BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005817
(676 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NYH9|UTP6_HUMAN U3 small nucleolar RNA-associated protein 6 homolog OS=Homo sapiens
GN=UTP6 PE=1 SV=2
Length = 597
Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 163/635 (25%), Positives = 282/635 (44%), Gaps = 91/635 (14%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+ EI I+K+ EY+++R + K+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ IG KK + S V R+ +++ A ++K D++LW
Sbjct: 61 EINLLELIQRRRTRIGYS----------FKKDEIENSIVHRVQGVFQRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ R+ KV + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL 280
P +L+ EY RMEL + KL+ K +K ++
Sbjct: 171 FHPECPKLYKEYFRMELMHAEKLRKEKEEF--EKASM----------------------- 205
Query: 281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT 340
+VEN D S+ E ++ + + IY +V + + I +
Sbjct: 206 --DVENPDYSE-EILKGE------------LAWIIYKNSVSIIKGA-EFHVSLLSIAQLF 249
Query: 341 NLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDI----VPSQMQ 394
+ A+ D+ +I D+Q DP WD++AR L++ + T++ V + +
Sbjct: 250 DFAK--DLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAVEVGRKEE 307
Query: 395 KAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454
+ VYEEA+K +P+ ++ Y F ++ T+ S + +TV+ KA
Sbjct: 308 RCCAVYEEAVKTLPTEAMWKCYITFCLERF------TKKSNSGFLRGKRLERTMTVFRKA 361
Query: 455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRN 514
+ L+E + L L EA ++A + DS +W L++ V I
Sbjct: 362 HELKLLSECQYKQLSVSLLCYNFLREALEVAVA-GTELFRDSGTMWQLKLQVLI-----E 415
Query: 515 SFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK--LVEIALISVA 572
S SP DI +FE L L LW+ ++ K D + + AL++V
Sbjct: 416 SKSP---DIAMLFEEAFVHLKPQVCL---PLWISWAEWSEGAKSQEDTEAVFKKALLAVI 469
Query: 573 KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASV 631
G +L + ++ + G ++AR ++K L RP V ++ I+ E S
Sbjct: 470 ----GADSVTLKNKYLDWAYRSGGYKKARAVFKS-LQESRPFSVDFFRKMIQFEKEQESC 524
Query: 632 GDKDSLVNARKLFESALATY-DQNTSLWRDYYSTE 665
++ N R+ +E AL + ++ LW DY E
Sbjct: 525 ----NMANIREYYERALREFGSADSDLWMDYMKEE 555
>sp|Q8VCY6|UTP6_MOUSE U3 small nucleolar RNA-associated protein 6 homolog OS=Mus musculus
GN=Utp6 PE=2 SV=1
Length = 597
Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 163/645 (25%), Positives = 287/645 (44%), Gaps = 98/645 (15%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+++Q R+E + EL+ LER GLF+ EI I+K+ EY++ R + LK+D++ Y++Y
Sbjct: 1 MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
E L L + R+ R+ KK ++S V R+ ++ A ++K D++LW
Sbjct: 61 EINLLELIQRRRA----------RIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLW 110
Query: 162 FKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ FC++ + K+ + ++ H P +WI AA WE + L+ +AR L LR
Sbjct: 111 LSYIVFCKKWGTKTHLSKIFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL 280
P +L+ EY RMEL + KL+ K +K + D D D I L
Sbjct: 171 FHPECPKLYQEYFRMELMHAEKLRKEKQEF--EKAAM--DMGDFDHPEEI---------L 217
Query: 281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT 340
GE + + IY ++ + + I +
Sbjct: 218 KGE---------------------------LARIIYKNSISKIKGA-EFHVSLLAIAQLF 249
Query: 341 NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ-- 398
+ A+ D+ +I D+Q DP WD++AR ++ + S+ G + + S+ KA++
Sbjct: 250 DFAK--DLQKEIYDDLQALHTDDPLTWDYVARREL-EIESQPGEEQPV--SKQAKAVEMG 304
Query: 399 --------VYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450
VYEEA+K +P+ ++ Y F ++ + K S +P + + +
Sbjct: 305 RREERCCAVYEEAVKALPTEAMWKCYITFCLERFSKK-----TSSVPLRGQR-LERTMLA 358
Query: 451 YEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510
+ KA + L+E +++ L L+ EA ++ A+ + DSV +W ++ V I
Sbjct: 359 FRKAHELKLLSEVQYKQWIDLLLRQDLFKEALQV-AEAGTELFKDSVTMWQTKLQVLI-- 415
Query: 511 VTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK--LVEIAL 568
+S SP D+ FE L L LW+ ++ + K D + + A+
Sbjct: 416 ---DSKSP---DVEMRFEEAFAHLKPQVCL---PLWISWAEWSESAKSQEDTEAIFKKAI 466
Query: 569 ISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV-LYQNCIELENN 627
I+V G S +L ++ + G ++AR ++K L RP V ++ ++ E
Sbjct: 467 IAVT----GASSVTLKEKYLDWAYRSGGYKKARAVFKS-LQESRPFSVEFFRKMMQFEKE 521
Query: 628 LASVGDKDSLVNARKLFESALATYDQNTS-LWRDYYSTETKVSFS 671
+ +VN R+ +E AL + + S LW DY E F
Sbjct: 522 ----QEPCKMVNLREYYERALREFGTSDSDLWMDYIKEELNHPFG 562
>sp|O60188|UTP6_SCHPO U3 small nucleolar RNA-associated protein 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=utp6 PE=3 SV=1
Length = 488
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 11/206 (5%)
Query: 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEY 101
MA+ VQY +E+ V EL+DL + +F R EI+ I+K RR FE +L R D+L+YI+Y
Sbjct: 1 MAEKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQY 60
Query: 102 ESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161
E L+ LR R +R++ K ++SD++G ++L ++ A +F GD+ LW
Sbjct: 61 EINLETLR----------AKRHKRLNITGKITISDYAGPRKVLFLFLRATNKFFGDVTLW 110
Query: 162 FKYMEFCRQRKNGRM-KKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220
Y+ + ++ K + K+ ++ HP +W+ A EF N NV+AARALM LR
Sbjct: 111 LDYIHYAQKIKAVNIVGKICVAALQKHPNNAELWVVACDHEFSINANVSAARALMNRALR 170
Query: 221 VCPTSEELWVEYLRMELTYLNKLKAR 246
+ + +W Y R+EL+Y+ KL AR
Sbjct: 171 LNQENPVIWAAYFRLELSYMTKLFAR 196
>sp|Q02354|UTP6_YEAST U3 small nucleolar RNA-associated protein 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP6 PE=1
SV=2
Length = 440
Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 116/210 (55%), Gaps = 13/210 (6%)
Query: 46 VQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQL 105
+Y LE+ + E+DDL +GLFT++E+S I+K+R FE+RL DY+ YI YES +
Sbjct: 4 TRYYLEQCIPEMDDLVEKGLFTKNEVSLIMKKRTDFEHRLNSRGSSINDYIKYINYESNV 63
Query: 106 DALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYM 165
+ LR R K I + K S+SD+S RI IY+ +F D++ W Y+
Sbjct: 64 NKLRAKRCKRI---------LQVKKTNSLSDWSIQQRIGFIYQRGTNKFPQDLKFWAMYL 114
Query: 166 EFCRQRKN----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221
+ + R N ++ + Q+++ HP +WI A +E++ + N + R + QNGLR
Sbjct: 115 NYMKARGNQTSYKKIHNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRF 174
Query: 222 CPTSEELWVEYLRMELTYLNKLKARKVALG 251
P +LW EY++ EL ++ KL R+ +G
Sbjct: 175 NPDVPKLWYEYVKFELNFITKLINRRKVMG 204
>sp|Q54WN5|UTP6_DICDI U3 small nucleolar RNA-associated protein 6 homolog
OS=Dictyostelium discoideum GN=utp6 PE=1 SV=1
Length = 609
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 115/490 (23%), Positives = 222/490 (45%), Gaps = 69/490 (14%)
Query: 44 DVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYES 103
D V + ++++++E L G+ ++ E +I+K+R E ++ + K D+L YI+YE
Sbjct: 2 DRVNFSIDQLLEETSKLVSLGIISKQECKDIMKKREYHEIKIFNRNSHKSDFLTYIKYEL 61
Query: 104 QLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFK 163
+LD R K+ ++ + R+ ++ ++ F A +F D LW
Sbjct: 62 ELD--RLFHKRGKAKNIEFDYRLRSALRHAIILFGS----------ATKKFPKDEALWIN 109
Query: 164 YMEFCRQRKN----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219
+ +R + GR+ + + P+ +W AA +EF+ N N+ AR L+Q G+
Sbjct: 110 ALNIRMKRASKEGTGRLFSIALSNL---PRSAKLWKLAATFEFEVNKNIQNARNLIQAGI 166
Query: 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMP 279
+ T + LW + MELTY+ L D D+K E + + +
Sbjct: 167 QFNKTDKSLWHYFFLMELTYI--------------SLLFSDITFIDKKIEEEEEEAIKLN 212
Query: 280 LDG-----EVEN----TDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVE-ALPSSFNL 329
LD ++E T G + + + K L R Q + Q ++ A++ ++ F+
Sbjct: 213 LDSLRKSEKIEKDEFITFGKEILSADKLKQSSLIRGQ---IAQIVFRKAIKSSIGQDFDF 269
Query: 330 RQRFFEIV--------EATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS 380
R+ F++I ++ N + + + +IL + DF D K + +LA S+
Sbjct: 270 RKHFYKIASKFLDIGKDSENPMGAGELLQKEILESLVTDFPNDDKTYIFLA------SIE 323
Query: 381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHV 440
+ +SE + ++ + ++ + L + S Y F+ +I K ++++L +
Sbjct: 324 QSKSSEPSLLKRLNNSTKILNQGLTIIKSESYLFNYIHFIRQIIVDIK--LKENKL---I 378
Query: 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL-SDSVQL 499
E+ LL Y+ + L E Y+ L L+LGK ++A K++ + S KL +S QL
Sbjct: 379 ENITDILLKAYKYSIDNNILKESGYQYYIELLLELGKTNDAIKVSEE--SVKLFKNSNQL 436
Query: 500 WLLRISVEIR 509
W RI++ I+
Sbjct: 437 WNQRINLLIK 446
>sp|Q5AED6|CLF1_CANAL Pre-mRNA-splicing factor CLF1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CLF1 PE=3 SV=2
Length = 758
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 24/118 (20%)
Query: 157 DIELWFKYMEFCRQRKN-----GRMKKVLAQVIRFHPKVPGV--------WIYAAAWEFD 203
D + W+KYM + N KKV V+ H K + WI+ A WE
Sbjct: 385 DYDSWWKYMTLLQNSSNKSDLENAFKKVTGNVV--HDKHKSIKWRRYIMFWIWYAFWEEM 442
Query: 204 HNLNVTAARALMQNGLRVCP----TSEELWVEYLRMELTYLNK--LKARKV---ALGE 252
N N +AR + N L+V P T ++W+ Y EL KARK+ A+G+
Sbjct: 443 TNNNPDSAREIWNNCLKVIPHKSFTFAKVWIGYSEFELRNSEDGLAKARKILGRAIGQ 500
Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
G W A WE ++N + AR++++ L V W++Y+++EL++ N AR +
Sbjct: 121 GQWTRYAKWEIENNHDFPRARSILERALDVNIQHVPFWIQYIQLELSHKNINHARNL 177
>sp|Q6BSP7|CLF1_DEBHA Pre-mRNA-splicing factor CLF1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CLF1 PE=3 SV=2
Length = 714
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
G W+ A WE HN + AR++ + L V W Y++ EL++ N AR +
Sbjct: 69 GQWLRYAKWEVKHNHDFPRARSIFERALEVNVQHIPFWTHYIQFELSHKNITHARNL 125
>sp|P19735|PRP6_YEAST Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRP6 PE=1 SV=1
Length = 899
Score = 39.3 bits (90), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 175 RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234
+M+ +L + P P WI +A E + + A+ +++NG + CP S ++W+E +R
Sbjct: 225 KMRTILKSYRKADPTNPQGWIASARLE-EKARKFSVAKKIIENGCQECPRSSDIWLENIR 283
Query: 235 M 235
+
Sbjct: 284 L 284
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 145 EIYRLAVMRFKGDIELWFKYMEFC-RQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203
E+Y + RF+ + +W KY F R+ K +V+ + + PK V + A + +
Sbjct: 1715 ELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLE 1774
Query: 204 HNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
L + ARA+ ++ L + P ++W Y+ M + + ++ +AR +
Sbjct: 1775 FQLGDAERARAIFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAI 1820
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 145 EIYRLAVMRFKGDIELWFKYMEFCRQR-KNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203
E+Y + RF+ + +W KY F R + G +VL + + P V + + +
Sbjct: 1703 ELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLE 1762
Query: 204 HNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
L +V A+A+ +N L P ++W Y+ M + + ++ R +
Sbjct: 1763 FQLGDVERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQTAVRDI 1808
>sp|Q12381|PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp1 PE=1 SV=1
Length = 906
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 175 RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234
+ +K+L VI +PK W+ AA E N ++ A++L+ G C SE++W+E +R
Sbjct: 262 KARKLLQSVIETNPKHASGWVAAARLEEVAN-KLSQAQSLILKGCENCSRSEDVWLEAIR 320
Query: 235 M 235
+
Sbjct: 321 L 321
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 150 AVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT 209
AV + + LW + + Q ++ K+++ + + F+P +W A E + V
Sbjct: 334 AVKKLPKSVTLWLEAEKLENQAQH--KKRIIKKALEFNPTSVSLWKEAVNLEEE----VD 387
Query: 210 AARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDH 261
AR L+ + + P S +LW+ R+E TY N A+KV L + + T+ H
Sbjct: 388 NARILLARAVELIPMSIDLWLALARLE-TYEN---AKKV-LNKARQTIRTSH 434
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 37.0 bits (84), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 145 EIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203
E+Y + RF+ + +W KY F R+ + +VL + + P V + A + +
Sbjct: 1712 ELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLE 1771
Query: 204 HNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
L + A+A+ +N L P ++W Y+ M + + ++ R +
Sbjct: 1772 FQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDI 1817
>sp|O94906|PRP6_HUMAN Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1
Length = 941
Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 179 VLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+L V +P P WI +A E + + AR L+ G +CP SE++W+E R++
Sbjct: 297 LLKSVRETNPHHPPAWIASARLE-EVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQ 353
Score = 36.6 bits (83), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 30/111 (27%)
Query: 164 YMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD-------------HNLNVTA 210
++E R + K V+AQ +R P+ ++I AA E D H N
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 211 -------------ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
AR ++ + CPTS ELW+ R+E TY N ARKV
Sbjct: 406 LWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLE-TYEN---ARKV 452
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 175 RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234
R + +L + +PK PG+W+ + E+ L A LM L+ CP S LW E +
Sbjct: 761 RARAILEKSRLKNPKNPGLWLESVRLEYRAGLK-NIANTLMAKALQECPNSGILWSEAIF 819
Query: 235 ME 236
+E
Sbjct: 820 LE 821
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 146 IYRLAVMRFKGDIELWFKYMEFCRQRKNG---RMKKVLAQVIRFHPKVPGVWIYAAAWEF 202
IY A+ F +W + F ++ +G ++ +L + + PK +W+ A ++
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYF--EKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKW 619
Query: 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+V AAR+++ + P SEE+W+ +++E
Sbjct: 620 LAG-DVPAARSILALAFQANPNSEEIWLAAVKLE 652
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf4 PE=1 SV=1
Length = 674
Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 158 IELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216
I LW KY+E + +N + + + + P+V +W Y + + N+T R + +
Sbjct: 104 IPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLW-YKYVYMEEMLGNITGCRQVFE 162
Query: 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
L+ P E W+ Y+RME Y +AR +
Sbjct: 163 RWLKWEP-DENCWMSYIRMERRYHENERARGI 193
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 170 QRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW 229
Q GR +K IR + G W+ WE D AR++ + L V T LW
Sbjct: 49 QEFQGRKRKEFEDAIRRNRLAMGHWMRYGQWELDQK-EFARARSVFERALDVDSTYIPLW 107
Query: 230 VEYLRMELTYLNKLKARKV 248
++Y+ E+ N AR +
Sbjct: 108 LKYIECEMKNRNINHARNL 126
>sp|Q5RCC2|PRP6_PONAB Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1
Length = 941
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 179 VLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+L V +P P WI +A E + + AR L+ G +CP SE++W+E R++
Sbjct: 297 LLKSVRETNPHHPPAWIASARLE-EVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQ 353
Score = 36.6 bits (83), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 30/111 (27%)
Query: 164 YMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD-------------HNLNVTA 210
++E R + K V+AQ +R P+ ++I AA E D H N
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQFVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 211 -------------ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
AR ++ + CPTS ELW+ R+E TY N ARKV
Sbjct: 406 LWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLE-TYEN---ARKV 452
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 175 RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234
R + +L + +PK PG+W+ + E+ L A LM L+ CP S LW E +
Sbjct: 761 RTRAILEKSRLKNPKNPGLWLESVRLEYRAGLK-NIANTLMAKALQECPNSGILWSEAIF 819
Query: 235 ME 236
+E
Sbjct: 820 LE 821
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 146 IYRLAVMRFKGDIELWFKYMEFCRQRKNGR-MKKVLAQVIRFHPKVPGVWIYAAAWEFDH 204
IY A+ F +W + F + ++ +L + + PK +W+ A ++
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYFGKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLT 621
Query: 205 NLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+V AAR+++ + P SEE+W+ +++E
Sbjct: 622 G-DVPAARSILALAFQANPNSEEIWLAAVKLE 652
>sp|A1A5S1|PRP6_RAT Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=2
SV=1
Length = 941
Score = 36.6 bits (83), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 179 VLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+L V +P P WI +A E + + AR L+ G +CP SE++W+E R++
Sbjct: 297 LLKSVRETNPHHPPAWIASARLE-EVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQ 353
Score = 36.2 bits (82), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 30/111 (27%)
Query: 164 YMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD-------------HNLNVTA 210
++E R + K V+AQ +R P+ ++I AA E D H N
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 211 -------------ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
AR ++ + CPTS ELW+ R+E TY N ARKV
Sbjct: 406 LWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLE-TYEN---ARKV 452
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 175 RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234
R + +L + +PK PG+W+ + E+ L A LM L+ CP S LW E +
Sbjct: 761 RARAILEKSRLKNPKNPGLWLESVRLEYRAGLK-NIANTLMAKALQECPNSGILWSEAVF 819
Query: 235 MELTYLNKLKA 245
+E K K+
Sbjct: 820 LEARPQRKTKS 830
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 146 IYRLAVMRFKGDIELWFKYMEFCRQRKNG---RMKKVLAQVIRFHPKVPGVWIYAAAWEF 202
IY A+ F +W + F ++ +G ++ +L + + PK +W+ A ++
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYF--EKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKW 619
Query: 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+V AAR+++ + P SEE+W+ +++E
Sbjct: 620 LAG-DVPAARSILALAFQANPNSEEIWLAAVKLE 652
>sp|Q91YR7|PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1
Length = 941
Score = 36.6 bits (83), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 179 VLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+L V +P P WI +A E + + AR L+ G +CP SE++W+E R++
Sbjct: 297 LLKSVRETNPHHPPAWIASARLE-EVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQ 353
Score = 36.2 bits (82), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 30/111 (27%)
Query: 164 YMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD-------------HNLNVTA 210
++E R + K V+AQ +R P+ ++I AA E D H N
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 211 -------------ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
AR ++ + CPTS ELW+ R+E TY N ARKV
Sbjct: 406 LWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLE-TYEN---ARKV 452
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 175 RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234
R + +L + +PK PG+W+ + E+ L A LM L+ CP S LW E +
Sbjct: 761 RARAILEKSRLKNPKNPGLWLESVRLEYRAGLK-NIANTLMAKALQECPNSGILWSEAVF 819
Query: 235 MELTYLNKLKA 245
+E K K+
Sbjct: 820 LEARPQRKTKS 830
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 146 IYRLAVMRFKGDIELWFKYMEFCRQRKNG---RMKKVLAQVIRFHPKVPGVWIYAAAWEF 202
IY A+ F +W + F ++ +G ++ +L + + PK +W+ A ++
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYF--EKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKW 619
Query: 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+V AAR+++ + P SEE+W+ +++E
Sbjct: 620 LAG-DVPAARSILALAFQANPNSEEIWLAAVKLE 652
>sp|Q2KJJ0|PRP6_BOVIN Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1
Length = 941
Score = 36.6 bits (83), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 179 VLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+L V +P P WI +A E + + AR L+ G +CP SE++W+E R++
Sbjct: 297 LLKSVRETNPHHPPAWIASARLE-EVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQ 353
Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 30/111 (27%)
Query: 164 YMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD-------------HNLNVTA 210
++E R + K V+AQ +R P+ ++I AA E D H N
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 211 -------------ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
AR ++ + CPTS ELW+ R+E TY N ARKV
Sbjct: 406 LWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLE-TYEN---ARKV 452
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 175 RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234
R + +L + +PK PG+W+ + E+ L A+ LM L+ CP S LW E +
Sbjct: 761 RARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIAS-TLMAKALQECPNSGVLWSEAIF 819
Query: 235 MELTYLNKLKA 245
+E K K+
Sbjct: 820 LEARPQRKTKS 830
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 146 IYRLAVMRFKGDIELWFKYMEFCRQRKNG---RMKKVLAQVIRFHPKVPGVWIYAAAWEF 202
IY A+ F +W + F ++ +G ++ +L + + PK +W+ A ++
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYF--EKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKW 619
Query: 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236
+V AAR+++ + P SEE+W+ +++E
Sbjct: 620 LAG-DVPAARSILALAFQANPNSEEIWLAAVKLE 652
>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3
SV=1
Length = 676
Score = 36.6 bits (83), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232
GR +K +R + W+ A+WE + AR++ + L V PTS LW+ Y
Sbjct: 54 QGRKRKEFEDYVRRNRLNMNNWMRYASWELEQK-EFRRARSIFERALDVNPTSVVLWIRY 112
Query: 233 LRMELTYLNKLKARKV 248
+ E+ N AR +
Sbjct: 113 IESEMRNRNINHARNL 128
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4
Length = 848
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Query: 88 PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERR--VSKKMKKSVSDFS--GVARI 143
P P +Q I E +L+ + LRK+ D R+ R +S +K + + S + R
Sbjct: 207 PPPPQQK----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRA 261
Query: 144 LEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEF 202
IY A+ +I LW KY E + R+ + + + I P+V W Y +
Sbjct: 262 RSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFW-YKYTYME 320
Query: 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
+ NV AR + + + P E+ W Y+ EL Y +AR +
Sbjct: 321 EMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRARTI 365
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=clf-1 PE=3 SV=1
Length = 695
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 151 VMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT 209
V R + + W +Y ++ Q++ R + V + + HP +WI E N N+
Sbjct: 65 VRRNRVRLSNWLQYAQWELEQKEFARARSVFERALDVHPNNTQLWIRYVQAEI-KNRNIN 123
Query: 210 AARALMQNGLRVCPTSEELWVEYL 233
AR L+ + P LW +YL
Sbjct: 124 HARNLLDRAVTRLPRVTSLWYQYL 147
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Query: 88 PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERR--VSKKMKKSVSDFS--GVARI 143
P P +Q I E +L+ + LRK+ D R+ R +S +K + + S + R
Sbjct: 46 PPPPQQK----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRA 100
Query: 144 LEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEF 202
IY A+ +I LW KY E + R+ + + + I P+V W Y +
Sbjct: 101 RSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFW-YKYTYME 159
Query: 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
+ NV AR + + + P E+ W Y+ EL Y +AR +
Sbjct: 160 EMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVERARTI 204
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Query: 88 PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERR--VSKKMKKSVSDFS--GVARI 143
P P +Q I E +L+ + LRK+ D R+ R +S +K + + S + R
Sbjct: 46 PPPPQQK----ITDEEELNDYK-LRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRA 100
Query: 144 LEIYRLAVMRFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEF 202
IY A+ +I LW KY E + R+ + + + I P+V W Y +
Sbjct: 101 RSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFW-YKYTYME 159
Query: 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
+ NV AR + + + P E+ W Y+ EL Y +AR +
Sbjct: 160 EMLGNVAGARQVFERWMEWQP-EEQAWHSYINFELRYKEVERARTI 204
>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis
GN=CLF1 PE=3 SV=1
Length = 677
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232
GR +K +R + W+ A WE + AR++ + L V PT+ LW+ Y
Sbjct: 54 QGRKRKEFEDYVRRNRISMNNWMRYAQWELEQK-EFRRARSVFERALDVDPTAVVLWIRY 112
Query: 233 LRMELTYLNKLKARKV 248
+ E+ N AR +
Sbjct: 113 IEAEMKTRNINHARNL 128
>sp|Q6YFE6|URC2_LACKL Uracil catabolism protein 2 OS=Lachancea kluyveri GN=URC2 PE=3 SV=2
Length = 726
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 26/123 (21%)
Query: 331 QRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVP 390
QR F +V N + + H+++ D+ RDFLV +W I+P
Sbjct: 217 QRPF-VVARFNFLKYFNQHEQLCLDLSRDFLVKSHFW--------------------IIP 255
Query: 391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450
+++ + Y E K++ I ++T M K E +L VE ++++ LT+
Sbjct: 256 GGIKEINRTYVE--KHL---FITSVFTIIAMGFDENNKYEKEQEQLYPLVERFLTNTLTM 310
Query: 451 YEK 453
+EK
Sbjct: 311 FEK 313
>sp|Q3AF87|SYV_CARHZ Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=valS PE=3 SV=1
Length = 878
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 71 ISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKM 130
+ E++++ R+ + P P K+ + + + QL L +I E RV KM
Sbjct: 727 LMEVIREIRRLRAEVNVP-PAKRGEVILVTADEQLTRLLNENAWAIAALAQSEPRVVPKM 785
Query: 131 KKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKV 190
+ +GVA + IY + K I+L E ++R N +KKVLA++ R + K+
Sbjct: 786 EVPQGALTGVAAGVTIY----LPLKDLIDL-----EKEKERLNKELKKVLAEIERLNQKL 836
Query: 191 --PGVWIYAAA 199
PG A A
Sbjct: 837 NNPGFLAKAPA 847
>sp|Q9HF03|CLF1_CRYNH Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
/ FGSC 9487) GN=CLF1 PE=3 SV=1
Length = 724
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232
R + IR+ W A WE N +R++ + L V P S +LW++Y
Sbjct: 57 QARKRTEFESRIRYSRDSILAWTKYAQWEASQN-EYERSRSVFERALDVDPRSVDLWIKY 115
Query: 233 LRMELTYLNKLKARKV 248
MEL N AR +
Sbjct: 116 TDMELKARNINHARNL 131
>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CLF1 PE=3 SV=1
Length = 726
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232
R + IR+ W A WE N +R++ + L V P S +LW++Y
Sbjct: 57 QARKRTEFESRIRYSRDSILAWTKYAQWEASQN-EYERSRSVFERALDVDPRSVDLWIKY 115
Query: 233 LRMELTYLNKLKARKV 248
MEL N AR +
Sbjct: 116 TDMELKARNINHARNL 131
Score = 33.5 bits (75), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 118/281 (41%), Gaps = 44/281 (15%)
Query: 158 IELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216
++LW KY + + R + + + I P+V +W Y + + LNV+ AR + +
Sbjct: 109 VDLWIKYTDMELKARNINHARNLFDRAITLLPRVDALW-YKYVYLEELLLNVSGARQIFE 167
Query: 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADE---KRWIN-- 271
++ P +++ W Y+++E Y N+L D+ + + + A K W+
Sbjct: 168 RWMQWEP-NDKAWQSYIKLEERY-NEL---------DRASAIYERWIACRPIPKNWVTWA 216
Query: 272 ---ENKGLFMPLDG-EVENTD----GSQPENMESQKSV-DLFREQGLRV-----LQTIYS 317
E++G P EV T G + E +E +SV F R+ + IY
Sbjct: 217 KFEEDRG--QPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYK 274
Query: 318 GAVEALP----SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWD-W--L 370
A+ LP +S + FE + K + + DP +D W L
Sbjct: 275 FALARLPRSKSASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSL 334
Query: 371 ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM 411
ARL+ + ED+ P +++ +VYE A+ NVP ++
Sbjct: 335 ARLEEDAYRADREDGEDVEPMRVR---EVYERAVANVPPAL 372
>sp|P0CO11|CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1
Length = 726
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232
R + IR+ W A WE N +R++ + L V P S +LW++Y
Sbjct: 57 QARKRTEFESRIRYSRDSILAWTKYAQWEASQN-EYERSRSVFERALDVDPRSVDLWIKY 115
Query: 233 LRMELTYLNKLKARKV 248
MEL N AR +
Sbjct: 116 TDMELKARNINHARNL 131
Score = 33.5 bits (75), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 118/281 (41%), Gaps = 44/281 (15%)
Query: 158 IELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216
++LW KY + + R + + + I P+V +W Y + + LNV+ AR + +
Sbjct: 109 VDLWIKYTDMELKARNINHARNLFDRAITLLPRVDALW-YKYVYLEELLLNVSGARQIFE 167
Query: 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADE---KRWIN-- 271
++ P +++ W Y+++E Y N+L D+ + + + A K W+
Sbjct: 168 RWMQWEP-NDKAWQSYIKLEERY-NEL---------DRASAIYERWIACRPIPKNWVTWA 216
Query: 272 ---ENKGLFMPLDG-EVENTD----GSQPENMESQKSV-DLFREQGLRV-----LQTIYS 317
E++G P EV T G + E +E +SV F R+ + IY
Sbjct: 217 KFEEDRG--QPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYK 274
Query: 318 GAVEALP----SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWD-W--L 370
A+ LP +S + FE + K + + DP +D W L
Sbjct: 275 FALARLPRSKSASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSL 334
Query: 371 ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM 411
ARL+ + ED+ P +++ +VYE A+ NVP ++
Sbjct: 335 ARLEEDAYRADREDGEDVEPMRVR---EVYERAVANVPPAL 372
>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2
Length = 3433
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 100 EYESQLDALRRLRKKSIGR-DEGRERRVSKKMKKSVSDFSG-VARILEIYRLAVMRFKGD 157
+Y++QL+ L + R E +E+ + +KK +++ + + E Y +K
Sbjct: 1101 DYQTQLEKLSKEIATQKSRLSESQEK--AANLKKDLAEMQEWMTQAEEEYLERDFEYKSP 1158
Query: 158 IELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR-ALMQ 216
EL E R +++ K+V ++++ + K+ + + E LNV L+
Sbjct: 1159 EELESAVEEMKRAKEDVLQKEVRVKILKDNIKLLAAKVPSGGQELTSELNVVLENYQLLC 1218
Query: 217 NGLR-VCPTSEELW------VEYLRMELTYLNKLKAR 246
N +R C T EE+W + YL +E T+LN L+ R
Sbjct: 1219 NRIRGKCHTLEEVWSCWIELLHYLDLETTWLNTLEER 1255
>sp|Q6FW76|CLF1_CANGA Pre-mRNA-splicing factor CLF1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CLF1
PE=3 SV=1
Length = 695
Score = 33.1 bits (74), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 153 RFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAA 211
R + D++ W +Y F Q R + + + +R H +WI E + A
Sbjct: 56 RNRLDVKQWMRYAVFEIEQHDMRRARSIFERALRVHISYVPLWIRYIESELKLGY-INHA 114
Query: 212 RALMQNGLRVCPTSEELWVEYLRME 236
R +++ + P ++LW +YL +E
Sbjct: 115 RNILERAITKLPRVDKLWYKYLIVE 139
>sp|Q6CJK2|CLF1_KLULA Pre-mRNA-splicing factor CLF1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CLF1 PE=3 SV=1
Length = 684
Score = 32.7 bits (73), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 147 YRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQ--VIRFHPKVPGVWIYAAAWEFDH 204
Y + R + D+ W +Y +F +K+ R + + + ++ H +P +WI E
Sbjct: 52 YETVLKRNRLDLRQWMRYAQFEFDQKDIRRARSIYERALLVDHGFIP-LWIQYIDSEIKW 110
Query: 205 NLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248
N+ AR L+ P ++LW +YL +E + N+ R +
Sbjct: 111 K-NINHARNLLDRATNALPRVDKLWFKYLLLEESLGNQGIVRGI 153
>sp|Q488Z9|RS8_COLP3 30S ribosomal protein S8 OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=rpsH PE=3 SV=1
Length = 129
Score = 32.7 bits (73), Expect = 8.9, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 564 VEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIE 623
V++A+ ++ K+ G S FS+ + + + +E+ ++ + RPGL +Y++C E
Sbjct: 31 VKVAIATLLKEEGYISEFSVSGEVKPELAVTLKYFEGKEVIEKIKRVSRPGLRIYKSCDE 90
Query: 624 LENNLASVG 632
L LA +G
Sbjct: 91 LPKVLAGMG 99
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 32.7 bits (73), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 142 RILEIYRLAVM-----RFKGDIELWFKYMEF-CRQRKNGRMKKVLAQVIRFHPKVPGVWI 195
R EIY+ A+ RF +LW +Y F R+ + +K+L I PK+ +
Sbjct: 405 RTREIYKAAIALVPHRRFTF-AKLWVQYARFEVRRLELTAARKILGAAIGMAPKLK---L 460
Query: 196 YAAAWEFDHNLN-VTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKAR---KVALG 251
+++ E + +L AR + + L PT+ + WV + +E + +AR ++ +G
Sbjct: 461 FSSYIELEVSLKEFDRARKIYEKALEWDPTNSQTWVRFAELEKNLFDTDRARALFELGVG 520
Query: 252 EDKG 255
+ +G
Sbjct: 521 QAEG 524
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,669,619
Number of Sequences: 539616
Number of extensions: 9798766
Number of successful extensions: 27364
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 27211
Number of HSP's gapped (non-prelim): 196
length of query: 676
length of database: 191,569,459
effective HSP length: 124
effective length of query: 552
effective length of database: 124,657,075
effective search space: 68810705400
effective search space used: 68810705400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)