502 MWLLYAQFEIRQKNL--PFARRALGTSIGKCPKNK----LFKGYIELELQLREFDRCRKL 555
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD + AR ++E A++ D LW+ Y
Sbjct: 556 YEKFLEFGPENCTSWIKFAELETIL---GD---IERARAIYELAISQPRLDMPEVLWKSY 609
Query: 662 YSTE 665
E
Sbjct: 610 IDFE 613
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 116 (45.9 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 81/358 (22%), Positives = 141/358 (39%)
Query: 73 EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXX 132
+++++ ++ E L P P ++ I E +L+ + LRK+ D R+ R
Sbjct: 73 QLLREAKERELELLPPPPQQK-----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWI 126
Query: 133 XXX----XXXGVARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFH 187
+ R IY A+ +I LW KY E + R+ + + + I
Sbjct: 127 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTL 186
Query: 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247
P+V W Y + + N+ AR + + + P E+ W Y+ EL Y +AR
Sbjct: 187 PRVNQFW-YKYTYMEEMLGNIAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRART 244
Query: 248 VALGEDKGTLVRDHRDADEKRWIN-----ENKGLFMPLDGEVENT-DGSQPENMESQKSV 301
+ ++ LV H D K WI E G F E + E+M+ V
Sbjct: 245 IY---ERFVLV--HPDV--KNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYV 297
Query: 302 DL--FRE--QGLRVLQTIYSGAVEALPSSFNLRQRF--FEIVEATNLAQSDDMHDKILS- 354
F E + ++ IY A++ + S ++ F + I E + D I+S
Sbjct: 298 AFAKFEENQKEFERVRVIYKYALDRI-SKQEAQELFKNYTIFEK-KFGDRRGIEDIIVSK 355
Query: 355 ---DMQRDFLVDPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+ + +P +D W L++ +S D +E + +VYE A+ NVP
Sbjct: 356 RRFQYEEEVKANPHNYDAWFDYLRLVES---DAEAETVR--------EVYERAIANVP 402
Score = 65 (27.9 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 32/124 (25%), Positives = 52/124 (41%)
Query: 545 LWLMALKFFMNQKHYFDKLVEIAL-ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREM 603
+WL+ +F + QK+ AL S+ K + L I L +Q + R++
Sbjct: 455 MWLLYAQFEIRQKNL--PFARRALGTSIGKCPKNK----LFKGYIELELQLREFDRCRKL 508
Query: 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YDQNTSLWRDY 661
Y++FL + ELE L GD + AR ++E A++ D LW+ Y
Sbjct: 509 YEKFLEFGPENCTSWIKFAELETIL---GD---IERARAIYELAISQPRLDMPEVLWKSY 562
Query: 662 YSTE 665
E
Sbjct: 563 IDFE 566
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 87 (35.7 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 22/99 (22%), Positives = 48/99 (48%)
Query: 151 VMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT 209
+ R + +I++W KY ++ + + R + V + + + +W+ A +E + V
Sbjct: 71 IRRARWNIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKF-VN 129
Query: 210 AARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
AR + + + P ++LW +Y+ ME N AR++
Sbjct: 130 NARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQI 168
Score = 85 (35.0 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 61/280 (21%), Positives = 111/280 (39%)
Query: 392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVY 451
++++A +Y+ AL ++ +LY KF +A +K+ D E + + Y
Sbjct: 265 EVERARFIYKFALDHIRKGRAEELYKKF----VAFEKQYG-DKE--GIEDAIVGKKRFEY 317
Query: 452 EKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK-LCSGKLSDSVQLWLLRISVEIRC 510
E + L D YV L +G D R++ + + + + + W I + I
Sbjct: 318 EDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINY 377
Query: 511 VTRNSFSPSKAD-ILSIF-ELLKCIL-TKVSALESESLWLMALKFFMNQKHYFDKLVEIA 567
+ ++ E LK I TK S + +WL+A ++ + Q + L
Sbjct: 378 ALYEEIETKDVERTRDVYRECLKLIPHTKFSFAK---IWLLAAEYEIRQLN----LTGAR 430
Query: 568 LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN 627
I + G + I + ++ I + R++Y+RFL ++N E E +
Sbjct: 431 QI-LGNAIGKAPKVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEIS 489
Query: 628 LASVGDKDSLVNARKLFESALA--TYDQNTSLWRDYYSTE 665
LA AR +FE A++ D LW+ Y E
Sbjct: 490 LAETE------RARAIFELAISQPALDMPELLWKTYIDFE 523
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 106 (42.4 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 65/287 (22%), Positives = 112/287 (39%)
Query: 140 VARILEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAA 198
V R IY A+ +I LW KY E + R+ + + + I P+V W Y
Sbjct: 96 VQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFW-YKY 154
Query: 199 AWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV 258
+ + N+ R + + + P E+ W Y+ EL Y KAR + +K LV
Sbjct: 155 TYMEEMLGNIAGCRQVFERWMEWEP-EEQAWHSYINFELRYKEVDKARSIY---EKA-LV 209
Query: 259 RDHRDADEKRWIN----ENKGLFMPLDGEV-ENTDGSQPENMESQKSVDLF-----REQG 308
H + K WI E K ++ +V E E S+ F +++
Sbjct: 210 MVHPEV--KNWIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKE 267
Query: 309 LRVLQTIYSGAVEALPSSFNLRQRFFE--IVEATNLAQSDDMHDKILS----DMQRDFLV 362
++ IY A++ +P Q F+ V + D I+S + +
Sbjct: 268 FERVRVIYKYALDRIPKQ--QAQELFKNYTVFEKRFGDRRGIEDVIVSKRRFQYEEEVKA 325
Query: 363 DPKYWD-WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408
+P +D W L++ +S D ++ + +VYE A+ N+P
Sbjct: 326 NPHNYDAWFDYLRLVES---DADADTVR--------EVYERAIANIP 361
Score = 64 (27.6 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647
I L +Q + R++Y+++L + ELE L GD D +R +FE A
Sbjct: 452 IELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETIL---GDTD---RSRAIFELA 505
Query: 648 LAT--YDQNTSLWRDYYSTE 665
+ D LW+ Y E
Sbjct: 506 IGQPRLDMPEVLWKSYIDFE 525
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 676 664 0.00098 120 3 11 22 0.37 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 626 (67 KB)
Total size of DFA: 358 KB (2178 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.87u 0.12s 56.99t Elapsed: 00:00:03
Total cpu time: 56.88u 0.12s 57.00t Elapsed: 00:00:03
Start: Fri May 10 08:41:35 2013 End: Fri May 10 08:41:38 2013